Query 006859
Match_columns 628
No_of_seqs 443 out of 4152
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 15:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0249 MutS Mismatch repair A 100.0 1.3E-88 2.9E-93 760.6 53.2 538 1-575 260-800 (843)
2 PRK05399 DNA mismatch repair p 100.0 1.5E-87 3.2E-92 767.0 58.9 582 1-623 263-852 (854)
3 TIGR01070 mutS1 DNA mismatch r 100.0 1.6E-87 3.5E-92 761.6 56.5 534 1-574 249-784 (840)
4 KOG0218 Mismatch repair MSH3 [ 100.0 9.9E-80 2.1E-84 637.1 40.9 545 1-575 458-1031(1070)
5 KOG0220 Mismatch repair ATPase 100.0 3.1E-77 6.8E-82 620.9 42.3 601 1-627 259-865 (867)
6 KOG0217 Mismatch repair ATPase 100.0 3.6E-70 7.7E-75 588.6 42.8 545 1-574 538-1092(1125)
7 KOG0219 Mismatch repair ATPase 100.0 4.7E-67 1E-71 553.5 39.9 536 1-574 288-837 (902)
8 KOG0221 Mismatch repair ATPase 100.0 1.6E-65 3.5E-70 524.0 32.5 571 1-604 237-826 (849)
9 PRK00409 recombination and DNA 100.0 3E-62 6.6E-67 552.4 52.4 490 32-570 16-513 (782)
10 TIGR01069 mutS2 MutS2 family p 100.0 4.6E-58 1E-62 516.8 52.7 491 32-573 16-511 (771)
11 PF00488 MutS_V: MutS domain V 100.0 9.4E-44 2E-48 348.7 18.6 230 343-573 1-234 (235)
12 smart00533 MUTSd DNA-binding d 100.0 6.4E-39 1.4E-43 332.2 32.5 307 28-366 1-307 (308)
13 COG1193 Mismatch repair ATPase 100.0 7.4E-38 1.6E-42 346.0 32.8 483 33-568 15-499 (753)
14 cd03286 ABC_MSH6_euk MutS6 hom 100.0 4.4E-39 9.5E-44 311.0 18.8 208 356-564 2-218 (218)
15 cd03285 ABC_MSH2_euk MutS2 hom 100.0 4.9E-38 1.1E-42 306.5 21.4 215 356-571 2-221 (222)
16 cd03287 ABC_MSH3_euk MutS3 hom 100.0 5.3E-38 1.1E-42 304.4 19.0 210 354-564 1-222 (222)
17 cd03284 ABC_MutS1 MutS1 homolo 100.0 1.2E-36 2.7E-41 295.7 19.8 211 356-567 2-215 (216)
18 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.5E-35 3.3E-40 284.6 19.7 200 356-555 2-203 (204)
19 cd03281 ABC_MSH5_euk MutS5 hom 100.0 3.7E-34 8.1E-39 277.6 18.8 200 356-556 2-213 (213)
20 smart00534 MUTSac ATPase domai 100.0 1.9E-33 4.2E-38 267.7 18.1 183 384-567 1-184 (185)
21 cd03283 ABC_MutS-like MutS-lik 100.0 8.6E-32 1.9E-36 258.3 19.8 196 356-556 2-199 (199)
22 cd03243 ABC_MutS_homologs The 100.0 2.6E-31 5.6E-36 257.1 18.7 199 356-556 2-202 (202)
23 cd03280 ABC_MutS2 MutS2 homolo 100.0 2.8E-31 6.1E-36 256.3 17.8 198 356-556 2-200 (200)
24 PF05192 MutS_III: MutS domain 99.9 2.7E-24 6E-29 208.8 21.8 202 5-333 1-204 (204)
25 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 8.5E-25 1.8E-29 211.6 15.6 154 352-517 8-210 (254)
26 COG1126 GlnQ ABC-type polar am 99.9 5.5E-24 1.2E-28 196.8 14.9 159 352-522 6-212 (240)
27 COG1123 ATPase components of v 99.9 3.6E-25 7.8E-30 234.2 7.9 267 352-627 9-529 (539)
28 COG1120 FepC ABC-type cobalami 99.9 7.3E-24 1.6E-28 206.3 16.2 186 352-560 6-242 (258)
29 COG1125 OpuBA ABC-type proline 99.9 7.2E-26 1.6E-30 213.3 0.4 219 352-627 5-235 (309)
30 COG1116 TauB ABC-type nitrate/ 99.9 1E-23 2.2E-28 201.1 14.1 154 352-516 7-201 (248)
31 COG1131 CcmA ABC-type multidru 99.9 5.9E-23 1.3E-27 208.8 15.9 157 352-520 8-211 (293)
32 COG4152 ABC-type uncharacteriz 99.9 1.6E-23 3.4E-28 196.3 10.6 154 353-518 7-202 (300)
33 COG3638 ABC-type phosphate/pho 99.9 7.8E-26 1.7E-30 211.7 -4.8 227 352-624 7-245 (258)
34 COG1127 Ttg2A ABC-type transpo 99.9 1.3E-22 2.9E-27 190.6 14.7 156 351-518 11-218 (263)
35 COG4555 NatA ABC-type Na+ tran 99.9 9.2E-23 2E-27 185.9 10.9 158 353-522 6-209 (245)
36 COG1124 DppF ABC-type dipeptid 99.9 2.3E-24 5E-29 203.5 0.5 216 352-627 7-241 (252)
37 COG1136 SalX ABC-type antimicr 99.9 2.4E-22 5.3E-27 191.9 14.2 151 353-513 6-212 (226)
38 COG3842 PotA ABC-type spermidi 99.9 5.5E-25 1.2E-29 223.7 -4.5 216 352-627 9-236 (352)
39 COG4604 CeuD ABC-type enteroch 99.9 6E-25 1.3E-29 199.2 -4.0 211 352-623 5-233 (252)
40 PRK13537 nodulation ABC transp 99.9 7.2E-22 1.6E-26 202.9 15.9 163 352-532 11-218 (306)
41 COG1135 AbcC ABC-type metal io 99.9 4.9E-24 1.1E-28 207.2 -1.1 216 354-627 7-241 (339)
42 COG4172 ABC-type uncharacteriz 99.9 2.5E-22 5.4E-27 200.5 10.8 96 532-627 423-526 (534)
43 PRK13536 nodulation factor exp 99.9 1.4E-21 3.1E-26 202.7 15.6 165 350-532 43-252 (340)
44 COG3839 MalK ABC-type sugar tr 99.9 2.2E-24 4.7E-29 218.1 -6.4 216 352-627 7-233 (338)
45 COG0411 LivG ABC-type branched 99.9 4.6E-22 1E-26 188.2 9.5 152 351-522 7-226 (250)
46 COG2884 FtsE Predicted ATPase 99.9 3.4E-21 7.3E-26 174.3 13.6 149 353-511 6-204 (223)
47 COG1118 CysA ABC-type sulfate/ 99.9 4.2E-24 9E-29 207.1 -5.5 215 353-624 7-234 (345)
48 cd03259 ABC_Carb_Solutes_like 99.9 5.8E-21 1.3E-25 186.7 15.9 152 353-516 5-201 (213)
49 COG4559 ABC-type hemin transpo 99.9 3.2E-23 6.9E-28 190.4 -0.1 198 352-614 5-226 (259)
50 COG1119 ModF ABC-type molybden 99.9 4.8E-21 1E-25 181.2 14.6 149 350-510 33-237 (257)
51 cd03226 ABC_cobalt_CbiO_domain 99.9 6.5E-21 1.4E-25 185.1 16.0 152 353-516 4-196 (205)
52 cd03293 ABC_NrtD_SsuB_transpor 99.9 8.3E-21 1.8E-25 186.5 16.5 143 353-505 5-193 (220)
53 TIGR01188 drrA daunorubicin re 99.9 4.8E-21 1E-25 197.0 15.1 148 357-516 2-194 (302)
54 PRK11247 ssuB aliphatic sulfon 99.9 7.3E-21 1.6E-25 190.5 15.9 172 345-534 10-216 (257)
55 cd03216 ABC_Carb_Monos_I This 99.9 2.2E-21 4.8E-26 180.9 11.3 135 353-505 5-143 (163)
56 cd03265 ABC_DrrA DrrA is the A 99.9 8.7E-21 1.9E-25 186.4 15.8 161 353-531 5-211 (220)
57 cd03214 ABC_Iron-Siderophores_ 99.9 1.6E-20 3.4E-25 178.4 16.1 136 353-506 4-160 (180)
58 cd03261 ABC_Org_Solvent_Resist 99.9 1.1E-20 2.4E-25 187.5 15.8 152 353-516 5-207 (235)
59 cd03301 ABC_MalK_N The N-termi 99.8 1.4E-20 3.1E-25 183.9 16.0 143 353-505 5-192 (213)
60 TIGR01288 nodI ATP-binding ABC 99.8 1.2E-20 2.7E-25 194.0 16.3 153 352-516 8-205 (303)
61 cd03225 ABC_cobalt_CbiO_domain 99.8 1.6E-20 3.4E-25 183.4 15.3 152 353-516 4-204 (211)
62 COG1137 YhbG ABC-type (unclass 99.8 1.6E-21 3.4E-26 177.7 6.9 153 353-516 9-209 (243)
63 cd03269 ABC_putative_ATPase Th 99.8 2.5E-20 5.3E-25 181.8 15.3 144 353-506 5-190 (210)
64 PRK11629 lolD lipoprotein tran 99.8 2.6E-20 5.6E-25 184.6 15.4 168 352-538 9-231 (233)
65 cd03218 ABC_YhbG The ABC trans 99.8 3.2E-20 7E-25 184.0 16.1 152 353-516 5-203 (232)
66 cd03258 ABC_MetN_methionine_tr 99.8 3.7E-20 8.1E-25 183.6 16.6 152 353-516 6-211 (233)
67 COG1117 PstB ABC-type phosphat 99.8 1.9E-20 4.2E-25 172.5 13.2 160 352-524 11-226 (253)
68 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 2.3E-20 4.9E-25 183.2 14.7 146 353-508 5-205 (218)
69 TIGR03522 GldA_ABC_ATP gliding 99.8 2.3E-20 4.9E-25 191.8 15.1 152 352-516 6-202 (301)
70 TIGR00960 3a0501s02 Type II (G 99.8 2.7E-20 5.9E-25 182.3 15.0 144 353-506 6-200 (216)
71 cd03266 ABC_NatA_sodium_export 99.8 3E-20 6.5E-25 182.4 15.2 143 353-505 6-197 (218)
72 cd03268 ABC_BcrA_bacitracin_re 99.8 3.1E-20 6.8E-25 180.8 15.2 145 353-507 5-189 (208)
73 TIGR02673 FtsE cell division A 99.8 2.9E-20 6.4E-25 181.9 15.0 152 353-516 6-207 (214)
74 cd03296 ABC_CysA_sulfate_impor 99.8 4E-20 8.7E-25 184.0 15.9 152 353-516 7-207 (239)
75 PRK09536 btuD corrinoid ABC tr 99.8 3.5E-20 7.5E-25 195.5 16.1 153 352-516 7-209 (402)
76 cd03262 ABC_HisP_GlnQ_permease 99.8 3.8E-20 8.1E-25 181.0 15.2 152 353-516 5-205 (213)
77 PRK11248 tauB taurine transpor 99.8 5.3E-20 1.1E-24 184.5 16.6 152 353-516 6-199 (255)
78 PRK11650 ugpC glycerol-3-phosp 99.8 3E-20 6.5E-25 194.1 15.4 154 352-516 7-205 (356)
79 TIGR02315 ABC_phnC phosphonate 99.8 5.1E-20 1.1E-24 183.9 16.2 152 353-516 6-216 (243)
80 TIGR03265 PhnT2 putative 2-ami 99.8 4.1E-20 8.9E-25 192.9 15.8 154 352-516 8-205 (353)
81 COG4525 TauB ABC-type taurine 99.8 1.6E-19 3.6E-24 163.7 17.2 137 353-506 8-195 (259)
82 PRK11000 maltose/maltodextrin 99.8 5.1E-20 1.1E-24 193.7 16.0 153 353-516 8-204 (369)
83 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 4.6E-20 1E-24 183.2 14.8 146 353-508 6-197 (236)
84 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 4.3E-20 9.3E-25 181.6 14.3 145 353-506 27-204 (224)
85 PRK11432 fbpC ferric transport 99.8 5.6E-20 1.2E-24 191.5 15.7 154 352-516 10-207 (351)
86 COG1122 CbiO ABC-type cobalt t 99.8 3.5E-20 7.5E-25 180.7 13.3 152 353-516 8-209 (235)
87 cd03219 ABC_Mj1267_LivG_branch 99.8 6.4E-20 1.4E-24 182.3 15.4 152 353-516 5-213 (236)
88 PRK11153 metN DL-methionine tr 99.8 6.7E-20 1.4E-24 191.2 16.2 162 353-532 6-221 (343)
89 TIGR02314 ABC_MetN D-methionin 99.8 7.2E-20 1.6E-24 189.7 16.2 162 353-532 6-221 (343)
90 PRK11831 putative ABC transpor 99.8 7.1E-20 1.5E-24 185.3 15.8 154 351-516 10-214 (269)
91 cd03256 ABC_PhnC_transporter A 99.8 9.7E-20 2.1E-24 181.7 16.1 152 353-516 5-215 (241)
92 cd03292 ABC_FtsE_transporter F 99.8 7E-20 1.5E-24 179.2 14.7 144 353-506 5-198 (214)
93 TIGR03258 PhnT 2-aminoethylpho 99.8 7.7E-20 1.7E-24 191.1 15.9 153 352-516 9-209 (362)
94 PRK11264 putative amino-acid A 99.8 1E-19 2.2E-24 182.5 16.2 153 352-516 7-214 (250)
95 PRK13636 cbiO cobalt transport 99.8 9.1E-20 2E-24 185.7 16.0 166 348-531 5-221 (283)
96 PRK13637 cbiO cobalt transport 99.8 1.2E-19 2.6E-24 185.0 16.8 161 353-531 7-224 (287)
97 TIGR02211 LolD_lipo_ex lipopro 99.8 8.2E-20 1.8E-24 179.7 15.0 145 353-507 6-205 (221)
98 cd03263 ABC_subfamily_A The AB 99.8 1E-19 2.3E-24 178.8 15.7 143 353-506 5-194 (220)
99 COG0410 LivF ABC-type branched 99.8 6.8E-20 1.5E-24 172.2 13.5 152 352-512 7-206 (237)
100 PRK10908 cell division protein 99.8 1E-19 2.3E-24 179.0 15.6 144 353-506 6-199 (222)
101 PRK13548 hmuV hemin importer A 99.8 1.1E-19 2.3E-24 182.8 16.0 152 353-516 7-211 (258)
102 PRK10584 putative ABC transpor 99.8 8.4E-20 1.8E-24 180.5 14.9 148 351-508 9-211 (228)
103 PRK09544 znuC high-affinity zi 99.8 5.9E-20 1.3E-24 183.5 13.9 154 351-516 7-191 (251)
104 TIGR03410 urea_trans_UrtE urea 99.8 9.3E-20 2E-24 180.4 15.2 152 353-516 5-202 (230)
105 PRK10851 sulfate/thiosulfate t 99.8 1.1E-19 2.4E-24 189.7 16.4 153 353-516 7-207 (353)
106 PRK13638 cbiO cobalt transport 99.8 1.2E-19 2.5E-24 184.0 16.2 161 353-531 6-215 (271)
107 cd03294 ABC_Pro_Gly_Bertaine T 99.8 7E-20 1.5E-24 185.2 14.5 152 353-516 29-231 (269)
108 PRK13647 cbiO cobalt transport 99.8 1.2E-19 2.6E-24 184.0 16.2 163 352-532 8-218 (274)
109 PRK09452 potA putrescine/sperm 99.8 9.5E-20 2.1E-24 191.1 15.9 154 352-516 18-215 (375)
110 cd03295 ABC_OpuCA_Osmoprotecti 99.8 1.3E-19 2.9E-24 180.6 16.3 161 353-531 5-215 (242)
111 cd03224 ABC_TM1139_LivF_branch 99.8 9.7E-20 2.1E-24 179.3 14.9 152 353-516 5-202 (222)
112 TIGR03608 L_ocin_972_ABC putat 99.8 7.1E-20 1.5E-24 178.1 13.8 146 353-508 3-198 (206)
113 cd03235 ABC_Metallic_Cations A 99.8 1E-19 2.2E-24 177.9 14.9 152 353-516 4-202 (213)
114 PRK09493 glnQ glutamine ABC tr 99.8 1.4E-19 3.1E-24 180.2 15.9 161 353-531 6-215 (240)
115 PRK10895 lipopolysaccharide AB 99.8 1.2E-19 2.7E-24 180.8 15.3 153 352-516 7-207 (241)
116 COG4586 ABC-type uncharacteriz 99.8 4.9E-20 1.1E-24 175.7 11.6 161 359-536 35-241 (325)
117 TIGR03740 galliderm_ABC gallid 99.8 1.5E-19 3.2E-24 178.1 15.4 144 353-506 5-186 (223)
118 PRK14250 phosphate ABC transpo 99.8 2.2E-19 4.7E-24 178.9 16.3 152 353-516 8-202 (241)
119 PRK10575 iron-hydroxamate tran 99.8 1.8E-19 4E-24 182.0 15.9 159 345-516 9-218 (265)
120 PRK13650 cbiO cobalt transport 99.8 1.9E-19 4.1E-24 182.9 16.0 162 352-532 8-220 (279)
121 TIGR01186 proV glycine betaine 99.8 1.2E-19 2.6E-24 189.1 14.8 149 357-516 2-200 (363)
122 PRK13641 cbiO cobalt transport 99.8 2.3E-19 5.1E-24 183.1 16.7 152 353-516 7-215 (287)
123 PRK13644 cbiO cobalt transport 99.8 1.9E-19 4.1E-24 182.5 15.8 160 353-531 6-214 (274)
124 cd03264 ABC_drug_resistance_li 99.8 1.8E-19 4E-24 175.8 15.1 143 353-507 5-192 (211)
125 PRK13538 cytochrome c biogenes 99.8 9.6E-20 2.1E-24 176.7 12.9 146 353-508 6-193 (204)
126 COG3840 ThiQ ABC-type thiamine 99.8 2.2E-19 4.8E-24 161.2 14.0 158 354-538 7-216 (231)
127 PRK11614 livF leucine/isoleuci 99.8 1.4E-19 3E-24 179.9 14.3 153 352-516 9-207 (237)
128 PRK13635 cbiO cobalt transport 99.8 2.1E-19 4.6E-24 182.5 15.8 161 352-531 9-219 (279)
129 cd03257 ABC_NikE_OppD_transpor 99.8 2.9E-19 6.2E-24 176.7 16.3 152 353-516 6-216 (228)
130 PRK13652 cbiO cobalt transport 99.8 2.6E-19 5.6E-24 181.9 16.4 162 352-531 7-217 (277)
131 PRK11607 potG putrescine trans 99.8 1.8E-19 3.9E-24 189.3 15.7 154 352-516 23-220 (377)
132 PRK13634 cbiO cobalt transport 99.8 2.9E-19 6.2E-24 182.6 16.8 162 353-532 7-226 (290)
133 cd03260 ABC_PstB_phosphate_tra 99.8 3.2E-19 6.9E-24 176.2 16.4 160 353-531 5-219 (227)
134 cd03298 ABC_ThiQ_thiamine_tran 99.8 3.2E-19 6.8E-24 174.1 16.0 142 353-506 5-191 (211)
135 PRK11300 livG leucine/isoleuci 99.8 2.4E-19 5.3E-24 180.3 15.5 153 352-516 9-224 (255)
136 PRK13543 cytochrome c biogenes 99.8 2.3E-19 5.1E-24 175.3 15.0 148 348-505 11-198 (214)
137 cd03267 ABC_NatA_like Similar 99.8 2.2E-19 4.8E-24 178.1 15.0 142 355-506 28-216 (236)
138 COG0444 DppD ABC-type dipeptid 99.8 1.7E-21 3.8E-26 192.4 -0.3 219 353-627 6-253 (316)
139 COG1129 MglA ABC-type sugar tr 99.8 2.8E-19 6.1E-24 188.5 16.1 155 348-522 8-221 (500)
140 PRK11231 fecE iron-dicitrate t 99.8 3E-19 6.5E-24 179.5 15.6 152 353-516 7-208 (255)
141 COG4175 ProV ABC-type proline/ 99.8 2.3E-21 5E-26 188.3 0.1 209 369-627 40-264 (386)
142 PRK10253 iron-enterobactin tra 99.8 3.5E-19 7.5E-24 179.9 15.9 153 352-516 11-214 (265)
143 TIGR01166 cbiO cobalt transpor 99.8 1.3E-19 2.7E-24 173.9 11.9 137 359-505 3-188 (190)
144 PRK14242 phosphate transporter 99.8 4.6E-19 1E-23 178.0 16.5 155 349-516 7-218 (253)
145 PRK10247 putative ABC transpor 99.8 1.9E-19 4.2E-24 177.3 13.5 147 352-508 11-202 (225)
146 cd03297 ABC_ModC_molybdenum_tr 99.8 4.1E-19 8.8E-24 173.7 15.7 141 353-506 5-194 (214)
147 TIGR03005 ectoine_ehuA ectoine 99.8 4.1E-19 8.9E-24 178.2 16.0 161 353-531 5-226 (252)
148 PRK10070 glycine betaine trans 99.8 3.7E-19 8E-24 187.6 16.3 149 356-516 36-235 (400)
149 cd03300 ABC_PotA_N PotA is an 99.8 5.1E-19 1.1E-23 175.2 16.3 152 353-516 5-201 (232)
150 cd03222 ABC_RNaseL_inhibitor T 99.8 9.9E-20 2.1E-24 170.7 10.5 129 353-507 5-135 (177)
151 PRK13646 cbiO cobalt transport 99.8 5.6E-19 1.2E-23 180.2 16.9 161 353-531 7-225 (286)
152 PRK13651 cobalt transporter AT 99.8 5.1E-19 1.1E-23 181.4 16.6 162 353-532 7-245 (305)
153 cd03231 ABC_CcmA_heme_exporter 99.8 2.9E-19 6.2E-24 172.9 13.9 142 353-504 5-185 (201)
154 PRK13639 cbiO cobalt transport 99.8 4.9E-19 1.1E-23 179.7 16.3 161 353-531 6-216 (275)
155 TIGR03873 F420-0_ABC_ATP propo 99.8 3.9E-19 8.4E-24 178.8 15.4 152 353-516 6-207 (256)
156 PRK13540 cytochrome c biogenes 99.8 2.1E-19 4.6E-24 173.7 13.0 148 353-510 6-193 (200)
157 PRK13648 cbiO cobalt transport 99.8 4.5E-19 9.7E-24 179.5 15.6 163 351-532 10-222 (269)
158 PRK11124 artP arginine transpo 99.8 6.1E-19 1.3E-23 175.9 16.3 144 353-506 7-203 (242)
159 PRK15112 antimicrobial peptide 99.8 5.5E-19 1.2E-23 178.6 16.0 153 352-516 8-220 (267)
160 PRK10418 nikD nickel transport 99.8 6.6E-19 1.4E-23 176.8 16.4 158 346-516 2-211 (254)
161 PRK09984 phosphonate/organopho 99.8 3.7E-19 8E-24 179.6 14.7 146 351-506 7-215 (262)
162 cd03229 ABC_Class3 This class 99.8 1.3E-19 2.8E-24 171.7 10.7 137 353-507 5-164 (178)
163 PRK13633 cobalt transporter AT 99.8 6.1E-19 1.3E-23 179.4 16.3 162 352-532 8-224 (280)
164 TIGR01189 ccmA heme ABC export 99.8 2.5E-19 5.4E-24 173.0 12.8 142 353-504 5-187 (198)
165 cd03238 ABC_UvrA The excision 99.8 2.2E-19 4.8E-24 168.2 12.0 143 356-508 3-153 (176)
166 PRK13632 cbiO cobalt transport 99.8 5.5E-19 1.2E-23 179.0 15.7 161 352-531 11-221 (271)
167 PRK13545 tagH teichoic acids e 99.8 4.6E-19 9.9E-24 188.8 15.7 153 343-516 17-213 (549)
168 PRK15439 autoinducer 2 ABC tra 99.8 4.2E-19 9.1E-24 195.9 15.9 156 350-517 13-211 (510)
169 COG4598 HisP ABC-type histidin 99.8 3.9E-19 8.5E-24 159.0 12.6 164 353-528 11-234 (256)
170 PRK13643 cbiO cobalt transport 99.8 7.2E-19 1.6E-23 179.4 16.4 162 353-532 6-224 (288)
171 TIGR01184 ntrCD nitrate transp 99.8 4.9E-19 1.1E-23 175.0 14.7 140 365-516 2-185 (230)
172 PRK10619 histidine/lysine/argi 99.8 5.2E-19 1.1E-23 177.9 15.1 162 352-531 9-231 (257)
173 PRK13640 cbiO cobalt transport 99.8 6.4E-19 1.4E-23 179.4 15.9 162 352-532 9-223 (282)
174 TIGR00968 3a0106s01 sulfate AB 99.8 7.4E-19 1.6E-23 174.6 15.8 143 353-505 5-192 (237)
175 PRK13547 hmuV hemin importer A 99.8 6.5E-19 1.4E-23 177.9 15.6 152 353-516 6-225 (272)
176 PRK10938 putative molybdenum t 99.8 5.5E-19 1.2E-23 194.5 16.2 154 352-517 7-206 (490)
177 TIGR03411 urea_trans_UrtD urea 99.8 8.2E-19 1.8E-23 175.0 16.0 151 353-516 7-212 (242)
178 PRK13645 cbiO cobalt transport 99.8 9.1E-19 2E-23 179.1 16.5 161 353-531 11-230 (289)
179 cd03246 ABCC_Protease_Secretio 99.8 5.5E-19 1.2E-23 166.7 13.6 136 353-508 5-160 (173)
180 PRK13539 cytochrome c biogenes 99.8 4.2E-19 9.1E-24 172.6 13.1 146 352-507 6-190 (207)
181 TIGR02982 heterocyst_DevA ABC 99.8 7.1E-19 1.5E-23 172.7 14.9 147 353-509 6-207 (220)
182 cd03227 ABC_Class2 ABC-type Cl 99.8 4E-19 8.7E-24 165.5 12.4 132 357-512 3-149 (162)
183 TIGR02769 nickel_nikE nickel i 99.8 1.5E-18 3.2E-23 175.3 17.3 145 353-507 7-214 (265)
184 TIGR01978 sufC FeS assembly AT 99.8 1.1E-18 2.3E-23 174.3 15.9 145 353-507 5-207 (243)
185 TIGR00972 3a0107s01c2 phosphat 99.8 1.2E-18 2.6E-23 174.3 16.2 151 353-516 6-213 (247)
186 PRK10771 thiQ thiamine transpo 99.8 1.4E-18 3E-23 172.1 16.2 142 353-506 6-192 (232)
187 TIGR02142 modC_ABC molybdenum 99.8 8.9E-19 1.9E-23 183.7 15.6 149 354-516 5-202 (354)
188 PRK13649 cbiO cobalt transport 99.8 1.2E-18 2.7E-23 177.4 16.1 143 353-505 7-206 (280)
189 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 3.2E-19 7E-24 162.5 10.4 125 353-507 5-130 (144)
190 PRK15056 manganese/iron transp 99.8 1.5E-18 3.2E-23 176.0 16.0 144 352-505 10-203 (272)
191 PRK11308 dppF dipeptide transp 99.8 1.1E-18 2.3E-23 180.7 15.2 156 351-518 8-227 (327)
192 PRK10762 D-ribose transporter 99.8 9.5E-19 2.1E-23 192.9 15.8 154 351-516 7-211 (501)
193 COG4608 AppF ABC-type oligopep 99.8 1.2E-20 2.5E-25 182.7 0.5 176 361-627 26-209 (268)
194 cd03245 ABCC_bacteriocin_expor 99.8 1E-18 2.2E-23 171.7 14.2 145 353-508 7-203 (220)
195 TIGR03269 met_CoM_red_A2 methy 99.8 1.1E-18 2.4E-23 193.3 16.1 145 353-507 5-232 (520)
196 cd03230 ABC_DR_subfamily_A Thi 99.8 7E-19 1.5E-23 165.9 12.3 136 353-507 5-158 (173)
197 PRK14245 phosphate ABC transpo 99.8 2.4E-18 5.2E-23 172.4 16.8 152 352-516 7-215 (250)
198 PRK11144 modC molybdate transp 99.8 1.4E-18 3.1E-23 181.9 15.7 150 353-516 5-199 (352)
199 cd03247 ABCC_cytochrome_bd The 99.8 5.1E-19 1.1E-23 167.7 11.3 137 353-508 5-161 (178)
200 cd03228 ABCC_MRP_Like The MRP 99.8 4.7E-19 1E-23 166.8 10.9 136 353-508 5-159 (171)
201 PRK10636 putative ABC transpor 99.8 6.6E-18 1.4E-22 190.4 22.2 150 352-516 316-497 (638)
202 COG1134 TagH ABC-type polysacc 99.8 9.4E-19 2E-23 166.0 12.9 140 357-516 36-217 (249)
203 PRK11701 phnK phosphonate C-P 99.8 2.4E-18 5.2E-23 173.2 16.6 146 352-507 10-215 (258)
204 TIGR01277 thiQ thiamine ABC tr 99.8 2.3E-18 4.9E-23 168.3 15.6 150 353-516 5-199 (213)
205 PRK09700 D-allose transporter 99.8 1.4E-18 3E-23 192.1 15.8 154 351-516 8-215 (510)
206 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.1E-18 2.4E-23 168.5 13.1 140 353-508 5-168 (200)
207 PRK14248 phosphate ABC transpo 99.8 2.4E-18 5.3E-23 174.1 16.1 162 352-532 25-243 (268)
208 PRK13642 cbiO cobalt transport 99.8 1.9E-18 4E-23 175.6 15.3 152 352-516 8-210 (277)
209 TIGR02323 CP_lyasePhnK phospho 99.8 2.6E-18 5.6E-23 172.6 16.1 147 352-507 7-212 (253)
210 PRK13631 cbiO cobalt transport 99.8 3E-18 6.4E-23 176.8 16.8 164 351-532 24-256 (320)
211 PRK14268 phosphate ABC transpo 99.8 2.1E-18 4.7E-23 173.5 15.4 158 345-516 10-223 (258)
212 PRK10419 nikE nickel transport 99.8 2.5E-18 5.4E-23 173.8 15.9 145 352-506 7-214 (268)
213 cd03299 ABC_ModC_like Archeal 99.8 3E-18 6.4E-23 170.0 16.0 143 353-506 5-192 (235)
214 PRK13549 xylose transporter AT 99.8 1.9E-18 4.1E-23 190.8 16.2 153 352-516 9-213 (506)
215 PRK15079 oligopeptide ABC tran 99.8 1.8E-18 3.8E-23 179.2 14.9 144 361-516 34-232 (331)
216 PRK14269 phosphate ABC transpo 99.8 2.8E-18 6E-23 171.5 15.8 152 352-516 6-211 (246)
217 PRK13541 cytochrome c biogenes 99.8 1.1E-18 2.4E-23 168.0 12.3 145 353-508 6-187 (195)
218 cd03223 ABCD_peroxisomal_ALDP 99.8 5E-19 1.1E-23 165.5 9.5 135 353-508 5-152 (166)
219 PRK14244 phosphate ABC transpo 99.8 4E-18 8.7E-23 170.9 16.6 160 353-531 10-227 (251)
220 PRK14239 phosphate transporter 99.8 3.1E-18 6.6E-23 172.0 15.7 152 352-516 9-217 (252)
221 PRK11022 dppD dipeptide transp 99.8 2.4E-18 5.2E-23 178.2 15.2 153 352-516 7-224 (326)
222 PRK10744 pstB phosphate transp 99.8 3.5E-18 7.6E-23 172.2 16.0 152 352-516 17-225 (260)
223 PRK14275 phosphate ABC transpo 99.8 4E-18 8.6E-23 173.8 16.5 151 353-516 44-251 (286)
224 cd03250 ABCC_MRP_domain1 Domai 99.8 3E-18 6.5E-23 166.3 14.9 147 353-508 5-192 (204)
225 PRK10982 galactose/methyl gala 99.8 2.3E-18 5E-23 189.5 15.8 153 353-517 3-205 (491)
226 PRK14267 phosphate ABC transpo 99.8 4.1E-18 9E-23 171.1 16.2 152 352-516 8-218 (253)
227 cd03252 ABCC_Hemolysin The ABC 99.8 2.8E-18 6.1E-23 170.6 14.9 159 353-531 5-215 (237)
228 PRK11288 araG L-arabinose tran 99.8 2.1E-18 4.6E-23 190.1 15.4 153 352-516 8-210 (501)
229 TIGR03415 ABC_choXWV_ATP choli 99.8 2E-18 4.3E-23 180.7 14.2 152 354-516 30-235 (382)
230 cd03251 ABCC_MsbA MsbA is an e 99.8 3.5E-18 7.5E-23 169.6 15.3 150 353-516 5-206 (234)
231 PRK14247 phosphate ABC transpo 99.8 4.4E-18 9.5E-23 170.6 16.1 152 352-516 7-215 (250)
232 PRK14274 phosphate ABC transpo 99.8 5.1E-18 1.1E-22 171.0 16.6 153 351-516 15-224 (259)
233 PRK13546 teichoic acids export 99.8 3.1E-18 6.6E-23 172.1 14.9 137 360-506 36-205 (264)
234 COG0488 Uup ATPase components 99.8 1.9E-18 4.1E-23 187.1 14.2 143 352-508 7-214 (530)
235 cd03254 ABCC_Glucan_exporter_l 99.8 3.3E-18 7.1E-23 169.2 14.8 145 353-508 7-202 (229)
236 PRK14256 phosphate ABC transpo 99.8 4.9E-18 1.1E-22 170.4 16.1 152 352-516 8-217 (252)
237 PRK14237 phosphate transporter 99.8 4E-18 8.6E-23 172.3 15.5 152 352-516 24-232 (267)
238 cd03236 ABC_RNaseL_inhibitor_d 99.8 3.4E-18 7.3E-23 170.8 14.8 136 353-507 5-202 (255)
239 TIGR02770 nickel_nikD nickel i 99.8 4.1E-18 8.9E-23 168.5 15.1 141 364-516 2-196 (230)
240 PRK14251 phosphate ABC transpo 99.8 3.5E-18 7.5E-23 171.4 14.8 144 352-506 8-208 (251)
241 PRK14240 phosphate transporter 99.8 6E-18 1.3E-22 169.6 16.5 160 353-531 8-224 (250)
242 cd03248 ABCC_TAP TAP, the Tran 99.8 2.9E-18 6.3E-23 169.2 13.9 155 342-508 6-213 (226)
243 COG4619 ABC-type uncharacteriz 99.8 3.4E-18 7.5E-23 151.4 12.6 140 357-505 12-195 (223)
244 COG0488 Uup ATPase components 99.8 1.3E-17 2.9E-22 180.5 19.9 201 294-508 257-500 (530)
245 PRK14259 phosphate ABC transpo 99.8 3.8E-18 8.3E-23 172.6 14.7 156 348-516 13-223 (269)
246 cd03237 ABC_RNaseL_inhibitor_d 99.8 3.7E-18 7.9E-23 169.8 14.4 125 381-507 24-179 (246)
247 PRK14273 phosphate ABC transpo 99.8 5E-18 1.1E-22 170.5 15.5 145 351-506 10-211 (254)
248 PRK15177 Vi polysaccharide exp 99.8 3.8E-18 8.3E-23 166.3 13.9 125 363-506 2-165 (213)
249 cd03234 ABCG_White The White s 99.8 4.9E-18 1.1E-22 167.5 14.8 149 353-511 8-212 (226)
250 PRK14241 phosphate transporter 99.8 4.9E-18 1.1E-22 171.0 15.1 152 352-516 8-217 (258)
251 PRK14235 phosphate transporter 99.8 6.2E-18 1.3E-22 170.9 15.8 158 345-516 17-232 (267)
252 COG0396 sufC Cysteine desulfur 99.8 9.8E-18 2.1E-22 156.9 15.7 150 353-511 8-211 (251)
253 cd03289 ABCC_CFTR2 The CFTR su 99.8 6.8E-18 1.5E-22 170.2 16.0 150 353-516 7-206 (275)
254 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 7.8E-18 1.7E-22 167.5 16.0 150 353-516 5-207 (238)
255 PRK15064 ABC transporter ATP-b 99.8 3.6E-18 7.9E-23 189.6 14.8 149 353-516 6-222 (530)
256 COG3845 ABC-type uncharacteriz 99.8 5.1E-18 1.1E-22 175.2 14.5 150 352-521 8-215 (501)
257 PRK09580 sufC cysteine desulfu 99.8 8.3E-18 1.8E-22 168.4 15.8 146 353-508 6-209 (248)
258 cd03213 ABCG_EPDR ABCG transpo 99.8 1.9E-18 4E-23 166.1 10.7 135 353-505 8-172 (194)
259 cd00267 ABC_ATPase ABC (ATP-bi 99.8 2E-18 4.3E-23 160.2 10.4 137 353-508 4-144 (157)
260 PRK14253 phosphate ABC transpo 99.8 1.3E-17 2.9E-22 167.0 17.1 161 352-531 7-223 (249)
261 PRK14261 phosphate ABC transpo 99.8 7E-18 1.5E-22 169.4 15.1 153 351-516 9-218 (253)
262 PRK14272 phosphate ABC transpo 99.8 8.8E-18 1.9E-22 168.7 15.8 152 352-516 8-217 (252)
263 cd03232 ABC_PDR_domain2 The pl 99.8 1.7E-18 3.6E-23 166.2 10.0 135 353-505 8-169 (192)
264 PRK10636 putative ABC transpor 99.8 4.3E-18 9.3E-23 191.9 14.8 141 353-506 6-208 (638)
265 PRK03695 vitamin B12-transport 99.8 6E-18 1.3E-22 169.1 14.2 151 363-531 11-212 (248)
266 PRK14270 phosphate ABC transpo 99.8 1E-17 2.2E-22 168.1 15.8 152 352-516 8-216 (251)
267 PRK14265 phosphate ABC transpo 99.8 7.2E-18 1.6E-22 170.9 14.9 154 350-516 22-230 (274)
268 cd03253 ABCC_ATM1_transporter 99.8 8.1E-18 1.7E-22 167.2 14.9 145 353-508 5-200 (236)
269 COG4107 PhnK ABC-type phosphon 99.8 1.2E-17 2.6E-22 148.6 14.2 151 345-514 4-222 (258)
270 CHL00131 ycf16 sulfate ABC tra 99.8 1.1E-17 2.3E-22 168.1 15.8 148 352-508 11-215 (252)
271 PRK14271 phosphate ABC transpo 99.8 1.3E-17 2.7E-22 169.3 16.3 153 351-516 24-232 (276)
272 COG4181 Predicted ABC-type tra 99.8 7.8E-18 1.7E-22 149.7 12.8 146 360-514 22-217 (228)
273 COG4133 CcmA ABC-type transpor 99.8 5.5E-18 1.2E-22 153.6 12.0 134 353-504 7-190 (209)
274 PRK14255 phosphate ABC transpo 99.8 8.7E-18 1.9E-22 168.7 14.8 162 351-531 8-226 (252)
275 PRK09473 oppD oligopeptide tra 99.8 8.8E-18 1.9E-22 174.1 15.1 154 351-516 15-232 (330)
276 PRK15093 antimicrobial peptide 99.8 9.1E-18 2E-22 174.4 15.3 154 352-517 7-230 (330)
277 cd03215 ABC_Carb_Monos_II This 99.8 2.6E-18 5.6E-23 163.4 10.3 139 353-516 9-174 (182)
278 PRK14246 phosphate ABC transpo 99.8 1.4E-17 2.9E-22 167.3 16.0 159 344-516 7-222 (257)
279 PRK14236 phosphate transporter 99.8 1.4E-17 3E-22 168.8 16.0 152 352-516 29-237 (272)
280 PLN03073 ABC transporter F fam 99.8 6E-17 1.3E-21 183.2 22.6 143 352-507 512-687 (718)
281 cd03290 ABCC_SUR1_N The SUR do 99.8 9.4E-18 2E-22 164.6 14.1 145 354-507 6-205 (218)
282 cd03244 ABCC_MRP_domain2 Domai 99.8 1.3E-17 2.9E-22 163.9 15.1 145 353-508 7-202 (221)
283 TIGR02324 CP_lyasePhnL phospho 99.8 1.2E-17 2.5E-22 164.6 14.7 149 353-511 6-217 (224)
284 TIGR02633 xylG D-xylose ABC tr 99.8 9.8E-18 2.1E-22 185.0 15.6 152 353-516 6-211 (500)
285 PRK14262 phosphate ABC transpo 99.8 1.8E-17 4E-22 166.1 16.0 143 352-505 7-206 (250)
286 PRK14243 phosphate transporter 99.8 1.9E-17 4E-22 167.2 16.1 158 345-516 8-220 (264)
287 PRK14238 phosphate transporter 99.7 1.5E-17 3.2E-22 168.4 15.3 154 350-516 26-236 (271)
288 PRK14249 phosphate ABC transpo 99.7 1.9E-17 4.1E-22 166.1 15.8 152 352-516 8-216 (251)
289 PRK13549 xylose transporter AT 99.7 1.3E-17 2.8E-22 184.2 15.6 163 352-532 263-485 (506)
290 PRK15064 ABC transporter ATP-b 99.7 1.3E-17 2.8E-22 185.2 15.3 150 352-516 323-505 (530)
291 PRK14266 phosphate ABC transpo 99.7 2.8E-17 6.1E-22 164.7 16.4 152 352-516 7-215 (250)
292 PRK15134 microcin C ABC transp 99.7 1.9E-17 4.1E-22 183.9 16.4 154 352-517 9-228 (529)
293 PRK13409 putative ATPase RIL; 99.7 1.2E-17 2.5E-22 185.7 14.8 146 351-507 343-517 (590)
294 PRK14260 phosphate ABC transpo 99.7 2.3E-17 5E-22 166.1 15.4 152 352-516 11-219 (259)
295 COG4674 Uncharacterized ABC-ty 99.7 4.4E-18 9.5E-23 154.5 9.0 167 351-529 8-229 (249)
296 PRK15134 microcin C ABC transp 99.7 2.3E-17 5.1E-22 183.1 16.8 156 349-516 276-496 (529)
297 PRK11819 putative ABC transpor 99.7 1.5E-17 3.3E-22 185.3 15.3 144 350-507 8-223 (556)
298 TIGR03269 met_CoM_red_A2 methy 99.7 2E-17 4.4E-22 183.3 16.1 154 351-516 282-498 (520)
299 PRK14258 phosphate ABC transpo 99.7 3.5E-17 7.7E-22 164.9 16.3 153 352-516 11-221 (261)
300 PRK10261 glutathione transport 99.7 2.5E-17 5.4E-22 185.6 16.7 154 351-516 316-534 (623)
301 TIGR01257 rim_protein retinal- 99.7 1.6E-17 3.5E-22 201.6 16.0 154 353-518 1942-2142(2272)
302 PRK14254 phosphate ABC transpo 99.7 3.1E-17 6.7E-22 167.1 15.7 144 352-506 43-241 (285)
303 PRK14252 phosphate ABC transpo 99.7 3E-17 6.4E-22 165.9 15.5 153 351-516 19-230 (265)
304 COG2274 SunT ABC-type bacterio 99.7 8.4E-17 1.8E-21 180.0 20.0 148 352-512 475-676 (709)
305 TIGR02633 xylG D-xylose ABC tr 99.7 2.5E-17 5.4E-22 181.8 15.7 164 351-532 260-483 (500)
306 cd03233 ABC_PDR_domain1 The pl 99.7 3.6E-17 7.9E-22 158.2 14.9 138 354-503 9-179 (202)
307 PRK15439 autoinducer 2 ABC tra 99.7 3.6E-17 7.8E-22 180.5 16.1 161 354-532 269-483 (510)
308 PRK14263 phosphate ABC transpo 99.7 3.7E-17 7.9E-22 164.6 14.8 152 352-516 12-218 (261)
309 KOG0057 Mitochondrial Fe/S clu 99.7 8E-17 1.7E-21 167.8 17.5 147 352-511 355-553 (591)
310 cd03288 ABCC_SUR2 The SUR doma 99.7 4.8E-17 1E-21 163.6 15.5 159 343-516 15-224 (257)
311 cd03291 ABCC_CFTR1 The CFTR su 99.7 6.1E-17 1.3E-21 163.9 16.2 153 360-531 49-237 (282)
312 PRK11147 ABC transporter ATPas 99.7 2.3E-17 5.1E-22 186.4 14.6 157 352-531 7-232 (635)
313 PRK10762 D-ribose transporter 99.7 3E-17 6.5E-22 181.0 15.0 160 354-531 258-474 (501)
314 PRK10938 putative molybdenum t 99.7 3.1E-17 6.8E-22 180.6 15.1 147 351-507 263-465 (490)
315 PRK09700 D-allose transporter 99.7 3.2E-17 6.9E-22 181.3 14.9 153 362-532 277-489 (510)
316 PRK14264 phosphate ABC transpo 99.7 5.8E-17 1.3E-21 166.7 15.5 144 352-506 49-261 (305)
317 PRK13409 putative ATPase RIL; 99.7 4.7E-17 1E-21 180.9 15.6 143 353-507 78-274 (590)
318 cd03369 ABCC_NFT1 Domain 2 of 99.7 7.1E-17 1.5E-21 157.0 14.8 140 353-507 11-187 (207)
319 PRK10261 glutathione transport 99.7 4.5E-17 9.8E-22 183.5 15.4 159 350-520 14-243 (623)
320 PRK11147 ABC transporter ATPas 99.7 4.6E-17 1E-21 184.0 14.2 143 352-507 323-500 (635)
321 TIGR01257 rim_protein retinal- 99.7 5.8E-17 1.3E-21 196.8 15.8 153 354-519 934-1133(2272)
322 COG4988 CydD ABC-type transpor 99.7 2.9E-16 6.2E-21 166.2 19.0 224 303-547 270-549 (559)
323 PRK11819 putative ABC transpor 99.7 5.8E-17 1.3E-21 180.7 14.5 142 352-506 328-504 (556)
324 PRK14257 phosphate ABC transpo 99.7 7.9E-17 1.7E-21 166.8 14.3 152 352-516 84-294 (329)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 6.2E-17 1.3E-21 180.4 14.5 143 352-507 326-503 (552)
326 PRK10982 galactose/methyl gala 99.7 8.5E-17 1.8E-21 177.1 15.0 153 361-531 261-470 (491)
327 PRK11288 araG L-arabinose tran 99.7 1E-16 2.2E-21 176.8 15.7 153 362-532 267-476 (501)
328 COG4161 ArtP ABC-type arginine 99.7 1.6E-16 3.5E-21 139.7 13.6 147 352-508 6-205 (242)
329 COG1101 PhnK ABC-type uncharac 99.7 1.1E-16 2.5E-21 147.8 13.0 150 361-535 19-232 (263)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.3E-16 2.9E-21 177.8 15.4 149 352-516 8-228 (552)
331 TIGR03771 anch_rpt_ABC anchore 99.7 2.2E-16 4.7E-21 155.3 15.2 132 381-516 5-183 (223)
332 PRK10522 multidrug transporter 99.7 1.6E-16 3.4E-21 177.2 15.7 161 353-531 327-528 (547)
333 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 3.4E-16 7.3E-21 180.2 18.2 157 353-531 482-690 (710)
334 COG1123 ATPase components of v 99.7 1.5E-16 3.2E-21 169.1 13.7 148 361-527 304-511 (539)
335 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 5.6E-16 1.2E-20 177.6 19.0 157 353-531 456-663 (686)
336 PLN03211 ABC transporter G-25; 99.7 1.2E-16 2.6E-21 179.9 13.1 142 354-505 74-267 (659)
337 TIGR01842 type_I_sec_PrtD type 99.7 1.1E-15 2.4E-20 170.4 20.8 151 353-516 321-523 (544)
338 PLN03073 ABC transporter F fam 99.7 1.8E-16 4E-21 179.3 14.4 157 345-516 174-411 (718)
339 TIGR01194 cyc_pep_trnsptr cycl 99.7 3.3E-16 7.1E-21 174.8 15.8 152 353-516 342-540 (555)
340 COG4987 CydC ABC-type transpor 99.7 7.6E-16 1.6E-20 160.4 17.3 140 352-510 340-539 (573)
341 COG4618 ArpD ABC-type protease 99.7 1.3E-15 2.8E-20 157.3 18.5 145 359-513 347-541 (580)
342 TIGR01193 bacteriocin_ABC ABC- 99.7 1.1E-15 2.4E-20 175.7 20.1 158 353-531 478-687 (708)
343 TIGR02203 MsbA_lipidA lipid A 99.7 1.7E-15 3.8E-20 170.3 21.0 148 353-511 335-535 (571)
344 PRK11176 lipid transporter ATP 99.7 2.3E-15 5E-20 169.6 20.7 150 353-516 346-548 (582)
345 cd03270 ABC_UvrA_I The excisio 99.7 7.5E-16 1.6E-20 151.5 14.3 150 355-516 2-208 (226)
346 TIGR00954 3a01203 Peroxysomal 99.7 1.9E-15 4.1E-20 171.2 18.9 145 353-510 456-645 (659)
347 PRK10790 putative multidrug tr 99.7 2E-15 4.3E-20 170.3 19.1 146 353-509 345-540 (592)
348 PRK11160 cysteine/glutathione 99.7 7.6E-16 1.6E-20 172.5 15.5 159 353-531 343-552 (574)
349 PRK13657 cyclic beta-1,2-gluca 99.7 3.7E-15 8E-20 167.9 21.1 147 353-510 339-536 (588)
350 COG4167 SapF ABC-type antimicr 99.7 4.9E-18 1.1E-22 152.3 -1.7 205 363-627 28-249 (267)
351 TIGR01187 potA spermidine/putr 99.7 6E-16 1.3E-20 160.5 13.4 127 387-516 1-171 (325)
352 TIGR02204 MsbA_rel ABC transpo 99.7 3.1E-15 6.7E-20 168.4 20.2 147 353-510 342-541 (576)
353 TIGR00958 3a01208 Conjugate Tr 99.7 2.7E-15 5.8E-20 172.0 19.8 157 353-531 483-692 (711)
354 PRK10535 macrolide transporter 99.7 3.6E-15 7.8E-20 168.8 20.5 152 352-516 8-213 (648)
355 PRK10789 putative multidrug tr 99.7 4.4E-15 9.5E-20 166.3 20.6 145 353-508 318-514 (569)
356 TIGR03375 type_I_sec_LssB type 99.7 4.6E-15 9.9E-20 170.3 21.2 159 353-531 468-678 (694)
357 COG4148 ModC ABC-type molybdat 99.7 4.6E-16 1E-20 149.1 10.7 132 381-516 23-199 (352)
358 TIGR01192 chvA glucan exporter 99.7 3.7E-15 8E-20 167.2 19.7 150 353-516 339-539 (585)
359 TIGR01846 type_I_sec_HlyB type 99.6 6.4E-15 1.4E-19 168.9 21.2 159 353-531 460-670 (694)
360 COG4136 ABC-type uncharacteriz 99.6 6.3E-16 1.4E-20 134.5 9.6 144 353-505 7-196 (213)
361 PRK11174 cysteine/glutathione 99.6 7.9E-15 1.7E-19 165.4 20.9 145 353-508 354-548 (588)
362 KOG0062 ATPase component of AB 99.6 9.2E-16 2E-20 158.4 11.1 139 353-507 85-258 (582)
363 TIGR00955 3a01204 The Eye Pigm 99.6 1.3E-15 2.8E-20 171.5 13.4 144 358-511 35-235 (617)
364 TIGR02857 CydD thiol reductant 99.6 7E-15 1.5E-19 163.7 18.7 145 353-508 325-521 (529)
365 cd03278 ABC_SMC_barmotin Barmo 99.6 2E-15 4.3E-20 145.0 12.2 122 381-509 22-181 (197)
366 COG1132 MdlB ABC-type multidru 99.6 2E-14 4.3E-19 161.3 20.5 160 352-531 332-542 (567)
367 COG1245 Predicted ATPase, RNas 99.6 1.8E-15 4E-20 153.8 10.7 133 380-514 98-283 (591)
368 TIGR02868 CydC thiol reductant 99.6 1.4E-14 3.1E-19 161.2 17.8 140 353-503 339-528 (529)
369 PLN03140 ABC transporter G fam 99.6 3.7E-15 8.1E-20 180.0 13.4 136 360-505 892-1080(1470)
370 PTZ00265 multidrug resistance 99.6 1.1E-14 2.3E-19 176.9 15.5 152 352-516 386-649 (1466)
371 TIGR00956 3a01205 Pleiotropic 99.6 1E-14 2.2E-19 176.9 14.8 137 360-506 775-964 (1394)
372 KOG0927 Predicted transporter 99.6 2.3E-14 5.1E-19 149.0 14.4 202 298-516 330-579 (614)
373 KOG0059 Lipid exporter ABCA1 a 99.6 1E-14 2.3E-19 169.6 12.2 163 353-525 569-780 (885)
374 COG4778 PhnL ABC-type phosphon 99.6 1.9E-14 4E-19 128.1 9.7 144 360-513 23-222 (235)
375 COG4138 BtuD ABC-type cobalami 99.6 2.9E-15 6.4E-20 133.7 4.7 163 381-558 24-233 (248)
376 PLN03232 ABC transporter C fam 99.5 1E-13 2.2E-18 169.9 19.6 159 353-531 1239-1448(1495)
377 PTZ00243 ABC transporter; Prov 99.5 2.6E-14 5.7E-19 174.9 14.2 141 359-509 671-847 (1560)
378 KOG0058 Peptide exporter, ABC 99.5 1.3E-13 2.8E-18 149.1 17.6 159 353-533 470-683 (716)
379 cd03271 ABC_UvrA_II The excisi 99.5 1.3E-13 2.8E-18 137.1 16.5 81 428-509 152-237 (261)
380 PLN03130 ABC transporter C fam 99.5 8.3E-14 1.8E-18 170.8 18.2 159 353-531 1242-1451(1622)
381 TIGR01271 CFTR_protein cystic 99.5 5.3E-14 1.1E-18 172.1 14.9 139 361-509 439-613 (1490)
382 KOG0055 Multidrug/pheromone ex 99.5 1E-13 2.3E-18 158.2 13.9 159 353-525 355-566 (1228)
383 PTZ00265 multidrug resistance 99.5 1E-13 2.2E-18 168.4 14.7 147 353-509 1170-1424(1466)
384 PLN03232 ABC transporter C fam 99.5 4.7E-13 1E-17 164.1 20.1 149 353-511 619-807 (1495)
385 TIGR01271 CFTR_protein cystic 99.5 1.5E-13 3.2E-18 168.1 15.7 159 353-531 1222-1430(1490)
386 PLN03130 ABC transporter C fam 99.5 5.6E-13 1.2E-17 163.6 20.3 148 353-510 619-806 (1622)
387 TIGR00956 3a01205 Pleiotropic 99.5 8.4E-14 1.8E-18 169.0 12.9 135 360-504 73-270 (1394)
388 TIGR00957 MRP_assoc_pro multi 99.5 3.3E-13 7.1E-18 165.7 18.1 148 353-509 641-827 (1522)
389 PF00005 ABC_tran: ABC transpo 99.5 2.2E-14 4.8E-19 129.8 5.8 99 364-471 1-136 (137)
390 TIGR00957 MRP_assoc_pro multi 99.5 7.1E-13 1.5E-17 162.8 20.7 159 353-531 1289-1498(1522)
391 COG4172 ABC-type uncharacteriz 99.5 2.7E-13 5.9E-18 136.3 13.5 171 345-522 273-503 (534)
392 KOG0927 Predicted transporter 99.5 3E-13 6.4E-18 140.9 13.9 154 342-507 67-282 (614)
393 PLN03140 ABC transporter G fam 99.5 7.8E-14 1.7E-18 168.7 11.1 142 360-511 177-406 (1470)
394 cd03279 ABC_sbcCD SbcCD and ot 99.5 2.8E-13 6.1E-18 132.2 13.0 126 381-508 27-197 (213)
395 PTZ00243 ABC transporter; Prov 99.5 1.8E-13 4E-18 167.5 14.4 159 353-531 1313-1523(1560)
396 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.8E-13 3.9E-18 133.0 10.7 127 383-512 26-198 (212)
397 KOG0061 Transporter, ABC super 99.5 2E-13 4.4E-18 152.2 12.3 144 360-512 42-240 (613)
398 KOG0056 Heavy metal exporter H 99.5 1.3E-12 2.8E-17 133.9 16.2 157 353-532 542-752 (790)
399 cd03272 ABC_SMC3_euk Eukaryoti 99.5 3.3E-13 7.1E-18 134.7 11.8 72 439-512 153-229 (243)
400 COG4615 PvdE ABC-type sideroph 99.4 4.8E-12 1E-16 127.0 16.8 135 369-513 337-518 (546)
401 KOG0055 Multidrug/pheromone ex 99.4 7.6E-15 1.6E-19 167.4 -3.7 230 341-624 977-1219(1228)
402 cd03273 ABC_SMC2_euk Eukaryoti 99.4 1.7E-12 3.7E-17 130.0 11.4 74 438-513 160-238 (251)
403 KOG0066 eIF2-interacting prote 99.4 1.2E-12 2.6E-17 132.4 10.0 133 353-506 591-763 (807)
404 COG4170 SapD ABC-type antimicr 99.4 1.3E-14 2.8E-19 133.2 -3.6 219 357-627 16-258 (330)
405 cd03276 ABC_SMC6_euk Eukaryoti 99.4 3.1E-12 6.8E-17 123.0 12.1 120 383-505 22-177 (198)
406 cd03240 ABC_Rad50 The catalyti 99.4 3.9E-12 8.4E-17 123.0 12.0 123 381-510 22-189 (204)
407 COG4178 ABC-type uncharacteriz 99.4 2.6E-11 5.7E-16 131.1 19.5 142 360-513 405-583 (604)
408 cd03275 ABC_SMC1_euk Eukaryoti 99.4 4.1E-12 9E-17 126.9 12.3 69 442-511 153-226 (247)
409 PF05190 MutS_IV: MutS family 99.4 1.1E-11 2.4E-16 103.8 12.8 91 199-290 1-91 (92)
410 COG1245 Predicted ATPase, RNas 99.4 7.5E-12 1.6E-16 127.8 13.4 122 381-511 366-523 (591)
411 COG2401 ABC-type ATPase fused 99.3 8.1E-12 1.8E-16 126.1 10.6 140 371-510 397-574 (593)
412 TIGR00630 uvra excinuclease AB 99.3 4.4E-11 9.6E-16 137.7 17.7 79 429-508 812-895 (924)
413 KOG2355 Predicted ABC-type tra 99.3 1.6E-11 3.5E-16 112.8 10.0 153 353-516 18-218 (291)
414 KOG0065 Pleiotropic drug resis 99.3 3.6E-12 7.9E-17 145.8 6.1 139 358-506 801-992 (1391)
415 PRK00349 uvrA excinuclease ABC 99.3 1.1E-10 2.5E-15 134.7 17.7 79 429-508 814-897 (943)
416 COG5265 ATM1 ABC-type transpor 99.3 2.8E-12 6.2E-17 130.0 4.0 204 353-618 267-486 (497)
417 cd03239 ABC_SMC_head The struc 99.2 4.2E-11 9.2E-16 112.9 11.2 125 383-512 23-166 (178)
418 KOG0062 ATPase component of AB 99.2 9E-11 1.9E-15 121.9 13.9 201 295-508 303-543 (582)
419 cd03277 ABC_SMC5_euk Eukaryoti 99.2 5.1E-11 1.1E-15 115.8 10.7 65 439-504 121-192 (213)
420 KOG0064 Peroxisomal long-chain 99.2 1.8E-09 4E-14 112.3 21.1 136 374-513 499-678 (728)
421 KOG0060 Long-chain acyl-CoA tr 99.2 1.1E-09 2.3E-14 115.6 18.9 140 360-511 447-634 (659)
422 KOG0054 Multidrug resistance-a 99.2 6.8E-10 1.5E-14 130.4 19.3 140 361-510 534-709 (1381)
423 KOG0054 Multidrug resistance-a 99.2 2E-10 4.3E-15 134.8 14.5 158 353-530 1143-1351(1381)
424 PRK00635 excinuclease ABC subu 99.2 1.2E-10 2.6E-15 140.2 13.0 80 428-508 792-876 (1809)
425 KOG0066 eIF2-interacting prote 99.1 3.8E-11 8.3E-16 121.6 5.5 141 354-507 270-472 (807)
426 COG1129 MglA ABC-type sugar tr 99.1 1.4E-09 3E-14 115.6 14.9 160 354-531 264-480 (500)
427 COG1126 GlnQ ABC-type polar am 99.1 4.7E-12 1E-16 118.0 -4.4 142 450-625 77-233 (240)
428 COG3910 Predicted ATPase [Gene 98.9 1.1E-08 2.3E-13 93.3 10.3 63 445-508 130-192 (233)
429 COG1125 OpuBA ABC-type proline 98.9 1E-08 2.2E-13 98.1 10.2 91 424-516 113-206 (309)
430 cd03241 ABC_RecN RecN ATPase i 98.9 3.5E-09 7.6E-14 107.5 7.2 66 444-511 170-240 (276)
431 TIGR02858 spore_III_AA stage I 98.8 4.1E-09 8.9E-14 105.5 6.0 111 383-511 112-236 (270)
432 COG0178 UvrA Excinuclease ATPa 98.8 4E-08 8.6E-13 107.8 13.7 73 438-511 816-892 (935)
433 COG4175 ProV ABC-type proline/ 98.8 1.9E-08 4.2E-13 99.0 9.9 97 424-522 144-241 (386)
434 COG3638 ABC-type phosphate/pho 98.8 2.2E-08 4.8E-13 95.0 9.7 100 427-535 130-231 (258)
435 COG1120 FepC ABC-type cobalami 98.8 5.7E-10 1.2E-14 109.4 -1.5 169 414-623 51-236 (258)
436 COG1135 AbcC ABC-type metal io 98.8 3E-08 6.6E-13 97.7 10.2 103 424-529 121-225 (339)
437 PF02463 SMC_N: RecF/RecN/SMC 98.7 2.6E-07 5.6E-12 90.7 13.3 66 444-513 136-208 (220)
438 PRK00635 excinuclease ABC subu 98.7 2.7E-07 5.9E-12 112.0 15.2 81 430-511 1684-1769(1809)
439 COG1118 CysA ABC-type sulfate/ 98.6 1.4E-07 3.1E-12 92.8 9.8 97 424-522 117-214 (345)
440 COG0444 DppD ABC-type dipeptid 98.6 1.8E-07 4E-12 93.4 10.4 103 424-529 130-237 (316)
441 COG1124 DppF ABC-type dipeptid 98.6 2.7E-07 5.8E-12 88.3 10.3 102 425-535 121-225 (252)
442 COG1117 PstB ABC-type phosphat 98.6 5.1E-09 1.1E-13 97.6 -1.9 94 534-628 148-248 (253)
443 COG1127 Ttg2A ABC-type transpo 98.5 1E-09 2.3E-14 104.1 -7.5 182 406-628 49-245 (263)
444 PRK07721 fliI flagellum-specif 98.5 3E-06 6.5E-11 90.6 17.6 44 361-422 146-189 (438)
445 COG4148 ModC ABC-type molybdat 98.5 4.7E-09 1E-13 101.4 -3.4 158 414-615 47-215 (352)
446 COG3842 PotA ABC-type spermidi 98.5 2E-07 4.3E-12 95.8 7.5 100 424-525 116-216 (352)
447 KOG0063 RNAse L inhibitor, ABC 98.5 3E-07 6.4E-12 93.9 7.6 122 381-511 366-524 (592)
448 COG1116 TauB ABC-type nitrate/ 98.5 1.5E-08 3.3E-13 97.6 -1.7 80 504-605 118-207 (248)
449 COG3845 ABC-type uncharacteriz 98.5 1.4E-06 3E-11 91.3 12.0 151 354-516 263-473 (501)
450 COG4161 ArtP ABC-type arginine 98.4 2.1E-08 4.6E-13 88.9 -1.7 101 504-627 129-239 (242)
451 COG1122 CbiO ABC-type cobalt t 98.4 2.3E-08 4.9E-13 98.0 -1.8 82 534-615 137-225 (235)
452 COG4598 HisP ABC-type histidin 98.4 3.8E-08 8.1E-13 89.1 -0.4 78 534-615 151-238 (256)
453 COG3839 MalK ABC-type sugar tr 98.4 7.4E-07 1.6E-11 91.1 8.4 95 424-520 113-208 (338)
454 COG3840 ThiQ ABC-type thiamine 98.4 6.6E-08 1.4E-12 87.9 0.6 91 503-615 116-216 (231)
455 COG4604 CeuD ABC-type enteroch 98.4 1.3E-06 2.9E-11 80.6 8.9 135 411-560 98-239 (252)
456 cd03242 ABC_RecF RecF is a rec 98.4 1.2E-06 2.7E-11 88.6 8.9 62 443-508 182-253 (270)
457 PRK08533 flagellar accessory p 98.4 4E-06 8.6E-11 82.6 12.0 121 381-502 23-161 (230)
458 PRK13695 putative NTPase; Prov 98.3 1.2E-06 2.5E-11 82.7 7.5 124 384-512 2-144 (174)
459 PRK09473 oppD oligopeptide tra 98.3 5.7E-09 1.2E-13 108.5 -9.1 94 534-627 160-261 (330)
460 PRK15079 oligopeptide ABC tran 98.3 6.7E-09 1.5E-13 107.9 -9.1 94 534-627 160-261 (331)
461 cd01124 KaiC KaiC is a circadi 98.3 3.8E-06 8.2E-11 80.0 10.4 122 384-506 1-142 (187)
462 PRK11308 dppF dipeptide transp 98.3 7E-09 1.5E-13 107.6 -9.2 94 534-627 153-254 (327)
463 PRK11022 dppD dipeptide transp 98.3 7.4E-09 1.6E-13 107.5 -9.1 94 534-627 152-253 (326)
464 cd01131 PilT Pilus retraction 98.3 1.2E-06 2.7E-11 84.3 6.3 106 384-512 3-117 (198)
465 PRK15093 antimicrobial peptide 98.3 8.2E-09 1.8E-13 107.5 -9.6 94 534-627 157-258 (330)
466 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 5E-08 1.1E-12 95.3 -3.7 80 504-606 127-216 (254)
467 TIGR02314 ABC_MetN D-methionin 98.2 1E-08 2.2E-13 106.7 -9.6 82 534-615 139-227 (343)
468 cd00820 PEPCK_HprK Phosphoenol 98.2 6.7E-07 1.5E-11 75.8 3.1 35 361-403 2-36 (107)
469 PRK11650 ugpC glycerol-3-phosp 98.2 1.8E-08 4E-13 105.6 -8.8 93 534-626 133-233 (356)
470 cd01120 RecA-like_NTPases RecA 98.2 1.7E-06 3.7E-11 80.0 5.5 121 384-505 1-138 (165)
471 COG1136 SalX ABC-type antimicr 98.2 3.8E-08 8.2E-13 94.7 -5.9 73 534-607 141-220 (226)
472 TIGR02788 VirB11 P-type DNA tr 98.2 2.2E-06 4.8E-11 88.3 6.3 112 381-513 143-262 (308)
473 PF13555 AAA_29: P-loop contai 98.2 1.7E-06 3.6E-11 65.3 3.4 30 375-404 16-45 (62)
474 cd01130 VirB11-like_ATPase Typ 98.2 5.2E-06 1.1E-10 79.1 7.6 113 381-512 24-143 (186)
475 KOG0063 RNAse L inhibitor, ABC 98.1 6.6E-06 1.4E-10 84.3 8.4 132 381-514 99-283 (592)
476 PF13304 AAA_21: AAA domain; P 98.1 4.1E-06 9E-11 83.8 7.2 65 442-507 234-302 (303)
477 KOG0065 Pleiotropic drug resis 98.1 7.2E-06 1.6E-10 95.3 9.4 146 361-516 128-332 (1391)
478 PRK11432 fbpC ferric transport 98.1 4E-08 8.8E-13 102.8 -8.7 93 534-626 135-235 (351)
479 COG4608 AppF ABC-type oligopep 98.1 1.2E-05 2.7E-10 78.8 9.1 128 423-558 87-217 (268)
480 PRK09452 potA putrescine/sperm 98.1 4.2E-08 9.1E-13 103.4 -8.8 93 534-626 143-243 (375)
481 PRK10851 sulfate/thiosulfate t 98.1 4.1E-08 8.9E-13 102.9 -8.9 94 534-627 135-236 (353)
482 PRK06793 fliI flagellum-specif 98.1 1.7E-05 3.6E-10 84.2 10.5 118 381-510 155-292 (432)
483 TIGR01186 proV glycine betaine 98.1 4E-08 8.7E-13 102.9 -9.1 91 534-624 128-226 (363)
484 TIGR03265 PhnT2 putative 2-ami 98.1 4.4E-08 9.5E-13 102.7 -9.0 92 534-625 133-232 (353)
485 COG4555 NatA ABC-type Na+ tran 98.1 2.8E-07 6E-12 85.3 -2.8 81 534-614 132-218 (245)
486 TIGR03258 PhnT 2-aminoethylpho 98.1 5.8E-08 1.3E-12 101.9 -8.6 91 534-624 136-235 (362)
487 cd03261 ABC_Org_Solvent_Resist 98.1 5.8E-08 1.3E-12 96.4 -8.4 93 534-626 135-234 (235)
488 COG0411 LivG ABC-type branched 98.1 4.2E-07 9.2E-12 87.0 -2.1 82 534-618 148-239 (250)
489 TIGR01026 fliI_yscN ATPase Fli 98.0 8.7E-05 1.9E-09 79.5 14.9 35 361-404 151-185 (440)
490 smart00382 AAA ATPases associa 98.0 3E-05 6.5E-10 69.3 9.2 23 382-404 2-24 (148)
491 TIGR03415 ABC_choXWV_ATP choli 98.0 1.5E-07 3.2E-12 99.2 -7.0 92 534-625 163-262 (382)
492 TIGR00630 uvra excinuclease AB 98.0 2.3E-05 4.9E-10 91.2 10.1 84 429-516 471-558 (924)
493 COG4559 ABC-type hemin transpo 98.0 4.5E-05 9.8E-10 71.5 10.1 133 410-557 97-241 (259)
494 PRK00349 uvrA excinuclease ABC 98.0 2E-05 4.4E-10 91.7 9.7 85 428-516 472-560 (943)
495 PRK06731 flhF flagellar biosyn 98.0 0.00021 4.6E-09 71.6 15.7 106 363-474 57-167 (270)
496 PRK11000 maltose/maltodextrin 98.0 1.2E-07 2.7E-12 100.1 -7.9 93 534-626 132-232 (369)
497 PRK11607 potG putrescine trans 98.0 1.1E-07 2.3E-12 100.5 -8.8 92 534-625 148-247 (377)
498 PRK09183 transposase/IS protei 98.0 2.4E-05 5.1E-10 78.5 8.3 104 381-503 101-205 (259)
499 TIGR01420 pilT_fam pilus retra 98.0 1.3E-05 2.8E-10 83.9 6.5 106 381-508 121-234 (343)
500 PRK06067 flagellar accessory p 97.9 9.3E-05 2E-09 73.3 12.3 124 381-505 24-166 (234)
No 1
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-88 Score=760.64 Aligned_cols=538 Identities=37% Similarity=0.567 Sum_probs=491.2
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.||..|++||||++|.++ ++ .+||||++||+|+||||+|+||+|+.+|++|.++|+.|||+|++|.++..++..
T Consensus 260 m~lD~~t~~nLEl~~~~~~---~~--~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~ 334 (843)
T COG0249 260 MVLDAATRRNLELFSNLRG---NG--KKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREK 334 (843)
T ss_pred EEEcHHHHhcccccccCCC---CC--CCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7899999999999998764 23 678999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHH-HHHHHHHHhh
Q 006859 81 LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSF-LLANIYRSVC 159 (628)
Q Consensus 81 l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~-lL~~i~~~~~ 159 (628)
++..|+++| |++|+++|+..++..+ .++..+++++..++.+.+.+.....+ .+......+.
T Consensus 335 L~~~L~~v~-DleRl~~Rl~~~~~~~-----------------rDl~~l~~~l~~~~~i~~~l~~~~~~~~l~~~~~~i~ 396 (843)
T COG0249 335 LREMLKKVP-DLERLLSRLSLGRASP-----------------RDLLRLRDSLEKIPEIFKLLSSLKSESDLLLLLEDIE 396 (843)
T ss_pred HHHHHhcCc-CHHHHHHHHHcCCCCh-----------------hhHHHHHHHHHHHHHHHHHHhccccchhhhHHhhhhh
Confidence 999999999 9999999999886432 57889999999999999999876633 2333322222
Q ss_pred cchhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccccee
Q 006859 160 ENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFN 239 (628)
Q Consensus 160 ~~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 239 (628)
..+.+.++...++..|+++.... .+ .+.|+.|++++||.+|..+....+++.++..+.+++.+++++++.|+
T Consensus 397 ~~~~~~e~~~ll~~~i~~~~~~~-----~~---~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~slki~~n 468 (843)
T COG0249 397 SLDYLAELLELLETAINEDPPLA-----VR---DGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIKSLKIKYN 468 (843)
T ss_pred ccccHHHHHHHHHHHhhhcchhh-----cc---hhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence 22335578888888888876421 11 16799999999999999999999999999988999999999999999
Q ss_pred cccceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006859 240 NRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAE 319 (628)
Q Consensus 240 ~~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 319 (628)
...||++++++.... .+|..|+......+..+|+|+++++++.++.++...+...+.+++.++.+.+..+.+.++.+..
T Consensus 469 ~v~Gy~ievt~~~~~-~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~ 547 (843)
T COG0249 469 KVYGYYIEVTKSNAK-LVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAK 547 (843)
T ss_pred ccceeEEEechhccc-cCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754 6888898887778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEcCccCccccc-ccceeecccccccCCceEEEEecCCCChhHH
Q 006859 320 VLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTY 398 (628)
Q Consensus 320 ~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~l~~~-~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTl 398 (628)
+++++|++ .|||..+.. .+||+|++.+...+.+..|+||+++.. +..|+|||+.++..+++++||||||||||||
T Consensus 548 aLa~lD~l-~slA~~a~~---~~y~rP~~~~~~~l~i~~gRHPvvE~~~~~~fVpNd~~L~~~~~i~lITGPNM~GKSTy 623 (843)
T COG0249 548 ALAELDVL-SSLAEIAAE---QNYVRPEFVDSNDLEIKEGRHPVVEAVLDNGFVPNDIDLSGNRRIILITGPNMGGKSTY 623 (843)
T ss_pred HHHHHHHH-HHHHHHHhh---CCCCCceecCCCCEEEEecCcchhhhhccCCcccCceeeCCCceEEEEECCCCCccHHH
Confidence 99999999 999999864 899999999886699999999999996 3339999999998899999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 006859 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478 (628)
Q Consensus 399 lk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~ 478 (628)
||++|.+++|||+||||||+++.++++|++|+|+|..|++..+.|||+.||.+++.|+..+++.+|+|+||+|+||++.|
T Consensus 624 lRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~D 703 (843)
T COG0249 624 LRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYD 703 (843)
T ss_pred HHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCC
Q 006859 479 GFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLP 557 (628)
Q Consensus 479 ~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p 557 (628)
|.+++|++++++.+. ++.++|+||+++|.++....+.|.|+||.+...++.++|+|++.+|.+.+ +||+++|+++|+|
T Consensus 704 GlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~-SyGi~VAklaGlP 782 (843)
T COG0249 704 GLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADK-SYGIHVAKLAGLP 782 (843)
T ss_pred hHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccccceeEEEEEEcCCceEEEEEeccCCCCc-cHHHHHHHHhCCC
Confidence 999999999999985 99999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 006859 558 STVIETARSITSRITKKE 575 (628)
Q Consensus 558 ~~~l~~a~~~~~~l~~~~ 575 (628)
.+++++|++++.+|.+..
T Consensus 783 ~~Vi~rA~~il~~le~~~ 800 (843)
T COG0249 783 EEVIERAREILAELEKES 800 (843)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999999997654
No 2
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=1.5e-87 Score=766.97 Aligned_cols=582 Identities=34% Similarity=0.515 Sum_probs=512.2
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.||++|++||||++|..+ + .+||||++||||+||||+|+||+||++|++|+++|++|||+|++|++++.++..
T Consensus 263 m~lD~~tl~~Lei~~~~~~----~--~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~ 336 (854)
T PRK05399 263 LILDAATRRNLELTENLRG----G--RKNSLLSVLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLRED 336 (854)
T ss_pred EEcCHHHHHhccCCccCCC----C--CCCcHHHHhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHH
Confidence 7899999999999998542 2 468999999999999999999999999999999999999999999999888999
Q ss_pred HHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHhhc
Q 006859 81 LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE 160 (628)
Q Consensus 81 l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~lL~~i~~~~~~ 160 (628)
++..|+++| |++|+++|+..+... .+++..+++++..++.+++.+....++.+..+....
T Consensus 337 l~~~L~~i~-Dlerll~ri~~~~~~-----------------~~dl~~l~~~l~~~~~l~~~l~~~~~~~l~~l~~~l-- 396 (854)
T PRK05399 337 LRELLKGVY-DLERLLSRIALGRAN-----------------PRDLAALRDSLEALPELKELLAELDSPLLAELAEQL-- 396 (854)
T ss_pred HHHHHhcCC-CHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHhhc--
Confidence 999999999 999999999765421 357889999999999999999877777787775432
Q ss_pred chhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceec
Q 006859 161 NEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240 (628)
Q Consensus 161 ~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 240 (628)
+.+.++.+.|+.+||++... .....+.|++|+|++||.+|+.+++..+++.++.++++++++++++++.|++
T Consensus 397 -~~~~~l~~~i~~~i~~~~~~-------~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 468 (854)
T PRK05399 397 -DPLEELADLLERAIVEEPPL-------LIRDGGVIADGYDAELDELRALSDNGKDWLAELEARERERTGISSLKVGYNK 468 (854)
T ss_pred -ccHHHHHHHHHHHHccCCch-------hcccCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEcC
Confidence 56788899999999976431 1223567999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006859 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEV 320 (628)
Q Consensus 241 ~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 320 (628)
..||++++|++.. ..+|+.|+..++.++..+|.|+++.++++++.++..++...+..++.++.+.+.++.+.|..+.+.
T Consensus 469 ~~gy~iev~~~~~-~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~ 547 (854)
T PRK05399 469 VFGYYIEVTKANL-DKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLAKA 547 (854)
T ss_pred ceeEEEEEEcchh-hhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998763 469999998877777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEcCccCccccc--ccceeecccccccCCceEEEEecCCCChhHH
Q 006859 321 LCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTY 398 (628)
Q Consensus 321 ~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~l~~~--~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTl 398 (628)
++.||++ +|||.++.. .+||+|.+.+...+.+..|+||+++.. ...++|||+.+++.+++++|+|||||||||+
T Consensus 548 la~lD~l-~s~A~~a~~---~~~~~P~~~~~~~l~i~~~rHP~le~~~~~~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~ 623 (854)
T PRK05399 548 LAELDVL-ASLAEVAEE---NNYVRPEFTDDPGIDIEEGRHPVVEQVLGGEPFVPNDCDLDEERRLLLITGPNMAGKSTY 623 (854)
T ss_pred HHHHHHH-HHHHHHHHH---CCccccEEeCCCCEEEEeccCcEEecccCCCceEecceeeCCCCcEEEEECCCCCCcHHH
Confidence 9999999 999999875 889999999887899999999999864 4679999999998889999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 006859 399 LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478 (628)
Q Consensus 399 lk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~ 478 (628)
||+++.+++|||+||||||.++.++++|++|+++|..|++..+.|||+.+|.+++.+++.++.++|+|+||||+||++.|
T Consensus 624 lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d 703 (854)
T PRK05399 624 MRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD 703 (854)
T ss_pred HHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCC
Q 006859 479 GFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLP 557 (628)
Q Consensus 479 ~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p 557 (628)
|.++++++++++.+. +++++++||++++.++.+.+++|.++||.+...++.++|+|++.+|.+. .|||+.+|+++|+|
T Consensus 704 g~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~-~SyGi~VA~laGlP 782 (854)
T PRK05399 704 GLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAAD-KSYGIHVAKLAGLP 782 (854)
T ss_pred hHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCC-CcHHHHHHHHcCCC
Confidence 999999999999986 6999999999999999999999999999999888999999999999997 58999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-----HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 006859 558 STVIETARSITSRITKKEVKRMEINCLQYKQIQ-----MLYHAAQRLICLKYSNQDEESIRHALQNLKESF 623 (628)
Q Consensus 558 ~~~l~~a~~~~~~l~~~~~~~~~~~~~~~h~~~-----~~~~~~~~~~~l~~g~~~~~~~~~~l~~~~~~~ 623 (628)
.+++++|+++++.+++......... ...+++. ....+-+++-.++-.++.+....+.|.++++..
T Consensus 783 ~~VI~rA~~i~~~le~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tp~~a~~~l~~l~~~~ 852 (854)
T PRK05399 783 ASVIKRAREILAQLESASEKAKAAS-AEEDQLSLFAEPEESPLLEALKALDPDNLTPREALNLLYELKKLL 852 (854)
T ss_pred HHHHHHHHHHHHHHhhccccccccc-ccccccccccccccHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999985321000000 0000110 012355566666666677777777777777653
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=1.6e-87 Score=761.64 Aligned_cols=534 Identities=33% Similarity=0.541 Sum_probs=488.8
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.||++|++||||++|..+ | ++||||+++|+|+||||+|+||+||++|++|+++|++|||+|++|.+++.++..
T Consensus 249 m~lD~~t~~~LEl~~~~~~---~---~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~ 322 (840)
T TIGR01070 249 MQLDAATRRNLELTENLRG---G---KQNTLFSVLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREG 322 (840)
T ss_pred EEeCHHHHHhccCCccCCC---C---CCCcHHHHHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHH
Confidence 8899999999999998653 2 579999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHhhc
Q 006859 81 LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE 160 (628)
Q Consensus 81 l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~lL~~i~~~~~~ 160 (628)
++..|+++| |++|+++|+..+... .++++.+++++..++.+++.+....++.+..+...+
T Consensus 323 l~~~L~~i~-Dlerll~ri~~~~~~-----------------~~dl~~l~~~l~~~~~l~~~l~~~~~~~l~~l~~~l-- 382 (840)
T TIGR01070 323 LRPLLKEVG-DLERLAARVALGNAR-----------------PRDLARLRTSLEQLPELRALLEELEGPTLQALAAQI-- 382 (840)
T ss_pred HHHHhccCc-CHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--
Confidence 999999999 999999999866421 367889999999999999999877677777664433
Q ss_pred chhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceec
Q 006859 161 NEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240 (628)
Q Consensus 161 ~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 240 (628)
+.+.++.+.|+.+|+++... ..+....|++|+|++||.+|+.+.+..+++.++.++++++++++++++.|+.
T Consensus 383 -~~~~~l~~~i~~~i~~~~~~-------~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i~~lk~~~~~ 454 (840)
T TIGR01070 383 -DDFSELLELLEAALIENPPL-------VVRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNA 454 (840)
T ss_pred -ccHHHHHHHHHHHHhcCCcc-------ccccCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Confidence 56778889999999876431 1122356899999999999999999999999999999999999999999999
Q ss_pred ccceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006859 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEV 320 (628)
Q Consensus 241 ~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 320 (628)
..||++++|++.. ..+|+.|+...+..+..+|.++++.++++++.++..++...+.+++.++.+.+.++.+.+.++.+.
T Consensus 455 ~~gy~iev~~~~~-~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~ 533 (840)
T TIGR01070 455 VFGYYIEVTRGQL-HLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARA 533 (840)
T ss_pred CceEEEEEehhhh-hcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998753 469999998877667788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEcCccCccccc-ccceeecccccccCCceEEEEecCCCChhHHH
Q 006859 321 LCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYL 399 (628)
Q Consensus 321 ~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~l~~~-~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTll 399 (628)
++.||++ +|+|.++.. .+||+|.+.+...+.+..|+||+++.. ...++|||+.++..+++++|||||||||||+|
T Consensus 534 la~lD~l-~s~A~~a~~---~~~~~P~~~~~~~i~i~~~RHP~le~~~~~~~VpNdi~l~~~~~~~iITGPNmgGKSt~l 609 (840)
T TIGR01070 534 LAELDVL-ANLAEVAET---LHYTRPRFGDDPQLRIREGRHPVVEQVLRTPFVPNDLEMAHNRRMLLITGPNMGGKSTYM 609 (840)
T ss_pred HHHHHHH-HHHHHHHHH---CCCcCceecCCCcEEEEeeECHHHHhccCCCeEeeeeecCCCccEEEEECCCCCCchHHH
Confidence 9999999 999999875 889999998887899999999999853 35799999999977789999999999999999
Q ss_pred HHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 006859 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479 (628)
Q Consensus 400 k~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~ 479 (628)
|+++.+++|||+||||||.++.++++|++|+++|..|++..+.|||+.+|.+++.|++.++.++|+++||+|+||++.||
T Consensus 610 rqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg 689 (840)
T TIGR01070 610 RQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDG 689 (840)
T ss_pred HHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCH
Q 006859 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPS 558 (628)
Q Consensus 480 ~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~ 558 (628)
.++++++++++.+ .++.++++||++++..+....++|.++||.+..+++.++|+|++.+|.+. .+||+.+|+++|+|.
T Consensus 690 ~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~-~Sygi~VA~laGlP~ 768 (840)
T TIGR01070 690 LALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVLPGPAS-KSYGLAVAALAGLPK 768 (840)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCC-CcHHHHHHHHcCCCH
Confidence 9999999999998 79999999999999999999999999999998899999999999999987 589999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 006859 559 TVIETARSITSRITKK 574 (628)
Q Consensus 559 ~~l~~a~~~~~~l~~~ 574 (628)
+++++|+++++.|+..
T Consensus 769 ~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 769 EVIARARQILTQLEAR 784 (840)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999854
No 4
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=9.9e-80 Score=637.08 Aligned_cols=545 Identities=29% Similarity=0.457 Sum_probs=440.4
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHH-hC--chh
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELM-SN--EQL 77 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~-~~--~~~ 77 (628)
|.|+++|+++||||.|..+ |+ .+|||||+||||.|.+|.|+||.|+++||+|...|++|||||+++. .+ ...
T Consensus 458 Mtls~ntLq~Leif~nqtd---~~--~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshssnS~v 532 (1070)
T KOG0218|consen 458 MTLSPNTLQSLEIFTNQTD---GS--EKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHSSNSIV 532 (1070)
T ss_pred eeechhhhhceeeeeecCC---CC--cccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcccchHH
Confidence 8899999999999998665 44 8999999999999999999999999999999999999999999993 33 336
Q ss_pred HHHHHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHh---------hhhH
Q 006859 78 FFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLK---------DAQS 148 (628)
Q Consensus 78 ~~~l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~---------~~~s 148 (628)
+.++.+.|.++| |+.|-++||..++..+. +++-..++.+.. +-+.+..+...++ ...+
T Consensus 533 f~si~~~l~rlp-Dl~rgL~rIy~~tCtp~---------~eff~vlk~iy~---a~s~fq~~~~~~~~~~~s~~~s~~qS 599 (1070)
T KOG0218|consen 533 FESINQMLNRLP-DLLRGLNRIYYGTCTPR---------KEFFFVLKQIYS---AVSHFQMHQSYLEHFKSSDGRSGKQS 599 (1070)
T ss_pred HHHHHHHHHhCc-HhHhhHHHHhcccCCcH---------HHHHHHHHHHHH---HHHHHHHHhhhhhhhccccccchhcc
Confidence 788999999999 89999999988753221 222222233333 3333333333332 2347
Q ss_pred HHHHHHHHHhhcc---hhHHHHHHHHHhhhccccccccc--hhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHH
Q 006859 149 FLLANIYRSVCEN---EKYASIRKRIGEVIDEDVLHARV--PFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLAN 223 (628)
Q Consensus 149 ~lL~~i~~~~~~~---~~~~~l~~~I~~~id~~~~~~~~--~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~ 223 (628)
++|+.++.++.++ ...+.++.++ |........ ...... ..|..-+...+...++|+... ....+.+.++
T Consensus 600 ~LLrrlisel~~p~~~s~~~hfL~ml----n~~aa~~gnk~d~fkd~-snfpl~~e~~di~~virE~~m-s~~~~~~hLa 673 (1070)
T KOG0218|consen 600 PLLRRLISELNEPLSTSQLPHFLTML----NVSAAMEGNKDDQFKDF-SNFPLYDESEDIIKVIRESEM-SRSQLKEHLA 673 (1070)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHh----hHHHHhhCChHHhhhhh-ccCcchhhhhhHHHHHHHHHH-HHHHHHHHHH
Confidence 8999887766332 2233344433 332210000 000000 001111111112222232221 2224566788
Q ss_pred HHHHhcCCCCcccceecccceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006859 224 KYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEAL 303 (628)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l 303 (628)
++++.+..|++++.....-.|+++++.+.. .++|.+|+.++.++...+|.|+.+.++-.++....+............|
T Consensus 674 eiRk~Lk~pnlef~~vsgv~flIEvkns~~-kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sF 752 (1070)
T KOG0218|consen 674 EIRKYLKRPNLEFRQVSGVDFLIEVKNSQI-KKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSF 752 (1070)
T ss_pred HHHHHhcCCCceeEEecCeeEEEEeccccc-ccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 888889999988777788889999987654 3699999999999999999999999999888888777777777788899
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccCC-CCEEEEcCccCccccc-ccceeecccccccC
Q 006859 304 VDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN-GPLAIDGGRHPILESI-HNDFIPNNIFISEA 381 (628)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~l~~~-~~~~~~~~~~l~~~ 381 (628)
.++|.+|+..|+++...+|.+||+ .|+|..+.. .+||||+|.++ ..+.++.||||+++.+ ...|+|||+.+++.
T Consensus 753 L~kiSehYtelrkat~~LatlDCi-~SlA~~s~n---~nYvRPtfvd~~~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~e 828 (1070)
T KOG0218|consen 753 LNKISEHYTELRKATLNLATLDCI-LSLAATSCN---VNYVRPTFVDGQQEIIIKNGRHPVIESLLVDYFVPNDIMLSPE 828 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcc---CCccCcccccchhhhhhhcCCCchHHHHhhhccCCCcceecCC
Confidence 999999999999999999999999 999999875 89999999987 5699999999999964 55689999999954
Q ss_pred -CceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCC
Q 006859 382 -ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460 (628)
Q Consensus 382 -g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~ 460 (628)
+++.+|+||||+|||.++|++|.+.+|||+||||||+.+.++++|.+++|||..|++..+.|+|+.+|.....|+..++
T Consensus 829 gerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat 908 (1070)
T KOG0218|consen 829 GERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKAT 908 (1070)
T ss_pred CceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCc-ceeEEEEEEEEe-------CCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYP-NVKILHFYVVIR-------NNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~-~v~~~~~~~~~~-------~~~~~ 531 (628)
..+++|+||+|+||++.||.++++++++++.+ .+|.++|+||++.+.++...++ .|.+|||+.... .+.++
T Consensus 909 ~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVt 988 (1070)
T KOG0218|consen 909 KRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVT 988 (1070)
T ss_pred cchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhh
Confidence 99999999999999999999999999999986 5799999999999999998775 589999998762 34689
Q ss_pred EeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHhh
Q 006859 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575 (628)
Q Consensus 532 ~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~~~~l~~~~ 575 (628)
|+|+|..|.+.+ +||+++|+++++|.+++.+|..+.++|+++.
T Consensus 989 fLYklvrGlasr-SyGlnVAklA~ip~sii~rA~siSeeleke~ 1031 (1070)
T KOG0218|consen 989 FLYKLVRGLASR-SYGLNVAKLARIPKSIINRAFSISEELEKES 1031 (1070)
T ss_pred hHHHHhhhhhhc-cccccHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999985 8999999999999999999999999997653
No 5
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-77 Score=620.89 Aligned_cols=601 Identities=42% Similarity=0.694 Sum_probs=532.4
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.||..+.++|||+.+.. .+.+-+|++++|+|.|++|.|.||..+++|++|...|+.|+++++++..+++++..
T Consensus 259 ~~id~~~~~~lelV~~~~------~kn~~~l~~vl~~T~t~~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~ 332 (867)
T KOG0220|consen 259 AMIDSSSAQSLELVINNQ------YKNNHTLFGVLNYTKTPGGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFG 332 (867)
T ss_pred eeeecccccceEEechhh------hhcccceeeeeeeeecccchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhh
Confidence 579999999999998743 34688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHhhc
Q 006859 81 LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE 160 (628)
Q Consensus 81 l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~lL~~i~~~~~~ 160 (628)
++..+++++ |++++++.+..-+ +.+++ ......+..+..|+.+++.+..++..+.+..+++++.. .+...
T Consensus 333 Lr~~~k~~~-dld~~~s~~~~~~---~~~~i-----~~~~s~I~~~~~Lk~tL~lv~~~~~al~~~~s~~~~e~-~~~~~ 402 (867)
T KOG0220|consen 333 LRSVIKRFL-DLDQLLSVLVQIP---TQDTV-----NAAESKINNLIYLKHTLELVDPLKIALKNCNSNLLREY-YGSFK 402 (867)
T ss_pred hHHHHhhhh-hHHHHHHHHHhhh---hHHhh-----hcchhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH-HHHhc
Confidence 999999999 8999998764322 11111 22345577888999999999999999988888888887 45567
Q ss_pred chhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceec
Q 006859 161 NEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240 (628)
Q Consensus 161 ~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 240 (628)
++.+..|.+.|.++||++..+.+.++..+.|+||++|.+++..||..|+.|.++.++..+..+++.+++ .++++..|+.
T Consensus 403 ~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~-~~nl~~~f~s 481 (867)
T KOG0220|consen 403 DKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKF-SLNLRLSFSS 481 (867)
T ss_pred chHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cccccccccc
Confidence 788999999999999999999999999999999999999999999999999999999988888888877 6678999999
Q ss_pred ccceEEEEecccc---cCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006859 241 RQGFYLSIPHKDI---QGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLL 317 (628)
Q Consensus 241 ~~g~~i~v~~~~~---~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 317 (628)
..||++.++...+ ...+|..|+..++..+++.|+|..+..+|.|+++...+++.....++.++++.+..+++.+..+
T Consensus 482 arGF~~ri~~~~~~~~~~~lP~~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~i 561 (867)
T KOG0220|consen 482 ARGFFIRITTDCIALPSDTLPSEFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKL 561 (867)
T ss_pred cccEEEEeeccccccccccCchhhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999998743 2369999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEcCccCcccccccc-eeecccccccCCceEEEEecCCCChh
Q 006859 318 AEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHND-FIPNNIFISEAANMVIVTGPNMSGKS 396 (628)
Q Consensus 318 ~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~l~~~g~~~~i~GpNGsGKS 396 (628)
.++++.||.+ +|||..... .+|++|++.+. +.++.||||+|+-++.+ ++.|+..+++..++.+|+||||||||
T Consensus 562 ae~~~~lD~l-~sfa~~~~~---~~y~~P~fT~s--laI~qGRHPILe~i~~ek~i~N~t~~t~~s~f~IITGPNMsGKS 635 (867)
T KOG0220|consen 562 AEAVSMLDML-CSFAHACTL---SDYVRPEFTDS--LAIKQGRHPILEKISAEKPIANNTYVTEGSNFLIITGPNMSGKS 635 (867)
T ss_pred HHHHHHHHHH-HHHHHhhcc---ccccccccCCc--eeeccCCCchhhhhcccCcccCcceeecccceEEEECCCCCcch
Confidence 9999999999 999988765 68999999876 99999999999997554 78889999988899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCh
Q 006859 397 TYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSS 476 (628)
Q Consensus 397 Tllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~ 476 (628)
|+||++|.+++||||||||||..+.+++++++|+|+|-.|.+.+..|+|+.||++.++|++.++..+|++|||+|+||+.
T Consensus 636 TYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSt 715 (867)
T KOG0220|consen 636 TYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTST 715 (867)
T ss_pred HHHHHHHHHHHHHHhccCcchhhccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE-eeeeecCCCCCCcHHHHHHHHCC
Q 006859 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF-KFQLKDGPRHVPHYGLLLAEVAG 555 (628)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~l~~G~~~~~~~a~~la~~~g 555 (628)
.||.++.+++.|++.+...+++++||+.+++.++..+|.|.++||.+..+++...+ .|+|+.|+.....||..+|++.-
T Consensus 716 eeGiaityAvCE~lL~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~ 795 (867)
T KOG0220|consen 716 EEGIAITYAVCEYLLSLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSS 795 (867)
T ss_pred ccchhhHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEec
Confidence 99999999999999999999999999999999999999999999999998888776 79999999988899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhccC
Q 006859 556 LPSTVIETARSITSRITKKEVK-RMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDGR 627 (628)
Q Consensus 556 ~p~~~l~~a~~~~~~l~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~l~~~~~~~~~~~ 627 (628)
+|++++..|+.+.-.+..+-.. ...+. ...+-..+++.+.++..- .|+-++..+...++.|++.|.+++
T Consensus 796 iPd~i~e~a~~~~t~i~A~v~~~~rd~~--~~~rq~~Vy~~a~~~~~t-~gn~~e~~~~~klk~l~k~~ve~~ 865 (867)
T KOG0220|consen 796 LPDSIVEDAKEITTQITAQILQNQRDTP--EMERQRAVYHLATRLVQT-AGNSDEDSLRIKLKNLKKKYKEDF 865 (867)
T ss_pred CCHHHHHhhhHHHHHHHHHHHhhccCch--HHHHHHHHHHHHHHHHHh-hCCCCcHHHHHHHHHHHHHHHhhc
Confidence 9999999999865555433211 00010 112222344455555443 466689999999999999998875
No 6
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-70 Score=588.63 Aligned_cols=545 Identities=28% Similarity=0.385 Sum_probs=457.3
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.+|+.|++|||||.|..+ |+ .+||||.++|+|.||||+|||+.|+++|++|.+.|++||++|+.|...+.....
T Consensus 538 mvlD~~tL~NleIf~Ns~~---G~--~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~ 612 (1125)
T KOG0217|consen 538 MVLDGATLENLEIFSNSRN---GG--DEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTK 612 (1125)
T ss_pred eeecchhhhhhhhhccCCC---CC--CchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHH
Confidence 8899999999999999877 55 799999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHhhc
Q 006859 81 LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE 160 (628)
Q Consensus 81 l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~lL~~i~~~~~~ 160 (628)
+...|+++| |+||++.|++...-+ ..++++.++.-+-.++...+.+..+.+.+.... ...-|.....+
T Consensus 613 ~~e~l~klP-DlERlL~Rih~~~~~---------~~k~i~~f~rvLegfk~~~~~~~~~~~v~~~~~--~~~~is~~~~~ 680 (1125)
T KOG0217|consen 613 VGETLKKLP-DLERLLVRIHNGGEK---------NKKKIADFIRVLEGFKEINKLLGSLINVLKEGE--GLRLISELLES 680 (1125)
T ss_pred HHHHHhhCC-cHHHHHHHHHhcCcc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHhcC
Confidence 999999999 899999999876421 113333333333333333333333333332221 11122111222
Q ss_pred chhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceec
Q 006859 161 NEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240 (628)
Q Consensus 161 ~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 240 (628)
.|.+..-+......+|.... .+...+....|.|.++|.+-+...++.+++..++..++.+++++++.++...
T Consensus 681 ~p~~~~~i~~~~~af~r~~a--------~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~c~si~~~~vG 752 (1125)
T KOG0217|consen 681 MPNLSEEIENWTEAFDRVKA--------VKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLGCSSIVFVDVG 752 (1125)
T ss_pred cchhhHHHHHHHHHHHHHHH--------hhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCceeEeecC
Confidence 23333333444445554322 2345677888999999999999999999999999999999999999988899
Q ss_pred ccceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006859 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEV 320 (628)
Q Consensus 241 ~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 320 (628)
+.-|++++|.+. ....|..|+..+......+|.++++..+-..+.++............+++..+|.++...+++.++.
T Consensus 753 k~~y~lEvP~n~-~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~ 831 (1125)
T KOG0217|consen 753 KDVYQLEVPENG-GVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKA 831 (1125)
T ss_pred ceEEEEecCccc-CCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999999864 2234445888887777889999999999999999988888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCC--C--CEEEEcCccCcccccc--cceeecccccc-c-CCceEEEEecCC
Q 006859 321 LCLLDMIVNSFAHTISTKPVDRYTRPHFTEN--G--PLAIDGGRHPILESIH--NDFIPNNIFIS-E-AANMVIVTGPNM 392 (628)
Q Consensus 321 ~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~--~--~l~~~~~~~~~l~~~~--~~~~~~~~~l~-~-~g~~~~i~GpNG 392 (628)
++.+||+ +|+|.++.. .+..+|+|.+.+. . -+.+...+||++..-. ..|+||++.+. . ......+|||||
T Consensus 832 ~a~iD~l-~sla~~s~~-~~~~~Crp~i~~~~dt~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~e~~~~llTGpNm 909 (1125)
T KOG0217|consen 832 LASIDCL-LSLAETSKG-LGGPMCRPEIVESTDTPGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGAEENREGLLTGPNM 909 (1125)
T ss_pred HHHHHHH-HHHHHhhcc-CCCCcccceeecccCCCceeEEecccCceeecCcCCCccccchhhccccccceeeeeccCCc
Confidence 9999999 999998863 4467999998653 2 3888999999998753 46999999998 2 233455999999
Q ss_pred CChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 006859 393 SGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR 472 (628)
Q Consensus 393 sGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~ 472 (628)
+|||||||+.+.+++|||+||+||+....++.++++++++|..|.+-.+.|+|..+..+...|+..++..+||++||+|+
T Consensus 910 gGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGR 989 (1125)
T KOG0217|consen 910 GGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGR 989 (1125)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCe-eeEeeeeecCCCCCCcHHHHH
Q 006859 473 ATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR-LDFKFQLKDGPRHVPHYGLLL 550 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~l~~G~~~~~~~a~~l 550 (628)
||+..||.+|+.++++++.. .+|..+|+||++.+.......|+|..+||...++.+. ++|+|++..|.|. .+||..+
T Consensus 990 Gtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cp-kSyG~~v 1068 (1125)
T KOG0217|consen 990 GTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICP-KSYGFNV 1068 (1125)
T ss_pred cccccCCcchHHHHHHHHHhcccccCCccccccchhHhhhcCccccchhheeeecCCccEEEeehhccCCCC-cchhHHH
Confidence 99999999999999999997 6899999999999999888999999999999997776 9999999999998 5899999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHh
Q 006859 551 AEVAGLPSTVIETARSITSRITKK 574 (628)
Q Consensus 551 a~~~g~p~~~l~~a~~~~~~l~~~ 574 (628)
|+++|+|..++++|.....++...
T Consensus 1069 Armaglp~~vi~~a~~~a~E~e~~ 1092 (1125)
T KOG0217|consen 1069 ARMAGLPDQVIDRAEIKAHELEKS 1092 (1125)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999887777543
No 7
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.7e-67 Score=553.47 Aligned_cols=536 Identities=31% Similarity=0.513 Sum_probs=465.7
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhh-hhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFH-MLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFF 79 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~-~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~ 79 (628)
|.+|..|.++|++|+...+...+ ..+|.. +||||.|++|.|||++|+.+|++|++.|++|+|.|+.++.+...+.
T Consensus 288 m~ld~~av~alnlf~~~~~~~~~----s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~~rq 363 (902)
T KOG0219|consen 288 MRLDSAAVRALNLFPLPYNNPEK----SNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINERHDLVEALVEDAEIRQ 363 (902)
T ss_pred hhHHHHHHHHHhhcCCCCCCccc----cchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhHHHH
Confidence 78999999999999865432223 356766 9999999999999999999999999999999999999999988777
Q ss_pred HHH-HHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhH---HHHHHHH
Q 006859 80 GLS-QFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQS---FLLANIY 155 (628)
Q Consensus 80 ~l~-~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s---~lL~~i~ 155 (628)
.++ +.|.++| |+-|+..++. . + .++++..+++....+|.+.+.|..... .+|..-+
T Consensus 364 ~L~~~lL~~~p-di~rl~~~l~-~-~-----------------~L~d~~r~yq~~~~l~~~~~~l~~~~~~~~~ll~~~l 423 (902)
T KOG0219|consen 364 KLRDDLLRRIP-DISRLARRLM-K-A-----------------NLQDVNRIYQAAKLLPTVVQVLISLSESHNRLLKSPL 423 (902)
T ss_pred HHHHHHhhcCh-hHHHhhhhhh-h-c-----------------chHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhhhh
Confidence 764 6788998 8999988775 1 1 134566667777777777666644332 2222211
Q ss_pred HHhhcchhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC--
Q 006859 156 RSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPN-- 233 (628)
Q Consensus 156 ~~~~~~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~-- 233 (628)
... ...+.++..++++++|.+.. ..+.|.||+++|++|-.+|+.++++...++++..+....++...
T Consensus 424 ~~~--~~~~~kf~~~ve~t~D~da~---------ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~~dl~~D~~k 492 (902)
T KOG0219|consen 424 TEH--LKKLEKFQEMVETTVDLDAE---------EENEYRVRVDFDEELQELREKLDELERKMEKLHKKVSADLGLDPKK 492 (902)
T ss_pred hhh--hhhHHHHHHHHHHHhhHhHH---------hcCcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 111 24566788889999998876 23678999999999999999999999999999999888887643
Q ss_pred -cccceecccceEEEEecccccC-CCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006859 234 -LKLPFNNRQGFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDV 311 (628)
Q Consensus 234 -l~~~~~~~~g~~i~v~~~~~~~-~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 311 (628)
+++.-+...||++.+++++.+. +-.+.|...+..++-++|+|..+..+|++..+...++...+..+.++++.....|.
T Consensus 493 klkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia~tY~ 572 (902)
T KOG0219|consen 493 QLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIAATYT 572 (902)
T ss_pred ceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 7788889999999999987432 12467888776666799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccCCC--CEEEEcCccCccccc-ccceeecccccc-cCCceEEE
Q 006859 312 SVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENG--PLAIDGGRHPILESI-HNDFIPNNIFIS-EAANMVIV 387 (628)
Q Consensus 312 ~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~l~~~-~~~~~~~~~~l~-~~g~~~~i 387 (628)
+.+..+...+|.||++ .|||.++...+ ..|+||.+.+.+ .+..+.++||+++.- ...|.|||+.+. .++++.+|
T Consensus 573 Ppleal~~vlAhLDv~-~SFa~~st~a~-~pYvRP~~l~~gs~rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~~Ii 650 (902)
T KOG0219|consen 573 PPLEALNQVLAHLDVF-VSFAHAATVAP-IPYVRPKLLPLGSKRLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLII 650 (902)
T ss_pred CcHHHHHHHHHHHHhh-eeehhhcccCC-CCccCccccccchhHHHHHhcccchhhccccCCCCCCccccccCCceEEEE
Confidence 9999999999999999 99999887544 789999987765 377889999999985 567999999998 67899999
Q ss_pred EecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEE
Q 006859 388 TGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467 (628)
Q Consensus 388 ~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~ll 467 (628)
+||||+||||++|+.+-+++|||||||||++.+.++++|.++++.|.+|...++.|+||.+|-..+.|++.++..+++++
T Consensus 651 TGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~Sliii 730 (902)
T KOG0219|consen 651 TGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIII 730 (902)
T ss_pred eCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcH
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHY 546 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 546 (628)
||||+||+..||..++|++-+++.. .||..+|+||++++..+....+.|++.|+.+.+.++.+...|++.+|.++. |+
T Consensus 731 DELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~-SF 809 (902)
T KOG0219|consen 731 DELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQ-SF 809 (902)
T ss_pred eccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccC-cc
Confidence 9999999999999999999999874 689999999999999999999999999999999999999999999999985 89
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHh
Q 006859 547 GLLLAEVAGLPSTVIETARSITSRITKK 574 (628)
Q Consensus 547 a~~la~~~g~p~~~l~~a~~~~~~l~~~ 574 (628)
|+.+|+++|+|..+++.|++..+++++.
T Consensus 810 Gi~VA~~a~fp~~vie~A~~~~~ele~~ 837 (902)
T KOG0219|consen 810 GIHVAELVGFPEHVIEMAKQKAEELEDE 837 (902)
T ss_pred hhhHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877654
No 8
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-65 Score=523.99 Aligned_cols=571 Identities=25% Similarity=0.377 Sum_probs=473.8
Q ss_pred CccChhhHHhcccccCCccccC--CCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCc--h
Q 006859 1 MNIDATSVRNLEIIEPLHSALW--GTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNE--Q 76 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~--g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~--~ 76 (628)
|.||.+|+++|+||++.+.... ..-+.+.|||+++|+|....|+|+||.|+.+|.+|..+|..||++|++|.... +
T Consensus 237 v~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~ 316 (849)
T KOG0221|consen 237 VNIDQNTISALQIFPSESHPSKVKSGLKEGLSLFGLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNAD 316 (849)
T ss_pred eeeccchHHHHHhcccccccchhhhhhhcchhHHHHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhH
Confidence 6799999999999998654211 11234679999999999999999999999999999999999999999999865 4
Q ss_pred hHHHHHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhh--HHHHHHH
Q 006859 77 LFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQ--SFLLANI 154 (628)
Q Consensus 77 ~~~~l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~--s~lL~~i 154 (628)
.+..+.+.|+++| ++--+++++..+..+. .+|-.+.+++...-.+.++++..+ ..+.+.+
T Consensus 317 ~~~~Ls~~lgr~k-~~~~~~~~~~sg~t~l-----------------~~W~~~~stv~~~~~i~~~~rslp~s~~~~~~~ 378 (849)
T KOG0221|consen 317 MAQMLSRLLGRIK-NVPLILKRMKSGHTKL-----------------SDWQVLYSTVYSALGIRDACRSLPQSIQLFRDI 378 (849)
T ss_pred HHHHHHHHHhhcc-cHHHHHHHHhcCCcee-----------------chHHHHHHHHHHHHHHHHHHHhCccchhhhhHH
Confidence 5678899999998 7888889887775433 234444555555445555554332 2222222
Q ss_pred HHHhhcchhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CC
Q 006859 155 YRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELK--LP 232 (628)
Q Consensus 155 ~~~~~~~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~--~~ 232 (628)
++. ....+.++...+.++||.+.+ +.++.+.|.+|+|++||+.|..|..+...+.+.+++....++ +|
T Consensus 379 -~~~-~~~~l~eia~~~g~vIdF~~S--------~~~~r~Tv~~giD~elDE~r~~y~~lp~~Lt~vAr~e~~~L~~~~p 448 (849)
T KOG0221|consen 379 -AQE-FSDDLHEIASLIGKVIDFEGS--------LAENRFTVLPGIDPELDEKRRRYMGLPSFLTEVARKELENLDSRIP 448 (849)
T ss_pred -HHH-HHHHHHHHHHHhhheeccccc--------cccceEEecCCCChHHHHHHHHHccchHHHHHHHHHHHHhhCCCCC
Confidence 111 124567788889999999876 567789999999999999999999999999999988877765 57
Q ss_pred CcccceecccceEEEEecccccCC--CC-cceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006859 233 NLKLPFNNRQGFYLSIPHKDIQGK--LP-STFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIRE 309 (628)
Q Consensus 233 ~l~~~~~~~~g~~i~v~~~~~~~~--~p-~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 309 (628)
++.++|.|..||++++|+--.... .| ..|..+..+...++|.+....+|.+.+.++..++...+..++-.+..++.+
T Consensus 449 sv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~ 528 (849)
T KOG0221|consen 449 SVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLA 528 (849)
T ss_pred ceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccceeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHH
Confidence 889999999999999998431111 11 225555566677899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccCCCC-EEEEcCccCcccccccceeecccccc-cCCceEEE
Q 006859 310 DVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGP-LAIDGGRHPILESIHNDFIPNNIFIS-EAANMVIV 387 (628)
Q Consensus 310 ~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~l~-~~g~~~~i 387 (628)
+...+.+.....++||++ .|||..+.. ++|.+|.++++.- +.+.+|+|+..+-+-.+|+||++..+ +.|++.+|
T Consensus 529 rk~~lt~~l~laSrldvL-ls~a~~aa~---~gy~~P~lv~e~~il~I~ngrh~l~e~~~dtfvPNst~iggdkgri~vI 604 (849)
T KOG0221|consen 529 RKAVLTRVLDLASRLDVL-LSLASAAAD---YGYSRPRLVPEVLILRIQNGRHPLMELCADTFVPNSTEIGGDKGRIKVI 604 (849)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHh---cCCCCCccccHHHHHHHHcCChhHHHHHHHhcCCCceeecCCCceEEEE
Confidence 999999999999999999 999998875 8999999987753 67899999998888789999999999 78999999
Q ss_pred EecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEE
Q 006859 388 TGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467 (628)
Q Consensus 388 ~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~ll 467 (628)
+|||.||||.++|+++.+++++|+||||||+.+.++++|+++++++..++...+.|+|+....|++.+++.++..+|+++
T Consensus 605 TGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlI 684 (849)
T KOG0221|consen 605 TGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLI 684 (849)
T ss_pred eCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCC---cEEEEEcCChhHHHHhhh--CcceeEEEEEEEE-eCCeeeEeeeeecCCC
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLK---AYTIFASHMENLSELATI--YPNVKILHFYVVI-RNNRLDFKFQLKDGPR 541 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~---~~vi~~tH~~~l~~~~~~--~~~v~~~~~~~~~-~~~~~~~~~~l~~G~~ 541 (628)
||+|.||+..||.++..+++.++...| ++++++||+++|.+..-. .+-+.++.|.+.- +.+.++|.|+..+|..
T Consensus 685 DEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~ 764 (849)
T KOG0221|consen 685 DEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLA 764 (849)
T ss_pred hhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchh
Confidence 999999999999999999999888754 579999999998764432 3335555555443 6788999999999998
Q ss_pred CCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 006859 542 HVPHYGLLLAEVAGLPSTVIETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKY 604 (628)
Q Consensus 542 ~~~~~a~~la~~~g~p~~~l~~a~~~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~ 604 (628)
. .++|+.+|+.+|+|+.++.||.++.+.+++........-.....+++..+..+|++..++-
T Consensus 765 k-~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg~~vk~~k~~l~~~q~~~~q~~Vdkf~~lDl 826 (849)
T KOG0221|consen 765 K-ASFALHTAKQAGLPDKVVARAKEVSDAIRSGKPVKPVKDLLKKNQMENCQTLVDKFMKLDL 826 (849)
T ss_pred h-hcccchhHhhcCCCHHHHHHHHHHHHHHHcCCCchhhhhhhhhhHHHHHHHHHHHHHHhcc
Confidence 7 5899999999999999999999999998875433222234567788888899999888743
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=3e-62 Score=552.40 Aligned_cols=490 Identities=21% Similarity=0.279 Sum_probs=424.0
Q ss_pred hhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHhcCCccHHHHHhhHhcCCCCcccccc
Q 006859 32 FHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVL 111 (628)
Q Consensus 32 ~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~ 111 (628)
-.+-++|.|++|+|+++. ++|++|+++|+.||+.|+++... +.......+..++ |+++++.++..+. .
T Consensus 16 ~~l~~~~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~~--~~~~~~~~l~~~~-Di~~~l~r~~~g~--~----- 83 (782)
T PRK00409 16 EQLKTFAASELGKEKVLQ--LDPETDFEEVEELLEETDEAAKL--LRLKGLPPFEGVK-DIDDALKRAEKGG--V----- 83 (782)
T ss_pred HHHHhHcCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHH--HHhcCCCCCCCCc-cHHHHHHHHhCCC--C-----
Confidence 356789999999999999 79999999999999999999732 1222334577887 8999999987542 1
Q ss_pred chhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhh----hHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccccchhh
Q 006859 112 DVDNAKKSQTLISSIILLKTALDALPLLAKVLKDA----QSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFV 187 (628)
Q Consensus 112 ~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~----~s~lL~~i~~~~~~~~~~~~l~~~I~~~id~~~~~~~~~~~ 187 (628)
....+++.+.+++..+..+++.+... ..+.|..+...+ +.++++.+.|..+||+++.
T Consensus 84 ---------l~~~eL~~i~~~l~~~~~l~~~l~~~~~~~~~~~L~~~~~~l---~~~~~l~~~i~~~id~~g~------- 144 (782)
T PRK00409 84 ---------LSGDELLEIAKTLRYFRQLKRFIEDLEEEEELPILEEWVAKI---RTLPELEQEIHNCIDEEGE------- 144 (782)
T ss_pred ---------CCHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHcC---cCcHHHHHHHHHHhCCCCE-------
Confidence 11246788888888888888888653 235666554433 5677889999999998754
Q ss_pred hcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-CCc--ccceecccceEEEEecccccCCCCcceEEE
Q 006859 188 ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL-PNL--KLPFNNRQGFYLSIPHKDIQGKLPSTFIQV 264 (628)
Q Consensus 188 ~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~-~~l--~~~~~~~~g~~i~v~~~~~~~~~p~~~~~~ 264 (628)
|+++++++|+.+|+.+.++.+++.+.++++....+. ..+ ++......+|++.++. ++...+|+.|+..
T Consensus 145 --------i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~-~~~~~~~g~v~~~ 215 (782)
T PRK00409 145 --------VKDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKA-EYKHAIKGIVHDQ 215 (782)
T ss_pred --------ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEech-hhhccCCCceeeE
Confidence 899999999999999999999999998888765543 223 3334445555555544 4455799999999
Q ss_pred eeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcc
Q 006859 265 VKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYT 344 (628)
Q Consensus 265 ~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~ 344 (628)
+.+|.++|++|.++.++|+++.++..++..++..++.+|...+.++...+..+.+.++.||++ +|+|.++.. .+||
T Consensus 216 s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l-~a~a~~a~~---~~~~ 291 (782)
T PRK00409 216 SSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFI-FARARYAKA---LKAT 291 (782)
T ss_pred ECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---CCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999875 8899
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC-CCch
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF-STIR 423 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~-~~i~ 423 (628)
+|.+.+...+.+..++||+++. ..++|||+.++..+++++||||||+||||+||+++.+++|+|+|||||+.+ ..++
T Consensus 292 ~P~~~~~~~i~l~~~rHPll~~--~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~ 369 (782)
T PRK00409 292 FPLFNDEGKIDLRQARHPLLDG--EKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIP 369 (782)
T ss_pred cceEcCCCcEEEcCcCCceecc--CceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcccc
Confidence 9999987789999999999965 469999999998788999999999999999999999999999999999996 6899
Q ss_pred HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
+++.+++++|..+++..+.|+||++|+++..+++.++.++++++|||++|||+.++.+++.++++++.+.+++++++||+
T Consensus 370 ~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~ 449 (782)
T PRK00409 370 VFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHY 449 (782)
T ss_pred ccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCh
Confidence 99999999999999999999999999999999999999999999999999999999998888999998889999999999
Q ss_pred hhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Q 006859 504 ENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSR 570 (628)
Q Consensus 504 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~~~~ 570 (628)
+++..+....+.+.++++. ++.+.+.|+|++..|.++ .|+|+.+|+.+|+|.+++++|++++..
T Consensus 450 ~el~~~~~~~~~v~~~~~~--~d~~~l~~~Ykl~~G~~g-~S~a~~iA~~~Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 450 KELKALMYNREGVENASVE--FDEETLRPTYRLLIGIPG-KSNAFEIAKRLGLPENIIEEAKKLIGE 513 (782)
T ss_pred HHHHHHHhcCCCeEEEEEE--EecCcCcEEEEEeeCCCC-CcHHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 9999888878888877765 467889999999999997 589999999999999999999996543
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=4.6e-58 Score=516.84 Aligned_cols=491 Identities=23% Similarity=0.305 Sum_probs=419.1
Q ss_pred hhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHhcCCccHHHHHhhHhcCCCCcccccc
Q 006859 32 FHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVL 111 (628)
Q Consensus 32 ~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~ 111 (628)
=.+.++|.|++|++.+++ +.|++|+++|+.||+.++++..... ...+..++ |+++++.++..+. . +
T Consensus 16 ~~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~-----~~~l~~~~-di~~~l~r~~~g~--~----l 81 (771)
T TIGR01069 16 ENLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN-----NVRFFGFE-DIRELLKRAELGG--I----V 81 (771)
T ss_pred HHHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc-----cCCcCCCc-cHHHHHHHHhcCC--c----C
Confidence 357899999999999999 9999999999999999999987543 23477887 8999999886542 1 0
Q ss_pred chhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhh-hHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccccchhhhcc
Q 006859 112 DVDNAKKSQTLISSIILLKTALDALPLLAKVLKDA-QSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVART 190 (628)
Q Consensus 112 ~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~-~s~lL~~i~~~~~~~~~~~~l~~~I~~~id~~~~~~~~~~~~~~ 190 (628)
. -..+++.++.++..+..++..+... ..+.|..+... ...++.+.+.|..+||+++.
T Consensus 82 ~---------~~e~l~~i~~~l~~~~~l~~~l~~~~~~~~L~~~~~~---l~~~~~l~~~i~~~id~~g~---------- 139 (771)
T TIGR01069 82 K---------GLEYILVIQNALKTVKHLKVLSEHVLDLEILFHLRLN---LITLPPLENDIIACIDDDGK---------- 139 (771)
T ss_pred C---------hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHhc---CCCcHHHHHHHHHHhCCCCE----------
Confidence 0 0123788888888888888887643 23555555333 35677889999999998764
Q ss_pred cccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCC-Cc--ccceecccceEEEEecccccCCCCcceEEEeec
Q 006859 191 QQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLP-NL--KLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKH 267 (628)
Q Consensus 191 ~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~-~l--~~~~~~~~g~~i~v~~~~~~~~~p~~~~~~~~~ 267 (628)
|+++++++|+.+|+....+.+++.+.++.+....+.. .+ .+......+|.+.++ .+++..+|+.++..+.+
T Consensus 140 -----i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~r~vipvk-~~~~~~i~g~v~~~S~s 213 (771)
T TIGR01069 140 -----VKDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLK-SGFKGKIKGIVHDTSSS 213 (771)
T ss_pred -----ECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECCEEEEEee-HHHhhcCCCeEEEEeCC
Confidence 8899999999999999999999998888775543321 11 122233334444443 34556799999999999
Q ss_pred cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 006859 268 GNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347 (628)
Q Consensus 268 g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~ 347 (628)
|.++|++|.++.++|+++.++..++..++..++.+|...+.++.+.+..+.+.++.+|++ .|+|.++.. .++++|.
T Consensus 214 g~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l-~a~a~~a~~---~~~~~P~ 289 (771)
T TIGR01069 214 GETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSL-QARARYAKA---VKGEFPM 289 (771)
T ss_pred CCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---CCCeece
Confidence 999999999999999999999999999999999999999999999999999999999999 999999875 8899999
Q ss_pred ccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC-CCchHHH
Q 006859 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF-STIRVVD 426 (628)
Q Consensus 348 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~-~~i~~~~ 426 (628)
+.+.+.+.+..++||++++ ..++|||+.++...++++|+||||+|||||||+|+|+.+|+|.|++||+.. ..+++++
T Consensus 290 ~~~~~~i~l~~~rhPll~~--~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d 367 (771)
T TIGR01069 290 PSFTGKIILENARHPLLKE--PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFE 367 (771)
T ss_pred ecCCCCEEEccccCceecC--CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchh
Confidence 9877789999999999975 359999999986668999999999999999999999999999999999986 5789999
Q ss_pred HHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 427 RIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 427 ~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
+++..++..+++..+.|+||++|++++.++..++.++++|+|||++|||+.++.++++++++++.+.+++++++||+.++
T Consensus 368 ~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 368 EIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred heeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 99999999999999999999999999999998899999999999999999999999889999998889999999999999
Q ss_pred HHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 006859 507 SELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573 (628)
Q Consensus 507 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~~~~l~~ 573 (628)
..+....+.|.+++|. ++.+++.|+|+|..|.++ .|+|+.+|+.+|+|.+++++|++++.....
T Consensus 448 ~~~~~~~~~v~~~~~~--~d~~~l~p~Ykl~~G~~g-~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~ 511 (771)
T TIGR01069 448 KALMYNNEGVENASVL--FDEETLSPTYKLLKGIPG-ESYAFEIAQRYGIPHFIIEQAKTFYGEFKE 511 (771)
T ss_pred HHHhcCCCCeEEeEEE--EcCCCCceEEEECCCCCC-CcHHHHHHHHhCcCHHHHHHHHHHHHhhHH
Confidence 9888888888888774 567789999999999998 589999999999999999999997765543
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=9.4e-44 Score=348.74 Aligned_cols=230 Identities=46% Similarity=0.777 Sum_probs=200.4
Q ss_pred cccccccCCCCEEEEcCccCccccc--ccceeecccccccCC-ceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC
Q 006859 343 YTRPHFTENGPLAIDGGRHPILESI--HNDFIPNNIFISEAA-NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419 (628)
Q Consensus 343 ~~~p~~~~~~~l~~~~~~~~~l~~~--~~~~~~~~~~l~~~g-~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~ 419 (628)
||+|.+.++..+.++.++||+++.. +..++|||+.++... ++++|+|||+|||||+||+|+.+++|||+||||||+.
T Consensus 1 y~~P~~~~~~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~ 80 (235)
T PF00488_consen 1 YCRPKISEEKSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES 80 (235)
T ss_dssp EB-EEEESTTEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE
T ss_pred CcccEEcCCCCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc
Confidence 7999999988899999999999986 678999999999655 8999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEE
Q 006859 420 STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTI 498 (628)
Q Consensus 420 ~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi 498 (628)
+.+++++.++++++..|++..+.|+|..+++++..++..++..+|+|+||+|+||++.++.+++++++++|.+ .++.++
T Consensus 81 ~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i 160 (235)
T PF00488_consen 81 AEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVI 160 (235)
T ss_dssp EEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEE
T ss_pred cccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 599999
Q ss_pred EEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q 006859 499 FASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITK 573 (628)
Q Consensus 499 ~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~~~~l~~ 573 (628)
++||++++.++....+.+.++||.+...++.+.|+|++..|.+. .++|+.+|+.+|+|.+++++|+++++.|++
T Consensus 161 ~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~~G~~~-~S~ai~iA~~~g~p~~II~rA~~i~~~l~~ 234 (235)
T PF00488_consen 161 IATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLKEGICS-SSYAIEIAKLAGLPEEIIERAKEILKQLEE 234 (235)
T ss_dssp EEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--S-STCHHHHHHHTT--HHHHHHHHHHHHHHHT
T ss_pred EEeccchhHHHhhhCccccccceeeeeeccccceeEEEeECCCC-CcHHHHHHHHhCcCHHHHHHHHHHHHHHhc
Confidence 99999999998888899999999999999999999999999987 689999999999999999999999998864
No 12
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=6.4e-39 Score=332.17 Aligned_cols=307 Identities=32% Similarity=0.463 Sum_probs=256.9
Q ss_pred cCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHhcCCccHHHHHhhHhcCCCCcc
Q 006859 28 KRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVT 107 (628)
Q Consensus 28 ~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~l~~~L~~~~~Dlerll~~~~~~~~~~~ 107 (628)
+||||++||+|+|++|+|+||+|+++|++|+++|++||++|++|.+++.+...++..|+++| |++|++.++..+..
T Consensus 1 ~~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~-Di~~~l~~~~~~~~--- 76 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIP-DLERLLSRIERGRA--- 76 (308)
T ss_pred CCCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCC-cHHHHHHHHHcCCC---
Confidence 48999999999999999999999999999999999999999999999888888999999998 99999999865421
Q ss_pred ccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccccchhh
Q 006859 108 SKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFV 187 (628)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~lL~~i~~~~~~~~~~~~l~~~I~~~id~~~~~~~~~~~ 187 (628)
...+++.++.++..+..+.+.+......++..+...+.+ + .......+.+.++.....
T Consensus 77 --------------~~~el~~l~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~------ 134 (308)
T smart00533 77 --------------SPRDLLRLYDSLEGLKEIRQLLESLDGPLLGLLLKVILE-P-LLELLELLLELLNDDDPL------ 134 (308)
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcc-c-hHHHHHHHHHHhccCCcc------
Confidence 135788899999999989888866543322222122111 1 112223333333221110
Q ss_pred hcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceecccceEEEEecccccCCCCcceEEEeec
Q 006859 188 ARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKH 267 (628)
Q Consensus 188 ~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~p~~~~~~~~~ 267 (628)
.....+.|++|++++||.+|+.+.++.+++++..+++.++++.+.+++.|.+..||++.+|.+. ...+|+.|+.++++
T Consensus 135 -~~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~-~~~~~~~~~~~s~s 212 (308)
T smart00533 135 -EVNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSE-AKKVPKDFIRRSSL 212 (308)
T ss_pred -cccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeccEEEEEEecchh-hccCChHHHHHhhh
Confidence 0122367899999999999999999999999999999888888888999999999999999875 34699999999999
Q ss_pred cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccc
Q 006859 268 GNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPH 347 (628)
Q Consensus 268 g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~ 347 (628)
|++++|+|.++.++++++.++..++..++..++.++.+.+.++.+.+..+.+.++.||++ +|+|.++.. .+||+|.
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l-~s~a~~a~~---~~~~~P~ 288 (308)
T smart00533 213 KNTERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVL-LSLATLAAE---GNYVRPE 288 (308)
T ss_pred cccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH---CCCcCCe
Confidence 999999999999999999999999999999999999999999999999999999999999 999999875 7899999
Q ss_pred ccCCCCEEEEcCccCcccc
Q 006859 348 FTENGPLAIDGGRHPILES 366 (628)
Q Consensus 348 ~~~~~~l~~~~~~~~~l~~ 366 (628)
+.+.+.+.+..++||+++.
T Consensus 289 i~~~~~l~i~~~rHPlle~ 307 (308)
T smart00533 289 FVDSGELEIKNGRHPVLEL 307 (308)
T ss_pred eCCCCCEEEeeCCCCcccC
Confidence 9988789999999999874
No 13
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.4e-38 Score=346.00 Aligned_cols=483 Identities=22% Similarity=0.290 Sum_probs=393.0
Q ss_pred hhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHhcCCccHHHHHhhHhcCCCCccccccc
Q 006859 33 HMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLD 112 (628)
Q Consensus 33 ~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~ 112 (628)
.+..++.|+.|+-+++. +.|.+|.+.|+..++.++++....+..... .+.++. |+...+.++..+. .
T Consensus 15 ~~~~~~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g~~--~~~~l~-~i~~~l~~~e~g~-~------- 81 (753)
T COG1193 15 LLASYAQSSLGLEELKN--LKPRTDLELIEEELSETAEALDILEDEGLP--PLGGLN-DVSEALGRLEKGG-R------- 81 (753)
T ss_pred HHHHhccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccCCC--Cchhhh-hhHHHHHHHhhcc-c-------
Confidence 36788999999999999 999999999999999999987643210000 123332 5555555554221 1
Q ss_pred hhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccccchhhhcccc
Q 006859 113 VDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQ 192 (628)
Q Consensus 113 ~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~lL~~i~~~~~~~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~ 192 (628)
....+++.+...+.....++..++....-. ...+. ....++.+...|..++|.++.
T Consensus 82 --------l~~~el~~i~~~l~~~~~lkr~~~~~e~~~-~~~~~---~~~~~~~l~~~i~~~id~~g~------------ 137 (753)
T COG1193 82 --------LHVEELLEISDFLRGFRALKRAIKKLERIK-RTLAL---ALIELSDLELEINIPIDDDGL------------ 137 (753)
T ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHH---hhhcchHHHHHHhhhhccccc------------
Confidence 112455566666666666655554433211 12212 236677788889989988765
Q ss_pred cccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc-cceecccceEEEEecccccCCCCcceEEEeeccceE
Q 006859 193 CFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLK-LPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNI 271 (628)
Q Consensus 193 ~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~ 271 (628)
|++..+..|+.+|.......+++.+.+..+...-..+.+. -....++|+++...+..++..+|+..++.+.+|.|+
T Consensus 138 ---i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~~~~~L~e~~v~~r~~r~vlpvk~~fk~~i~giv~d~sssg~tl 214 (753)
T COG1193 138 ---IKDRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQDRIVTTRDGREVLPVKAEFKGAIKGIVHDTSSSGATL 214 (753)
T ss_pred ---ccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHhhhhceEeccCCeEEeHHHHHhhhhcCceEeecccccCee
Confidence 7788899999999888777777766665553322111122 124566677765555677778999999999999999
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccCC
Q 006859 272 HCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTEN 351 (628)
Q Consensus 272 ~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~ 351 (628)
+..|.....+++++..+..+...+...++..+...+.++++.+..+...++.+|++ .+.+.+++. ..++.|.+++.
T Consensus 215 ~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i-~Ak~~~~~~---~~~v~P~~~~~ 290 (753)
T COG1193 215 YIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFI-EAKVRYAKA---LKGVKPDFSND 290 (753)
T ss_pred eecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHH-HHHHHHHHh---hccCCCccCCC
Confidence 99999999999999999988888899999999999999999999999999999999 888888874 78999999987
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCC-CchHHHHHHh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS-TIRVVDRIFT 430 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~-~i~~~~~~~~ 430 (628)
+.+....++||++.+. +|+++.+...-..++|+|||.+|||+.||+++.+.+|+|.|.++|+..+ .++++..++.
T Consensus 291 ~~l~l~~~~HPll~~~----v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~a 366 (753)
T COG1193 291 GVLELLDARHPLLKED----VPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFA 366 (753)
T ss_pred ceEEeccccCccCccc----cccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhh
Confidence 8899999999999873 7899999877789999999999999999999999999999999999998 8999999999
Q ss_pred hcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 431 RMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 431 ~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
.+|..+++.+..|+||+.|..+..++.... +++++||+|+||+|.+|.+++.++++++.+.++.++.+||+.++..+.
T Consensus 367 DIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~~~tTH~~elk~~~ 444 (753)
T COG1193 367 DIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVATTHYRELKALA 444 (753)
T ss_pred ccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccceehHhhHHHHHHHH
Confidence 999999999999999999999999995443 999999999999999999999999999999999999999999999888
Q ss_pred hhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHH
Q 006859 511 TIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSIT 568 (628)
Q Consensus 511 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~~ 568 (628)
...+.+.+..|. ++.+++.++|++..|.+.+ ++|..+|..+|+|..+++.|...+
T Consensus 445 ~~~~~v~nas~~--fd~etL~ptY~l~~G~~g~-S~Af~ia~rlGl~~~iie~a~~~~ 499 (753)
T COG1193 445 AEREGVENASME--FDAETLRPTYRLLEGVPGR-SNAFDIALRLGLPEPIIEEAKTEF 499 (753)
T ss_pred hcchhhhchhhh--hhHHHhhHHHHHhcCCccc-chHHHHHHHcCCCHHHHHHHHHhc
Confidence 877777666643 5677888999999999985 899999999999999999998833
No 14
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4.4e-39 Score=311.03 Aligned_cols=208 Identities=39% Similarity=0.678 Sum_probs=195.0
Q ss_pred EEcCccCccccc-ccceeecccccc-cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcC
Q 006859 356 IDGGRHPILESI-HNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMG 433 (628)
Q Consensus 356 ~~~~~~~~l~~~-~~~~~~~~~~l~-~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~ 433 (628)
++.++||+++.. ...++|||++++ .+|++++|+||||+||||++++++++++|+|+|||||++.+.++++++++++++
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~ 81 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIG 81 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecC
Confidence 467899999743 357999999998 568999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhh
Q 006859 434 TVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATI 512 (628)
Q Consensus 434 ~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~ 512 (628)
..|++..+.|+|+.+++++..+++.++.++|+++|||++||++.++.++++++++++.+. +++++++||++++......
T Consensus 82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~ 161 (218)
T cd03286 82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHE 161 (218)
T ss_pred cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999886 9999999999999888877
Q ss_pred CcceeEEEEEEEEeC------CeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHH
Q 006859 513 YPNVKILHFYVVIRN------NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETA 564 (628)
Q Consensus 513 ~~~v~~~~~~~~~~~------~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a 564 (628)
.+.+.++||.+.+++ +++.|+|+|.+|.+. .+||+.+|+.+|+|.+++++|
T Consensus 162 ~~~v~~~~m~~~~~~~~~~~~~~~~~~Ykl~~G~~~-~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 162 HGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICP-KSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred CcceEEEEEEEEEeccccCCCCceEEEEEECcCCCC-CcHHHHHHHHhCcCHHHHhcC
Confidence 889999999998865 789999999999987 589999999999999999986
No 15
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4.9e-38 Score=306.52 Aligned_cols=215 Identities=40% Similarity=0.735 Sum_probs=199.8
Q ss_pred EEcCccCcccc-cccceeeccccccc-CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcC
Q 006859 356 IDGGRHPILES-IHNDFIPNNIFISE-AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMG 433 (628)
Q Consensus 356 ~~~~~~~~l~~-~~~~~~~~~~~l~~-~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~ 433 (628)
++.++||+++. ...+++|||++++. .+++++|+||||+|||||+|+|+.+.+|+|+|||||+..+.+++++.++++++
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~ 81 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG 81 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec
Confidence 46789999987 46679999999994 78999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhh
Q 006859 434 TVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATI 512 (628)
Q Consensus 434 ~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~ 512 (628)
..+....+.|+|+.++.+++.+++.+++++++++|||++||++.|+.++.+.+++++.+ .+++++++||+.++.+++++
T Consensus 82 l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~ 161 (222)
T cd03285 82 ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161 (222)
T ss_pred cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhc
Confidence 99999999999999999999999988999999999999999999999998888888875 58999999999999999998
Q ss_pred CcceeEEEEEEEEeC--CeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 006859 513 YPNVKILHFYVVIRN--NRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRI 571 (628)
Q Consensus 513 ~~~v~~~~~~~~~~~--~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~~~~l 571 (628)
.+.+.++++.....+ +.+.|+|+|.+|.+. .++|+.+|+.+|+|.+++++|+++.+.+
T Consensus 162 ~~~i~~g~~~~~~~~~~~~~~~~Y~l~~G~~~-~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 162 VPNVKNLHVTALTDDASRTLTMLYKVEKGACD-QSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred CCCeEEEEEEEEEeCCCCcEeEEEEEeeCCCC-CcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 889999999887765 899999999999987 6899999999999999999999988765
No 16
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5.3e-38 Score=304.35 Aligned_cols=210 Identities=40% Similarity=0.737 Sum_probs=193.9
Q ss_pred EEEEcCccCccccc-ccceeecccccc-cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhh
Q 006859 354 LAIDGGRHPILESI-HNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431 (628)
Q Consensus 354 l~~~~~~~~~l~~~-~~~~~~~~~~l~-~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~ 431 (628)
+.++.++||+++.. ...++|||++++ ..|++++|+||||+||||++|+++++.+++|+|+++|+....++++++++++
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~ 80 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR 80 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE
Confidence 35788999999874 347999999998 6789999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHh
Q 006859 432 MGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELA 510 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~ 510 (628)
++..|++..+.|+|+.+++++..+++.++.++++|+|||++||++.|+.++.+++++++.+. +++++++||++++.++.
T Consensus 81 ~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 81 MGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred ecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999886 89999999999999888
Q ss_pred hhC-cceeEEEEEEEE--------eCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHH
Q 006859 511 TIY-PNVKILHFYVVI--------RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETA 564 (628)
Q Consensus 511 ~~~-~~v~~~~~~~~~--------~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a 564 (628)
... +.+.++||.+.. ++++++|+|+|.+|.+. .+||+.+|+.+|+|++++++|
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~Ykl~~G~~~-~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 161 RRFEGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLAS-RSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred HhcccCeEEEEEEEEEeccccccccCCcEEEEEEECcCCCC-CcHHHHHHHHhCcCHHHHhcC
Confidence 664 568899998653 35789999999999987 589999999999999999986
No 17
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=1.2e-36 Score=295.68 Aligned_cols=211 Identities=47% Similarity=0.796 Sum_probs=198.4
Q ss_pred EEcCccCccccc--ccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcC
Q 006859 356 IDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMG 433 (628)
Q Consensus 356 ~~~~~~~~l~~~--~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~ 433 (628)
+..++||+++.. ...++|||++++...++++|+||||||||||||+++++.+++|+|+++|+..+.++++++++.+++
T Consensus 2 i~~~~hp~~~~~~~~~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~ 81 (216)
T cd03284 2 IEGGRHPVVEQVLDNEPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIG 81 (216)
T ss_pred cccccCCEEeeccCCCceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCC
Confidence 567899999885 367899999999666999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhh
Q 006859 434 TVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATI 512 (628)
Q Consensus 434 ~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~ 512 (628)
..+++..+.|+|..++.++..++..+++++++++|||++||++.|+.++.+.+++++.+. +++++++||+.++.++.+.
T Consensus 82 ~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~ 161 (216)
T cd03284 82 ASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGK 161 (216)
T ss_pred chhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhc
Confidence 999999999999999999999999899999999999999999999998888899999887 8999999999999999999
Q ss_pred CcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHH
Q 006859 513 YPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSI 567 (628)
Q Consensus 513 ~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~ 567 (628)
.+.+.++||....+++++.|+|++..|.+. .+||+.+|+.+|+|.+++++|+++
T Consensus 162 ~~~v~~~~~~~~~~~~~l~~~ykl~~G~~~-~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 162 LPRVKNFHVAVKEKGGGVVFLHKIVEGAAD-KSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred CCCeEEEEEEEEeeCCeEEEEEEECcCCCC-CcHHHHHHHHhCcCHHHHHHHHHh
Confidence 999999999999999999999999999986 699999999999999999999985
No 18
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.5e-35 Score=284.59 Aligned_cols=200 Identities=39% Similarity=0.697 Sum_probs=185.9
Q ss_pred EEcCccCcccccccceeecccccc-cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCC
Q 006859 356 IDGGRHPILESIHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434 (628)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~l~-~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~ 434 (628)
+..++||+++....++++||++++ ..|++++|+||||+||||++|+++++++|+|+||++|+..+.+++++.++++++.
T Consensus 2 i~~~~hpll~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~ 81 (204)
T cd03282 2 IRDSRHPILDRDKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSN 81 (204)
T ss_pred cccccCCeEeccCCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCC
Confidence 467899999866677999999998 5679999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCc
Q 006859 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYP 514 (628)
Q Consensus 435 ~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~ 514 (628)
.++..++.|+|+.|++++..+++.+++++++++|||++||++.++.++.+++++++.+.+++++++||+.++.+.....+
T Consensus 82 ~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~~~ 161 (204)
T cd03282 82 DDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGNKS 161 (204)
T ss_pred ccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhcCC
Confidence 99999999999999999999999889999999999999999999999989999999988999999999999999888888
Q ss_pred ceeEEEEEEEE-eCCeeeEeeeeecCCCCCCcHHHHHHHHCC
Q 006859 515 NVKILHFYVVI-RNNRLDFKFQLKDGPRHVPHYGLLLAEVAG 555 (628)
Q Consensus 515 ~v~~~~~~~~~-~~~~~~~~~~l~~G~~~~~~~a~~la~~~g 555 (628)
.+.++||.... .++.+.|+|++.+|.+...+||+.+|+++.
T Consensus 162 ~v~~~~~~~~~~~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 162 CVVHLHMKAQSINSNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred CeEEEEEEEEEcCCCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 89999998877 458999999999999985799999999753
No 19
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3.7e-34 Score=277.64 Aligned_cols=200 Identities=36% Similarity=0.644 Sum_probs=182.3
Q ss_pred EEcCccCcccccccceeecccccccCC-ceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCC
Q 006859 356 IDGGRHPILESIHNDFIPNNIFISEAA-NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGT 434 (628)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~l~~~g-~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~ 434 (628)
+..++||+++.....++|||+.++..+ ++++|+||||+|||||||+++++.+++|+|+++|+..+.++++++++++++.
T Consensus 2 i~~~rHPll~~~~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~ 81 (213)
T cd03281 2 IQGGRHPLLELFVDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSS 81 (213)
T ss_pred cccccCCEEeccCCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCC
Confidence 467899999875567999999998654 8999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC---CcEEEEEcCChhHHHHhh
Q 006859 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL---KAYTIFASHMENLSELAT 511 (628)
Q Consensus 435 ~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~---~~~vi~~tH~~~l~~~~~ 511 (628)
.+++..+.|+|+.+++++..++..++.++++++|||++|||+.++.++.+++++.+.+. +.+++++||++++.+...
T Consensus 82 ~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 82 RESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred ccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999888888888764 358999999999887665
Q ss_pred --hCcceeEEEEEEEEe------CCeeeEeeeeecCCCCCCcHHHHHHHHCCC
Q 006859 512 --IYPNVKILHFYVVIR------NNRLDFKFQLKDGPRHVPHYGLLLAEVAGL 556 (628)
Q Consensus 512 --~~~~v~~~~~~~~~~------~~~~~~~~~l~~G~~~~~~~a~~la~~~g~ 556 (628)
..+.+.++||.+..+ ++++.|+|+|.+|.+. .+||+.+|+.+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~-~s~a~~~a~~~g~ 213 (213)
T cd03281 162 LPERLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLAD-TSFAIHCAKLAGI 213 (213)
T ss_pred hccCCceEEEEEEEEEcCCccCCCCcEEEEEEEeeCCCC-CCHHHHHHHHcCC
Confidence 567899999999886 4899999999999996 5899999999985
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.9e-33 Score=267.68 Aligned_cols=183 Identities=51% Similarity=0.763 Sum_probs=172.7
Q ss_pred eEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCc
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERS 463 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~ 463 (628)
+++|+||||+|||||+|+++.+.+++|+|+++|+....++++++++++++..++...+.|+|++++++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCC
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRH 542 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~ 542 (628)
++++|||++|||+.++..+.+.+++.+.+. +++++++||++++..+.+..++|.++||.+...++.+.|+|++.+|.+.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~~~ 160 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGVAG 160 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECCCC
Confidence 999999999999999998888888888874 8999999999999998888889999999999888999999999999876
Q ss_pred CCcHHHHHHHHCCCCHHHHHHHHHH
Q 006859 543 VPHYGLLLAEVAGLPSTVIETARSI 567 (628)
Q Consensus 543 ~~~~a~~la~~~g~p~~~l~~a~~~ 567 (628)
.+||+.+|+.+|+|.+++++|+++
T Consensus 161 -~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 161 -KSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred -CcHHHHHHHHhCCCHHHHHHHHHh
Confidence 589999999999999999999875
No 21
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=8.6e-32 Score=258.27 Aligned_cols=196 Identities=29% Similarity=0.413 Sum_probs=177.4
Q ss_pred EEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCc
Q 006859 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTV 435 (628)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~ 435 (628)
++.++||+++ ..++++||++++. |++++|+||||||||||+|+|+|.+++++.|+++|+....++ .+.++..+...
T Consensus 2 ~~~~~hp~~~--~~~~v~n~i~l~~-g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~~~ 77 (199)
T cd03283 2 AKNLGHPLIG--REKRVANDIDMEK-KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIRVS 77 (199)
T ss_pred CcccCCCeec--CCCeecceEEEcC-CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEeccch
Confidence 4578999997 3568999999995 699999999999999999999999999999999999888887 67888888888
Q ss_pred cccccCcCchHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhC
Q 006859 436 DNLESNSSTFMTEMKETAFVMQNVS--ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 436 ~~~~~~~s~~s~~~~~~~~i~~~~~--~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~ 513 (628)
+++..+.+.|..+++++..++..+. .|+++++|||++|+|+.++..+.+.+++.+.+.+.+++++||++++....+..
T Consensus 78 d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~ 157 (199)
T cd03283 78 DDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLD 157 (199)
T ss_pred hccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcC
Confidence 9998888889888888999999887 99999999999999998887776777787777789999999999988888888
Q ss_pred cceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCC
Q 006859 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGL 556 (628)
Q Consensus 514 ~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~ 556 (628)
++|.++||....+++.+.|+|++.+|.+. .++|+.+|+.+|+
T Consensus 158 ~~v~~~~~~~~~~~~~~~~~y~~~~G~~~-~s~~~~~a~~~g~ 199 (199)
T cd03283 158 SAVRNYHFREDIDDNKLIFDYKLKPGVSP-TRNALRLMKKIGI 199 (199)
T ss_pred CCeEEEEEEEEEECCeeeEEEEeCCCCCC-CcHHHHHHHHcCC
Confidence 99999999999999999999999999987 6899999999885
No 22
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.97 E-value=2.6e-31 Score=257.15 Aligned_cols=199 Identities=46% Similarity=0.814 Sum_probs=183.6
Q ss_pred EEcCccCccccc--ccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcC
Q 006859 356 IDGGRHPILESI--HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMG 433 (628)
Q Consensus 356 ~~~~~~~~l~~~--~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~ 433 (628)
+++++||+++.+ ..+++|||++++. |++++|+||||||||||||+|++..+++|.|+++|+....++++++++..++
T Consensus 2 ~~~~~~p~l~~~~~~~~~~~~~~~l~~-~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~ 80 (202)
T cd03243 2 IKGGRHPVLLALTKGETFVPNDINLGS-GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIG 80 (202)
T ss_pred cccccCCEEeccccCCceEeeeEEEcC-CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEec
Confidence 467899999863 6679999999994 7999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhC
Q 006859 434 TVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 434 ~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~ 513 (628)
..+.+..+.|+|+.+++++..++..+.+|+++++|||++|+++.++..+.+.+++.+.+.+.+++++||+.++....+..
T Consensus 81 ~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~ 160 (202)
T cd03243 81 AEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQV 160 (202)
T ss_pred CcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999998888877778888877899999999999999888888
Q ss_pred cceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCC
Q 006859 514 PNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGL 556 (628)
Q Consensus 514 ~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~ 556 (628)
+.+.+++|....+++++.|+|++.+|.+. .++|+.+|+..|+
T Consensus 161 ~~l~~~~~~~~~~~~~~~~~ykl~~g~~~-~~~a~~~~~~~g~ 202 (202)
T cd03243 161 PGVKNLHMEELITTGGLTFTYKLIDGICD-PSYALQIAELAGL 202 (202)
T ss_pred CCeEEEEEEEEecCCeeeEEEEEeECCCC-CcHHHHHHHHcCC
Confidence 88999999988888999999999999987 6999999998875
No 23
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.97 E-value=2.8e-31 Score=256.32 Aligned_cols=198 Identities=30% Similarity=0.449 Sum_probs=174.8
Q ss_pred EEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC-CCchHHHHHHhhcCC
Q 006859 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF-STIRVVDRIFTRMGT 434 (628)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~-~~i~~~~~~~~~~~~ 434 (628)
++.++||+++.....++|+++++....++++|+||||||||||||+|+...+++|+|+++|+.. ..+++++++++.++.
T Consensus 2 ~~~~~hp~~~~~~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~ 81 (200)
T cd03280 2 LREARHPLLPLQGEKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGD 81 (200)
T ss_pred CcccCCCEEeccCCceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCc
Confidence 5678999998766679999999986446899999999999999999998899999999999875 467778999999999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCc
Q 006859 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYP 514 (628)
Q Consensus 435 ~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~ 514 (628)
.+.+..+.|+||.||+++..++..+.+|+++++|||++|+|+..+..+...+++.+.+.+.+++++||+.++..++++..
T Consensus 82 ~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~ 161 (200)
T cd03280 82 EQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKRE 161 (200)
T ss_pred hhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCC
Confidence 99999999999999999999998889999999999999999988888777777878777999999999988888887777
Q ss_pred ceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCC
Q 006859 515 NVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGL 556 (628)
Q Consensus 515 ~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~ 556 (628)
.+..+++. .+.+.+.|+|++..|.+. .+||+.+|+.+|+
T Consensus 162 ~l~~g~l~--~~~~~~~~~ykl~~G~~~-~s~a~~~a~~~g~ 200 (200)
T cd03280 162 GVENASME--FDPETLKPTYRLLIGVPG-RSNALEIARRLGL 200 (200)
T ss_pred CeEEEEEE--EecCcccEEEEEeECCCC-CcHHHHHHHHcCC
Confidence 77666654 457789999999999987 6899999999885
No 24
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.93 E-value=2.7e-24 Score=208.81 Aligned_cols=202 Identities=34% Similarity=0.468 Sum_probs=155.8
Q ss_pred hhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHHHHHH
Q 006859 5 ATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQF 84 (628)
Q Consensus 5 ~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~l~~~ 84 (628)
++|+++|||+++..+ | +.+||||++||+|.|++|+|+||+|+++|++|+++|++||++|++|+++++++..++..
T Consensus 1 ~~Tl~~L~i~~~~~~---~--~~~~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~~~~ 75 (204)
T PF05192_consen 1 ANTLKSLEIFENSRS---G--KKKGSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREELRSI 75 (204)
T ss_dssp HHHHHHTTSSSBTTT---S--SSSTSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ChhHHhccCCCCCCC---C--CCCCcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhhhhh
Confidence 589999999988653 3 36889999999999999999999999999999999999999999999998888899999
Q ss_pred HhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhh-h-HHHHHHHHHHhhcch
Q 006859 85 LRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDA-Q-SFLLANIYRSVCENE 162 (628)
Q Consensus 85 L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~-~-s~lL~~i~~~~~~~~ 162 (628)
|++++ |+++++.++..+. ....++..++.++..+..+.+.+... . .+.+..+...+ +
T Consensus 76 l~~~~-di~~~l~~l~~~~-----------------~~~~~~~~l~~~l~~~~~i~~~~~~~~~~~~~L~~l~~~l---~ 134 (204)
T PF05192_consen 76 LKKIP-DIERILKRLRSGR-----------------ASPQDLLKLYKTLRSIIEIKKLLSERLESSPLLRKLLSSL---P 134 (204)
T ss_dssp HTTC--SHHHHHHHHHTTH-----------------HHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHH---C
T ss_pred hhccc-hHHHHHHHHHHhh-----------------cChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhc---c
Confidence 99998 8999999986542 12467888999999988888775432 1 25677664433 2
Q ss_pred hHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceeccc
Q 006859 163 KYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQ 242 (628)
Q Consensus 163 ~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 242 (628)
.+..+.+.|+.++|++... ..+.+ ..|++
T Consensus 135 ~~~~l~~~i~~~id~~~~~-----~~~~~--~~I~~-------------------------------------------- 163 (204)
T PF05192_consen 135 DFSELLDEIESTIDEDKSL-----AIREQ--DIIRD-------------------------------------------- 163 (204)
T ss_dssp SHHHHHHHHHHHBHTS-CC-----HCTTS--SSBST--------------------------------------------
T ss_pred cHHHHHHHHHHHHhcCcHH-----HHhcc--cHHHH--------------------------------------------
Confidence 4778888999999886320 00111 12222
Q ss_pred ceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006859 243 GFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEVLC 322 (628)
Q Consensus 243 g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 322 (628)
+...+..++.++...+.++.+.+..+.+.++
T Consensus 164 -------------------------------------------------~~~~~~~i~~~L~~~i~~~~~~l~~~~~~i~ 194 (204)
T PF05192_consen 164 -------------------------------------------------INDEEQRILRELTNEIRKYSPELRELSEAIA 194 (204)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006859 323 LLDMIVNSFAH 333 (628)
Q Consensus 323 ~lD~~~~s~a~ 333 (628)
+||++ +|||.
T Consensus 195 eLD~l-~s~A~ 204 (204)
T PF05192_consen 195 ELDVL-ISFAK 204 (204)
T ss_dssp HHHHH-HHHHH
T ss_pred HHHHH-HhcCC
Confidence 99999 99984
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.5e-25 Score=211.65 Aligned_cols=154 Identities=22% Similarity=0.349 Sum_probs=127.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HH----------HhcCC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------IL----------AQIGC 413 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~----------~~~g~ 413 (628)
.++++.|+..++|+++++++. +|++++|+||||||||||+|+|.|+. +. ..+|
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~--------~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~Ig- 78 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVE--------KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIG- 78 (254)
T ss_pred eeeEEEECCEeeeeccEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEE-
Confidence 458999996689999999999 99999999999999999999999954 11 2478
Q ss_pred cccCCCC---Cc---------------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 414 YVPAHFS---TI---------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 414 ~v~~~~~---~i---------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
|||+... .+ ..+++.+.+.|+.+..++.++.+|+|++|++.+++++ ++|
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC
Confidence 8987541 01 2456788999999999999999999999999999887 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCccee
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVK 517 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~ 517 (628)
++++||||+.|.|+..... ...++..+.+.|+||+++||| +......++.|.
T Consensus 159 ~lllLDEP~~gvD~~~~~~-i~~lL~~l~~eg~tIl~vtHD--L~~v~~~~D~vi 210 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKE-IYDLLKELRQEGKTVLMVTHD--LGLVMAYFDRVI 210 (254)
T ss_pred CEEEecCCcccCCHHHHHH-HHHHHHHHHHCCCEEEEEeCC--cHHhHhhCCEEE
Confidence 9999999999999865544 556777788779999999999 555566666553
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=5.5e-24 Score=196.80 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=128.5
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHH
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~ 409 (628)
.++.+.||.+.+|+++++++. +|++++|+||+|||||||||+|.++. +..
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~--------~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVE--------KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred EeeeEEeCCeEEecCcceeEc--------CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence 458999999999999999999 99999999999999999999999953 445
Q ss_pred hcCCcccCCCCCch-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFSTIR-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~~i~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
++| +|++....++ ..-+.+.++|+.+..+..++.+|||++|+..|++++ .+|+
T Consensus 78 ~vG-mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 78 KVG-MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred hcC-eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 678 7776654433 334678899999999999999999999999999887 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEE
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFY 522 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~ 522 (628)
++++|||++.+||.-... ...++..|++.|.|.+++||.+.++.-. .++|.+++-+
T Consensus 157 vmLFDEPTSALDPElv~E-VL~vm~~LA~eGmTMivVTHEM~FAr~V--adrviFmd~G 212 (240)
T COG1126 157 VMLFDEPTSALDPELVGE-VLDVMKDLAEEGMTMIIVTHEMGFAREV--ADRVIFMDQG 212 (240)
T ss_pred EEeecCCcccCCHHHHHH-HHHHHHHHHHcCCeEEEEechhHHHHHh--hheEEEeeCC
Confidence 999999977777643333 3346777888999999999997776432 3555455444
No 27
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=3.6e-25 Score=234.20 Aligned_cols=267 Identities=14% Similarity=0.146 Sum_probs=191.3
Q ss_pred CCEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------
Q 006859 352 GPLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------- 406 (628)
.++++.|.. +++++++|+++. +|+++||+|.+||||||+.++|.|+.
T Consensus 9 ~nL~v~~~~~~~~~~~v~~vsf~v~--------~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 9 ENLTVEFATDGGRVPAVRDVSFEVE--------PGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eceEEEEecCCcceeeeecceEEec--------CCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 446666643 368899998888 99999999999999999999999943
Q ss_pred --------HHHhcCCcccCCCCCc-----h----------------------HHHHHHhhcCCcccccc--CcCchHHHH
Q 006859 407 --------ILAQIGCYVPAHFSTI-----R----------------------VVDRIFTRMGTVDNLES--NSSTFMTEM 449 (628)
Q Consensus 407 --------~~~~~g~~v~~~~~~i-----~----------------------~~~~~~~~~~~~~~~~~--~~s~~s~~~ 449 (628)
....++ ++|++...- . ...+++...|+.+.... .+..|||||
T Consensus 81 ~~~~~r~~rg~~Ia-~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 81 SEREMRKLRGKRIA-MIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred CHHHHHHhccccEE-EEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 011233 444443110 0 22345677787766655 788899999
Q ss_pred HHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH-HHhhhCcc------------
Q 006859 450 KETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS-ELATIYPN------------ 515 (628)
Q Consensus 450 ~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~-~~~~~~~~------------ 515 (628)
+|++.|+.++ .+|+|+|+|||+.++|......+...+.+...+.|.+++++|||+++. +++++...
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 9988887665 889999999998888876666655544444446799999999997764 34433210
Q ss_pred -------------------------------------------eeEE--EEE--------------------EEEeC---
Q 006859 516 -------------------------------------------VKIL--HFY--------------------VVIRN--- 527 (628)
Q Consensus 516 -------------------------------------------v~~~--~~~--------------------~~~~~--- 527 (628)
|.+. ++. +.+..
T Consensus 240 ~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~ 319 (539)
T COG1123 240 EEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGET 319 (539)
T ss_pred HHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCE
Confidence 0000 000 00000
Q ss_pred --------------------------Cee---------------------------------------------------
Q 006859 528 --------------------------NRL--------------------------------------------------- 530 (628)
Q Consensus 528 --------------------------~~~--------------------------------------------------- 530 (628)
|.+
T Consensus 320 lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~ 399 (539)
T COG1123 320 LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG 399 (539)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc
Confidence 000
Q ss_pred -------------------------eEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhh
Q 006859 531 -------------------------DFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKR 578 (628)
Q Consensus 531 -------------------------~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~ 578 (628)
.|-++||+|++||+.+|+++|. ++|+|.+.+|..-+ +++.|.+-+...
T Consensus 400 ~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~ 479 (539)
T COG1123 400 GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL 479 (539)
T ss_pred cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh
Confidence 1456699999999999999998 89999999997665 555555444444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHH-HHHHHHHHhccC
Q 006859 579 MEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 579 ~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
..|.++++||+..+..+|||+++|+.|++++.+..+. +..++++||+.+
T Consensus 480 g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 480 GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred CCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 4489999999999999999999999999998877665 666899999864
No 28
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.91 E-value=7.3e-24 Score=206.34 Aligned_cols=186 Identities=18% Similarity=0.270 Sum_probs=142.0
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
.++++.|+++++++++++++. +|++++|+||||||||||||+|+|+. +-.+
T Consensus 6 ~~ls~~y~~~~il~~ls~~i~--------~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 6 ENLSFGYGGKPILDDLSFSIP--------KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred EEEEEEECCeeEEecceEEec--------CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhh
Confidence 359999999999999999999 99999999999999999999999954 2224
Q ss_pred cCCcccCCCCC----------------------------chHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFST----------------------------IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~----------------------------i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+| |||+.... ...++..+..+|+.+...+...++|+|++|++.+++++ .+
T Consensus 78 ia-~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 78 LA-YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred EE-EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcC
Confidence 55 77765311 01345568889999999999999999999999999887 78
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCC
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGP 540 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~ 540 (628)
+++++||||+..+|......+.. ++..+. +.|.|+++++||++++- ..++++ +.+.+|++. ..|.
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~-ll~~l~~~~~~tvv~vlHDlN~A~--ryad~~------i~lk~G~i~-----a~G~ 222 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLE-LLRDLNREKGLTVVMVLHDLNLAA--RYADHL------ILLKDGKIV-----AQGT 222 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHH--HhCCEE------EEEECCeEE-----eecC
Confidence 99999999977777655555443 445555 56999999999966543 334444 344556554 3466
Q ss_pred CCCCcHHHHHHHHCCCCHHH
Q 006859 541 RHVPHYGLLLAEVAGLPSTV 560 (628)
Q Consensus 541 ~~~~~~a~~la~~~g~p~~~ 560 (628)
+..+...-.++..+|++..+
T Consensus 223 p~evlT~e~l~~Vygv~~~~ 242 (258)
T COG1120 223 PEEVLTEENLREVYGVDADV 242 (258)
T ss_pred cchhcCHHHHHHHhCCceEE
Confidence 55566777788888887544
No 29
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=7.2e-26 Score=213.35 Aligned_cols=219 Identities=16% Similarity=0.197 Sum_probs=161.0
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~ 431 (628)
.++++.|+.+.+++++++++. .|++++++||+||||||+||+|.+ .+.+++|.+.+.++....
T Consensus 5 ~nvsk~y~~~~av~~v~l~I~--------~gef~vliGpSGsGKTTtLkMINr---------Liept~G~I~i~g~~i~~ 67 (309)
T COG1125 5 ENVSKRYGNKKAVDDVNLTIE--------EGEFLVLIGPSGSGKTTTLKMINR---------LIEPTSGEILIDGEDISD 67 (309)
T ss_pred eeeehhcCCceeeeeeeEEec--------CCeEEEEECCCCCcHHHHHHHHhc---------ccCCCCceEEECCeeccc
Confidence 458899999999999999999 999999999999999999999999 999999999887665544
Q ss_pred cCCccccccCcCchHHHH-HHHHHHHHhC-CCCcEEEEeCCCCCCC--hHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 432 MGTVDNLESNSSTFMTEM-KETAFVMQNV-SERSLIVMDELGRATS--SSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~-~~~~~i~~~~-~~~~l~llDE~~~gt~--~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
+. ..++ +++.+++|.. --|.+.+.++++--.. ..+...+...+.+.+.-. .++-.
T Consensus 68 ~d------------~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lv---------gL~p~ 126 (309)
T COG1125 68 LD------------PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV---------GLDPS 126 (309)
T ss_pred CC------------HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHh---------CCCHH
Confidence 33 1222 3577777665 2344444444421100 112222222233322111 12234
Q ss_pred HHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhh
Q 006859 508 ELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRME 580 (628)
Q Consensus 508 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~ 580 (628)
++.++|| ++||+|++||+..++++|. ++|+|-..+|...+ +-+.+.+-+++...
T Consensus 127 ~~~~RyP-------------------~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~k 187 (309)
T COG1125 127 EYADRYP-------------------HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGK 187 (309)
T ss_pred HHhhcCc-------------------hhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCC
Confidence 7889999 9999999999999999999 89999999998876 33344444444445
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHHHhccC
Q 006859 581 INCLQYKQIQMLYHAAQRLICLKYSNQDEES-IRHALQNLKESFIDGR 627 (628)
Q Consensus 581 ~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~-~~~~l~~~~~~~~~~~ 627 (628)
|++++|||+++|..++||+.+|+.|++...+ +.+.+.++.+.|++.+
T Consensus 188 TivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f 235 (309)
T COG1125 188 TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235 (309)
T ss_pred EEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHH
Confidence 9999999999999999999999999997654 4455788999998764
No 30
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1e-23 Score=201.13 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=126.1
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------H--------HHhcCCcc
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------I--------LAQIGCYV 415 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~--------~~~~g~~v 415 (628)
..+++.|+..++|+++++++. +|++++|+||+|||||||||+|+|+. + -..+| ||
T Consensus 7 ~~v~~~f~~~~vl~~i~L~v~--------~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~-~v 77 (248)
T COG1116 7 EGVSKSFGGVEVLEDINLSVE--------KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIG-YV 77 (248)
T ss_pred EeeEEEeCceEEeccceeEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEE-EE
Confidence 348889999999999999999 99999999999999999999999954 0 11233 44
Q ss_pred cCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCC
Q 006859 416 PAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDEL 470 (628)
Q Consensus 416 ~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~ 470 (628)
+++...++ .....+..+|+.+..++.+..+||||+|++.+++++ ..|++++||||
T Consensus 78 FQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 78 FQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred eccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44332222 456778889999999999999999999999999887 88999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 471 ~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+..+|......+...+++.+.+.+.|++++||| +.+.....++|
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHd--i~EAv~LsdRi 201 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHD--VDEAVYLADRV 201 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC--HHHHHhhhCEE
Confidence 999999888887778888888889999999999 55544444544
No 31
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=5.9e-23 Score=208.84 Aligned_cols=157 Identities=20% Similarity=0.337 Sum_probs=125.8
Q ss_pred CCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHh
Q 006859 352 GPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQ 410 (628)
Q Consensus 352 ~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~ 410 (628)
.+++.+|+ ..++|+++++++. +|+++|++||||||||||+|+|+|+. +..+
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~--------~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ 79 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVE--------PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRR 79 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEc--------CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhh
Confidence 45999999 6999999999999 99999999999999999999999955 4557
Q ss_pred cCCcccCCCCCc------------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 411 IGCYVPAHFSTI------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 411 ~g~~v~~~~~~i------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
+| |+|...... ..++.++..+|+.+...+..+.||+||+|+..++.++ .+|+++
T Consensus 80 ig-y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 80 IG-YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred eE-EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 78 777655311 1345677888888766677899999999887777665 889999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhCC-cEEEEEcCChhHHHHhhhCcceeEEE
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLSLK-AYTIFASHMENLSELATIYPNVKILH 520 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~~~-~~vi~~tH~~~l~~~~~~~~~v~~~~ 520 (628)
+||||++|+|+..... .+.++..+.+.+ .+|+++||. +.++...+++|.+.+
T Consensus 159 iLDEPt~GLDp~~~~~-~~~~l~~l~~~g~~tvlissH~--l~e~~~~~d~v~il~ 211 (293)
T COG1131 159 ILDEPTSGLDPESRRE-IWELLRELAKEGGVTILLSTHI--LEEAEELCDRVIILN 211 (293)
T ss_pred EECCCCcCCCHHHHHH-HHHHHHHHHhCCCcEEEEeCCc--HHHHHHhCCEEEEEe
Confidence 9999999999966555 455666677666 899999999 666666677663333
No 32
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=196.33 Aligned_cols=154 Identities=17% Similarity=0.238 Sum_probs=126.3
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------HHHhcCCcc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------ILAQIGCYV 415 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------~~~~~g~~v 415 (628)
.++.+||...+++++++.+. +|+++|++|||||||||.+|+|.|+. +...|| |+
T Consensus 7 ~vtK~Fg~k~av~~isf~v~--------~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yL 77 (300)
T COG4152 7 GVTKSFGDKKAVDNISFEVP--------PGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YL 77 (300)
T ss_pred cchhccCceeeecceeeeec--------CCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cC
Confidence 48899999999999999999 99999999999999999999999965 456788 88
Q ss_pred cCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHH-HHHHHHhCCCCcEEEEeCC
Q 006859 416 PAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKE-TAFVMQNVSERSLIVMDEL 470 (628)
Q Consensus 416 ~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~-~~~i~~~~~~~~l~llDE~ 470 (628)
|.+.|..+ ..+.++.++++.....+.+.++|.|++| +..+...++.|+|+|||||
T Consensus 78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 87776543 2356788888888888899999999886 4555566699999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeE
Q 006859 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKI 518 (628)
Q Consensus 471 ~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~ 518 (628)
++|+||.....+..++ ..+.+.|+|++++||. +.+....|+++..
T Consensus 158 FSGLDPVN~elLk~~I-~~lk~~GatIifSsH~--Me~vEeLCD~llm 202 (300)
T COG4152 158 FSGLDPVNVELLKDAI-FELKEEGATIIFSSHR--MEHVEELCDRLLM 202 (300)
T ss_pred ccCCChhhHHHHHHHH-HHHHhcCCEEEEecch--HHHHHHHhhhhhe
Confidence 9999998877655544 4477889999999999 5555556666533
No 33
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.8e-26 Score=211.71 Aligned_cols=227 Identities=17% Similarity=0.145 Sum_probs=154.0
Q ss_pred CCEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHh
Q 006859 352 GPLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFT 430 (628)
Q Consensus 352 ~~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~ 430 (628)
.+++..| +++++|+++++++. +||+++|+||+|||||||||+|+| .+++.+|++.+.+.-..
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~--------~GE~VaiIG~SGaGKSTLLR~lng---------l~d~t~G~i~~~g~~i~ 69 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEIN--------QGEMVAIIGPSGAGKSTLLRSLNG---------LVDPTSGEILFNGVQIT 69 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeC--------CCcEEEEECCCCCcHHHHHHHHhc---------ccCCCcceEEecccchh
Confidence 4588899 89999999999999 999999999999999999999999 89999998766544333
Q ss_pred hcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHH
Q 006859 431 RMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSE 508 (628)
Q Consensus 431 ~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~ 508 (628)
.+.- ..+-.-.++++.|++.. -.+++-++.....|.-.. ......+...+. +.....+-+.+..++.+
T Consensus 70 ~~~~--------k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~--~s~~~slfglfsk~dk~~Al~aLervgi~~ 139 (258)
T COG3638 70 KLKG--------KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY--TSTWRSLFGLFSKEDKAQALDALERVGILD 139 (258)
T ss_pred ccch--------HHHHHHHHhceeEeccCCcccccHHHHHHHhhhccc--chHHHHHhCCCCHHHHHHHHHHHHHcCcHH
Confidence 2210 01112223455555544 223333333332221110 111111221111 11112222333445555
Q ss_pred HhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhh
Q 006859 509 LATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEI 581 (628)
Q Consensus 509 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~ 581 (628)
.+-... .+||+|++||+++|+++++ ++|+|.+.+|+... +++.|++.......|
T Consensus 140 ~A~qra-------------------~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~T 200 (258)
T COG3638 140 KAYQRA-------------------STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGIT 200 (258)
T ss_pred HHHHHh-------------------ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCE
Confidence 554433 7899999999999999999 89999999998655 666666554444459
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHH--HHHHHh
Q 006859 582 NCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQN--LKESFI 624 (628)
Q Consensus 582 ~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~l~~--~~~~~~ 624 (628)
+++..|+++.+.+||||++-|++|++..+++..++.. +.+.|-
T Consensus 201 vi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~~~~iYg 245 (258)
T COG3638 201 VIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEIYG 245 (258)
T ss_pred EEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHHHHHHHhc
Confidence 9999999999999999999999999999988877554 555553
No 34
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1.3e-22 Score=190.63 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=121.8
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------ 406 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------ 406 (628)
-+.++++||.+.+++++++++. +|++++|+||+|+|||||||+|.|+.
T Consensus 11 vr~v~~~fG~~~Ild~v~l~V~--------~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 11 VRGVTKSFGDRVILDGVDLDVP--------RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred EeeeeeecCCEEEecCceeeec--------CCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 3459999999999999999999 99999999999999999999999943
Q ss_pred HHHhcCCcccCCCCCch-------------------------HHHHHHhhcCCccc-cccCcCchHHHHHHHHHHHHhC-
Q 006859 407 ILAQIGCYVPAHFSTIR-------------------------VVDRIFTRMGTVDN-LESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 407 ~~~~~g~~v~~~~~~i~-------------------------~~~~~~~~~~~~~~-~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
+..++| ++++..+.+. .+..-+...|+... .+..+|.+|+||++++.+++++
T Consensus 83 ir~r~G-vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 83 IRKRMG-VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred HHhhee-EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh
Confidence 444566 4444443221 11222455677776 7888999999999998888876
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcceeE
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKI 518 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~ 518 (628)
.+|+++++|||++|+||..... ...++..+. ..+.|++++||| +......++++..
T Consensus 162 ldPell~~DEPtsGLDPI~a~~-~~~LI~~L~~~lg~T~i~VTHD--l~s~~~i~Drv~~ 218 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGV-IDELIRELNDALGLTVIMVTHD--LDSLLTIADRVAV 218 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHH-HHHHHHHHHHhhCCEEEEEECC--hHHHHhhhceEEE
Confidence 8999999999999999976555 344555555 469999999999 6677777777633
No 35
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.88 E-value=9.2e-23 Score=185.91 Aligned_cols=158 Identities=18% Similarity=0.263 Sum_probs=120.5
Q ss_pred CEEEEcCccC-cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhc
Q 006859 353 PLAIDGGRHP-ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQI 411 (628)
Q Consensus 353 ~l~~~~~~~~-~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~ 411 (628)
.++.+|+... +++++++.+. .|++++|.|||||||||+||+|+++. +..++
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae--------~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~I 77 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAE--------EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77 (245)
T ss_pred ehhhhccCHHhhhhheeEEec--------cceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhc
Confidence 3667777755 7888888888 99999999999999999999999954 44556
Q ss_pred CCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 412 GCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 412 g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
| .++...+-.. ....+..++++.+.+++....||.||+|...|++++ .+|++++
T Consensus 78 G-Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 78 G-VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred c-eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 6 4442222111 123345677888899999999999999999999887 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEE
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFY 522 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~ 522 (628)
+|||++|+|...... ....+..+.+.|.+++|+||. +.++...|++|...|-+
T Consensus 157 lDEP~sGLDi~~~r~-~~dfi~q~k~egr~viFSSH~--m~EvealCDrvivlh~G 209 (245)
T COG4555 157 LDEPTSGLDIRTRRK-FHDFIKQLKNEGRAVIFSSHI--MQEVEALCDRVIVLHKG 209 (245)
T ss_pred EcCCCCCccHHHHHH-HHHHHHHhhcCCcEEEEeccc--HHHHHHhhheEEEEecC
Confidence 999999988755444 334555666779999999999 66777778877544433
No 36
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-24 Score=203.52 Aligned_cols=216 Identities=14% Similarity=0.130 Sum_probs=148.6
Q ss_pred CCEEEEcCccC----cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHH
Q 006859 352 GPLAIDGGRHP----ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDR 427 (628)
Q Consensus 352 ~~l~~~~~~~~----~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~ 427 (628)
.++++.|+++. +++++++++. +|++++|+|++|||||||.|+|+| +.++..|.+.+.+.
T Consensus 7 ~nl~~~y~~~~~~~~~l~~VS~~i~--------~Ge~lgivGeSGsGKSTL~r~l~G---------l~~p~~G~I~~~G~ 69 (252)
T COG1124 7 RNLSIVYGGGKFAFHALNNVSLEIE--------RGETLGIVGESGSGKSTLARLLAG---------LEKPSSGSILLDGK 69 (252)
T ss_pred eceEEEecCCcchhhhhcceeEEec--------CCCEEEEEcCCCCCHHHHHHHHhc---------ccCCCCceEEECCc
Confidence 45889998887 9999999999 999999999999999999999999 99999999987765
Q ss_pred HHhhcCCccccccCcCchHHHHHHHHHHHHhC---CCCcEE---EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEc
Q 006859 428 IFTRMGTVDNLESNSSTFMTEMKETAFVMQNV---SERSLI---VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFAS 501 (628)
Q Consensus 428 ~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~---~~~~l~---llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~t 501 (628)
-+...+-.. ...+.+..++|.. -+|... ++.||..-....+.... +.+.+.
T Consensus 70 ~~~~~~~~~----------~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~---i~~~L~---------- 126 (252)
T COG1124 70 PLAPKKRAK----------AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR---IAELLD---------- 126 (252)
T ss_pred ccCccccch----------hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHH---HHHHHH----------
Confidence 443322110 0001111122211 001100 12233211000011111 222111
Q ss_pred CChhH-HHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHH
Q 006859 502 HMENL-SELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITK 573 (628)
Q Consensus 502 H~~~l-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~ 573 (628)
..++ ..+.+++| ++||+|+.||+++|++++- ++|+|++.+|..-+ +++-|.+
T Consensus 127 -~VgL~~~~l~R~P-------------------~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~ 186 (252)
T COG1124 127 -QVGLPPSFLDRRP-------------------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE 186 (252)
T ss_pred -HcCCCHHHHhcCc-------------------hhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHH
Confidence 2223 25667788 9999999999988888877 89999999998877 6666655
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHH-HHHHHHHhccC
Q 006859 574 KEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHAL-QNLKESFIDGR 627 (628)
Q Consensus 574 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~l-~~~~~~~~~~~ 627 (628)
..+.+..|.++++||+..+..+|||+++|++|++++....+.+ ..++++||+++
T Consensus 187 l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~L 241 (252)
T COG1124 187 LKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTREL 241 (252)
T ss_pred HHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHH
Confidence 5555556999999999999999999999999999888776664 34688998764
No 37
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=2.4e-22 Score=191.85 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=118.1
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------- 406 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------- 406 (628)
++...|+. .++|+++++++. +|++++|+||+||||||||++|+|+.
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i~--------~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEIE--------AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred eeEEEeccCCcceEecccceEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHH
Confidence 35565543 368888899998 99999999999999999999999953
Q ss_pred ---HHHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccc-cCcCchHHHHHHHHHHHHh
Q 006859 407 ---ILAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLE-SNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 407 ---~~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~-~~~s~~s~~~~~~~~i~~~ 458 (628)
...++| ||++...-++ ....++..+|+.+... +.++.+|+|++|+..|+++
T Consensus 78 ~~~R~~~iG-fvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 78 AKLRRKKIG-FVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHHHHHhEE-EECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 244678 7776654332 2334566678887777 7799999999999999988
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhC
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~ 513 (628)
+ .+|++++.|||+..+|...+..+.. ++..+. +.|.|+++||||.+++..+++.
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~-ll~~~~~~~g~tii~VTHd~~lA~~~dr~ 212 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLE-LLRELNKERGKTIIMVTHDPELAKYADRV 212 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHH-HHHHHHHhcCCEEEEEcCCHHHHHhCCEE
Confidence 7 8899999999988888876666444 444444 5699999999999888877655
No 38
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.88 E-value=5.5e-25 Score=223.66 Aligned_cols=216 Identities=13% Similarity=0.138 Sum_probs=171.1
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~ 431 (628)
.++++.||..++++++++++. +|+++.++|||||||||+||+||| |..|++|.|.+.++.++.
T Consensus 9 ~~v~k~yg~~~av~~isl~i~--------~Gef~~lLGPSGcGKTTlLR~IAG---------fe~p~~G~I~l~G~~i~~ 71 (352)
T COG3842 9 RNVSKSFGDFTAVDDISLDIK--------KGEFVTLLGPSGCGKTTLLRMIAG---------FEQPSSGEILLDGEDITD 71 (352)
T ss_pred EeeeeecCCeeEEecceeeec--------CCcEEEEECCCCCCHHHHHHHHhC---------CCCCCCceEEECCEECCC
Confidence 458999999999999999999 999999999999999999999999 999999999887666654
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChH---HHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 432 MGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSS---DGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~---~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
+ ..+.+.+..++|.. --|.+-+.|+++.|+... ....+...+.+.+. ...+.
T Consensus 72 l-------------pp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~-----------lV~L~ 127 (352)
T COG3842 72 V-------------PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALE-----------LVGLE 127 (352)
T ss_pred C-------------ChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHH-----------HcCch
Confidence 3 34456677777765 458888888888777611 11223333444332 24467
Q ss_pred HHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhh
Q 006859 508 ELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRME 580 (628)
Q Consensus 508 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~ 580 (628)
++++++| .+||+|++||+.+|+++|. ++|+|-+.+|..-+ +..++++.+.....
T Consensus 128 ~~~~R~p-------------------~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~gi 188 (352)
T COG3842 128 GFADRKP-------------------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI 188 (352)
T ss_pred hhhhhCh-------------------hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCC
Confidence 7888899 9999999999999999988 89999999998766 44455554444455
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHH-HHHHHHHHhccC
Q 006859 581 INCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 581 ~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
|.+++|||.++++.++|||++|++|++...+++++ ...+.+.|+-++
T Consensus 189 T~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~F 236 (352)
T COG3842 189 TFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADF 236 (352)
T ss_pred eEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHH
Confidence 88999999999999999999999999998877765 455777776544
No 39
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6e-25 Score=199.19 Aligned_cols=211 Identities=18% Similarity=0.222 Sum_probs=151.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~ 431 (628)
.+++..|+.++++++++..++ +|.+++|+|||||||||||.+++. .++.++|.+.+.+..++.
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~--------~g~iTs~IGPNGAGKSTLLS~~sR---------L~~~d~G~i~i~g~~~~~ 67 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIP--------KGGITSIIGPNGAGKSTLLSMMSR---------LLKKDSGEITIDGLELTS 67 (252)
T ss_pred hhhhHhhCCEEeeccceeeec--------CCceeEEECCCCccHHHHHHHHHH---------hccccCceEEEeeeeccc
Confidence 347889999999999999999 999999999999999999999999 999999999887666554
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhC--CCCcEEEEeCCCCCCChHHHHHH---HHHHHHHHHhCCcEEEEEcCChhH
Q 006859 432 MGTVDNLESNSSTFMTEMKETAFVMQNV--SERSLIVMDELGRATSSSDGFAI---AWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~~~~~~i~~~~--~~~~l~llDE~~~gt~~~~~~~~---~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
.. +.+..+...|++.. ....+.+-|=.+.|--|+..-.+ -+..++. +..+++|
T Consensus 68 ~~------------s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~----------aieyl~L 125 (252)
T COG4604 68 TP------------SKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE----------AIEYLHL 125 (252)
T ss_pred CC------------hHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHH----------HHHHhcc
Confidence 43 33333333333332 12233333333333322211110 1111111 1124557
Q ss_pred HHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-----HHHHHHHhhh
Q 006859 507 SELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-----ITSRITKKEV 576 (628)
Q Consensus 507 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-----~~~~l~~~~~ 576 (628)
.++.+++- -+||+|++|+..+|+.+|+ ++|+|-+.+|.... +++++.++.+
T Consensus 126 ~~l~dryL-------------------d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~ 186 (252)
T COG4604 126 EDLSDRYL-------------------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELG 186 (252)
T ss_pred cchHHHhH-------------------HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhC
Confidence 77777776 8899999999999999999 89999999998776 4455555555
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHH---HHHHH
Q 006859 577 KRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQN---LKESF 623 (628)
Q Consensus 577 ~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~l~~---~~~~~ 623 (628)
+ |++++.||++++..|+|.|+.|++|++..+|.++++-+ |++.|
T Consensus 187 K---tiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiy 233 (252)
T COG4604 187 K---TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233 (252)
T ss_pred C---eEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHh
Confidence 5 99999999999999999999999999988777765432 55555
No 40
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=7.2e-22 Score=202.89 Aligned_cols=163 Identities=15% Similarity=0.227 Sum_probs=124.8
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhc
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQI 411 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~ 411 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+. +..++
T Consensus 11 ~~l~k~~~~~~~l~~vsl~i~--------~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 11 RNVEKRYGDKLVVDGLSFHVQ--------RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred EeEEEEECCeEEEecceEEEe--------CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 458999998899999999999 99999999999999999999999954 23457
Q ss_pred CCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 412 GCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 412 g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
| |+|++....+ ....++..+++.+...+..+.+|+||+|+..+++++ .+|++++
T Consensus 83 g-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 83 G-VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred E-EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 7 7776543211 112345567777777888899999999888877766 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
||||+.|+|+..... .+.++..+.+.|.|++++||+ +.++...++++ +.+++|++.+
T Consensus 162 LDEPt~gLD~~~~~~-l~~~l~~l~~~g~till~sH~--l~e~~~~~d~i------~il~~G~i~~ 218 (306)
T PRK13537 162 LDEPTTGLDPQARHL-MWERLRSLLARGKTILLTTHF--MEEAERLCDRL------CVIEEGRKIA 218 (306)
T ss_pred EeCCCcCCCHHHHHH-HHHHHHHHHhCCCEEEEECCC--HHHHHHhCCEE------EEEECCEEEE
Confidence 999999999976665 444566666678999999999 44555556655 3344555543
No 41
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.9e-24 Score=207.22 Aligned_cols=216 Identities=16% Similarity=0.198 Sum_probs=157.3
Q ss_pred EEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHH
Q 006859 354 LAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRI 428 (628)
Q Consensus 354 l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~ 428 (628)
+++.|.. .++++++++++. +|+++||+|.+|||||||+|+|.+ .-.|++|.+.+.+..
T Consensus 7 vsK~~~~~~~~~~~al~~vsL~I~--------~GeI~GIIG~SGAGKSTLiR~iN~---------Le~PtsG~v~v~G~d 69 (339)
T COG1135 7 VSKTFGQTGTGTVTALDDVSLEIP--------KGEIFGIIGYSGAGKSTLLRLINL---------LERPTSGSVFVDGQD 69 (339)
T ss_pred eeeeeccCCCCceeeeccceEEEc--------CCcEEEEEcCCCCcHHHHHHHHhc---------cCCCCCceEEEcCEe
Confidence 5555543 578999999999 999999999999999999999999 888999999887765
Q ss_pred HhhcCCccccccCcCchHHHHHHHHHHHHhCCC-CcEEEEeCCC-----CCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 429 FTRMGTVDNLESNSSTFMTEMKETAFVMQNVSE-RSLIVMDELG-----RATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 429 ~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~-~~l~llDE~~-----~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
++.++-. .+-.-.+++..|+|...- .+-.+.|.+. +|.+ ...+...+.+.+ +
T Consensus 70 i~~l~~~--------~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~---k~ei~~RV~elL-----------e 127 (339)
T COG1135 70 LTALSEA--------ELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVP---KAEIKQRVAELL-----------E 127 (339)
T ss_pred cccCChH--------HHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCC---HHHHHHHHHHHH-----------H
Confidence 5544311 123334457777776521 1122223321 1221 222222233322 1
Q ss_pred ChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhh
Q 006859 503 MENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKE 575 (628)
Q Consensus 503 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~ 575 (628)
..+|.+..+.|| .+||+|+.|++.+|+++|. ++|+|++.+|++.. +++.|+.-.
T Consensus 128 lVgL~dk~~~yP-------------------~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In 188 (339)
T COG1135 128 LVGLSDKADRYP-------------------AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDIN 188 (339)
T ss_pred HcCChhhhccCc-------------------hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHH
Confidence 244667777788 9999999999999999999 89999999999866 777666655
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHHHhccC
Q 006859 576 VKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEES-IRHALQNLKESFIDGR 627 (628)
Q Consensus 576 ~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~-~~~~l~~~~~~~~~~~ 627 (628)
.....|++++||.|+.+..+|||+.+|+.|++++.| ..+.+.++++..|+++
T Consensus 189 ~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~f 241 (339)
T COG1135 189 RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEF 241 (339)
T ss_pred HHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHH
Confidence 555569999999999999999999999999997764 4556777888887764
No 42
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=2.5e-22 Score=200.48 Aligned_cols=96 Identities=10% Similarity=0.162 Sum_probs=80.3
Q ss_pred EeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 006859 532 FKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKY 604 (628)
Q Consensus 532 ~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~ 604 (628)
|-+.+|+|+.|+.++|++++- ++|+|++.+|+.-+ +++-|+.-+++...+.++++||+..+..+|++++||++
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 677899999998878777766 88999999998876 55555554444444889999999999999999999999
Q ss_pred cCCCHHHHHHH-HHHHHHHHhccC
Q 006859 605 SNQDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 605 g~~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
|+++++|..+. +.++++.||+.+
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~~L 526 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTRAL 526 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHHHH
Confidence 99999877665 888999999864
No 43
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=1.4e-21 Score=202.72 Aligned_cols=165 Identities=17% Similarity=0.250 Sum_probs=124.8
Q ss_pred CCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHH
Q 006859 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILA 409 (628)
Q Consensus 350 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~ 409 (628)
+..++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. ...
T Consensus 43 ~i~nl~k~y~~~~~l~~is~~i~--------~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~ 114 (340)
T PRK13536 43 DLAGVSKSYGDKAVVNGLSFTVA--------SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114 (340)
T ss_pred EEEEEEEEECCEEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhc
Confidence 34569999999999999999999 99999999999999999999999953 233
Q ss_pred hcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 410 QIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
.+| |+|+..... . ....++..+++.+...+..+.+|+||+|+..+++++ .+|++
T Consensus 115 ~ig-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l 193 (340)
T PRK13536 115 RIG-VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL 193 (340)
T ss_pred cEE-EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 466 666543211 1 112345667777777888899999999988887765 88999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++||||+.|+|+.....+ +.++..+.+.|.+++++||+ +.++...++++ +.+++|++.+
T Consensus 194 LiLDEPt~gLD~~~r~~l-~~~l~~l~~~g~tilisSH~--l~e~~~~~d~i------~il~~G~i~~ 252 (340)
T PRK13536 194 LILDEPTTGLDPHARHLI-WERLRSLLARGKTILLTTHF--MEEAERLCDRL------CVLEAGRKIA 252 (340)
T ss_pred EEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEECCC--HHHHHHhCCEE------EEEECCEEEE
Confidence 999999999999766654 44555556668999999999 55555556666 3445555554
No 44
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.2e-24 Score=218.11 Aligned_cols=216 Identities=18% Similarity=0.182 Sum_probs=162.0
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~ 431 (628)
.++.+.||...+++++++++. +|++++|+||||||||||||+||| +.++++|.+.+.++..+.
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~--------~Gef~vllGPSGcGKSTlLr~IAG---------Le~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIE--------DGEFVVLLGPSGCGKSTLLRMIAG---------LEEPTSGEILIDGRDVTD 69 (338)
T ss_pred eeeEEEcCCceeeecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhC---------CCCCCCceEEECCEECCC
Confidence 358899998779999999999 999999999999999999999999 999999999887666555
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChH--HHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 432 MGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSS--DGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~--~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
+. ...+.++.++|.. -=|.+-+.|+++.|+... ....+.+.+.+.. -.+++.+
T Consensus 70 l~-------------P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva-----------~~L~l~~ 125 (338)
T COG3839 70 LP-------------PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA-----------KLLGLEH 125 (338)
T ss_pred CC-------------hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHH-----------HHcCChh
Confidence 43 2334455555543 235556666665444321 1122333333321 1245677
Q ss_pred HhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhh
Q 006859 509 LATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEI 581 (628)
Q Consensus 509 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~ 581 (628)
+.++.| .+||+|++||+++|+++.+ ++|+|.+.+|...+ +...+++-+.....|
T Consensus 126 lL~r~P-------------------~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T 186 (338)
T COG3839 126 LLNRKP-------------------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTT 186 (338)
T ss_pred HHhcCc-------------------ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCc
Confidence 888888 9999999999999999998 89999999998776 444555544444458
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHH-HHHHHHHHhccC
Q 006859 582 NCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 582 ~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
++++|||..+++.++||+++|++|++...+.+.. ..++.+.|+-.+
T Consensus 187 ~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~F 233 (338)
T COG3839 187 TIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGF 233 (338)
T ss_pred EEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhh
Confidence 9999999999999999999999999988766665 456877776554
No 45
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=4.6e-22 Score=188.18 Aligned_cols=152 Identities=12% Similarity=0.157 Sum_probs=122.6
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch-------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR------- 423 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~------- 423 (628)
...++++||+-.+++++++++. +|++++|+|||||||||++++|+| +++|++|.+.
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~--------~Gei~~LIGPNGAGKTTlfNlitG---------~~~P~~G~v~~~G~~it 69 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVR--------PGEIVGLIGPNGAGKTTLFNLITG---------FYKPSSGTVIFRGRDIT 69 (250)
T ss_pred eccceeecCCEEEEeceeEEEc--------CCeEEEEECCCCCCceeeeeeecc---------cccCCCceEEECCcccC
Confidence 3459999999999999999999 999999999999999999999999 4444443321
Q ss_pred -----------------------------------------------------------HHHHHHhhcCCccccccCcCc
Q 006859 424 -----------------------------------------------------------VVDRIFTRMGTVDNLESNSST 444 (628)
Q Consensus 424 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~s~ 444 (628)
....++..+|+.+..+...+.
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 223456678888888899999
Q ss_pred hHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEE
Q 006859 445 FMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFY 522 (628)
Q Consensus 445 ~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~ 522 (628)
++.|.+++..|++++ ++|.+++||||.+|.++.+...+.. ++..+.+ .+.+++++-|+ +.-....+++|..++++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHd--M~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHD--MKLVMGLADRIVVLNYG 226 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEec--cHHHhhhccEEEeccCC
Confidence 999999888888776 8999999999999999988877555 4555655 57999999999 55555666777555555
No 46
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.86 E-value=3.4e-21 Score=174.27 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=120.2
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------H
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------I 407 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~ 407 (628)
++++.|+ ++++|.++++++. +|+++-|+||+|||||||||+|.+.. +
T Consensus 6 ~V~k~Y~~g~~aL~~vs~~i~--------~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 6 NVSKAYPGGREALRDVSFHIP--------KGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred hhhhhcCCCchhhhCceEeec--------CceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchh
Confidence 3566664 4679999999999 99999999999999999999999954 5
Q ss_pred HHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 408 LAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
..+|| .|.++.-.+. .+...+...|+.+....-++.+|+|++|+..|+++. ..|
T Consensus 78 RR~IG-vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 78 RRQIG-VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred hheee-eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence 56788 6666542221 344567888999999999999999999999999887 789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
.+++.|||+..+||.-...+. .+++.+...|.||+++||+.++.+-..
T Consensus 157 ~vLlADEPTGNLDp~~s~~im-~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIM-RLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred CeEeecCCCCCCChHHHHHHH-HHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 999999998888886555433 356667778999999999987766544
No 47
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.2e-24 Score=207.15 Aligned_cols=215 Identities=19% Similarity=0.217 Sum_probs=157.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~ 432 (628)
+++..+++.++++++++.+. +|+.++++|||||||||+||+|+| ...|+.|.|.+.++.+...
T Consensus 7 ~~~~~~~~~~a~~di~l~i~--------~Ge~vaLlGpSGaGKsTlLRiIAG---------Le~p~~G~I~~~~~~l~D~ 69 (345)
T COG1118 7 NVKKRFGAFGALDDISLDIK--------SGELVALLGPSGAGKSTLLRIIAG---------LETPDAGRIRLNGRVLFDV 69 (345)
T ss_pred hhhhhcccccccccceeeec--------CCcEEEEECCCCCcHHHHHHHHhC---------cCCCCCceEEECCEeccch
Confidence 36677888899999999998 999999999999999999999999 9999999988766633221
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChH----HHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 433 GTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSS----DGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 433 ~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~----~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.- .....+++..++|.. --+.+.+.|++..|.... +...+...+.+.|. ..+|.
T Consensus 70 ~~----------~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~-----------lvqL~ 128 (345)
T COG1118 70 SN----------LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLR-----------LVQLE 128 (345)
T ss_pred hc----------cchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHH-----------Hhccc
Confidence 10 233345566666554 346777888888776221 11222222333221 23467
Q ss_pred HHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhh
Q 006859 508 ELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRME 580 (628)
Q Consensus 508 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~ 580 (628)
.++++|| .+||+|++|++..|+++|. ++|+|...+|.+-+ +-..|.+-......
T Consensus 129 ~la~ryP-------------------~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ 189 (345)
T COG1118 129 GLADRYP-------------------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189 (345)
T ss_pred chhhcCc-------------------hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCc
Confidence 7889999 9999999999999999988 89999999998765 44444443333344
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHH-HHHHHHHHh
Q 006859 581 INCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA-LQNLKESFI 624 (628)
Q Consensus 581 ~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~-l~~~~~~~~ 624 (628)
+++++|||.++++.+||||++|++|+++..+++.+ ...+...|+
T Consensus 190 ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV 234 (345)
T COG1118 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFV 234 (345)
T ss_pred eEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccce
Confidence 88999999999999999999999999988777665 333554443
No 48
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=5.8e-21 Score=186.67 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=112.4
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+. ...++|
T Consensus 5 ~l~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~- 75 (213)
T cd03259 5 GLSKTYGSVRALDDLSLTVE--------PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG- 75 (213)
T ss_pred eeEEEeCCeeeecceeEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE-
Confidence 47888888889999999999 99999999999999999999999953 012344
Q ss_pred cccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
|+|+....+ . ....++..+++.+...+..+.+|+|++|+..+++++ .+|+++++|
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 555542111 0 122345667777777788889999999988888766 789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||++|+|+.....+. .++..+.+ .+.+++++||+.+ .+...++++
T Consensus 156 EPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~--~~~~~~d~v 201 (213)
T cd03259 156 EPLSALDAKLREELR-EELKELQRELGITTIYVTHDQE--EALALADRI 201 (213)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEecCHH--HHHHhcCEE
Confidence 999999986655543 34444444 5899999999954 333334444
No 49
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.2e-23 Score=190.40 Aligned_cols=198 Identities=15% Similarity=0.193 Sum_probs=134.5
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~ 431 (628)
.++++.-.++.+++++++++. +|++.+|+||||||||||||.++| .+.+++|.+.+++..+..
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~--------pGev~ailGPNGAGKSTlLk~LsG---------el~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLR--------PGEVLAILGPNGAGKSTLLKALSG---------ELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred eeeEEEeecceeccCcceecc--------CCcEEEEECCCCccHHHHHHHhhC---------ccCCCCCeEeeCCcChhh
Confidence 358888889999999999999 999999999999999999999999 999999988776655554
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhC------CCCcEEEEeC-CC-CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 432 MGTVDNLESNSSTFMTEMKETAFVMQNV------SERSLIVMDE-LG-RATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~~~~~~i~~~~------~~~~l~llDE-~~-~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
+...+. .+.++.+-+.. +..+++-|-- |. .|-.+.+-..+....+. .
T Consensus 68 ~~~~~l-----------A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala---~----------- 122 (259)
T COG4559 68 WPPEEL-----------ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALA---A----------- 122 (259)
T ss_pred CCHHHH-----------HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHH---H-----------
Confidence 432110 01111111111 0011111111 11 11222222222332222 1
Q ss_pred hhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----------HCCCCHHHHHHHHH-----H
Q 006859 504 ENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----------VAGLPSTVIETARS-----I 567 (628)
Q Consensus 504 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----------~~g~p~~~l~~a~~-----~ 567 (628)
.++..++.+.. ..||+|++|++.+|+.+|+ ++|+|++.+|.+.+ +
T Consensus 123 ~d~~~la~R~y-------------------~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~l 183 (259)
T COG4559 123 TDLSGLAGRDY-------------------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183 (259)
T ss_pred cChhhhhccch-------------------hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHH
Confidence 12344454443 6799999999999999999 67999999999988 3
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHH
Q 006859 568 TSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRH 614 (628)
Q Consensus 568 ~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~ 614 (628)
.+.+.+.. ..++.+.||++.+.+|||||++|.+|++...+.++
T Consensus 184 aR~la~~g----~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 184 ARQLAREG----GAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHhcC----CcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 34444432 37899999999999999999999999987655444
No 50
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.8e-21 Score=181.24 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=113.5
Q ss_pred CCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------H
Q 006859 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------I 407 (628)
Q Consensus 350 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~ 407 (628)
+-.++.++|+++++|++++.++. +|+.++|+|||||||||||++++|-. +
T Consensus 33 ~l~~v~v~r~gk~iL~~isW~V~--------~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 33 ELKNVSVRRNGKKILGDLSWQVN--------PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred EecceEEEECCEeeccccceeec--------CCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 33569999999999999999999 99999999999999999999999921 2
Q ss_pred HHhcCCcccC-------------------------------CCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHH
Q 006859 408 LAQIGCYVPA-------------------------------HFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 ~~~~g~~v~~-------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~ 456 (628)
...|| +|.+ +.........++..+|+.+..+++..++|.|++++..|+
T Consensus 105 rk~IG-~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLia 183 (257)
T COG1119 105 RKRIG-LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIA 183 (257)
T ss_pred HHHhC-ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHH
Confidence 33333 2210 011111345567788888888999999999999999999
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh--CCcEEEEEcCChhHHHHh
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS--LKAYTIFASHMENLSELA 510 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~--~~~~vi~~tH~~~l~~~~ 510 (628)
+++ .+|.++|||||+.|.|......+...+ ..+.. .+.+++++||+ ..++.
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~re~ll~~l-~~~~~~~~~~~ll~VtHh--~eEi~ 237 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIAREQLLNRL-EELAASPGAPALLFVTHH--AEEIP 237 (257)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHH-HHHhcCCCCceEEEEEcc--hhhcc
Confidence 887 889999999999999986655544433 33433 36899999999 44443
No 51
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=6.5e-21 Score=185.13 Aligned_cols=152 Identities=17% Similarity=0.242 Sum_probs=115.1
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------HHHhcCC
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------~~~~~g~ 413 (628)
++++.|++ .++++++++++. +|++++|+|||||||||||++|+|+. ...++|
T Consensus 4 ~l~~~~~~~~~~l~~v~~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~- 74 (205)
T cd03226 4 NISFSYKKGTEILDDLSLDLY--------AGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG- 74 (205)
T ss_pred cEEEEeCCcCceeeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceE-
Confidence 47888877 789999999999 99999999999999999999999953 112456
Q ss_pred cccCCCC-Cc---h-----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 414 YVPAHFS-TI---R-----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 414 ~v~~~~~-~i---~-----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
|+|+... .+ . .+..++..+++.+...+.+..+|+|++|+..+++++ .+|+++++|||+
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 6665531 00 0 234456777888778888899999999988888766 789999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+|+.....+ ..++..+.+.+.+++++||+.+. +...++++
T Consensus 155 ~~LD~~~~~~l-~~~l~~~~~~~~tii~~sH~~~~--~~~~~d~i 196 (205)
T cd03226 155 SGLDYKNMERV-GELIRELAAQGKAVIVITHDYEF--LAKVCDRV 196 (205)
T ss_pred ccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHH--HHHhCCEE
Confidence 99998665554 44555555568999999999543 33334444
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.3e-21 Score=186.50 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=108.3
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------------HHhcC
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------LAQIG 412 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------~~~~g 412 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+.- ..++|
T Consensus 5 ~l~~~~~~~~~~~~il~~vs~~i~--------~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 5 NVSKTYGGGGGAVTALEDISLSVE--------EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred EEEEEcCCCCcceEEEeceeEEEe--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEE
Confidence 47788876 789999999999 999999999999999999999999630 12344
Q ss_pred CcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|+|+....+ . .....+..+++.+...+..+.+|+|++|+..+++++ .+|+++++
T Consensus 77 -~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllL 155 (220)
T cd03293 77 -YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLL 155 (220)
T ss_pred -EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 555442111 0 122345667777777788899999999888887766 78999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHH-HhCCcEEEEEcCChh
Q 006859 468 DELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMEN 505 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l-~~~~~~vi~~tH~~~ 505 (628)
|||++|+|+.....+.. ++..+ .+.+.+++++||+.+
T Consensus 156 DEPt~~LD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 156 DEPFSALDALTREQLQE-ELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred CCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEecCHH
Confidence 99999999866665444 44444 345899999999955
No 53
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.86 E-value=4.8e-21 Score=196.98 Aligned_cols=148 Identities=14% Similarity=0.228 Sum_probs=114.3
Q ss_pred EcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCccc
Q 006859 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCYVP 416 (628)
Q Consensus 357 ~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~v~ 416 (628)
+|+++++++++++++. +|++++|+||||||||||+|+|+|+. +..++| |+|
T Consensus 2 ~y~~~~~l~~vs~~i~--------~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~ 72 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVR--------EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVP 72 (302)
T ss_pred eeCCeeEEeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-Eec
Confidence 4677889999999999 99999999999999999999999953 234567 776
Q ss_pred CCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 417 AHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 417 ~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
+.....+ .+..++..+++.+...+..+.+|+||+|+..+++++ .+|++++||||+
T Consensus 73 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 6542111 123456677887778888999999999988887766 889999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.|+|+..... .+.++..+.+.|.+++++||+. .++...++++
T Consensus 153 ~gLD~~~~~~-l~~~l~~~~~~g~tvi~~sH~~--~~~~~~~d~v 194 (302)
T TIGR01188 153 TGLDPRTRRA-IWDYIRALKEEGVTILLTTHYM--EEADKLCDRI 194 (302)
T ss_pred cCCCHHHHHH-HHHHHHHHHhCCCEEEEECCCH--HHHHHhCCEE
Confidence 9999866555 4445555666689999999994 4555555655
No 54
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=7.3e-21 Score=190.46 Aligned_cols=172 Identities=12% Similarity=0.129 Sum_probs=123.4
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------HH
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------IL 408 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------~~ 408 (628)
+|.+. ..++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+. +.
T Consensus 10 ~~~l~-i~~l~~~~~~~~il~~isl~i~--------~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~ 80 (257)
T PRK11247 10 GTPLL-LNAVSKRYGERTVLNQLDLHIP--------AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAR 80 (257)
T ss_pred CCcEE-EEEEEEEECCcceeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhh
Confidence 34443 3458899988899999999999 99999999999999999999999953 11
Q ss_pred HhcCCcccCCCCCch------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeC
Q 006859 409 AQIGCYVPAHFSTIR------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDE 469 (628)
Q Consensus 409 ~~~g~~v~~~~~~i~------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE 469 (628)
.++| |+|+....++ ....++..+++.+...+..+.+|+|++|+..+++.+ .+|+++++||
T Consensus 81 ~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE 159 (257)
T PRK11247 81 EDTR-LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159 (257)
T ss_pred CceE-EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2344 5555432110 123456677888778888899999999888887766 8899999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEee
Q 006859 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534 (628)
Q Consensus 470 ~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 534 (628)
|++|+|+.....+...+.+...+.+.+++++||+.+. +...++++ +.+.+|++....
T Consensus 160 Pt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~--~~~~~d~i------~~l~~G~i~~~~ 216 (257)
T PRK11247 160 PLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE--AVAMADRV------LLIEEGKIGLDL 216 (257)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--HHHhCCEE------EEEECCEEEeec
Confidence 9999998665554443333334458999999999553 33334444 344566665443
No 55
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=2.2e-21 Score=180.90 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=101.5
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~ 432 (628)
++++.|+.+++++++++++. +|++++|+||||||||||+++|+| ..|+.+|.+.+.+..+...
T Consensus 5 ~l~~~~~~~~vl~~i~~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~G---------~~~~~~G~v~~~g~~~~~~ 67 (163)
T cd03216 5 GITKRFGGVKALDGVSLSVR--------RGEVHALLGENGAGKSTLMKILSG---------LYKPDSGEILVDGKEVSFA 67 (163)
T ss_pred EEEEEECCeEEEeeeEEEEe--------CCCEEEEECCCCCCHHHHHHHHhC---------CCCCCCeEEEECCEECCcC
Confidence 47888888899999999999 999999999999999999999999 8888888776443222111
Q ss_pred CCccccccCcC---chHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 433 GTVDNLESNSS---TFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 433 ~~~~~~~~~~s---~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
...+...+..+ .+|+|++|+..+++++ .+|+++++|||++|+|+.....+. .++..+.+.+.+++++||+.+
T Consensus 68 ~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 68 SPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred CHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHH
Confidence 11111111122 2899999887777665 889999999999999986655533 444455556899999999965
No 56
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=8.7e-21 Score=186.36 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=117.3
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIG 412 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g 412 (628)
++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+. +...+|
T Consensus 5 ~~~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (220)
T cd03265 5 NLVKKYGDFEAVRGVSFRVR--------RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76 (220)
T ss_pred EEEEEECCEEeeeceeEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEE
Confidence 47888888889999999999 99999999999999999999999953 112345
Q ss_pred CcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|+|+..... . .+..++..+++.+...+.++.+|+|++|+..+++++ .+|+++++
T Consensus 77 -~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 77 -IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred -EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 665543211 0 123446667887777888899999999888777665 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
|||++|.|+.....+. .++..+.+ .+.+++++||+.+ .+...++++ +.+.+|++.
T Consensus 156 DEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~~tH~~~--~~~~~~d~i------~~l~~G~i~ 211 (220)
T cd03265 156 DEPTIGLDPQTRAHVW-EYIEKLKEEFGMTILLTTHYME--EAEQLCDRV------AIIDHGRII 211 (220)
T ss_pred cCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE------EEEeCCEEE
Confidence 9999999986655543 34444444 4899999999954 333334444 334555554
No 57
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.85 E-value=1.6e-20 Score=178.40 Aligned_cols=136 Identities=17% Similarity=0.237 Sum_probs=109.0
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch---------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR--------- 423 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~--------- 423 (628)
++.+.|+..++++++++++. +|++++|+||||||||||+++|+| ..++.+|.+.
T Consensus 4 ~l~~~~~~~~~l~~~~~~i~--------~G~~~~l~G~nGsGKStLl~~i~G---------~~~~~~G~v~~~g~~~~~~ 66 (180)
T cd03214 4 NLSVGYGGRTVLDDLSLSIE--------AGEIVGILGPNGAGKSTLLKTLAG---------LLKPSSGEILLDGKDLASL 66 (180)
T ss_pred EEEEEECCeeeEeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHhC---------CCCCCCcEEEECCEECCcC
Confidence 47788887789999999999 999999999999999999999999 6666665432
Q ss_pred ----------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 006859 424 ----------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492 (628)
Q Consensus 424 ----------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~ 492 (628)
+..+.+..+|+.+...+....+|+|++|+..+++.+ .+|+++++|||++|.|+.....+. .++..+.+
T Consensus 67 ~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~ 145 (180)
T cd03214 67 SPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLAR 145 (180)
T ss_pred CHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHH
Confidence 222356677888888888899999999888777665 889999999999999986655543 34555554
Q ss_pred C-CcEEEEEcCChhH
Q 006859 493 L-KAYTIFASHMENL 506 (628)
Q Consensus 493 ~-~~~vi~~tH~~~l 506 (628)
. +.+++++||+.+.
T Consensus 146 ~~~~tiii~sh~~~~ 160 (180)
T cd03214 146 ERGKTVVMVLHDLNL 160 (180)
T ss_pred hcCCEEEEEeCCHHH
Confidence 4 7899999999654
No 58
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.1e-20 Score=187.54 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=113.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------HH
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~~ 408 (628)
++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+. +.
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (235)
T cd03261 5 GLTKSFGGRTVLKGVDLDVR--------RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR 76 (235)
T ss_pred EEEEEECCEEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHh
Confidence 47888888889999999999 99999999999999999999999953 01
Q ss_pred HhcCCcccCCCCCc---h----------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 409 AQIGCYVPAHFSTI---R----------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 409 ~~~g~~v~~~~~~i---~----------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
.++| |+|+....+ . .....+..+++.+...+.++.+|+|++|+..+++++ .+|
T Consensus 77 ~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 77 RRMG-MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred cceE-EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2355 666543211 1 112345666777777788889999999988888766 789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++++|||++|+|+.....+. .++..+.+ .+.+++++||+.+ .+...++++
T Consensus 156 ~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tvi~vsH~~~--~~~~~~d~v 207 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVID-DLIRSLKKELGLTSIMVTHDLD--TAFAIADRI 207 (235)
T ss_pred CEEEecCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHH--HHHHhcCEE
Confidence 999999999999986555543 34444554 5899999999954 333444544
No 59
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.85 E-value=1.4e-20 Score=183.91 Aligned_cols=143 Identities=16% Similarity=0.193 Sum_probs=109.0
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------HHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------------------LAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------------------~~~~g~ 413 (628)
++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+.- ..++|
T Consensus 5 ~l~~~~~~~~~l~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~- 75 (213)
T cd03301 5 NVTKRFGNVTALDDLNLDIA--------DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA- 75 (213)
T ss_pred eeEEEECCeeeeeceEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE-
Confidence 47888888899999999999 999999999999999999999999530 01244
Q ss_pred cccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
|+|+....+ . ....++..+|+.+.....++.+|+|++|+..+++++ .+|+++++|
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 555442111 0 123446677887777888899999999988887766 889999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChh
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMEN 505 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~ 505 (628)
||++|.|+.....+.. ++..+.+ .+.+++++||+.+
T Consensus 156 EPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 156 EPLSNLDAKLRVQMRA-ELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHH
Confidence 9999999866555443 4444544 5899999999954
No 60
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.85 E-value=1.2e-20 Score=194.00 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=116.3
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhc
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQI 411 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~ 411 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+. ...++
T Consensus 8 ~~l~~~~~~~~~l~~vsl~i~--------~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 8 VGVSKSYGDKVVVNDLSFTIA--------RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred EeEEEEeCCeEEEcceeEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 358899998899999999999 99999999999999999999999953 12346
Q ss_pred CCcccCCCCCc---hH---------------------HHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 412 GCYVPAHFSTI---RV---------------------VDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 412 g~~v~~~~~~i---~~---------------------~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
| |+|+..... .+ ...++..+++.+...+..+.+|+|++|+..+++++ .+|++++
T Consensus 80 ~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 80 G-VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred E-EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6 666553211 11 12345566777777788899999999988887766 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||||++|+|+.....+ +.++..+.+.|.+++++||+.+ ++...++++
T Consensus 159 LDEPt~gLD~~~~~~l-~~~l~~~~~~g~til~~sH~~~--~~~~~~d~i 205 (303)
T TIGR01288 159 LDEPTTGLDPHARHLI-WERLRSLLARGKTILLTTHFME--EAERLCDRL 205 (303)
T ss_pred EeCCCcCCCHHHHHHH-HHHHHHHHhCCCEEEEECCCHH--HHHHhCCEE
Confidence 9999999998665554 4455555566899999999954 444445554
No 61
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=1.6e-20 Score=183.39 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=113.2
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|++ +++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~--------~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIK--------KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred eEEEecCCCCeeeecceEEEEc--------CCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHh
Confidence 47888877 789999999999 99999999999999999999999953 123
Q ss_pred hcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
.+| |+|+... .+ . .+..++..+++.+.+.+..+.+|+|++|+..+++++ .+|+
T Consensus 76 ~i~-~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 154 (211)
T cd03225 76 KVG-LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154 (211)
T ss_pred hce-EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 455 6665531 01 1 112345667777777888899999999888887766 7899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++|||++|+|+.....+.. ++..+.+.+.+++++||+.+ .+...++++
T Consensus 155 llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~tvi~~sH~~~--~~~~~~d~i 204 (211)
T cd03225 155 ILLLDEPTAGLDPAGRRELLE-LLKKLKAEGKTIIIVTHDLD--LLLELADRV 204 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHH--HHHHhCCEE
Confidence 999999999999866555444 44445545899999999954 333334444
No 62
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1.6e-21 Score=177.72 Aligned_cols=153 Identities=17% Similarity=0.229 Sum_probs=125.4
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIG 412 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g 412 (628)
++.++|+..++++++++++. +|+++|+.|||||||||.+.++.|++ -.|++|
T Consensus 9 ~l~K~y~kr~Vv~~Vsl~v~--------~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 9 NLAKSYKKRKVVNDVSLEVN--------SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred hhhHhhCCeeeeeeeeEEEc--------CCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 48889999999999999999 99999999999999999999999965 345555
Q ss_pred C-cccCCCCCch--------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 413 C-YVPAHFSTIR--------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 413 ~-~v~~~~~~i~--------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
. |+|++..-+. ..+.++..+++.........++|+|.+++..|++++ .+|++
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 3 7777653221 234667777777777888889999999999998877 78999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++||||++|.||..-.. ...++.+|.++|.-|+++-|+ .-+-.+.+++.
T Consensus 161 iLLDEPFAGVDPiaV~d-Iq~iI~~L~~rgiGvLITDHN--VREtL~i~dRa 209 (243)
T COG1137 161 ILLDEPFAGVDPIAVID-IQRIIKHLKDRGIGVLITDHN--VRETLDICDRA 209 (243)
T ss_pred EEecCCccCCCchhHHH-HHHHHHHHHhCCceEEEcccc--HHHHHhhhheE
Confidence 99999999999976665 456888999999999999999 55655666655
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.5e-20 Score=181.82 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=108.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------HHHhcCCcc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------ILAQIGCYV 415 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------~~~~~g~~v 415 (628)
++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+. ...++| |+
T Consensus 5 ~l~~~~~~~~~l~~v~~~i~--------~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~-~~ 75 (210)
T cd03269 5 NVTKRFGRVTALDDISFSVE--------KGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIG-YL 75 (210)
T ss_pred EEEEEECCEEEEeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEE-Ee
Confidence 47788888889999999999 99999999999999999999999953 122355 56
Q ss_pred cCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCC
Q 006859 416 PAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDEL 470 (628)
Q Consensus 416 ~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~ 470 (628)
|++...+ . .+.+.+..+++.+........+|+|++|+..+++.+ .+|+++++|||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6543211 1 123345566777667777888999999888777665 88999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 471 ~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
++|.|+.....+.. ++..+.+.+.+++++||+.+.
T Consensus 156 ~~~LD~~~~~~~~~-~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 156 FSGLDPVNVELLKD-VIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred CcCCCHHHHHHHHH-HHHHHHHCCCEEEEECCCHHH
Confidence 99999866555433 455555568999999999653
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.6e-20 Score=184.63 Aligned_cols=168 Identities=15% Similarity=0.211 Sum_probs=122.2
Q ss_pred CCEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H-------
Q 006859 352 GPLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------- 407 (628)
Q Consensus 352 ~~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------- 407 (628)
.++++.|+. .++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 9 ~~l~~~~~~~~~~~~il~~isl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 9 DNLCKRYQEGSVQTDVLHNVSFSIG--------EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred EeEEEEcCCCCcceeeEEeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHH
Confidence 348888864 478999999998 99999999999999999999999953 0
Q ss_pred ---H--HhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 408 ---L--AQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 408 ---~--~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
. ..+| |+|+....+ . .+..++..+|+.+...+....+|+|++|+..++++
T Consensus 81 ~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 81 KAELRNQKLG-FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHHhccEE-EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 1 2355 666553211 1 12345566787777778888999999988877766
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeee
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 536 (628)
+ .+|+++++|||++|+|+.....+ ..++..+.+ .|.+++++||+.+..... ..+ +.+.+|+++..+.+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~g~tvii~sH~~~~~~~~---~~~------~~l~~G~i~~~~~~ 229 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSI-FQLLGELNRLQGTAFLVVTHDLQLAKRM---SRQ------LEMRDGRLTAELSL 229 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCCEEEEEeCCHHHHHhh---CEE------EEEECCEEEEEecc
Confidence 5 88999999999999998655543 345555543 589999999996544322 222 34577888777776
Q ss_pred ec
Q 006859 537 KD 538 (628)
Q Consensus 537 ~~ 538 (628)
.+
T Consensus 230 ~~ 231 (233)
T PRK11629 230 MG 231 (233)
T ss_pred CC
Confidence 54
No 65
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.84 E-value=3.2e-20 Score=183.97 Aligned_cols=152 Identities=16% Similarity=0.200 Sum_probs=113.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH-Hh
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL-AQ 410 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~-~~ 410 (628)
++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. .. ..
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 76 (232)
T cd03218 5 NLSKRYGKRKVVNGVSLSVK--------QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLG 76 (232)
T ss_pred EEEEEeCCEEeeccceeEec--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhcc
Confidence 47888888889999999999 99999999999999999999999953 01 12
Q ss_pred cCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 411 IGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 411 ~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
+| |+|+....+ . .+..++..+++.+........+|+|++|+..+++++ .+|+++
T Consensus 77 i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 77 IG-YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL 155 (232)
T ss_pred EE-EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 45 666543211 0 123445667777777788889999999888777766 789999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++|||++|+|+.....+ ..++..+.+.+.+++++||+.+ .+...++++
T Consensus 156 llDEPt~~LD~~~~~~~-~~~l~~~~~~~~tii~~sH~~~--~~~~~~d~i 203 (232)
T cd03218 156 LLDEPFAGVDPIAVQDI-QKIIKILKDRGIGVLITDHNVR--ETLSITDRA 203 (232)
T ss_pred EecCCcccCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHH--HHHHhCCEE
Confidence 99999999998665553 3455555566899999999954 334444444
No 66
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=3.7e-20 Score=183.59 Aligned_cols=152 Identities=15% Similarity=0.181 Sum_probs=112.9
Q ss_pred CEEEEcCcc----CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------
Q 006859 353 PLAIDGGRH----PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------- 406 (628)
Q Consensus 353 ~l~~~~~~~----~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------- 406 (628)
++++.|+.+ ++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 6 ~l~~~~~~~~~~~~il~~~s~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 6 NVSKVFGDTGGKVTALKDVSLSVP--------KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred cceEEccCCCCceeeeecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH
Confidence 477888766 89999999999 99999999999999999999999953
Q ss_pred --HHHhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 407 --ILAQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 407 --~~~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
...++| |+|+....+ . .+...+..+++.+...+..+.+|+|++|+..+++++
T Consensus 78 ~~~~~~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 78 RKARRRIG-MIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHHHhheE-EEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 123455 666553211 1 123345667777777788899999999888877665
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+|++++||||++|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sH~~~--~~~~~~d~i 211 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILA-LLRDINRELGLTIVLITHEME--VVKRICDRV 211 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHH--HHHHhCCEE
Confidence 7899999999999999866555433 4444544 5899999999954 333334444
No 67
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.9e-20 Score=172.54 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=117.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------- 406 (628)
..+.+.||.+.+|+++++.+. ++.+++++||+|||||||||++..+.
T Consensus 11 ~~l~~yYg~~~aL~~i~l~i~--------~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 11 RDLNLYYGDKHALKDINLDIP--------KNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEEECchhhhccCceecc--------CCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 359999999999999999999 99999999999999999999999853
Q ss_pred ---HHHhcCCcccCCCCCc--hHHHH---------------------HHhhcC----CccccccCcCchHHHHHHHHHHH
Q 006859 407 ---ILAQIGCYVPAHFSTI--RVVDR---------------------IFTRMG----TVDNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 407 ---~~~~~g~~v~~~~~~i--~~~~~---------------------~~~~~~----~~~~~~~~~s~~s~~~~~~~~i~ 456 (628)
+..++| +|++....+ ++++. .+.... ..|.+.+..-.+|||++|+..|+
T Consensus 83 ~~~lRr~vG-MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 83 VVELRRRVG-MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHHHHhe-eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 677888 665444322 22221 122211 23556666677999999999999
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEE
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVV 524 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~ 524 (628)
+.+ ..|++++||||++.+||.....+ +.++..|+ ..-|+++|||. +.+.+...+...+++++-.
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kI-EeLi~eLk-~~yTIviVTHn--mqQAaRvSD~taFf~~G~L 226 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKI-EELITELK-KKYTIVIVTHN--MQQAARVSDYTAFFYLGEL 226 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHH-HHHHHHHH-hccEEEEEeCC--HHHHHHHhHhhhhhcccEE
Confidence 887 78999999999888887655543 33444444 46899999999 5555555555566665533
No 68
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.84 E-value=2.3e-20 Score=183.21 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=110.7
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H--------
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I-------- 407 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~-------- 407 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 5 ~l~~~~~~~~~~~~il~~~s~~i~--------~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 5 NLSKTYGGGGEKVQALKGVSLSIE--------KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred eeEEEecCCCcceeEEeeeEEEEc--------CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHH
Confidence 47788876 689999999999 99999999999999999999999953 1
Q ss_pred ---H-HhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 408 ---L-AQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 408 ---~-~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
. .++| |+|+....+ . .+...+..+|+.+...+....+|+|++|+..+++++
T Consensus 77 ~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 77 AAFRRRHIG-FVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred HHHHhhcEE-EEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 1 2355 666543111 0 123456667777777788889999999888887766
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHH
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSE 508 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~ 508 (628)
.+|++++||||+.|+|+.....+ ..++..+.+ .+.+++++||+.+...
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEV-MELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 88999999999999998655554 344555554 5899999999965443
No 69
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.84 E-value=2.3e-20 Score=191.75 Aligned_cols=152 Identities=17% Similarity=0.258 Sum_probs=116.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhc
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQI 411 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~ 411 (628)
.+++++|+.+++++++++++. +|++++|+||||||||||+|+|+|+. +..++
T Consensus 6 ~~l~~~~~~~~~l~~is~~i~--------~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 6 SSLTKLYGTQNALDEVSFEAQ--------KGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEECCEEEEEEeEEEEe--------CCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhce
Confidence 348889998899999999999 99999999999999999999999953 23456
Q ss_pred CCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 412 GCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 412 g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
| |+|+.....+ ..+..+..+|+.+...+..+.+|+||+|+..+++++ .+|++++
T Consensus 78 g-~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 78 G-YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred E-EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6 6766532111 123455667888778888899999999887777665 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||||+.|+|+..... .+..+..+.+ +.+++++||++ .++...++++
T Consensus 157 LDEPt~gLD~~~~~~-l~~~l~~~~~-~~tiii~sH~l--~~~~~~~d~i 202 (301)
T TIGR03522 157 LDEPTTGLDPNQLVE-IRNVIKNIGK-DKTIILSTHIM--QEVEAICDRV 202 (301)
T ss_pred EcCCcccCCHHHHHH-HHHHHHHhcC-CCEEEEEcCCH--HHHHHhCCEE
Confidence 999999999865555 4445555554 79999999994 4444445555
No 70
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.84 E-value=2.7e-20 Score=182.34 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=109.9
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------ 406 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------ 406 (628)
++++.|+. .++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 6 ~l~~~~~~~~~~il~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 6 QVSKAYPGGHQPALDNLNFHIT--------KGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred EEEEEecCCCeeEEEeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 47778854 469999999999 99999999999999999999999953
Q ss_pred HHHhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 407 ILAQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 407 ~~~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+..++| |+|+....+ . .+...+..+|+.+...+..+.+|+|++|+..+++++ .+
T Consensus 78 ~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (216)
T TIGR00960 78 LRRHIG-MVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHK 156 (216)
T ss_pred HHHhce-EEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 122456 666553211 1 122345667777777888899999999988888766 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
|+++++|||++|+|+.....+.. ++..+.+.+.+++++||+.+.
T Consensus 157 p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 157 PPLLLADEPTGNLDPELSRDIMR-LFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHH
Confidence 99999999999999866555443 445555568999999999553
No 71
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.84 E-value=3e-20 Score=182.38 Aligned_cols=143 Identities=16% Similarity=0.275 Sum_probs=110.2
Q ss_pred CEEEEcCcc----CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HH
Q 006859 353 PLAIDGGRH----PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~~----~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~ 408 (628)
++++.|+.+ ++++++++++. +|++++|+||||||||||+|+|+|+. +.
T Consensus 6 ~v~~~~~~~~~~~~il~~~sl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 6 ALTKRFRDVKKTVQAVDGVSFTVK--------PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred EEEEecCCCCccceeecceEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHH
Confidence 477888766 79999999999 99999999999999999999999964 12
Q ss_pred HhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 409 AQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 409 ~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
.++| |+|+....+ . .+..++..+|+.+...+....+|+|++|+..+++++ .+|+
T Consensus 78 ~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 78 RRLG-FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hhEE-EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 3455 666543111 0 123356677887777888889999999888887766 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
++++|||++|+|+.....+. .++..+.+.+.+++++||+.+
T Consensus 157 illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALR-EFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHH
Confidence 99999999999986655543 345555556899999999954
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.84 E-value=3.1e-20 Score=180.82 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=111.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. ...++|
T Consensus 5 ~l~~~~~~~~~l~~~~~~i~--------~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~- 75 (208)
T cd03268 5 DLTKTYGKKRVLDDISLHVK--------KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG- 75 (208)
T ss_pred EEEEEECCeEeEeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE-
Confidence 47888887889999999999 99999999999999999999999953 123455
Q ss_pred cccCCCCCc---h-----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 414 YVPAHFSTI---R-----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 414 ~v~~~~~~i---~-----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
|+|+....+ . .....+..+++.+...+....+|+|++|+..+++.+ .+|+++++|||++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 155 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 666553211 1 123455677777777888889999999887777665 7899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
|+|+.....+ ..++..+.+.+.+++++||+.+..
T Consensus 156 ~LD~~~~~~l-~~~l~~~~~~~~tii~~tH~~~~~ 189 (208)
T cd03268 156 GLDPDGIKEL-RELILSLRDQGITVLISSHLLSEI 189 (208)
T ss_pred cCCHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHHH
Confidence 9998665554 345555555689999999996543
No 73
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.84 E-value=2.9e-20 Score=181.86 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=112.0
Q ss_pred CEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------H
Q 006859 353 PLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------I 407 (628)
Q Consensus 353 ~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~ 407 (628)
++++.| +++++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 6 ~l~~~~~~~~~il~~is~~i~--------~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (214)
T TIGR02673 6 NVSKAYPGGVAALHDVSLHIR--------KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77 (214)
T ss_pred eeeEEeCCCceeecceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 477788 46789999999999 99999999999999999999999953 1
Q ss_pred HHhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 408 LAQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
..++| |+|+....+ . ....++..+++.+...+.+..+|+|++|+..+++.+ .+|
T Consensus 78 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (214)
T TIGR02673 78 RRRIG-VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSP 156 (214)
T ss_pred HhheE-EEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 12355 666543211 1 112345667777777778889999999888887765 789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++||||++|.|+.....+.. ++..+.+.+.+++++||+.+ .+...++++
T Consensus 157 ~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tii~~tH~~~--~~~~~~d~i 207 (214)
T TIGR02673 157 PLLLADEPTGNLDPDLSERILD-LLKRLNKRGTTVIVATHDLS--LVDRVAHRV 207 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHH--HHHHhcCEE
Confidence 9999999999999866555444 44445556899999999954 333334443
No 74
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=4e-20 Score=184.01 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=112.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------HHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------------------LAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------------------~~~~g~ 413 (628)
++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+.- ..++|
T Consensus 7 ~l~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~- 77 (239)
T cd03296 7 NVSKRFGDFVALDDVSLDIP--------SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG- 77 (239)
T ss_pred eEEEEECCEEeeeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceE-
Confidence 48888888889999999999 999999999999999999999999630 11244
Q ss_pred cccCCCCCc---h-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 414 YVPAHFSTI---R-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 414 ~v~~~~~~i---~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
|+|+....+ . ....++..+++.+...+....+|+|++|+..+++++ .+|++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 555432110 0 112345666777667778889999999988888776 78999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++|||++|+|+.....+. .++..+.+ .+.+++++||+.+ .+...++++
T Consensus 158 lllDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tvii~sH~~~--~~~~~~d~i 207 (239)
T cd03296 158 LLLDEPFGALDAKVRKELR-RWLRRLHDELHVTTVFVTHDQE--EALEVADRV 207 (239)
T ss_pred EEEcCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHH--HHHHhCCEE
Confidence 9999999999986655543 34455544 4899999999954 333444544
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.84 E-value=3.5e-20 Score=195.45 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=118.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
.++++.|+++++++++++++. +|++++|+||||||||||||+|+|+. +..+
T Consensus 7 ~nls~~y~~~~vL~~vs~~i~--------~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ 78 (402)
T PRK09536 7 SDLSVEFGDTTVLDGVDLSVR--------EGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78 (402)
T ss_pred eeEEEEECCEEEEEeeEEEEC--------CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcc
Confidence 458999999999999999999 99999999999999999999999953 2234
Q ss_pred cCCcccCCCCCc----------------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTI----------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i----------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+| ++|+..... ......+..+++.+..++....+|+|++|+..+++++ .+
T Consensus 79 ig-~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 79 VA-SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred eE-EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 56 665443210 0234456677888888888999999999988888776 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|++++||||+.|+|+.....+. .++..+.+.+.+++++||+++ .....++++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~-~lL~~l~~~g~TIIivsHdl~--~~~~~adri 209 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTL-ELVRRLVDDGKTAVAAIHDLD--LAARYCDEL 209 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEECCHH--HHHHhCCEE
Confidence 9999999999999986655544 455556656889999999954 444444544
No 76
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.84 E-value=3.8e-20 Score=181.01 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=113.3
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------HHH
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------------~~~ 409 (628)
++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 5 ~l~~~~~~~~~l~~~s~~i~--------~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (213)
T cd03262 5 NLHKSFGDFHVLKGIDLTVK--------KGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQ 76 (213)
T ss_pred EEEEEECCeEeecCceEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHh
Confidence 47888888889999999999 99999999999999999999999953 112
Q ss_pred hcCCcccCCCCCc---h----------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFSTI---R----------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~----------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
++| |+|++...+ . .+..++..+|+.+.+.+....+|+|++|+..+++++ .+|+
T Consensus 77 ~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 155 (213)
T cd03262 77 KVG-MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155 (213)
T ss_pred cce-EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCC
Confidence 345 666543211 1 112345566777777888899999999888887766 7899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++|||+.|.|+..... ...++..+.+.+.+++++||+.+ .+...++++
T Consensus 156 llllDEP~~~LD~~~~~~-l~~~l~~~~~~~~tvi~~sh~~~--~~~~~~d~i 205 (213)
T cd03262 156 VMLFDEPTSALDPELVGE-VLDVMKDLAEEGMTMVVVTHEMG--FAREVADRV 205 (213)
T ss_pred EEEEeCCccCCCHHHHHH-HHHHHHHHHHcCCEEEEEeCCHH--HHHHhCCEE
Confidence 999999999999865554 34455555556899999999954 444444444
No 77
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=5.3e-20 Score=184.53 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=111.5
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------------HHhcCCccc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------LAQIGCYVP 416 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------~~~~g~~v~ 416 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.- ...+| |+|
T Consensus 6 ~l~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-~v~ 76 (255)
T PRK11248 6 HLYADYGGKPALEDINLTLE--------SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERG-VVF 76 (255)
T ss_pred EEEEEeCCeeeEeeeeEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEE-EEe
Confidence 47888888889999999999 999999999999999999999999531 01233 455
Q ss_pred CCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 417 AHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 417 ~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
+....+ . .+..++..+|+.+...+..+.+|+|++|+..+++++ .+|+++++|||+
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 77 QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred CCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 442111 0 123445667777777778899999999888777766 789999999999
Q ss_pred CCCChHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 472 RATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l-~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+|+.....+.. ++..+ .+.+.+++++||+.+ .+...++++
T Consensus 157 ~~LD~~~~~~l~~-~L~~~~~~~g~tviivsH~~~--~~~~~~d~i 199 (255)
T PRK11248 157 GALDAFTREQMQT-LLLKLWQETGKQVLLITHDIE--EAVFMATEL 199 (255)
T ss_pred ccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 9999866555433 44444 345899999999954 333444444
No 78
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3e-20 Score=194.11 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=118.1
Q ss_pred CCEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhc
Q 006859 352 GPLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQI 411 (628)
Q Consensus 352 ~~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~ 411 (628)
.+++++| +.+++++++++++. +|++++|+||||||||||||+|+|+. ....+
T Consensus 7 ~~l~~~~~~~~~~l~~vsl~i~--------~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i 78 (356)
T PRK11650 7 QAVRKSYDGKTQVIKGIDLDVA--------DGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI 78 (356)
T ss_pred EeEEEEeCCCCEEEeeeeEEEc--------CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 3488888 78889999999999 99999999999999999999999953 11235
Q ss_pred CCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 412 GCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 412 g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
| |+|++...++ .+..++..+|+.+...+.+..+|+|++|+..+++++ .+|++++
T Consensus 79 g-~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 79 A-MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred E-EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 5 5555432211 124556777888888899999999999988888776 7899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||||++++|+.....+...+.+...+.+.+++++||+. .+....++++
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~--~ea~~l~D~i 205 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ--VEAMTLADRV 205 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhCCEE
Confidence 99999999987666655544443334589999999994 4444555555
No 79
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.83 E-value=5.1e-20 Score=183.86 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=112.5
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------H
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------I 407 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~ 407 (628)
++++.|+ ..++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 6 ~l~~~~~~~~~il~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR02315 6 NLSKVYPNGKQALKNINLNIN--------PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77 (243)
T ss_pred eeeeecCCCcceeecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHH
Confidence 4778887 7789999999999 99999999999999999999999953 1
Q ss_pred HHhcCCcccCCCCCc---h-----------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHH
Q 006859 408 LAQIGCYVPAHFSTI---R-----------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i---~-----------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i 455 (628)
..++| |+|+....+ . ....++..+++.+...+....+|+|++|+..+
T Consensus 78 ~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 78 RRRIG-MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAI 156 (243)
T ss_pred HhheE-EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 22356 666543211 1 11234556677777778888999999998888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||++|.|+.....+. .++..+. +.+.+++++||+.+ .+...++.+
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiii~tH~~~--~~~~~~d~v 216 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVM-DYLKRINKEDGITVIINLHQVD--LAKKYADRI 216 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHHcCCEEEEEeCCHH--HHHHhcCeE
Confidence 8776 889999999999999986555543 4444454 35899999999954 333444544
No 80
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.83 E-value=4.1e-20 Score=192.89 Aligned_cols=154 Identities=15% Similarity=0.164 Sum_probs=118.8
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIG 412 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g 412 (628)
.++++.|+..++++++++++. +|++++|+||||||||||||+|+|+. ....+|
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 8 DNIRKRFGAFTALKDISLSVK--------KGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred EEEEEEeCCeEEEEeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 348889998889999999998 99999999999999999999999953 122345
Q ss_pred CcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|+|++...++ .+++++..+++.+..++.+..+|+|++|+..+++++ .+|++++|
T Consensus 80 -~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 80 -IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred -EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5655543221 234566778888888899999999999988888776 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|||++++|......+...+.+...+.+.|++++||+. .+....++++
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~--~ea~~l~d~i 205 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ--EEALSMADRI 205 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHHhCCEE
Confidence 9999999987666655544444345689999999994 4444445555
No 81
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.6e-19 Score=163.70 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=117.9
Q ss_pred CEEEEcCccC--cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch-------
Q 006859 353 PLAIDGGRHP--ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR------- 423 (628)
Q Consensus 353 ~l~~~~~~~~--~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~------- 423 (628)
.+++.|.+.| +++++++++. +|+.++++||+||||||||+.++| |++|..|.+.
T Consensus 8 ~~sl~y~g~~~~~le~vsL~ia--------~ge~vv~lGpSGcGKTTLLnl~AG---------f~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 8 HLSLSYEGKPRSALEDVSLTIA--------SGELVVVLGPSGCGKTTLLNLIAG---------FVTPSRGSIQLNGRRIE 70 (259)
T ss_pred heEEecCCcchhhhhccceeec--------CCCEEEEEcCCCccHHHHHHHHhc---------CcCcccceEEECCEecc
Confidence 4888888887 9999999999 999999999999999999999999 7776665543
Q ss_pred -----------------------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 424 -----------------------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 424 -----------------------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+..+.+...|+.+.-.+.+-.+|+||+|+.-+++++ .+
T Consensus 71 gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~e 150 (259)
T COG4525 71 GPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVE 150 (259)
T ss_pred CCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcC
Confidence 345667778888888888899999999999999887 67
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
|.+++||||+...|......+..-+++.+.+.|+.++++||+.+-
T Consensus 151 P~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE 195 (259)
T COG4525 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE 195 (259)
T ss_pred cceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 999999999988888877777777788888899999999999543
No 82
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.1e-20 Score=193.68 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=115.4
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+.+++++++++++. +|++++|+||||||||||||+|+|+. ....+|
T Consensus 8 ~l~~~~~~~~vl~~vsl~i~--------~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~- 78 (369)
T PRK11000 8 NVTKAYGDVVISKDINLDIH--------EGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVG- 78 (369)
T ss_pred EEEEEeCCeEEEeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEE-
Confidence 48888988889999999999 99999999999999999999999953 112355
Q ss_pred cccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
|+|++...++ .+..++..+++.+..++..+.+|+|++|+..+++++ .+|++++||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6665432111 123456677888778888999999999988888776 789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||++|+|+.....+...+.+...+.+.+++++||+.+ +....++++
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~--~~~~~~d~i 204 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV--EAMTLADKI 204 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH--HHHHhCCEE
Confidence 9999999866665444333333345899999999954 444444554
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.83 E-value=4.6e-20 Score=183.21 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=110.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIG 412 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g 412 (628)
++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. ...++|
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 6 GLSFAYGARRALDDVSFTVR--------PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred eeEEEECCEEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 47888888889999999999 99999999999999999999999953 112345
Q ss_pred CcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|+|+..... . .+...+..+|+.+.+.+..+.+|+|++|+..+++++ .+|+++++
T Consensus 78 -~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 78 -VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred -EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666543110 0 112345667777777788899999999887777665 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHH
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSE 508 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~ 508 (628)
|||++|.|+.....+.. ++..+. +.+.+++++||+.+...
T Consensus 157 DEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVA-HVRALCRDQGLSVLWATHLVDEIE 197 (236)
T ss_pred cCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecChhhHh
Confidence 99999999876665444 444454 35899999999966543
No 84
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.83 E-value=4.3e-20 Score=181.64 Aligned_cols=145 Identities=19% Similarity=0.154 Sum_probs=105.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------HHHhcCC-cccC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------ILAQIGC-YVPA 417 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------~~~~~g~-~v~~ 417 (628)
+++++|+..++++++++++. +|++++|+||||||||||+++|+|+. ...+.+. +.|.
T Consensus 27 ~~~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 98 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEVP--------RGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPE 98 (224)
T ss_pred hhhhhcCCeEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCC
Confidence 47889999999999999999 99999999999999999999999953 0011111 1111
Q ss_pred CCC-------------Cch----HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHH
Q 006859 418 HFS-------------TIR----VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDG 479 (628)
Q Consensus 418 ~~~-------------~i~----~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~ 479 (628)
... ... ....++..+++.+...+..+.+|+|++|+..+++.+ .+|+++|+|||++|+|+...
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~ 178 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ 178 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 100 000 122344556777777788899999999888777666 88999999999999998666
Q ss_pred HHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 480 FAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 480 ~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
..+.. .+..+.+.+.+++++||+.+.
T Consensus 179 ~~~~~-~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 179 EKCQR-RLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred HHHHH-HHHHHHhCCCEEEEEeCCHHH
Confidence 55444 444444458899999999553
No 85
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=5.6e-20 Score=191.55 Aligned_cols=154 Identities=13% Similarity=0.146 Sum_probs=117.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIG 412 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g 412 (628)
.++++.|+..++++++++++. +|++++|+||||||||||||+|+|+. ....+|
T Consensus 10 ~~l~~~~~~~~~l~~isl~i~--------~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 10 KNITKRFGSNTVIDNLNLTIK--------QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred EeEEEEECCeEEEeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 358899998889999999999 99999999999999999999999954 112345
Q ss_pred CcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
+++++.+.++ .+..++..+++.+..++.++.+|+|++|+..+++++ .+|++++|
T Consensus 82 -~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 82 -MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred -EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5555432221 123456667888878888999999999988888776 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|||++++|+.....+...+.+...+.+.+++++||+. .+....++++
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~--~e~~~laD~i 207 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ--SEAFAVSDTV 207 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHHhCCEE
Confidence 9999999987766655544443344689999999994 4444444555
No 86
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.5e-20 Score=180.72 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=114.8
Q ss_pred CEEEEcCcc-CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHH
Q 006859 353 PLAIDGGRH-PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~~-~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~ 409 (628)
.+.+.|+.. ++++++++.+. +|+.++|+||||||||||+++++|+. +..
T Consensus 8 ~l~~~y~~~~~~l~~v~~~i~--------~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 8 NLSFRYPGRKAALKDVSLEIE--------KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred EEEEEcCCCceeeeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhc
Confidence 477888665 89999999999 99999999999999999999999943 122
Q ss_pred hcCCcccCCCCC------c-------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFST------I-------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~~------i-------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
++| +|.+.+.. + ..+...+..+|+.+..++.+..+|+|++|+..|+..+ ..|+
T Consensus 80 ~vG-~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 80 KVG-LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred ceE-EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 344 44322210 0 0345567778898899999999999999888777665 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhhCcce
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++||||++|.|+.....+. .++..+.+. +.|++++||+ +..+....+++
T Consensus 159 iliLDEPta~LD~~~~~~l~-~~l~~L~~~~~~tii~~tHd--~~~~~~~ad~v 209 (235)
T COG1122 159 ILLLDEPTAGLDPKGRRELL-ELLKKLKEEGGKTIIIVTHD--LELVLEYADRV 209 (235)
T ss_pred EEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCCeEEEEeCc--HHHHHhhCCEE
Confidence 99999999999986655544 455556554 7899999999 44555555555
No 87
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.83 E-value=6.4e-20 Score=182.30 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=112.6
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH-Hh
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL-AQ 410 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~-~~ 410 (628)
++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+. .. ..
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (236)
T cd03219 5 GLTKRFGGLVALDDVSFSVR--------PGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76 (236)
T ss_pred eeEEEECCEEEecCceEEec--------CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcC
Confidence 47888888889999999999 99999999999999999999999953 01 12
Q ss_pred cCCcccCCCCCc---h-------------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHH
Q 006859 411 IGCYVPAHFSTI---R-------------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 411 ~g~~v~~~~~~i---~-------------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~ 456 (628)
+| |+|+....+ . ....++..+|+.+...+..+++|+|++|+..++
T Consensus 77 i~-~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 77 IG-RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EE-EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHH
Confidence 44 665543110 0 122345567777777788889999999888877
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++ .+|+++++|||++|.|+.....+ ..++..+.+.+.+++++||+.+ .+...++++
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~vsH~~~--~~~~~~d~i 213 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEEL-AELIRELRERGITVLLVEHDMD--VVMSLADRV 213 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHH--HHHHhCCEE
Confidence 766 78999999999999998655553 3445555556899999999954 443444544
No 88
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=6.7e-20 Score=191.25 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=119.2
Q ss_pred CEEEEcC----ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------
Q 006859 353 PLAIDGG----RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------- 406 (628)
Q Consensus 353 ~l~~~~~----~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------- 406 (628)
++++.|+ .+++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl~i~--------~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 6 NISKVFPQGGRTIHALNNVSLHIP--------AGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred eEEEEeCCCCCceEEEEeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH
Confidence 4778886 4679999999999 99999999999999999999999953
Q ss_pred --HHHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 407 --ILAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 407 --~~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
+..++| |+|+....++ .....+..+|+.+...+..+.+|+|++|+..+++++
T Consensus 78 ~~~~~~ig-~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 78 RKARRQIG-MIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HHHhcCEE-EEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 123466 6665532111 122345667887778888899999999988888766
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
.+|+++++|||++|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++ ..+++|++..
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiilvtH~~~--~i~~~~d~v------~~l~~G~i~~ 221 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILE-LLKDINRELGLTIVLITHEMD--VVKRICDRV------AVIDAGRLVE 221 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE------EEEECCEEEE
Confidence 8899999999999999866555443 4444543 5899999999954 444445555 3345666553
No 89
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.83 E-value=7.2e-20 Score=189.70 Aligned_cols=162 Identities=21% Similarity=0.226 Sum_probs=120.6
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------- 406 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------- 406 (628)
++++.|+. .++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 6 ~lsk~y~~~~~~~~~L~~vsl~i~--------~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 6 NITKVFHQGTKTIQALNNVSLHVP--------AGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEECCCCcceEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 47777742 478999999999 99999999999999999999999953
Q ss_pred --HHHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 407 --ILAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 407 --~~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
....+| ++|+....++ .+...+..+|+.+..++.++.+|+|++|+..+++++
T Consensus 78 ~~~r~~Ig-~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 78 TKARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred HHHhcCEE-EEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 122466 6665532211 123456778888888899999999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
.+|+++++|||++++|+.....+. .++..+.+ .+.|++++||+++ .+...++++ +.+++|+++.
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~-~lL~~l~~~~g~tiiliTH~~~--~v~~~~d~v------~vl~~G~iv~ 221 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSIL-ELLKEINRRLGLTILLITHEMD--VVKRICDCV------AVISNGELIE 221 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE------EEEECCEEEE
Confidence 889999999999999986666543 34555544 5899999999954 444445555 4445666553
No 90
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.83 E-value=7.1e-20 Score=185.27 Aligned_cols=154 Identities=18% Similarity=0.152 Sum_probs=113.1
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H----------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I---------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~---------- 407 (628)
-.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVP--------RGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHH
Confidence 3458888988889999999999 99999999999999999999999953 0
Q ss_pred -HHhcCCcccCCCCCc---hH----------------------HHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 408 -LAQIGCYVPAHFSTI---RV----------------------VDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 408 -~~~~g~~v~~~~~~i---~~----------------------~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
..++| |+|+....+ .+ ....+..+|+.+...+..+.+|+|++|+..+++++ .
T Consensus 82 ~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 82 VRKRMS-MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred HhhcEE-EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 12355 666543211 10 11235566777777778899999999988887766 7
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+++++|||+.|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~--~~~~~~d~v 214 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVK-LISELNSALGVTCVVVSHDVP--EVLSIADHA 214 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCcEEEEEecCHH--HHHHhhCEE
Confidence 899999999999999866555444 4444544 4899999999944 333334444
No 91
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=9.7e-20 Score=181.66 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=112.0
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------H
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------I 407 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~ 407 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 5 ~l~~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 5 NLSKTYPNGKKALKDVSLSIN--------PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred eEEEecCCccEEEecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 47888876 789999999999 99999999999999999999999953 0
Q ss_pred HHhcCCcccCCCCCc---h-----------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHH
Q 006859 408 LAQIGCYVPAHFSTI---R-----------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i---~-----------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+ . .+..++..+++.+...+....+|+|++|+..+
T Consensus 77 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 77 RRQIG-MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HhccE-EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHH
Confidence 12345 666543111 1 11233556677766777888999999998888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||++|+|+.....+. .++..+.+ .+.+++++||+.+ .+...++.+
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~--~~~~~~d~v 215 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVM-DLLKRINREEGITVIVSLHQVD--LAREYADRI 215 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 8766 889999999999999986655543 44555544 5899999999954 333444544
No 92
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.83 E-value=7e-20 Score=179.22 Aligned_cols=144 Identities=16% Similarity=0.236 Sum_probs=108.6
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------H
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------I 407 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~ 407 (628)
++++.|++ +++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 5 ~l~~~~~~~~~~l~~~sl~i~--------~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 76 (214)
T cd03292 5 NVTKTYPNGTAALDGINISIS--------AGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76 (214)
T ss_pred EEEEEeCCCceeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 47788854 679999999999 99999999999999999999999953 1
Q ss_pred HHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 408 LAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
..+++ |+|+....++ ....++..+|+.+...+....+|+|++|+..+++++ .+|
T Consensus 77 ~~~i~-~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (214)
T cd03292 77 RRKIG-VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP 155 (214)
T ss_pred HHheE-EEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCC
Confidence 12355 6665432111 122345666777777778889999999888877766 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
+++++|||++|.|+.....+. .++..+.+.+.+++++||+.+.
T Consensus 156 ~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 156 TILIADEPTGNLDPDTTWEIM-NLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred CEEEEeCCCCcCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHH
Confidence 999999999999986655543 3444555568999999999543
No 93
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.83 E-value=7.7e-20 Score=191.08 Aligned_cols=153 Identities=14% Similarity=0.200 Sum_probs=115.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH---------------------HHh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------------------LAQ 410 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------------------~~~ 410 (628)
.+++++|+..++++++++++. +|++++|+||||||||||||+|+|+.- ...
T Consensus 9 ~~l~~~~~~~~~l~~vsl~i~--------~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 9 DHLRVAYGANTVLDDLSLEIE--------AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEECCeEEEeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 348889988889999999998 999999999999999999999999421 112
Q ss_pred cCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 411 IGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 411 ~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
+| |++++...++ .+..++..+++.+..++.+..+|+|++|+..+++++ .+|+++
T Consensus 81 ig-~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 81 LA-LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred EE-EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 33 4444332111 133456777888888899999999999988888776 889999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHh-C-CcEEEEEcCChhHHHHhhhCcce
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLS-L-KAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~-~-~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+||||++|+|+.....+...+ ..+.+ . +.|++++||+. .+....++++
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l-~~l~~~~~g~til~vTHd~--~ea~~l~dri 209 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEI-AALHEELPELTILCVTHDQ--DDALTLADKA 209 (362)
T ss_pred EEcCccccCCHHHHHHHHHHH-HHHHHhCCCCEEEEEeCCH--HHHHHhCCEE
Confidence 999999999987666654444 44444 3 79999999994 4444455655
No 94
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.83 E-value=1e-19 Score=182.48 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=113.0
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H-----------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I----------- 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~----------- 407 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (250)
T PRK11264 7 KNLVKKFHGQTVLHGIDLEVK--------PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKG 78 (250)
T ss_pred eceEEEECCeeeeccceEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhh
Confidence 458888988889999999999 99999999999999999999999953 0
Q ss_pred -----HHhcCCcccCCCCCc---h----------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHH
Q 006859 408 -----LAQIGCYVPAHFSTI---R----------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 408 -----~~~~g~~v~~~~~~i---~----------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
..++| |+|+....+ . .+...+..+|+.+..+...+.+|+|++|+..+++
T Consensus 79 ~~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~ 157 (250)
T PRK11264 79 LIRQLRQHVG-FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157 (250)
T ss_pred HHHHhhhhEE-EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHH
Confidence 12345 666543211 1 1123355567766677788899999998888877
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++ .+|+++++|||++|+|+.....+ ..++..+.+.+.+++++||+.+ .+...++++
T Consensus 158 al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~~~~~~~tvi~~tH~~~--~~~~~~d~i 214 (250)
T PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEV-LNTIRQLAQEKRTMVIVTHEMS--FARDVADRA 214 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHH--HHHHhcCEE
Confidence 66 88999999999999998655543 3345555556899999999954 333444444
No 95
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=9.1e-20 Score=185.71 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=122.5
Q ss_pred ccCCCCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------
Q 006859 348 FTENGPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------- 406 (628)
Q Consensus 348 ~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------- 406 (628)
+.+-.++++.|+ ++++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIK--------KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcch
Confidence 344456899996 6889999999999 99999999999999999999999953
Q ss_pred ---HHHhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 407 ---ILAQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 407 ---~~~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
+...+| |+|++.. .+ . .....+..+|+.+..++....+|+|++|+..++++
T Consensus 77 ~~~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 77 LMKLRESVG-MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHHHHhhEE-EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 123466 7766531 10 1 12334566777777788899999999998888877
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+ .+|+++++|||+.|.|+.....+.. ++..+.+ .|.+++++||+.+ .+...++++ ..+.+|++.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tillvsH~~~--~~~~~~dri------~~l~~G~i~ 221 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMK-LLVEMQKELGLTIIIATHDID--IVPLYCDNV------FVMKEGRVI 221 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCHH--HHHHhCCEE------EEEECCEEE
Confidence 6 8899999999999999866555433 4444554 4899999999954 344445544 344566654
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.2e-19 Score=185.05 Aligned_cols=161 Identities=18% Similarity=0.211 Sum_probs=117.9
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------- 406 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------- 406 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 7 ~l~~~y~~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 7 NLTHIYMEGTPFEKKALDNVNIEIE--------DGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEECCCCCccccceeeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccH
Confidence 47777764 479999999999 99999999999999999999999953
Q ss_pred --HHHhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCc--cccccCcCchHHHHHHHHHHHH
Q 006859 407 --ILAQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTV--DNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 407 --~~~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~--~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
+..++| |+|+... .+ . ....++..+|+. +...+..+.+|+|++|+..+++
T Consensus 79 ~~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 79 SDIRKKVG-LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred HHHhhceE-EEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 123466 7776531 10 1 123456667776 4577888999999999888887
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++ .+|+++++|||+.|+|+.....+ ..++..+.+ .+.|++++||+++ .....++++ +.+.+|++.
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l-~~~l~~l~~~~g~tvi~vtHd~~--~~~~~~drv------~~l~~G~i~ 224 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEI-LNKIKELHKEYNMTIILVSHSME--DVAKLADRI------IVMNKGKCE 224 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE------EEEECCEEE
Confidence 76 78999999999999998665554 345555554 4899999999954 333444554 344555554
No 97
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.83 E-value=8.2e-20 Score=179.66 Aligned_cols=145 Identities=15% Similarity=0.212 Sum_probs=109.2
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H--------
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I-------- 407 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~-------- 407 (628)
++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 6 ~v~~~~~~~~~~~~~l~~isl~i~--------~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 6 NLGKRYQEGKLDTRVLKGVSLSIG--------KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred eeeEEccCCCcceEeEeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHH
Confidence 36777753 478999999999 99999999999999999999999953 0
Q ss_pred ---H-HhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 408 ---L-AQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 408 ---~-~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
. ..+| |+|+....+ . .+..++..+|+.+...+....+|+|++|+..+++.+
T Consensus 78 ~~~~~~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 78 AKLRNKKLG-FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HHHHHhcEE-EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1 2356 666553211 1 123455667777777888899999999988887766
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHH
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLS 507 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~ 507 (628)
.+|++++||||++|+|+.....+. .++..+.+ .+.+++++||+.+..
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIF-DLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHH
Confidence 789999999999999986655544 34444543 589999999996544
No 98
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.83 E-value=1e-19 Score=178.79 Aligned_cols=143 Identities=17% Similarity=0.213 Sum_probs=108.1
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHh
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~ 410 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+. +..+
T Consensus 5 ~l~~~~~~~~~~il~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 5 NLTKTYKKGTKPAVDDLSLNVY--------KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred eeEEEeCCCCceeecceEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 47788876 789999999999 99999999999999999999999953 1234
Q ss_pred cCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 411 IGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 411 ~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
+| |+|+....+ . ....++..+++.+......+.+|+|++|+..+++.+ .+|+++
T Consensus 77 i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 155 (220)
T cd03263 77 LG-YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVL 155 (220)
T ss_pred EE-EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 55 666543211 0 123445667777777788889999999888877665 889999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
++|||+.|.|+.....+. .++..+.+ +.+++++||+++.
T Consensus 156 llDEP~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~~ 194 (220)
T cd03263 156 LLDEPTSGLDPASRRAIW-DLILEVRK-GRSIILTTHSMDE 194 (220)
T ss_pred EECCCCCCCCHHHHHHHH-HHHHHHhc-CCEEEEEcCCHHH
Confidence 999999999986555533 34444444 5899999999654
No 99
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=6.8e-20 Score=172.16 Aligned_cols=152 Identities=16% Similarity=0.210 Sum_probs=113.7
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhc
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQI 411 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~ 411 (628)
.+++..||.-++|.++++++. .|++++|+||||+||||+||+|+|+. -.+..
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~--------~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVE--------RGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred EeEeecccceeEEeeeeeEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 458999999999999999999 99999999999999999999999954 12222
Q ss_pred CC-cccCCCCCch-----------------------HHHHHHhhcC-CccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 412 GC-YVPAHFSTIR-----------------------VVDRIFTRMG-TVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 412 g~-~v~~~~~~i~-----------------------~~~~~~~~~~-~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
|. |||.....++ ..+.+|+.|. +.+...+..+++|+|++|+..|.+++ +.|+++
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 21 5554322111 1344555443 44566777889999999999888877 889999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHH-HHhhh
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLS-ELATI 512 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~-~~~~~ 512 (628)
+||||+.|+.|.-...+.. ++..+.+ .+.+|+.+-++...+ +++++
T Consensus 159 LLDEPs~GLaP~iv~~I~~-~i~~l~~~~g~tIlLVEQn~~~Al~iaDr 206 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFE-AIKELRKEGGMTILLVEQNARFALEIADR 206 (237)
T ss_pred EecCCccCcCHHHHHHHHH-HHHHHHHcCCcEEEEEeccHHHHHHhhCE
Confidence 9999999999976666555 4455664 478999999996554 34444
No 100
>PRK10908 cell division protein FtsE; Provisional
Probab=99.83 E-value=1e-19 Score=178.97 Aligned_cols=144 Identities=18% Similarity=0.238 Sum_probs=109.6
Q ss_pred CEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------H
Q 006859 353 PLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------I 407 (628)
Q Consensus 353 ~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~ 407 (628)
++++.| +..++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 77 (222)
T PRK10908 6 HVSKAYLGGRQALQGVTFHMR--------PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77 (222)
T ss_pred eeEEEecCCCeEEeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHH
Confidence 477888 66789999999998 99999999999999999999999953 1
Q ss_pred HHhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 408 LAQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
...+| |+|+....+ . .....+..+++.+...+..+.+|+|++|+..+++++ .+|
T Consensus 78 ~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (222)
T PRK10908 78 RRQIG-MIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKP 156 (222)
T ss_pred HhheE-EEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCC
Confidence 12355 666543211 1 112455667777777788899999999988887776 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
+++++|||+.|+|+.....+.. ++..+.+.+.+++++||+.+.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~ 199 (222)
T PRK10908 157 AVLLADEPTGNLDDALSEGILR-LFEEFNRVGVTVLMATHDIGL 199 (222)
T ss_pred CEEEEeCCCCcCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHH
Confidence 9999999999999865555443 445555568999999999553
No 101
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.82 E-value=1.1e-19 Score=182.78 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=113.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQI 411 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~ 411 (628)
++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. +..++
T Consensus 7 ~l~~~~~~~~il~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 7 NLSVRLGGRTLLDDVSLTLR--------PGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeCCeeeeeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 48888988889999999999 99999999999999999999999963 11234
Q ss_pred CCcccCCCCC---ch---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCC-------
Q 006859 412 GCYVPAHFST---IR---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS------- 460 (628)
Q Consensus 412 g~~v~~~~~~---i~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~------- 460 (628)
| |+|+.... .. ....++..+++.+...+....+|+|++|+..+++++.
T Consensus 79 ~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 79 A-VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred E-EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 5 66554311 01 1233456677777778888999999999888887774
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+++++|||++|+|+.....+.. ++..+. +.+.+++++||+++ .+...++++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~--~~~~~~d~i 211 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLR-LARQLAHERGLAVIVVLHDLN--LAARYADRI 211 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHH--HHHHhcCEE
Confidence 899999999999999866655444 444444 56899999999954 333344544
No 102
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.82 E-value=8.4e-20 Score=180.45 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=110.3
Q ss_pred CCCEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H------
Q 006859 351 NGPLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------ 407 (628)
Q Consensus 351 ~~~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------ 407 (628)
..++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVK--------RGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEc--------CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH
Confidence 3458888865 368999999998 99999999999999999999999963 0
Q ss_pred ------HHhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHH
Q 006859 408 ------LAQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 408 ------~~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
...+| |+|+....+ . .+...+..+++.+...+.+..+|+|++|+..+++
T Consensus 81 ~~~~~~~~~i~-~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 81 ARAKLRAKHVG-FVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHHHHHhheEE-EEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 02355 666553211 1 1223456677777777888899999999888877
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHH
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSE 508 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~ 508 (628)
.+ .+|+++++|||+.|+|+.....+. .++..+. +.+.+++++||+.+..+
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIA-DLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHH
Confidence 66 789999999999999986655543 3444454 45899999999976443
No 103
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=5.9e-20 Score=183.50 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=113.4
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------HHhcCCcccCCCC
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------LAQIGCYVPAHFS 420 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------~~~~g~~v~~~~~ 420 (628)
-.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+.- ...+| |+|+...
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~--------~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~-~v~q~~~ 77 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELK--------PGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIG-YVPQKLY 77 (251)
T ss_pred EeceEEEECCceEEEeEEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEE-Eeccccc
Confidence 3458899988889999999999 999999999999999999999999531 11344 5554421
Q ss_pred C---c--h--------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHH
Q 006859 421 T---I--R--------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGF 480 (628)
Q Consensus 421 ~---i--~--------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~ 480 (628)
. + . .+...+..+++.+...+....+|+|++|+..+++++ .+|+++++|||++|+|+....
T Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 157 (251)
T PRK09544 78 LDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157 (251)
T ss_pred cccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 1 0 0 122345667777777888899999999888877766 889999999999999986655
Q ss_pred HHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 481 ~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 158 ~l~~-~L~~~~~~~g~tiiivsH~~~--~i~~~~d~i 191 (251)
T PRK09544 158 ALYD-LIDQLRRELDCAVLMVSHDLH--LVMAKTDEV 191 (251)
T ss_pred HHHH-HHHHHHHhcCCEEEEEecCHH--HHHHhCCEE
Confidence 5433 4444444 4899999999954 443444444
No 104
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.82 E-value=9.3e-20 Score=180.38 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=110.3
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHHh
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~~ 410 (628)
++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. ....
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (230)
T TIGR03410 5 NLNVYYGQSHILRGVSLEVP--------KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAG 76 (230)
T ss_pred eEEEEeCCeEEecceeeEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhC
Confidence 47888888899999999999 99999999999999999999999953 0123
Q ss_pred cCCcccCCCCCch---H------------------HHHHHhhcC-CccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 411 IGCYVPAHFSTIR---V------------------VDRIFTRMG-TVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 411 ~g~~v~~~~~~i~---~------------------~~~~~~~~~-~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
+| |+|++...+. + ...++..++ +.+...+..+.+|+|++|...+++.+ .+|+++++
T Consensus 77 i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 77 IA-YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred eE-EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 55 6666543211 1 122333343 34456677888999999888887666 78999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|||++|+|+.....+. .++..+.+ .+.+++++||+.+ .+...++++
T Consensus 156 DEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~~sH~~~--~~~~~~d~v 202 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIG-RVIRRLRAEGGMAILLVEQYLD--FARELADRY 202 (230)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHHcCCcEEEEEeCCHH--HHHHhCCEE
Confidence 9999999986655544 34444554 4899999999954 444444544
No 105
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.82 E-value=1.1e-19 Score=189.68 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=116.0
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+..++++++++++. +|++++|+||||||||||||+|+|+. ....+|
T Consensus 7 ~l~~~~~~~~~l~~isl~i~--------~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~- 77 (353)
T PRK10851 7 NIKKSFGRTQVLNDISLDIP--------SGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG- 77 (353)
T ss_pred EEEEEeCCeEEEEEeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEE-
Confidence 47888888889999999999 99999999999999999999999953 112344
Q ss_pred cccCCCCCch----------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 414 YVPAHFSTIR----------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 414 ~v~~~~~~i~----------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
|+|++...++ .+..++..+++.+..++.+..+|+|++|+..+++++ .+|++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 5554431110 223456677888888888999999999988888776 88999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++|||++|+|+.....+...+.+...+.+.+++++||+. .+....++++
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~--~ea~~~~Dri 207 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ--EEAMEVADRV 207 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhCCEE
Confidence 9999999999987766655444443334589999999994 4444445555
No 106
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-19 Score=184.04 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=116.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------HHH
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------------~~~ 409 (628)
++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 6 ~l~~~~~~~~il~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 6 DLWFRYQDEPVLKGLNLDFS--------LSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred EEEEEcCCcccccceEEEEc--------CCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 47888888889999999999 99999999999999999999999953 112
Q ss_pred hcCCcccCCCC------Cch-------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFS------TIR-------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~------~i~-------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
++| |+|++.. .+. .....+..+|+.+...+..+.+|+|++|+..+++.+ .+|+
T Consensus 78 ~i~-~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 78 QVA-TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred heE-EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 456 6665431 110 012244556776667778889999999888887766 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++|+|||++|+|+.....+. .++..+.+.+.+++++||+.+. +...++++ ..+.+|++.
T Consensus 157 lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~vtH~~~~--~~~~~d~i------~~l~~G~i~ 215 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMI-AIIRRIVAQGNHVIISSHDIDL--IYEISDAV------YVLRQGQIL 215 (271)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHH--HHHhCCEE------EEEECCEEE
Confidence 99999999999986555543 3444555568999999999553 33334444 334455554
No 107
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7e-20 Score=185.21 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=113.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------------ 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------------ 407 (628)
++.+.|+.+++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 29 ~~~~~~~~~~il~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 100 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVR--------EGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100 (269)
T ss_pred hhhhhcCCceEeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhh
Confidence 47788888999999999999 99999999999999999999999953 0
Q ss_pred HHhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 408 LAQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
..++| |+|+....+ . .+...+..+++.+...+.+..+|+|++|+..+++++ .+|
T Consensus 101 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p 179 (269)
T cd03294 101 RKKIS-MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDP 179 (269)
T ss_pred cCcEE-EEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 02355 666543211 0 122345667887777888899999999988887766 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++++|||+.|+|+.....+.. ++..+. +.|.+++++||+.+ .+...++.+
T Consensus 180 ~illLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiii~tH~~~--~~~~~~d~v 231 (269)
T cd03294 180 DILLMDEAFSALDPLIRREMQD-ELLRLQAELQKTIVFITHDLD--EALRLGDRI 231 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhcCEE
Confidence 9999999999999866555443 444444 45899999999954 333344444
No 108
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-19 Score=183.96 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=120.1
Q ss_pred CCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 352 GPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
.++++.|+ .+++++++++++. +|++++|+||||||||||+++|+|+. +..
T Consensus 8 ~~l~~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (274)
T PRK13647 8 EDLHFRYKDGTKALKGLSLSIP--------EGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS 79 (274)
T ss_pred EEEEEEeCCCCeeeeeEEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHh
Confidence 45888885 5789999999999 99999999999999999999999953 223
Q ss_pred hcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
++| |+|+... .+ . ....++..+|+.+...+.+..+|+|++|+..+++++ .+|+
T Consensus 80 ~i~-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 80 KVG-LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hEE-EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 466 6666531 00 1 123345566777777888899999999988888776 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++++|||+.|+|+.....+ ..++..+.+.+.|++++||+.+. ....++++ +.+++|++..
T Consensus 159 llllDEPt~~LD~~~~~~l-~~~l~~~~~~g~tili~tH~~~~--~~~~~d~i------~~l~~G~i~~ 218 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETL-MEILDRLHNQGKTVIVATHDVDL--AAEWADQV------IVLKEGRVLA 218 (274)
T ss_pred EEEEECCCcCCCHHHHHHH-HHHHHHHHHCCCEEEEEeCCHHH--HHHhCCEE------EEEECCEEEE
Confidence 9999999999998666654 34455555558999999999554 33334444 3445666553
No 109
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.82 E-value=9.5e-20 Score=191.08 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=116.9
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIG 412 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g 412 (628)
.++++.|+..++++++++++. +|++++|+||||||||||||+|+|+. ....+|
T Consensus 18 ~~l~~~~~~~~~l~~vsl~i~--------~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 18 RGISKSFDGKEVISNLDLTIN--------NGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred EEEEEEECCeEEEeeeEEEEe--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 458889988889999999998 99999999999999999999999953 112344
Q ss_pred CcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|++++.+.++ .+...+..+++.+..++.+..+|+|++|+..+++++ .+|++++|
T Consensus 90 -~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 90 -TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred -EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5554432211 123456667888888889999999999988888776 78999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|||++++|......+...+.+...+.+.+++++||+.+ +.....+++
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~--ea~~laDri 215 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE--EALTMSDRI 215 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 99999999876666544444433446899999999944 444445555
No 110
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.3e-19 Score=180.60 Aligned_cols=161 Identities=16% Similarity=0.255 Sum_probs=116.1
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+++|+|+. +...
T Consensus 5 ~l~~~~~~~~~~l~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 5 NVTKRYGGGKKAVNNLNLEIA--------KGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred EEEEEeCCcceEeeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 47788887 789999999999 99999999999999999999999953 1123
Q ss_pred cCCcccCCCCCc---h---------------------HHHHHHhhcCCcc--ccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 411 IGCYVPAHFSTI---R---------------------VVDRIFTRMGTVD--NLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 411 ~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~--~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
+| |+|+....+ + .+..++..+++.. ...+..+.+|+|++|+..+++++ .+|+
T Consensus 77 i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 77 IG-YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred eE-EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 45 666543211 0 1223456677764 56778889999999988887776 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++++|||++|.|+.....+ ..++..+.+ .+.+++++||+.+ .+...++++ ..+.+|+++
T Consensus 156 llllDEPt~~LD~~~~~~l-~~~L~~~~~~~g~tvii~sH~~~--~~~~~~d~i------~~l~~G~i~ 215 (242)
T cd03295 156 LLLMDEPFGALDPITRDQL-QEEFKRLQQELGKTIVFVTHDID--EAFRLADRI------AIMKNGEIV 215 (242)
T ss_pred EEEecCCcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEecCHH--HHHHhCCEE------EEEECCEEE
Confidence 9999999999998655543 334444544 4899999999954 333334444 344555554
No 111
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.82 E-value=9.7e-20 Score=179.29 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=110.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------H-HHh
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------I-LAQ 410 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~-~~~ 410 (628)
++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. . ..+
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (222)
T cd03224 5 NLNAGYGKSQILFGVSLTVP--------EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAG 76 (222)
T ss_pred eEEeecCCeeEeeeeeEEEc--------CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcC
Confidence 47888888889999999999 99999999999999999999999953 1 123
Q ss_pred cCCcccCCCCCch---H-------------------HHHHHhhc-CCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 411 IGCYVPAHFSTIR---V-------------------VDRIFTRM-GTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 411 ~g~~v~~~~~~i~---~-------------------~~~~~~~~-~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
+| |+|+....++ + ...++..+ ++.+........+|+|++|+..+++++ .+|++++
T Consensus 77 i~-~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 155 (222)
T cd03224 77 IG-YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLL 155 (222)
T ss_pred eE-EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55 6665532111 1 11233444 345556777888999999888887766 7899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|||++|+|+.....+. .++..+.+.+.+++++||+.+ .+...++++
T Consensus 156 lDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~--~~~~~~d~i 202 (222)
T cd03224 156 LDEPSEGLAPKIVEEIF-EAIRELRDEGVTILLVEQNAR--FALEIADRA 202 (222)
T ss_pred ECCCcccCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHH--HHHHhccEE
Confidence 99999999986655543 344455556899999999955 333334444
No 112
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.82 E-value=7.1e-20 Score=178.07 Aligned_cols=146 Identities=17% Similarity=0.227 Sum_probs=110.7
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------------ 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------------ 407 (628)
++.+.|+.+++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 3 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 3 NISKKFGDKIILDDLNLTIE--------KGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred ceEEEECCEEEEeceEEEEe--------CCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 47888888889999999999 99999999999999999999999953 0
Q ss_pred HHhcCCcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 408 LAQIGCYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
...+| |+++....+ . .+..++..+|+.+...+....+|+|++|+..+++++ .+|
T Consensus 75 ~~~i~-~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 75 REKLG-YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred HhCee-EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 11345 555442111 0 123356667777777888889999999888887766 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
+++++|||+.|.|+.....+ ..++..+.+.+.+++++||+.++..
T Consensus 154 ~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEV-LDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 99999999999998665553 3344555555899999999976544
No 113
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.82 E-value=1e-19 Score=177.86 Aligned_cols=152 Identities=21% Similarity=0.316 Sum_probs=113.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------HHHhcCCccc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------ILAQIGCYVP 416 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------~~~~~g~~v~ 416 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. ...++| |+|
T Consensus 4 ~l~~~~~~~~~l~~isl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~-~v~ 74 (213)
T cd03235 4 DLTVSYGGHPVLEDVSFEVK--------PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG-YVP 74 (213)
T ss_pred cceeEECCEEeeecceeEEc--------CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheE-Eec
Confidence 47888887789999999999 99999999999999999999999953 123455 666
Q ss_pred CCCCC-----ch-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 417 AHFST-----IR-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 417 ~~~~~-----i~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
++... .. ....++..+++.+...+..+.+|+|++|+..+++++ .+|+++
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 154 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL 154 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 54211 00 122345666777777788899999999988887766 789999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++|||++|+|+.....+.. ++..+.+.+.+++++||+.+ .+...++++
T Consensus 155 llDEPt~~LD~~~~~~l~~-~l~~~~~~~~tvi~~sH~~~--~~~~~~d~i 202 (213)
T cd03235 155 LLDEPFAGVDPKTQEDIYE-LLRELRREGMTILVVTHDLG--LVLEYFDRV 202 (213)
T ss_pred EEeCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHH--HHHHhcCEE
Confidence 9999999999866655444 44444446899999999954 333334443
No 114
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=1.4e-19 Score=180.25 Aligned_cols=161 Identities=16% Similarity=0.253 Sum_probs=117.4
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------HHH
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------------~~~ 409 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. +..
T Consensus 6 ~l~~~~~~~~il~~~s~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (240)
T PRK09493 6 NVSKHFGPTQVLHNIDLNID--------QGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQ 77 (240)
T ss_pred eEEEEECCeEEeeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhh
Confidence 47788887789999999999 99999999999999999999999953 012
Q ss_pred hcCCcccCCCCCc---h----------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFSTI---R----------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~----------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
++| |+|+....+ . ....++..+|+.+...+..+.+|+|++|+..+++++ .+|+
T Consensus 78 ~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 78 EAG-MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred ceE-EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 345 666543111 0 112345667777777888899999999888887766 7899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++++|||+.|.|+.....+.. ++..+.+.+.+++++||+.+. ....++++ +.+.+|+++
T Consensus 157 llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~tiii~sH~~~~--~~~~~d~i------~~l~~G~i~ 215 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIGF--AEKVASRL------IFIDKGRIA 215 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHH--HHHhCCEE------EEEECCEEE
Confidence 999999999999866555444 455555568999999999554 33334444 334455554
No 115
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=180.80 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=113.0
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHH
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~ 409 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. ...
T Consensus 7 ~~l~~~~~~~~~l~~~sl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (241)
T PRK10895 7 KNLAKAYKGRRVVEDVSLTVN--------SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78 (241)
T ss_pred eCcEEEeCCEEEEeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHh
Confidence 348888888889999999999 99999999999999999999999953 112
Q ss_pred hcCCcccCCCCCc---h----------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFSTI---R----------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~----------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
++| |+|+....+ . ....++..+++.+........+|+|++|+..+++.+ .+|+
T Consensus 79 ~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 79 GIG-YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred CeE-EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 355 666543111 1 123345566666666777888999999888877666 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++|||+.|.|+.....+ ..++..+.+.+.+++++||+.+ .+...++++
T Consensus 158 llllDEPt~~LD~~~~~~l-~~~l~~~~~~g~tiii~sH~~~--~~~~~~d~v 207 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDI-KRIIEHLRDSGLGVLITDHNVR--ETLAVCERA 207 (241)
T ss_pred EEEEcCCcccCCHHHHHHH-HHHHHHHHhcCCEEEEEEcCHH--HHHHhcCEE
Confidence 9999999999998655543 4455556667899999999953 333334444
No 116
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=4.9e-20 Score=175.74 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=117.7
Q ss_pred CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCcccCC
Q 006859 359 GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCYVPAH 418 (628)
Q Consensus 359 ~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~v~~~ 418 (628)
...+++.+++++++ +|++++++|||||||||+||++.|+. +..++| +|...
T Consensus 35 ~~~~AVqdisf~IP--------~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~-~v~gq 105 (325)
T COG4586 35 RSIEAVQDISFEIP--------KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG-LVMGQ 105 (325)
T ss_pred hhhhhhheeeeecC--------CCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHH-HHhhh
Confidence 34457788888888 99999999999999999999999954 223333 11111
Q ss_pred C-C---------Cch---------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 419 F-S---------TIR---------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 419 ~-~---------~i~---------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
. + ++. ..+....-+++...+..+...+|.|++..+.+++.+ .+|.+++||||+-
T Consensus 106 k~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 106 KLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 1 0 001 112223345667778888889999999877777665 8999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeee
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQL 536 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 536 (628)
|+|.....++...+.++-.++++||+.+||+ +.++...+.+| +.++.|+++|+..+
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~--~~di~~lc~rv------~~I~~Gqlv~dg~l 241 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHI--FDDIATLCDRV------LLIDQGQLVFDGTL 241 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecc--hhhHHHhhhhe------EEeeCCcEeecccH
Confidence 9998877777776666666789999999999 77777777777 45566666665443
No 117
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.82 E-value=1.5e-19 Score=178.06 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=109.0
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------HHhcCCcc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-----------------LAQIGCYV 415 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-----------------~~~~g~~v 415 (628)
++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.- ...+| |+
T Consensus 5 ~v~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~-~~ 75 (223)
T TIGR03740 5 NLSKRFGKQTAVNNISLTVP--------KNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIG-SL 75 (223)
T ss_pred eEEEEECCEEEEeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEE-EE
Confidence 47788888889999999998 999999999999999999999999530 11344 55
Q ss_pred cCCCCCc---h-----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCC
Q 006859 416 PAHFSTI---R-----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRAT 474 (628)
Q Consensus 416 ~~~~~~i---~-----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt 474 (628)
|+....+ . ....++..+|+.+..+.....+|+|++++..+++++ .+|+++++|||+.|.
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 5432111 1 123445667777777788889999999887777665 789999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
|+.....+ ..++..+.+.+.+++++||+.+.
T Consensus 156 D~~~~~~l-~~~L~~~~~~~~tiii~sH~~~~ 186 (223)
T TIGR03740 156 DPIGIQEL-RELIRSFPEQGITVILSSHILSE 186 (223)
T ss_pred CHHHHHHH-HHHHHHHHHCCCEEEEEcCCHHH
Confidence 98665554 44555555568899999999654
No 118
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.2e-19 Score=178.85 Aligned_cols=152 Identities=15% Similarity=0.195 Sum_probs=111.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQI 411 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~ 411 (628)
++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. +...+
T Consensus 8 ~l~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 8 EVSYSSFGKEILKDISVKFE--------GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeCCeeeeeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 47888888889999999999 99999999999999999999999953 11234
Q ss_pred CCcccCCCCCch-------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCC
Q 006859 412 GCYVPAHFSTIR-------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDEL 470 (628)
Q Consensus 412 g~~v~~~~~~i~-------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~ 470 (628)
| |+|++...+. ....++..+++. +...+....+|+|++|+..+++++ .+|+++++|||
T Consensus 80 ~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 80 G-MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred E-EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4 5555432110 123455667775 456778889999999888877765 88999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 471 ~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++|.|+.....+ ...+..+.+ .+.+++++||+.+. +...++++
T Consensus 159 t~~LD~~~~~~l-~~~l~~~~~~~g~tii~~sH~~~~--~~~~~d~i 202 (241)
T PRK14250 159 TSALDPTSTEII-EELIVKLKNKMNLTVIWITHNMEQ--AKRIGDYT 202 (241)
T ss_pred cccCCHHHHHHH-HHHHHHHHHhCCCEEEEEeccHHH--HHHhCCEE
Confidence 999998655443 344445554 58999999999553 33334444
No 119
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.8e-19 Score=181.96 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=115.4
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------ 406 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------ 406 (628)
.|.+ .-.++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 9 ~~~l-~i~~l~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 9 DTTF-ALRNVSFRVPGRTLLHPLSLTFP--------AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS 79 (265)
T ss_pred CceE-EEeeEEEEECCEEEEeeeeeEEc--------CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC
Confidence 3433 33458899988889999999999 99999999999999999999999963
Q ss_pred ---HHHhcCCcccCCCCCc---h-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHH
Q 006859 407 ---ILAQIGCYVPAHFSTI---R-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 407 ---~~~~~g~~v~~~~~~i---~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i 455 (628)
+...+| |+|+..+.+ . ....++..+++.+.+.+....+|+|++|+..+
T Consensus 80 ~~~~~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 158 (265)
T PRK10575 80 SKAFARKVA-YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWI 158 (265)
T ss_pred HHHHhhheE-EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHH
Confidence 112355 555442110 0 12334566677777777888999999988777
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++|+|||++|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~l~~~~~~tiii~sH~~~--~i~~~~d~i 218 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDIN--MAARYCDYL 218 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 7665 8899999999999999866555433 4444544 4899999999954 443444444
No 120
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.9e-19 Score=182.94 Aligned_cols=162 Identities=17% Similarity=0.196 Sum_probs=118.8
Q ss_pred CCEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------H
Q 006859 352 GPLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------I 407 (628)
Q Consensus 352 ~~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~ 407 (628)
.++++.|++ +++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 8 KNLTFKYKEDQEKYTLNDVSFHVK--------QGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred EeEEEEcCCCCcCeeeeeeEEEEe--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 347888863 468999999999 99999999999999999999999953 2
Q ss_pred HHhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 408 LAQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 408 ~~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
...+| |+++... .+ . ....++..+|+.+..++....+|+|++|+..+++++ .+
T Consensus 80 ~~~i~-~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 80 RHKIG-MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred Hhhce-EEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 23456 6665421 00 1 123456667888778888999999999888887766 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|+++++|||+.|+|+.....+. .++..+.+ .|.|++++||+.+... .++++ +.+.+|++..
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tilivtH~~~~~~---~~dri------~~l~~G~i~~ 220 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELI-KTIKGIRDDYQMTVISITHDLDEVA---LSDRV------LVMKNGQVES 220 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHH---hCCEE------EEEECCEEEE
Confidence 9999999999999986555543 44555554 5899999999965443 35544 3445666543
No 121
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.82 E-value=1.2e-19 Score=189.12 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=114.9
Q ss_pred EcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------H----HHhc
Q 006859 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------I----LAQI 411 (628)
Q Consensus 357 ~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~----~~~~ 411 (628)
.|+++++++++++++. +|++++|+||||||||||+|+|+|+. + ...+
T Consensus 2 ~~~~~~~l~~vs~~i~--------~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 2 KTGGKKGVNDADLAIA--------KGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred ccCCceeEEeeEEEEc--------CCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4677889999999999 99999999999999999999999954 1 2246
Q ss_pred CCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 412 GCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 412 g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
| |+|+..+.++ ....++..+|+.+...+.++.+|+|++|+..+++++ .+|++++
T Consensus 74 ~-~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 74 G-MVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred E-EEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6 7766543221 123456677888888899999999999988888776 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||||++++|+.....+...+.+...+.+.|++++||+.+ +....++++
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~--ea~~~~drI 200 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD--EAIRIGDRI 200 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 999999999977776555444433345899999999944 444445555
No 122
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.3e-19 Score=183.07 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=113.0
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H-------
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------- 407 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------- 407 (628)
++++.|++ +++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 7 ~l~~~~~~~~~~~~~~l~~vsl~i~--------~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 7 NVDYIYSPGTPMEKKGLDNISFELE--------EGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEcCCCCCccccceeeeEEEEe--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 47888873 479999999999 99999999999999999999999953 1
Q ss_pred -----HHhcCCcccCCCC--C--ch---------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHH
Q 006859 408 -----LAQIGCYVPAHFS--T--IR---------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 -----~~~~g~~v~~~~~--~--i~---------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~ 456 (628)
...+| |+|+... . .. .+..++..+|+. +...+..+.+|+|++|+..++
T Consensus 79 ~~~~~~~~ig-~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 79 NLKKLRKKVS-LVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred hHHHHHhceE-EEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 12355 6665421 0 01 123345556775 566788899999999988888
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++ .+|++++||||+.|+|+.....+ ..++..+.+.+.+++++||+.+ .+...++++
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l-~~~l~~l~~~g~tvlivsH~~~--~~~~~~d~v 215 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEM-MQLFKDYQKAGHTVILVTHNMD--DVAEYADDV 215 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHH--HHHHhCCEE
Confidence 776 88999999999999998665554 4455556666899999999954 444445555
No 123
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.9e-19 Score=182.51 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=118.0
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHH
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~ 409 (628)
++++.|+ ++++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (274)
T PRK13644 6 NVSYSYPDGTPALENINLVIK--------KGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77 (274)
T ss_pred EEEEEcCCCCceeeeeEEEEe--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh
Confidence 4788884 5789999999999 99999999999999999999999953 112
Q ss_pred hcCCcccCCCCC-c---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFST-I---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~~-i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
.+| |+|+.... + . .....+..+|+.+........+|+|++|+..+++++ .+|+
T Consensus 78 ~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (274)
T PRK13644 78 LVG-IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE 156 (274)
T ss_pred heE-EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 355 66554210 0 1 122345567777777888899999999988888766 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++|+|||+.|+|+..... .+.++..+.+.|.+++++||+.+... .++++ +.+.+|++.
T Consensus 157 lllLDEPt~gLD~~~~~~-l~~~l~~l~~~g~til~~tH~~~~~~---~~d~v------~~l~~G~i~ 214 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIA-VLERIKKLHEKGKTIVYITHNLEELH---DADRI------IVMDRGKIV 214 (274)
T ss_pred EEEEeCCcccCCHHHHHH-HHHHHHHHHhCCCEEEEEecCHHHHh---hCCEE------EEEECCEEE
Confidence 999999999999865554 34455555666899999999965433 35555 344556654
No 124
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.8e-19 Score=175.81 Aligned_cols=143 Identities=18% Similarity=0.307 Sum_probs=108.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIG 412 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g 412 (628)
++++.|++.++++++++++. +| +++|+||||||||||+++|+|+. +..++|
T Consensus 5 ~~~~~~~~~~~l~~vs~~i~--------~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 75 (211)
T cd03264 5 NLTKRYGKKRALDGVSLTLG--------PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIG 75 (211)
T ss_pred EEEEEECCEEEEcceeEEEc--------CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheE
Confidence 47788888889999999998 89 99999999999999999999953 123455
Q ss_pred CcccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|+|++...+ . .+..++..+++.+..+.....+|+|++|+..+++++ .+|+++++
T Consensus 76 -~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 76 -YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred -EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666553211 1 112345567777777788889999999888887666 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
|||++|.|+.....+ ..+++.+.+ +.+++++||+.+..
T Consensus 155 DEPt~~LD~~~~~~l-~~~l~~~~~-~~tii~vsH~~~~~ 192 (211)
T cd03264 155 DEPTAGLDPEERIRF-RNLLSELGE-DRIVILSTHIVEDV 192 (211)
T ss_pred cCCcccCCHHHHHHH-HHHHHHHhC-CCEEEEEcCCHHHH
Confidence 999999998655543 344555554 58999999996543
No 125
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=9.6e-20 Score=176.66 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=110.7
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIG 412 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g 412 (628)
++++.|++.++++++++++. +|++++|+||||||||||+++|+|+. +..++|
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 6 NLACERDERILFSGLSFTLN--------AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred EEEEEECCEEEEecceEEEC--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE
Confidence 47888888889999999999 99999999999999999999999953 122344
Q ss_pred CcccCCCCCc---------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCC
Q 006859 413 CYVPAHFSTI---------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDEL 470 (628)
Q Consensus 413 ~~v~~~~~~i---------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~ 470 (628)
|+++..... ..++..+..+|+.+..++..+.+|+|++|+..+++++ .+|+++++|||
T Consensus 78 -~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 78 -YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred -EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 444332110 0223456677887777888899999999888877666 88999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 471 ~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
++|.|+.....+. .++..+.+.+.+++++||+.+..+
T Consensus 157 t~~LD~~~~~~l~-~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 157 FTAIDKQGVARLE-ALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred CccCCHHHHHHHH-HHHHHHHHCCCEEEEEecChhhhc
Confidence 9999986666543 444445556889999999955443
No 126
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.82 E-value=2.2e-19 Score=161.15 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=118.2
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch----------
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR---------- 423 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~---------- 423 (628)
+.+.|+..|.= ++..+. .|++++|+||+||||||||+.|+| |..|.+|.+.
T Consensus 7 V~~~y~~~~~~--fdl~v~--------~ge~vAi~GpSGaGKSTLLnLIAG---------F~~P~~G~i~i~g~d~t~~~ 67 (231)
T COG3840 7 VRFSYGHLPMR--FDLTVP--------AGEIVAILGPSGAGKSTLLNLIAG---------FETPASGEILINGVDHTASP 67 (231)
T ss_pred eEEeeCcceEE--EEEeec--------CCcEEEEECCCCccHHHHHHHHHh---------ccCCCCceEEEcCeecCcCC
Confidence 66666655432 244566 899999999999999999999999 5554444332
Q ss_pred -----------------------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 424 -----------------------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 424 -----------------------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
.++.+..++|+.+..++-+.++|+|++|++.+++.+ .+
T Consensus 68 P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~ 147 (231)
T COG3840 68 PAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE 147 (231)
T ss_pred cccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence 345677889999999999999999999999988876 67
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeec
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKD 538 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 538 (628)
..+++||||++.++|.-......-+...-.+++.|++++||.+ .+.....+++ +.+++|++.+......
T Consensus 148 ~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~--~Da~~ia~~~------~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 148 QPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP--EDAARIADRV------VFLDNGRIAAQGSTQE 216 (231)
T ss_pred CCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH--HHHHHhhhce------EEEeCCEEEeeccHHH
Confidence 8999999999999997666544434444446899999999994 4555444544 5567888776544433
No 127
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-19 Score=179.94 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=110.3
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHH
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~ 409 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+. ...
T Consensus 9 ~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 9 DKVSAHYGKIQALHEVSLHIN--------QGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred EeEEEeeCCceeeeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 458888888889999999999 99999999999999999999999953 112
Q ss_pred hcCCcccCCCCCc---hHH-------------------HHHHhhc-CCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 410 QIGCYVPAHFSTI---RVV-------------------DRIFTRM-GTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~~~-------------------~~~~~~~-~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
++| |+|+....+ .+. ..++..+ ++.+......+.+|+|++|+..+++.+ .+|+++
T Consensus 81 ~i~-~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 81 AVA-IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred CEE-EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 355 666543211 111 1223334 344455667788999999888777665 789999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++|||+.|.|+..... ...++..+.+.+.+++++||+.+ ++.+.++++
T Consensus 160 llDEPt~~LD~~~~~~-l~~~l~~~~~~~~tiii~sH~~~--~~~~~~d~i 207 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQ-IFDTIEQLREQGMTIFLVEQNAN--QALKLADRG 207 (237)
T ss_pred EEcCccccCCHHHHHH-HHHHHHHHHHCCCEEEEEeCcHH--HHHhhCCEE
Confidence 9999999999865554 34455556666899999999943 444444544
No 128
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=2.1e-19 Score=182.49 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=119.4
Q ss_pred CCEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 352 GPLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 352 ~~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
.++++.|+. +++++++++++. +|++++|+||||||||||+++|+|+. +.
T Consensus 9 ~~l~~~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 9 EHISFRYPDAATYALKDVSFSVY--------EGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred EEEEEEeCCCCccceeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 458888864 679999999999 99999999999999999999999953 12
Q ss_pred HhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 409 AQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 409 ~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
..+| |+|++.. .+ . ....++..+|+.+...+.+..+|+|++|+..+++++ .+|
T Consensus 81 ~~i~-~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 81 RQVG-MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred hheE-EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 3455 6655421 00 1 124455667888888888999999999888887766 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+++++|||++|+|+.....+. .++..+.+ .+.|++++||+.+... .++++ +.+.+|++.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~-~~l~~l~~~~~~tilivsH~~~~~~---~~d~i------~~l~~G~i~ 219 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVL-ETVRQLKEQKGITVLSITHDLDEAA---QADRV------IVMNKGEIL 219 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHHHcCCCEEEEEecCHHHHH---cCCEE------EEEECCEEE
Confidence 999999999999987655543 44555554 4899999999966543 25555 344556554
No 129
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.81 E-value=2.9e-19 Score=176.72 Aligned_cols=152 Identities=17% Similarity=0.152 Sum_probs=109.3
Q ss_pred CEEEEcCcc----CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------
Q 006859 353 PLAIDGGRH----PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------- 406 (628)
Q Consensus 353 ~l~~~~~~~----~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------- 406 (628)
++++.|+++ ++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 6 ~v~~~~~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 6 NLSVSFPTGGGSVKALDDVSFSIK--------KGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eeeEeccCCCcceeeecCceeEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhH
Confidence 477788765 79999999999 99999999999999999999999953
Q ss_pred --HHHhcCCcccCCCC-----CchH-----------------------HHHHHhhcCCc-cccccCcCchHHHHHHHHHH
Q 006859 407 --ILAQIGCYVPAHFS-----TIRV-----------------------VDRIFTRMGTV-DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 407 --~~~~~g~~v~~~~~-----~i~~-----------------------~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i 455 (628)
+..++| |+|+... ...+ ...++..+++. .........+|+|++|+..+
T Consensus 78 ~~~~~~i~-~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 78 KIRRKEIQ-MVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI 156 (228)
T ss_pred HHhhccEE-EEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence 012355 6655431 0010 01334556664 45677788899999998888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|++++||||++|+|+.....+.. ++..+.+ .+.+++++||+.+. +...++.+
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~--~~~~~d~i 216 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILD-LLKKLQEELGLTLLFITHDLGV--VAKIADRV 216 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHH--HHHhcCeE
Confidence 8766 8899999999999999866555444 4444444 48999999999553 33334544
No 130
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.6e-19 Score=181.89 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=118.3
Q ss_pred CCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 352 GPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
.++++.|+ +.++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 7 ~~l~~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (277)
T PRK13652 7 RDLCYSYSGSKEALNNINFIAP--------RNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78 (277)
T ss_pred EEEEEEeCCCCceeeEeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 34888885 5679999999999 99999999999999999999999953 223
Q ss_pred hcCCcccCCCC----Cch---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 410 QIGCYVPAHFS----TIR---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 410 ~~g~~v~~~~~----~i~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
++| |+|++.. ... ....++..+++.+...+....+|+|++|+..+++++ .+|+
T Consensus 79 ~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 79 FVG-LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred heE-EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 466 6665421 001 123445666777778888899999999888887766 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++|+|||+.|+|+.....+. .++..+.+ .+.+++++||+.+ .+.+.++++ ..+.+|+++
T Consensus 158 llilDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tvli~tH~~~--~~~~~~drv------~~l~~G~i~ 217 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELI-DFLNDLPETYGMTVIFSTHQLD--LVPEMADYI------YVMDKGRIV 217 (277)
T ss_pred EEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHH--HHHHhCCEE------EEEECCeEE
Confidence 99999999999986655533 34444554 4899999999954 433444544 344556654
No 131
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.8e-19 Score=189.31 Aligned_cols=154 Identities=11% Similarity=0.131 Sum_probs=118.1
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIG 412 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g 412 (628)
.++++.|+..++++++++++. +|++++|+||||||||||||+|+|+. ....+|
T Consensus 23 ~~v~~~~~~~~~l~~vsl~i~--------~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 23 RNLTKSFDGQHAVDDVSLTIY--------KGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred EeEEEEECCEEEEeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 458888988889999999988 99999999999999999999999954 112355
Q ss_pred CcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|++++...++ .+..++..+++.+..++.+..+|+|++|+..+++++ .+|++++|
T Consensus 95 -~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLL 173 (377)
T PRK11607 95 -MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL 173 (377)
T ss_pred -EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5555432221 123456667888888888999999999988888776 78999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|||++++|......+...+.+...+.+.+++++||+.+ +.....+++
T Consensus 174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~--ea~~laDri 220 (377)
T PRK11607 174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE--EAMTMAGRI 220 (377)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHHhCCEE
Confidence 99999999876666555555555567899999999954 444444555
No 132
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.9e-19 Score=182.58 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=117.4
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H-------
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------- 407 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------- 407 (628)
++++.|+. +++|+++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 7 ~l~~~y~~~~~~~~~~L~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 7 KVEHRYQYKTPFERRALYDVNVSIP--------SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEECCCCcccccceeeEEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 47788864 579999999999 99999999999999999999999953 1
Q ss_pred -----HHhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHH
Q 006859 408 -----LAQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 -----~~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~ 456 (628)
...+| |+|+... .+ . .+..++..+|+. +...+.+..+|+|++|+..++
T Consensus 79 ~~~~~~~~ig-~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 79 KLKPLRKKVG-IVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred hHHHHHhhEE-EEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 12456 6666431 11 1 123345567775 456778899999999988887
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+.+ .+|+++|+|||++|+|+.....+.. ++..+.+ .|.|++++||+.+ .+...++++ +.+.+|+++.
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~-~L~~l~~~~g~tviiitHd~~--~~~~~~drv------~~l~~G~i~~ 226 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMME-MFYKLHKEKGLTTVLVTHSME--DAARYADQI------VVMHKGTVFL 226 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE------EEEECCEEEE
Confidence 766 8899999999999999866555433 4455544 5899999999955 333344544 3445666553
No 133
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.81 E-value=3.2e-19 Score=176.20 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=113.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----H--------------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----I-------------------- 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----~-------------------- 407 (628)
++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+. -
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 76 (227)
T cd03260 5 DLNVYYGDKHALKDISLDIP--------KGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDV 76 (227)
T ss_pred EEEEEcCCceeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHH
Confidence 47888888889999999999 99999999999999999999999975 1
Q ss_pred ---HHhcCCcccCCCCCc--h----------------------HHHHHHhhcCCccccccC--cCchHHHHHHHHHHHHh
Q 006859 408 ---LAQIGCYVPAHFSTI--R----------------------VVDRIFTRMGTVDNLESN--SSTFMTEMKETAFVMQN 458 (628)
Q Consensus 408 ---~~~~g~~v~~~~~~i--~----------------------~~~~~~~~~~~~~~~~~~--~s~~s~~~~~~~~i~~~ 458 (628)
..++| |+|+....+ . .....+..+|+.+..... ...+|+|++|+..+++.
T Consensus 77 ~~~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 77 LELRRRVG-MVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHhhEE-EEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 11344 566543110 0 112344556776655555 48899999998888876
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+ .+|+++++|||++|+|+.....+. .++..+.+. .+++++||+.+ .+...++++ +.+.+|+++
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~-~tii~~sH~~~--~~~~~~d~i------~~l~~G~i~ 219 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIE-ELIAELKKE-YTIVIVTHNMQ--QAARVADRT------AFLLNGRLV 219 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhhC-cEEEEEeccHH--HHHHhCCEE------EEEeCCEEE
Confidence 6 789999999999999986555543 344445554 89999999954 333334444 344555554
No 134
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.2e-19 Score=174.15 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=102.5
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+..+. ++++++. +|++++|+||||||||||+|+|+|+. ....+|
T Consensus 5 ~l~~~~~~~~~--~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~- 73 (211)
T cd03298 5 KIRFSYGEQPM--HFDLTFA--------QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS- 73 (211)
T ss_pred eEEEEeCCEec--ceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEE-
Confidence 36777765432 6677777 99999999999999999999999953 011244
Q ss_pred cccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
|+|++...+ . ....++..+++.+.....+..+|+|++|+..+++++ .+|+++++|
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 555442111 0 123345566777667778889999999888888776 789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhH
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENL 506 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l 506 (628)
||++|.|+.....+.. ++..+. +.+.+++++||+.+.
T Consensus 154 EP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sH~~~~ 191 (211)
T cd03298 154 EPFAALDPALRAEMLD-LVLDLHAETKMTVLMVTHQPED 191 (211)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHH
Confidence 9999999866665444 444444 458999999999553
No 135
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.4e-19 Score=180.30 Aligned_cols=153 Identities=12% Similarity=0.168 Sum_probs=112.7
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHh-
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQ- 410 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~- 410 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. -..+
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 9 SGLMMRFGGLLAVNNVNLEVR--------EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred eeEEEEECCEEEEEeeeeEEc--------CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 458888988899999999999 99999999999999999999999963 0011
Q ss_pred -cCCcccCCCCCc---h------------------------------------HHHHHHhhcCCccccccCcCchHHHHH
Q 006859 411 -IGCYVPAHFSTI---R------------------------------------VVDRIFTRMGTVDNLESNSSTFMTEMK 450 (628)
Q Consensus 411 -~g~~v~~~~~~i---~------------------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~ 450 (628)
++ |+|+....+ . .....+..+|+.+...+....+|+|++
T Consensus 81 ~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 81 GVV-RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred CeE-EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHH
Confidence 33 455442111 0 112234567777777888899999999
Q ss_pred HHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 451 ETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 451 ~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+..+++++ .+|+++++|||++|+|+.....+ ..++..+.+ .+.+++++||+.+ .....++++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~--~~~~~~d~i 224 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMK--LVMGISDRI 224 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 888888776 78999999999999998665554 445555555 4899999999954 444444544
No 136
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=2.3e-19 Score=175.28 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=111.3
Q ss_pred ccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------HHH
Q 006859 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------ILA 409 (628)
Q Consensus 348 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------~~~ 409 (628)
+..-.++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+. ...
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVD--------AGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEEC--------CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhh
Confidence 3344568899988889999999999 99999999999999999999999953 111
Q ss_pred hcCCcccCCCCCc---h------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 410 QIGCYVPAHFSTI---R------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
.+| |+|+..... . .....+..+++.+........+|+|++|+..+++.+ .+|+++++
T Consensus 83 ~i~-~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 83 FMA-YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred ceE-EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 245 555443211 1 112345566777667778889999999888887766 78999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
|||+.|+|+..... ...++..+.+.+.+++++||+.+
T Consensus 162 DEPt~~LD~~~~~~-l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 162 DEPYANLDLEGITL-VNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred eCCcccCCHHHHHH-HHHHHHHHHhCCCEEEEEecChh
Confidence 99999998865554 44455555566899999999954
No 137
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.81 E-value=2.2e-19 Score=178.15 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=105.0
Q ss_pred EEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCc
Q 006859 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCY 414 (628)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~ 414 (628)
...|+.+++++++++++. +|++++|+||||||||||+|+|+|+. +..++| |
T Consensus 28 ~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~ 98 (236)
T cd03267 28 KRKYREVEALKGISFTIE--------KGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG-V 98 (236)
T ss_pred hcccCCeeeeeceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEE-E
Confidence 356778889999999999 99999999999999999999999963 112455 5
Q ss_pred ccCCC-CC---ch---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 415 VPAHF-ST---IR---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 415 v~~~~-~~---i~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
+|+.. .. .. .....+..+|+.+..+.....+|+|++|+..+++++ .+|+++++|
T Consensus 99 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 178 (236)
T cd03267 99 VFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD 178 (236)
T ss_pred EcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 54321 11 10 012334556776667778889999999887777665 889999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhH
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENL 506 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l 506 (628)
||+.|+|+.....+.. ++..+.+ .+.+++++||+.+.
T Consensus 179 EPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~ 216 (236)
T cd03267 179 EPTIGLDVVAQENIRN-FLKEYNRERGTTVLLTSHYMKD 216 (236)
T ss_pred CCCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEecCHHH
Confidence 9999999866655444 4444443 47899999999653
No 138
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.7e-21 Score=192.43 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=143.9
Q ss_pred CEEEEcC----ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCC-----CCCch
Q 006859 353 PLAIDGG----RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH-----FSTIR 423 (628)
Q Consensus 353 ~l~~~~~----~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~-----~~~i~ 423 (628)
++++.|. ..++++++++++. +|++++|+|.+||||||+.+.|.| ++|.. +|++.
T Consensus 6 nL~v~f~~~~g~v~av~~vs~~i~--------~GE~lgiVGESGsGKS~~~~aim~---------llp~~~~~i~~G~i~ 68 (316)
T COG0444 6 NLSVSFPTDAGVVKAVDGVSFELK--------KGEILGIVGESGSGKSVLAKAIMG---------LLPKPNARIVGGEIL 68 (316)
T ss_pred eeEEEEecCCccEEEEeceeEEEc--------CCcEEEEEcCCCCCHHHHHHHHHh---------ccCCCCCeEeeeEEE
Confidence 3555553 3578999999999 999999999999999999999999 88732 24443
Q ss_pred HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCC-cE------
Q 006859 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK-AY------ 496 (628)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~-~~------ 496 (628)
+.++.+.. ++.. ++..+. ...==.|+-+|...+||.-.. ...+.+.+...+ ..
T Consensus 69 f~g~~l~~-------------l~~~--~~~~iR---G~~I~mIfQ~p~~sLnPv~~I--g~Qi~E~l~~h~~~~~~~ea~ 128 (316)
T COG0444 69 FDGKDLLS-------------LSEK--ELRKIR---GKEIAMIFQDPMTSLNPVMTI--GDQIAEVLRLHGKGLSKKEAK 128 (316)
T ss_pred ECCccccc-------------CCHH--HHHhhc---CceEEEEEcCchhhcCChhhH--HHHHHHHHHHhhcchhhHHHH
Confidence 33332211 1211 111110 111123445555555553221 222333332110 00
Q ss_pred --EEE---EcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH
Q 006859 497 --TIF---ASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS 566 (628)
Q Consensus 497 --vi~---~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~ 566 (628)
++- .-...+-....+.|| ++||+|+.||+.+|+++|. ++|+|+..+|...+
T Consensus 129 ~~a~~~L~~Vgi~~~~~~~~~YP-------------------helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~Q 189 (316)
T COG0444 129 ERAIELLELVGIPDPERRLKSYP-------------------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189 (316)
T ss_pred HHHHHHHHHcCCCCHHHHHhhCC-------------------cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence 000 001112233455666 9999999999999999988 89999999998766
Q ss_pred --HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHH-HHHHHHHHHHhccC
Q 006859 567 --ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIR-HALQNLKESFIDGR 627 (628)
Q Consensus 567 --~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~-~~l~~~~~~~~~~~ 627 (628)
+++.|++-..+...+++++|||+..+.++||||.||..|++.+.+.. +.+.+++|+||+.+
T Consensus 190 aqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHH
Confidence 55555544444445899999999999999999999999999887665 45888999999865
No 139
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.8e-19 Score=188.45 Aligned_cols=155 Identities=15% Similarity=0.177 Sum_probs=125.5
Q ss_pred ccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch----
Q 006859 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR---- 423 (628)
Q Consensus 348 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~---- 423 (628)
+.+-.++++.||..++|+++++++. +|++++++|.||||||||+|+|+| .+++++|++.
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~--------~GEV~aL~GeNGAGKSTLmKiLsG---------v~~p~~G~I~~~G~ 70 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVR--------PGEVHALLGENGAGKSTLMKILSG---------VYPPDSGEILIDGK 70 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEe--------CceEEEEecCCCCCHHHHHHHHhC---------cccCCCceEEECCE
Confidence 3344569999999999999999999 999999999999999999999999 4444443322
Q ss_pred ------------------------------------------------------HHHHHHhhcCCccccccCcCchHHHH
Q 006859 424 ------------------------------------------------------VVDRIFTRMGTVDNLESNSSTFMTEM 449 (628)
Q Consensus 424 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~ 449 (628)
....++.+++.....+..+++++.++
T Consensus 71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~Lsiaq 150 (500)
T COG1129 71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQ 150 (500)
T ss_pred EccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHH
Confidence 23456677777555788899999999
Q ss_pred HHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEE
Q 006859 450 KETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFY 522 (628)
Q Consensus 450 ~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~ 522 (628)
+|+..|++++ .++.++||||||+.++..+...+. .+++.|.+.|..++++||. |.++...++++..+.-+
T Consensus 151 rQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf-~~ir~Lk~~Gv~ii~ISHr--l~Ei~~i~DritVlRDG 221 (500)
T COG1129 151 RQMVEIARALSFDARVLILDEPTAALTVKETERLF-DLIRRLKAQGVAIIYISHR--LDEVFEIADRITVLRDG 221 (500)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEcCc--HHHHHHhcCEEEEEeCC
Confidence 9999999988 567899999998888887766644 4778888999999999998 77777777777665543
No 140
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3e-19 Score=179.47 Aligned_cols=152 Identities=15% Similarity=0.228 Sum_probs=112.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQI 411 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~ 411 (628)
+++++|+.+++++++++++. +|++++|+||||||||||+++|+|+. +...+
T Consensus 7 ~l~~~~~~~~il~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 7 NLTVGYGTKRILNDLSLSLP--------TGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred eEEEEECCEEEEeeeeeEEc--------CCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 48888988899999999999 99999999999999999999999953 11235
Q ss_pred CCcccCCCCCc---h-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 412 GCYVPAHFSTI---R-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 412 g~~v~~~~~~i---~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
| |+|++.... . .....+..+|+.+........+|+|++|...+++++ .+|
T Consensus 79 ~-~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 79 A-LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred E-EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 5 666543110 1 112334556776667788889999999887777766 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++++|||+.|.|+.....+.. ++..+.+.+.+++++||+.+ .+...++.+
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~-~l~~l~~~~~tiii~tH~~~--~~~~~~d~i 208 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMR-LMRELNTQGKTVVTVLHDLN--QASRYCDHL 208 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEECCHH--HHHHhcCEE
Confidence 9999999999999865555433 44445556899999999954 433444444
No 141
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=2.3e-21 Score=188.29 Aligned_cols=209 Identities=14% Similarity=0.137 Sum_probs=157.6
Q ss_pred cceeecccccc-cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchH-
Q 006859 369 NDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFM- 446 (628)
Q Consensus 369 ~~~~~~~~~l~-~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s- 446 (628)
..+-.+|++|+ +.|++++|.|-+|||||||+|++.+ .+++..|++.+-+..+..+...+ +.
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr---------Liept~G~ilv~g~di~~~~~~~--------Lr~ 102 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR---------LIEPTRGEILVDGKDIAKLSAAE--------LRE 102 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc---------cCCCCCceEEECCcchhcCCHHH--------HHH
Confidence 34555666666 5899999999999999999999999 99999999988777666555322 11
Q ss_pred HHHHHHHHHHHhC-CCCcEEEEeCCCCCCChH--HHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEE
Q 006859 447 TEMKETAFVMQNV-SERSLIVMDELGRATSSS--DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYV 523 (628)
Q Consensus 447 ~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~--~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~ 523 (628)
-..++++.++|.. --|...++|+.+.|+... ..........+.+. ..+|..+.+.||
T Consensus 103 ~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~-----------~VgL~~~~~~yp--------- 162 (386)
T COG4175 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALE-----------LVGLEGYADKYP--------- 162 (386)
T ss_pred HHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHH-----------HcCchhhhhcCc---------
Confidence 1234577888776 457777888887766421 11111112223222 245788888999
Q ss_pred EEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--H---HHHHHHhhhhhhhhhHHHHHHHHHHH
Q 006859 524 VIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--I---TSRITKKEVKRMEINCLQYKQIQMLY 593 (628)
Q Consensus 524 ~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~---~~~l~~~~~~~~~~~~~~~h~~~~~~ 593 (628)
.+||+|++|++.+|+++|. ++|+|-+.+|+--+ + +-+|.++.++ |++++|||+++++
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K---TIvFitHDLdEAl 229 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK---TIVFITHDLDEAL 229 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC---eEEEEecCHHHHH
Confidence 9999999999999999998 88999999998755 2 2334444444 9999999999999
Q ss_pred HHHHHHHhhhccCCCHHHHHHH-HHHHHHHHhccC
Q 006859 594 HAAQRLICLKYSNQDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 594 ~~~~~~~~l~~g~~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
++.|||..|++|++...|++++ +.++.+.|+..+
T Consensus 230 riG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 230 RIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred hccceEEEecCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 9999999999999999888776 777888887654
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.5e-19 Score=179.93 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=113.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+. +...
T Consensus 11 ~~l~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 11 EQLTLGYGKYTVAENLTVEIP--------DGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred EEEEEEECCEEEeeecceEEC--------CCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 348888888889999999999 99999999999999999999999953 1123
Q ss_pred cCCcccCCCCCc---h-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTI---R-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i---~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+| |+|++...+ . ....++..+++.+...+..+.+|+|++|+..+++++ .+
T Consensus 83 i~-~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 83 IG-LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred eE-EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 55 555542110 0 123345566777777888899999999888887766 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+++++|||+.|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tiii~tH~~~--~~~~~~d~i 214 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLE-LLSELNREKGYTLAAVLHDLN--QACRYASHL 214 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 99999999999999866665444 4444544 5899999999954 444444444
No 143
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.81 E-value=1.3e-19 Score=173.89 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=104.6
Q ss_pred CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------HHHhcCCcc
Q 006859 359 GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------------ILAQIGCYV 415 (628)
Q Consensus 359 ~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------------~~~~~g~~v 415 (628)
+++++++++++++. +|++++|+||||||||||+++|+|+. +...+| |+
T Consensus 3 ~~~~il~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~-~~ 73 (190)
T TIGR01166 3 GGPEVLKGLNFAAE--------RGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG-LV 73 (190)
T ss_pred CccceecceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEE-EE
Confidence 55678999999999 99999999999999999999999953 112355 66
Q ss_pred cCCCC--Cc--h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeC
Q 006859 416 PAHFS--TI--R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDE 469 (628)
Q Consensus 416 ~~~~~--~i--~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE 469 (628)
|+... .. . .+..++..+++.+..++..+.+|+|++|+..+++++ .+|+++++||
T Consensus 74 ~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 74 FQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 65531 00 0 123345667777777888899999999888887766 7899999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 470 ~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
|++|+|+.....+. .++..+.+.+.+++++||+.+
T Consensus 154 Pt~~LD~~~~~~~~-~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQML-AILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHcCCEEEEEeeccc
Confidence 99999986655543 345555556899999999964
No 144
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.6e-19 Score=178.02 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=109.2
Q ss_pred cCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH---------------------
Q 006859 349 TENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI--------------------- 407 (628)
Q Consensus 349 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~--------------------- 407 (628)
....+++++|+.+++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 7 l~~~~l~~~~~~~~il~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 7 MEARGLSFFYGDFQALHDISLEFE--------QNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred EEEeeeEEEECCeeeecceeEEEe--------CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 344568999988889999999999 999999999999999999999999621
Q ss_pred -------HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCCcc----ccccCcCchHHHHHHH
Q 006859 408 -------LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTVD----NLESNSSTFMTEMKET 452 (628)
Q Consensus 408 -------~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~~----~~~~~~s~~s~~~~~~ 452 (628)
...+| |+|+....+ .+. ...+..+++.+ ...+....+|+|++|+
T Consensus 79 ~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVG-MVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEE-EEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 12344 565543211 111 11223344422 2455678899999998
Q ss_pred HHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 453 AFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 453 ~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
..+++++ .+|+++++|||++|+|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tvii~tH~~~--~~~~~~d~v 218 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEE-LIHELKA-RYTIIIVTHNMQ--QAARVSDVT 218 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc-CCeEEEEEecHH--HHHHhCCEE
Confidence 8888776 7899999999999999866555433 4444444 789999999954 343444544
No 145
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.81 E-value=1.9e-19 Score=177.26 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=110.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
.++++.|++.++++++++++. +|++++|+||||||||||+++|+|+. +...
T Consensus 11 ~~l~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 11 QNVGYLAGDAKILNNISFSLR--------AGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred eccEEeeCCceeeeccEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 458888988889999999999 99999999999999999999999954 1123
Q ss_pred cCCcccCCCCCc---------------------hHHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 411 IGCYVPAHFSTI---------------------RVVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 411 ~g~~v~~~~~~i---------------------~~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
+| |+|+....+ .....++..+++. .........+|+|++|+..+++.+ .+|+++++
T Consensus 83 i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (225)
T PRK10247 83 VS-YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161 (225)
T ss_pred cE-EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44 555543211 0123456667775 356778889999999887777665 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHH
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSE 508 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~ 508 (628)
|||++|+|+.....+.. ++..+. +.+.+++++||+.+...
T Consensus 162 DEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 162 DEITSALDESNKHNVNE-IIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred eCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECChHHHH
Confidence 99999999865554433 444444 45899999999976543
No 146
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=4.1e-19 Score=173.72 Aligned_cols=141 Identities=17% Similarity=0.190 Sum_probs=105.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------- 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------- 407 (628)
.++++|+++.+ ++++++. + ++++|+||||||||||+++|+|+.-
T Consensus 5 ~l~~~~~~~~~--~vsl~i~--------~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLN--------E-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCCeee--CceEEEc--------c-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhH
Confidence 38899999876 8888888 9 9999999999999999999999530
Q ss_pred HHhcCCcccCCCCCc---h-------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 408 LAQIGCYVPAHFSTI---R-------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i---~-------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
...+| |+|+....+ . ....++..+|+.+......+.+|+|++|+..+++.+ .+|++
T Consensus 74 ~~~i~-~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 74 QRKIG-LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred hhcEE-EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 11345 665543211 0 123345667777777788899999999887777665 88999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhH
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENL 506 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l 506 (628)
+++|||++|+|+.....+.. ++..+.+ .+.+++++||+.+.
T Consensus 153 lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~~ 194 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLP-ELKQIKKNLNIPVIFVTHDLSE 194 (214)
T ss_pred EEEcCCcccCCHHHHHHHHH-HHHHHHHHcCcEEEEEecCHHH
Confidence 99999999999866555443 4444544 48999999999543
No 147
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.81 E-value=4.1e-19 Score=178.22 Aligned_cols=161 Identities=16% Similarity=0.194 Sum_probs=116.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------------ 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------------ 407 (628)
++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 76 (252)
T TIGR03005 5 DVTKRFGILTVLDGLNFSVA--------AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVP 76 (252)
T ss_pred EEEEEeCCeeEEeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccc
Confidence 47888887889999999999 99999999999999999999999953 1
Q ss_pred ---------HHhcCCcccCCCCCch-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHH
Q 006859 408 ---------LAQIGCYVPAHFSTIR-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETA 453 (628)
Q Consensus 408 ---------~~~~g~~v~~~~~~i~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~ 453 (628)
...+| |+|+....++ .....+..+|+.+...+....+|+|++|+.
T Consensus 77 ~~~~~~~~~~~~i~-~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 155 (252)
T TIGR03005 77 ADEKHLRQMRNKIG-MVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRV 155 (252)
T ss_pred cchhHHHHHhhCeE-EEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHH
Confidence 11344 5555432110 112345566777777778889999999888
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
.+++++ .+|+++++|||+.|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++ +.+++|+++
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~--~~~~~~d~i------~~l~~G~i~ 226 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLN-VIRRLASEHDLTMLLVTHEMG--FAREFADRV------CFFDKGRIV 226 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHH--HHHHhcCEE------EEEECCEEE
Confidence 887766 7899999999999999865555443 4444444 5899999999954 333334444 344555554
No 148
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.7e-19 Score=187.56 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=109.2
Q ss_pred EEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------H----HHh
Q 006859 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------I----LAQ 410 (628)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~----~~~ 410 (628)
..|+..++++++++++. +|++++|+||||||||||+|+|+|+. + ..+
T Consensus 36 ~~~~~~~~L~~isl~i~--------~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 36 EKTGLSLGVKDASLAIE--------EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred hhcCCeEEEEeEEEEEc--------CCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 33444456777777777 99999999999999999999999954 0 124
Q ss_pred cCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 411 IGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 411 ~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
+| |+|+....++ .....+..+|+.+...+.++.+|+|++|+..+++++ .+|+++
T Consensus 108 ig-yv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iL 186 (400)
T PRK10070 108 IA-MVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDIL 186 (400)
T ss_pred EE-EEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 66 7766543211 122356677888888888999999999988888766 889999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|||||++|+|+.....+.. ++..+. +.++|++++||+.+ +....++++
T Consensus 187 LLDEPts~LD~~~r~~l~~-~L~~l~~~~g~TIIivTHd~~--~~~~~~Dri 235 (400)
T PRK10070 187 LMDEAFSALDPLIRTEMQD-ELVKLQAKHQRTIVFISHDLD--EAMRIGDRI 235 (400)
T ss_pred EEECCCccCCHHHHHHHHH-HHHHHHHHCCCeEEEEECCHH--HHHHhCCEE
Confidence 9999999999876666444 344444 46899999999954 444444555
No 149
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=5.1e-19 Score=175.21 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=112.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
+++++|+.+++++++++++. +|++++|+||||||||||+++|+|+. ....+|
T Consensus 5 ~l~~~~~~~~il~~i~~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~- 75 (232)
T cd03300 5 NVSKFYGGFVALDGVSLDIK--------EGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN- 75 (232)
T ss_pred eEEEEeCCeeeeccceEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceE-
Confidence 47888888889999999999 99999999999999999999999953 112344
Q ss_pred cccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
++|++...+ . ....++..+|+.+.+.+....+|+|++|...+++++ .+|+++++|
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 555443211 0 122445667887778888899999999877777665 889999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||+.|+|+.....+ ..++..+.+ .+.+++++||+.+ .+...++++
T Consensus 156 EP~~gLD~~~~~~l-~~~l~~~~~~~~~tiii~sh~~~--~~~~~~d~i 201 (232)
T cd03300 156 EPLGALDLKLRKDM-QLELKRLQKELGITFVFVTHDQE--EALTMSDRI 201 (232)
T ss_pred CCcccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHH--HHHHhcCEE
Confidence 99999998665554 344445554 4899999999954 333334444
No 150
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.81 E-value=9.9e-20 Score=170.71 Aligned_cols=129 Identities=11% Similarity=0.022 Sum_probs=97.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~ 432 (628)
++++.|++.+++.+. +++. +|++++|+||||||||||+|+|+| ++++++|.+.+.+.. +
T Consensus 5 ~l~~~~~~~~~l~~~-~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G---------l~~p~~G~i~~~g~~---i 63 (177)
T cd03222 5 DCVKRYGVFFLLVEL-GVVK--------EGEVIGIVGPNGTGKTTAVKILAG---------QLIPNGDNDEWDGIT---P 63 (177)
T ss_pred CeEEEECCEEEEccC-cEEC--------CCCEEEEECCCCChHHHHHHHHHc---------CCCCCCcEEEECCEE---E
Confidence 488899988888874 6777 999999999999999999999999 999999988654321 1
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHH
Q 006859 433 GTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLS 507 (628)
Q Consensus 433 ~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~ 507 (628)
+. ..+.. .+|+|++|+..+++.+ .+|+++++|||++|+|+.....+.. .+..+.+. +.+++++||+.+..
T Consensus 64 ~~---~~q~~-~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 64 VY---KPQYI-DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAAR-AIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred EE---EcccC-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHcCCCEEEEEECCHHHH
Confidence 10 00111 1899999888887766 7899999999999999866655444 33444444 48999999995543
No 151
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.6e-19 Score=180.19 Aligned_cols=161 Identities=17% Similarity=0.240 Sum_probs=117.0
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------- 406 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------- 406 (628)
++++.|+. +++|+++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 7 ~l~~~y~~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 7 NVSYTYQKGTPYEHQAIHDVNTEFE--------QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEECCCCccccCceeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 47788853 469999999999 99999999999999999999999953
Q ss_pred ----HHHhcCCcccCCCC--Cc--h---------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHH
Q 006859 407 ----ILAQIGCYVPAHFS--TI--R---------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 407 ----~~~~~g~~v~~~~~--~i--~---------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~ 456 (628)
+...+| |+|+... .+ . .+..++..+|+. +........+|+|++|+..++
T Consensus 79 ~~~~~~~~ig-~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 79 YIRPVRKRIG-MVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred hHHHHHhheE-EEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 123567 7776531 11 1 123445567775 556778899999999988888
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+++ .+|+++++|||++|+|+.....+ ..++..+.+ .+.|++++||+.+. +...++++ +.+.+|+++
T Consensus 158 raL~~~p~illlDEPt~~LD~~~~~~l-~~~l~~l~~~~g~tvl~vtH~~~~--~~~~~dri------~~l~~G~i~ 225 (286)
T PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQV-MRLLKSLQTDENKTIILVSHDMNE--VARYADEV------IVMKEGSIV 225 (286)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHH-HHHHHHHHHhCCCEEEEEecCHHH--HHHhCCEE------EEEECCEEE
Confidence 776 88999999999999998665553 345555554 58999999999553 33334444 344555554
No 152
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=5.1e-19 Score=181.42 Aligned_cols=162 Identities=11% Similarity=0.140 Sum_probs=117.8
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------H------------
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------I------------ 407 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~------------ 407 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 7 ~l~~~y~~~~~~~~~~l~~vsl~i~--------~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 7 NIVKIFNKKLPTELKALDNVSVEIN--------QGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEECCCCCccccceeeeEEEEe--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccc
Confidence 47777754 368999999999 99999999999999999999999953 0
Q ss_pred -------------------------HHhcCCcccCCC-CC-c--h---------------------HHHHHHhhcCCc-c
Q 006859 408 -------------------------LAQIGCYVPAHF-ST-I--R---------------------VVDRIFTRMGTV-D 436 (628)
Q Consensus 408 -------------------------~~~~g~~v~~~~-~~-i--~---------------------~~~~~~~~~~~~-~ 436 (628)
...+| |+|+.. .. + . .....+..+|+. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVG-VVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES 157 (305)
T ss_pred cccccccccccccccccccchHHHHHhceE-EEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence 11256 666642 11 0 0 123456677885 5
Q ss_pred ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcc
Q 006859 437 NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPN 515 (628)
Q Consensus 437 ~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~ 515 (628)
...+.+..+|+|++|+..+++.+ ..|+++|+|||++|+|+..... ...++..+.+.|.+++++||+.+ .+...+++
T Consensus 158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~-l~~~l~~l~~~g~tiiivtHd~~--~~~~~adr 234 (305)
T PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKE-ILEIFDNLNKQGKTIILVTHDLD--NVLEWTKR 234 (305)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEeeCHH--HHHHhCCE
Confidence 67888999999999988888776 7899999999999999865444 34455556666899999999954 33344454
Q ss_pred eeEEEEEEEEeCCeeeE
Q 006859 516 VKILHFYVVIRNNRLDF 532 (628)
Q Consensus 516 v~~~~~~~~~~~~~~~~ 532 (628)
+ +.+.+|+++.
T Consensus 235 v------~vl~~G~i~~ 245 (305)
T PRK13651 235 T------IFFKDGKIIK 245 (305)
T ss_pred E------EEEECCEEEE
Confidence 4 3445666543
No 153
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=2.9e-19 Score=172.87 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=108.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIG 412 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g 412 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. +..++|
T Consensus 5 ~l~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (201)
T cd03231 5 ELTCERDGRALFSGLSFTLA--------AGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLL 76 (201)
T ss_pred EEEEEeCCceeeccceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheE
Confidence 47888888889999999999 99999999999999999999999953 122455
Q ss_pred CcccCCCCCc------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Q 006859 413 CYVPAHFSTI------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRA 473 (628)
Q Consensus 413 ~~v~~~~~~i------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~g 473 (628)
|+|+..... .....++..+++.+...+....+|+|++|+..+++.+ .+|+++++|||++|
T Consensus 77 -~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 77 -YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred -EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 555432111 1234456667777777778889999999888887766 78999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 474 t~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
.|+.....+.. ++..+.+.+.+++++||+.
T Consensus 156 LD~~~~~~l~~-~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 156 LDKAGVARFAE-AMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred CCHHHHHHHHH-HHHHHHhCCCEEEEEecCc
Confidence 99866555443 4444555689999999984
No 154
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.9e-19 Score=179.67 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=117.9
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------HH
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------------IL 408 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------------~~ 408 (628)
++++.|+ .+++++++++++. +|++++|+||||||||||+|+|+|+. +.
T Consensus 6 ~l~~~~~~~~~~l~~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (275)
T PRK13639 6 DLKYSYPDGTEALKGINFKAE--------KGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77 (275)
T ss_pred EEEEEeCCCCeeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHH
Confidence 4788886 5679999999999 99999999999999999999999953 12
Q ss_pred HhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 409 AQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 409 ~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
..+| |+|++.. .+ . ....++..+++.+...+....+|+|++|+..+++.+ .+|
T Consensus 78 ~~i~-~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p 156 (275)
T PRK13639 78 KTVG-IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156 (275)
T ss_pred hheE-EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3456 6766531 10 1 122345667777777788899999999888887766 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+++++|||++|.|+.....+.. ++..+.+.+.+++++||+.+ .....++++ ..+.+|++.
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~~til~vtH~~~--~~~~~~d~i------~~l~~G~i~ 216 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMK-LLYDLNKEGITIIISTHDVD--LVPVYADKV------YVMSDGKII 216 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHH--HHHHhCCEE------EEEECCEEE
Confidence 9999999999999876665444 44445555899999999954 444444544 334455554
No 155
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.81 E-value=3.9e-19 Score=178.77 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=112.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQI 411 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~ 411 (628)
++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. +...+
T Consensus 6 ~l~~~~~~~~il~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (256)
T TIGR03873 6 RVSWSAGGRLIVDGVDVTAP--------PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRV 77 (256)
T ss_pred eEEEEECCEEEEeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhhe
Confidence 47888888899999999999 99999999999999999999999953 12235
Q ss_pred CCcccCCCCC---ch-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 412 GCYVPAHFST---IR-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 412 g~~v~~~~~~---i~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
| |+|+.... .. .....+..+++.+...+....+|+|++|+..+++++ .+|
T Consensus 78 ~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 78 A-LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred E-EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 5 66654310 00 122345566777777788889999999888877766 789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++++|||++|.|+.....+ ..++..+.+.+.+++++||+++ .+...++++
T Consensus 157 ~llllDEPt~~LD~~~~~~l-~~~l~~~~~~~~tiii~sH~~~--~~~~~~d~i 207 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLET-LALVRELAATGVTVVAALHDLN--LAASYCDHV 207 (256)
T ss_pred CEEEEcCccccCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 99999999999998655543 3455555556899999999955 333334444
No 156
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=2.1e-19 Score=173.70 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=111.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIG 412 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g 412 (628)
++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+. +..++|
T Consensus 6 ~l~~~~~~~~il~~~s~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~ 77 (200)
T PRK13540 6 ELDFDYHDQPLLQQISFHLP--------AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC 77 (200)
T ss_pred EEEEEeCCeeEEeeeeEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE
Confidence 47888888889999999999 99999999999999999999999953 234566
Q ss_pred CcccCCCCCc---h----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 413 CYVPAHFSTI---R----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 413 ~~v~~~~~~i---~----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
|+|+..... . ....++..+++.+..+.....+|+|++++..+++++ .+|+++++|||+.
T Consensus 78 -~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 78 -FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred -EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 665432111 1 123455666776666777788999999877777665 8899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
|.|+.....+.. ++..+.+.+.+++++||+.+..+-+
T Consensus 157 ~LD~~~~~~l~~-~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 157 ALDELSLLTIIT-KIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred ccCHHHHHHHHH-HHHHHHHcCCEEEEEeCCchhcccc
Confidence 998866555443 4444555689999999997665443
No 157
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=4.5e-19 Score=179.53 Aligned_cols=163 Identities=14% Similarity=0.106 Sum_probs=118.4
Q ss_pred CCCEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------H
Q 006859 351 NGPLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------I 407 (628)
Q Consensus 351 ~~~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~ 407 (628)
-.++++.|+. +++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~--------~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIP--------KGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 3458888865 468999999999 99999999999999999999999953 2
Q ss_pred HHhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 408 LAQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 408 ~~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
..++| |+|+... .+ . .+..++..+++.+........+|+|++|+..+++++ .+
T Consensus 82 ~~~i~-~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 160 (269)
T PRK13648 82 RKHIG-IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN 160 (269)
T ss_pred Hhhee-EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 23456 6665431 00 0 122345667777777888889999999888777766 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|+++|+|||++|+|+.....+.. ++..+.+ .+.+++++||+.+... . ++++ +.+.+|++..
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~~~tiiivtH~~~~~~--~-~d~i------~~l~~G~i~~ 222 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLD-LVRKVKSEHNITIISITHDLSEAM--E-ADHV------IVMNKGTVYK 222 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCchHHh--c-CCEE------EEEECCEEEE
Confidence 99999999999999876665444 4444444 4899999999965443 2 4544 3445666553
No 158
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.1e-19 Score=175.91 Aligned_cols=144 Identities=16% Similarity=0.204 Sum_probs=109.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------------ 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------------ 407 (628)
++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 7 ~l~~~~~~~~il~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 7 GINCFYGAHQALFDITLDCP--------QGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred eeEEEECCeeeEeeeeeEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 47888888889999999999 99999999999999999999999953 1
Q ss_pred --HHhcCCcccCCCCCc---hH----------------------HHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 408 --LAQIGCYVPAHFSTI---RV----------------------VDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 408 --~~~~g~~v~~~~~~i---~~----------------------~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
..++| |+|+....+ .+ ....+..+|+.+...+....+|+|++|+..+++++
T Consensus 79 ~~~~~i~-~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 79 ELRRNVG-MVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHHhheE-EEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 12355 666543211 11 12234566777777788889999999888887776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
.+|+++++|||+.|.|+..... ...++..+.+.+.+++++||+.+.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~-l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQ-IVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHH
Confidence 7899999999999999855444 334555555568999999999553
No 159
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.80 E-value=5.5e-19 Score=178.57 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=109.0
Q ss_pred CCEEEEcCc---------cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------
Q 006859 352 GPLAIDGGR---------HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------- 406 (628)
Q Consensus 352 ~~l~~~~~~---------~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------- 406 (628)
.++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 8 RNLSKTFRYRTGWFRRQTVEAVKPLSFTLR--------EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF 79 (267)
T ss_pred eceEEEecCCCCcccccccceeeeeeEEec--------CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC
Confidence 347777752 479999999999 99999999999999999999999954
Q ss_pred ----H-HHhcCCcccCCCC-----Cch----------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHH
Q 006859 407 ----I-LAQIGCYVPAHFS-----TIR----------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETA 453 (628)
Q Consensus 407 ----~-~~~~g~~v~~~~~-----~i~----------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~ 453 (628)
. ...+| |+|+... ... .....+..+++. +......+.+|+|++|+.
T Consensus 80 ~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 158 (267)
T PRK15112 80 GDYSYRSQRIR-MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158 (267)
T ss_pred CchhhHhccEE-EEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence 0 12355 6665431 000 112345566773 445666788999999888
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+++++ .+|+++|||||++|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tviivsH~~~--~~~~~~d~i 220 (267)
T PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLIN-LMLELQEKQGISYIYVTQHLG--MMKHISDQV 220 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHHcCcEEEEEeCCHH--HHHHhcCEE
Confidence 887665 8899999999999999865554333 4444444 5899999999954 444444544
No 160
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.80 E-value=6.6e-19 Score=176.84 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=111.5
Q ss_pred ccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH-----------------
Q 006859 346 PHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL----------------- 408 (628)
Q Consensus 346 p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~----------------- 408 (628)
|....-.++++.| ++++++++++++. +|++++|+||||||||||+++|+|+.--
T Consensus 2 ~~~l~~~~l~~~~-~~~il~~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 2 PQQIELRNIALQA-AQPLVHGVSLTLQ--------RGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred CcEEEEeCeEEEe-ccceecceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc
Confidence 3444445688888 5789999999999 9999999999999999999999996311
Q ss_pred ------HhcCCcccCCCCC-c----h-------------------HHHHHHhhcCCcc---ccccCcCchHHHHHHHHHH
Q 006859 409 ------AQIGCYVPAHFST-I----R-------------------VVDRIFTRMGTVD---NLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 409 ------~~~g~~v~~~~~~-i----~-------------------~~~~~~~~~~~~~---~~~~~~s~~s~~~~~~~~i 455 (628)
..+| |+|++... + . .....+..+++.+ .+......+|+|++|+..+
T Consensus 73 ~~~~~~~~i~-~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 73 PCALRGRKIA-TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred ccccccceEE-EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHH
Confidence 1244 55554310 0 0 1122344556654 3567778899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++|+|||++|+|+.....+. .++..+.+ .+.+++++||+.+ .+...++++
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~til~~sH~~~--~~~~~~d~v 211 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTHDMG--VVARLADDV 211 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHHHhcCcEEEEEecCHH--HHHHhCCEE
Confidence 7766 889999999999999986555533 34444543 5899999999954 443444444
No 161
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.80 E-value=3.7e-19 Score=179.56 Aligned_cols=146 Identities=19% Similarity=0.235 Sum_probs=110.7
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------------- 407 (628)
-.++++.|+++++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 7 ~~nl~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 7 VEKLAKTFNQHQALHAVDLNIH--------HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EeeEEEEeCCeEEEecceEEEc--------CCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 3458899988899999999999 999999999999999999999999641
Q ss_pred ------HHhcCCcccCCCCCc---h-----------------------------HHHHHHhhcCCccccccCcCchHHHH
Q 006859 408 ------LAQIGCYVPAHFSTI---R-----------------------------VVDRIFTRMGTVDNLESNSSTFMTEM 449 (628)
Q Consensus 408 ------~~~~g~~v~~~~~~i---~-----------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~ 449 (628)
...+| |+|+....+ . ....++..+|+.+..++....+|+|+
T Consensus 79 ~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 157 (262)
T PRK09984 79 RDIRKSRANTG-YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQ 157 (262)
T ss_pred hhHHHHHhheE-EEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHH
Confidence 01244 666543211 0 12234555777777788888999999
Q ss_pred HHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhH
Q 006859 450 KETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENL 506 (628)
Q Consensus 450 ~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l 506 (628)
+|+..+++++ .+|+++++|||+.|+|......+.. ++..+. +.|.+++++||+.+.
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tvii~tH~~~~ 215 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMD-TLRDINQNDGITVVVTLHQVDY 215 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHH
Confidence 9888887765 8899999999999999866555444 444454 358999999999653
No 162
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.3e-19 Score=171.73 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=98.7
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHH-----
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDR----- 427 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~----- 427 (628)
++.+.|+..++++++++++. +|++++|+||||||||||+|+|+| ..|+.+|++.+.+.
T Consensus 5 ~l~~~~~~~~~l~~i~~~i~--------~G~~~~i~G~nGsGKSTLl~~l~G---------~~~~~~G~i~~~g~~~~~~ 67 (178)
T cd03229 5 NVSKRYGQKTVLNDVSLNIE--------AGEIVALLGPSGSGKSTLLRCIAG---------LEEPDSGSILIDGEDLTDL 67 (178)
T ss_pred EEEEEECCeEEEeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhC---------CCCCCceEEEECCEEcccc
Confidence 47788888889999999999 999999999999999999999999 77777775542211
Q ss_pred ------HHhhcCC---------ccccccCcCc-hHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 006859 428 ------IFTRMGT---------VDNLESNSST-FMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHL 490 (628)
Q Consensus 428 ------~~~~~~~---------~~~~~~~~s~-~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l 490 (628)
....++. .......... +|+|++|+..+++++ .+|+++++|||+.|.|+..... ...++..+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~-l~~~l~~~ 146 (178)
T cd03229 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE-VRALLKSL 146 (178)
T ss_pred chhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH-HHHHHHHH
Confidence 1011110 0011111222 889999877777665 8899999999999999865554 34455555
Q ss_pred HhC-CcEEEEEcCChhHH
Q 006859 491 LSL-KAYTIFASHMENLS 507 (628)
Q Consensus 491 ~~~-~~~vi~~tH~~~l~ 507 (628)
.+. +.+++++||+.+..
T Consensus 147 ~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 147 QAQLGITVVLVTHDLDEA 164 (178)
T ss_pred HHhcCCEEEEEeCCHHHH
Confidence 554 79999999996543
No 163
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.1e-19 Score=179.43 Aligned_cols=162 Identities=14% Similarity=0.193 Sum_probs=119.4
Q ss_pred CCEEEEcCc------cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------
Q 006859 352 GPLAIDGGR------HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~------~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------- 406 (628)
.+++++|++ +++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 8 ~~l~~~~~~~~~~~~~~vl~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 8 KNVSYKYESNEESTEKLALDDVNLEVK--------KGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred eeeEEEcCCCCCCCCcceeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc
Confidence 348888863 579999999999 99999999999999999999999953
Q ss_pred ---HHHhcCCcccCCCC------Cc-------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 407 ---ILAQIGCYVPAHFS------TI-------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 407 ---~~~~~g~~v~~~~~------~i-------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
+..++| |+|+... .+ .....++..+|+.+...+.+..+|+|++|+..+++.
T Consensus 80 ~~~~~~~i~-~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 80 LWDIRNKAG-MVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHHHhhheE-EEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 122455 6665431 00 012344566788888888899999999998888776
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+ ..|+++++|||+.|+|+.....+. .++..+.+ .+.+++++||+.+.. .. ++++ +.+.+|++..
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~~~g~tillvtH~~~~~--~~-~d~v------~~l~~G~i~~ 224 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVV-NTIKELNKKYGITIILITHYMEEA--VE-ADRI------IVMDSGKVVM 224 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecChHHH--hc-CCEE------EEEECCEEEE
Confidence 6 889999999999999987666644 45555544 589999999996543 33 5555 3445666543
No 164
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.80 E-value=2.5e-19 Score=172.96 Aligned_cols=142 Identities=17% Similarity=0.184 Sum_probs=108.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIG 412 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g 412 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. ...++|
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~ 76 (198)
T TIGR01189 5 NLACSRGERMLFEGLSFTLN--------AGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL 76 (198)
T ss_pred EEEEEECCEEEEeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheE
Confidence 47788888889999999999 99999999999999999999999953 113455
Q ss_pred CcccCCCCCc---h-----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 413 CYVPAHFSTI---R-----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 413 ~~v~~~~~~i---~-----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
|+|+..... . .....+..+++.+........+|+|++|+..+++++ .+|+++++|||+
T Consensus 77 -~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 77 -YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred -EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 565432111 0 123445667777777888899999999888887766 789999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
+|+|......+ ..++..+.+.+.+++++||+.
T Consensus 156 ~~LD~~~~~~l-~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 156 TALDKAGVALL-AGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred cCCCHHHHHHH-HHHHHHHHhCCCEEEEEEccc
Confidence 99998655543 444444555688999999984
No 165
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=2.2e-19 Score=168.20 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=100.5
Q ss_pred EEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC----CCchHHHHHHhh
Q 006859 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF----STIRVVDRIFTR 431 (628)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~----~~i~~~~~~~~~ 431 (628)
+.....++++++++++. +|++++|+||||||||||||++.+-.--..++...+... +.+.. .+.+.+
T Consensus 3 ~~~~~~~~l~~isl~i~--------~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q-~~~l~~ 73 (176)
T cd03238 3 VSGANVHNLQNLDVSIP--------LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ-LQFLID 73 (176)
T ss_pred ecceeeeeecceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH-HHHHHH
Confidence 34456788899999999 999999999999999999999853100000000111000 00111 346778
Q ss_pred cCCcc-ccccCcCchHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 432 MGTVD-NLESNSSTFMTEMKETAFVMQNV-SE--RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 432 ~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~--~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
+++.. ...+..+.+|+|++++..+++++ .+ |+++++|||++|+|+.....+.. .+..+.+.+.+++++||+.+..
T Consensus 74 ~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 74 VGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred cCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHH
Confidence 88875 47788899999999888777765 67 99999999999999866665444 3444455789999999997654
Q ss_pred H
Q 006859 508 E 508 (628)
Q Consensus 508 ~ 508 (628)
.
T Consensus 153 ~ 153 (176)
T cd03238 153 S 153 (176)
T ss_pred H
Confidence 3
No 166
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.5e-19 Score=179.01 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=116.7
Q ss_pred CCEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 352 GPLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 352 ~~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
.++++.|+ .+++++++++++. +|++++|+||||||||||+++|+|+. +.
T Consensus 11 ~nl~~~~~~~~~~il~~isl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 82 (271)
T PRK13632 11 ENVSFSYPNSENNALKNVSFEIN--------EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIR 82 (271)
T ss_pred EeEEEEcCCCCccceeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHh
Confidence 45888884 5689999999999 99999999999999999999999963 12
Q ss_pred HhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 409 AQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 409 ~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
.++| |+|++.. .+ . .+..++..+++.+...+....+|+|++|+..+++++ .+|
T Consensus 83 ~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 83 KKIG-IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred cceE-EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2355 6665431 00 1 123345667777777888899999999888887766 789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+++++|||++|+|+.....+. .++..+.+. +.+++++||+.+... .++++ ..+.+|++.
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~---~~d~v------~~l~~G~i~ 221 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIK-KIMVDLRKTRKKTLISITHDMDEAI---LADKV------IVFSEGKLI 221 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEEechhHHh---hCCEE------EEEECCEEE
Confidence 999999999999986555533 344444444 589999999966543 34544 334555554
No 167
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.80 E-value=4.6e-19 Score=188.82 Aligned_cols=153 Identities=17% Similarity=0.140 Sum_probs=111.9
Q ss_pred cccccccCCCCEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC
Q 006859 343 YTRPHFTENGPLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF 419 (628)
Q Consensus 343 ~~~p~~~~~~~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~ 419 (628)
|.+|.+. ..++.+.++. +++|+++++++. +|++++|+|||||||||||++|+|+. |+.+
T Consensus 17 ~~~~mL~-lknL~~~~~~~~~~~IL~nVSfsI~--------~GEivgIiGpNGSGKSTLLkiLaGLl---------~P~s 78 (549)
T PRK13545 17 YNKPFDK-LKDLFFRSKDGEYHYALNNISFEVP--------EGEIVGIIGLNGSGKSTLSNLIAGVT---------MPNK 78 (549)
T ss_pred cccceeE-EEEEEEecCCCccceEEeeeEEEEe--------CCCEEEEEcCCCCCHHHHHHHHhCCC---------CCCc
Confidence 4455443 3347777776 578999999998 99999999999999999999999943 2222
Q ss_pred CCc-------------------h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 420 STI-------------------R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 420 ~~i-------------------~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
|.+ . ....++..+++.+.+.+....+|+|++|+..+++++
T Consensus 79 GeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 79 GTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISV 158 (549)
T ss_pred eEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 111 0 112345566777777888999999999888877765
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+|+++|||||++|+|+.....+.. ++..+.+.+.+++++||+++ .+...++++
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~Lle-lL~el~~~G~TIIIVSHdl~--~i~~l~DrI 213 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLD-KMNEFKEQGKTIFFISHSLS--QVKSFCTKA 213 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhCCCEEEEEECCHH--HHHHhCCEE
Confidence 8899999999999999865555443 44445566899999999954 444444544
No 168
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.80 E-value=4.2e-19 Score=195.89 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=117.7
Q ss_pred CCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 350 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
...++++.|+++++++++++++. +|++++|+||||||||||||+|+|+. ..
T Consensus 13 ~~~~l~~~~~~~~il~~vsl~i~--------~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 84 (510)
T PRK15439 13 CARSISKQYSGVEVLKGIDFTLH--------AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84 (510)
T ss_pred EEEeEEEEeCCceeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 34458999998899999999999 99999999999999999999999953 01
Q ss_pred -HhcCCcccCCCCCc---h-----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 409 -AQIGCYVPAHFSTI---R-----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 409 -~~~g~~v~~~~~~i---~-----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
..+| |+|+....+ . .....+..+++.+...+..+.+|+|++|+..+++++ .+|+++|
T Consensus 85 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lll 163 (510)
T PRK15439 85 QLGIY-LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILI 163 (510)
T ss_pred hCCEE-EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1245 666543211 0 123456677887777888999999999988888766 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCccee
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVK 517 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~ 517 (628)
+|||++|.|+.....+. .++..+.+.|.+++++||+.+. +...++++.
T Consensus 164 LDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiiivtHd~~~--~~~~~d~i~ 211 (510)
T PRK15439 164 LDEPTASLTPAETERLF-SRIRELLAQGVGIVFISHKLPE--IRQLADRIS 211 (510)
T ss_pred EECCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHHH--HHHhCCEEE
Confidence 99999999986655544 4455556668999999999543 333444443
No 169
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=3.9e-19 Score=158.97 Aligned_cols=164 Identities=16% Similarity=0.256 Sum_probs=126.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------------- 406 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------------- 406 (628)
.+..+||.|.+|++++++.. +|+++.|+|.+|||||||||+|.-+.
T Consensus 11 dlHK~~G~~eVLKGvSL~A~--------~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQAN--------AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred HHHhhcccchhhcceeeecC--------CCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 48899999999999999999 99999999999999999999999853
Q ss_pred --------HHHhcCCcccCCCCCc-------------------------hHHHHHHhhcCCccccccCcCchHHHHHHHH
Q 006859 407 --------ILAQIGCYVPAHFSTI-------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETA 453 (628)
Q Consensus 407 --------~~~~~g~~v~~~~~~i-------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~ 453 (628)
+..+.| +|++..... ......+.+.|+.+..+..+..+|+|++|++
T Consensus 83 ad~~q~~r~Rs~L~-mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 83 ADKRQLQRLRTRLG-MVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRV 161 (256)
T ss_pred CCHHHHHHHHHHhh-HhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHH
Confidence 334445 443332111 1334567889999999999999999999999
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCC
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNN 528 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~ 528 (628)
.|++++ ..|+++++|||++.+||.---. ...++..|++.|.|.+++||.+.++. +...+|.+.|-+.+...|
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgE-VLkv~~~LAeEgrTMv~VTHEM~FAR--~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGE-VLKVMQDLAEEGRTMVVVTHEMGFAR--DVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHH-HHHHHHHHHHhCCeEEEEeeehhHHH--hhhhheEEeecceecccC
Confidence 999887 7899999999977777743222 33567888899999999999966654 333566677766554443
No 170
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=7.2e-19 Score=179.45 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=116.7
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------- 406 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------- 406 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 6 ~v~~~y~~~~~~~~~~l~~vsl~i~--------~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 6 KVNYTYQPNSPFASRALFDIDLEVK--------KGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEeCCCCcccccceeeeEEEEc--------CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 47777753 268999999999 99999999999999999999999953
Q ss_pred ----HHHhcCCcccCCC--CCc--h---------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHH
Q 006859 407 ----ILAQIGCYVPAHF--STI--R---------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 407 ----~~~~~g~~v~~~~--~~i--~---------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~ 456 (628)
+...+| |+++.. ..+ . .+...+..+++. +...+....+|+|++|+..++
T Consensus 78 ~~~~~~~~ig-~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 78 EIKPVRKKVG-VVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred cHHHHHhhEE-EEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 122456 666543 100 1 123345556774 456778889999999988888
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+.+ .+|+++|||||+.|+|+.....+ ..++..+.+.+.|++++||+++ .+...++++ +.+.+|++.+
T Consensus 157 ~aL~~~p~illLDEPt~gLD~~~~~~l-~~~l~~l~~~g~til~vtHd~~--~~~~~~dri------~~l~~G~i~~ 224 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEM-MQLFESIHQSGQTVVLVTHLMD--DVADYADYV------YLLEKGHIIS 224 (288)
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHH-HHHHHHHHHCCCEEEEEecCHH--HHHHhCCEE------EEEECCEEEE
Confidence 776 78999999999999998655543 3455566666899999999955 333334544 4456666654
No 171
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.80 E-value=4.9e-19 Score=174.95 Aligned_cols=140 Identities=13% Similarity=0.161 Sum_probs=97.5
Q ss_pred cccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH----------------HhcCCcccCCCCCc---h--
Q 006859 365 ESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL----------------AQIGCYVPAHFSTI---R-- 423 (628)
Q Consensus 365 ~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~----------------~~~g~~v~~~~~~i---~-- 423 (628)
+++++++. +|++++|+||||||||||+|+|+|+.-- ...| ++|+....+ .
T Consensus 2 ~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-~v~q~~~l~~~~tv~ 72 (230)
T TIGR01184 2 KGVNLTIQ--------QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM-VVFQNYSLLPWLTVR 72 (230)
T ss_pred CceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhe-EEecCcccCCCCCHH
Confidence 34555565 9999999999999999999999995310 0112 444332110 0
Q ss_pred ---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHH
Q 006859 424 ---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFA 481 (628)
Q Consensus 424 ---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~ 481 (628)
.....+..+++.+...+..+.+|+|++|+..+++.+ .+|+++|+|||++|+|+.....
T Consensus 73 e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 152 (230)
T TIGR01184 73 ENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152 (230)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence 122345566777777788899999999888887766 8899999999999999866655
Q ss_pred HHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 482 IAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 482 ~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+.. ++..+. +.+.+++++||+.+ .+...++++
T Consensus 153 l~~-~l~~~~~~~~~tii~~sH~~~--~~~~~~d~v 185 (230)
T TIGR01184 153 LQE-ELMQIWEEHRVTVLMVTHDVD--EALLLSDRV 185 (230)
T ss_pred HHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhcCEE
Confidence 444 344444 35899999999954 444444544
No 172
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.80 E-value=5.2e-19 Score=177.93 Aligned_cols=162 Identities=15% Similarity=0.238 Sum_probs=117.1
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H-----------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I----------- 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~----------- 407 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 9 IDLHKRYGEHEVLKGVSLQAN--------AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred eeeEEEECCEEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 348888888889999999999 99999999999999999999999953 1
Q ss_pred ----------HHhcCCcccCCCCCc---hH----------------------HHHHHhhcCCcccc-ccCcCchHHHHHH
Q 006859 408 ----------LAQIGCYVPAHFSTI---RV----------------------VDRIFTRMGTVDNL-ESNSSTFMTEMKE 451 (628)
Q Consensus 408 ----------~~~~g~~v~~~~~~i---~~----------------------~~~~~~~~~~~~~~-~~~~s~~s~~~~~ 451 (628)
...+| |+|+....+ .+ ....+..+|+.+.. .+..+.+|+|++|
T Consensus 81 ~~~~~~~~~~~~~i~-~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 81 VADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred cccchHHHHHhhceE-EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 11245 665543211 11 12345566776654 6778899999999
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCee
Q 006859 452 TAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530 (628)
Q Consensus 452 ~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~ 530 (628)
+..+++++ .+|+++++|||+.|+|+.....+. .++..+.+.+.+++++||+.+. +...++++ +.+++|++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsH~~~~--~~~~~d~i------~~l~~G~i 230 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVL-RIMQQLAEEGKTMVVVTHEMGF--ARHVSSHV------IFLHQGKI 230 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHH--HHHhcCEE------EEEECCEE
Confidence 88888776 789999999999999986655543 3455565568999999999553 33334444 34455655
Q ss_pred e
Q 006859 531 D 531 (628)
Q Consensus 531 ~ 531 (628)
+
T Consensus 231 ~ 231 (257)
T PRK10619 231 E 231 (257)
T ss_pred E
Confidence 4
No 173
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.4e-19 Score=179.40 Aligned_cols=162 Identities=18% Similarity=0.211 Sum_probs=118.6
Q ss_pred CCEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------
Q 006859 352 GPLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------- 406 (628)
.++++.|++ +++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 9 ~~l~~~~~~~~~~~l~~v~l~i~--------~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 9 KHVSFTYPDSKKPALNDISFSIP--------RGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred EEEEEEcCCCCccceeeEEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 347888854 579999999999 99999999999999999999999963
Q ss_pred -HHHhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 407 -ILAQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 407 -~~~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
+..++| |+|++.. .+ . .+...+..+++.+...+.+..+|+|++|+..+++++
T Consensus 81 ~~~~~ig-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~ 159 (282)
T PRK13640 81 DIREKVG-IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA 159 (282)
T ss_pred HHHhheE-EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 122455 6654421 00 0 123456667887778888999999999888887766
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
.+|+++++|||+.|+|+.....+.. ++..+.+ .+.+++++||+++... .++++ +.+.+|+++.
T Consensus 160 ~~P~llllDEPt~gLD~~~~~~l~~-~l~~l~~~~g~tvli~tH~~~~~~---~~d~i------~~l~~G~i~~ 223 (282)
T PRK13640 160 VEPKIIILDESTSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEAN---MADQV------LVLDDGKLLA 223 (282)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHHHH---hCCEE------EEEECCEEEE
Confidence 8899999999999999866665444 4444544 4899999999976543 34544 3445666553
No 174
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.80 E-value=7.4e-19 Score=174.57 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=107.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. ....+|
T Consensus 5 ~l~~~~~~~~il~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~- 75 (237)
T TIGR00968 5 NISKRFGSFQALDDVNLEVP--------TGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG- 75 (237)
T ss_pred EEEEEECCeeeeeeEEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEE-
Confidence 47888887789999999999 99999999999999999999999953 112244
Q ss_pred cccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
|+|+....+. .+..++..+++.+..++....+|+|++|...+++.+ .+|+++++|
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5554431110 123456667777777788889999999887777666 789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChh
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMEN 505 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~ 505 (628)
||+.|.|......+ ..++..+.+. +++++++||+.+
T Consensus 156 EP~~~LD~~~~~~~-~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 156 EPFGALDAKVRKEL-RSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred CCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999998655543 3344445544 899999999955
No 175
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.80 E-value=6.5e-19 Score=177.90 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=110.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------- 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------- 407 (628)
++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 6 nl~~~~~~~~il~~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~ 77 (272)
T PRK13547 6 HLHVARRHRAILRDLSLRIE--------PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAID 77 (272)
T ss_pred EEEEEECCEeEEecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCC
Confidence 47888888899999999999 999999999999999999999999531
Q ss_pred ----HHhcCCcccCCCC---Cch-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFS---TIR-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~---~i~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+... ... .....+..+|+.+...+..+.+|+|++|+..+
T Consensus 78 ~~~~~~~~~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 78 APRLARLRA-VLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHHhhcE-EecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 01133 5554321 011 11233445666666677888999999998888
Q ss_pred HHhCC----------CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNVS----------ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~~----------~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++.+. +|+++++|||++|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tviiisH~~~--~~~~~~d~i 225 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLD-TVRRLARDWNLGVLAIVHDPN--LAARHADRI 225 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHH--HHHHhCCEE
Confidence 87764 899999999999999866665444 4444444 4899999999954 444444544
No 176
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.80 E-value=5.5e-19 Score=194.45 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=116.9
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
.++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+. ....
T Consensus 7 ~~l~~~~~~~~il~~vsl~i~--------~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~ 78 (490)
T PRK10938 7 SQGTFRLSDTKTLQLPSLTLN--------AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKL 78 (490)
T ss_pred EeEEEEcCCeeecccceEEEc--------CCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHH
Confidence 458899988889999999999 99999999999999999999999953 1122
Q ss_pred cCCcccCCCC-------------Cc-----------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 411 IGCYVPAHFS-------------TI-----------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 411 ~g~~v~~~~~-------------~i-----------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
+| ++|+... .+ ..+...+..+|+.+...+.++++|+|++|+..+++++ .+|+++
T Consensus 79 i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (490)
T PRK10938 79 VS-DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLL 157 (490)
T ss_pred hc-eeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 45 5554311 00 0234556778888778889999999999988888776 789999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCccee
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVK 517 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~ 517 (628)
++|||++|+|+.....+. .++..+.+.|.+++++||+. ..+.+.++++.
T Consensus 158 lLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tvii~tH~~--~~~~~~~d~v~ 206 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLA-ELLASLHQSGITLVLVLNRF--DEIPDFVQFAG 206 (490)
T ss_pred EEcCCcccCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCH--HHHHhhCCEEE
Confidence 999999999986655543 45555566689999999994 44444455553
No 177
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.80 E-value=8.2e-19 Score=175.00 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=111.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH-Hh
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL-AQ 410 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~-~~ 410 (628)
++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+. .. ..
T Consensus 7 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 7 GLSVSFDGFKALNDLSLYVD--------PGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eeEEEcCCeEEeeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 47888887789999999999 99999999999999999999999953 01 12
Q ss_pred cCCcccCCCCCc---h-----------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 411 IGCYVPAHFSTI---R-----------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 411 ~g~~v~~~~~~i---~-----------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
+| |+|+....+ . ....++..+|+.+......+.+|+|++|+..++++
T Consensus 79 i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 79 IG-RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred ee-EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 44 555432111 0 12334566777777778889999999988888776
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+ .+|+++++|||++|.|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~--~~~~~~d~i 212 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTA-ELLKSLAG-KHSVVVVEHDME--FVRSIADKV 212 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHH-HHHHHHhc-CCEEEEEECCHH--HHHHhCCEE
Confidence 6 789999999999999986655543 34444444 689999999954 343444544
No 178
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=9.1e-19 Score=179.12 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=113.5
Q ss_pred CEEEEcCcc-----CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H-------
Q 006859 353 PLAIDGGRH-----PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------- 407 (628)
Q Consensus 353 ~l~~~~~~~-----~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------- 407 (628)
++++.|+.+ ++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 11 nl~~~~~~~~~~~~~il~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 11 NVSYTYAKKTPFEFKALNNTSLTFK--------KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred EEEEEeCCCCccccceeeeeEEEEe--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccc
Confidence 478888754 48999999999 99999999999999999999999953 1
Q ss_pred ------HHhcCCcccCCCC--Cc--h---------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHH
Q 006859 408 ------LAQIGCYVPAHFS--TI--R---------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ------~~~~g~~v~~~~~--~i--~---------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i 455 (628)
..++| |+|+... .+ . .+..++..+++. +...+..+.+|+|++|+..+
T Consensus 83 ~~~~~~~~~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIG-LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEE-EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 11345 6665421 00 1 012334555663 45667788999999998888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++++ .+|++++||||++|+|+.....+. .++..+.+ .+.+++++||+.+ .+...++++ +.+.+|+++
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tiiiisH~~~--~~~~~~d~i------~~l~~G~i~ 230 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKKRIIMVTHNMD--QVLRIADEV------IVMHEGKVI 230 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHH--HHHHhCCEE------EEEECCEEE
Confidence 8766 789999999999999986655533 34444443 5899999999954 444444544 334555554
No 179
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=5.5e-19 Score=166.65 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=97.7
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHH--
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRI-- 428 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~-- 428 (628)
++++.|+. .++++++++++. +|++++|+||||||||||+++|+| ..++.+|.+.+.+..
T Consensus 5 ~l~~~~~~~~~~~l~~~~~~i~--------~Ge~~~i~G~nGsGKStLl~~l~G---------~~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 5 NVSFRYPGAEPPVLRNVSFSIE--------PGESLAIIGPSGSGKSTLARLILG---------LLRPTSGRVRLDGADIS 67 (173)
T ss_pred EEEEEcCCCCCcceeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHHh---------ccCCCCCeEEECCEEcc
Confidence 36777764 568999999998 999999999999999999999999 777777665432211
Q ss_pred -------HhhcCC--cc------ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 006859 429 -------FTRMGT--VD------NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492 (628)
Q Consensus 429 -------~~~~~~--~~------~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~ 492 (628)
...++. .+ ...... +|+|++|+..+++++ .+|+++++|||+.|.|+.....+.. ++..+.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~tv~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~ 144 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFSGSIAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ-AIAALKA 144 (173)
T ss_pred cCCHHHHHhheEEECCCCccccCcHHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHH-HHHHHHh
Confidence 111111 00 000111 788999887777765 8899999999999999866665444 4455555
Q ss_pred CCcEEEEEcCChhHHH
Q 006859 493 LKAYTIFASHMENLSE 508 (628)
Q Consensus 493 ~~~~vi~~tH~~~l~~ 508 (628)
.+.+++++||+.+...
T Consensus 145 ~~~tii~~sh~~~~~~ 160 (173)
T cd03246 145 AGATRIVIAHRPETLA 160 (173)
T ss_pred CCCEEEEEeCCHHHHH
Confidence 6899999999966443
No 180
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.80 E-value=4.2e-19 Score=172.55 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=110.0
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------HHHhcCC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------ILAQIGC 413 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------~~~~~g~ 413 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. +..++|
T Consensus 6 ~~l~~~~~~~~~l~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~- 76 (207)
T PRK13539 6 EDLACVRGGRVLFSGLSFTLA--------AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH- 76 (207)
T ss_pred EeEEEEECCeEEEeceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcE-
Confidence 347888887789999999999 99999999999999999999999953 122455
Q ss_pred cccCCCCC---ch-----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 414 YVPAHFST---IR-----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 414 ~v~~~~~~---i~-----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
|+++.... .. .....+..+|+.+....+.+.+|+|++|+..+++++ .+|+++++|||+.
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 156 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTA 156 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 55533211 01 123455667777666778889999999887777766 7899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
|.|+.....+. .++..+.+.+.+++++||+.+..
T Consensus 157 ~LD~~~~~~l~-~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 157 ALDAAAVALFA-ELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred cCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCchhh
Confidence 99986666543 44444555689999999996543
No 181
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.80 E-value=7.1e-19 Score=172.73 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=110.3
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------- 406 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------- 406 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+++|+|..
T Consensus 6 ~l~~~~~~~~~~~~il~~vs~~i~--------~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 6 NLNHYYGHGSLRKQVLFDINLEIN--------PGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEccCCCcceeEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHH
Confidence 36677754 678999999988 99999999999999999999999942
Q ss_pred --HHHhcCCcccCCCCCch-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 407 --ILAQIGCYVPAHFSTIR-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 407 --~~~~~g~~v~~~~~~i~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
+...+| |+|+....+. .+...+..+|+.+...+....+|+|++|+..+++.+
T Consensus 78 ~~~~~~i~-~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 78 VQLRRNIG-YIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred HHHHhheE-EEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 123455 6665431110 134456677887778888899999999888887766
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHH
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSEL 509 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~ 509 (628)
.+|+++++|||+.|+|+.....+.. ++..+.+ .+.+++++||+.++.++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~~sh~~~~~~~ 207 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVE-LMQKLAREQGCTILIVTHDNRILDV 207 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 7899999999999999866555444 4444444 58999999999765443
No 182
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.80 E-value=4e-19 Score=165.47 Aligned_cols=132 Identities=39% Similarity=0.547 Sum_probs=106.2
Q ss_pred EcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHh----------cCCcccCCCCCchHHH
Q 006859 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ----------IGCYVPAHFSTIRVVD 426 (628)
Q Consensus 357 ~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~----------~g~~v~~~~~~i~~~~ 426 (628)
..++||.+ ++||++.+.+ +.+++|+|||||||||++++++.+..+++ .|+++|+.+..+
T Consensus 3 ~~~~~~~~------~~~~~i~~~~-~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---- 71 (162)
T cd03227 3 VLGRFPSY------FVPNDVTFGE-GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL---- 71 (162)
T ss_pred eeCCCCEE------EeccEEecCC-CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE----
Confidence 34566655 6788888874 47999999999999999999999999998 998899887665
Q ss_pred HHHhhcCCccccccCcCchHHHHHHHHHHHHhC---C--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEc
Q 006859 427 RIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV---S--ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFAS 501 (628)
Q Consensus 427 ~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~---~--~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~t 501 (628)
++...+ +|++++++..+.+.+ + .|+++++|||++|||+.++..+...+.+++.+ +++++++|
T Consensus 72 -i~~~~~-----------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~T 138 (162)
T cd03227 72 -IFTRLQ-----------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVIT 138 (162)
T ss_pred -ehheee-----------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEc
Confidence 444433 566777666665554 2 78999999999999999999888888877766 89999999
Q ss_pred CChhHHHHhhh
Q 006859 502 HMENLSELATI 512 (628)
Q Consensus 502 H~~~l~~~~~~ 512 (628)
|++++....++
T Consensus 139 H~~~~~~~~d~ 149 (162)
T cd03227 139 HLPELAELADK 149 (162)
T ss_pred CCHHHHHhhhh
Confidence 99888776543
No 183
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.80 E-value=1.5e-18 Score=175.31 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=106.3
Q ss_pred CEEEEcC---------ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------
Q 006859 353 PLAIDGG---------RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------- 406 (628)
Q Consensus 353 ~l~~~~~---------~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------- 406 (628)
++++.|+ ..++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 7 ~l~~~~~~~~~~~~~~~~~il~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 7 DVTHTYRTGGLFGAKQRAPVLTNVSLSIE--------EGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeccCccccccCceEEeeCceeEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc
Confidence 3667774 3578888888888 99999999999999999999999963
Q ss_pred -------HHHhcCCcccCCCC--C---ch----------------------HHHHHHhhcCCc-cccccCcCchHHHHHH
Q 006859 407 -------ILAQIGCYVPAHFS--T---IR----------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKE 451 (628)
Q Consensus 407 -------~~~~~g~~v~~~~~--~---i~----------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~ 451 (628)
+...+| |+|+... . .. .+..++..+|+. .........+|+|++|
T Consensus 79 ~~~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q 157 (265)
T TIGR02769 79 DRKQRRAFRRDVQ-LVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQ 157 (265)
T ss_pred CHHHHHHHhhceE-EEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 112356 6666531 0 01 112345566775 4567788899999999
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHH
Q 006859 452 TAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLS 507 (628)
Q Consensus 452 ~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~ 507 (628)
+..+++++ .+|+++++|||++|+|+.....+.. ++..+.+ .+.+++++||+.+..
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~-~l~~~~~~~g~tiiivsH~~~~~ 214 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILE-LLRKLQQAFGTAYLFITHDLRLV 214 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHH
Confidence 88887665 8899999999999999865555444 4444444 589999999995543
No 184
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.79 E-value=1.1e-18 Score=174.32 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=105.5
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHHh
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~~ 410 (628)
++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. ....
T Consensus 5 ~l~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR01978 5 DLHVSVEDKEILKGVNLTVK--------KGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERAR 76 (243)
T ss_pred eEEEEECCEEEEeccceEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhc
Confidence 48888888889999999999 99999999999999999999999962 0011
Q ss_pred --cCCcccCCCCCch-------------------------------HHHHHHhhcCCcc-ccccCcC-chHHHHHHHHHH
Q 006859 411 --IGCYVPAHFSTIR-------------------------------VVDRIFTRMGTVD-NLESNSS-TFMTEMKETAFV 455 (628)
Q Consensus 411 --~g~~v~~~~~~i~-------------------------------~~~~~~~~~~~~~-~~~~~~s-~~s~~~~~~~~i 455 (628)
+| |+|+....++ .....+..+++.+ ...+... .+|+|++|+..+
T Consensus 77 ~~i~-~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~l 155 (243)
T TIGR01978 77 AGLF-LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEI 155 (243)
T ss_pred cceE-eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHH
Confidence 33 5554432110 1123344556653 3455665 499999988877
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
++.+ .+|+++++|||++|.|+.....+. .++..+.+.+.+++++||+.+..
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~tvi~vsH~~~~~ 207 (243)
T TIGR01978 156 LQMALLEPKLAILDEIDSGLDIDALKIVA-EGINRLREPDRSFLIITHYQRLL 207 (243)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHH-HHHHHHHHCCcEEEEEEecHHHH
Confidence 7665 889999999999999986655543 44455555689999999995544
No 185
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.79 E-value=1.2e-18 Score=174.32 Aligned_cols=151 Identities=18% Similarity=0.214 Sum_probs=108.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------- 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------- 407 (628)
++++.|+++++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 6 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 6 NLNLFYGEKEALKNINLDIP--------KNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred EEEEEECCeeeecceeEEEC--------CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 47888888889999999999 999999999999999999999999531
Q ss_pred ---HHhcCCcccCCCCCc--h----------------------HHHHHHhhcCCc----cccccCcCchHHHHHHHHHHH
Q 006859 408 ---LAQIGCYVPAHFSTI--R----------------------VVDRIFTRMGTV----DNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 ---~~~~g~~v~~~~~~i--~----------------------~~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i~ 456 (628)
..++| |+|+....+ . .....+..+|+. +........+|+|++|+..++
T Consensus 78 ~~~~~~i~-~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 156 (247)
T TIGR00972 78 VELRRRVG-MVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156 (247)
T ss_pred HHHHhheE-EEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence 11244 555442211 0 011234455665 556677889999999988888
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+.+ .+|+++++|||++|+|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 157 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivsH~~~--~~~~~~d~i 213 (247)
T TIGR00972 157 RALAVEPEVLLLDEPTSALDPIATGKIE-ELIQELKK-KYTIVIVTHNMQ--QAARISDRT 213 (247)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-cCeEEEEecCHH--HHHHhCCEE
Confidence 776 789999999999999986655543 34444544 489999999955 333334444
No 186
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.4e-18 Score=172.12 Aligned_cols=142 Identities=14% Similarity=0.126 Sum_probs=102.7
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+..+. ++++++. +|++++|+||||||||||+|+|+|+. ....+|
T Consensus 6 ~l~~~~~~~~~--~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~- 74 (232)
T PRK10771 6 DITWLYHHLPM--RFDLTVE--------RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVS- 74 (232)
T ss_pred EEEEEECCccc--eeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEE-
Confidence 46777765432 5666666 99999999999999999999999953 012344
Q ss_pred cccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
|+|+....+ + ....++..+|+.+.+.+.+..+|+|++|...+++++ .+|+++++|
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 555443111 0 123345667777777888899999999888887665 889999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhH
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENL 506 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l 506 (628)
||+.|+|+.....+.. ++..+. +.+.+++++||+.+.
T Consensus 155 EP~~gLD~~~~~~~~~-~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 155 EPFSALDPALRQEMLT-LVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHH
Confidence 9999999866555444 444444 458999999999653
No 187
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.79 E-value=8.9e-19 Score=183.73 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=109.1
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H------------H
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------------L 408 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------------~ 408 (628)
++++|++.++ ++++++. +|++++|+||||||||||||+|+|+. + .
T Consensus 5 l~~~~~~~~~--~isl~i~--------~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 5 FSKRLGDFSL--DADFTLP--------GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEECCEEE--EEEEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhh
Confidence 7788877654 6777777 99999999999999999999999953 0 1
Q ss_pred HhcCCcccCCCCCch----------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 409 AQIGCYVPAHFSTIR----------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 409 ~~~g~~v~~~~~~i~----------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
..+| |+|+....++ .+..++..+++.+...+....+|+|++|+..+++++ .+|+++
T Consensus 75 ~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 75 RRIG-YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred CCeE-EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1244 5555432111 123456677888888888999999999988888776 789999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+||||++|+|+.....+.. .+..+.+ .+.+++++||+.+ ++...++++
T Consensus 154 lLDEPts~LD~~~~~~l~~-~L~~l~~~~g~tiiivtH~~~--~~~~~~d~i 202 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILP-YLERLHAEFGIPILYVSHSLQ--EVLRLADRV 202 (354)
T ss_pred EEcCCCcCCCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHH--HHHHhCCEE
Confidence 9999999999866665444 4444444 4899999999954 333334444
No 188
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.2e-18 Score=177.45 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=105.9
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H-------
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------- 407 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------- 407 (628)
++++.|++ +++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 7 ~l~~~~~~~~~~~~~~l~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 7 NVSYTYQAGTPFEGRALFDVNLTIE--------DGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred EEEEEcCCCCccccceeeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 47778864 478999999998 99999999999999999999999953 1
Q ss_pred -----HHhcCCcccCCCC--Cc--hH---------------------HHHHHhhcCCc-cccccCcCchHHHHHHHHHHH
Q 006859 408 -----LAQIGCYVPAHFS--TI--RV---------------------VDRIFTRMGTV-DNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 -----~~~~g~~v~~~~~--~i--~~---------------------~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~ 456 (628)
...+| |+|+... .+ .+ +..++..+++. ....+..+.+|+|++|+..++
T Consensus 79 ~~~~~~~~i~-~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 79 DIKQIRKKVG-LVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred CHHHHHhheE-EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 12355 7766531 00 11 12234456775 346778889999999888887
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
+++ .+|+++|+|||++|+|+.....+.. ++..+.+.+.+++++||+.+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMT-LFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEeccHH
Confidence 765 8899999999999999866555433 44445555899999999955
No 189
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.79 E-value=3.2e-19 Score=162.52 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=96.3
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~ 432 (628)
++.+.|+..++++++++++. +|++++|+||||||||||+++|+| ..|+.+|.+.+.+. ..+
T Consensus 5 ~l~~~~~~~~~l~~~~~~~~--------~Ge~~~i~G~nGsGKStLl~~l~G---------~~~~~~G~i~~~~~--~~i 65 (144)
T cd03221 5 NLSKTYGGKLLLKDISLTIN--------PGDRIGLVGRNGAGKSTLLKLIAG---------ELEPDEGIVTWGST--VKI 65 (144)
T ss_pred EEEEEECCceEEEeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHcC---------CCCCCceEEEECCe--EEE
Confidence 47788887789999999998 999999999999999999999999 88999998765432 111
Q ss_pred CCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 433 GTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 433 ~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
+ ....+|+|++|+..+++.+ .+|+++++|||++|.|+.....+ .+.+.+.+.+++++||+.+..
T Consensus 66 ~-------~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l----~~~l~~~~~til~~th~~~~~ 130 (144)
T cd03221 66 G-------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL----EEALKEYPGTVILVSHDRYFL 130 (144)
T ss_pred E-------EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH----HHHHHHcCCEEEEEECCHHHH
Confidence 1 1112888998877777665 88999999999999987554443 333333367999999995533
No 190
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=175.98 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=109.5
Q ss_pred CCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H----H-HhcC
Q 006859 352 GPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I----L-AQIG 412 (628)
Q Consensus 352 ~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~----~-~~~g 412 (628)
.++++.|+ ++++++++++++. +|++++|+||||||||||+|+|+|+. + . ..+|
T Consensus 10 ~~l~~~~~~~~~il~~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~ 81 (272)
T PRK15056 10 NDVTVTWRNGHTALRDASFTVP--------GGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVA 81 (272)
T ss_pred EeEEEEecCCcEEEEeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEE
Confidence 34788885 5789999999999 99999999999999999999999963 1 1 1355
Q ss_pred CcccCCCC-------Cc-----------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 413 CYVPAHFS-------TI-----------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 413 ~~v~~~~~-------~i-----------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
|+|+... .+ ......+..+|+.+...+....+|+|++|+..+++++ .+
T Consensus 82 -~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 82 -YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred -EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 6654421 00 0123345667877777888899999999888887766 78
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
|+++++|||++|+|+.....+. .++..+.+.+.+++++||+.+
T Consensus 161 p~llllDEPt~~LD~~~~~~l~-~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARII-SLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHH
Confidence 9999999999999986665543 344555556899999999954
No 191
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.1e-18 Score=180.68 Aligned_cols=156 Identities=16% Similarity=0.137 Sum_probs=112.4
Q ss_pred CCCEEEEcC----------ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------
Q 006859 351 NGPLAIDGG----------RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------- 406 (628)
Q Consensus 351 ~~~l~~~~~----------~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------- 406 (628)
..++++.|+ ..++++++++++. +|++++|+|+||||||||+++|+|+.
T Consensus 8 v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~--------~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l 79 (327)
T PRK11308 8 AIDLKKHYPVKRGLFKPERLVKALDGVSFTLE--------RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDL 79 (327)
T ss_pred EeeeEEEEcCCCCccccCCceeEEeeeEEEEC--------CCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 345777774 2468888888888 99999999999999999999999953
Q ss_pred ----------HHHhcCCcccCCCC-------Cc--------------------hHHHHHHhhcCCc-cccccCcCchHHH
Q 006859 407 ----------ILAQIGCYVPAHFS-------TI--------------------RVVDRIFTRMGTV-DNLESNSSTFMTE 448 (628)
Q Consensus 407 ----------~~~~~g~~v~~~~~-------~i--------------------~~~~~~~~~~~~~-~~~~~~~s~~s~~ 448 (628)
+..++| |+|++.. .+ ..+...+..+|+. +..++....+|+|
T Consensus 80 ~~~~~~~~~~~r~~i~-~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 80 LKADPEAQKLLRQKIQ-IVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred CcCCHHHHHHHhCCEE-EEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 123466 6766531 10 0123446667775 3567788899999
Q ss_pred HHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcceeE
Q 006859 449 MKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKI 518 (628)
Q Consensus 449 ~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~ 518 (628)
|+|+..+++++ .+|+++|+|||+.++|......+.. ++..+. +.+.+++++||+.++. ...++++..
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~--~~~adrv~v 227 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLN-LMMDLQQELGLSYVFISHDLSVV--EHIADEVMV 227 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHH--HHhCCEEEE
Confidence 99988888776 8899999999999998866555444 333444 4589999999995544 334455533
No 192
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.79 E-value=9.5e-19 Score=192.89 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=115.6
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H---------H
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I---------L 408 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~---------~ 408 (628)
..++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+. + .
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~--------~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVY--------PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE 78 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEc--------CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 3458899988889999999999 99999999999999999999999964 0 1
Q ss_pred HhcCCcccCCCCCc----------------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHFSTI----------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~~~i----------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| |+|+....+ ..+...+..+|+.+..++.++++|+|++|+..+++++
T Consensus 79 ~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 79 AGIG-IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred CCEE-EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 1355 555432100 0123456677887777888899999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+|++++||||++|+|+.....+. .++..+.+.+.+++++||+.+ .+...++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvii~sHd~~--~~~~~~d~i 211 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLF-RVIRELKSQGRGIVYISHRLK--EIFEICDDV 211 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCHH--HHHHhCCEE
Confidence 889999999999999986655543 455556666899999999954 333344444
No 193
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.79 E-value=1.2e-20 Score=182.68 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=134.4
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCcccccc
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLES 440 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~ 440 (628)
..+++++++++. +|++++|+|.|||||||+-|+|.| +.+|.+|.+.+-++.++.+.
T Consensus 26 v~avd~Vsf~i~--------~ge~~glVGESG~GKSTlgr~i~~---------L~~pt~G~i~f~g~~i~~~~------- 81 (268)
T COG4608 26 VKAVDGVSFSIK--------EGETLGLVGESGCGKSTLGRLILG---------LEEPTSGEILFEGKDITKLS------- 81 (268)
T ss_pred eEEecceeEEEc--------CCCEEEEEecCCCCHHHHHHHHHc---------CcCCCCceEEEcCcchhhcc-------
Confidence 356777777777 999999999999999999999999 99999999887665544332
Q ss_pred CcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEE
Q 006859 441 NSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILH 520 (628)
Q Consensus 441 ~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~ 520 (628)
.......+.+.|...|. -.+...++|
T Consensus 82 --------------------------------------~~~~~~~v~elL~~Vgl----------~~~~~~ryP------ 107 (268)
T COG4608 82 --------------------------------------KEERRERVLELLEKVGL----------PEEFLYRYP------ 107 (268)
T ss_pred --------------------------------------hhHHHHHHHHHHHHhCC----------CHHHhhcCC------
Confidence 11112234444433330 134667788
Q ss_pred EEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 006859 521 FYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLY 593 (628)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~ 593 (628)
+++|+|+.||..+|+++|- .+|+|.+.+|..-+ ++.-|..-+.....+.++++||+..+.
T Consensus 108 -------------helSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 108 -------------HELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred -------------cccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 9999999999999999988 89999999998544 444444333333448999999999999
Q ss_pred HHHHHHHhhhccCCCHHHHHH-HHHHHHHHHhccC
Q 006859 594 HAAQRLICLKYSNQDEESIRH-ALQNLKESFIDGR 627 (628)
Q Consensus 594 ~~~~~~~~l~~g~~~~~~~~~-~l~~~~~~~~~~~ 627 (628)
.+|||+.+|..|++++.+..+ .+.+++|+||+.+
T Consensus 175 ~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~L 209 (268)
T COG4608 175 YISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKAL 209 (268)
T ss_pred hhcccEEEEecCceeEecCHHHHhhCCCCHHHHHH
Confidence 999999999999998776554 5778999999754
No 194
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.79 E-value=1e-18 Score=171.71 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=103.5
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++.+.|+. +++++++++++. +|++++|+||||||||||+++|+|+. +..
T Consensus 7 ~l~~~~~~~~~~~l~~i~~~i~--------~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 7 NVSFSYPNQEIPALDNVSLTIR--------AGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEcCCCCcccccceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 47777764 679999999999 99999999999999999999999953 112
Q ss_pred hcCCcccCCCCCc--hH---------------HHHHHhhcCCcccccc-----------CcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTI--RV---------------VDRIFTRMGTVDNLES-----------NSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i--~~---------------~~~~~~~~~~~~~~~~-----------~~s~~s~~~~~~~~i~~~~-~ 460 (628)
.+| |+|+....+ .+ ....+..+++.+.+.. ....+|+|++|+..+++++ .
T Consensus 79 ~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 79 NIG-YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hEE-EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 355 666553211 11 1223444555444433 2358999999888887766 7
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
+|+++++|||++|+|+.....+.. ++..+.+ +.+++++||+.++.+
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tii~~sH~~~~~~ 203 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKE-RLRQLLG-DKTLIIITHRPSLLD 203 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHH-HHHHhcC-CCEEEEEeCCHHHHH
Confidence 899999999999999866655444 3444444 389999999976543
No 195
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.79 E-value=1.1e-18 Score=193.33 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=110.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------H---------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------I--------------- 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------~--------------- 407 (628)
++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 5 ~l~~~~~~~~~l~~is~~i~--------~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~ 76 (520)
T TIGR03269 5 NLTKKFDGKEVLKNISFTIE--------EGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPS 76 (520)
T ss_pred EEEEEECCeEeeeceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccc
Confidence 47888988889999999999 99999999999999999999999973 0
Q ss_pred -------------------------------HHhcCCcccCC-CCCc---h---------------------HHHHHHhh
Q 006859 408 -------------------------------LAQIGCYVPAH-FSTI---R---------------------VVDRIFTR 431 (628)
Q Consensus 408 -------------------------------~~~~g~~v~~~-~~~i---~---------------------~~~~~~~~ 431 (628)
...+| ++|+. ...+ . .+..++..
T Consensus 77 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 77 KVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIA-IMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEM 155 (520)
T ss_pred ccccccccccccccccchhhhccCHHHHHHhhhcEE-EEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 01134 55543 1110 1 12234666
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHH
Q 006859 432 MGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLS 507 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l-~~~~~~vi~~tH~~~l~ 507 (628)
+|+.+...+.++++|+|++|+..+++++ .+|++++||||++|.|+.....+.. ++..+ .+.|.+++++||+.+..
T Consensus 156 ~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHH
Confidence 7777777788899999999988888776 7899999999999999866555444 44445 44689999999996543
No 196
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=7e-19 Score=165.92 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=97.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHH---
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIF--- 429 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~--- 429 (628)
.+.++|+..++++++++++. +|++++|+||||||||||+|+|+| ..|+.+|.+.+.+...
T Consensus 5 ~l~~~~~~~~~l~~~~~~i~--------~Ge~~~i~G~nGsGKStLl~~l~G---------~~~~~~G~i~~~g~~~~~~ 67 (173)
T cd03230 5 NLSKRYGKKTALDDISLTVE--------KGEIYGLLGPNGAGKTTLIKIILG---------LLKPDSGEIKVLGKDIKKE 67 (173)
T ss_pred EEEEEECCeeeeeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhC---------CCCCCCeEEEECCEEcccc
Confidence 37777877789999999999 999999999999999999999999 7777666553322110
Q ss_pred -----hhcCC-ccc--------cccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCC
Q 006859 430 -----TRMGT-VDN--------LESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK 494 (628)
Q Consensus 430 -----~~~~~-~~~--------~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~ 494 (628)
..++. .+. ...... +|+|++|+..+++++ .+|+++++|||++|.|+.....+.. +++.+.+.+
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~g 145 (173)
T cd03230 68 PEEVKRRIGYLPEEPSLYENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE-LLRELKKEG 145 (173)
T ss_pred hHhhhccEEEEecCCccccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCC
Confidence 11110 000 000011 788998887777665 8899999999999999866555443 455555558
Q ss_pred cEEEEEcCChhHH
Q 006859 495 AYTIFASHMENLS 507 (628)
Q Consensus 495 ~~vi~~tH~~~l~ 507 (628)
.+++++||+.+..
T Consensus 146 ~tiii~th~~~~~ 158 (173)
T cd03230 146 KTILLSSHILEEA 158 (173)
T ss_pred CEEEEECCCHHHH
Confidence 9999999996533
No 197
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.4e-18 Score=172.43 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=107.8
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------- 406 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 7 ~~~~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 7 RDVNFWYGDFHALKGISMEIE--------EKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred EEEEEEECCEeEEeeeeEEEe--------CCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 347888888889999999999 99999999999999999999999851
Q ss_pred ---HHHhcCCcccCCCCCc--h----------------------HHHHHHhhcCCcc----ccccCcCchHHHHHHHHHH
Q 006859 407 ---ILAQIGCYVPAHFSTI--R----------------------VVDRIFTRMGTVD----NLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 407 ---~~~~~g~~v~~~~~~i--~----------------------~~~~~~~~~~~~~----~~~~~~s~~s~~~~~~~~i 455 (628)
+..++| |+|+....+ . .+...+..+++.+ ........+|+|++|+..+
T Consensus 79 ~~~~~~~i~-~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 79 VDELRKNVG-MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHHHhhheE-EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 012345 666543211 0 0122344455532 3456677899999988877
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++.+ .+|+++|+|||++|+|+.....+.. ++..+. .+.+++++||+.+ .+...++++
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~-~~~tiiivtH~~~--~~~~~~d~v 215 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEE-LIHELK-KDYTIVIVTHNMQ--QAARVSDKT 215 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHh-cCCeEEEEeCCHH--HHHhhCCEE
Confidence 7665 8899999999999999866555433 444444 3789999999954 333444544
No 198
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.4e-18 Score=181.93 Aligned_cols=150 Identities=16% Similarity=0.220 Sum_probs=109.6
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------------ 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------------ 407 (628)
+++++|++..+ ++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 5 ~l~k~~~~~~~--~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 74 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLP--------AQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74 (352)
T ss_pred EEEEEeCCEEE--EEEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchh
Confidence 36777876432 6677777 99999999999999999999999953 0
Q ss_pred HHhcCCcccCCCCCch------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 408 LAQIGCYVPAHFSTIR------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i~------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
..++| |+|++...++ .+..++..+|+.+..++.+..+|+|++|+..+++++ .+|++++||
T Consensus 75 ~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 75 KRRIG-YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred hCCEE-EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 12345 5655432211 234456778888888889999999999988888776 889999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||++|+|+.....+.. .+..+. +.+.+++++||+.+ +....++++
T Consensus 154 EPts~LD~~~~~~l~~-~L~~l~~~~g~tii~vTHd~~--~~~~~~d~i 199 (352)
T PRK11144 154 EPLASLDLPRKRELLP-YLERLAREINIPILYVSHSLD--EILRLADRV 199 (352)
T ss_pred CCcccCCHHHHHHHHH-HHHHHHHhcCCeEEEEecCHH--HHHHhCCEE
Confidence 9999999866665444 344444 45899999999954 444444444
No 199
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.79 E-value=5.1e-19 Score=167.70 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=97.8
Q ss_pred CEEEEcCcc--CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHH---
Q 006859 353 PLAIDGGRH--PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDR--- 427 (628)
Q Consensus 353 ~l~~~~~~~--~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~--- 427 (628)
++++.|+.+ ++++++++++. +|++++|+||||||||||+|+|+| ..|+.+|.+.+.+.
T Consensus 5 ~~~~~~~~~~~~~l~~i~~~i~--------~Ge~~~i~G~nGsGKStLl~~l~G---------~~~~~~G~i~~~g~~~~ 67 (178)
T cd03247 5 NVSFSYPEQEQQVLKNLSLELK--------QGEKIALLGRSGSGKSTLLQLLTG---------DLKPQQGEITLDGVPVS 67 (178)
T ss_pred EEEEEeCCCCccceEEEEEEEc--------CCCEEEEECCCCCCHHHHHHHHhc---------cCCCCCCEEEECCEEHH
Confidence 367777654 79999999999 999999999999999999999999 77777765532211
Q ss_pred ----HH-hhcCC--cc------ccccC-cCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 006859 428 ----IF-TRMGT--VD------NLESN-SSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492 (628)
Q Consensus 428 ----~~-~~~~~--~~------~~~~~-~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~ 492 (628)
.+ ..++. .+ .+... ...+|+|++|+..+++++ .+|+++++|||+.|+|+.....+.. .+..+.
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~-~l~~~~- 145 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS-LIFEVL- 145 (178)
T ss_pred HHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHc-
Confidence 01 11110 00 00000 567899999887777665 8899999999999999865554333 444443
Q ss_pred CCcEEEEEcCChhHHH
Q 006859 493 LKAYTIFASHMENLSE 508 (628)
Q Consensus 493 ~~~~vi~~tH~~~l~~ 508 (628)
.+.+++++||+.+...
T Consensus 146 ~~~tii~~sh~~~~~~ 161 (178)
T cd03247 146 KDKTLIWITHHLTGIE 161 (178)
T ss_pred CCCEEEEEecCHHHHH
Confidence 4789999999976544
No 200
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4.7e-19 Score=166.75 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=95.9
Q ss_pred CEEEEcCcc--CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHH-
Q 006859 353 PLAIDGGRH--PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIF- 429 (628)
Q Consensus 353 ~l~~~~~~~--~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~- 429 (628)
++++.|+.. ++++++++++. +|++++|+||||||||||+|+|+| ..|+.+|.+.+.+..+
T Consensus 5 ~l~~~~~~~~~~~l~~i~~~i~--------~G~~~~l~G~nGsGKstLl~~i~G---------~~~~~~G~i~~~g~~~~ 67 (171)
T cd03228 5 NVSFSYPGRPKPVLKDVSLTIK--------PGEKVAIVGPSGSGKSTLLKLLLR---------LYDPTSGEILIDGVDLR 67 (171)
T ss_pred EEEEEcCCCCcccccceEEEEc--------CCCEEEEECCCCCCHHHHHHHHHc---------CCCCCCCEEEECCEEhh
Confidence 367777664 78999999999 999999999999999999999999 7777777554322111
Q ss_pred --------hhcCC--cc-ccccCcCc----hHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC
Q 006859 430 --------TRMGT--VD-NLESNSST----FMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL 493 (628)
Q Consensus 430 --------~~~~~--~~-~~~~~~s~----~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~ 493 (628)
..++. .+ .+.. .+. +|+|++|+..+++++ .+|+++++|||++|+|+.....+. .++..+.+
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~- 144 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL-EALRALAK- 144 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-
Confidence 11110 00 0000 011 788998887777665 889999999999999986655533 34444443
Q ss_pred CcEEEEEcCChhHHH
Q 006859 494 KAYTIFASHMENLSE 508 (628)
Q Consensus 494 ~~~vi~~tH~~~l~~ 508 (628)
+.+++++||+.+...
T Consensus 145 ~~tii~~sh~~~~~~ 159 (171)
T cd03228 145 GKTVIVIAHRLSTIR 159 (171)
T ss_pred CCEEEEEecCHHHHH
Confidence 689999999965543
No 201
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.6e-18 Score=190.39 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=108.5
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------H---HhcCCcccCCCC-
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------L---AQIGCYVPAHFS- 420 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------~---~~~g~~v~~~~~- 420 (628)
.++++.|++.++++++++++. +|++++|+||||||||||||+|+|..- + ..+| |+|+...
T Consensus 316 ~~l~~~y~~~~il~~isl~i~--------~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~ 386 (638)
T PRK10636 316 EKVSAGYGDRIILDSIKLNLV--------PGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLE 386 (638)
T ss_pred EeeEEEeCCeeeeccceEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchh
Confidence 347888888889999999999 999999999999999999999999531 1 1345 5554321
Q ss_pred ----Cch---------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHH
Q 006859 421 ----TIR---------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDG 479 (628)
Q Consensus 421 ----~i~---------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~ 479 (628)
... .+..++..+++. +...+.++.+|+|++++..+++.+ .+|+++|||||++|+|+...
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~ 466 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 000 122345667775 457788999999999888888766 78999999999888887554
Q ss_pred HHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 480 FAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 480 ~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.. +.+.+.+.+.+++++||+.++. ...++++
T Consensus 467 ~~----l~~~L~~~~gtvi~vSHd~~~~--~~~~d~i 497 (638)
T PRK10636 467 QA----LTEALIDFEGALVVVSHDRHLL--RSTTDDL 497 (638)
T ss_pred HH----HHHHHHHcCCeEEEEeCCHHHH--HHhCCEE
Confidence 44 3344444456999999996543 3334444
No 202
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=9.4e-19 Score=166.04 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=104.2
Q ss_pred EcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch-------------
Q 006859 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR------------- 423 (628)
Q Consensus 357 ~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~------------- 423 (628)
.+..+++|+|+++++. +|+.+||+|+||||||||||+|+| ..||++|.+.
T Consensus 36 ~~~~~~aL~disf~i~--------~Ge~vGiiG~NGaGKSTLlkliaG---------i~~Pt~G~v~v~G~v~~li~lg~ 98 (249)
T COG1134 36 KVAEFWALKDISFEIY--------KGERVGIIGHNGAGKSTLLKLIAG---------IYKPTSGKVKVTGKVAPLIELGA 98 (249)
T ss_pred CcceEEEecCceEEEe--------CCCEEEEECCCCCcHHHHHHHHhC---------ccCCCCceEEEcceEehhhhccc
Confidence 3456788999999998 999999999999999999999999 6777766543
Q ss_pred ----------------------------HHHHHHhhcCCccccccCcCchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCC
Q 006859 424 ----------------------------VVDRIFTRMGTVDNLESNSSTFMTEMK-ETAFVMQNVSERSLIVMDELGRAT 474 (628)
Q Consensus 424 ----------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~-~~~~i~~~~~~~~l~llDE~~~gt 474 (628)
..+.+...-.+.+.++.++.++|.||+ |++.......+|+++|+||..+--
T Consensus 99 Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 99 GFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred CCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 234455555677899999999999998 667777777899999999995433
Q ss_pred ChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+.- ..-+...++.+.+.+.+++++||++ ..+.+.|+++
T Consensus 179 D~~F-~~K~~~rl~e~~~~~~tiv~VSHd~--~~I~~~Cd~~ 217 (249)
T COG1134 179 DAAF-QEKCLERLNELVEKNKTIVLVSHDL--GAIKQYCDRA 217 (249)
T ss_pred CHHH-HHHHHHHHHHHHHcCCEEEEEECCH--HHHHHhcCee
Confidence 3321 1113334455556679999999994 4555555554
No 203
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.79 E-value=2.4e-18 Score=173.23 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=109.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------H-----H------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------I-----L------ 408 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------~-----~------ 408 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+. - .
T Consensus 10 ~~l~~~~~~~~il~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 10 RGLTKLYGPRKGCRDVSFDLY--------PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred eeeEEEcCCceeeeeeeEEEe--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 458888888889999999999 99999999999999999999999953 0 1
Q ss_pred -------HhcCCcccCCCCC-----ch----------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHH
Q 006859 409 -------AQIGCYVPAHFST-----IR----------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETA 453 (628)
Q Consensus 409 -------~~~g~~v~~~~~~-----i~----------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~ 453 (628)
..+| |+|++... .. .+..++..+++. +...+..+.+|+|++|+.
T Consensus 82 ~~~~~~~~~i~-~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 82 ERRRLLRTEWG-FVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred HHHHHhhcceE-EEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHH
Confidence 1245 66665320 00 112345567775 356788899999999888
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHH
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLS 507 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~ 507 (628)
.+++++ .+|+++++|||++|+|+.....+.. ++..+.+ .+.+++++||+.+..
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tii~isH~~~~~ 215 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVA 215 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHhcCcEEEEEeCCHHHH
Confidence 887765 8899999999999999865555433 4444444 589999999995544
No 204
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.78 E-value=2.3e-18 Score=168.26 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=106.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+. .+.++++++. +|++++|+||||||||||+|+|+|+. +...+|
T Consensus 5 ~l~~~~~~--~~~~~s~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~- 73 (213)
T TIGR01277 5 KVRYEYEH--LPMEFDLNVA--------DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS- 73 (213)
T ss_pred eeeEEeCC--cceeeEEEEe--------CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceE-
Confidence 36666653 3456777777 99999999999999999999999954 112244
Q ss_pred cccCCCCCc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
|+|+....+ . ....++..+|+.+...+.+..+|+|++|+..+++++ .+|+++++|
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 555443111 0 123355667777777788889999999888887665 889999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
||+.|.|......+.. ++..+.+ .+.+++++||+.+. +...++++
T Consensus 154 EPt~~LD~~~~~~~~~-~l~~~~~~~~~tii~vsh~~~~--~~~~~d~v 199 (213)
T TIGR01277 154 EPFSALDPLLREEMLA-LVKQLCSERQRTLLMVTHHLSD--ARAIASQI 199 (213)
T ss_pred CCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHH--HHhhcCeE
Confidence 9999999866555444 4444443 58999999999553 33334444
No 205
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.4e-18 Score=192.13 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=115.6
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH---------------------H-
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------------------L- 408 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------------------~- 408 (628)
..++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+.- .
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~--------~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 79 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVY--------PGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQ 79 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHH
Confidence 3458899988889999999999 999999999999999999999999640 1
Q ss_pred HhcCCcccCCCCC---ch----------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHH
Q 006859 409 AQIGCYVPAHFST---IR----------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 409 ~~~g~~v~~~~~~---i~----------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
.++| |+|+.... .. .+..++..+|+.+..++..+++|+|++|+..+++
T Consensus 80 ~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 80 LGIG-IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158 (510)
T ss_pred CCeE-EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 1355 66544210 00 1233456677777778888999999999888887
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+ .+|+++++|||++|+|+.....+. .++..+.+.|.+++++||+.+ .+...++++
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tiiivsHd~~--~~~~~~d~v 215 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLF-LIMNQLRKEGTAIVYISHKLA--EIRRICDRY 215 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHH--HHHHhCCEE
Confidence 76 789999999999999986655543 455556666899999999954 333334444
No 206
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.78 E-value=1.1e-18 Score=168.53 Aligned_cols=140 Identities=18% Similarity=0.158 Sum_probs=98.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHH-----
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDR----- 427 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~----- 427 (628)
++++.|+++++++++++++. +|++++|+||||||||||+++|+|+.- .++.+|.+.+.+.
T Consensus 5 ~l~~~~~~~~~l~~is~~i~--------~Ge~~~i~G~nGsGKStLl~~l~G~~~-------~~p~~G~i~~~g~~~~~~ 69 (200)
T cd03217 5 DLHVSVGGKEILKGVNLTIK--------KGEVHALMGPNGSGKSTLAKTIMGHPK-------YEVTEGEILFKGEDITDL 69 (200)
T ss_pred EEEEEeCCEEeeeccceEEC--------CCcEEEEECCCCCCHHHHHHHHhCCCc-------CCCCccEEEECCEECCcC
Confidence 47788888889999999999 999999999999999999999999310 2333333221110
Q ss_pred ------------------HHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHH
Q 006859 428 ------------------IFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCE 488 (628)
Q Consensus 428 ------------------~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~ 488 (628)
.+......+.+......+|+|++|+..+++++ .+|+++++|||+.|+|+.....+ ..++.
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~ 148 (200)
T cd03217 70 PPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVIN 148 (200)
T ss_pred CHHHHhhCcEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHH
Confidence 00000111112223357999999888777766 78999999999999998655553 44455
Q ss_pred HHHhCCcEEEEEcCChhHHH
Q 006859 489 HLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 489 ~l~~~~~~vi~~tH~~~l~~ 508 (628)
.+.+.+.+++++||+++...
T Consensus 149 ~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 149 KLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHCCCEEEEEecCHHHHH
Confidence 55556899999999966443
No 207
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=174.12 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=111.8
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 25 ~~l~~~~~~~~il~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 25 KDLSIYYGEKRAVNDISMDIE--------KHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred EEEEEEeCCceeeeceEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 458899988889999999999 999999999999999999999999521
Q ss_pred ----HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+ .+. ...+..+++. +...+..+.+|+|++|+..+
T Consensus 97 ~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~l 175 (268)
T PRK14248 97 VVNLRREIG-MVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175 (268)
T ss_pred HHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHH
Confidence 11244 555543211 111 1112233332 23456778899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++++ .+|+++++|||++|+|+.....+. .++..+.+ +.+++++||+.+ .+...++++ +.+++|++..
T Consensus 176 aral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiii~tH~~~--~~~~~~d~v------~~l~~G~i~~ 243 (268)
T PRK14248 176 ARTLAMKPAVLLLDEPASALDPISNAKIE-ELITELKE-EYSIIIVTHNMQ--QALRVSDRT------AFFLNGDLVE 243 (268)
T ss_pred HHHHhCCCCEEEEcCCCcccCHHHHHHHH-HHHHHHhc-CCEEEEEEeCHH--HHHHhCCEE------EEEECCEEEE
Confidence 7766 889999999999999986655543 34444544 689999999954 333444444 3345555543
No 208
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.9e-18 Score=175.62 Aligned_cols=152 Identities=15% Similarity=0.137 Sum_probs=112.3
Q ss_pred CCEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------H
Q 006859 352 GPLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------I 407 (628)
Q Consensus 352 ~~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~ 407 (628)
.++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~v~l~i~--------~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 8 ENLVFKYEKESDVNQLNGVSFSIT--------KGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred EEEEEEcCCCCcCeeeeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHH
Confidence 458888864 358999999999 99999999999999999999999953 1
Q ss_pred HHhcCCcccCCCC-Cc---h---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 408 LAQIGCYVPAHFS-TI---R---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 408 ~~~~g~~v~~~~~-~i---~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
...+| |+|+... .+ . .+..++..+|+.+...+....+|+|++|+..+++++ .+
T Consensus 80 ~~~i~-~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 80 RRKIG-MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred hcceE-EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 22355 6655421 01 1 112344555776667778889999999988888776 78
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+++|+|||++|+|+.....+.. ++..+.+ .+.+++++||+.+... .++++
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tiil~sH~~~~~~---~~d~i 210 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMR-VIHEIKEKYQLTVLSITHDLDEAA---SSDRI 210 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHH---hCCEE
Confidence 99999999999999876666444 4445554 4899999999966543 25555
No 209
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.78 E-value=2.6e-18 Score=172.58 Aligned_cols=147 Identities=16% Similarity=0.158 Sum_probs=108.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------H---------H------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------I---------L------ 408 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~---------~------ 408 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. + .
T Consensus 7 ~~l~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 7 SGLSKSYGGGKGCRDVSFDLY--------PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred eeeEEEeCCceEeecceEEEe--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHH
Confidence 348888887788999999999 99999999999999999999999953 0 0
Q ss_pred -------HhcCCcccCCCC-----Cch----------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHH
Q 006859 409 -------AQIGCYVPAHFS-----TIR----------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETA 453 (628)
Q Consensus 409 -------~~~g~~v~~~~~-----~i~----------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~ 453 (628)
..+| |+|++.. ... ....++..+++. .......+.+|+|++|+.
T Consensus 79 ~~~~~~~~~i~-~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 79 ERRRLMRTEWG-FVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HHHHhhhcceE-EEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 1244 5555421 010 112335566775 366778889999999888
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.+++++ .+|+++++|||++|+|+.....+...+.+...+.+.+++++||+.+..
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~ 212 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA 212 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 887766 889999999999999986666544434333334589999999995533
No 210
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=3e-18 Score=176.83 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=117.6
Q ss_pred CCCEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------H--
Q 006859 351 NGPLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------I-- 407 (628)
Q Consensus 351 ~~~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------~-- 407 (628)
..++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+. .
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~--------~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFE--------KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 3458888863 369999999999 99999999999999999999999953 0
Q ss_pred -------------------HHhcCCcccCCCC--Cc--h---------------------HHHHHHhhcCCc-cccccCc
Q 006859 408 -------------------LAQIGCYVPAHFS--TI--R---------------------VVDRIFTRMGTV-DNLESNS 442 (628)
Q Consensus 408 -------------------~~~~g~~v~~~~~--~i--~---------------------~~~~~~~~~~~~-~~~~~~~ 442 (628)
..++| |++++.. .+ . ....++..+|+. +...+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig-~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVS-MVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEE-EEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 12355 6665431 10 1 123345566775 4567788
Q ss_pred CchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEE
Q 006859 443 STFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHF 521 (628)
Q Consensus 443 s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~ 521 (628)
..+|+|++|+..+++++ .+|+++|+|||++|+|+.....+. .++..+.+.+.|++++||+.+ .+...++++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~TiiivtHd~~--~~~~~adri----- 246 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTME--HVLEVADEV----- 246 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHCCCEEEEEecCHH--HHHHhCCEE-----
Confidence 89999999988888776 889999999999999986655544 344445556899999999955 333334444
Q ss_pred EEEEeCCeeeE
Q 006859 522 YVVIRNNRLDF 532 (628)
Q Consensus 522 ~~~~~~~~~~~ 532 (628)
+++.+|+++.
T Consensus 247 -~vl~~G~i~~ 256 (320)
T PRK13631 247 -IVMDKGKILK 256 (320)
T ss_pred -EEEECCEEEE
Confidence 4456666653
No 211
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.1e-18 Score=173.51 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=111.3
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------- 407 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------- 407 (628)
.|.+. ..++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 10 ~~~l~-~~~l~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 10 QPQIK-VENLNLWYGEKQALKNVSMQIP--------KNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED 80 (258)
T ss_pred ceeEE-EeeeEEEeCCeeeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE
Confidence 44433 3458888988889999999999 999999999999999999999999521
Q ss_pred -----------HHhcCCcccCCCCCch--H---------------------HHHHHhhcCCc----cccccCcCchHHHH
Q 006859 408 -----------LAQIGCYVPAHFSTIR--V---------------------VDRIFTRMGTV----DNLESNSSTFMTEM 449 (628)
Q Consensus 408 -----------~~~~g~~v~~~~~~i~--~---------------------~~~~~~~~~~~----~~~~~~~s~~s~~~ 449 (628)
...+| |+|+....+. + +..++..+++. +.+......+|+|+
T Consensus 81 i~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 81 IYEPDVDVVELRKNVG-MVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred cccccchHHHHhhhEE-EEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 12244 6655432111 0 12234444542 33456778899999
Q ss_pred HHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 450 KETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 450 ~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+..+++++ .+|+++++|||++|.|+.....+. .++..+.+ +.+++++||+.+ .+.+.++++
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~-~~tiiivsH~~~--~~~~~~d~i 223 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIE-DLIMNLKK-DYTIVIVTHNMQ--QAARISDYT 223 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhh-CCEEEEEECCHH--HHHHhCCEE
Confidence 9888887776 789999999999999986655543 34444544 789999999954 333344544
No 212
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.78 E-value=2.5e-18 Score=173.82 Aligned_cols=145 Identities=13% Similarity=0.126 Sum_probs=106.8
Q ss_pred CCEEEEcC---------ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------
Q 006859 352 GPLAIDGG---------RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------- 406 (628)
Q Consensus 352 ~~l~~~~~---------~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------- 406 (628)
.++++.|+ .+++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 7 ~nl~~~~~~~~~~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLK--------SGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78 (268)
T ss_pred eceEEEecCCccccccCceeeEeceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 34778886 4678999999998 99999999999999999999999953
Q ss_pred --------HHHhcCCcccCCCC--C---ch----------------------HHHHHHhhcCCc-cccccCcCchHHHHH
Q 006859 407 --------ILAQIGCYVPAHFS--T---IR----------------------VVDRIFTRMGTV-DNLESNSSTFMTEMK 450 (628)
Q Consensus 407 --------~~~~~g~~v~~~~~--~---i~----------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~ 450 (628)
+...+| |+|+... . .. ....++..+|+. +........+|+|++
T Consensus 79 ~~~~~~~~~~~~i~-~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 79 LNRAQRKAFRRDIQ-MVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred cChhHHHHHHhcEE-EEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHH
Confidence 122355 5655431 0 00 123345566775 456778888999999
Q ss_pred HHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhH
Q 006859 451 ETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENL 506 (628)
Q Consensus 451 ~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l 506 (628)
|+..+++++ .+|+++|+|||++|+|......+.. +++.+.+ .+.+++++||+.+.
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~-~l~~~~~~~~~tiiivsH~~~~ 214 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR-LLKKLQQQFGTACLFITHDLRL 214 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHHHHcCcEEEEEECCHHH
Confidence 887777665 8899999999999998865555433 4444444 58999999999553
No 213
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=3e-18 Score=170.01 Aligned_cols=143 Identities=16% Similarity=0.202 Sum_probs=106.5
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++.+.|+.. +++++++++. +|++++|+||||||||||+++|+|+. ....+|
T Consensus 5 ~l~~~~~~~-~l~~is~~i~--------~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~- 74 (235)
T cd03299 5 NLSKDWKEF-KLKNVSLEVE--------RGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS- 74 (235)
T ss_pred eEEEEeCCc-eeeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEE-
Confidence 477778754 7888888888 99999999999999999999999953 112344
Q ss_pred cccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 414 YVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 414 ~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
++|+....+. .....+..+|+.+.+.+...++|+|++|+..+++++ .+|+++++|
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 5554432110 112345567777778888889999999888877766 889999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhH
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENL 506 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l 506 (628)
||+.|+|+..... .+.++..+.. .+++++++||+.+.
T Consensus 155 EPt~gLD~~~~~~-l~~~l~~~~~~~~~tili~tH~~~~ 192 (235)
T cd03299 155 EPFSALDVRTKEK-LREELKKIRKEFGVTVLHVTHDFEE 192 (235)
T ss_pred CCcccCCHHHHHH-HHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999999865554 4444555544 48999999999543
No 214
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.9e-18 Score=190.80 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=114.9
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH-----------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL----------------------- 408 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~----------------------- 408 (628)
.++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+.-.
T Consensus 9 ~nl~~~~~~~~il~~isl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 9 KNITKTFGGVKALDNVSLKVR--------AGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred eeeEEEeCCeEeecceeEEEe--------CCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 458899988899999999999 9999999999999999999999996420
Q ss_pred -HhcCCcccCCCCCc---------------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 -AQIGCYVPAHFSTI---------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 -~~~g~~v~~~~~~i---------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
..+| |+|++...+ ..+..++..+++.+...+..+++|+|++|+..+++++
T Consensus 81 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 81 RAGIA-IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred HCCeE-EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 1244 555432100 0123456667777777888899999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+|+++++|||++|+|+.....+. .++..+.+.+.+++++||+.+. +...++++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tvi~~tH~~~~--~~~~~d~v 213 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLL-DIIRDLKAHGIACIYISHKLNE--VKAISDTI 213 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCcHHH--HHHhcCEE
Confidence 789999999999999986665544 3455555668999999999543 33334444
No 215
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.78 E-value=1.8e-18 Score=179.18 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=104.2
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------HHHhcCCccc
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------ILAQIGCYVP 416 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~~~~~g~~v~ 416 (628)
.++++++++++. +|++++|+|+||||||||+++|+|+. +..++| |++
T Consensus 34 ~~~l~~vsl~i~--------~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~-~v~ 104 (331)
T PRK15079 34 LKAVDGVTLRLY--------EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQ-MIF 104 (331)
T ss_pred eEEEeeEEEEEc--------CCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceE-EEe
Confidence 457788888888 99999999999999999999999953 123456 666
Q ss_pred CCCC--C---chH-----------------------HHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 417 AHFS--T---IRV-----------------------VDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 417 ~~~~--~---i~~-----------------------~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
++.. . ..+ ....+..+++. +...+....+|+||+|+..+++++ .+|+++|
T Consensus 105 Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 105 QDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6531 1 111 12335556663 356778889999999988888776 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|||++|+|......+.. ++..+.+ .+.+++++||+++.. ...++++
T Consensus 185 lDEPts~LD~~~~~~i~~-lL~~l~~~~~~til~iTHdl~~~--~~~~dri 232 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVN-LLQQLQREMGLSLIFIAHDLAVV--KHISDRV 232 (331)
T ss_pred EeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHH--HHhCCEE
Confidence 999999999866655444 4444544 589999999995543 3344555
No 216
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.8e-18 Score=171.49 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=109.3
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------H
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------I 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 6 TNLNLFYGKKQALFDINMQIE--------QNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred eeeEEEECCEeeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 348888988889999999999 99999999999999999999999962 1
Q ss_pred HHhcCCcccCCCCCch-------------------------HHHHHHhhcCCc----cccccCcCchHHHHHHHHHHHHh
Q 006859 408 LAQIGCYVPAHFSTIR-------------------------VVDRIFTRMGTV----DNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i~-------------------------~~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
...+| |+|+....+. .+...+..+++. +........+|+|++|+..++++
T Consensus 78 ~~~i~-~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 78 RKNVG-MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hhhEE-EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 23455 6665532110 112344556663 23456678899999988888776
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+ .+|+++++|||++|+|+.....+.. .+..+.+ +.+++++||+.+ .+...++++
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~--~~~~~~d~i 211 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEE-LLKELSH-NLSMIMVTHNMQ--QGKRVADYT 211 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHH--HHHhhCcEE
Confidence 6 7899999999999999865554333 4444444 889999999954 333334444
No 217
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.78 E-value=1.1e-18 Score=168.03 Aligned_cols=145 Identities=14% Similarity=0.225 Sum_probs=105.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H----HHhcCCcc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I----LAQIGCYV 415 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~----~~~~g~~v 415 (628)
+++++|+++++++ +++++. +|++++|+||||||||||+++|+|+. + ...++ |+
T Consensus 6 ~l~~~~~~~~l~~-vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~-~~ 75 (195)
T PRK13541 6 QLQFNIEQKNLFD-LSITFL--------PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCT-YI 75 (195)
T ss_pred EeeEEECCcEEEE-EEEEEc--------CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEE-ec
Confidence 4777887766665 888888 99999999999999999999999953 0 11233 45
Q ss_pred cCCCCC---ch----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCC
Q 006859 416 PAHFST---IR----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATS 475 (628)
Q Consensus 416 ~~~~~~---i~----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~ 475 (628)
|+.... .. .....+..+++.+...+..+.+|+|++++..+++++ .+|+++++|||++|.|
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 433211 01 123344566777777888899999999887777666 7899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
+..... ...++....+.+.+++++||+.+...
T Consensus 156 ~~~~~~-l~~~l~~~~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 156 KENRDL-LNNLIVMKANSGGIVLLSSHLESSIK 187 (195)
T ss_pred HHHHHH-HHHHHHHHHhCCCEEEEEeCCccccc
Confidence 866444 33344444556899999999965443
No 218
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.78 E-value=5e-19 Score=165.55 Aligned_cols=135 Identities=14% Similarity=0.158 Sum_probs=94.4
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHH----
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDR---- 427 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~---- 427 (628)
++.+.|+ .+++++++++++. +|++++|+||||||||||+++|+| ..++.+|.+.+.+.
T Consensus 5 ~~~~~~~~~~~~l~~i~l~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G---------~~~~~~G~i~~~~~~~i~ 67 (166)
T cd03223 5 NLSLATPDGRVLLKDLSFEIK--------PGDRLLITGPSGTGKSSLFRALAG---------LWPWGSGRIGMPEGEDLL 67 (166)
T ss_pred EEEEEcCCCCeeeecCeEEEC--------CCCEEEEECCCCCCHHHHHHHHhc---------CCCCCCceEEECCCceEE
Confidence 3777775 4679999999999 999999999999999999999999 44444443321100
Q ss_pred ------HHhhcCCcccccc-CcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEE
Q 006859 428 ------IFTRMGTVDNLES-NSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIF 499 (628)
Q Consensus 428 ------~~~~~~~~~~~~~-~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~ 499 (628)
.+......+++.. ....+|+|++|+..+++++ .+|+++++|||++|.|+.....+ .+.+.+.+.++++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l----~~~l~~~~~tiii 143 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL----YQLLKELGITVIS 143 (166)
T ss_pred EECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHH----HHHHHHhCCEEEE
Confidence 0000111222221 4567999999887777665 88999999999888887554443 3333334789999
Q ss_pred EcCChhHHH
Q 006859 500 ASHMENLSE 508 (628)
Q Consensus 500 ~tH~~~l~~ 508 (628)
+||+.++..
T Consensus 144 vsh~~~~~~ 152 (166)
T cd03223 144 VGHRPSLWK 152 (166)
T ss_pred EeCChhHHh
Confidence 999976543
No 219
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4e-18 Score=170.95 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=112.2
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------- 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------- 407 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 10 ~l~~~~~~~~~l~~is~~i~--------~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 10 NLNLWYGSKQILFDINLDIY--------KREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred eEEEEECCeeeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 47888887889999999999 999999999999999999999999731
Q ss_pred ---HHhcCCcccCCCCCch--H-----------------------HHHHHhhcCCcc----ccccCcCchHHHHHHHHHH
Q 006859 408 ---LAQIGCYVPAHFSTIR--V-----------------------VDRIFTRMGTVD----NLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ---~~~~g~~v~~~~~~i~--~-----------------------~~~~~~~~~~~~----~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+. + ....+..+|+.+ ........+|+|++|+..+
T Consensus 82 ~~~~~~i~-~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 160 (251)
T PRK14244 82 VLLRAKVG-MVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCI 160 (251)
T ss_pred HHHhhhEE-EEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHH
Confidence 12345 6665532111 0 112244555543 2345677899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++.+ .+|+++++|||++|+|+.....+. .++..+. .+.+++++||+.+ .+...++++ +.+++|++.
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~-~~~tiiiisH~~~--~~~~~~d~i------~~l~~G~i~ 227 (251)
T PRK14244 161 ARAIAVKPTMLLMDEPCSALDPVATNVIE-NLIQELK-KNFTIIVVTHSMK--QAKKVSDRV------AFFQSGRIV 227 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHh-cCCeEEEEeCCHH--HHHhhcCEE------EEEECCEEE
Confidence 7766 789999999999999986555543 3444444 3799999999955 333334444 344555554
No 220
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.1e-18 Score=171.98 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=106.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 9 ~~l~~~~~~~~~l~~~s~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 9 SDLSVYYNKKKALNSVSLDFY--------PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred EeeEEEECCeeeeeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 458888988889999999999 999999999999999999999998621
Q ss_pred ----HHhcCCcccCCCCCc--hHHHH----------------------HHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RVVDR----------------------IFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~~~~----------------------~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
..++| |+|+....+ .+.+. .+..+++. +...+....+|+|++|+..+
T Consensus 81 ~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 81 TVDLRKEIG-MVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hHhhhhcEE-EEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 12344 566543211 11111 12223321 23456677899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++|+|||++|+|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tii~~sH~~~--~~~~~~d~i 217 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKD-DYTMLLVTRSMQ--QASRISDRT 217 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhh-CCeEEEEECCHH--HHHHhCCEE
Confidence 7765 889999999999999986655543 34444444 589999999954 444444544
No 221
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.4e-18 Score=178.17 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=111.4
Q ss_pred CCEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--------------------
Q 006859 352 GPLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------------------- 407 (628)
Q Consensus 352 ~~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------------------- 407 (628)
.++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 7 ~~l~~~~~~~~~~~~~l~~vsl~i~--------~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 7 DKLSVHFGDESAPFRAVDRISYSVK--------QGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eCeEEEECCCCccEEEEeeeEEEEC--------CCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 347777765 468999999999 999999999999999999999999641
Q ss_pred ----HH-----hcCCcccCCCCC-------ch--------------------HHHHHHhhcCCcc---ccccCcCchHHH
Q 006859 408 ----LA-----QIGCYVPAHFST-------IR--------------------VVDRIFTRMGTVD---NLESNSSTFMTE 448 (628)
Q Consensus 408 ----~~-----~~g~~v~~~~~~-------i~--------------------~~~~~~~~~~~~~---~~~~~~s~~s~~ 448 (628)
+. .+| ++|++... +. .....+..+|+.+ .+.+....+|+|
T Consensus 79 ~~~~~~~~r~~~i~-~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgG 157 (326)
T PRK11022 79 SEKERRNLVGAEVA-MIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGG 157 (326)
T ss_pred CHHHHHHHhCCCEE-EEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 11 255 67765411 00 1233456677753 456778899999
Q ss_pred HHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 449 MKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 449 ~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+|+..+++++ .+|+++|+|||+.|+|......+.. ++..+. +.+.+++++||+++.. ...++++
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~-lL~~l~~~~g~til~iTHdl~~~--~~~adri 224 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE-LLLELQQKENMALVLITHDLALV--AEAAHKI 224 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHH--HHhCCEE
Confidence 99988888776 8899999999999999866555444 444454 4689999999995543 3344555
No 222
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.5e-18 Score=172.17 Aligned_cols=152 Identities=17% Similarity=0.192 Sum_probs=107.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 17 ~~l~~~~~~~~il~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 17 RNLNFYYGKFHALKNINLDIA--------KNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred EEEEEEeCCeEEeeceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 458888888889999999999 999999999999999999999999631
Q ss_pred ----HHhcCCcccCCCCCc--hH----------------------HHHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RV----------------------VDRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~----------------------~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
..++| |+|++...+ .+ ...++..+++. +...+....+|+|++|+..+
T Consensus 89 ~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 89 IALLRAKVG-MVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred hHHHhcceE-EEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 11244 555543211 11 11233444442 33456778899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||++|.|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tiii~sH~~~--~~~~~~d~i 225 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEE-LITELKQ-DYTVVIVTHNMQ--QAARCSDYT 225 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHH--HHHHhCCEE
Confidence 7766 8899999999999998865554333 4444443 689999999954 333334444
No 223
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4e-18 Score=173.83 Aligned_cols=151 Identities=17% Similarity=0.242 Sum_probs=106.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------- 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------- 407 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 44 ~l~~~~~~~~il~~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 44 NFSIYYGEFEAVKKVNADIL--------SKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred eeEEEECCEEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 47888887788999988888 999999999999999999999999520
Q ss_pred ---HHhcCCcccCCCCCc--h----------------------HHHHHHhhcCC----ccccccCcCchHHHHHHHHHHH
Q 006859 408 ---LAQIGCYVPAHFSTI--R----------------------VVDRIFTRMGT----VDNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 ---~~~~g~~v~~~~~~i--~----------------------~~~~~~~~~~~----~~~~~~~~s~~s~~~~~~~~i~ 456 (628)
...+| |+|++...+ . .....+..+++ .+......+.+|+|++|+..++
T Consensus 116 ~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 116 VLLRKKIG-MVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HHhhhcEE-EECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 11344 666553211 0 01122334444 2345667788999999888887
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++ .+|+++|+|||++|+|+.....+.. ++..+.+ +.+++++||+.+. +...++++
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~~~~-~~tvIivsH~~~~--~~~~~d~i 251 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIED-LIQELRG-SYTIMIVTHNMQQ--ASRVSDYT 251 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHHH--HHHhCCEE
Confidence 766 7899999999999999865555433 4444444 5899999999554 33334444
No 224
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=3e-18 Score=166.27 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=101.1
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCC
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHF 419 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~ 419 (628)
+++++|+. +++++++++++. +|++++|+||||||||||+++|+|+. +..++| |+|+..
T Consensus 5 ~l~~~~~~~~~~~~~il~~~s~~i~--------~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~-~~~q~~ 75 (204)
T cd03250 5 DASFTWDSGEQETSFTLKDINLEVP--------KGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA-YVSQEP 75 (204)
T ss_pred EEEEecCCCCccccceeeeeeEEEC--------CCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEE-EEecCc
Confidence 47788865 379999999999 99999999999999999999999953 111234 454442
Q ss_pred CCc--hH--------------HHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 420 STI--RV--------------VDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 420 ~~i--~~--------------~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
..+ .. .......+++.+ ........+|+|++|+..+++++ .+|+++++|||+
T Consensus 76 ~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 76 WIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred hhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 110 00 111122222222 23345578999999888887776 889999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
+|+|+.....+...++..+.+.+.+++++||+.+...
T Consensus 156 ~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~ 192 (204)
T cd03250 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLP 192 (204)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHh
Confidence 9998855454444344444445899999999965544
No 225
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.3e-18 Score=189.48 Aligned_cols=153 Identities=14% Similarity=0.160 Sum_probs=114.3
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHHh
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~~ 410 (628)
++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+. +..+
T Consensus 3 nl~~~~~~~~il~~vs~~i~--------~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVR--------PHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 47888888889999999999 99999999999999999999999954 0123
Q ss_pred cCCcccCCCCCc---h------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 411 IGCYVPAHFSTI---R------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 411 ~g~~v~~~~~~i---~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
+| |+|+....+ . .+..++..+++.....+..+++|+|++|+..+++++ .+|
T Consensus 75 i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 75 IS-MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred EE-EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 55 666543110 0 123345566776667778899999999988888766 789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCccee
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVK 517 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~ 517 (628)
+++|+|||++|.|+.....+. .++..+.+.+.+++++||+.+ .+...++++.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvii~tH~~~--~~~~~~d~i~ 205 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLF-TIIRKLKERGCGIVYISHKME--EIFQLCDEIT 205 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHH--HHHHhCCEEE
Confidence 999999999999986655543 355556667899999999954 3333444443
No 226
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.1e-18 Score=171.10 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=107.0
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 8 ~~l~~~~~~~~~l~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (253)
T PRK14267 8 VNLRVYYGSNHVIKGVDLKIP--------QNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79 (253)
T ss_pred EeEEEEeCCeeeeecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccC
Confidence 458888988889999999999 999999999999999999999999631
Q ss_pred ----HHhcCCcccCCCCCc---hHH-----------------------HHHHhhcCCc----cccccCcCchHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI---RVV-----------------------DRIFTRMGTV----DNLESNSSTFMTEMKETA 453 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i---~~~-----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~~ 453 (628)
..++| |+|+....+ .+. ..++..+++. +........+|+|++|+.
T Consensus 80 ~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 80 PIEVRREVG-MVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred hHHHhhcee-EEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 01234 555443211 111 1223334442 234566778999999888
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+++++ .+|+++++|||++|+|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~--~~~~~~d~i 218 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEE-LLFELKK-EYTIVLVTHSPA--QAARVSDYV 218 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhh-CCEEEEEECCHH--HHHhhCCEE
Confidence 888766 8899999999999999865555333 4444444 689999999954 333334444
No 227
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.78 E-value=2.8e-18 Score=170.59 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=108.0
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++.+.|+ ..++++++++++. +|++++|+||||||||||+++|+|+. +..
T Consensus 5 ~l~~~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 5 HVRFRYKPDGPVILDNISLRIK--------PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred EEEEecCCCCccceeceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4677775 3678999999998 99999999999999999999999953 112
Q ss_pred hcCCcccCCCCCc--hHH---------------HHHHhhc-----------CCccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTI--RVV---------------DRIFTRM-----------GTVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i--~~~---------------~~~~~~~-----------~~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
.+| |+|+....+ .+. ...+... ++...+......+|+|++|+..+++++ .
T Consensus 77 ~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 77 QVG-VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred cEE-EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 355 666543211 111 1111111 222223456688999999988887766 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|+++++|||++|+|+.....+.. ++..+.+ +.+++++||+++... .++.+ +.+.+|+++
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~~~~---~~d~v------~~l~~G~i~ 215 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMR-NMHDICA-GRTVIIIAHRLSTVK---NADRI------IVMEKGRIV 215 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHH-HHHHhcC-CCEEEEEeCCHHHHH---hCCEE------EEEECCEEE
Confidence 899999999999999866655444 3444443 899999999966543 24544 334455554
No 228
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.1e-18 Score=190.13 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=113.9
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHH
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~ 409 (628)
.++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 8 ~~l~~~~~~~~il~~isl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 8 DGIGKTFPGVKALDDISFDCR--------AGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred eeeEEEECCEEEEeeeeEEEe--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 458889988889999999999 99999999999999999999999953 012
Q ss_pred hcCCcccCCCCCc---h------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHFSTI---R------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
++| |+|+....+ . .....+..+|+.+...+.++++|+|++|+..+++.+ .+
T Consensus 80 ~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 80 GVA-IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred CEE-EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 355 665442110 0 122345666776666778899999999988888766 78
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+++|+|||++|.|+.....+. .++..+.+.|.+++++||+.+ .+...++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~g~tiiiitHd~~--~~~~~~d~i 210 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLF-RVIRELRAEGRVILYVSHRME--EIFALCDAI 210 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHH--HHHHhCCEE
Confidence 9999999999999986655543 344555566899999999954 333334444
No 229
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.77 E-value=2e-18 Score=180.74 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=114.5
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HH-----------------
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------IL----------------- 408 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~----------------- 408 (628)
+..+||...+++++++++. +|++++|+||||||||||+|+|+|+. +.
T Consensus 30 ~~~~~g~~~~l~~vsf~i~--------~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~ 101 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIE--------EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLR 101 (382)
T ss_pred HHHhhCCEEEEEeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHH
Confidence 5566777888888888888 99999999999999999999999953 00
Q ss_pred ----HhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 ----AQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ----~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| |+|+..+.++ .....+..+|+.+..+.....+|+||+|+..+++++
T Consensus 102 ~~r~~~i~-~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa 180 (382)
T TIGR03415 102 RLRTHRVS-MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA 180 (382)
T ss_pred HHhcCCEE-EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 1355 6665543221 123446667888888888899999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+|+++++|||++|+|+.....+...+.+...+.+.|++++||+.+ +....++++
T Consensus 181 ~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~--e~~~l~DrI 235 (382)
T TIGR03415 181 MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD--EALKIGNRI 235 (382)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 8899999999999999977776555454433345899999999954 444445555
No 230
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.5e-18 Score=169.64 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=105.0
Q ss_pred CEEEEcCcc--CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGRH--PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~~--~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++.+.|+.+ ++++++++++. +|++++|+||||||||||+++|+|+. +..
T Consensus 5 ~l~~~~~~~~~~~l~~i~~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 5 NVTFRYPGDGPPVLRDISLDIP--------AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred EEEEEeCCCCccceeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 467777665 88999999999 99999999999999999999999954 123
Q ss_pred hcCCcccCCCCCc--hHHH------------------------HHHhhc--CCccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTI--RVVD------------------------RIFTRM--GTVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i--~~~~------------------------~~~~~~--~~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
.+| |+|+....+ .+.+ ..+..+ ++..........+|+|++|+..+++++ .
T Consensus 77 ~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 77 QIG-LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred hEE-EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 355 666543211 1111 111111 233334456778999999888888776 7
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+++++|||+.|+|+.....+. .++..+. .+.+++++||+.+... . ++++
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~-~~l~~~~-~~~tii~~sh~~~~~~--~-~d~v 206 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQ-AALERLM-KNRTTFVIAHRLSTIE--N-ADRI 206 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHH-HHHHHhc-CCCEEEEEecCHHHHh--h-CCEE
Confidence 89999999999999986655543 3444444 3789999999965543 2 5555
No 231
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.4e-18 Score=170.61 Aligned_cols=152 Identities=15% Similarity=0.201 Sum_probs=107.7
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 7 ~~l~~~~~~~~~l~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 7 RDLKVSFGQVEVLDGVNLEIP--------DNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred EeeEEEECCeeeeecceeEEc--------CCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHH
Confidence 348888888889999999999 999999999999999999999999631
Q ss_pred --HHhcCCcccCCCCCc---hHH-----------------------HHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 --LAQIGCYVPAHFSTI---RVV-----------------------DRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 --~~~~g~~v~~~~~~i---~~~-----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+ .+. ...+..+++. +..+.....+|+|++|+..+
T Consensus 79 ~~~~~i~-~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 79 ELRRRVQ-MVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HHhccEE-EEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 11244 555443211 111 1223344543 23566778899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||++|.|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~--~~~~~~d~i 215 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIES-LFLELKK-DMTIVLVTHFPQ--QAARISDYV 215 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHH--HHHHhcCEE
Confidence 7766 7899999999999999866555443 4444444 789999999955 333334444
No 232
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.1e-18 Score=170.96 Aligned_cols=153 Identities=17% Similarity=0.255 Sum_probs=108.0
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------------- 407 (628)
-.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 15 i~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 15 INGMNLWYGQHHALKNINLSIP--------ENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred EeeEEEEECCeeeEEeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 3458899988889999999999 999999999999999999999999631
Q ss_pred -----HHhcCCcccCCCCCc--hH----------------------HHHHHhhcCCc----cccccCcCchHHHHHHHHH
Q 006859 408 -----LAQIGCYVPAHFSTI--RV----------------------VDRIFTRMGTV----DNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 408 -----~~~~g~~v~~~~~~i--~~----------------------~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~ 454 (628)
...+| |+|+....+ .+ ....+..+++. +.+....+.+|+|++|+..
T Consensus 87 ~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 87 DLVELRKNIG-MVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred CHHHHhhceE-EEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 11234 555442111 00 11123344543 2345677889999998888
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++.+ .+|+++++|||+.|+|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiiivtH~~~--~~~~~~d~i 224 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKE-KYTIVIVTHNMQ--QAARVSDQT 224 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhc-CCEEEEEEcCHH--HHHHhCCEE
Confidence 87765 889999999999999986655543 34444544 689999999954 333444444
No 233
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.77 E-value=3.1e-18 Score=172.11 Aligned_cols=137 Identities=13% Similarity=0.074 Sum_probs=95.4
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH--------HhcCCcccCCCC---Cch-----
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL--------AQIGCYVPAHFS---TIR----- 423 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~--------~~~g~~v~~~~~---~i~----- 423 (628)
..++++++++++. +|++++|+||||||||||+++|+|+.-. .+++ ++++..+ ...
T Consensus 36 ~~~il~~is~~i~--------~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~-~~~~~~~~~~~~tv~enl 106 (264)
T PRK13546 36 TFFALDDISLKAY--------EGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS-VIAISAGLSGQLTGIENI 106 (264)
T ss_pred ceEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEe-EEecccCCCCCCcHHHHH
Confidence 4567788888888 9999999999999999999999994310 0011 1111100 000
Q ss_pred ----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHH
Q 006859 424 ----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSC 486 (628)
Q Consensus 424 ----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~ 486 (628)
....++..+++.+.+......+|+|+++...+++++ .+|++++||||+.|+|+.....+.. +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~ 185 (264)
T PRK13546 107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-K 185 (264)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-H
Confidence 112234445666777778889999999877777665 7899999999999998865554333 4
Q ss_pred HHHHHhCCcEEEEEcCChhH
Q 006859 487 CEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 487 ~~~l~~~~~~vi~~tH~~~l 506 (628)
+..+.+.+.+++++||+.+.
T Consensus 186 L~~~~~~g~tiIiisH~~~~ 205 (264)
T PRK13546 186 IYEFKEQNKTIFFVSHNLGQ 205 (264)
T ss_pred HHHHHHCCCEEEEEcCCHHH
Confidence 44455668999999999543
No 234
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.77 E-value=1.9e-18 Score=187.05 Aligned_cols=143 Identities=20% Similarity=0.279 Sum_probs=109.8
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHH--hcCCcccCCCCC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILA--QIGCYVPAHFST 421 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~--~~g~~v~~~~~~ 421 (628)
..+++.||.+++++++++++. +|+.+||+|+||+|||||||+|+|.. ... .+| +++++...
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~--------~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~-~l~Q~~~~ 77 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLN--------PGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVG-YLSQEPPL 77 (530)
T ss_pred eeeEEeeCCceeecCCcceeC--------CCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEE-EeCCCCCc
Confidence 358999999999999999999 99999999999999999999999932 111 233 33332211
Q ss_pred c---h---------------------------------------------------HHHHHHhhcCCccccccCcCchHH
Q 006859 422 I---R---------------------------------------------------VVDRIFTRMGTVDNLESNSSTFMT 447 (628)
Q Consensus 422 i---~---------------------------------------------------~~~~~~~~~~~~~~~~~~~s~~s~ 447 (628)
- . ....++..+|..+. .++.+++|+
T Consensus 78 ~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSG 156 (530)
T COG0488 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSG 156 (530)
T ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCH
Confidence 1 0 11223444555555 788999999
Q ss_pred HHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 448 EMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 448 ~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
|++.+..+++++ .+|++++|||| ||++|..++.| +.++|.+...++|++|||.++.+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEP---TNHLD~~~i~W-Le~~L~~~~gtviiVSHDR~FLd 214 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEP---TNHLDLESIEW-LEDYLKRYPGTVIVVSHDRYFLD 214 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCC---CcccCHHHHHH-HHHHHHhCCCcEEEEeCCHHHHH
Confidence 999888888776 88999999999 88888888777 77888776559999999977654
No 235
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.3e-18 Score=169.21 Aligned_cols=145 Identities=16% Similarity=0.222 Sum_probs=100.9
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+. +...
T Consensus 7 ~l~~~~~~~~~~l~~isl~i~--------~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 7 NVNFSYDEKKPVLKDINFSIK--------PGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred EEEEecCCCCccccceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 47788864 579999999999 99999999999999999999999953 1123
Q ss_pred cCCcccCCCCCc--hH---------------HHHHHhhcCC-----------ccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTI--RV---------------VDRIFTRMGT-----------VDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i--~~---------------~~~~~~~~~~-----------~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+| |+|+....+ .+ ....+..+++ ..........+|+|++|+..+++.+ .+
T Consensus 79 i~-~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IG-VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EE-EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 44 555543211 01 1111112222 2222334578999999888887766 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
|+++++|||+.|+|+.....+.. ++..+. .+.+++++||+.+...
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~-~l~~~~-~~~tii~~sh~~~~~~ 202 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQE-ALEKLM-KGRTSIIIAHRLSTIK 202 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHH-HHHHhc-CCCEEEEEecCHHHHh
Confidence 99999999999999866655443 444444 4889999999965543
No 236
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.9e-18 Score=170.39 Aligned_cols=152 Identities=20% Similarity=0.285 Sum_probs=107.5
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 8 ~nl~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 8 EQLNVHFGKNHAVKDVSMDFP--------ENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred EEEEEEeCCeeEEecceEEEc--------CCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 358888888889999999999 999999999999999999999999631
Q ss_pred ----HHhcCCcccCCCCCch---H----------------------HHHHHhhcCCc----cccccCcCchHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTIR---V----------------------VDRIFTRMGTV----DNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i~---~----------------------~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~ 454 (628)
..++| |+|+....+. + ....+..+++. +........+|+|++|+..
T Consensus 80 ~~~~~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 158 (252)
T PRK14256 80 PVSIRRRVG-MVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLC 158 (252)
T ss_pred hHHhhccEE-EEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHH
Confidence 11244 5555432111 1 11223344543 2344567789999998888
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++.+ .+|+++++|||++|.|+.....+. .+++.+.+ +.+++++||+.+ .+...++++
T Consensus 159 laral~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~tiiivsH~~~--~~~~~~d~i 217 (252)
T PRK14256 159 IARTIAVKPEVILMDEPASALDPISTLKIE-ELIEELKE-KYTIIIVTHNMQ--QAARVSDYT 217 (252)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHh-CCcEEEEECCHH--HHHhhCCEE
Confidence 87776 789999999999999986555543 34555554 579999999954 443444544
No 237
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4e-18 Score=172.32 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=107.9
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 24 ~nl~~~~~~~~il~~vsl~i~--------~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 24 KDLHVYYGKKEAIKGIDMQFE--------KNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eeEEEEECCeeeEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 458888888899999999999 999999999999999999999999641
Q ss_pred ----HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+ .+. ...+..+++. +...+....+|+|++|+..+
T Consensus 96 ~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 96 VYEMRKHIG-MVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred hHHHhcceE-EEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 11244 566543211 111 1123344442 34566778899999988887
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||++|+|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~--~~~~~~d~i 232 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEE-TMFELKK-NYTIIIVTHNMQ--QAARASDYT 232 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHH--HHHHhcCEE
Confidence 7766 7899999999999999866555433 4444543 689999999954 333444544
No 238
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.77 E-value=3.4e-18 Score=170.75 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=102.6
Q ss_pred CEEEEcCcc-CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCc---------
Q 006859 353 PLAIDGGRH-PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTI--------- 422 (628)
Q Consensus 353 ~l~~~~~~~-~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i--------- 422 (628)
+++++|+.+ +++++++ .+. +|++++|+||||||||||||+|+|+. ++.+|.+
T Consensus 5 ~~~~~y~~~~~~l~~i~-~i~--------~Ge~~~IvG~nGsGKSTLlk~l~Gl~---------~p~~G~I~~~~~~~~~ 66 (255)
T cd03236 5 EPVHRYGPNSFKLHRLP-VPR--------EGQVLGLVGPNGIGKSTALKILAGKL---------KPNLGKFDDPPDWDEI 66 (255)
T ss_pred CcceeecCcchhhhcCC-CCC--------CCCEEEEECCCCCCHHHHHHHHhCCc---------CCCCceEeeccccchh
Confidence 377888765 6899887 467 89999999999999999999999943 2222221
Q ss_pred ---------------------------------------------------hHHHHHHhhcCCccccccCcCchHHHHHH
Q 006859 423 ---------------------------------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKE 451 (628)
Q Consensus 423 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~ 451 (628)
.....++..+|+.+...+....+|+|++|
T Consensus 67 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 146 (255)
T cd03236 67 LDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQ 146 (255)
T ss_pred hhhccCchhhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 11233455667777677788899999998
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 452 TAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 452 ~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
+..+++.+ .+|+++++|||++|+|+.....+.+ ++..+.+.+++++++||+.+..
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~-~l~~l~~~~~tIIiiSHd~~~~ 202 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYVLVVEHDLAVL 202 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHH
Confidence 88887766 7899999999999999866555443 4555555689999999995543
No 239
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.77 E-value=4.1e-18 Score=168.49 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=98.0
Q ss_pred ccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH-----------------------HhcCCcccCCCC
Q 006859 364 LESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL-----------------------AQIGCYVPAHFS 420 (628)
Q Consensus 364 l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~-----------------------~~~g~~v~~~~~ 420 (628)
++++++++. +|++++|+||||||||||+|+|+|+.-. ..+| |+|++..
T Consensus 2 l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~-~~~q~~~ 72 (230)
T TIGR02770 2 VQDLNLSLK--------RGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA-TIMQNPR 72 (230)
T ss_pred ccceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeE-EEecCch
Confidence 456666666 9999999999999999999999996311 1344 5554431
Q ss_pred -----CchH---------------------HHHHHhhcCCc---cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCC
Q 006859 421 -----TIRV---------------------VDRIFTRMGTV---DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDEL 470 (628)
Q Consensus 421 -----~i~~---------------------~~~~~~~~~~~---~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~ 470 (628)
.... +..++..+++. +...+..+.+|+|++|+..+++++ .+|++++||||
T Consensus 73 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 73 TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred hhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0110 12234455665 345677888999999888887766 78999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 471 GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 471 ~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++|.|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 153 t~~LD~~~~~~l~~-~l~~~~~~~~~tiii~sH~~~--~~~~~~d~i 196 (230)
T TIGR02770 153 TTDLDVVNQARVLK-LLRELRQLFGTGILLITHDLG--VVARIADEV 196 (230)
T ss_pred ccccCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 99999866555433 4444444 5899999999954 444444544
No 240
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.5e-18 Score=171.43 Aligned_cols=144 Identities=19% Similarity=0.248 Sum_probs=103.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 8 ~~l~~~~~~~~~l~~~sl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~ 79 (251)
T PRK14251 8 KDVHLSYGNYEALHGISLDFE--------EKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79 (251)
T ss_pred EeeEEEECCeeeeeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccch
Confidence 458889988899999999999 999999999999999999999999641
Q ss_pred ----HHhcCCcccCCCCCc--hH----------------------HHHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RV----------------------VDRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~----------------------~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |++++...+ ++ ....+..+++. +........+|+|++|+..+
T Consensus 80 ~~~~~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 80 LVELRKEVG-MVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HHHhhccEE-EEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 11233 444442211 11 11223334542 33456778899999988877
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
++++ .+|+++|+|||++|+|+.....+.. ++..+.+ +.+++++||+.+.
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiiiisH~~~~ 208 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEE-TLMELKH-QYTFIMVTHNLQQ 208 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHH-HHHHHHc-CCeEEEEECCHHH
Confidence 7665 8899999999999999865555433 4444443 6899999999553
No 241
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6e-18 Score=169.63 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=110.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------- 407 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------- 407 (628)
++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 8 ~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 8 DLDLFYGDFQALKKINLDIE--------ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred EEEEEECCceeeecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 47888887889999999999 999999999999999999999999521
Q ss_pred ---HHhcCCcccCCCCCc--hHHHH----------------------HHhhcCCc----cccccCcCchHHHHHHHHHHH
Q 006859 408 ---LAQIGCYVPAHFSTI--RVVDR----------------------IFTRMGTV----DNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 ---~~~~g~~v~~~~~~i--~~~~~----------------------~~~~~~~~----~~~~~~~s~~s~~~~~~~~i~ 456 (628)
...+| |+|+....+ ...+. .+..+++. +...+...++|+|++|+..++
T Consensus 80 ~~~~~~i~-~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 80 NQLRKRVG-MVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 11244 666543211 11111 11223321 233566778999999888887
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+++ .+|+++++|||++|+|+.....+.. ++..+.+ +.+++++||+.+ .+...++++ +.+++|+++
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiii~sH~~~--~~~~~~d~v------~~l~~G~i~ 224 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEE-LIQELKK-DYTIVIVTHNMQ--QASRISDKT------AFFLNGEIV 224 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEEeCHH--HHHhhCCEE------EEEECCEEE
Confidence 776 8899999999999999866555433 4444443 789999999954 333344444 334455554
No 242
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.77 E-value=2.9e-18 Score=169.20 Aligned_cols=155 Identities=11% Similarity=0.138 Sum_probs=108.9
Q ss_pred CcccccccCCCCEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------
Q 006859 342 RYTRPHFTENGPLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------ 406 (628)
Q Consensus 342 ~~~~p~~~~~~~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------ 406 (628)
+-..|.+.- .++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 6 ~~~~~~l~~-~~l~~~~~~~~~~~~l~~is~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 76 (226)
T cd03248 6 DHLKGIVKF-QNVTFAYPTRPDTLVLQDVSFTLH--------PGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK 76 (226)
T ss_pred CCcCceEEE-EEEEEEeCCCCCCccccceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC
Confidence 334555543 348888864 479999999999 99999999999999999999999953
Q ss_pred ---------HHHhcCCcccCCCCCc--hH------------------------HHHHHhhc--CCccccccCcCchHHHH
Q 006859 407 ---------ILAQIGCYVPAHFSTI--RV------------------------VDRIFTRM--GTVDNLESNSSTFMTEM 449 (628)
Q Consensus 407 ---------~~~~~g~~v~~~~~~i--~~------------------------~~~~~~~~--~~~~~~~~~~s~~s~~~ 449 (628)
....+| |+|+....+ .+ ....+..+ |+.+........+|+|+
T Consensus 77 ~~~~~~~~~~~~~i~-~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~ 155 (226)
T cd03248 77 PISQYEHKYLHSKVS-LVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ 155 (226)
T ss_pred chHHcCHHHHHhhEE-EEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence 112345 555443110 00 01223334 55555677788899999
Q ss_pred HHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 450 KETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 450 ~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
+|+..+++.+ .+|+++++|||++|.|+.....+.. ++..+.+ +.+++++||+++...
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tii~~sh~~~~~~ 213 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ-ALYDWPE-RRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHcC-CCEEEEEECCHHHHH
Confidence 9888877766 8899999999999999876655444 3333444 589999999976553
No 243
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=3.4e-18 Score=151.42 Aligned_cols=140 Identities=19% Similarity=0.276 Sum_probs=105.5
Q ss_pred EcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhcCCcc
Q 006859 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQIGCYV 415 (628)
Q Consensus 357 ~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~g~~v 415 (628)
.-+..++|+++++.+. +|++++|+||+|||||||+|+++.+. +..|+. |+
T Consensus 12 ~a~~a~il~~isl~v~--------~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~Vs-Y~ 82 (223)
T COG4619 12 LAGDAKILNNISLSVR--------AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS-YC 82 (223)
T ss_pred hcCCCeeecceeeeec--------CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHH-HH
Confidence 3456788888888888 99999999999999999999999943 122222 22
Q ss_pred cCCCCCc---------------------hHHHHHHhhcCCcccc-ccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 416 PAHFSTI---------------------RVVDRIFTRMGTVDNL-ESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 416 ~~~~~~i---------------------~~~~~~~~~~~~~~~~-~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
.+.+..+ ..+-..+.+++..+.+ .+....+|||.+|+..+.+.+ ..|.+++|||+++
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 2221111 0234567777776654 556778999999988888877 7799999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
.+|+.....+...+..+..+....++.+||+.+
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d 195 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChH
Confidence 888877777666666777788899999999954
No 244
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=180.50 Aligned_cols=201 Identities=16% Similarity=0.153 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCc--cccc--------ccCCCCEEEEcCc-c
Q 006859 294 IRTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKP-VDRY--TRPH--------FTENGPLAIDGGR-H 361 (628)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~-~~~~--~~p~--------~~~~~~l~~~~~~-~ 361 (628)
+....-+.+++.+.......-.++...+..++.+ .+-........ .... .+|. +.+..++.+.|+. +
T Consensus 257 ~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~-~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~ 335 (530)
T COG0488 257 QKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKL-EARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR 335 (530)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCc
Confidence 3344445556666666655556777777788887 53211111000 0001 1111 1122346777744 6
Q ss_pred CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------H---HHhcCCcccCCCCCc---------
Q 006859 362 PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------I---LAQIGCYVPAHFSTI--------- 422 (628)
Q Consensus 362 ~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------~---~~~~g~~v~~~~~~i--------- 422 (628)
++++++++.+. .|+.++|+||||+|||||||+|+|.. . -.++| |+++.....
T Consensus 336 ~l~~~~s~~i~--------~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig-yf~Q~~~~l~~~~t~~d~ 406 (530)
T COG0488 336 LLLKDLSFRID--------RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG-YFDQHRDELDPDKTVLEE 406 (530)
T ss_pred eeecCceEEec--------CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE-EEEehhhhcCccCcHHHH
Confidence 89999999998 99999999999999999999997732 0 01234 444333111
Q ss_pred ----------hHHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 006859 423 ----------RVVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHL 490 (628)
Q Consensus 423 ----------~~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l 490 (628)
..+...+.+++.. +...++++++|+|++.+..++..+ .+|.++||||| ||++|-.+ ..++.+.|
T Consensus 407 l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP---TNhLDi~s-~~aLe~aL 482 (530)
T COG0488 407 LSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP---TNHLDIES-LEALEEAL 482 (530)
T ss_pred HHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC---CccCCHHH-HHHHHHHH
Confidence 1223345556654 456788899999999766666554 88999999999 77777665 45577788
Q ss_pred HhCCcEEEEEcCChhHHH
Q 006859 491 LSLKAYTIFASHMENLSE 508 (628)
Q Consensus 491 ~~~~~~vi~~tH~~~l~~ 508 (628)
.+...++++||||..+.+
T Consensus 483 ~~f~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 483 LDFEGTVLLVSHDRYFLD 500 (530)
T ss_pred HhCCCeEEEEeCCHHHHH
Confidence 888999999999987654
No 245
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.8e-18 Score=172.56 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=109.3
Q ss_pred ccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--------------------
Q 006859 348 FTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------------------- 407 (628)
Q Consensus 348 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------------------- 407 (628)
+..-.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFCDIP--------RGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3344568888988889999999999 999999999999999999999999631
Q ss_pred --------HHhcCCcccCCCCCc--hH--------------------HHHHHhhcCC----ccccccCcCchHHHHHHHH
Q 006859 408 --------LAQIGCYVPAHFSTI--RV--------------------VDRIFTRMGT----VDNLESNSSTFMTEMKETA 453 (628)
Q Consensus 408 --------~~~~g~~v~~~~~~i--~~--------------------~~~~~~~~~~----~~~~~~~~s~~s~~~~~~~ 453 (628)
...+| |+|+....+ .+ ....+..+++ .+........+|+|++|+.
T Consensus 85 ~~~~~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 85 PRVDPVEVRRRIG-MVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred ccCCHHHHhhceE-EEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 11244 666543211 11 1112333333 2234566778999999888
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+++++ .+|+++++|||++|+|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~~~~-~~tiiivtH~~~--~~~~~~d~i 223 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEE-TMHELKK-NFTIVIVTHNMQ--QAVRVSDMT 223 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHH--HHHHhcCEE
Confidence 887766 7899999999999999866555433 4444443 689999999954 444444544
No 246
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.77 E-value=3.7e-18 Score=169.83 Aligned_cols=125 Identities=12% Similarity=0.186 Sum_probs=91.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHH--------HH-hcCCcccCCCC-----Cch---------------HHHHHHhh
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVI--------LA-QIGCYVPAHFS-----TIR---------------VVDRIFTR 431 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~--------~~-~~g~~v~~~~~-----~i~---------------~~~~~~~~ 431 (628)
+|++++|+||||||||||+|+|+|+.- -. .++ |+|+... ++. ....++..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEE-EecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 799999999999999999999999531 11 233 4443321 100 12335566
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHH
Q 006859 432 MGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLS 507 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~ 507 (628)
+++.+...+..+.+|+|++|+..+++++ .+|+++++|||++++|+.....+.. ++..+. +.+.+++++||+.+..
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiiivsHd~~~~ 179 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK-VIRRFAENNEKTAFVVEHDIIMI 179 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHH
Confidence 7777777888899999999888877766 8899999999999999876665444 444444 4589999999995543
No 247
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5e-18 Score=170.53 Aligned_cols=145 Identities=18% Similarity=0.200 Sum_probs=104.3
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------------- 407 (628)
..++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 10 TENLNLFYTDFKALNNINIKIL--------KNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred EeeeEEEeCCceeecceeeEEc--------CCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 3458888888889999999999 999999999999999999999999531
Q ss_pred -----HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCC----ccccccCcCchHHHHHHHHH
Q 006859 408 -----LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGT----VDNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 408 -----~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~----~~~~~~~~s~~s~~~~~~~~ 454 (628)
...+| |+|++...+ .+. ...+..+++ .+......+.+|+|++|+..
T Consensus 82 ~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 82 DILELRRKIG-MVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred cHHHHhhceE-EEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 11234 555443211 111 111223333 23345667889999999888
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
+++.+ .+|+++|+|||++|+|+.....+.. ++..+.+ +.+++++||+.+.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tvii~sH~~~~ 211 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEE-LIINLKE-SYTIIIVTHNMQQ 211 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHHH
Confidence 88776 7899999999999999866555444 4444543 6899999999553
No 248
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.77 E-value=3.8e-18 Score=166.29 Aligned_cols=125 Identities=13% Similarity=0.061 Sum_probs=86.4
Q ss_pred cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch-------------------
Q 006859 363 ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR------------------- 423 (628)
Q Consensus 363 ~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~------------------- 423 (628)
+++++++++. +|++++|+||||||||||+|+|+|+. |+.+|.+.
T Consensus 2 vl~~vs~~i~--------~Ge~~~l~G~NGsGKSTLlk~i~Gl~---------~~~sG~i~~~~~~~~~~~~~~~l~~~l 64 (213)
T PRK15177 2 VLDKTDFVMG--------YHEHIGILAAPGSGKTTLTRLLCGLD---------APDEGDFIGLRGDALPLGANSFILPGL 64 (213)
T ss_pred eeeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCc---------cCCCCCEEEecCceeccccccccCCcC
Confidence 5667777777 99999999999999999999999943 22222211
Q ss_pred -HHH------------------HHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHH
Q 006859 424 -VVD------------------RIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIA 483 (628)
Q Consensus 424 -~~~------------------~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~ 483 (628)
..+ .+....++.+..+...+.+|+|++++..+++++ .+|+++++|||+.+.++.....+.
T Consensus 65 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~ 144 (213)
T PRK15177 65 TGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQ 144 (213)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 000 111223344445567788999999877776665 889999999998888776555444
Q ss_pred HHHHHHHHhCCcEEEEEcCChhH
Q 006859 484 WSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 484 ~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
..+.+.+. +.+++++||+++.
T Consensus 145 ~~l~~~~~--~~~ii~vsH~~~~ 165 (213)
T PRK15177 145 AALACQLQ--QKGLIVLTHNPRL 165 (213)
T ss_pred HHHHHHhh--CCcEEEEECCHHH
Confidence 43434332 4579999999653
No 249
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.77 E-value=4.9e-18 Score=167.52 Aligned_cols=149 Identities=13% Similarity=0.157 Sum_probs=105.1
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH---------------------
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI--------------------- 407 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~--------------------- 407 (628)
++.+++.+ +++++++++++. +|++++|+||||||||||+|+|+|+..
T Consensus 8 ~~~~~~~~~~~~~~~l~~vsl~i~--------~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 8 DVGLKAKNWNKYARILNDVSLHVE--------SGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79 (226)
T ss_pred cceeeeecCccccccccCceEEEc--------CCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHh
Confidence 36666643 689999999999 999999999999999999999999642
Q ss_pred HHhcCCcccCCCCCc---hHH------------------------HH-HHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 408 LAQIGCYVPAHFSTI---RVV------------------------DR-IFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i---~~~------------------------~~-~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
..++| |+|+....+ .+. .. .+..+++.+...+....+|+|++|+..+++.+
T Consensus 80 ~~~i~-~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 80 QKCVA-YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred cccEE-EeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 11234 555443211 111 11 33334444445566788999999887777665
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh--hHHHHhh
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME--NLSELAT 511 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~--~l~~~~~ 511 (628)
.+|+++++|||++|+|+.....+.. ++..+.+.+.+++++||+. ++.++++
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~-~l~~~~~~~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVS-TLSQLARRNRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCCHHHHHhCC
Confidence 7899999999999999866555444 4444555689999999995 3445444
No 250
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.9e-18 Score=170.96 Aligned_cols=152 Identities=18% Similarity=0.222 Sum_probs=107.1
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 8 ~~v~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~ 79 (258)
T PRK14241 8 KDLNIYYGSFHAVEDVNLNIE--------PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVD 79 (258)
T ss_pred eeEEEEECCEeeeeeeeEEEc--------CCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccC
Confidence 358888888889999999999 999999999999999999999999631
Q ss_pred ----HHhcCCcccCCCCCc---hH----------------------HHHHHhhcCCc----cccccCcCchHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI---RV----------------------VDRIFTRMGTV----DNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i---~~----------------------~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~ 454 (628)
...+| |+|+....+ .+ ...++..+++. +........+|+|++|+..
T Consensus 80 ~~~~~~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 80 PVAVRRTIG-MVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred hHHHhcceE-EEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 01233 444432111 11 11223344542 3456677889999998888
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++++ .+|+++++|||++|+|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tviivsH~~~--~~~~~~d~i 217 (258)
T PRK14241 159 IARAIAVEPDVLLMDEPCSALDPISTLAIE-DLINELKQ-DYTIVIVTHNMQ--QAARVSDQT 217 (258)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CCEEEEEecCHH--HHHHhCCEE
Confidence 88776 789999999999999986655543 34444443 689999999954 333344444
No 251
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.2e-18 Score=170.94 Aligned_cols=158 Identities=15% Similarity=0.205 Sum_probs=110.7
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------- 407 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------- 407 (628)
.|.+. ..++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 17 ~~~l~-~~nl~~~~~~~~il~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 17 EIKMR-ARDVSVFYGEKQALFDVDLDIP--------EKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87 (267)
T ss_pred CceEE-EEeEEEEECCEEEEEEEEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE
Confidence 34443 3358889988889999999999 999999999999999999999999642
Q ss_pred -----------HHhcCCcccCCCCCc--hH-----------------------HHHHHhhcCCcc----ccccCcCchHH
Q 006859 408 -----------LAQIGCYVPAHFSTI--RV-----------------------VDRIFTRMGTVD----NLESNSSTFMT 447 (628)
Q Consensus 408 -----------~~~~g~~v~~~~~~i--~~-----------------------~~~~~~~~~~~~----~~~~~~s~~s~ 447 (628)
...+| |+|+....+ .+ ....+..+++.+ ........+|+
T Consensus 88 i~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 166 (267)
T PRK14235 88 IYDPRLDVVELRARVG-MVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG 166 (267)
T ss_pred CcccccchHHHhhceE-EEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 11244 555543211 11 122334445532 34556788999
Q ss_pred HHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 448 EMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 448 ~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|++|+..+++.+ .+|++++||||++|+|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~l~~-~~tiiivtH~~~--~~~~~~d~v 232 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVE-ELIDELRQ-NYTIVIVTHSMQ--QAARVSQRT 232 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHhc-CCeEEEEEcCHH--HHHhhCCEE
Confidence 999888887776 889999999999999986655533 34444544 689999999954 333444444
No 252
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.8e-18 Score=156.91 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=113.5
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHH
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~ 409 (628)
.++.+-.. .++|+++++++. .|++.+|+||||||||||.++|+|.- =.|
T Consensus 8 dLhv~v~~~keILkgvnL~v~--------~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERA 79 (251)
T COG0396 8 DLHVEVEGKKEILKGVNLTVK--------EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERA 79 (251)
T ss_pred eeEEEecCchhhhcCcceeEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHH
Confidence 36666666 599999999999 99999999999999999999999932 356
Q ss_pred hcCCcc----cCCCCCc------------------------hHHHHHHhhcCCcc-ccccCcC-chHHHHHHHHHHHHhC
Q 006859 410 QIGCYV----PAHFSTI------------------------RVVDRIFTRMGTVD-NLESNSS-TFMTEMKETAFVMQNV 459 (628)
Q Consensus 410 ~~g~~v----~~~~~~i------------------------~~~~~~~~~~~~~~-~~~~~~s-~~s~~~~~~~~i~~~~ 459 (628)
..|.|+ |++-.-+ ......+..+++.+ .+++.+. .||+|.+++..++|.+
T Consensus 80 r~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~ 159 (251)
T COG0396 80 RAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL 159 (251)
T ss_pred hcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence 667655 2221111 11222344556554 3344333 4999999999999987
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
..|+++|||||-+|.|. |...+....++.+.+.+..++++||+.++.++..
T Consensus 160 ~lePkl~ILDE~DSGLDI-dalk~V~~~i~~lr~~~~~~liITHy~rll~~i~ 211 (251)
T COG0396 160 LLEPKLAILDEPDSGLDI-DALKIVAEGINALREEGRGVLIITHYQRLLDYIK 211 (251)
T ss_pred hcCCCEEEecCCCcCccH-HHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcC
Confidence 78999999999999997 5666666678888888999999999988887664
No 253
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.77 E-value=6.8e-18 Score=170.21 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=108.3
Q ss_pred CEEEEc--CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHh
Q 006859 353 PLAIDG--GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~--~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~ 410 (628)
++++.| +..++++++++.+. +|++++|+||||||||||+++|+|+. +...
T Consensus 7 nls~~~~~~~~~~l~~isl~I~--------~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 7 DLTAKYTEGGNAVLENISFSIS--------PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred EEEEEeCCCCCcceeceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhh
Confidence 477777 56789999999999 99999999999999999999999964 2234
Q ss_pred cCCcccCCCCCch----------------HHHHHHhhcCCccccccCcCc-----------hHHHHHHHHHHHHhC-CCC
Q 006859 411 IGCYVPAHFSTIR----------------VVDRIFTRMGTVDNLESNSST-----------FMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 411 ~g~~v~~~~~~i~----------------~~~~~~~~~~~~~~~~~~~s~-----------~s~~~~~~~~i~~~~-~~~ 462 (628)
+| |+|++...++ .....+..+|+.+.+...+.. +|+|++|+..+++++ .+|
T Consensus 79 i~-~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FG-VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EE-EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 56 7776653221 112334556666555554443 999999988888776 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++++|||+++.|+.....+...+. .+ ..++|++++||+++... . ++++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~-~~-~~~~tii~isH~~~~i~--~-~dri 206 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLK-QA-FADCTVILSEHRIEAML--E-CQRF 206 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHH-Hh-cCCCEEEEEECCHHHHH--h-CCEE
Confidence 9999999999998865554433333 23 24799999999965443 2 5555
No 254
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.76 E-value=7.8e-18 Score=167.54 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=103.2
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+. +.
T Consensus 5 ~l~~~~~~~~~~~~l~~i~~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 5 NVSFRYPSRPDVPILKGLSLTIP--------PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred EEEEecCCCCCccceeceEEEec--------CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHH
Confidence 36777753 478999999998 99999999999999999999999953 12
Q ss_pred HhcCCcccCCCCCc--hHHH---------------HHHhhc-----------CCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHFSTI--RVVD---------------RIFTRM-----------GTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~~~i--~~~~---------------~~~~~~-----------~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| |+|+....+ .+.+ ...... +...........+|+|++++..+++.+
T Consensus 77 ~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~ 155 (238)
T cd03249 77 SQIG-LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL 155 (238)
T ss_pred hhEE-EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh
Confidence 2355 665543211 1111 011111 122233445678999999988888766
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+|+++++|||++|+|+.....+.. ++..+. .+.+++++||+.+... .++++
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~-~g~~vi~~sh~~~~~~---~~d~v 207 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQE-ALDRAM-KGRTTIVIAHRLSTIR---NADLI 207 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHH-HHHHhc-CCCEEEEEeCCHHHHh---hCCEE
Confidence 7899999999999999866555433 444444 6899999999966544 35554
No 255
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.6e-18 Score=189.58 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=107.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HH--HhcCCcccCCCCCc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------IL--AQIGCYVPAHFSTI 422 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~--~~~g~~v~~~~~~i 422 (628)
++++.|+.+++++++++++. +|++++|+||||||||||||+|+|+. +. ..+| |+|+.....
T Consensus 6 ~ls~~~~~~~il~~vsl~i~--------~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~~ 76 (530)
T PRK15064 6 NITMQFGAKPLFENISVKFG--------GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLG-KLRQDQFAF 76 (530)
T ss_pred EEEEEeCCcEeEeCCEEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccCCcC
Confidence 48888988899999999999 99999999999999999999999953 11 1234 444332100
Q ss_pred --------------------------------------------------------hHHHHHHhhcCCcccc-ccCcCch
Q 006859 423 --------------------------------------------------------RVVDRIFTRMGTVDNL-ESNSSTF 445 (628)
Q Consensus 423 --------------------------------------------------------~~~~~~~~~~~~~~~~-~~~~s~~ 445 (628)
..+..++..+|+.+.. .+..+++
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 0122345556665433 3567899
Q ss_pred HHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 446 MTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 446 s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+|++|+..+++.+ .+|++++||||+.|+|+..... +.+.+.+.+.+++++||+.+ .+...++++
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~----l~~~l~~~~~tiiivsHd~~--~~~~~~d~i 222 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRW----LEDVLNERNSTMIIISHDRH--FLNSVCTHM 222 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHH----HHHHHHhCCCeEEEEeCCHH--HHHhhcceE
Confidence 99999988888776 7899999999988887754333 44445566899999999955 333444444
No 256
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.76 E-value=5.1e-18 Score=175.18 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=122.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch--------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR-------- 423 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~-------- 423 (628)
..+++.|++..+.+++++++. +|++++|+|.||||||||+++|.| ++.|++|++.
T Consensus 8 ~~itK~f~~~~And~V~l~v~--------~GeIHaLLGENGAGKSTLm~iL~G---------~~~P~~GeI~v~G~~v~~ 70 (501)
T COG3845 8 RGITKRFPGVVANDDVSLSVK--------KGEIHALLGENGAGKSTLMKILFG---------LYQPDSGEIRVDGKEVRI 70 (501)
T ss_pred eccEEEcCCEEecCceeeeec--------CCcEEEEeccCCCCHHHHHHHHhC---------cccCCcceEEECCEEecc
Confidence 358999999999999999999 999999999999999999999999 4444433322
Q ss_pred -------------------------------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHH
Q 006859 424 -------------------------------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 424 -------------------------------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~ 454 (628)
....+..++|+.=+.+..++.++.|++|+..
T Consensus 71 ~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 71 KSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE 150 (501)
T ss_pred CCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH
Confidence 2345667788888888899999999999999
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEE
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHF 521 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~ 521 (628)
|+..+ .+++++|||||++-+.|.+...+.. ++..+.+.|++|+++||- |.+....++++....-
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~-~l~~l~~~G~tIi~ITHK--L~Ev~~iaDrvTVLR~ 215 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFE-ILRRLAAEGKTIIFITHK--LKEVMAIADRVTVLRR 215 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecc--HHHHHHhhCeeEEEeC
Confidence 99887 7899999999988888877666444 667888999999999999 6666666666655443
No 257
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.76 E-value=8.3e-18 Score=168.43 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=101.7
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-H---------------------H--
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-I---------------------L-- 408 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-~---------------------~-- 408 (628)
++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. + .
T Consensus 6 nl~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (248)
T PRK09580 6 DLHVSVEDKAILRGLNLEVR--------PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAG 77 (248)
T ss_pred EEEEEeCCeeeeecceeEEc--------CCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhh
Confidence 47888888889999999999 99999999999999999999999962 0 0
Q ss_pred HhcCCcccCCCCCch-------------------------------HHHHHHhhcCCc-cccccCcC-chHHHHHHHHHH
Q 006859 409 AQIGCYVPAHFSTIR-------------------------------VVDRIFTRMGTV-DNLESNSS-TFMTEMKETAFV 455 (628)
Q Consensus 409 ~~~g~~v~~~~~~i~-------------------------------~~~~~~~~~~~~-~~~~~~~s-~~s~~~~~~~~i 455 (628)
..+| |+++....++ ..+..+..+++. +....... .+|+|++|+..+
T Consensus 78 ~~i~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 78 EGIF-MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred cceE-EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 1133 4444321110 011122223332 12223333 699999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
++++ .+|+++++|||++|+|+.....+. .++..+.+.+.+++++||+.++..
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~-~~l~~l~~~~~tiii~sH~~~~~~ 209 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVA-DGVNSLRDGKRSFIIVTHYQRILD 209 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCHHHHH
Confidence 7766 889999999999999886555543 344556666899999999966543
No 258
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.76 E-value=1.9e-18 Score=166.08 Aligned_cols=135 Identities=17% Similarity=0.201 Sum_probs=95.1
Q ss_pred CEEEEcCc------cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcc--cCCCCCchH
Q 006859 353 PLAIDGGR------HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV--PAHFSTIRV 424 (628)
Q Consensus 353 ~l~~~~~~------~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v--~~~~~~i~~ 424 (628)
++++.|+. .++++++++++. +|++++|+||||||||||+++|+| .. ++.+|.+.+
T Consensus 8 ~ls~~~~~~~~~~~~~~l~~~~~~i~--------~Ge~~~l~G~nGsGKStLl~~i~G---------l~~~~~~~G~i~~ 70 (194)
T cd03213 8 NLTVTVKSSPSKSGKQLLKNVSGKAK--------PGELTAIMGPSGAGKSTLLNALAG---------RRTGLGVSGEVLI 70 (194)
T ss_pred eeEEEEecCCCcccccceecceEEEc--------CCcEEEEECCCCCCHHHHHHHHhC---------CCCCCCCceEEEE
Confidence 47788865 689999999999 999999999999999999999999 55 444443321
Q ss_pred HHH------HHhhcC-------------Ccccccc--CcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHH
Q 006859 425 VDR------IFTRMG-------------TVDNLES--NSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAI 482 (628)
Q Consensus 425 ~~~------~~~~~~-------------~~~~~~~--~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~ 482 (628)
.+. ....++ ..+++.. ....+|+|++|+..+++++ .+|+++++|||++|+|+.....+
T Consensus 71 ~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 150 (194)
T cd03213 71 NGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV 150 (194)
T ss_pred CCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 110 000000 0111110 0116899999877777665 88999999999999998665554
Q ss_pred HHHHHHHHHhCCcEEEEEcCChh
Q 006859 483 AWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 483 ~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
. .++..+.+.+.+++++||+.+
T Consensus 151 ~-~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 151 M-SLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred H-HHHHHHHhCCCEEEEEecCch
Confidence 3 455555556899999999954
No 259
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2e-18 Score=160.22 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=98.7
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhc
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRM 432 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~ 432 (628)
.+.+.|.+++++.++++++. +|++++|+||||||||||+++|+| .+++..|.+.+.+.-....
T Consensus 4 ~~~~~~~~~~~l~~~~~~i~--------~g~~~~i~G~nGsGKStll~~l~g---------~~~~~~G~i~~~~~~~~~~ 66 (157)
T cd00267 4 NLSFRYGGRTALDNVSLTLK--------AGEIVALVGPNGSGKSTLLRAIAG---------LLKPTSGEILIDGKDIAKL 66 (157)
T ss_pred EEEEEeCCeeeEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhC---------CCCCCccEEEECCEEcccC
Confidence 36777877789999888888 999999999999999999999999 8888888765443211110
Q ss_pred CCccccccCcCc---hHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 433 GTVDNLESNSST---FMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 433 ~~~~~~~~~~s~---~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
. ........+. +|+|++++..+++.+ ..|+++++|||+.|+|......+.. ++..+.+.+.+++++||+.+...
T Consensus 67 ~-~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~-~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 67 P-LEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE-LLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred C-HHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCHHHHH
Confidence 0 0011111222 888988877776655 7899999999999999866555443 44444444789999999965443
No 260
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-17 Score=166.99 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=110.5
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 7 ~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 7 ENLDLFYGENQALKSINLPIP--------ARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred eccEEEECCeeeeecceEEec--------CCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccch
Confidence 347888888889999999999 999999999999999999999999631
Q ss_pred ---HHhcCCcccCCCCCc--hHHH----------------------HHHhhcCCc----cccccCcCchHHHHHHHHHHH
Q 006859 408 ---LAQIGCYVPAHFSTI--RVVD----------------------RIFTRMGTV----DNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 ---~~~~g~~v~~~~~~i--~~~~----------------------~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i~ 456 (628)
...+| |+|+....+ .+.+ ..+..+++. +........+|+|++|+..++
T Consensus 79 ~~~~~~i~-~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 79 ADLRIKVG-MVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred HHHHhhee-EEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 11244 555543211 1111 112223332 234556778999999888888
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+.+ .+|+++++|||++|.|+.....+ ..++..+.+ +.+++++||+.+ .+...++++ +.+.+|++.
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~~-~~tii~~sh~~~--~~~~~~d~i------~~l~~G~i~ 223 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKI-EELMEELKK-NYTIVIVTHSMQ--QARRISDRT------AFFLMGELV 223 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhc-CCeEEEEecCHH--HHHHhCCEE------EEEECCEEE
Confidence 776 78999999999999998655543 335555544 589999999954 444444544 344555554
No 261
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7e-18 Score=169.38 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=106.2
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------------- 407 (628)
-.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 9 TKNLNLWYGEKHALYDITISIP--------KNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred EeeeEEEECCeeeeeeeEEEEC--------CCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 3458889988899999999999 999999999999999999999998521
Q ss_pred -----HHhcCCcccCCCCCc--hH----------------------HHHHHhhcCCc----cccccCcCchHHHHHHHHH
Q 006859 408 -----LAQIGCYVPAHFSTI--RV----------------------VDRIFTRMGTV----DNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 408 -----~~~~g~~v~~~~~~i--~~----------------------~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~ 454 (628)
...+| |+|+....+ .+ ....+..+++. +.+.+....+|+|++|+..
T Consensus 81 ~~~~~~~~i~-~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 81 DVVALRRKIG-MVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred chhhhhceEE-EEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 11233 555443211 00 11122233332 2345667789999998887
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++.+ .+|+++++|||++|.|+.....+ ..++..+.+ +.+++++||+.+ .+...++++
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l-~~~l~~~~~-~~tvii~sh~~~--~~~~~~d~v 218 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKI-EDLIEDLKK-EYTVIIVTHNMQ--QAARVSDYT 218 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhh-CceEEEEEcCHH--HHHhhCCEE
Confidence 77766 78999999999999998665554 334444544 589999999954 333334444
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.8e-18 Score=168.66 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=105.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 8 ~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T PRK14272 8 QDVNIYYGDKQAVKNVNLDVQ--------RGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79 (252)
T ss_pred eeeEEEECCEEeeccceEEEc--------CCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccC
Confidence 458888888899999999999 999999999999999999999999621
Q ss_pred ----HHhcCCcccCCCCCc---hHHHHH----------------------HhhcCC----ccccccCcCchHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI---RVVDRI----------------------FTRMGT----VDNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i---~~~~~~----------------------~~~~~~----~~~~~~~~s~~s~~~~~~~~ 454 (628)
...+| |+|+....+ .+.+.+ +..+++ .+......+.+|+|++|+..
T Consensus 80 ~~~~~~~i~-~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 80 PVAMRRRVG-MVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred HHHhhceeE-EEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 11244 555443211 111111 111221 12335567889999998877
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++++ .+|+++++|||++|.|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sH~~~--~~~~~~d~i 217 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIE-DLMTDLKK-VTTIIIVTHNMH--QAARVSDTT 217 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc-CCeEEEEeCCHH--HHHHhCCEE
Confidence 77665 889999999999999886555433 34444544 689999999955 333444544
No 263
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.7e-18 Score=166.19 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=94.4
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------HH
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------------------LA 409 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------------------~~ 409 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+.. ..
T Consensus 8 ~l~~~~~~~~~~~~~l~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 8 NLNYTVPVKGGKRQLLNNISGYVK--------PGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQR 79 (192)
T ss_pred eeEEEecCCCCceEeEEccEEEEe--------CCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhh
Confidence 46777754 679999999999 999999999999999999999999321 11
Q ss_pred hcCCcccCCCCCc---hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHH
Q 006859 410 QIGCYVPAHFSTI---RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWS 485 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~ 485 (628)
.+| |+++....+ .+.+.+.. + .....+|+|++|+..+++++ .+|+++++|||++|.|+.....+ ..
T Consensus 80 ~i~-~~~q~~~~~~~~tv~~~l~~--~------~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~ 149 (192)
T cd03232 80 STG-YVEQQDVHSPNLTVREALRF--S------ALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VR 149 (192)
T ss_pred ceE-EecccCccccCCcHHHHHHH--H------HHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HH
Confidence 233 343332111 11111110 0 00016899999887777665 88999999999999998665553 44
Q ss_pred HHHHHHhCCcEEEEEcCChh
Q 006859 486 CCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 486 ~~~~l~~~~~~vi~~tH~~~ 505 (628)
++..+.+.+.+++++||+.+
T Consensus 150 ~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 150 FLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHcCCEEEEEEcCCh
Confidence 55556666899999999965
No 264
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.3e-18 Score=191.90 Aligned_cols=141 Identities=21% Similarity=0.249 Sum_probs=102.4
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------H-H--hcCCcccCCC---
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------L-A--QIGCYVPAHF--- 419 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------~-~--~~g~~v~~~~--- 419 (628)
++++.||.+++++++++++. +|++++|+||||||||||||+|+|..- + . .+| |+++..
T Consensus 6 nls~~~g~~~~l~~vs~~i~--------~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~-~~~q~~~~~ 76 (638)
T PRK10636 6 SLQIRRGVRVLLDNATATIN--------PGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLA-WVNQETPAL 76 (638)
T ss_pred EEEEEeCCceeecCcEEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEecCCCCC
Confidence 48899999999999999999 999999999999999999999999430 0 0 012 222210
Q ss_pred -CC-ch---------------------------------------------HHHHHHhhcCCc-cccccCcCchHHHHHH
Q 006859 420 -ST-IR---------------------------------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKE 451 (628)
Q Consensus 420 -~~-i~---------------------------------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~ 451 (628)
.. +. .+..++..+|+. +...+.+++||+|+++
T Consensus 77 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 77 PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 00 00 112234556665 3567788999999999
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 452 TAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 452 ~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
+..+++.+ .+|+++|||||++|+|+. ... .+.+.+.+.+.+++++||+.++
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~---~~~-~L~~~L~~~~~tviivsHd~~~ 208 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLD---AVI-WLEKWLKSYQGTLILISHDRDF 208 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHH---HHH-HHHHHHHhCCCeEEEEeCCHHH
Confidence 88888776 789999999997776653 322 2556666667899999999554
No 265
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.76 E-value=6e-18 Score=169.11 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=108.1
Q ss_pred cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCcccCCCCCc
Q 006859 363 ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCYVPAHFSTI 422 (628)
Q Consensus 363 ~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~v~~~~~~i 422 (628)
+++++++++. +|++++|+||||||||||+++|+|+. ....+| |+|+.....
T Consensus 11 ~l~~vsl~i~--------~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~-~v~q~~~~~ 81 (248)
T PRK03695 11 RLGPLSAEVR--------AGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRA-YLSQQQTPP 81 (248)
T ss_pred eecceEEEEc--------CCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheE-EecccCccC
Confidence 6777777777 99999999999999999999999963 112345 665542110
Q ss_pred ---h--------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCC--------CCcEEEEeCCC
Q 006859 423 ---R--------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS--------ERSLIVMDELG 471 (628)
Q Consensus 423 ---~--------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~--------~~~l~llDE~~ 471 (628)
. ..+.++..+++.+...+....+|+|++|+..+++++. +|+++++|||+
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt 161 (248)
T PRK03695 82 FAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM 161 (248)
T ss_pred CCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCc
Confidence 0 1245566778877778888999999999888887773 56999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|+|+.....+. .++..+.+.+.+++++||+.+ .+...++.+ +.+.+|+++
T Consensus 162 ~~LD~~~~~~l~-~~L~~~~~~~~tvi~~sH~~~--~~~~~~d~i------~~l~~G~i~ 212 (248)
T PRK03695 162 NSLDVAQQAALD-RLLSELCQQGIAVVMSSHDLN--HTLRHADRV------WLLKQGKLL 212 (248)
T ss_pred ccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHH--HHHHhCCEE------EEEECCEEE
Confidence 999987655543 445555556899999999954 333344444 344555554
No 266
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1e-17 Score=168.06 Aligned_cols=152 Identities=15% Similarity=0.209 Sum_probs=106.9
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 8 ~~l~~~~~~~~~l~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 8 KNLNLWYGEKQALNDINLPIY--------ENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred EEeEEEECCeeeeeceeEEEc--------CCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 348888888889999999998 999999999999999999999999521
Q ss_pred ----HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|++...+ .+. ...+..+++. +........+|+|++|+..+
T Consensus 80 ~~~~~~~i~-~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 80 VVELRKRVG-MVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred HHHHHhheE-EEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 11244 555543211 111 1223334432 23456778899999988877
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++.+ .+|+++++|||++|+|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~~~-~~tiiivsH~~~--~~~~~~d~v 216 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIE-DLMVELKK-EYTIVIVTHNMQ--QASRVSDYT 216 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh-CCeEEEEEcCHH--HHHHhcCEE
Confidence 7665 789999999999999986655543 34444444 589999999954 333334544
No 267
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.2e-18 Score=170.95 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=107.8
Q ss_pred CCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------------------
Q 006859 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------------------- 407 (628)
Q Consensus 350 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------------------- 407 (628)
...++.+.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 22 ~~~nl~~~~~~~~~l~~vs~~i~--------~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 22 EVEGVKVFYGGFLALVDVHLKIP--------AKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred EEeeEEEEeCCeEEEeeeeeEEc--------CCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 34458889988889999999999 999999999999999999999998531
Q ss_pred ------HHhcCCcccCCCCCc--hHHH--------------------HHHhhcCC----ccccccCcCchHHHHHHHHHH
Q 006859 408 ------LAQIGCYVPAHFSTI--RVVD--------------------RIFTRMGT----VDNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ------~~~~g~~v~~~~~~i--~~~~--------------------~~~~~~~~----~~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+ .+.+ ..+..+++ .+........+|+|++|+..+
T Consensus 94 ~~~~~~~~~i~-~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 94 INSVKLRRQVG-MVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred chhHHHhhcEE-EEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 12344 666543211 1111 11222333 233456778899999988877
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++|+|||++|+|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tiii~sH~~~--~~~~~~d~i 230 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEE-LCLELKE-QYTIIMVTHNMQ--QASRVADWT 230 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHH--HHHHhCCEE
Confidence 7766 8899999999999999866555444 4444444 689999999954 333344544
No 268
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=8.1e-18 Score=167.23 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=100.2
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
.+.+.|+ .+++++++++++. +|++++|+||||||||||+++|+|+. +...
T Consensus 5 ~l~~~~~~~~~~l~~i~~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 5 NVTFAYDPGRPVLKDVSFTIP--------AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred EEEEEeCCCCceeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 3677775 5678999999998 99999999999999999999999954 1123
Q ss_pred cCCcccCCCCCc--hHH---------------HHHHhhcCCc-----------cccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTI--RVV---------------DRIFTRMGTV-----------DNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i--~~~---------------~~~~~~~~~~-----------~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+| |+|+....+ .+. .......++. .........+|+|++++..+++++ .+
T Consensus 77 i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 77 IG-VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred EE-EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 45 555443211 111 1111111221 122334567999999888777766 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
|+++++|||++|.|+.....+. .++..+.+ +.+++++||+.+...
T Consensus 156 p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tiii~sh~~~~~~ 200 (236)
T cd03253 156 PPILLLDEATSALDTHTEREIQ-AALRDVSK-GRTTIVIAHRLSTIV 200 (236)
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHhcC-CCEEEEEcCCHHHHH
Confidence 9999999999999986655543 34444555 889999999966543
No 269
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.2e-17 Score=148.65 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=110.6
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch-
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR- 423 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~- 423 (628)
+|.+. ...++..||...--.++++.+. +|++++|+|.+||||||||++|++ -++++.|.+.
T Consensus 4 ~PLL~-V~~lsk~Yg~~~gc~~vsF~l~--------PGeVLgiVGESGSGKtTLL~~is~---------rl~p~~G~v~Y 65 (258)
T COG4107 4 KPLLS-VSGLSKLYGPGKGCRDVSFDLY--------PGEVLGIVGESGSGKTTLLKCISG---------RLTPDAGTVTY 65 (258)
T ss_pred Cccee-ehhhhhhhCCCcCccccceeec--------CCcEEEEEecCCCcHHhHHHHHhc---------ccCCCCCeEEE
Confidence 46433 3348888888888888888888 999999999999999999999999 3333333221
Q ss_pred ----------------------------------------------------------------HHHHHHhhcCCc-ccc
Q 006859 424 ----------------------------------------------------------------VVDRIFTRMGTV-DNL 438 (628)
Q Consensus 424 ----------------------------------------------------------------~~~~~~~~~~~~-~~~ 438 (628)
....++.+..+. +.+
T Consensus 66 ~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~Ri 145 (258)
T COG4107 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI 145 (258)
T ss_pred EcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccc
Confidence 112344444443 455
Q ss_pred ccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCc
Q 006859 439 ESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYP 514 (628)
Q Consensus 439 ~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~ 514 (628)
+..+.+||+||+|+..|++++ +.|.|+++|||+.|++..-...+.. ++..+. +.+..++++|||.....+.....
T Consensus 146 DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLD-llrgLv~~l~la~viVTHDl~VarLla~rl 222 (258)
T COG4107 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRELGLAVVIVTHDLAVARLLADRL 222 (258)
T ss_pred cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHH-HHHHHHHhcCceEEEEechhHHHHHhhhcc
Confidence 667889999999999999887 8999999999998888644333322 333333 56899999999988887765443
No 270
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.76 E-value=1.1e-17 Score=168.05 Aligned_cols=148 Identities=20% Similarity=0.218 Sum_probs=104.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-H---------------------HH
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-I---------------------LA 409 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-~---------------------~~ 409 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+++|+|+. + ..
T Consensus 11 ~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 11 KNLHASVNENEILKGLNLSIN--------KGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred EeEEEEeCCEEeeecceeEEc--------CCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 358888887889999999999 99999999999999999999999951 0 01
Q ss_pred hcCC-cccCCCCCc-------------------------------hHHHHHHhhcCCc-cccccCcC-chHHHHHHHHHH
Q 006859 410 QIGC-YVPAHFSTI-------------------------------RVVDRIFTRMGTV-DNLESNSS-TFMTEMKETAFV 455 (628)
Q Consensus 410 ~~g~-~v~~~~~~i-------------------------------~~~~~~~~~~~~~-~~~~~~~s-~~s~~~~~~~~i 455 (628)
+.|. ++|+....+ ......+..+++. ........ .+|+|++|+..+
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 1111 333321100 0012334555654 23455555 599999988887
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
++++ .+|+++++|||++|+|+.....+. .++..+.+.+.+++++||+.++..
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~g~tii~~tH~~~~~~ 215 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTSENSIILITHYQRLLD 215 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEecCHHHHH
Confidence 7766 889999999999999986655544 444445556899999999966543
No 271
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.3e-17 Score=169.27 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=108.3
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------------- 407 (628)
-.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 24 i~nl~~~~~~~~il~~vs~~i~--------~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 24 AVNLTLGFAGKTVLDQVSMGFP--------ARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred EeeEEEEECCEEEeeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 3458999998899999999999 999999999999999999999999631
Q ss_pred ----HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCCcc----ccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTVD----NLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~~----~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+ .+. ...+..+++.. .+......+|+|++|+..+
T Consensus 96 ~~~~~~~i~-~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 96 VLEFRRRVG-MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred hHHHhhheE-EeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 12344 565543211 111 12233445432 2445677899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++.+ .+|+++|+|||+.|.|......+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~-~~tiiivsH~~~--~~~~~~dri 232 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEE-FIRSLAD-RLTVIIVTHNLA--QAARISDRA 232 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHH--HHHHhCCEE
Confidence 8776 7899999999999998865554433 4444444 589999999954 433444444
No 272
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=7.8e-18 Score=149.65 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=117.5
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------------HHHhcCCc
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------------ILAQIGCY 414 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------------~~~~~g~~ 414 (628)
.-++|+++++.+. .|+.++|+||+||||||||-.++|+- --.++| |
T Consensus 22 ~l~IL~~V~L~v~--------~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vG-f 92 (228)
T COG4181 22 ELSILKGVELVVK--------RGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG-F 92 (228)
T ss_pred ceeEeecceEEec--------CCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcccee-E
Confidence 4467888888888 99999999999999999999999953 123566 5
Q ss_pred ccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeC
Q 006859 415 VPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDE 469 (628)
Q Consensus 415 v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE 469 (628)
|+++.-.++ .....+.++|+.+.+...+..+|+|.+|+..+++++ ..|++++-||
T Consensus 93 VFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADE 172 (228)
T COG4181 93 VFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADE 172 (228)
T ss_pred EEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccC
Confidence 554432221 345678899999999999999999999998888877 7899999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCc
Q 006859 470 LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYP 514 (628)
Q Consensus 470 ~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~ 514 (628)
|+-.+|...+..++.-+...-.+.|.|.+++|||+.+...+++..
T Consensus 173 PTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~ 217 (228)
T COG4181 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQL 217 (228)
T ss_pred CCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhee
Confidence 988888877777666555555578999999999988888777664
No 273
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.5e-18 Score=153.57 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=106.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch---------
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR--------- 423 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~--------- 423 (628)
++....+..+++.++++.+. +|+.+.|+||||+|||||||+|+| .+.|++|.+.
T Consensus 7 ~L~~~R~e~~lf~~L~f~l~--------~Ge~~~i~G~NG~GKTtLLRilaG---------Ll~p~~G~v~~~~~~i~~~ 69 (209)
T COG4133 7 NLSCERGERTLFSDLSFTLN--------AGEALQITGPNGAGKTTLLRILAG---------LLRPDAGEVYWQGEPIQNV 69 (209)
T ss_pred hhhhccCcceeecceeEEEc--------CCCEEEEECCCCCcHHHHHHHHHc---------ccCCCCCeEEecCCCCccc
Confidence 46777788889999999999 999999999999999999999999 4444443322
Q ss_pred ----------------------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 424 ----------------------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 424 ----------------------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
-....+..+|+.+..+.+...+|.|++++..+++.. +.+
T Consensus 70 ~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 70 RESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred hhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC
Confidence 123456677888888889999999999999998886 789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
+|.|||||+.+.|. .+.+....++..-...|..|+.+||..
T Consensus 150 pLWiLDEP~taLDk-~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 150 PLWILDEPFTALDK-EGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred CceeecCcccccCH-HHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 99999999888876 444444445544456789999999983
No 274
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.7e-18 Score=168.65 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=110.7
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------------- 407 (628)
..++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFN--------QNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred EEeEEEEECCeeEEecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 3458889988889999999999 999999999999999999999999521
Q ss_pred -----HHhcCCcccCCCCCc--hHHHH----------------------HHhhcCC----ccccccCcCchHHHHHHHHH
Q 006859 408 -----LAQIGCYVPAHFSTI--RVVDR----------------------IFTRMGT----VDNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 408 -----~~~~g~~v~~~~~~i--~~~~~----------------------~~~~~~~----~~~~~~~~s~~s~~~~~~~~ 454 (628)
...+| |+|+....+ .+.+. .+..+++ .+........+|+|++|+..
T Consensus 80 ~~~~~~~~i~-~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 80 DVVQLRKQVG-MVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred cHHHhcCeEE-EEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 01244 555543211 11110 1122232 12345667889999998888
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+++.+ .+|+++|+|||+.|+|+.....+.. ++..+.+ +.+++++||+.+. +...++++ +.+++|+++
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~-~~tii~vsH~~~~--~~~~~d~i------~~l~~G~i~ 226 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIEN-MLLELRD-QYTIILVTHSMHQ--ASRISDKT------AFFLTGNLI 226 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHh-CCEEEEEECCHHH--HHHhCCEE------EEEECCEEE
Confidence 87766 8899999999999999866555433 4444444 5899999999553 33334444 334555554
No 275
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.76 E-value=8.8e-18 Score=174.09 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=109.6
Q ss_pred CCCEEEEcC----ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------------------
Q 006859 351 NGPLAIDGG----RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~----~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------- 407 (628)
..++++.|+ ..++++++++++. +|++++|+|+||||||||+++|+|+.-
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~--------~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLR--------AGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEc--------CCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 345777773 3578999999999 999999999999999999999999541
Q ss_pred --------H-HhcCCcccCCCCC-----ch----------------------HHHHHHhhcCCcc---ccccCcCchHHH
Q 006859 408 --------L-AQIGCYVPAHFST-----IR----------------------VVDRIFTRMGTVD---NLESNSSTFMTE 448 (628)
Q Consensus 408 --------~-~~~g~~v~~~~~~-----i~----------------------~~~~~~~~~~~~~---~~~~~~s~~s~~ 448 (628)
. .++| |+|++... .. .....+..+|+.+ .+.+....+|+|
T Consensus 87 ~~~~~~~~r~~~i~-~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 87 PEKELNKLRAEQIS-MIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred CHHHHHHHhcCCEE-EEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 0 1355 66665410 11 1122344555543 235577889999
Q ss_pred HHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 449 MKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 449 ~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+|+..|++++ .+|+++|+|||++|+|......+.. ++..+.+ .+.+++++||+.+.. ...++++
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~--~~~~Dri 232 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT-LLNELKREFNTAIIMITHDLGVV--AGICDKV 232 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHHcCCEEEEEECCHHHH--HHhCCEE
Confidence 99988888776 8899999999999998866655444 4444544 589999999995543 3344555
No 276
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.1e-18 Score=174.40 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=110.8
Q ss_pred CCEEEEc----CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--------------------
Q 006859 352 GPLAIDG----GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------------------- 407 (628)
Q Consensus 352 ~~l~~~~----~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------------------- 407 (628)
.++++.| +..++++++++++. +|++++|+|+||||||||+++|+|+.-
T Consensus 7 ~~l~~~y~~~~~~~~~l~~vsl~i~--------~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 7 RNLTIEFKTSDGWVKAVDRVSMTLT--------EGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eeeEEEEeCCCCCEEEEeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 3477777 44678999999998 999999999999999999999999730
Q ss_pred -----H----HhcCCcccCCCCC-----ch---------------------------HHHHHHhhcCCcc---ccccCcC
Q 006859 408 -----L----AQIGCYVPAHFST-----IR---------------------------VVDRIFTRMGTVD---NLESNSS 443 (628)
Q Consensus 408 -----~----~~~g~~v~~~~~~-----i~---------------------------~~~~~~~~~~~~~---~~~~~~s 443 (628)
. ..+| |+|++... .. .+..++..+|+.+ ...+...
T Consensus 79 ~~~~~~~~~~~~i~-~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~ 157 (330)
T PRK15093 79 SPRERRKLVGHNVS-MIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPY 157 (330)
T ss_pred CHHHHHHHhCCCEE-EEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCch
Confidence 0 1355 66665321 00 1123355566653 3456778
Q ss_pred chHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCccee
Q 006859 444 TFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVK 517 (628)
Q Consensus 444 ~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~ 517 (628)
.+|+||+|+..+++++ .+|+++|+|||++|+|+.....+.. ++..+.+ .+.+++++||+++. ....++++.
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~-lL~~l~~~~g~tii~itHdl~~--v~~~~dri~ 230 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTTILLISHDLQM--LSQWADKIN 230 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCEEEEEECCHHH--HHHhCCEEE
Confidence 8999999988888776 8899999999999998866555443 4444554 58999999999544 444455553
No 277
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=2.6e-18 Score=163.43 Aligned_cols=139 Identities=13% Similarity=0.193 Sum_probs=94.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHH----
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRI---- 428 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~---- 428 (628)
++++.| +++++++++. +|++++|+||||||||||+++|+| ..++.+|++.+.+..
T Consensus 9 ~l~~~~----~l~~vs~~i~--------~G~~~~i~G~nGsGKSTLl~~l~G---------~~~~~~G~i~~~g~~~~~~ 67 (182)
T cd03215 9 GLSVKG----AVRDVSFEVR--------AGEIVGIAGLVGNGQTELAEALFG---------LRPPASGEITLDGKPVTRR 67 (182)
T ss_pred ccEEEe----eecceEEEEc--------CCcEEEEECCCCCCHHHHHHHHhC---------CCCCCCceEEECCEECCcc
Confidence 355555 7888888888 999999999999999999999999 666665544322100
Q ss_pred -----H-hhcC----------------CccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHH
Q 006859 429 -----F-TRMG----------------TVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWS 485 (628)
Q Consensus 429 -----~-~~~~----------------~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~ 485 (628)
. ..++ ..+++... ..+|+|++|+..+++++ .+|+++++|||+.|.|+.....+. .
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~-~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~ 145 (182)
T cd03215 68 SPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS-SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY-R 145 (182)
T ss_pred CHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH-hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHH-H
Confidence 0 0011 01111000 01888999887777666 889999999999999986655544 3
Q ss_pred HHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 486 CCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 486 ~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++..+.+.+.+++++||+.+ .+...++++
T Consensus 146 ~l~~~~~~~~tiii~sh~~~--~~~~~~d~v 174 (182)
T cd03215 146 LIRELADAGKAVLLISSELD--ELLGLCDRI 174 (182)
T ss_pred HHHHHHHCCCEEEEEeCCHH--HHHHhCCEE
Confidence 44555556899999999953 443334444
No 278
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1.4e-17 Score=167.30 Aligned_cols=159 Identities=19% Similarity=0.245 Sum_probs=110.6
Q ss_pred ccccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------------
Q 006859 344 TRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------------- 407 (628)
Q Consensus 344 ~~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------------- 407 (628)
..|.+.- .++++.|++.+++.++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 7 ~~~~i~~-~~~~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 7 AEDVFNI-SRLYLYINDKAILKDITIKIP--------NNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFG 77 (257)
T ss_pred hhhheee-eeEEEecCCceeEeceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECC
Confidence 3455433 348999999999999999999 999999999999999999999999531
Q ss_pred -----------HHhcCCcccCCCCCc---hH----------------------HHHHHhhcCCc----cccccCcCchHH
Q 006859 408 -----------LAQIGCYVPAHFSTI---RV----------------------VDRIFTRMGTV----DNLESNSSTFMT 447 (628)
Q Consensus 408 -----------~~~~g~~v~~~~~~i---~~----------------------~~~~~~~~~~~----~~~~~~~s~~s~ 447 (628)
..++| |+|+....+ .+ ....+..+++. +........+|+
T Consensus 78 ~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~ 156 (257)
T PRK14246 78 KDIFQIDAIKLRKEVG-MVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSG 156 (257)
T ss_pred cccccCCHHHHhcceE-EEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCH
Confidence 11234 555443211 11 11223344553 234556778999
Q ss_pred HHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 448 EMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 448 ~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|++|+..+++++ .+|+++++|||+.|+|......+. .++..+.+ +++++++||+.+. +...++++
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~-~~l~~~~~-~~tiilvsh~~~~--~~~~~d~v 222 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE-KLITELKN-EIAIVIVSHNPQQ--VARVADYV 222 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc-CcEEEEEECCHHH--HHHhCCEE
Confidence 999888887766 889999999999999886555433 34444444 6899999999553 33334444
No 279
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.4e-17 Score=168.81 Aligned_cols=152 Identities=18% Similarity=0.173 Sum_probs=105.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 29 ~nl~~~~~~~~il~~vs~~i~--------~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 29 RNLNLFYGDKQALFDISMRIP--------KNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred EEEEEEECCeeEeeeEEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 357888888889999999999 999999999999999999999999621
Q ss_pred ----HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCCcc----ccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTVD----NLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~~----~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|++...+ .+. ...+..+++.+ ...+....+|+|++|+..+
T Consensus 101 ~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 101 VAELRRRVG-MVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred HHHHhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 11234 555443211 111 11222334321 2345667899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||++|.|+.....+ ..++..+.+ +.+++++||+.+ .+...++++
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l-~~~L~~~~~-~~tiiivtH~~~--~~~~~~d~i 237 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKI-EELITELKS-KYTIVIVTHNMQ--QAARVSDYT 237 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHh-CCeEEEEeCCHH--HHHhhCCEE
Confidence 7765 88999999999999998655543 344444554 689999999954 333334444
No 280
>PLN03073 ABC transporter F family; Provisional
Probab=99.75 E-value=6e-17 Score=183.25 Aligned_cols=143 Identities=14% Similarity=0.132 Sum_probs=103.4
Q ss_pred CCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------HHhcCCcccCCCC
Q 006859 352 GPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------LAQIGCYVPAHFS 420 (628)
Q Consensus 352 ~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------~~~~g~~v~~~~~ 420 (628)
.++++.|+ +.++++++++++. +|++++|+||||||||||||+|+|+.- ...+| |+|+...
T Consensus 512 ~~ls~~y~~~~~il~~vsl~i~--------~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~ 582 (718)
T PLN03073 512 SDASFGYPGGPLLFKNLNFGID--------LDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHV 582 (718)
T ss_pred EeeEEEeCCCCeeEeccEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEecccc
Confidence 45788885 4568999999999 999999999999999999999999531 01244 4444320
Q ss_pred ---Cc-----------------hHHHHHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHH
Q 006859 421 ---TI-----------------RVVDRIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSD 478 (628)
Q Consensus 421 ---~i-----------------~~~~~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~ 478 (628)
.+ ......+..+|+.+ ...++++.+|+|++++..+++.+ .+|+++|||||++|+|+..
T Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s 662 (718)
T PLN03073 583 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662 (718)
T ss_pred ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 00 01223456677763 56778899999999888887765 7899999999988888754
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 479 GFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
... +.+.+.+.+.+++++||+.++.
T Consensus 663 ~~~----l~~~L~~~~gtvIivSHd~~~i 687 (718)
T PLN03073 663 VEA----LIQGLVLFQGGVLMVSHDEHLI 687 (718)
T ss_pred HHH----HHHHHHHcCCEEEEEECCHHHH
Confidence 333 4455554445999999995543
No 281
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.75 E-value=9.4e-18 Score=164.59 Aligned_cols=145 Identities=11% Similarity=0.083 Sum_probs=103.3
Q ss_pred EEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H------------
Q 006859 354 LAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I------------ 407 (628)
Q Consensus 354 l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~------------ 407 (628)
+.+.|+ +.++++++++++. +|++++|+||||||||||+++|+|+. +
T Consensus 6 ~~~~~~~~~~il~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (218)
T cd03290 6 GYFSWGSGLATLSNINIRIP--------TGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRN 77 (218)
T ss_pred eEEecCCCCcceeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhh
Confidence 667775 5678999999999 99999999999999999999999953 0
Q ss_pred HHhcCCcccCCCCCc--hH--------------HHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-
Q 006859 408 LAQIGCYVPAHFSTI--RV--------------VDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i--~~--------------~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
...+| |+++....+ .. ....+..+++.+. +......+|+|++|+..+++.+
T Consensus 78 ~~~i~-~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 78 RYSVA-YAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred cceEE-EEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 01244 555543211 11 1222233333221 2245678999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHH-HHHHHHhCCcEEEEEcCChhHH
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWS-CCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~-~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.+|+++|+|||+.|+|+.....+... +++.+.+.+.+++++||+.+..
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~ 205 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL 205 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH
Confidence 78999999999999998665554442 5666666689999999996654
No 282
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=1.3e-17 Score=163.92 Aligned_cols=145 Identities=14% Similarity=0.209 Sum_probs=102.9
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|+ .+++++++++++. +|++++|+||||||||||+++|+|+. +..
T Consensus 7 ~l~~~~~~~~~~~l~~i~~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 7 NVSLRYRPNLPPVLKNISFSIK--------PGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred EEEEecCCCCcccccceEEEEC--------CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 4677775 3579999999999 99999999999999999999999953 122
Q ss_pred hcCCcccCCCCCch----------------HHHHHHhhcCCcccc-----------ccCcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHFSTIR----------------VVDRIFTRMGTVDNL-----------ESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~~~i~----------------~~~~~~~~~~~~~~~-----------~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
.+| |+|+....+. .....+..+++.+.+ ....+.+|+|++|+..+++++ .+
T Consensus 79 ~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 79 RIS-IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hEE-EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 355 6665432111 112233444444433 246778999999888887766 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
|+++++|||+.|+|+.....+. .++..+.+ +.+++++||+.+...
T Consensus 158 p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tii~~sh~~~~~~ 202 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQ-KTIREAFK-DCTVLTIAHRLDTII 202 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHH-HHHHHhcC-CCEEEEEeCCHHHHh
Confidence 9999999999999986555433 34443433 689999999965443
No 283
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.75 E-value=1.2e-17 Score=164.65 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=107.8
Q ss_pred CEEEEcCc-------cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HH---------
Q 006859 353 PLAIDGGR-------HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------IL--------- 408 (628)
Q Consensus 353 ~l~~~~~~-------~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~--------- 408 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+++|+|+. +.
T Consensus 6 ~l~~~~~~~~~~~~~~~il~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 6 DLSKTFTLHQQGGVRLPVLKNVSLTVN--------AGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA 77 (224)
T ss_pred eeEEEeecccCCCcceEEEecceEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh
Confidence 46777752 478999999999 99999999999999999999999953 10
Q ss_pred ------------HhcCCcccCCCCCch------------------------HHHHHHhhcCCccc-cccCcCchHHHHHH
Q 006859 409 ------------AQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDN-LESNSSTFMTEMKE 451 (628)
Q Consensus 409 ------------~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~-~~~~~s~~s~~~~~ 451 (628)
.++| |+|+.....+ ....++..+|+.+. .......+|+|++|
T Consensus 78 ~~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 78 QASPREVLEVRRKTIG-YVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred hcCHHHHHHHHhcceE-EEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 1244 6665532110 11223455666553 35678889999999
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH-HHhh
Q 006859 452 TAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS-ELAT 511 (628)
Q Consensus 452 ~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~-~~~~ 511 (628)
...+++++ .+|+++++|||+.|.|+.....+.. ++..+.+.+.+++++||+.+.. .+++
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVE-LIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 88888766 7899999999999999866655444 4445555689999999996644 3444
No 284
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.75 E-value=9.8e-18 Score=185.04 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=111.5
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------H
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------L 408 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------~ 408 (628)
++++.|++.++++++++++. +|++++|+||||||||||+|+|+|+.- .
T Consensus 6 ~l~~~~~~~~il~~isl~i~--------~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (500)
T TIGR02633 6 GIVKTFGGVKALDGIDLEVR--------PGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTER 77 (500)
T ss_pred eEEEEeCCeEeecceEEEEe--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 48888888889999999999 999999999999999999999999531 0
Q ss_pred HhcCCcccCCCCC---ch-------------------------HHHHHHhhcCCcccc-ccCcCchHHHHHHHHHHHHhC
Q 006859 409 AQIGCYVPAHFST---IR-------------------------VVDRIFTRMGTVDNL-ESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 409 ~~~g~~v~~~~~~---i~-------------------------~~~~~~~~~~~~~~~-~~~~s~~s~~~~~~~~i~~~~ 459 (628)
..+| |+|+.... .. ....++..+++.+.. .+.++++|+|++|+..+++++
T Consensus 78 ~~i~-~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al 156 (500)
T TIGR02633 78 AGIV-IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL 156 (500)
T ss_pred CCEE-EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence 1245 55544210 00 122345556665443 456889999999988888766
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+|+++++|||++|+|+.....+. .++..+.+.|.+++++||+.+ .+...++++
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviiitHd~~--~~~~~~d~i 211 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILL-DIIRDLKAHGVACVYISHKLN--EVKAVCDTI 211 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCcHH--HHHHhCCEE
Confidence 789999999999999986655543 355556667899999999954 333334444
No 285
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.8e-17 Score=166.10 Aligned_cols=143 Identities=14% Similarity=0.206 Sum_probs=102.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 7 ~~l~~~~~~~~~l~~i~~~i~--------~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~ 78 (250)
T PRK14262 7 ENFSAYYGEKKAVKNVTMKIF--------KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78 (250)
T ss_pred EeeEEEeCCceeEeeeeEeec--------CCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhh
Confidence 348888888889999999999 999999999999999999999998521
Q ss_pred ----HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCCcc----ccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTVD----NLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~~----~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+ ... ...+..+++.+ ........+|+|++|+..+
T Consensus 79 ~~~~~~~i~-~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 79 VTEYRKKVG-MVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HHHhhhhEE-EEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 12344 555443211 111 11122334322 2456677899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
++++ .+|+++++|||++|+|+.....+. .++..+.+ +.+++++||+.+
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~tili~sH~~~ 206 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIE-KLLEELSE-NYTIVIVTHNIG 206 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHH-HHHHHHhc-CcEEEEEeCCHH
Confidence 7776 789999999999999886655543 34444444 689999999955
No 286
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.9e-17 Score=167.17 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=109.0
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------- 407 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------- 407 (628)
.|.+ .-.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 8 ~~~l-~i~~v~~~~~~~~il~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~ 78 (264)
T PRK14243 8 ETVL-RTENLNVYYGSFLAVKNVWLDIP--------KNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN 78 (264)
T ss_pred ceEE-EEeeeEEEECCEEEeecceEEEc--------CCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE
Confidence 3533 33458899988899999999999 999999999999999999999998631
Q ss_pred -----------HHhcCCcccCCCCCc--hHHH--------------------HHHhhcCCc----cccccCcCchHHHHH
Q 006859 408 -----------LAQIGCYVPAHFSTI--RVVD--------------------RIFTRMGTV----DNLESNSSTFMTEMK 450 (628)
Q Consensus 408 -----------~~~~g~~v~~~~~~i--~~~~--------------------~~~~~~~~~----~~~~~~~s~~s~~~~ 450 (628)
..++| |+|+....+ .+.+ ..+..+++. +........+|+|++
T Consensus 79 i~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 157 (264)
T PRK14243 79 LYAPDVDPVEVRRRIG-MVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157 (264)
T ss_pred ccccccChHHHhhhEE-EEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHH
Confidence 11244 555442211 1111 112223332 223456678999999
Q ss_pred HHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 451 ETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 451 ~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+..+++++ .+|+++|+|||++|+|+.....+ ..++..+.+ +.+++++||+. ..+...++++
T Consensus 158 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l-~~~L~~~~~-~~tvi~vtH~~--~~~~~~~d~v 220 (264)
T PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRI-EELMHELKE-QYTIIIVTHNM--QQAARVSDMT 220 (264)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHhc-CCEEEEEecCH--HHHHHhCCEE
Confidence 888888776 78999999999999998665554 334444544 57999999994 4444444554
No 287
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.5e-17 Score=168.43 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=106.7
Q ss_pred CCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------------------
Q 006859 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------------------- 407 (628)
Q Consensus 350 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------------------- 407 (628)
...++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 26 ~~~~l~~~~~~~~il~~vsl~i~--------~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 26 DTQNLNLWYGEDHALKNINLDIH--------ENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred EEeeeEEEECCcceeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 34458899988889999999999 999999999999999999999999631
Q ss_pred ------HHhcCCcccCCCCCc--hHHHHH----------------------Hhhc----CCccccccCcCchHHHHHHHH
Q 006859 408 ------LAQIGCYVPAHFSTI--RVVDRI----------------------FTRM----GTVDNLESNSSTFMTEMKETA 453 (628)
Q Consensus 408 ------~~~~g~~v~~~~~~i--~~~~~~----------------------~~~~----~~~~~~~~~~s~~s~~~~~~~ 453 (628)
...+| |+|++...+ .+.+.+ +..+ ++.+.+......+|+|++|+.
T Consensus 98 ~~~~~~~~~i~-~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 98 YSVEELRTNVG-MVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred ccHHHHhhhEE-EEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 11244 555543211 111111 1111 122234556778999999888
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+++.+ .+|+++++|||++|.|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiiivsH~~~--~i~~~~d~i 236 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEE-LVQELKK-DYSIIIVTHNMQ--QAARISDKT 236 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH-HHHHHHc-CCEEEEEEcCHH--HHHHhCCEE
Confidence 887766 7899999999999999866655444 4444544 689999999954 333334444
No 288
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.9e-17 Score=166.09 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=106.3
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++.+.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 8 ~~l~~~~~~~~il~~~s~~i~--------~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 8 RGVNFFYHKHQVLKNINMDFP--------ERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred EEEEEEECCeeEecceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 348888988889999999999 999999999999999999999999531
Q ss_pred ----HHhcCCcccCCCCCch--HH----------------------HHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTIR--VV----------------------DRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i~--~~----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....++ +. ...+..+++. +...+....+|+|++|+..+
T Consensus 80 ~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 80 VVNLRKRVG-MVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred hHHhhceEE-EEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 01233 5554432111 11 1112223332 23456777899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||++|+|+.....+.. ++..+. .+.+++++||+.+ .+...++++
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~-~~~tilivsh~~~--~~~~~~d~i 216 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEE-LMQELK-QNYTIAIVTHNMQ--QAARASDWT 216 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHh-cCCEEEEEeCCHH--HHHhhCCEE
Confidence 7776 7899999999999999866555433 444444 4789999999954 433444444
No 289
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.3e-17 Score=184.20 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=117.6
Q ss_pred CCEEEEc---CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH---------------------
Q 006859 352 GPLAIDG---GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI--------------------- 407 (628)
Q Consensus 352 ~~l~~~~---~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~--------------------- 407 (628)
.++++.| ++.++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 263 ~~l~~~~~~~~~~~vl~~vsl~i~--------~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 263 RNLTAWDPVNPHIKRVDDVSFSLR--------RGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred ecCccccccccccccccceeeEEc--------CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 3467777 34679999999999 999999999999999999999999631
Q ss_pred --HHhcCCcccCCCC---C---ch--------------------------HHHHHHhhcCCc-cccccCcCchHHHHHHH
Q 006859 408 --LAQIGCYVPAHFS---T---IR--------------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKET 452 (628)
Q Consensus 408 --~~~~g~~v~~~~~---~---i~--------------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~ 452 (628)
...+| |+|+... . .. .+..++.++++. +...+.+.++|+|++|+
T Consensus 335 ~~~~~i~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr 413 (506)
T PRK13549 335 AIAQGIA-MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK 413 (506)
T ss_pred HHHCCCE-EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH
Confidence 11245 6655420 0 00 123445667775 46778889999999998
Q ss_pred HHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 453 AFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 453 ~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
..+++++ .+|++++||||++|.|+.....+ ..++..+.+.|.+++++||+.+ .+...++++ +.+.+|++.
T Consensus 414 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~~g~tvi~~sHd~~--~~~~~~d~v------~~l~~G~i~ 484 (506)
T PRK13549 414 AVLAKCLLLNPKILILDEPTRGIDVGAKYEI-YKLINQLVQQGVAIIVISSELP--EVLGLSDRV------LVMHEGKLK 484 (506)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH-HHHHHHHHHCCCEEEEECCCHH--HHHHhCCEE------EEEECCEEE
Confidence 8888776 78999999999999998665554 4455666667999999999954 444444544 344566665
Q ss_pred E
Q 006859 532 F 532 (628)
Q Consensus 532 ~ 532 (628)
+
T Consensus 485 ~ 485 (506)
T PRK13549 485 G 485 (506)
T ss_pred E
Confidence 3
No 290
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=185.23 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=109.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------H---HhcCCcccCCCC-
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------L---AQIGCYVPAHFS- 420 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------~---~~~g~~v~~~~~- 420 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+.- + ..+| |+|+...
T Consensus 323 ~~l~~~~~~~~~l~~is~~i~--------~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~~~q~~~~ 393 (530)
T PRK15064 323 ENLTKGFDNGPLFKNLNLLLE--------AGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIG-YYAQDHAY 393 (530)
T ss_pred EeeEEeeCCceeecCcEEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEE-EEcccccc
Confidence 357888888889999999999 999999999999999999999999631 0 1345 5555421
Q ss_pred ----Cch----------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHH
Q 006859 421 ----TIR----------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSD 478 (628)
Q Consensus 421 ----~i~----------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~ 478 (628)
... ....++..+++. +...+.++++|+|++|+..+++.+ .+|+++|+|||++|+|+..
T Consensus 394 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 473 (530)
T PRK15064 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473 (530)
T ss_pred cCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 011 123345667773 567788999999999988887766 7899999999988888765
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 479 GFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
... +.+.+.+.+.+++++||+.+.. ...++++
T Consensus 474 ~~~----l~~~l~~~~~tvi~vsHd~~~~--~~~~d~i 505 (530)
T PRK15064 474 IES----LNMALEKYEGTLIFVSHDREFV--SSLATRI 505 (530)
T ss_pred HHH----HHHHHHHCCCEEEEEeCCHHHH--HHhCCEE
Confidence 444 3344444466999999995533 3334444
No 291
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.8e-17 Score=164.74 Aligned_cols=152 Identities=14% Similarity=0.172 Sum_probs=105.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 7 ~~v~~~~~~~~~l~~~s~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 78 (250)
T PRK14266 7 ENLNTYFDDAHILKNVNLDIP--------KNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78 (250)
T ss_pred EeEEEEeCCeEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccccc
Confidence 347888888889999999999 999999999999999999999998621
Q ss_pred ----HHhcCCcccCCCCCch--HH----------------------HHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTIR--VV----------------------DRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i~--~~----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|+....+. .. ...+..+++. +........+|+|++|+..+
T Consensus 79 ~~~~~~~i~-~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 79 VVELRKKVG-MVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI 157 (250)
T ss_pred HHHHhhheE-EEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence 11344 6665432211 11 1112233332 22355677899999988877
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||+.|.|+.....+.. ++..+.+ +.+++++||+.+ .+...+..+
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~tiii~sh~~~--~~~~~~~~i 215 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIED-LIHKLKE-DYTIVIVTHNMQ--QATRVSKYT 215 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEECCHH--HHHhhcCEE
Confidence 7766 7899999999999999865555433 4444443 789999999954 444434433
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.74 E-value=1.9e-17 Score=183.87 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=111.2
Q ss_pred CCEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH-------------------
Q 006859 352 GPLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL------------------- 408 (628)
Q Consensus 352 ~~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~------------------- 408 (628)
.++++.|++ +++++++++++. +|++++|+||||||||||+|+|+|+.-.
T Consensus 9 ~~l~~~~~~~~~~~~~l~~isl~i~--------~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 9 ENLSVAFRQQQTVRTVVNDVSLQIE--------AGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eceEEEecCCCCceeeeeceEEEEe--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 458888863 579999999999 9999999999999999999999996310
Q ss_pred -----------HhcCCcccCCCC--Cc---h----------------------HHHHHHhhcCCcc---ccccCcCchHH
Q 006859 409 -----------AQIGCYVPAHFS--TI---R----------------------VVDRIFTRMGTVD---NLESNSSTFMT 447 (628)
Q Consensus 409 -----------~~~g~~v~~~~~--~i---~----------------------~~~~~~~~~~~~~---~~~~~~s~~s~ 447 (628)
.++| |+|++.. .. . .+...+..+|+.+ ..++.++.+|+
T Consensus 81 ~~~~~~~~~~~~~ig-~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 81 ASEQTLRGVRGNKIA-MIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred CCHHHHHHHhcCceE-EEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 1355 6665531 00 0 1123355566654 34678899999
Q ss_pred HHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCccee
Q 006859 448 EMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVK 517 (628)
Q Consensus 448 ~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~ 517 (628)
|++|+..+++++ .+|+++++|||++|+|+.....+.. ++..+.+ .+.+++++||+.+.. ...++++.
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~~--~~~~dri~ 228 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ-LLRELQQELNMGLLFITHNLSIV--RKLADRVA 228 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH-HHHHHHHhcCCeEEEEcCcHHHH--HHhcCEEE
Confidence 999988888776 8899999999999999866555433 4444544 489999999995533 33344443
No 293
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=1.2e-17 Score=185.68 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=108.6
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCCC-
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFST- 421 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~~- 421 (628)
-.++++.|+.. .++++++++. +|++++|+||||||||||+|+|+|+. +-..+| |+|+....
T Consensus 343 ~~~ls~~~~~~-~l~~~s~~i~--------~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~-y~~Q~~~~~ 412 (590)
T PRK13409 343 YPDLTKKLGDF-SLEVEGGEIY--------EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-YKPQYIKPD 412 (590)
T ss_pred EcceEEEECCE-EEEecceEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEE-EecccccCC
Confidence 34477777654 3677777777 99999999999999999999999953 111234 55544211
Q ss_pred --ch----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHH
Q 006859 422 --IR----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAI 482 (628)
Q Consensus 422 --i~----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~ 482 (628)
.. ....++..+++.+..++.++++|+|++|+..+++.+ .+|+++|||||++|+|+.....+
T Consensus 413 ~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l 492 (590)
T PRK13409 413 YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV 492 (590)
T ss_pred CCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 00 123456778888888899999999999988888776 78999999999999998766664
Q ss_pred HHHHHHHHHh-CCcEEEEEcCChhHH
Q 006859 483 AWSCCEHLLS-LKAYTIFASHMENLS 507 (628)
Q Consensus 483 ~~~~~~~l~~-~~~~vi~~tH~~~l~ 507 (628)
.. ++..+.+ .+.+++++||+.++.
T Consensus 493 ~~-~l~~l~~~~g~tviivsHD~~~~ 517 (590)
T PRK13409 493 AK-AIRRIAEEREATALVVDHDIYMI 517 (590)
T ss_pred HH-HHHHHHHhCCCEEEEEeCCHHHH
Confidence 44 4444544 589999999996544
No 294
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.3e-17 Score=166.14 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=106.7
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 11 ~~l~~~~~~~~il~~isl~i~--------~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 11 KDLSFYYNTSKAIEGISMDIY--------RNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred EEEEEEECCeEeecceEEEEc--------CCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 348888888889999999999 999999999999999999999999521
Q ss_pred ----HHhcCCcccCCCCCc--hH----------------------HHHHHhhcCC----ccccccCcCchHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RV----------------------VDRIFTRMGT----VDNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~----------------------~~~~~~~~~~----~~~~~~~~s~~s~~~~~~~~i 455 (628)
...+| |+|++...+ .+ ....+..+++ .+........+|+|++|+..+
T Consensus 83 ~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 83 INRLRRQIG-MVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred hHhhhhheE-EEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 11244 555443211 11 1122233344 234556677899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++++ .+|+++++|||++|.|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~-~~tiii~tH~~~--~i~~~~d~i 219 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEE-LIHSLRS-ELTIAIVTHNMQ--QATRVSDFT 219 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHhc-CCEEEEEeCCHH--HHHHhcCeE
Confidence 7776 7899999999999999866555433 4444444 589999999944 444444544
No 295
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=4.4e-18 Score=154.55 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=122.0
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
-..++++|++..++.++++.+. +|+.-+|+|||||||||++..|+|-. -.|
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~--------~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IA 79 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVD--------PGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79 (249)
T ss_pred EeceEEEEcceeeeeeeEEEec--------CCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHH
Confidence 3459999999999999999999 99999999999999999999999932 122
Q ss_pred hcCC-cccCCC--------------------------------CCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHH
Q 006859 410 QIGC-YVPAHF--------------------------------STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 410 ~~g~-~v~~~~--------------------------------~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~ 456 (628)
++|. --++.+ ..-...+.++..+|+.+......+.+|-|++|+..|-
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhh
Confidence 2221 000000 0001446778888888888888999999999998887
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCe
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~ 529 (628)
..+ .+|.++++|||.+|....+....+ .++..++ .++.++++-||+++... ....|..+|-+-+..+|.
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la-~~hsilVVEHDM~Fvr~--~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLA-GKHSILVVEHDMGFVRE--IADKVTVLHEGSVLAEGS 229 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHH-HHHHHHh-cCceEEEEeccHHHHHH--hhheeEEEeccceeeccc
Confidence 665 789999999999998765544422 2344333 46899999999776543 336787888776665544
No 296
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.74 E-value=2.3e-17 Score=183.09 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=114.0
Q ss_pred cCCCCEEEEcC-----------ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------
Q 006859 349 TENGPLAIDGG-----------RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------- 406 (628)
Q Consensus 349 ~~~~~l~~~~~-----------~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------- 406 (628)
.+..++++.|+ .+++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~--------~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~ 347 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLR--------PGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQ 347 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEc--------CCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCE
Confidence 34455888885 3678999999999 99999999999999999999999963
Q ss_pred -H-----------HHhcCCcccCCCC--C---ch-----------------------HHHHHHhhcCCc-cccccCcCch
Q 006859 407 -I-----------LAQIGCYVPAHFS--T---IR-----------------------VVDRIFTRMGTV-DNLESNSSTF 445 (628)
Q Consensus 407 -~-----------~~~~g~~v~~~~~--~---i~-----------------------~~~~~~~~~~~~-~~~~~~~s~~ 445 (628)
+ ...+| |+|++.. . .. .+..++..+++. +...+.++++
T Consensus 348 ~i~~~~~~~~~~~~~~i~-~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 426 (529)
T PRK15134 348 PLHNLNRRQLLPVRHRIQ-VVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEF 426 (529)
T ss_pred EccccchhhHHHhhhceE-EEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccC
Confidence 0 12356 6665531 0 00 112345667775 4567888999
Q ss_pred HHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 446 MTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 446 s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+|++|+..+++++ .+|+++|+|||++|.|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tvi~vsHd~~--~~~~~~d~i 496 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA-LLKSLQQKHQLAYLFISHDLH--VVRALCHQV 496 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHH-HHHHHHHhhCCEEEEEeCCHH--HHHHhcCeE
Confidence 99999988888776 7899999999999999876666444 4444544 5899999999954 333444544
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=1.5e-17 Score=185.26 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=103.2
Q ss_pred CCCCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------HHhcCCcccCC
Q 006859 350 ENGPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------LAQIGCYVPAH 418 (628)
Q Consensus 350 ~~~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------~~~~g~~v~~~ 418 (628)
+-.++++.|+ ++++++++++++. +|++++|+||||||||||||+|+|+.- -.++| |+|+.
T Consensus 8 ~i~~l~~~y~~~~~il~~vs~~i~--------~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~-~v~Q~ 78 (556)
T PRK11819 8 TMNRVSKVVPPKKQILKDISLSFF--------PGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG-YLPQE 78 (556)
T ss_pred EEeeEEEEeCCCCeeeeCceEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEecC
Confidence 3456999998 7899999999999 999999999999999999999999531 12344 55554
Q ss_pred CCCc---hHHHH---------------------------------------------------------HHhhcCCcccc
Q 006859 419 FSTI---RVVDR---------------------------------------------------------IFTRMGTVDNL 438 (628)
Q Consensus 419 ~~~i---~~~~~---------------------------------------------------------~~~~~~~~~~~ 438 (628)
.... .+.+. ++..+|+. ..
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~ 157 (556)
T PRK11819 79 PQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PW 157 (556)
T ss_pred CCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cc
Confidence 3211 11111 12223332 24
Q ss_pred ccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 439 ESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 439 ~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.+..+.+|+|++++..+++++ .+|+++|||||++|+|+..... +.+.+.+.+.+++++||+.+..
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~----l~~~L~~~~~tviiisHd~~~~ 223 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAW----LEQFLHDYPGTVVAVTHDRYFL 223 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHH----HHHHHHhCCCeEEEEeCCHHHH
Confidence 667889999999988888776 7899999999988887744333 4444555456999999995533
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.74 E-value=2e-17 Score=183.28 Aligned_cols=154 Identities=10% Similarity=0.111 Sum_probs=111.4
Q ss_pred CCCEEEEcC-----ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------H----------
Q 006859 351 NGPLAIDGG-----RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------I---------- 407 (628)
Q Consensus 351 ~~~l~~~~~-----~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~---------- 407 (628)
..++++.|+ .+++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~--------~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVK--------EGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc
Confidence 345788884 3578999999999 99999999999999999999999953 1
Q ss_pred ----------HHhcCCcccCCCCCc---h--------------------HHHHHHhhcCCcc-----ccccCcCchHHHH
Q 006859 408 ----------LAQIGCYVPAHFSTI---R--------------------VVDRIFTRMGTVD-----NLESNSSTFMTEM 449 (628)
Q Consensus 408 ----------~~~~g~~v~~~~~~i---~--------------------~~~~~~~~~~~~~-----~~~~~~s~~s~~~ 449 (628)
...+| |+|+....+ . .+..++..+++.+ ...+.+..+|+|+
T Consensus 354 ~~~~~~~~~~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 354 KPGPDGRGRAKRYIG-ILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGE 432 (520)
T ss_pred ccchhhHHHHhhhEE-EEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHH
Confidence 01255 666653211 0 0123455677753 4677889999999
Q ss_pred HHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 450 KETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 450 ~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+..+++++ .+|+++|+|||++|+|+.....+.. ++..+. +.+.+++++||+.+ .+...++++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~-~l~~l~~~~g~tvi~vsHd~~--~~~~~~d~i 498 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH-SILKAREEMEQTFIIVSHDMD--FVLDVCDRA 498 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCcEEEEEeCCHH--HHHHhCCEE
Confidence 9988888766 7899999999999999876666444 444444 45899999999954 333444544
No 299
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.5e-17 Score=164.91 Aligned_cols=153 Identities=14% Similarity=0.187 Sum_probs=105.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH-----------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL----------------------- 408 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~----------------------- 408 (628)
.++++.|++.++++++++++. +|++++|+||||||||||+++|+|+.-.
T Consensus 11 ~nl~~~~~~~~il~~is~~i~--------~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 11 NNLSFYYDTQKILEGVSMEIY--------QSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred eeEEEEeCCeeEeeceEEEEc--------CCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 458888887789999999999 9999999999999999999999996310
Q ss_pred -----HhcCCcccCCCCCc--hHH----------------------HHHHhhcCCc----cccccCcCchHHHHHHHHHH
Q 006859 409 -----AQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTV----DNLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 409 -----~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i 455 (628)
..+| |+|+....+ .+. ...+..+++. +...+....+|+|++|+..+
T Consensus 83 ~~~~~~~i~-~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 83 LNRLRRQVS-MVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred hHHhhccEE-EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 1133 444332111 111 1122233432 23456667899999988888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++.+ .+|+++++|||++|.|+.....+.. .+..+. +.+.+++++||+.+ .+...++++
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~-~l~~l~~~~~~tiiivsH~~~--~i~~~~d~i 221 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVES-LIQSLRLRSELTMVIVSHNLH--QVSRLSDFT 221 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEECCHH--HHHHhcCEE
Confidence 7766 7899999999999998865554333 444444 35899999999954 444444544
No 300
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.5e-17 Score=185.60 Aligned_cols=154 Identities=18% Similarity=0.116 Sum_probs=112.8
Q ss_pred CCCEEEEcCc-----------cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------
Q 006859 351 NGPLAIDGGR-----------HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------- 406 (628)
Q Consensus 351 ~~~l~~~~~~-----------~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------- 406 (628)
..++++.|+. .++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~--------~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 387 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLW--------PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEc--------CCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 3457788751 468888888888 99999999999999999999999963
Q ss_pred -----------HHHhcCCcccCCCC--Cc---h----------------------HHHHHHhhcCCc-cccccCcCchHH
Q 006859 407 -----------ILAQIGCYVPAHFS--TI---R----------------------VVDRIFTRMGTV-DNLESNSSTFMT 447 (628)
Q Consensus 407 -----------~~~~~g~~v~~~~~--~i---~----------------------~~~~~~~~~~~~-~~~~~~~s~~s~ 447 (628)
+..++| |+|++.. .. . .+..++..+|+. +...+.+..+|+
T Consensus 388 i~~~~~~~~~~~~~~i~-~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSg 466 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQ-FIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSG 466 (623)
T ss_pred CCcCCHHHHHHhcCCeE-EEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCH
Confidence 012466 7766531 10 0 112345667875 557788899999
Q ss_pred HHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 448 EMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 448 ~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|++|+..+++++ .+|+++|+|||++|+|+.....+.. ++..+.+ .+.+++++||+.+ .+...++++
T Consensus 467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~-ll~~l~~~~g~tvi~isHdl~--~v~~~~dri 534 (623)
T PRK10261 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN-LLLDLQRDFGIAYLFISHDMA--VVERISHRV 534 (623)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE
Confidence 999988888776 7899999999999999866665444 4444444 5899999999954 444445555
No 301
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.74 E-value=1.6e-17 Score=201.60 Aligned_cols=154 Identities=14% Similarity=0.176 Sum_probs=118.9
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHh
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~ 410 (628)
++++.|++ +++++++++.+. +|++++|+||||||||||+|+|+|+. ...+
T Consensus 1942 nLsK~Y~~~~~~aL~~ISf~I~--------~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1942 ELTKVYSGTSSPAVDRLCVGVR--------PGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred EEEEEECCCCceEEEeeEEEEc--------CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 46777875 578999988888 99999999999999999999999953 2345
Q ss_pred cCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 411 IGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 411 ~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
+| |+|+..+... .++.++..+++.+..++..+++|+|++|+..++.++ .+|+++
T Consensus 2014 IG-y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2014 MG-YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EE-EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 77 7777643211 123446667888888888999999999887777665 889999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeE
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKI 518 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~ 518 (628)
+||||+.|.|+..... .+.++..+.+.|++++++||+ +.+....++++..
T Consensus 2093 LLDEPTsGLDp~sr~~-l~~lL~~l~~~g~TIILtTH~--mee~e~lcDrV~I 2142 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRM-LWNTIVSIIREGRAVVLTSHS--MEECEALCTRLAI 2142 (2272)
T ss_pred EEECCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEeCC--HHHHHHhCCEEEE
Confidence 9999999999976655 455666666668999999999 4455555666633
No 302
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3.1e-17 Score=167.11 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=104.5
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 43 ~~l~~~~~~~~il~~is~~i~--------~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 43 RDLNVFYGDEQALDDVSMDIP--------ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred EEEEEEECCEeeEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 358888888889999999999 999999999999999999999999631
Q ss_pred ----HHhcCCcccCCCCCc--hH--------------------HHHHHhhcCCc----cccccCcCchHHHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFSTI--RV--------------------VDRIFTRMGTV----DNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~--------------------~~~~~~~~~~~----~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
...+| |+|+....+ .+ +...+..+++. +.+....+.+|+|++|+..+++
T Consensus 115 ~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAr 193 (285)
T PRK14254 115 PVALRRRIG-MVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193 (285)
T ss_pred hHhhhccEE-EEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHH
Confidence 11234 555443211 11 11223345543 3456677899999998888877
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
++ .+|+++|||||++|+|+.....+ ..++..+.+ +.+++++||+.+.
T Consensus 194 aL~~~p~lLLLDEPts~LD~~~~~~l-~~~L~~~~~-~~tiii~tH~~~~ 241 (285)
T PRK14254 194 AIAPDPEVILMDEPASALDPVATSKI-EDLIEELAE-EYTVVIVTHNMQQ 241 (285)
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHHH
Confidence 66 78999999999999998655544 344444544 4799999999554
No 303
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3e-17 Score=165.91 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=106.2
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------------- 407 (628)
-.++++.|+++++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 19 ~~~l~~~~~~~~vl~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 19 VNKLNFYYGGYQALKNINMMVH--------EKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred EEEEEEEECCeeeeeeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3458889988889999999999 999999999999999999999999531
Q ss_pred -------HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCCc----cccccCcCchHHHHHHH
Q 006859 408 -------LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGTV----DNLESNSSTFMTEMKET 452 (628)
Q Consensus 408 -------~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~~----~~~~~~~s~~s~~~~~~ 452 (628)
...+| |+|+....+ .+. ...+..+++. +...+....+|+|++++
T Consensus 91 ~~~~~~~~~~i~-~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 91 EVDPIEVRMRIS-MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred ccCHHHHhccEE-EEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 11234 555543211 110 1112233331 23445677899999988
Q ss_pred HHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 453 AFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 453 ~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
..+++++ .+|+++++|||+.|.|+.....+. .++..+.+ +.+++++||+.+ .+...++++
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~-~~tiiivth~~~--~~~~~~d~i 230 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIE-ELISDLKN-KVTILIVTHNMQ--QAARVSDYT 230 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHh-CCEEEEEecCHH--HHHHhCCEE
Confidence 8887765 889999999999999986555433 34444544 689999999954 333334444
No 304
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.74 E-value=8.4e-17 Score=179.98 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=109.2
Q ss_pred CCEEEEcCcc--CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 352 GPLAIDGGRH--PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 352 ~~l~~~~~~~--~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
.+++++|+.. ++|+++++++. +|++++|+|+||||||||+|++.|+. +.
T Consensus 475 ~nvsf~y~~~~~~vL~~isL~I~--------~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 475 ENVSFRYGPDDPPVLEDLSLEIP--------PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred EEEEEEeCCCCcchhhceeEEeC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 3588899877 69999999999 99999999999999999999999953 66
Q ss_pred HhcCCcccCCC----CCchH----------HHHH---HhhcC-----------CccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHF----STIRV----------VDRI---FTRMG-----------TVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~----~~i~~----------~~~~---~~~~~-----------~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.|+| +||++. |++.. .+++ ....| .+..+..+-+.+|+|+||+..+++++
T Consensus 547 ~~ig-~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 547 RQVG-YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred hhee-EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 7888 888765 22220 0111 11222 23334455667999999999999887
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh--CCcEEEEEcCChhHHHHhhh
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS--LKAYTIFASHMENLSELATI 512 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~--~~~~vi~~tH~~~l~~~~~~ 512 (628)
.+|++++|||++++.|+.... .+.+.+.+ .++|++++||.+.....+++
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~----~I~~~L~~~~~~~T~I~IaHRl~ti~~adr 676 (709)
T COG2274 626 SKPKILLLDEATSALDPETEA----IILQNLLQILQGRTVIIIAHRLSTIRSADR 676 (709)
T ss_pred cCCCEEEEeCcccccCHhHHH----HHHHHHHHHhcCCeEEEEEccchHhhhccE
Confidence 889999999997777664333 35555554 46999999999766655543
No 305
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.74 E-value=2.5e-17 Score=181.81 Aligned_cols=164 Identities=14% Similarity=0.156 Sum_probs=117.6
Q ss_pred CCCEEEEc---CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--------------------
Q 006859 351 NGPLAIDG---GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------------------- 407 (628)
Q Consensus 351 ~~~l~~~~---~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------------------- 407 (628)
..++++.| ++.++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 260 ~~~l~~~~~~~~~~~~l~~is~~i~--------~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 260 ARNLTCWDVINPHRKRVDDVSFSLR--------RGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred EeCCcccccccccccccccceeEEe--------CCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 34466667 34679999999999 999999999999999999999999631
Q ss_pred ---HHhcCCcccCCCC---C-----------------c------h------HHHHHHhhcCCcc-ccccCcCchHHHHHH
Q 006859 408 ---LAQIGCYVPAHFS---T-----------------I------R------VVDRIFTRMGTVD-NLESNSSTFMTEMKE 451 (628)
Q Consensus 408 ---~~~~g~~v~~~~~---~-----------------i------~------~~~~~~~~~~~~~-~~~~~~s~~s~~~~~ 451 (628)
..++| |+|+... . . . .+..++.++++.+ ..++.+.++|+|++|
T Consensus 332 ~~~~~~i~-~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 332 QAIRAGIA-MVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHhCCCE-EcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 11245 5554420 0 0 0 1234566677753 567888999999999
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCee
Q 006859 452 TAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530 (628)
Q Consensus 452 ~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~ 530 (628)
+..+++++ .+|++++||||++|+|+.....+ ..++..+.+.+.+++++||+.+ .+...++++ +.+.+|++
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~~g~tviivsHd~~--~~~~~~d~v------~~l~~G~i 481 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI-YKLINQLAQEGVAIIVVSSELA--EVLGLSDRV------LVIGEGKL 481 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH-HHHHHHHHhCCCEEEEECCCHH--HHHHhCCEE------EEEECCEE
Confidence 88888776 78999999999999998655553 3455666667899999999954 444444544 34456666
Q ss_pred eE
Q 006859 531 DF 532 (628)
Q Consensus 531 ~~ 532 (628)
.+
T Consensus 482 ~~ 483 (500)
T TIGR02633 482 KG 483 (500)
T ss_pred EE
Confidence 54
No 306
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=3.6e-17 Score=158.18 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=90.8
Q ss_pred EEEEc----CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------------------
Q 006859 354 LAIDG----GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------------------- 407 (628)
Q Consensus 354 l~~~~----~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------------------- 407 (628)
+++.| +.+++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 9 ~~~~~~~~~~~~~il~~~s~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 9 ISFTTGKGRSKIPILKDFSGVVK--------PGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred cEEEeccCCCCceeeeeEEEEEC--------CCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 55666 35688999999999 999999999999999999999999421
Q ss_pred -HHhcCCcccCCCCC---chHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHH
Q 006859 408 -LAQIGCYVPAHFST---IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAI 482 (628)
Q Consensus 408 -~~~~g~~v~~~~~~---i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~ 482 (628)
..++| |+|+.... ..+.+.+...... ........+|+|++|+..+++++ .+|+++++|||+.|+|+.....+
T Consensus 81 ~~~~i~-~~~q~~~~~~~~tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 157 (202)
T cd03233 81 YPGEII-YVSEEDVHFPTLTVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157 (202)
T ss_pred hcceEE-EEecccccCCCCcHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH
Confidence 00122 33332211 1122222110000 14456678999999887777665 88999999999999998665554
Q ss_pred HHHHHHHHHh-CCcEEEEE-cCC
Q 006859 483 AWSCCEHLLS-LKAYTIFA-SHM 503 (628)
Q Consensus 483 ~~~~~~~l~~-~~~~vi~~-tH~ 503 (628)
.. ++..+.+ .+.+++++ +|+
T Consensus 158 ~~-~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 158 LK-CIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred HH-HHHHHHHhCCCEEEEEEcCC
Confidence 44 4455544 35665555 555
No 307
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.73 E-value=3.6e-17 Score=180.54 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=114.3
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H---------HHhc
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I---------LAQI 411 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~---------~~~~ 411 (628)
+.+..-..++++++++++. +|++++|+||||||||||+|+|+|+. + ...+
T Consensus 269 l~~~~l~~~~l~~isl~i~--------~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 269 LTVEDLTGEGFRNISLEVR--------AGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred EEEeCCCCCCccceeEEEc--------CCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 4444444456777777777 99999999999999999999999963 0 1235
Q ss_pred CCcccCCC---C-----Cc------------h----------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-
Q 006859 412 GCYVPAHF---S-----TI------------R----------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 412 g~~v~~~~---~-----~i------------~----------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
| |+|+.. + .+ . .+..++..+++. +...+.++.+|+|++|+..+++++
T Consensus 341 ~-~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~ 419 (510)
T PRK15439 341 V-YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLE 419 (510)
T ss_pred E-ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHh
Confidence 5 666541 0 00 0 122445667776 567888899999999988888766
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
.+|+++|||||++|.|+.....+.. ++..+.+.|.+++++||+.+ .+...++++ +.+.+|++.+
T Consensus 420 ~~p~lLlLDEPt~gLD~~~~~~l~~-~l~~l~~~g~tiIivsHd~~--~i~~~~d~i------~~l~~G~i~~ 483 (510)
T PRK15439 420 ASPQLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNVAVLFISSDLE--EIEQMADRV------LVMHQGEISG 483 (510)
T ss_pred hCCCEEEECCCCcCcChhHHHHHHH-HHHHHHhCCCEEEEECCCHH--HHHHhCCEE------EEEECCEEEE
Confidence 7899999999999999866665443 55556666899999999954 444445544 3445666654
No 308
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.7e-17 Score=164.56 Aligned_cols=152 Identities=14% Similarity=0.118 Sum_probs=107.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
+.+++.|+++++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 12 ~~~~~~~~~~~~l~~vs~~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 12 KLDKIFYGNFMAVRDSHVPIR--------KNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred EeEEEEeCCEEEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 447888999999999999999 999999999999999999999998631
Q ss_pred ----HHhcCCcccCCCCC--chH--------------------HHHHHhhcCCcc----ccccCcCchHHHHHHHHHHHH
Q 006859 408 ----LAQIGCYVPAHFST--IRV--------------------VDRIFTRMGTVD----NLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~--i~~--------------------~~~~~~~~~~~~----~~~~~~s~~s~~~~~~~~i~~ 457 (628)
...+| |+|+.... ... ....+..+++.. ........+|+|++|+..+++
T Consensus 84 ~~~~~~~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lar 162 (261)
T PRK14263 84 PVVVRRYIG-MVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162 (261)
T ss_pred hHhhhhceE-EEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 12244 55544321 111 122344445432 233456779999998888776
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++ .+|+++++|||+.|.|+.....+.. ++..+.+ +.+++++||+.+ .+...++++
T Consensus 163 al~~~p~llllDEPtsgLD~~~~~~l~~-~l~~~~~-~~tii~isH~~~--~i~~~~d~v 218 (261)
T PRK14263 163 AIATEPEVLLLDEPCSALDPIATRRVEE-LMVELKK-DYTIALVTHNMQ--QAIRVADTT 218 (261)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHhc-CCeEEEEeCCHH--HHHHhCCEE
Confidence 65 8899999999999999866555443 4444443 689999999954 344444544
No 309
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8e-17 Score=167.80 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=109.2
Q ss_pred CCEEEEcCccC-cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHh
Q 006859 352 GPLAIDGGRHP-ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQ 410 (628)
Q Consensus 352 ~~l~~~~~~~~-~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~ 410 (628)
..+++.|+..+ +|++++++++ +|+.+||+|+|||||||++|+|.+.. +..-
T Consensus 355 ~dV~f~y~~k~~iL~gvsf~I~--------kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 355 DDVHFSYGPKRKVLKGVSFTIP--------KGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred EeeEEEeCCCCceecceeEEec--------CCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhh
Confidence 45889999877 9999999999 99999999999999999999999853 4455
Q ss_pred cCCcccCCCCCch-----------------HHHHHHhhcCCccccccC-----------cCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTIR-----------------VVDRIFTRMGTVDNLESN-----------SSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i~-----------------~~~~~~~~~~~~~~~~~~-----------~s~~s~~~~~~~~i~~~~-~~ 461 (628)
|| +||++...+. .+-++..+.|+.|.+.+- --.+|+|++|+..+++.. .+
T Consensus 427 Ig-~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd 505 (591)
T KOG0057|consen 427 IG-VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD 505 (591)
T ss_pred ee-EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence 77 9998863221 233445566666654432 124788999988888776 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHH--hCCcEEEEEcCChhHHHHhh
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLL--SLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~--~~~~~vi~~tH~~~l~~~~~ 511 (628)
++++++||+++.+|...... +++.+. ..++|++++-|++.+..-++
T Consensus 506 a~Il~~DEaTS~LD~~TE~~----i~~~i~~~~~~rTvI~IvH~l~ll~~~D 553 (591)
T KOG0057|consen 506 APILLLDEATSALDSETERE----ILDMIMDVMSGRTVIMIVHRLDLLKDFD 553 (591)
T ss_pred CCeEEecCcccccchhhHHH----HHHHHHHhcCCCeEEEEEecchhHhcCC
Confidence 99999999966655544333 444444 35899999999977665444
No 310
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=4.8e-17 Score=163.55 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=107.0
Q ss_pred cccccccCCCCEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------
Q 006859 343 YTRPHFTENGPLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------- 406 (628)
Q Consensus 343 ~~~p~~~~~~~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------- 406 (628)
..++.+.- .++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 15 ~~~~~i~~-~~l~~~~~~~~~~il~~isl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i 85 (257)
T cd03288 15 GLGGEIKI-HDLCVRYENNLKPVLKHVKAYIK--------PGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDI 85 (257)
T ss_pred cCCceEEE-EEEEEEeCCCCCcceeEEEEEEc--------CCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEh
Confidence 34555542 347888875 679999999999 99999999999999999999999953
Q ss_pred -------HHHhcCCcccCCCCCch----------------HHHHHHhhcCC-----------ccccccCcCchHHHHHHH
Q 006859 407 -------ILAQIGCYVPAHFSTIR----------------VVDRIFTRMGT-----------VDNLESNSSTFMTEMKET 452 (628)
Q Consensus 407 -------~~~~~g~~v~~~~~~i~----------------~~~~~~~~~~~-----------~~~~~~~~s~~s~~~~~~ 452 (628)
+...+| |+|+....+. .....+...++ ..........+|+|++|+
T Consensus 86 ~~~~~~~~~~~i~-~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qr 164 (257)
T cd03288 86 SKLPLHTLRSRLS-IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQL 164 (257)
T ss_pred hhCCHHHHhhhEE-EECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHH
Confidence 122355 5555432110 01111222222 222333456799999988
Q ss_pred HHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 453 AFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 453 ~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
..+++++ .+|+++++|||++|.|+.....+ ..++..+. .+.+++++||+++.... ++++
T Consensus 165 l~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l~~~~-~~~tiii~sh~~~~~~~---~dri 224 (257)
T cd03288 165 FCLARAFVRKSSILIMDEATASIDMATENIL-QKVVMTAF-ADRTVVTIAHRVSTILD---ADLV 224 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHH-HHHHHHhc-CCCEEEEEecChHHHHh---CCEE
Confidence 8777766 88999999999999998654443 33444443 47999999999665542 5555
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.73 E-value=6.1e-17 Score=163.91 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=98.9
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--------HHhcCCcccCCCCCc--hHH----
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI--------LAQIGCYVPAHFSTI--RVV---- 425 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~--------~~~~g~~v~~~~~~i--~~~---- 425 (628)
.+++++++++++. +|++++|+||||||||||+++|+|+.- ...+| |+|+..... .+.
T Consensus 49 ~~~vL~~vs~~i~--------~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~-yv~q~~~l~~~tv~enl~ 119 (282)
T cd03291 49 GAPVLKNINLKIE--------KGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS-FSSQFSWIMPGTIKENII 119 (282)
T ss_pred cccceeeeeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEE-EEeCcccccccCHHHHhh
Confidence 4678888888888 999999999999999999999999420 01123 344332110 111
Q ss_pred ----------HHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHH
Q 006859 426 ----------DRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIA 483 (628)
Q Consensus 426 ----------~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~ 483 (628)
...+...++.+. +....+.+|+|++|+..+++.+ .+|+++++|||++|+|+.....+.
T Consensus 120 ~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~ 199 (282)
T cd03291 120 FGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199 (282)
T ss_pred cccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 111222233221 1223467999999888877666 789999999999999886555443
Q ss_pred HHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 484 WSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 484 ~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
..++..+. .+.+++++||+.+... .++++ ..+.+|++.
T Consensus 200 ~~ll~~~~-~~~tIiiisH~~~~~~---~~d~i------~~l~~G~i~ 237 (282)
T cd03291 200 ESCVCKLM-ANKTRILVTSKMEHLK---KADKI------LILHEGSSY 237 (282)
T ss_pred HHHHHHhh-CCCEEEEEeCChHHHH---hCCEE------EEEECCEEE
Confidence 33444443 3789999999966543 24444 344555554
No 312
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.73 E-value=2.3e-17 Score=186.39 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=105.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--------HHh--cCCcccCCC--
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI--------LAQ--IGCYVPAHF-- 419 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~--------~~~--~g~~v~~~~-- 419 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||||+|+|+.- ... ++ ++|+..
T Consensus 7 ~~ls~~~~~~~il~~is~~i~--------~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~-~l~q~~~~ 77 (635)
T PRK11147 7 HGAWLSFSDAPLLDNAELHIE--------DNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVA-RLQQDPPR 77 (635)
T ss_pred eeEEEEeCCceeEeCcEEEEC--------CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEE-EeccCCCC
Confidence 458899999999999999999 999999999999999999999999430 000 01 111110
Q ss_pred ---CCch-----------------------------------------------------HHHHHHhhcCCccccccCcC
Q 006859 420 ---STIR-----------------------------------------------------VVDRIFTRMGTVDNLESNSS 443 (628)
Q Consensus 420 ---~~i~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~s 443 (628)
+.+. .+..++..+|+. ..+.++
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~ 155 (635)
T PRK11147 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALS 155 (635)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchh
Confidence 0000 011123333442 256788
Q ss_pred chHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEE
Q 006859 444 TFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFY 522 (628)
Q Consensus 444 ~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~ 522 (628)
++|+|++++..+++.+ ..|+++|||||++++|+.... .+.+.+.+.+.+++++||+.++. ...++.+
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~----~L~~~L~~~~~tvlivsHd~~~l--~~~~d~i------ 223 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIE----WLEGFLKTFQGSIIFISHDRSFI--RNMATRI------ 223 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHH----HHHHHHHhCCCEEEEEeCCHHHH--HHhcCeE------
Confidence 9999999888888776 789999999997777664322 35555655567999999995543 3334444
Q ss_pred EEEeCCeee
Q 006859 523 VVIRNNRLD 531 (628)
Q Consensus 523 ~~~~~~~~~ 531 (628)
+.+++|+++
T Consensus 224 ~~L~~G~i~ 232 (635)
T PRK11147 224 VDLDRGKLV 232 (635)
T ss_pred EEEECCEEE
Confidence 344556554
No 313
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.73 E-value=3e-17 Score=181.03 Aligned_cols=160 Identities=12% Similarity=0.180 Sum_probs=115.0
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHHhc
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILAQI 411 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~~~ 411 (628)
+.+.....++++++++++. +|++++|+||||||||||+|+|+|+. +..++
T Consensus 258 l~~~~l~~~~l~~vsl~i~--------~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 258 LKVDNLSGPGVNDVSFTLR--------KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEeCcccCCcccceEEEc--------CCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 4555555567888888888 99999999999999999999999953 01236
Q ss_pred CCcccCCCC------Cch---------------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHH
Q 006859 412 GCYVPAHFS------TIR---------------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 412 g~~v~~~~~------~i~---------------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
| |+|+... ... ....++..+++. +...+....+|+|++|+..+++
T Consensus 330 ~-~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 330 V-YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred E-EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 6 7766520 000 122445667774 5677888999999999888887
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++ .+|+++|||||++|+|+.....+.. ++..+.+.|.+++++||+.+ .+...++++ +.+.+|++.
T Consensus 409 al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~g~tviivtHd~~--~~~~~~d~v------~~l~~G~i~ 474 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGAKKEIYQ-LINQFKAEGLSIILVSSEMP--EVLGMSDRI------LVMHEGRIS 474 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhHHHHHHH-HHHHHHHCCCEEEEEcCCHH--HHHhhCCEE------EEEECCEEE
Confidence 76 7899999999999999876666444 55555666899999999954 444444544 344556654
No 314
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.73 E-value=3.1e-17 Score=180.57 Aligned_cols=147 Identities=17% Similarity=0.238 Sum_probs=109.5
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------------------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------------------- 407 (628)
..++++.|+..++++++++++. +|++++|+||||||||||+|+|+|+.-
T Consensus 263 ~~~l~~~~~~~~il~~vsl~i~--------~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 263 LNNGVVSYNDRPILHNLSWQVN--------PGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred EeceEEEECCeeEEeeceEEEc--------CCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHH
Confidence 3458888888889999999999 999999999999999999999999521
Q ss_pred HHhcCCcccCCCCC-------c-----------------------hHHHHHHhhcCCcc-ccccCcCchHHHHHHHHHHH
Q 006859 408 LAQIGCYVPAHFST-------I-----------------------RVVDRIFTRMGTVD-NLESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 408 ~~~~g~~v~~~~~~-------i-----------------------~~~~~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~ 456 (628)
..++| |+|+.... + ..+..++..+++.+ ..+++++++|+|++|+..++
T Consensus 335 ~~~i~-~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 335 KKHIG-YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred Hhhce-EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 12344 44432100 0 01234556677776 67788899999999988888
Q ss_pred HhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCC-cEEEEEcCChhHH
Q 006859 457 QNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK-AYTIFASHMENLS 507 (628)
Q Consensus 457 ~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~-~~vi~~tH~~~l~ 507 (628)
+++ .+|+++++|||++|.|+.....+.. ++..+.+.+ .+++++||+.+..
T Consensus 414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhh
Confidence 776 8899999999999999876665444 444455444 5799999996544
No 315
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.2e-17 Score=181.30 Aligned_cols=153 Identities=12% Similarity=0.140 Sum_probs=111.3
Q ss_pred CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H---------HHhcCCcccCCC
Q 006859 362 PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I---------LAQIGCYVPAHF 419 (628)
Q Consensus 362 ~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~---------~~~~g~~v~~~~ 419 (628)
.+++++++++. +|++++|+||||||||||+|+|+|+. + ...+| |+|+..
T Consensus 277 ~~l~~isl~i~--------~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~-~v~q~~ 347 (510)
T PRK09700 277 KKVRDISFSVC--------RGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA-YITESR 347 (510)
T ss_pred CcccceeEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE-EccCcc
Confidence 47888888888 99999999999999999999999963 0 12355 666541
Q ss_pred ---CCc---h------------------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 420 ---STI---R------------------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 420 ---~~i---~------------------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
..+ . .+..++..+++. +...+.++++|+|++|+..+++.+ .+
T Consensus 348 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~ 427 (510)
T PRK09700 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCC 427 (510)
T ss_pred ccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcC
Confidence 000 0 123456677886 677888999999999988888776 78
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|+++|+|||++|+|+.....+. .++..+.+.|.+++++||+.+ .....++++ +.+.+|++..
T Consensus 428 p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tvi~vsHd~~--~~~~~~d~i------~~l~~G~i~~ 489 (510)
T PRK09700 428 PEVIIFDEPTRGIDVGAKAEIY-KVMRQLADDGKVILMVSSELP--EIITVCDRI------AVFCEGRLTQ 489 (510)
T ss_pred CCEEEECCCCCCcCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHH--HHHhhCCEE------EEEECCEEEE
Confidence 9999999999999986655544 455555566899999999954 333444444 3445666653
No 316
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.8e-17 Score=166.74 Aligned_cols=144 Identities=18% Similarity=0.220 Sum_probs=102.7
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI------------------------ 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------ 407 (628)
.++++.|+..++++++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 49 ~nl~~~~~~~~iL~~is~~i~--------~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 49 EDLDVYYGDDHALKGVSMDIP--------EKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred EEEEEEeCCeeeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 357788888889999999999 999999999999999999999999631
Q ss_pred ----HHhcCCcccCCCCCc--hHH----------------------------------HHHHhhcCCc----cccccCcC
Q 006859 408 ----LAQIGCYVPAHFSTI--RVV----------------------------------DRIFTRMGTV----DNLESNSS 443 (628)
Q Consensus 408 ----~~~~g~~v~~~~~~i--~~~----------------------------------~~~~~~~~~~----~~~~~~~s 443 (628)
...+| |+|+....+ .+. ..++..+++. +.......
T Consensus 121 ~~~~~~~i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 121 LVELRKRVG-MVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred HHHHhhceE-EEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 11244 666543211 111 1122223332 23355677
Q ss_pred chHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 444 TFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 444 ~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
.+|+|++|+..+++++ .+|+++|+|||++|+|+.....+ ..++..+.+ +.+++++||+.+.
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~-~~tiiivtH~~~~ 261 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAE-EYTVVVVTHNMQQ 261 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc-CCEEEEEEcCHHH
Confidence 8999999888887776 78999999999999998655554 334444544 4799999999544
No 317
>PRK13409 putative ATPase RIL; Provisional
Probab=99.72 E-value=4.7e-17 Score=180.89 Aligned_cols=143 Identities=14% Similarity=0.144 Sum_probs=105.5
Q ss_pred CEEEEcCcc-CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------H------------H-----
Q 006859 353 PLAIDGGRH-PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------I------------L----- 408 (628)
Q Consensus 353 ~l~~~~~~~-~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------~------------~----- 408 (628)
.++.+||.+ .+|.+++ .+. +|++++|+||||||||||+|+|+|+. + +
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~--------~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPK--------EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred CceEEecCCceeEecCC-cCC--------CCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHH
Confidence 388899875 5888887 677 99999999999999999999999942 1 0
Q ss_pred ----H-------hcCCcccCCCC--------Cc----------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 409 ----A-------QIGCYVPAHFS--------TI----------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 409 ----~-------~~g~~v~~~~~--------~i----------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
. +++ +.|+... ++ ...+.++..+++.+..++..+.+|+|++|+..+++.+
T Consensus 149 ~~~~~~~~~~~~~~~-~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al 227 (590)
T PRK13409 149 QNYFKKLYNGEIKVV-HKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAAL 227 (590)
T ss_pred HHHHHHHhccCccee-ecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 0 011 1111100 10 1123456677887778889999999999988888776
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.+|++++||||++++|+.....+. .++..+.+ +.+++++||+.+..
T Consensus 228 ~~~p~lllLDEPts~LD~~~~~~l~-~~i~~l~~-g~tvIivsHd~~~l 274 (590)
T PRK13409 228 LRDADFYFFDEPTSYLDIRQRLNVA-RLIRELAE-GKYVLVVEHDLAVL 274 (590)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHC-CCEEEEEeCCHHHH
Confidence 789999999999999986666544 45556666 99999999996543
No 318
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=7.1e-17 Score=157.01 Aligned_cols=140 Identities=11% Similarity=0.196 Sum_probs=99.3
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++.+.|+. .++++++++++. +|++++|+||||||||||+++|+|+. +..
T Consensus 11 ~l~~~~~~~~~~~l~~isl~i~--------~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 11 NLSVRYAPDLPPVLKNVSFKVK--------AGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred EEEEEeCCCCcccccCceEEEC--------CCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 47777764 479999999999 99999999999999999999999953 123
Q ss_pred hcCCcccCCCCCc--hHHHH-----------HHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCC
Q 006859 410 QIGCYVPAHFSTI--RVVDR-----------IFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATS 475 (628)
Q Consensus 410 ~~g~~v~~~~~~i--~~~~~-----------~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~ 475 (628)
++| |+|++...+ .+.+. +...+. +......+|+|++|+..+++.+ .+|+++++|||+.|+|
T Consensus 83 ~i~-~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 157 (207)
T cd03369 83 SLT-IIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASID 157 (207)
T ss_pred hEE-EEecCCcccCccHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 455 666553211 11111 111111 3446678999999877777665 8899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 476 SSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
+.....+. .++..+. .+.+++++||+.+..
T Consensus 158 ~~~~~~l~-~~l~~~~-~~~tiii~th~~~~~ 187 (207)
T cd03369 158 YATDALIQ-KTIREEF-TNSTILTIAHRLRTI 187 (207)
T ss_pred HHHHHHHH-HHHHHhc-CCCEEEEEeCCHHHH
Confidence 86655433 3344343 378999999996654
No 319
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.5e-17 Score=183.48 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=115.1
Q ss_pred CCCCEEEEcC----ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------H----------
Q 006859 350 ENGPLAIDGG----RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------I---------- 407 (628)
Q Consensus 350 ~~~~l~~~~~----~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~---------- 407 (628)
+-.++++.|+ ..++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 14 ~v~~l~~~y~~~~~~~~~l~~is~~v~--------~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 14 AVENLNIAFMQEQQKIAAVRNLSFSLQ--------RGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred EEeceEEEecCCCCceeEEEeeEEEEC--------CCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccc
Confidence 3345888885 3579999999999 99999999999999999999999953 0
Q ss_pred ----------------H-HhcCCcccCCC-----CCch----------------------HHHHHHhhcCCcc---cccc
Q 006859 408 ----------------L-AQIGCYVPAHF-----STIR----------------------VVDRIFTRMGTVD---NLES 440 (628)
Q Consensus 408 ----------------~-~~~g~~v~~~~-----~~i~----------------------~~~~~~~~~~~~~---~~~~ 440 (628)
. ..+| ||+++. .... .+..++..+|+.+ .+.+
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig-~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 164 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMA-MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR 164 (623)
T ss_pred cccccccCCHHHHHHHhCCCEE-EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence 0 1355 666543 1111 1123456677743 4677
Q ss_pred CcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeE
Q 006859 441 NSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKI 518 (628)
Q Consensus 441 ~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~ 518 (628)
.+.++|+||+|+..+++++ .+|+++|+|||+.++|+.....+.+ ++..+.+ .|.+++++||+.+ .+...++++..
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~-ll~~l~~~~g~tvi~itHdl~--~~~~~adri~v 241 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ-LIKVLQKEMSMGVIFITHDMG--VVAEIADRVLV 241 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-HHHHHHHhcCCEEEEEcCCHH--HHHHhCCEEEE
Confidence 8899999999988888776 8899999999999999866555444 5556654 5899999999944 44444555544
Q ss_pred EE
Q 006859 519 LH 520 (628)
Q Consensus 519 ~~ 520 (628)
++
T Consensus 242 l~ 243 (623)
T PRK10261 242 MY 243 (623)
T ss_pred ee
Confidence 43
No 320
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.71 E-value=4.6e-17 Score=183.99 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=104.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------HH---hcCCcccCCCC-
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------LA---QIGCYVPAHFS- 420 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------~~---~~g~~v~~~~~- 420 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||||+|+|+.- .. .+| |+++...
T Consensus 323 ~~l~~~~~~~~il~~vsl~i~--------~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~ 393 (635)
T PRK11147 323 ENVNYQIDGKQLVKDFSAQVQ--------RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAE 393 (635)
T ss_pred eeeEEEECCeEEEcCcEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-EEeCcccc
Confidence 358888888889999999999 999999999999999999999999530 11 244 5554321
Q ss_pred ---CchH-------------------HHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCh
Q 006859 421 ---TIRV-------------------VDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSS 476 (628)
Q Consensus 421 ---~i~~-------------------~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~ 476 (628)
...+ ...++..+++. +...+.++++|+|++++..+++.+ .+|+++|||||+.|+|+
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 0011 12234455664 456778899999999888887766 78999999999888877
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.... .+.+.+.+.+.+++++||+.++.
T Consensus 474 ~~~~----~l~~~l~~~~~tvi~vSHd~~~~ 500 (635)
T PRK11147 474 ETLE----LLEELLDSYQGTVLLVSHDRQFV 500 (635)
T ss_pred HHHH----HHHHHHHhCCCeEEEEECCHHHH
Confidence 5433 34455555567999999996543
No 321
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.71 E-value=5.8e-17 Score=196.85 Aligned_cols=153 Identities=15% Similarity=0.227 Sum_probs=112.8
Q ss_pred EEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhc
Q 006859 354 LAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQI 411 (628)
Q Consensus 354 l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~ 411 (628)
+.+.|+ ++++++++++++. +|++++|+||||||||||+|+|+|+. +..++
T Consensus 934 LsK~y~~~~k~aL~~lsl~I~--------~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 934 LVKIFEPSGRPAVDRLNITFY--------ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred EEEEecCCCceEEEeeEEEEc--------CCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 445563 4567777777777 99999999999999999999999963 22346
Q ss_pred CCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 412 GCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 412 g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
| ++|+....++ .+++++..+|+.+..++..+++|+||+|+..+++++ .+|++++
T Consensus 1006 G-~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257 1006 G-MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred E-EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 6 7776532111 124456778888888889999999999988887665 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEE
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKIL 519 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~ 519 (628)
||||++|.|+.....+ +.++..+. .|.+++++||+++.. ...++++..+
T Consensus 1085 LDEPTSGLDp~sr~~l-~~lL~~l~-~g~TIIltTHdmdea--~~laDrI~iL 1133 (2272)
T TIGR01257 1085 LDEPTSGVDPYSRRSI-WDLLLKYR-SGRTIIMSTHHMDEA--DLLGDRIAII 1133 (2272)
T ss_pred EECCCcCCCHHHHHHH-HHHHHHHh-CCCEEEEEECCHHHH--HHhCCEEEEE
Confidence 9999999998766654 44555554 489999999995543 3334554433
No 322
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.9e-16 Score=166.19 Aligned_cols=224 Identities=16% Similarity=0.142 Sum_probs=133.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC------cccccccCCCCEEEEcCcc-Ccccccccceeecc
Q 006859 303 LVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDR------YTRPHFTENGPLAIDGGRH-PILESIHNDFIPNN 375 (628)
Q Consensus 303 l~~~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~ 375 (628)
+..-+++--..+.......+..|.+ .+|-.-.....+.+ ++-|.-....++++.|..- |++.++++++.
T Consensus 270 ff~PlR~lGs~fH~~~~g~aa~d~i-~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~--- 345 (559)
T COG4988 270 FFQPLRDLGSFFHAAAAGEAAADKL-FTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIK--- 345 (559)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHH-HHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcccCCceeEec---
Confidence 3334444444555555556778887 66644222111111 0111111122577778654 89999999999
Q ss_pred cccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhcCCcccCCC----CCch-------
Q 006859 376 IFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQIGCYVPAHF----STIR------- 423 (628)
Q Consensus 376 ~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~g~~v~~~~----~~i~------- 423 (628)
+|+.++|+||||||||||++.|+|.. +..|++ +||+.+ +++.
T Consensus 346 -----~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~-~v~Q~p~lf~gTireNi~l~~ 419 (559)
T COG4988 346 -----AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS-WVSQNPYLFAGTIRENILLAR 419 (559)
T ss_pred -----CCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee-eeCCCCccccccHHHHhhccC
Confidence 99999999999999999999999932 334444 454433 1111
Q ss_pred ------HHHHHHhhc----------CCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHH
Q 006859 424 ------VVDRIFTRM----------GTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSC 486 (628)
Q Consensus 424 ------~~~~~~~~~----------~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~ 486 (628)
...+.+.+. |++..+..+-+.+|+|++|+..+++++ .+++++++|||+++.|...... ....
T Consensus 420 ~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~-i~~~ 498 (559)
T COG4988 420 PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI-ILQA 498 (559)
T ss_pred CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHH-HHHH
Confidence 111222222 333334445566999999988888877 7799999999988888744333 2333
Q ss_pred HHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHH
Q 006859 487 CEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYG 547 (628)
Q Consensus 487 ~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a 547 (628)
+..+.+ ++|++++||+.+...- .+.| +++++|+++...+-.........|+
T Consensus 499 l~~l~~-~ktvl~itHrl~~~~~---~D~I------~vld~G~l~~~g~~~~L~~~~~~y~ 549 (559)
T COG4988 499 LQELAK-QKTVLVITHRLEDAAD---ADRI------VVLDNGRLVEQGTHEELSEKQGLYA 549 (559)
T ss_pred HHHHHh-CCeEEEEEcChHHHhc---CCEE------EEecCCceeccCCHHHHhhcCcHHH
Confidence 333333 5999999999543333 3333 4556666665544444433333344
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=5.8e-17 Score=180.66 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=104.6
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------HH---hcCCcccCCC-C
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------LA---QIGCYVPAHF-S 420 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------~~---~~g~~v~~~~-~ 420 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+.- .. .+| |+|+.. .
T Consensus 328 ~~l~~~~~~~~~l~~isl~i~--------~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~v~q~~~~ 398 (556)
T PRK11819 328 ENLSKSFGDRLLIDDLSFSLP--------PGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLA-YVDQSRDA 398 (556)
T ss_pred EeEEEEECCeeeecceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEE-EEeCchhh
Confidence 357888888889999999999 999999999999999999999999531 11 245 666542 1
Q ss_pred ---CchH-------------------HHHHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCh
Q 006859 421 ---TIRV-------------------VDRIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSS 476 (628)
Q Consensus 421 ---~i~~-------------------~~~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~ 476 (628)
...+ ....+..+++.+ ...+.++++|+|++++..+++.+ .+|+++|||||++|.|+
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 0111 123456677753 46778899999999888887766 88999999999988887
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
.....+ .+.+.+.+.+++++||+.+.
T Consensus 479 ~~~~~l----~~~l~~~~~tvi~vtHd~~~ 504 (556)
T PRK11819 479 ETLRAL----EEALLEFPGCAVVISHDRWF 504 (556)
T ss_pred HHHHHH----HHHHHhCCCeEEEEECCHHH
Confidence 654443 33333333589999999553
No 324
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.9e-17 Score=166.77 Aligned_cols=152 Identities=16% Similarity=0.193 Sum_probs=106.5
Q ss_pred CCEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------------------
Q 006859 352 GPLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------------------- 407 (628)
Q Consensus 352 ~~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------------------- 407 (628)
.++++.|. .+++|+++++++. +|++++|+||||||||||+++|+|+.-
T Consensus 84 ~nls~~y~~~~~~~L~~is~~I~--------~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 84 RNFNFWYMNRTKHVLHDLNLDIK--------RNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred EeeEEEecCCCceeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 35777774 4578999999988 999999999999999999999999641
Q ss_pred ------HHhcCCcccCCCCCc--hHH----------------------HHHHhhcCC----ccccccCcCchHHHHHHHH
Q 006859 408 ------LAQIGCYVPAHFSTI--RVV----------------------DRIFTRMGT----VDNLESNSSTFMTEMKETA 453 (628)
Q Consensus 408 ------~~~~g~~v~~~~~~i--~~~----------------------~~~~~~~~~----~~~~~~~~s~~s~~~~~~~ 453 (628)
...+| |+|++...+ .+. ...+...++ .+.+......+|+|++|+.
T Consensus 156 ~~~~~lr~~i~-~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 156 ISSLELRTRIG-MVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred cchHhhhccEE-EEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 12345 666553211 110 112233333 2334567788999999988
Q ss_pred HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 454 FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 454 ~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+++++ .+|+++++|||++|.|+.....+ ..++..+.+ ++|++++||+++ .+.+.++++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i-~~~i~~l~~-~~Tii~iTH~l~--~i~~~~Dri 294 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKI-EELILELKK-KYSIIIVTHSMA--QAQRISDET 294 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc-CCEEEEEeCCHH--HHHHhCCEE
Confidence 888776 88999999999999988665553 334444444 699999999954 444445555
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.71 E-value=6.2e-17 Score=180.43 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=105.3
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------HH---hcCCcccCCCC-
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------LA---QIGCYVPAHFS- 420 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------~~---~~g~~v~~~~~- 420 (628)
.++++.|++.++++++++++. +|++++|+||||||||||+++|+|+.- .. .+| |+|+...
T Consensus 326 ~~l~~~~~~~~~l~~isl~i~--------~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~-~v~q~~~~ 396 (552)
T TIGR03719 326 ENLSKGFGDKLLIDDLSFKLP--------PGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLA-YVDQSRDA 396 (552)
T ss_pred eeEEEEECCeeeeccceEEEc--------CCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEE-EEeCCccc
Confidence 357888888889999999998 999999999999999999999999631 11 245 6655421
Q ss_pred C---chH-------------------HHHHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCh
Q 006859 421 T---IRV-------------------VDRIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSS 476 (628)
Q Consensus 421 ~---i~~-------------------~~~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~ 476 (628)
. ... ...++..+++.+ ...+.++++|+|++++..+++.+ .+|+++|||||++|+|+
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 0 011 123566677753 46778899999999988887766 88999999999988887
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 477 SDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
..... +.+.+.+.+.+++++||+.+..
T Consensus 477 ~~~~~----l~~~l~~~~~~viivsHd~~~~ 503 (552)
T TIGR03719 477 ETLRA----LEEALLEFAGCAVVISHDRWFL 503 (552)
T ss_pred HHHHH----HHHHHHHCCCeEEEEeCCHHHH
Confidence 55444 3333434345899999995533
No 326
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.5e-17 Score=177.08 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=109.7
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H---------HHhcCCcccCC
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I---------LAQIGCYVPAH 418 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~---------~~~~g~~v~~~ 418 (628)
+++++++++++. +|++++|+||||||||||+|+|+|+. + ...+| |+|+.
T Consensus 261 ~~~l~~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~-~~~q~ 331 (491)
T PRK10982 261 QPSIRDVSFDLH--------KGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA-LVTEE 331 (491)
T ss_pred CcccceeeEEEe--------CCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE-EcCCc
Confidence 568899888888 99999999999999999999999953 0 11144 55543
Q ss_pred CC------Cch---------------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 419 FS------TIR---------------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 419 ~~------~i~---------------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
.. ... .....+..+++. +...+.++++|+|++|+..+++.+ .+|+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ 411 (491)
T PRK10982 332 RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPE 411 (491)
T ss_pred hhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCC
Confidence 10 000 012344555664 456788899999999988888766 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++|||||++|.|+.....+. .++..+.+.+.+++++||+.+ .....++++ ..+.+|+++
T Consensus 412 illLDEPt~gLD~~~~~~~~-~~l~~l~~~~~tvi~vsHd~~--~~~~~~d~v------~~l~~g~i~ 470 (491)
T PRK10982 412 ILMLDEPTRGIDVGAKFEIY-QLIAELAKKDKGIIIISSEMP--ELLGITDRI------LVMSNGLVA 470 (491)
T ss_pred EEEEcCCCcccChhHHHHHH-HHHHHHHHCCCEEEEECCChH--HHHhhCCEE------EEEECCEEE
Confidence 99999999999987666544 355556667999999999954 344445544 334566665
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1e-16 Score=176.78 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=110.5
Q ss_pred CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------H--------------HHhcCCcccCCC
Q 006859 362 PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------I--------------LAQIGCYVPAHF 419 (628)
Q Consensus 362 ~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~--------------~~~~g~~v~~~~ 419 (628)
.+++++++++. +|++++|+||||||||||+|+|+|+. + ...+| |+|+..
T Consensus 267 ~~l~~isl~i~--------~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~~~q~~ 337 (501)
T PRK11288 267 GLREPISFSVR--------AGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM-LCPEDR 337 (501)
T ss_pred CcccceeEEEe--------CCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE-EcCcCH
Confidence 47788888888 99999999999999999999999953 0 01234 554431
Q ss_pred C---Cc------------------------------hHHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 420 S---TI------------------------------RVVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 420 ~---~i------------------------------~~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
. .+ .....++..+++. +...+.+.++|+|++|+..+++.+ .+|++
T Consensus 338 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~l 417 (501)
T PRK11288 338 KAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKV 417 (501)
T ss_pred hhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCE
Confidence 0 00 0123455667774 567888999999999988888776 78999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+|||||++|.|+.....+. .++..+.+.|.+++++||+.+ .+...++++ +.+.+|++++
T Consensus 418 llLDEPt~~LD~~~~~~l~-~~l~~l~~~g~tviivsHd~~--~~~~~~d~i------~~l~~g~i~~ 476 (501)
T PRK11288 418 ILLDEPTRGIDVGAKHEIY-NVIYELAAQGVAVLFVSSDLP--EVLGVADRI------VVMREGRIAG 476 (501)
T ss_pred EEEcCCCCCCCHhHHHHHH-HHHHHHHhCCCEEEEECCCHH--HHHhhCCEE------EEEECCEEEE
Confidence 9999999999986666543 355556677899999999954 444445544 3455666654
No 328
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=1.6e-16 Score=139.75 Aligned_cols=147 Identities=15% Similarity=0.201 Sum_probs=116.8
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------------
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------- 406 (628)
+++.+.||.+.+|-+++++.. .|+.++++||+|+|||||+|.+..+.
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~--------~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCP--------EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred cccccccccchheeeeeecCC--------CCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence 348899999999999988888 99999999999999999999999854
Q ss_pred --HHHhcCCcccCCCCCch-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 407 --ILAQIGCYVPAHFSTIR-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 407 --~~~~~g~~v~~~~~~i~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
+....| +|.+.....+ ...+++.++.+.+..++.+-.+|+|++|+..|++++
T Consensus 78 ~~lr~~vg-mvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaral 156 (242)
T COG4161 78 RDLRRNVG-MVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHHHHhhh-hhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHH
Confidence 233445 3333321111 234567888888888888888999999999888876
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
..|.++++|||++.+||.-... ...+++.+.+.|.|-+++||..+++.
T Consensus 157 mmkpqvllfdeptaaldpeitaq-vv~iikel~~tgitqvivthev~va~ 205 (242)
T COG4161 157 MMEPQVLLFDEPTAALDPEITAQ-IVSIIKELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred hcCCcEEeecCcccccCHHHHHH-HHHHHHHHHhcCceEEEEEeehhHHH
Confidence 7899999999988888854444 34577888889999999999977764
No 329
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=147.79 Aligned_cols=150 Identities=14% Similarity=0.222 Sum_probs=111.6
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch-----------------
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR----------------- 423 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~----------------- 423 (628)
++++.++++++. .|+++.|+|.||||||||++.|+| ++++++|.+.
T Consensus 19 k~~l~~~sL~I~--------~g~FvtViGsNGAGKSTlln~iaG---------~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 19 KRALNGLSLEIA--------EGDFVTVIGSNGAGKSTLLNAIAG---------DLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred HHHHhcCceeec--------CCceEEEEcCCCccHHHHHHHhhC---------ccccCCceEEECceecccCCHHHHhhH
Confidence 567888888888 999999999999999999999999 6666555443
Q ss_pred --------------------------------------------HHHHHHhh--cCCccccccCcCchHHHHHHH-HHHH
Q 006859 424 --------------------------------------------VVDRIFTR--MGTVDNLESNSSTFMTEMKET-AFVM 456 (628)
Q Consensus 424 --------------------------------------------~~~~~~~~--~~~~~~~~~~~s~~s~~~~~~-~~i~ 456 (628)
.+..-++. .|+...+..++..||+|++|. +.++
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M 161 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM 161 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence 11111222 245566777888899999985 4555
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeee
Q 006859 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535 (628)
Q Consensus 457 ~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 535 (628)
+.+.+|++++|||-++.+||.....+.....+...+.+.|.+++||. +.+..+.-.+. +..++|+++.++.
T Consensus 162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn--m~~Al~yG~Rl------ImLh~G~IvlDv~ 232 (263)
T COG1101 162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN--MEDALDYGNRL------IMLHSGKIVLDVT 232 (263)
T ss_pred HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc--HHHHHhhCCeE------EEEeCCeEEEEcc
Confidence 66699999999999999998777666665666666788999999999 44544433333 5567888887665
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.70 E-value=1.3e-16 Score=177.78 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=103.7
Q ss_pred CCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH-------H---HhcCCcccCCCC
Q 006859 352 GPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI-------L---AQIGCYVPAHFS 420 (628)
Q Consensus 352 ~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~-------~---~~~g~~v~~~~~ 420 (628)
.++++.|+ .+++++++++++. +|++++|+||||||||||||+|+|+.- . .++| |+|+...
T Consensus 8 ~nls~~~~~~~~il~~is~~i~--------~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~-~v~Q~~~ 78 (552)
T TIGR03719 8 NRVSKVVPPKKEILKDISLSFF--------PGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVG-YLPQEPQ 78 (552)
T ss_pred eeEEEecCCCCeeecCceEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccCC
Confidence 45889997 7889999999999 999999999999999999999999531 1 2345 5555432
Q ss_pred C---chHHHHH---------------------------------------------------------HhhcCCcccccc
Q 006859 421 T---IRVVDRI---------------------------------------------------------FTRMGTVDNLES 440 (628)
Q Consensus 421 ~---i~~~~~~---------------------------------------------------------~~~~~~~~~~~~ 440 (628)
. ..+.+.+ +..+|+. ....
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~ 157 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDA 157 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccC
Confidence 1 1111111 1112222 1356
Q ss_pred CcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 441 NSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 441 ~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
..+.+|+|++++..+++.+ .+|+++|||||+.++|+..... +.+.+.+.+.+++++||+.+. +...++.+
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~----l~~~L~~~~~tvIiisHd~~~--~~~~~d~v 228 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAW----LEQHLQEYPGTVVAVTHDRYF--LDNVAGWI 228 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHH----HHHHHHhCCCeEEEEeCCHHH--HHhhcCeE
Confidence 7789999999988888776 7899999999988777654333 444455556799999999553 33334444
No 331
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.70 E-value=2.2e-16 Score=155.27 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=95.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH----------------HHHhcCCcccCCCCC-----ch----------------
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV----------------ILAQIGCYVPAHFST-----IR---------------- 423 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~----------------~~~~~g~~v~~~~~~-----i~---------------- 423 (628)
+|++++|+||||||||||+|+|+|+. ...++| |+|+.... ..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~-~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIG-YVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEE-EecccccccCCCCccHHHHHHhccccccccc
Confidence 79999999999999999999999963 122355 66554211 00
Q ss_pred ---------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC
Q 006859 424 ---------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL 493 (628)
Q Consensus 424 ---------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~ 493 (628)
.+...+..+++.+........+|+|++|+..+++.+ .+|+++++|||++|.|+.....+.. ++..+.+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~ 162 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE-LFIELAGA 162 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHc
Confidence 122345566777777778889999999888887666 8899999999999999876666444 44445556
Q ss_pred CcEEEEEcCChhHHHHhhhCcce
Q 006859 494 KAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 494 ~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+.+++++||+.+ .+...++++
T Consensus 163 ~~tvii~sH~~~--~~~~~~d~i 183 (223)
T TIGR03771 163 GTAILMTTHDLA--QAMATCDRV 183 (223)
T ss_pred CCEEEEEeCCHH--HHHHhCCEE
Confidence 899999999954 333334433
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.70 E-value=1.6e-16 Score=177.22 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=113.4
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.|. ++++++++++++. +|+.++|+||||||||||+++|+|.. +..+
T Consensus 327 ~v~f~y~~~~~~l~~i~~~i~--------~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 327 NVTFAYQDNGFSVGPINLTIK--------RGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred EEEEEeCCCCeEEecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence 4777785 4578999999999 99999999999999999999999943 3445
Q ss_pred cCCcccCCCCC----c---------hHHHHHHhhcCCccccccC-----cCchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 411 IGCYVPAHFST----I---------RVVDRIFTRMGTVDNLESN-----SSTFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 411 ~g~~v~~~~~~----i---------~~~~~~~~~~~~~~~~~~~-----~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
+| ++|++..- + ......+..++..+....+ -..+|+|++|+..+++++ .+|+++++|||+
T Consensus 399 i~-~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 399 FS-AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred eE-EEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 66 66655321 1 0122344555655444322 246999999988888776 889999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++.|+.....+...+.+.+.+.++|++++||+++.... ++++ +++++|++.
T Consensus 478 s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~---~d~i------~~l~~G~i~ 528 (547)
T PRK10522 478 ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH---ADRL------LEMRNGQLS 528 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHh---CCEE------EEEECCEEE
Confidence 99988665554444444444458999999999655443 4444 344566654
No 333
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.69 E-value=3.4e-16 Score=180.17 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=111.2
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|+. +++++++++++. +|+.++|+||||||||||+|+|+|+. +..
T Consensus 482 ~vsf~y~~~~~~vL~~isl~i~--------~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 482 NITFGYSPLEPPLIENFSLTLQ--------PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred EEEEecCCCCCCcccceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHh
Confidence 57788864 689999999999 99999999999999999999999953 456
Q ss_pred hcCCcccCCCC----Cch-------------HHHHHHhhcCCc-----------cccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFS----TIR-------------VVDRIFTRMGTV-----------DNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~----~i~-------------~~~~~~~~~~~~-----------~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| +||++.. ++. ...+.+...++. ..+..+-..+|+|++|+..+++++ .
T Consensus 554 ~i~-~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 554 SVA-MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred hee-EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 777 8877642 111 111222222332 223334456999999988888776 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|++++||||++++|+..... +.+.+.+.++|++++||.+..... ++++ +++++|+++
T Consensus 633 ~p~iliLDEptS~LD~~te~~----i~~~l~~~~~T~IiitHrl~~i~~---~D~I------ivl~~G~i~ 690 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKI----IDDNLRRRGCTCIIVAHRLSTIRD---CDEI------IVLERGKVV 690 (710)
T ss_pred CCCEEEEECccccCCHHHHHH----HHHHHHhcCCEEEEEecCHHHHHh---CCEE------EEEeCCEEE
Confidence 899999999988877754433 445555568999999999655444 4444 344566554
No 334
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=169.13 Aligned_cols=148 Identities=17% Similarity=0.156 Sum_probs=110.9
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch-----------------
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR----------------- 423 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~----------------- 423 (628)
..+++++++.+. +|++++|+|++||||||+.|+|+| +++|++|.+.
T Consensus 304 ~~Av~~VSf~l~--------~GE~lglVGeSGsGKSTlar~i~g---------L~~P~~G~i~~~g~~~~~~~~~~~~~r 366 (539)
T COG1123 304 VKAVDDVSFDLR--------EGETLGLVGESGSGKSTLARILAG---------LLPPSSGSIIFDGQDLDLTGGELRRLR 366 (539)
T ss_pred eeeeeeeeeEec--------CCCEEEEECCCCCCHHHHHHHHhC---------CCCCCCceEEEeCcccccccchhhhhh
Confidence 346777777777 999999999999999999999999 4443332211
Q ss_pred -----------------------------------------HHHHHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-C
Q 006859 424 -----------------------------------------VVDRIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 424 -----------------------------------------~~~~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
.++.++...|+.. .+.+.+..||+|++|+..|++++ .
T Consensus 367 ~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~ 446 (539)
T COG1123 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALAL 446 (539)
T ss_pred hheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhc
Confidence 2445577778776 57888999999999999998877 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeC
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRN 527 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~ 527 (628)
+|.++++|||++.+|+.-...+...+.+.-.+.|.+.+|+||| +.-....+++|..++.+..+..
T Consensus 447 ~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD--l~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 447 EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD--LAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC--HHHHHhhCceEEEEECCeEEEe
Confidence 8999999999877777655554444444444579999999999 5555666777766665544433
No 335
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.69 E-value=5.6e-16 Score=177.59 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=111.5
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|+ ..|+++++++++. +|+.++|+||||||||||+|+|+|+. +..
T Consensus 456 nvsf~Y~~~~~~vL~~isl~i~--------~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 456 RVTFRYRPDGPLILDDVSLQIE--------PGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred EEEEEcCCCCccceeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 5778884 4579999999999 99999999999999999999999953 455
Q ss_pred hcCCcccCCCCC----ch------------HHHHHHhhcCCcccc-----------ccCcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHFST----IR------------VVDRIFTRMGTVDNL-----------ESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~~~----i~------------~~~~~~~~~~~~~~~-----------~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
++| +||++..- +. .....+...++.+.+ ..+-..+|+|++|+..+++++ .+
T Consensus 528 ~i~-~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 528 QLG-VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred ccE-EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 677 77776521 11 112233334444332 233456999999988888876 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
|++++||||+++.|+..... +.+.+.+.++|++++||.++.... ++++ +++++|+++
T Consensus 607 p~iLiLDEpTS~LD~~te~~----i~~~L~~~~~T~IiItHr~~~i~~---~D~I------ivl~~G~iv 663 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAI----VSESLERLKVTRIVIAHRLSTIRN---ADRI------YVLDAGRVV 663 (686)
T ss_pred CCEEEEeCCccCCCHHHHHH----HHHHHHHhCCeEEEEecChHHHHc---CCEE------EEEECCEEE
Confidence 99999999988888754444 444444457899999999654443 4544 445666655
No 336
>PLN03211 ABC transporter G-25; Provisional
Probab=99.69 E-value=1.2e-16 Score=179.93 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=105.4
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCCc
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGCY 414 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~~ 414 (628)
+...|+++++|+++++++. +|++++|+|||||||||||++|+|.. ...++| |
T Consensus 74 l~~~~~~~~iL~~vs~~i~--------~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~-y 144 (659)
T PLN03211 74 ETRQIQERTILNGVTGMAS--------PGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTG-F 144 (659)
T ss_pred ccccCCCCeeeeCCEEEEE--------CCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceE-E
Confidence 5667888899999999999 99999999999999999999999953 122355 6
Q ss_pred ccCCCCCc---h------------------------HHHHHHhhcCCccccc-----cCcCchHHHHHHHHHHHHhC-CC
Q 006859 415 VPAHFSTI---R------------------------VVDRIFTRMGTVDNLE-----SNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 415 v~~~~~~i---~------------------------~~~~~~~~~~~~~~~~-----~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+|++.... + ..+.++..+|+.+..+ .....+|+|++|+..+++.+ .+
T Consensus 145 v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 145 VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 66543111 0 1234455666654332 34567999999887777665 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
|+++++|||++|+|+.....+.. ++..+.+.|.|++++||+++
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~-~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVL-TLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHH-HHHHHHhCCCEEEEEecCCC
Confidence 99999999999999866555443 45556667899999999964
No 337
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.69 E-value=1.1e-15 Score=170.35 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=104.4
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|+ .+++++++++++. +|+.++|+||||||||||+++++|.. +..
T Consensus 321 ~v~~~y~~~~~~~l~~~~~~i~--------~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 321 NVTIVPPGGKKPTLRGISFRLQ--------AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred EEEEEcCCCCccccccceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 4777774 3589999999999 99999999999999999999999943 233
Q ss_pred hcCCcccCCCCCch--HH------------------------HHHHhhc--CCccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTIR--VV------------------------DRIFTRM--GTVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i~--~~------------------------~~~~~~~--~~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| ++|++..-+. +. +..+..+ |.+..+..+...+|+|++|+..+++++ .
T Consensus 393 ~i~-~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 393 HIG-YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred heE-EecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 455 6666532110 00 1112222 223334445567999999988888776 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+++++|||+++.|+.....+.. .+..+...++|++++||+.+..+ .++++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~~tvi~ith~~~~~~---~~d~i 523 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALAN-AIKALKARGITVVVITHRPSLLG---CVDKI 523 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHH-HHHHHhhCCCEEEEEeCCHHHHH---hCCEE
Confidence 899999999988888765444333 33333345799999999975443 34544
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=99.69 E-value=1.8e-16 Score=179.32 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=106.3
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--HH---hcCCcccCCC
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI--LA---QIGCYVPAHF 419 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~--~~---~~g~~v~~~~ 419 (628)
.+......++++.|++.++|+++++++. .|++++|+||||||||||||+|+|..+ .+ .++ ++++..
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~--------~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~-~~~Q~~ 244 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLA--------FGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL-HVEQEV 244 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEEC--------CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEE-EEeccC
Confidence 4444444569999998999999999999 999999999999999999999997320 00 111 111110
Q ss_pred -C-Cch------------------------------------------------------------------------HH
Q 006859 420 -S-TIR------------------------------------------------------------------------VV 425 (628)
Q Consensus 420 -~-~i~------------------------------------------------------------------------~~ 425 (628)
+ ... ..
T Consensus 245 ~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~ 324 (718)
T PLN03073 245 VGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARA 324 (718)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 0 000 01
Q ss_pred HHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 426 DRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 426 ~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
..++..+|+. +...+..+++|+|++++..+++.+ .+|+++|||||+.++|+... ..+.+.+.+.+.+++++||+
T Consensus 325 ~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~----~~l~~~L~~~~~tviivsHd 400 (718)
T PLN03073 325 ASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV----LWLETYLLKWPKTFIVVSHA 400 (718)
T ss_pred HHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH----HHHHHHHHHcCCEEEEEECC
Confidence 1123333442 234567889999999988888776 78999999999777776432 23555666668899999999
Q ss_pred hhHHHHhhhCcce
Q 006859 504 ENLSELATIYPNV 516 (628)
Q Consensus 504 ~~l~~~~~~~~~v 516 (628)
.+ .+...++++
T Consensus 401 ~~--~l~~~~d~i 411 (718)
T PLN03073 401 RE--FLNTVVTDI 411 (718)
T ss_pred HH--HHHHhCCEE
Confidence 54 344444544
No 339
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.68 E-value=3.3e-16 Score=174.75 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=108.3
Q ss_pred CEEEEcCc-----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------
Q 006859 353 PLAIDGGR-----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------- 406 (628)
Q Consensus 353 ~l~~~~~~-----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------- 406 (628)
++++.|+. +++++++++++. +|+.++|+||||||||||+++|+|..
T Consensus 342 ~v~f~y~~~~~~~~~~l~~vs~~i~--------~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 342 DVHMNPKAPEGSEGFALGPIDLRIA--------QGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred EEEEEeCCCCCCcCceeccceEEEc--------CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 47777864 368999999988 99999999999999999999999932
Q ss_pred HHHhcCCcccCCCC----Cch----------HHHHHHhhcCCcccccc---C---cCchHHHHHHHHHHHHhC-CCCcEE
Q 006859 407 ILAQIGCYVPAHFS----TIR----------VVDRIFTRMGTVDNLES---N---SSTFMTEMKETAFVMQNV-SERSLI 465 (628)
Q Consensus 407 ~~~~~g~~v~~~~~----~i~----------~~~~~~~~~~~~~~~~~---~---~s~~s~~~~~~~~i~~~~-~~~~l~ 465 (628)
+..++| ++|++.. .+. .....+...++.+.+.. + ...+|+|++|+..+++++ .+|+++
T Consensus 414 ~~~~i~-~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~il 492 (555)
T TIGR01194 414 YRDLFS-AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPIL 492 (555)
T ss_pred HHhhCc-EEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 334455 5555431 110 12234555666554432 1 256999999988888776 889999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++|||+++.|+.....+...+.+.+...++|++++||+.+..+ .++++
T Consensus 493 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~---~~d~i 540 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE---LADQI 540 (555)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH---hCCEE
Confidence 9999999998866555545555545556899999999965443 45544
No 340
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.6e-16 Score=160.43 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=100.5
Q ss_pred CCEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch------
Q 006859 352 GPLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR------ 423 (628)
Q Consensus 352 ~~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~------ 423 (628)
++++++|.. +++|+++++++. +|+.++|+|++||||||++.+++| ..++++|++.
T Consensus 340 ~~vsF~y~~~~~~~L~~~~l~l~--------~GEkvAIlG~SGsGKSTllqLl~~---------~~~~~~G~i~~~g~~~ 402 (573)
T COG4987 340 RNVSFTYPGQQTKALKNFNLTLA--------QGEKVAILGRSGSGKSTLLQLLAG---------AWDPQQGSITLNGVEI 402 (573)
T ss_pred ccceeecCCCccchhhccceeec--------CCCeEEEECCCCCCHHHHHHHHHh---------ccCCCCCeeeECCcCh
Confidence 457778764 459999999999 999999999999999999999998 3333333322
Q ss_pred ----------------------------------------HHHHHHhhcCCcc-----------ccccCcCchHHHHHHH
Q 006859 424 ----------------------------------------VVDRIFTRMGTVD-----------NLESNSSTFMTEMKET 452 (628)
Q Consensus 424 ----------------------------------------~~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~ 452 (628)
-.-.++...|+.+ .+..+-..||||++|+
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rR 482 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR 482 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHH
Confidence 1123344444433 3344455799999988
Q ss_pred HHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 453 AFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 453 ~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
..+++.+ .+.++++||||+.|+|+.....+...+.+++ .++|++++||..--.+.+
T Consensus 483 LAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~le~~ 539 (573)
T COG4987 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLERM 539 (573)
T ss_pred HHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccccHhhc
Confidence 8888776 8899999999999999876665444444433 389999999995434433
No 341
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=157.32 Aligned_cols=145 Identities=20% Similarity=0.258 Sum_probs=107.2
Q ss_pred CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhcCCcccC
Q 006859 359 GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQIGCYVPA 417 (628)
Q Consensus 359 ~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~g~~v~~ 417 (628)
...|++.++++.+. +|+.++|+||+|||||||.|+|.|+. +-.++| |+|+
T Consensus 347 ~~~pil~~isF~l~--------~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG-YLPQ 417 (580)
T COG4618 347 QKKPILKGISFALQ--------AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG-YLPQ 417 (580)
T ss_pred CCCcceecceeEec--------CCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC-cCcc
Confidence 35689999999988 99999999999999999999999965 455788 9997
Q ss_pred CC----CCchH----H------------------HHHHhhc--CCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEe
Q 006859 418 HF----STIRV----V------------------DRIFTRM--GTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMD 468 (628)
Q Consensus 418 ~~----~~i~~----~------------------~~~~~~~--~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llD 468 (628)
+- |++.. + +..+-++ |-+..+-.+-+++|+|++|+..+++++ .+|.+++||
T Consensus 418 dVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLD 497 (580)
T COG4618 418 DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLD 497 (580)
T ss_pred cceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEec
Confidence 63 33321 1 1111111 112233445567999999998888887 789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhC
Q 006859 469 ELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 469 E~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~ 513 (628)
||-+.+|.....++ ...+..++++|++++++||.+.+....++.
T Consensus 498 EPNsNLD~~GE~AL-~~Ai~~~k~rG~~vvviaHRPs~L~~~Dki 541 (580)
T COG4618 498 EPNSNLDSEGEAAL-AAAILAAKARGGTVVVIAHRPSALASVDKI 541 (580)
T ss_pred CCCCCcchhHHHHH-HHHHHHHHHcCCEEEEEecCHHHHhhccee
Confidence 99999887443443 344555778899999999998877665543
No 342
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.68 E-value=1.1e-15 Score=175.72 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=110.5
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
+++++|+ +.++++++++++. +|+.++|+||||||||||+|+|+|+. +..+
T Consensus 478 ~vsf~y~~~~~iL~~isl~i~--------~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 478 DVSYSYGYGSNILSDISLTIK--------MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred EEEEEcCCCCcceeceeEEEC--------CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 5778886 5689999999999 99999999999999999999999953 4556
Q ss_pred cCCcccCCCCCch------------------HHHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-C
Q 006859 411 IGCYVPAHFSTIR------------------VVDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 411 ~g~~v~~~~~~i~------------------~~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
+| |||++..-+. .+.+.+...++.+ .+..+...+|+|++|+..+++++ .
T Consensus 550 i~-~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 550 IN-YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred eE-EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 77 7877642111 1122223333322 23334456999999988888876 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|+++++|||+++.|+.....+...+.+ + .++|++++||++..... ++.+ .++++|+++
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~---~D~i------~~l~~G~i~ 687 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQ---SDKI------IVLDHGKII 687 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHc---CCEE------EEEECCEEE
Confidence 8999999999888887554443333332 2 47899999999765443 4444 344555554
No 343
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.68 E-value=1.7e-15 Score=170.30 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=103.4
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|.. .|+++++++++. +|+.++|+||||||||||+++|+|+. +..
T Consensus 335 ~v~f~y~~~~~~il~~inl~i~--------~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 335 NVTFRYPGRDRPALDSISLVIE--------PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred EEEEEcCCCCCccccCeeEEec--------CCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHh
Confidence 46677743 678999999998 99999999999999999999999954 344
Q ss_pred hcCCcccCCC----CCch--------------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-
Q 006859 410 QIGCYVPAHF----STIR--------------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 410 ~~g~~v~~~~----~~i~--------------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
+++ |+|++. +++. .....+...|+.+. +...-..+|+|++|+..+++.+
T Consensus 407 ~i~-~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 407 QVA-LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred hce-EEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 566 777664 2211 11223334444332 2223346999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
.+|++++||||+++.|......+...+.+ + ..++|++++||+..+...++
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~-~-~~~~tiIiitH~~~~~~~~D 535 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALER-L-MQGRTTLVIAHRLSTIEKAD 535 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHH-H-hCCCEEEEEehhhHHHHhCC
Confidence 88999999999888877655544333322 2 24799999999976554443
No 344
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.67 E-value=2.3e-15 Score=169.56 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=103.0
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|.. .|+++++++++. +|+.++|+||||||||||+++|+|+. +..
T Consensus 346 ~vsf~y~~~~~~il~~i~l~i~--------~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 346 NVTFTYPGKEVPALRNINFKIP--------AGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred EEEEecCCCCCccccCceEEeC--------CCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHh
Confidence 46777753 679999999999 99999999999999999999999954 345
Q ss_pred hcCCcccCCC----CCch--------------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-
Q 006859 410 QIGCYVPAHF----STIR--------------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 410 ~~g~~v~~~~----~~i~--------------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
++| |+|++. +++. .....+...++.+. +..+-..+|+|++|+..+++++
T Consensus 418 ~i~-~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 418 QVA-LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred hce-EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 566 777664 2211 11112222332222 2222355999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+|+++++|||+++.|+.....+...+.+ + ..++|++++||+++.... +++|
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~-~-~~~~tvI~VtHr~~~~~~---~D~I 548 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDE-L-QKNRTSLVIAHRLSTIEK---ADEI 548 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHH-H-hCCCEEEEEecchHHHHh---CCEE
Confidence 88999999999888777554443333322 2 246999999999755443 4544
No 345
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.67 E-value=7.5e-16 Score=151.50 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=98.7
Q ss_pred EEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHH-HHHHHHH--HH---------HhcC-CcccC----
Q 006859 355 AIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYL-QQVCLIV--IL---------AQIG-CYVPA---- 417 (628)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTll-k~i~g~~--~~---------~~~g-~~v~~---- 417 (628)
.+.+...++++++++++. +|++++|+||||||||||+ ..+.... .+ ...| .+.|.
T Consensus 2 ~~~~~~~~~l~~vsl~i~--------~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (226)
T cd03270 2 IVRGAREHNLKNVDVDIP--------RNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSI 73 (226)
T ss_pred EeccchhhccccceeecC--------CCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccc
Confidence 345567788999999999 9999999999999999996 3332100 00 0111 01110
Q ss_pred ----------CC-------CCch-------HH------------HHHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-
Q 006859 418 ----------HF-------STIR-------VV------------DRIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 418 ----------~~-------~~i~-------~~------------~~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
+. ..+. .+ ...+..+++.+ ......+.+|+|++|+..+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 74 EGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred cCCCceEEecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 00 0110 00 12234456655 46778899999999988888776
Q ss_pred CCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 460 SER--SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 460 ~~~--~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+| +++++|||++|+|+.....+.. ++..+.+.+.+++++||+.+... .++++
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~-~l~~~~~~g~tii~itH~~~~~~---~~d~i 208 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIE-TLKRLRDLGNTVLVVEHDEDTIR---AADHV 208 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHhCCCEEEEEEeCHHHHH---hCCEE
Confidence 454 6999999999999876665444 34445567899999999976543 35554
No 346
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.66 E-value=1.9e-15 Score=171.18 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=103.7
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH----------HHhcCCcccCCCC-
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI----------LAQIGCYVPAHFS- 420 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~----------~~~~g~~v~~~~~- 420 (628)
++++.|. +.++++++++++. +|++++|+||||||||||+|+|+|+.- ..++| |+|++..
T Consensus 456 nv~~~~~~~~~il~~isl~i~--------~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~-~v~Q~~~l 526 (659)
T TIGR00954 456 NIPLVTPNGDVLIESLSFEVP--------SGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLF-YVPQRPYM 526 (659)
T ss_pred eeEEECCCCCeeeecceEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEE-EECCCCCC
Confidence 4677774 4578999888888 999999999999999999999999531 12344 5665431
Q ss_pred ---Cc--------------------hHHHHHHhhcCCccccccC---------cCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 421 ---TI--------------------RVVDRIFTRMGTVDNLESN---------SSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 421 ---~i--------------------~~~~~~~~~~~~~~~~~~~---------~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
++ ......+..+++.+.+.++ ...+|+|++|+..+++++ .+|++++|
T Consensus 527 ~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illL 606 (659)
T TIGR00954 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAIL 606 (659)
T ss_pred CCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 00 0122345556665544432 267999999988888776 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
|||+++.|+..... +.+.+.+.+.|++++||+.++...+
T Consensus 607 DEpts~LD~~~~~~----l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 607 DECTSAVSVDVEGY----MYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred eCCccCCCHHHHHH----HHHHHHHcCCEEEEEeCchHHHHhC
Confidence 99988888754333 4455555689999999997755443
No 347
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.66 E-value=2e-15 Score=170.27 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=102.8
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.|+. .|+++++++++. +|+.++|+||||||||||+|+|+|+. +..+
T Consensus 345 ~v~f~y~~~~~il~~i~l~i~--------~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~ 416 (592)
T PRK10790 345 NVSFAYRDDNLVLQNINLSVP--------SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG 416 (592)
T ss_pred EEEEEeCCCCceeeceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhh
Confidence 46777753 678999999998 99999999999999999999999943 4456
Q ss_pred cCCcccCCCCCc----h------------HHHHHHhhcCCcccc-----------ccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 411 IGCYVPAHFSTI----R------------VVDRIFTRMGTVDNL-----------ESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 411 ~g~~v~~~~~~i----~------------~~~~~~~~~~~~~~~-----------~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
+| |+|++..-+ . ...+.+...|+.+.+ ...-..+|+|++|+..+++++ .+|
T Consensus 417 i~-~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 417 VA-MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred eE-EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 66 777765222 1 122233444443322 223345999999988888776 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHH
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSEL 509 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~ 509 (628)
+++++|||+++.|+.....+...+.+ +. .++|++++||+++....
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~-~~-~~~tvIivtHr~~~l~~ 540 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAA-VR-EHTTLVVIAHRLSTIVE 540 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH-Hh-CCCEEEEEecchHHHHh
Confidence 99999999888887554443333322 22 36999999999654443
No 348
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.66 E-value=7.6e-16 Score=172.52 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=112.4
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|+. +++++++++++. +|+.++|+||||||||||+++|+|.. +..
T Consensus 343 ~v~f~y~~~~~~il~~i~~~i~--------~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 343 NVSFTYPDQPQPVLKGLSLQIK--------AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred EEEEECCCCCCcceecceEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 47788853 579999999999 99999999999999999999999943 345
Q ss_pred hcCCcccCCCCC----ch-------------HHHHHHhhcCCcccccc----------CcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHFST----IR-------------VVDRIFTRMGTVDNLES----------NSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~~~----i~-------------~~~~~~~~~~~~~~~~~----------~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
++| ++|++..- +. .....+...++.+.+.. +...+|+|++|+..+++.+ .+
T Consensus 415 ~i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 415 AIS-VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred hee-EEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 566 77766421 11 22334455566555443 4456999999988888776 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
|+++++|||+++.|+.....+...+.+ + ..++|++++||++..... ++++ +++++|+++
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~-~-~~~~tviiitHr~~~~~~---~d~i------~~l~~G~i~ 552 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAE-H-AQNKTVLMITHRLTGLEQ---FDRI------CVMDNGQII 552 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH-H-cCCCEEEEEecChhHHHh---CCEE------EEEeCCeEE
Confidence 999999999888888655544443332 2 247899999999654433 4544 344555554
No 349
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.66 E-value=3.7e-15 Score=167.89 Aligned_cols=147 Identities=13% Similarity=0.127 Sum_probs=102.7
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.|+. .++++++++++. +|+.++|+||||||||||+|+|+|+. +..+
T Consensus 339 ~vsf~y~~~~~iL~~inl~i~--------~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 339 DVSFSYDNSRQGVEDVSFEAK--------PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred EEEEEeCCCCceecceeEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 47778854 678999999999 99999999999999999999999953 3445
Q ss_pred cCCcccCCCCCc----h-------------HHHHHHhhcCCc-----------cccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTI----R-------------VVDRIFTRMGTV-----------DNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i----~-------------~~~~~~~~~~~~-----------~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
++ |+|++..-+ . .....+...++. ..+..+...+|+|++|+..+++++ .+
T Consensus 411 i~-~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 411 IA-VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred eE-EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 66 777664211 1 111122222322 223333456999999988888776 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
|+++++|||++++|+.....+...+.+ + ..++|++++||+.+....+
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~-~-~~~~tvIiitHr~~~~~~~ 536 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDE-L-MKGRTTFIIAHRLSTVRNA 536 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHH-H-hcCCEEEEEEecHHHHHhC
Confidence 999999999988888655544333322 2 2479999999997654443
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=4.9e-18 Score=152.34 Aligned_cols=205 Identities=16% Similarity=0.164 Sum_probs=142.3
Q ss_pred cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCc
Q 006859 363 ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNS 442 (628)
Q Consensus 363 ~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~ 442 (628)
+++.++++.. .|+.++|+|.||||||||.|+|+| .+||.+|.+.+.++.+.. |
T Consensus 28 AV~~vSFtL~--------~~QTlaiIG~NGSGKSTLakMlaG---------mi~PTsG~il~n~~~L~~-~--------- 80 (267)
T COG4167 28 AVKPVSFTLR--------EGQTLAIIGENGSGKSTLAKMLAG---------MIEPTSGEILINDHPLHF-G--------- 80 (267)
T ss_pred cccceEEEec--------CCcEEEEEccCCCcHhHHHHHHhc---------ccCCCCceEEECCccccc-c---------
Confidence 4455566666 899999999999999999999999 999999999887766542 2
Q ss_pred CchHHHHHHHHHHHHhC---CCCcEE---EEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 443 STFMTEMKETAFVMQNV---SERSLI---VMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 443 s~~s~~~~~~~~i~~~~---~~~~l~---llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.++...+.+..|++.. -+|.+- +||+|.+--...+..+....+.+.|...|. +-+.++.++
T Consensus 81 -Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL----------~Pdhan~~~-- 147 (267)
T COG4167 81 -DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL----------LPDHANYYP-- 147 (267)
T ss_pred -chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc----------Cccccccch--
Confidence 1444456666677665 234442 688887644444555555556665544331 112333444
Q ss_pred eEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-----HHHHHHHhhhhhhhhhHHHH
Q 006859 517 KILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-----ITSRITKKEVKRMEINCLQY 586 (628)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-----~~~~l~~~~~~~~~~~~~~~ 586 (628)
..|+.|+.|++..|+++.- ++|+.-..+|.+-+ ++-+|.++.+. ..+.++
T Consensus 148 -----------------~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~Gi---SyiYV~ 207 (267)
T COG4167 148 -----------------HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI---SYIYVT 207 (267)
T ss_pred -----------------hhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCc---eEEEEe
Confidence 7789999999888887754 44554555554443 44455555554 678899
Q ss_pred HHHHHHHHHHHHHHhhhccCCCHH-HHHHHHHHHHHHHhccC
Q 006859 587 KQIQMLYHAAQRLICLKYSNQDEE-SIRHALQNLKESFIDGR 627 (628)
Q Consensus 587 h~~~~~~~~~~~~~~l~~g~~~~~-~~~~~l~~~~~~~~~~~ 627 (628)
.++..+.+++|.|+||+.|++.+- .+.+.+..+++..|++.
T Consensus 208 QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRl 249 (267)
T COG4167 208 QHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRL 249 (267)
T ss_pred chhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHH
Confidence 999999999999999999998765 44555777777777654
No 351
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.66 E-value=6e-16 Score=160.47 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=90.6
Q ss_pred EEecCCCChhHHHHHHHHHH-------------------HHHhcCCcccCCCCCch------------------------
Q 006859 387 VTGPNMSGKSTYLQQVCLIV-------------------ILAQIGCYVPAHFSTIR------------------------ 423 (628)
Q Consensus 387 i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~~v~~~~~~i~------------------------ 423 (628)
|+||||||||||+|+|+|+. ...++| |+|++...++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHIN-MVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE-EEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999953 112355 5555432111
Q ss_pred HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
.....+..+++.+..++....+|+|++|+..+++++ .+|++++||||++|+|+.....+...+.+...+.+.+++++||
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 123455667787778888899999999988888776 7899999999999999876665444343333345899999999
Q ss_pred ChhHHHHhhhCcce
Q 006859 503 MENLSELATIYPNV 516 (628)
Q Consensus 503 ~~~l~~~~~~~~~v 516 (628)
+. .+....++++
T Consensus 160 d~--~e~~~~~d~i 171 (325)
T TIGR01187 160 DQ--EEAMTMSDRI 171 (325)
T ss_pred CH--HHHHHhCCEE
Confidence 94 3444444555
No 352
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.66 E-value=3.1e-15 Score=168.42 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=102.3
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
+++++|.. +++++++++++. +|+.++|+||||||||||+|+|+|+. +.
T Consensus 342 ~v~f~y~~~~~~~iL~~inl~i~--------~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 342 QVNFAYPARPDQPALDGLNLTVR--------PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred EEEEECCCCCCCccccceeEEec--------CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 46777753 578999988888 99999999999999999999999954 33
Q ss_pred HhcCCcccCCCC----Cch-------------HHHHHHhhcCC-----------ccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHFS----TIR-------------VVDRIFTRMGT-----------VDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~~----~i~-------------~~~~~~~~~~~-----------~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| |+|++.. ++. .....+...++ +..+..+...+|+|++|+..+++++
T Consensus 414 ~~i~-~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 414 ARMA-LVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred Hhce-EEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 4667 7777642 221 11122222232 2223344566999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
.+|+++++|||+++.|+.....+...+ ..+. .++|++++||+.+....+
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l-~~~~-~~~t~IiitH~~~~~~~~ 541 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQAL-ETLM-KGRTTLIIAHRLATVLKA 541 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHH-HHHh-CCCEEEEEecchHHHHhC
Confidence 789999999998888876544333322 2222 479999999997655433
No 353
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.66 E-value=2.7e-15 Score=171.99 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=107.5
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
++++.|+. .|+++++++++. +|+.++|+||||||||||+++|+|+. +.
T Consensus 483 nVsf~Y~~~~~~~vL~~isl~i~--------~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 483 DVSFSYPNRPDVPVLKGLTFTLH--------PGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred EEEEECCCCCCCccccCceEEEc--------CCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 57788864 468999999999 99999999999999999999999953 34
Q ss_pred HhcCCcccCCCC----Cch-------------HHHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHFS----TIR-------------VVDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~~----~i~-------------~~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| ++|++.. ++. ...+.+...++.+ .+..+-..+|+|++|+..+++++
T Consensus 555 ~~i~-~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 555 RQVA-LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred hhce-EEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 4566 7776642 111 1122233333322 22333456999999988888876
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
.+|+++++|||+++.|+..... +.+.....++|++++||..+.... +++| +++++|+++
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~----i~~~~~~~~~TvIiItHrl~~i~~---aD~I------ivL~~G~iv 692 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQL----LQESRSRASRTVLLIAHRLSTVER---ADQI------LVLKKGSVV 692 (711)
T ss_pred cCCCEEEEEccccccCHHHHHH----HHHhhccCCCeEEEEeccHHHHHh---CCEE------EEEECCEEE
Confidence 8899999999988877743222 333222357999999999655443 4544 344566554
No 354
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.66 E-value=3.6e-15 Score=168.76 Aligned_cols=152 Identities=18% Similarity=0.259 Sum_probs=114.0
Q ss_pred CCEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------
Q 006859 352 GPLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------- 406 (628)
.++++.|+. .++++++++++. +|++++|+||||||||||+++|+|+.
T Consensus 8 ~nl~~~y~~~~~~~~il~~vs~~i~--------~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 8 KDIRRSYPSGEEQVEVLKGISLDIY--------AGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred eeEEEEeCCCCCCeeeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHH
Confidence 347888853 468999999999 99999999999999999999999953
Q ss_pred H----HHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 407 I----LAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 407 ~----~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
+ ...+| |+|++...++ ....++..+|+.+..+.....+|+|++|...+++.
T Consensus 80 ~~~~~~~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 80 LAQLRREHFG-FIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHHhccEE-EEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 1 12355 6665442211 11334556777777888889999999998888877
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+ .+|+++++|||+.|+|+.....+ ..+++.+.+.+.+++++||+.++.+. ++++
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l-~~ll~~l~~~g~tilivsH~~~~~~~---~d~i 213 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEV-MAILHQLRDRGHTVIIVTHDPQVAAQ---AERV 213 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEECCCHHHHHh---CCEE
Confidence 6 78999999999999998655553 34555566668999999999776543 4544
No 355
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.65 E-value=4.4e-15 Score=166.32 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=100.2
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
.++++|. .+++++++++++. +|+.++|+||||||||||+++|+|+. +..
T Consensus 318 ~v~~~y~~~~~~~l~~i~~~i~--------~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 318 IRQFTYPQTDHPALENVNFTLK--------PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred EEEEECCCCCCccccCeeEEEC--------CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 3666774 3679999999999 99999999999999999999999943 234
Q ss_pred hcCCcccCCCCC----ch-------------HHHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFST----IR-------------VVDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~----i~-------------~~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| ++|++..- +. .....+...++.+ .+..+...+|+|++|+..+++++ .
T Consensus 390 ~i~-~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 390 RLA-VVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred heE-EEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 555 66655321 11 1112222223222 22234456999999988888776 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
+|+++++|||+++.|+.....+...+.+ + ..++|++++||+.+...
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~-~-~~~~tii~itH~~~~~~ 514 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQ-W-GEGRTVIISAHRLSALT 514 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHH-H-hCCCEEEEEecchhHHH
Confidence 8999999999988888655554443322 2 25799999999965443
No 356
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.65 E-value=4.6e-15 Score=170.29 Aligned_cols=159 Identities=18% Similarity=0.261 Sum_probs=109.8
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|+ ..|+++++++++. +|+.++|+||||||||||+|+|+|+. +..
T Consensus 468 ~vsf~Y~~~~~~vL~~i~l~i~--------~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 468 NVSFAYPGQETPALDNVSLTIR--------PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred EEEEEeCCCCccceeeeeEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 4777885 3578999999999 99999999999999999999999943 345
Q ss_pred hcCCcccCCCCC----ch-------------HHHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFST----IR-------------VVDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~----i~-------------~~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| +||++..- +. .+.+.+...++.+ .+..+...+|+|++|+..+++++ .
T Consensus 540 ~i~-~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 540 NIG-YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred ccE-EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 666 77766421 11 1122233333332 22334456999999988888876 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|+++++|||+++.|+.....+...+.+ +. .++|++++||+++.... ++++ +++++|+++
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~-~~-~~~T~iiItHrl~~~~~---~D~i------ivl~~G~i~ 678 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKR-WL-AGKTLVLVTHRTSLLDL---VDRI------IVMDNGRIV 678 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHH-Hh-CCCEEEEEecCHHHHHh---CCEE------EEEeCCEEE
Confidence 8999999999888888655554433322 22 47999999999765443 4544 344555554
No 357
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.6e-16 Score=149.09 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=101.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH-------------------------HHHhcCCcccCCCCCc-------------
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV-------------------------ILAQIGCYVPAHFSTI------------- 422 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~-------------------------~~~~~g~~v~~~~~~i------------- 422 (628)
...+++|.|++||||||++++|+|+. -...+| ||+++...+
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriG-YVFQDARLFpH~tVrgNL~YG~ 101 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIG-YVFQDARLFPHYTVRGNLRYGM 101 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheee-eEeeccccccceEEecchhhhh
Confidence 33799999999999999999999965 233566 666554222
Q ss_pred -----hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCc
Q 006859 423 -----RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKA 495 (628)
Q Consensus 423 -----~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~ 495 (628)
..+|++..-+|+...+++.++++|+|.+|+..|.+++ +.|+|++||||.+.+|.--...+.- .++.|. +...
T Consensus 102 ~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilp-ylERL~~e~~I 180 (352)
T COG4148 102 WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-YLERLRDEINI 180 (352)
T ss_pred cccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHH-HHHHHHHhcCC
Confidence 2578888999999999999999999999999998877 9999999999977776543333322 345555 4578
Q ss_pred EEEEEcCChhHHHHhhhCcce
Q 006859 496 YTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 496 ~vi~~tH~~~l~~~~~~~~~v 516 (628)
-++++||. +.+++...++|
T Consensus 181 PIlYVSHS--~~Ev~RLAd~v 199 (352)
T COG4148 181 PILYVSHS--LDEVLRLADRV 199 (352)
T ss_pred CEEEEecC--HHHHHhhhheE
Confidence 89999999 55666655655
No 358
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.65 E-value=3.7e-15 Score=167.23 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=102.8
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.|+. .++++++++++. +|+.++|+||||||||||+++|+|.. +..+
T Consensus 339 ~v~~~y~~~~~~l~~i~~~i~--------~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 339 HITFEFANSSQGVFDVSFEAK--------AGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred EEEEECCCCCccccceeEEEc--------CCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 47777864 578898888888 99999999999999999999999943 2334
Q ss_pred cCCcccCCCCCch--H---------------HHHHHhhc-----------CCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTIR--V---------------VDRIFTRM-----------GTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i~--~---------------~~~~~~~~-----------~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+| ++|++..-+. + ........ |.+..+..+...+|+|++|+..+++++ .+
T Consensus 411 i~-~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 411 IA-TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred eE-EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 55 6665532110 0 01111111 222233344566999999988888776 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+++++|||+++.|+.....+...+ ..+ ..+.|++++||+.+.... ++++
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l-~~~-~~~~tvI~isH~~~~~~~---~d~i 539 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAI-DAL-RKNRTTFIIAHRLSTVRN---ADLV 539 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHH-HHH-hCCCEEEEEEcChHHHHc---CCEE
Confidence 9999999999998886655543333 333 247999999999654433 5554
No 359
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.65 E-value=6.4e-15 Score=168.94 Aligned_cols=159 Identities=14% Similarity=0.182 Sum_probs=110.1
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|+ ..++++++++++. +|+.++|+||||||||||+|+|+|+. +..
T Consensus 460 ~vsf~y~~~~~~il~~i~l~i~--------~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 460 NIRFRYAPDSPEVLSNLNLDIK--------PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred EEEEEcCCCCccccccceEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHH
Confidence 4777774 3578999999999 99999999999999999999999953 455
Q ss_pred hcCCcccCCCCCch-----------------HHHHHHhhcC-----------CccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTIR-----------------VVDRIFTRMG-----------TVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i~-----------------~~~~~~~~~~-----------~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| +||++..-+. .....+...+ .+..+..+...+|+|++|+..+++++ .
T Consensus 532 ~i~-~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 532 QMG-VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred hCe-EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 666 7776642111 1112222223 23333444567999999988888776 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|+++++|||+++.|+.....+...+.+ + ..++|++++||+.+.... ++++ +++++|+++
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~-~-~~~~t~i~itH~~~~~~~---~d~i------i~l~~G~i~ 670 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMRE-I-CRGRTVIIIAHRLSTVRA---CDRI------IVLEKGQIA 670 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHH-H-hCCCEEEEEeCChHHHHh---CCEE------EEEeCCEEE
Confidence 8999999999888887655544333332 2 247999999999655443 4544 344555554
No 360
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.65 E-value=6.3e-16 Score=134.48 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=111.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHHh
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~~ 410 (628)
+++++-+++.+|.++++++. +|+++-|+||+|||||||+.-++|.. --.|
T Consensus 7 nvsl~l~g~cLLa~~n~Tia--------~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 7 NVSLRLPGSCLLANVNFTIA--------KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred eeeecCCCceEEEeeeEEec--------CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 47788899999999999999 99999999999999999999999943 1235
Q ss_pred cCCcccCCCCCc-----------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 411 IGCYVPAHFSTI-----------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 411 ~g~~v~~~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
+| .+.++.-.+ ...+..+++.|+.....+.+.++|+|++-+..+.+.+ ..|.+++
T Consensus 79 ~G-iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL 157 (213)
T COG4136 79 IG-ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALL 157 (213)
T ss_pred ee-eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceee
Confidence 55 222222111 1346678899999999999999999999776666665 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
+|||++.+|..-......-+...+.+.|.-++.+|||++
T Consensus 158 LDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 158 LDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred eCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999988777654445455566666778999999999943
No 361
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.64 E-value=7.9e-15 Score=165.38 Aligned_cols=145 Identities=12% Similarity=0.152 Sum_probs=99.9
Q ss_pred CEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhc
Q 006859 353 PLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQI 411 (628)
Q Consensus 353 ~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~ 411 (628)
++++.| +++++|+++++++. +|+.++|+||||||||||+++|+|.. +..++
T Consensus 354 ~vsf~~~~~~~vL~~i~l~i~--------~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 354 DLEILSPDGKTLAGPLNFTLP--------AGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred eeEEeccCCCeeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhhe
Confidence 355433 45778888888888 99999999999999999999999953 34456
Q ss_pred CCcccCCC----CCch-------------HHHHHHhhcC-----------CccccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 412 GCYVPAHF----STIR-------------VVDRIFTRMG-----------TVDNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 412 g~~v~~~~----~~i~-------------~~~~~~~~~~-----------~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
| |||++. +++. ...+.+...+ .+..+..+-..+|+|++|+..+++++ .+|
T Consensus 426 ~-~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 426 S-WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred E-EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 6 777664 2211 1111222222 22233334456999999998888876 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
++++||||++++|+.....+...+.+ + ..++|++++||.++...
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~-~-~~~~TvIiItHrl~~i~ 548 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNA-A-SRRQTTLMVTHQLEDLA 548 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-H-hCCCEEEEEecChHHHH
Confidence 99999999888887655544433322 2 24799999999965444
No 362
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=9.2e-16 Score=158.42 Aligned_cols=139 Identities=21% Similarity=0.260 Sum_probs=108.3
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhc----------CCcccCCCC--
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI----------GCYVPAHFS-- 420 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~----------g~~v~~~~~-- 420 (628)
.+++.||.+.+|.+-+++.. .|+.+|++||||+|||||||+|+- +|+ |+++++...
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~--------~GrRYGLvGrNG~GKsTLLRaia~----~~v~~f~veqE~~g~~t~~~~~~l 152 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLS--------RGRRYGLVGRNGIGKSTLLRAIAN----GQVSGFHVEQEVRGDDTEALQSVL 152 (582)
T ss_pred eeeeeecchhhhcCCceeee--------cccccceeCCCCCcHHHHHHHHHh----cCcCccCchhheeccchHHHhhhh
Confidence 47888999999999888888 999999999999999999999998 333 333332210
Q ss_pred --C-------------------chHHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChH
Q 006859 421 --T-------------------IRVVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSS 477 (628)
Q Consensus 421 --~-------------------i~~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~ 477 (628)
. ..+.++++..+|.. +....+..+||||-+-...+++++ .+|+|++|||| |+++
T Consensus 153 ~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP---TNhL 229 (582)
T KOG0062|consen 153 ESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP---TNHL 229 (582)
T ss_pred hccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC---cccc
Confidence 0 01223355566765 456678899999988666666655 88999999999 8999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
|-.+++| +.++|...+.|+++|+||.++.
T Consensus 230 Dv~av~W-Le~yL~t~~~T~liVSHDr~FL 258 (582)
T KOG0062|consen 230 DVVAVAW-LENYLQTWKITSLIVSHDRNFL 258 (582)
T ss_pred hhHHHHH-HHHHHhhCCceEEEEeccHHHH
Confidence 9898877 7888988889999999997653
No 363
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.63 E-value=1.3e-15 Score=171.52 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=106.5
Q ss_pred cCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhcCCccc
Q 006859 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQIGCYVP 416 (628)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~g~~v~ 416 (628)
.+.+++|++++..+. +|++++|+|||||||||||++|+|.. +..++| |+|
T Consensus 35 ~~~~~iL~~vs~~i~--------~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~-yv~ 105 (617)
T TIGR00955 35 RPRKHLLKNVSGVAK--------PGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISA-YVQ 105 (617)
T ss_pred cCccccccCCEEEEe--------CCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhce-eec
Confidence 346789999999999 99999999999999999999999942 122345 776
Q ss_pred CCCCCch---------------------------HHHHHHhhcCCccccccCcC------chHHHHHHHHHHHHhC-CCC
Q 006859 417 AHFSTIR---------------------------VVDRIFTRMGTVDNLESNSS------TFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 417 ~~~~~i~---------------------------~~~~~~~~~~~~~~~~~~~s------~~s~~~~~~~~i~~~~-~~~ 462 (628)
++...++ .++.++..+|+.+..+..++ .+|+|++|+..+++.+ .+|
T Consensus 106 Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p 185 (617)
T TIGR00955 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDP 185 (617)
T ss_pred cccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence 6542111 24556677777665555444 5999999877777665 899
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh--HHHHhh
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN--LSELAT 511 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~--l~~~~~ 511 (628)
+++++|||++|+|+.....+.. .++.+.+.|.|+++++|++. +.++.+
T Consensus 186 ~vlllDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvi~~~hq~~~~i~~~~D 235 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYSVVQ-VLKGLAQKGKTIICTIHQPSSELFELFD 235 (617)
T ss_pred CEEEeeCCCcchhHHHHHHHHH-HHHHHHhCCCEEEEEeCCCCHHHHHHhc
Confidence 9999999999998876666444 44556666999999999963 445444
No 364
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.63 E-value=7e-15 Score=163.69 Aligned_cols=145 Identities=20% Similarity=0.245 Sum_probs=103.8
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|+. .|+++++++++. +|+.++|+||||||||||+|+|+|+. +..
T Consensus 325 ~v~f~y~~~~~~il~~i~l~i~--------~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 325 GLSVAYPGRRAPALRPVSFTVP--------PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred EEEEECCCCCcccccceeEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHh
Confidence 47778864 479999999999 99999999999999999999999943 345
Q ss_pred hcCCcccCCCC----Cch-------------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFS----TIR-------------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~----~i~-------------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| ++|++.. ++. .....+...++.+. +..+...+|+|++|+..+++++ .
T Consensus 397 ~i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 397 QIA-WVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred heE-EEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 666 7776642 111 11223333344332 2234457999999988888776 7
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
+|+++++|||+++.|+.....+...+.+ + ..++|++++||+++...
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~-~-~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRA-L-AQGRTVLLVTHRLALAE 521 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHH-h-cCCCEEEEEecCHHHHH
Confidence 8999999999888888665554433332 2 25799999999965544
No 365
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.63 E-value=2e-15 Score=145.02 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH---------------H------------HHhcCCcccCCCCCc------hHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV---------------I------------LAQIGCYVPAHFSTI------RVVDR 427 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~---------------~------------~~~~g~~v~~~~~~i------~~~~~ 427 (628)
+| +++|+||||||||||+++|+|+. + .+++| +++++.... ...+.
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~vfq~~~~~~~~~~~~~~~~ 99 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT-LTFDNSDGRYSIISQGDVSE 99 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE-EEEEcCCCceeEEehhhHHH
Confidence 67 99999999999999999999864 0 12334 444433221 12344
Q ss_pred HHhhcCCccccccCcCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 428 IFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 428 ~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
++.. .+........+|+|++++..+++.+ .+++++++|||++|.|+.....+.. ++..+.+ +.+++++||
T Consensus 100 ~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~~tiIiitH 174 (197)
T cd03278 100 IIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-ETQFIVITH 174 (197)
T ss_pred HHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-CCEEEEEEC
Confidence 4444 3445677888999999988777654 4669999999999998866555433 4444443 689999999
Q ss_pred ChhHHHH
Q 006859 503 MENLSEL 509 (628)
Q Consensus 503 ~~~l~~~ 509 (628)
+++..+.
T Consensus 175 ~~~~~~~ 181 (197)
T cd03278 175 RKGTMEA 181 (197)
T ss_pred CHHHHhh
Confidence 9775543
No 366
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.62 E-value=2e-14 Score=161.30 Aligned_cols=160 Identities=17% Similarity=0.254 Sum_probs=112.7
Q ss_pred CCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 352 GPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
.++++.|+ .+|+++++++++. +|+.++|+||+||||||+++.|.++. +..
T Consensus 332 ~~vsf~y~~~~~vl~~is~~i~--------~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 332 ENVSFSYPGKKPVLKDISFSIE--------PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred EEEEEEcCCCCccccCceEEEc--------CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHH
Confidence 35888898 6899999999999 99999999999999999999999953 567
Q ss_pred hcCCcccCCCCCch-----------------HHHHH---------Hhhc--CCccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTIR-----------------VVDRI---------FTRM--GTVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i~-----------------~~~~~---------~~~~--~~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| +||++..-+. ...+. +..+ |.+..+..+-..+|+|++|+..+++++ .
T Consensus 404 ~I~-~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 404 RIG-IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred hcc-EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 788 8887652111 11111 2222 223333344567999999999988887 7
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|++++|||+++..|+.....+..++. .+. +++|+++++|.+ ..+.+ ++++ .++++|+++
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~-~l~-~~rT~iiIaHRl--sti~~-aD~I------iVl~~G~i~ 542 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALK-KLL-KGRTTLIIAHRL--STIKN-ADRI------IVLDNGRIV 542 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHH-HHh-cCCEEEEEeccH--hHHHh-CCEE------EEEECCEEE
Confidence 899999999988887765555444443 233 457999999994 33333 5555 344555543
No 367
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.61 E-value=1.8e-15 Score=153.82 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=95.4
Q ss_pred cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCC-----------------------------------------cccC-
Q 006859 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC-----------------------------------------YVPA- 417 (628)
Q Consensus 380 ~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~-----------------------------------------~v~~- 417 (628)
.+|.++||+||||-||||.+|+++|-. ....|- ++|.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel-~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGEL-KPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCcc-ccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 479999999999999999999999932 111110 1110
Q ss_pred CCCCc----------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHH
Q 006859 418 HFSTI----------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSC 486 (628)
Q Consensus 418 ~~~~i----------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~ 486 (628)
-.|++ ..++....++++...+++.++.+|+|.-|...|+..+ .+.++.++|||++-+|.......+ .+
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~a-r~ 255 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA-RV 255 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHH-HH
Confidence 01111 2456778888999999999999999987766666555 779999999996666655555533 45
Q ss_pred HHHHHhCCcEEEEEcCChhHHHHhhhCc
Q 006859 487 CEHLLSLKAYTIFASHMENLSELATIYP 514 (628)
Q Consensus 487 ~~~l~~~~~~vi~~tH~~~l~~~~~~~~ 514 (628)
+..+.+.+++|+++-||+.+.++...+.
T Consensus 256 Irel~~~~k~ViVVEHDLavLD~lsD~v 283 (591)
T COG1245 256 IRELAEDGKYVIVVEHDLAVLDYLSDFV 283 (591)
T ss_pred HHHHhccCCeEEEEechHHHHHHhhhee
Confidence 6667777999999999987766655443
No 368
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.60 E-value=1.4e-14 Score=161.23 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=99.1
Q ss_pred CEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhc
Q 006859 353 PLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQI 411 (628)
Q Consensus 353 ~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~ 411 (628)
++++.|+. .++|+++++++. +|+.++|+||||||||||+++|+|+. +..++
T Consensus 339 ~vsf~Y~~~~~vL~~isl~i~--------~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 339 DLSFGYPGSPPVLDGVSLDLP--------PGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred EEEEecCCCCceeecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence 47788864 578999999999 99999999999999999999999943 23466
Q ss_pred CCcccCCCC----Cch-------------HHHHHHhhcCCccccc-----------cCcCchHHHHHHHHHHHHhC-CCC
Q 006859 412 GCYVPAHFS----TIR-------------VVDRIFTRMGTVDNLE-----------SNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 412 g~~v~~~~~----~i~-------------~~~~~~~~~~~~~~~~-----------~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
| |||++.. ++. ...+.+...++.+.+. .+-..+|+|++|+..+++++ .+|
T Consensus 411 ~-~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 411 S-VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred E-EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 6 7777642 221 1122333334433222 22345999999988888776 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
+++++|||+++.|+.....+...+.+ + ..++|++++||.
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~-~-~~~~TvIiItHr 528 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLA-A-LSGKTVVVITHH 528 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH-h-cCCCEEEEEecC
Confidence 99999999888877554443333322 1 247999999997
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=99.60 E-value=3.7e-15 Score=180.02 Aligned_cols=136 Identities=14% Similarity=0.178 Sum_probs=99.1
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCcccCCC
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCYVPAHF 419 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~v~~~~ 419 (628)
++++|++++..+. +|++++|+|||||||||||++|+|.. ....+| |+++..
T Consensus 892 ~~~iL~~vs~~i~--------~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~ig-yv~Q~d 962 (1470)
T PLN03140 892 RLQLLREVTGAFR--------PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISG-YCEQND 962 (1470)
T ss_pred CceEeeCcEEEEE--------CCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheE-EEcccc
Confidence 4467777777777 99999999999999999999999942 112244 666542
Q ss_pred CCc---h------------------------HHHHHHhhcCCccccccCc-----CchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 420 STI---R------------------------VVDRIFTRMGTVDNLESNS-----STFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 420 ~~i---~------------------------~~~~~~~~~~~~~~~~~~~-----s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
... . .++.++..+++.+..+..+ ..+|+|++|+..|+..+ .+|++++
T Consensus 963 ~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~ 1042 (1470)
T PLN03140 963 IHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1042 (1470)
T ss_pred ccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEE
Confidence 111 0 1334566667765555443 57999999887777665 8999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
||||++|+|+.....+. .++..+.+.|.+++++||+++
T Consensus 1043 LDEPTsgLD~~~a~~v~-~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1043 MDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred EeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCCC
Confidence 99999999986655543 355556677999999999976
No 370
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.59 E-value=1.1e-14 Score=176.90 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=106.7
Q ss_pred CCEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------
Q 006859 352 GPLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------- 406 (628)
.++++.|+. +++|+++++++. +|++++|+||||||||||+++|+|+.
T Consensus 386 ~nVsf~Y~~~~~~~vL~~isl~i~--------~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 386 KNVRFHYDTRKDVEIYKDLNFTLT--------EGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred EEEEEEcCCCCCCceeccceEEEc--------CCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHH
Confidence 357888874 469999999999 99999999999999999999999953
Q ss_pred HHHhcCCcccCCCCCch--HHHH---------------------------------------------------------
Q 006859 407 ILAQIGCYVPAHFSTIR--VVDR--------------------------------------------------------- 427 (628)
Q Consensus 407 ~~~~~g~~v~~~~~~i~--~~~~--------------------------------------------------------- 427 (628)
+..++| +||++...+. +.+.
T Consensus 458 lr~~Ig-~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 536 (1466)
T PTZ00265 458 WRSKIG-VVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIE 536 (1466)
T ss_pred HHHhcc-EecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhh
Confidence 234577 7776542111 1111
Q ss_pred ---------------HHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHH
Q 006859 428 ---------------IFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGF 480 (628)
Q Consensus 428 ---------------~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~ 480 (628)
.+...++.+. +....+.+|+|++|+..+++++ .+|+++|||||++++|+....
T Consensus 537 ~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~ 616 (1466)
T PTZ00265 537 MRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616 (1466)
T ss_pred cccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 1112222222 2234567999999988888776 889999999999998886555
Q ss_pred HHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcce
Q 006859 481 AIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 481 ~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
.+.. .++.+.+ .+.|++++||++.... .++++
T Consensus 617 ~i~~-~L~~~~~~~g~TvIiIsHrls~i~---~aD~I 649 (1466)
T PTZ00265 617 LVQK-TINNLKGNENRITIIIAHRLSTIR---YANTI 649 (1466)
T ss_pred HHHH-HHHHHhhcCCCEEEEEeCCHHHHH---hCCEE
Confidence 4433 4444443 5899999999965443 45555
No 371
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.58 E-value=1e-14 Score=176.92 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=100.3
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCcccCCC
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCYVPAHF 419 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~v~~~~ 419 (628)
.+++|++++..+. +|++++|+|||||||||||++|+|.. +..++| |+|++.
T Consensus 775 ~~~iL~~vs~~i~--------~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~-yv~Q~~ 845 (1394)
T TIGR00956 775 KRVILNNVDGWVK--------PGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG-YVQQQD 845 (1394)
T ss_pred CcEeeeCCEEEEE--------CCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee-eecccc
Confidence 3567777777777 99999999999999999999999953 112345 666543
Q ss_pred CCc---------------------------hHHHHHHhhcCCccccccCcC----chHHHHHHHHHHHHhC-CCCc-EEE
Q 006859 420 STI---------------------------RVVDRIFTRMGTVDNLESNSS----TFMTEMKETAFVMQNV-SERS-LIV 466 (628)
Q Consensus 420 ~~i---------------------------~~~~~~~~~~~~~~~~~~~~s----~~s~~~~~~~~i~~~~-~~~~-l~l 466 (628)
..+ ..+++++..+++.+..+..++ .+|+|++|+..++..+ .+|+ +++
T Consensus 846 ~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLl 925 (1394)
T TIGR00956 846 LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLF 925 (1394)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEE
Confidence 110 012445666777666666555 6999999888777665 7885 999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
||||++|+|+.....+ ..+++.+++.|+++++++|++..
T Consensus 926 LDEPTsgLD~~~~~~i-~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 926 LDEPTSGLDSQTAWSI-CKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred EcCCCCCCCHHHHHHH-HHHHHHHHHcCCEEEEEecCCCH
Confidence 9999999998665553 34555566678999999999763
No 372
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.57 E-value=2.3e-14 Score=148.99 Aligned_cols=202 Identities=15% Similarity=0.162 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEc---C--ccCcc--ccccc
Q 006859 298 ICLEALVDAIRE-DVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDG---G--RHPIL--ESIHN 369 (628)
Q Consensus 298 ~~~~~l~~~~~~-~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~--~~~~l--~~~~~ 369 (628)
.....++..+.. +...-.++......+|.+ ..-.. .. +.+ ....+.+.+ | .+|++ .++++
T Consensus 330 ~~~K~~ia~~g~g~a~~~rka~s~~K~~~km-~~~gL-~e---------k~~-~~k~l~~~f~~vg~~p~pvi~~~nv~F 397 (614)
T KOG0927|consen 330 AHMKDLIARFGHGSAKLGRKAQSKEKTLDKM-EADGL-TE---------KVV-GEKVLSFRFPEVGKIPPPVIMVQNVSF 397 (614)
T ss_pred HHhhHHHHhhcccchhhhHHHhhhhhhHHHH-hhccc-cc---------ccc-CCceEEEEcccccCCCCCeEEEecccc
Confidence 345555555444 556667777778888877 32111 11 111 111133322 1 13332 23333
Q ss_pred ceee-----cccccc-cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC------------------------
Q 006859 370 DFIP-----NNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF------------------------ 419 (628)
Q Consensus 370 ~~~~-----~~~~l~-~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~------------------------ 419 (628)
.+.. ++++|. +.+..++++||||+|||||||++.|.. ...+|...|...
T Consensus 398 ~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~ 476 (614)
T KOG0927|consen 398 GYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFM 476 (614)
T ss_pred CCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhcCcchhHHHHH
Confidence 3322 233333 378899999999999999999999932 222221111111
Q ss_pred -------CCchHHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 006859 420 -------STIRVVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQN-VSERSLIVMDELGRATSSSDGFAIAWSCCEHL 490 (628)
Q Consensus 420 -------~~i~~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~-~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l 490 (628)
-.......++.++|+. +....+.+.+|.|++.+...+.. ...|.+++||||+.|.|... ..++.+++
T Consensus 477 ~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~t----id~laeai 552 (614)
T KOG0927|consen 477 MPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET----IDALAEAI 552 (614)
T ss_pred HHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchh----HHHHHHHH
Confidence 1223445678888987 66778899999999866555554 48999999999977776533 23455666
Q ss_pred HhCCcEEEEEcCChhHH-HHhhhCcce
Q 006859 491 LSLKAYTIFASHMENLS-ELATIYPNV 516 (628)
Q Consensus 491 ~~~~~~vi~~tH~~~l~-~~~~~~~~v 516 (628)
.+...+++++|||..+. ++++..+.+
T Consensus 553 Ne~~Ggvv~vSHDfrlI~qVaeEi~~c 579 (614)
T KOG0927|consen 553 NEFPGGVVLVSHDFRLISQVAEEIWVC 579 (614)
T ss_pred hccCCceeeeechhhHHHHHHHHhHhh
Confidence 77788999999997654 666666544
No 373
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.56 E-value=1e-14 Score=169.61 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=125.9
Q ss_pred CEEEEcCccC-cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHH
Q 006859 353 PLAIDGGRHP-ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~~~-~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~ 409 (628)
++.+.|+... +++++++.+. +|++.|+.|||||||||++|++.|.. ...
T Consensus 569 ~L~k~y~~~~~Av~~ls~~V~--------~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 569 NLSKVYGGKDGAVRGLSFAVP--------PGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceeeeecchhhhhcceEEEec--------CCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 4777777655 8888888888 99999999999999999999999943 567
Q ss_pred hcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHH-HHHHhCCCCcE
Q 006859 410 QIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETA-FVMQNVSERSL 464 (628)
Q Consensus 410 ~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~-~i~~~~~~~~l 464 (628)
++| |.|+...-.. .++..+..+++.+..++..+++|+|+++.. .+++.+.+|++
T Consensus 641 ~iG-yCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 641 QLG-YCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred hcc-cCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 789 9998743211 345667778899999999999999998654 44555689999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH-HhhhCcceeEEEEEEEE
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE-LATIYPNVKILHFYVVI 525 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~-~~~~~~~v~~~~~~~~~ 525 (628)
++||||+.|.||.... ..|.++..+.+.|..++++||.++-++ ++++..-+..+++.+..
T Consensus 720 i~LDEPstGmDP~arr-~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciG 780 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARR-HLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIG 780 (885)
T ss_pred EEecCCCCCCCHHHHH-HHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEec
Confidence 9999999999995544 478888888887779999999965443 55555545555555443
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.9e-14 Score=128.07 Aligned_cols=144 Identities=21% Similarity=0.292 Sum_probs=100.8
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------------HH-Hh
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------------IL-AQ 410 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------------~~-~~ 410 (628)
+-|+++++++++. .|+++++-||+|+||||+||++-+.. +. .-
T Consensus 23 ~LpV~~~vslsV~--------aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~T 94 (235)
T COG4778 23 RLPVLRNVSLSVN--------AGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTT 94 (235)
T ss_pred EeeeeeceeEEec--------CccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhh
Confidence 4588999999998 99999999999999999999999843 00 01
Q ss_pred cCCcccCCCCCch------------------------HHHHHHhhcCCcccc-ccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 411 IGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNL-ESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 411 ~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~-~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
+| ||.+.-..++ ....+++++.+.+.+ .-.+++||+|.+|+..|++.. .+..+
T Consensus 95 iG-yVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pI 173 (235)
T COG4778 95 IG-YVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPI 173 (235)
T ss_pred hH-HHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCce
Confidence 22 2211100000 223456777766543 557899999999999999876 78999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH-HhhhC
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE-LATIY 513 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~-~~~~~ 513 (628)
++||||++.+|...... ...++..-+..|+.++=+-||.+..+ .+++.
T Consensus 174 LLLDEPTasLDa~Nr~v-Vveli~e~Ka~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 174 LLLDEPTASLDATNRAV-VVELIREAKARGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred EEecCCcccccccchHH-HHHHHHHHHhcCceEEEeeccHHHHHHHhhhe
Confidence 99999977666544333 22344444567999999999987754 44443
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.55 E-value=2.9e-15 Score=133.70 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=111.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH--------------------------HHHhc-------------CCcccCCCCC
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV--------------------------ILAQI-------------GCYVPAHFST 421 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~--------------------------~~~~~-------------g~~v~~~~~~ 421 (628)
.|+++-++|||||||||||-.++|+. +++|- ..+.|+ +..
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~-~~~ 102 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD-KTR 102 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch-HHH
Confidence 89999999999999999999999943 33321 112222 223
Q ss_pred chHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC--------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC
Q 006859 422 IRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV--------SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL 493 (628)
Q Consensus 422 i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~--------~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~ 493 (628)
....+.+-..+++.|.+.+..+.+|+|.-|+..++..+ ....++++|||.+++|.....+ ...+++.+...
T Consensus 103 a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~a-Ldrll~~~c~~ 181 (248)
T COG4138 103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA-LDRLLSALCQQ 181 (248)
T ss_pred HHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHH-HHHHHHHHHhC
Confidence 33556677788999999999999999987766655443 2357999999988887654443 56788888899
Q ss_pred CcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCH
Q 006859 494 KAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPS 558 (628)
Q Consensus 494 ~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~ 558 (628)
|.+|+++.||.+ .-....+.+.... .| .-+..|..+++..+-.+++.+|...
T Consensus 182 G~~vims~HDLN--hTLrhA~~~wLL~------rG-----~l~~~G~~~eVlt~~vL~q~fg~~f 233 (248)
T COG4138 182 GLAIVMSSHDLN--HTLRHAHRAWLLK------RG-----KLLASGRREEVLTPPVLAQAYGMNF 233 (248)
T ss_pred CcEEEEeccchh--hHHHHHHHHHHHh------cC-----eEEeecchhhhcChHHHHHHhccce
Confidence 999999999943 3222222221111 11 2234566666666667777666543
No 376
>PLN03232 ABC transporter C family member; Provisional
Probab=99.55 E-value=1e-13 Score=169.88 Aligned_cols=159 Identities=15% Similarity=0.191 Sum_probs=110.0
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|.. +|+|+++++++. +|+.+||+||+|||||||+++|.|+. +..
T Consensus 1239 nVsf~Y~~~~~~vL~~isl~I~--------~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1239 DVHLRYRPGLPPVLHGLSFFVS--------PSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred EEEEEECCCCCcccccceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 47788843 579999999999 99999999999999999999999953 456
Q ss_pred hcCCcccCCC----CCch------------HHHHHHhhcCCc-----------cccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHF----STIR------------VVDRIFTRMGTV-----------DNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~----~~i~------------~~~~~~~~~~~~-----------~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+++ +||++. |++. ...+.+...++. ..+..+-+.+|+|++|+..+++++ .+
T Consensus 1311 ~i~-iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1311 VLS-IIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred hcE-EECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 677 888774 2221 112223333333 233334457999999999888887 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
|++++|||++++.|+.....+...+.+ . ..++|+++++|.++ .+.+ +++| +++++|+++
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~~L~~-~-~~~~TvI~IAHRl~--ti~~-~DrI------lVL~~G~iv 1448 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIRE-E-FKSCTMLVIAHRLN--TIID-CDKI------LVLSSGQVL 1448 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHH-H-cCCCEEEEEeCCHH--HHHh-CCEE------EEEECCEEE
Confidence 999999999888776543333222222 1 24799999999954 3332 5655 444555554
No 377
>PTZ00243 ABC transporter; Provisional
Probab=99.55 E-value=2.6e-14 Score=174.87 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=99.0
Q ss_pred CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCCC----ch---
Q 006859 359 GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFST----IR--- 423 (628)
Q Consensus 359 ~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~~----i~--- 423 (628)
+..++++++++++. +|++++|+|||||||||||++|+|.. +-.++| |+|++... +.
T Consensus 671 ~~~~iL~~isl~i~--------~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~-yv~Q~~~l~~~Tv~enI 741 (1560)
T PTZ00243 671 EPKVLLRDVSVSVP--------RGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIA-YVPQQAWIMNATVRGNI 741 (1560)
T ss_pred CCceeEeeeEEEEC--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEE-EEeCCCccCCCcHHHHH
Confidence 45567777777777 99999999999999999999999943 123455 66655311 10
Q ss_pred ---------HHHH---------HHhhc--CCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHH
Q 006859 424 ---------VVDR---------IFTRM--GTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAI 482 (628)
Q Consensus 424 ---------~~~~---------~~~~~--~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~ 482 (628)
...+ .+..+ |....+......+|+|++|+..+++++ .+|++++||||+++.|+.....+
T Consensus 742 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 742 LFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV 821 (1560)
T ss_pred HcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 0111 12222 333444566778999999988888877 88999999999999988666655
Q ss_pred HHHHHHHHHhCCcEEEEEcCChhHHHH
Q 006859 483 AWSCCEHLLSLKAYTIFASHMENLSEL 509 (628)
Q Consensus 483 ~~~~~~~l~~~~~~vi~~tH~~~l~~~ 509 (628)
...++.... .++|++++||+.++...
T Consensus 822 ~~~~~~~~~-~~~TvIlvTH~~~~~~~ 847 (1560)
T PTZ00243 822 VEECFLGAL-AGKTRVLATHQVHVVPR 847 (1560)
T ss_pred HHHHHHHhh-CCCEEEEEeCCHHHHHh
Confidence 444332222 47999999999776554
No 378
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.3e-13 Score=149.14 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=102.5
Q ss_pred CEEEEcC---ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGG---RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~---~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
++++.|. .+|+++|+++++. +|++++++||||+||||+..+|-.+. +.
T Consensus 470 ~VsFaYP~Rp~~~Vlk~lsfti~--------pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 470 DVSFAYPTRPDVPVLKNLSFTIR--------PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred EeeeecCCCCCchhhcCceeeeC--------CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 4667775 4679999999999 99999999999999999999998832 33
Q ss_pred HhcCCcccCCC----CCch----------------------HHHHHHhhc--CCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHF----STIR----------------------VVDRIFTRM--GTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~----~~i~----------------------~~~~~~~~~--~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| +|-+++ +++. -.+..+..+ |-+......-+.+|||+||+..|++++
T Consensus 542 ~~Ig-~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 542 RKIG-LVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHee-eeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 4555 554332 1111 001112221 111222334457999999999999887
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH--hCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEe
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLL--SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~--~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 533 (628)
.+|.++||||.++.+ |..+ ...+.+.+. -.+.||+++.|.+.-.+-++ .| +++++|++.-.
T Consensus 621 r~P~VLILDEATSAL---DaeS-E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad---~I------vvi~~G~V~E~ 683 (716)
T KOG0058|consen 621 RNPRVLILDEATSAL---DAES-EYLVQEALDRLMQGRTVLVIAHRLSTVRHAD---QI------VVIDKGRVVEM 683 (716)
T ss_pred cCCCEEEEechhhhc---chhh-HHHHHHHHHHhhcCCeEEEEehhhhHhhhcc---EE------EEEcCCeEEec
Confidence 889999999995554 4443 122333332 13599999999955444443 22 56677766543
No 379
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.55 E-value=1.3e-13 Score=137.14 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=63.4
Q ss_pred HHhhcCCcc-ccccCcCchHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 428 IFTRMGTVD-NLESNSSTFMTEMKETAFVMQNVS----ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 428 ~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~~----~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
.+..+|+.. .+.+..+++|+|++|+..+++.+. .|+++++|||+.|+++.+...+.. ++..+.+.|.+++++||
T Consensus 152 ~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~tvIiitH 230 (261)
T cd03271 152 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNTVVVIEH 230 (261)
T ss_pred HHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeC
Confidence 345667766 578888999999999888887763 379999999999999977666444 55666677999999999
Q ss_pred ChhHHHH
Q 006859 503 MENLSEL 509 (628)
Q Consensus 503 ~~~l~~~ 509 (628)
++++...
T Consensus 231 ~~~~i~~ 237 (261)
T cd03271 231 NLDVIKC 237 (261)
T ss_pred CHHHHHh
Confidence 9765543
No 380
>PLN03130 ABC transporter C family member; Provisional
Probab=99.54 E-value=8.3e-14 Score=170.81 Aligned_cols=159 Identities=16% Similarity=0.223 Sum_probs=109.6
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|.. .|+|+++++++. +|+.+||+||+|||||||+++|.++. +..
T Consensus 1242 nVsf~Y~~~~~~VL~~is~~I~--------~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1242 DVVLRYRPELPPVLHGLSFEIS--------PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred EEEEEeCCCCCceecceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHh
Confidence 47778853 479999999999 99999999999999999999999954 456
Q ss_pred hcCCcccCCC----CCch------------HHHHHHhhcCCc-----------cccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHF----STIR------------VVDRIFTRMGTV-----------DNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~----~~i~------------~~~~~~~~~~~~-----------~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
++| +||++. |++. ...+.+...++. ..+..+-+.+|+|++|+..+++++ .+
T Consensus 1314 ~Is-iVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1314 VLG-IIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred ccE-EECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 777 888775 2221 111223333332 233334457999999999888877 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
|++++|||+++..|......+...+.+ . ..++|+++++|.++ .+.+ +++| +++++|+++
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~-~-~~~~TvI~IAHRL~--tI~~-~DrI------lVLd~G~Iv 1451 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIRE-E-FKSCTMLIIAHRLN--TIID-CDRI------LVLDAGRVV 1451 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHH-H-CCCCEEEEEeCChH--HHHh-CCEE------EEEECCEEE
Confidence 999999999887776443333222222 2 24799999999954 3332 5655 344555554
No 381
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.53 E-value=5.3e-14 Score=172.07 Aligned_cols=139 Identities=16% Similarity=0.170 Sum_probs=94.1
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCCCc--hHH-----
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFSTI--RVV----- 425 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~~i--~~~----- 425 (628)
+++|+++++++. +|++++|+|||||||||||++|+|.. +-.++| |+|+...-+ .+.
T Consensus 439 ~~~l~~i~l~i~--------~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~ia-yv~Q~~~l~~~Ti~eNI~~ 509 (1490)
T TIGR01271 439 TPVLKNISFKLE--------KGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRIS-FSPQTSWIMPGTIKDNIIF 509 (1490)
T ss_pred CcceeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEE-EEeCCCccCCccHHHHHHh
Confidence 456666666666 99999999999999999999999943 112334 555442111 011
Q ss_pred ---------HHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHH
Q 006859 426 ---------DRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAW 484 (628)
Q Consensus 426 ---------~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~ 484 (628)
...+...++.+ .+......+|+|++|+..+++++ .+|++++||||+++.|+.....+..
T Consensus 510 g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~ 589 (1490)
T TIGR01271 510 GLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589 (1490)
T ss_pred ccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 11111112211 12334568999999998888877 8899999999999999877776655
Q ss_pred HHHHHHHhCCcEEEEEcCChhHHHH
Q 006859 485 SCCEHLLSLKAYTIFASHMENLSEL 509 (628)
Q Consensus 485 ~~~~~l~~~~~~vi~~tH~~~l~~~ 509 (628)
.++..+. .++|++++||+++....
T Consensus 590 ~~l~~~~-~~~tvilvtH~~~~~~~ 613 (1490)
T TIGR01271 590 SCLCKLM-SNKTRILVTSKLEHLKK 613 (1490)
T ss_pred HHHHHHh-cCCeEEEEeCChHHHHh
Confidence 4444333 48999999999765543
No 382
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.51 E-value=1e-13 Score=158.24 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=104.8
Q ss_pred CEEEEcCccC---cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGGRHP---ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~~~---~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
++.++|..+| +|+++++.++ +|+.++|+|||||||||++++|.+.. +.
T Consensus 355 nV~FsYPsRpdv~Il~g~sl~i~--------~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 355 NVCFSYPSRPDVKILKGVSLKIP--------SGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred EEEecCCCCCcchhhCCeEEEeC--------CCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence 5777887554 7888888888 99999999999999999999999943 45
Q ss_pred HhcCCcccCCCCCch--HH---------------HHHHhhcC-----------CccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHFSTIR--VV---------------DRIFTRMG-----------TVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~~~i~--~~---------------~~~~~~~~-----------~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| .|.+++.-+. +. .+.....+ .+-..-.+--.+|+|+||+..|++++
T Consensus 427 ~~ig-lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 427 SQIG-LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred hhcC-eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 5667 6655431110 00 00110011 11111122234899999999998877
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEE
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVI 525 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~ 525 (628)
.+|+++||||+++++|+..... ....++.. ..|.|.++++|. |..+.+ .+.+..++-+..+
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~-Vq~ALd~~-~~grTTivVaHR--LStIrn-aD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERV-VQEALDKA-SKGRTTIVVAHR--LSTIRN-ADKIAVMEEGKIV 566 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHH-HHHHHHHh-hcCCeEEEEeee--hhhhhc-cCEEEEEECCEEE
Confidence 8899999999988888754333 33333332 357899999999 555554 5666555554443
No 383
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.51 E-value=1e-13 Score=168.43 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=99.6
Q ss_pred CEEEEcC---ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------
Q 006859 353 PLAIDGG---RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------- 406 (628)
Q Consensus 353 ~l~~~~~---~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------- 406 (628)
+++++|. .+|+|+++++++. +|+.++|+||+||||||++++|.|+.
T Consensus 1170 nVsF~Y~~~~~~~vL~~lsl~i~--------~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1170 DVNFRYISRPNVPIYKDLTFSCD--------SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred EEEEECCCCCCCccccCeeEEEc--------CCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 5788885 3579999999999 99999999999999999999999931
Q ss_pred ----------------------------------------------------HHHhcCCcccCCCC----Cch-------
Q 006859 407 ----------------------------------------------------ILAQIGCYVPAHFS----TIR------- 423 (628)
Q Consensus 407 ----------------------------------------------------~~~~~g~~v~~~~~----~i~------- 423 (628)
+..++| +||++.. ++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~-~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS-IVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhcc-EeCCCCccccccHHHHHhcCC
Confidence 122344 5554431 111
Q ss_pred ------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHH
Q 006859 424 ------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWS 485 (628)
Q Consensus 424 ------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~ 485 (628)
-+.......++.+. +..+-..+|+|++|+..|++++ .+|+++|||||++.+|+.....+..+
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 11112222233222 2223456999999998888877 88999999999888877554443333
Q ss_pred HHHHHH-hCCcEEEEEcCChhHHHH
Q 006859 486 CCEHLL-SLKAYTIFASHMENLSEL 509 (628)
Q Consensus 486 ~~~~l~-~~~~~vi~~tH~~~l~~~ 509 (628)
+ +.+. ..++|+|++||.+.....
T Consensus 1401 L-~~~~~~~~~TvIiIaHRlsti~~ 1424 (1466)
T PTZ00265 1401 I-VDIKDKADKTIITIAHRIASIKR 1424 (1466)
T ss_pred H-HHHhccCCCEEEEEechHHHHHh
Confidence 3 3333 358999999999654443
No 384
>PLN03232 ABC transporter C family member; Provisional
Probab=99.50 E-value=4.7e-13 Score=164.10 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=102.7
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------HHHhcCCcccCCC-
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------ILAQIGCYVPAHF- 419 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------~~~~~g~~v~~~~- 419 (628)
++++.|.. +|+|+++++++. +|+.++|+||+|||||||+++|.|.. +..+++ |||++.
T Consensus 619 ~vsF~y~~~~~~~vL~~inl~i~--------~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Ia-yv~Q~p~ 689 (1495)
T PLN03232 619 NGYFSWDSKTSKPTLSDINLEIP--------VGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVA-YVPQVSW 689 (1495)
T ss_pred eeEEEcCCCCCCceeeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEE-EEcCccc
Confidence 36667753 678999998888 99999999999999999999999933 223344 565553
Q ss_pred ---CCch------------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 420 ---STIR------------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 420 ---~~i~------------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
+++. ...+.+...++.++ +..+-..+|||++|+..+++++ .++++++||||++
T Consensus 690 Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptS 769 (1495)
T PLN03232 690 IFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLS 769 (1495)
T ss_pred cccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111 11222222232222 2233346999999999999887 8899999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
+.|+.....+...++... ..++|++++||..+....++
T Consensus 770 aLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD 807 (1495)
T PLN03232 770 ALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMD 807 (1495)
T ss_pred ccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCC
Confidence 888766665554444332 25789999999976544433
No 385
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.50 E-value=1.5e-13 Score=168.15 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=109.1
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHh
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~ 410 (628)
+++++|.. .++|+++++++. +|+.+||+|++|||||||+++|.|+. +..+
T Consensus 1222 nVs~~Y~~~~~~vL~~is~~I~--------~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1222 GLTAKYTEAGRAVLQDLSFSVE--------GGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred EEEEEeCCCCcceeeccEEEEc--------CCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhc
Confidence 47777853 578999999999 99999999999999999999999964 4456
Q ss_pred cCCcccCCC----CCch------------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 411 IGCYVPAHF----STIR------------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 411 ~g~~v~~~~----~~i~------------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
++ ++|++. |++. .....+.+.++.+. +..+-..||+|++|+..+++++ .++
T Consensus 1294 is-~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1294 FG-VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred eE-EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 66 788765 2222 11223444444332 2223346999999998888876 789
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++++||||+++.|+.....+...+.+ . ..++|+|++||.++. +.+ +++| +++++|+++
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~-~-~~~~TvI~IaHRl~t--i~~-~DrI------lvL~~G~iv 1430 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQ-S-FSNCTVILSEHRVEA--LLE-CQQF------LVIEGSSVK 1430 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH-H-cCCCEEEEEecCHHH--HHh-CCEE------EEEECCEEE
Confidence 99999999888877543333332222 1 247999999999543 332 5655 344555543
No 386
>PLN03130 ABC transporter C family member; Provisional
Probab=99.50 E-value=5.6e-13 Score=163.60 Aligned_cols=148 Identities=15% Similarity=0.189 Sum_probs=102.1
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH---------HHhcCCcccCCC-
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------LAQIGCYVPAHF- 419 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------~~~~g~~v~~~~- 419 (628)
++++.|+. +|+|+++++++. +|+.++|+||+|||||||+++|.|..- ..+++ |||++.
T Consensus 619 nvsf~y~~~~~~~vL~~inl~i~--------~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Ia-yv~Q~p~ 689 (1622)
T PLN03130 619 NGYFSWDSKAERPTLSNINLDVP--------VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVA-YVPQVSW 689 (1622)
T ss_pred eeEEEccCCCCCceeeceeEEec--------CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEE-EEcCccc
Confidence 36666653 678999888888 999999999999999999999999431 12344 565553
Q ss_pred ---CCch------------HHHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 420 ---STIR------------VVDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 420 ---~~i~------------~~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
+++. ...+.+...++.+ .+..+-..+|||+||+..+++++ .++++++||||++
T Consensus 690 LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptS 769 (1622)
T PLN03130 690 IFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769 (1622)
T ss_pred cCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 2211 1222222223222 22233446999999999998887 8899999999988
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
+.|+..+..+...++..+. .++|++++||..+....+
T Consensus 770 ALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~a 806 (1622)
T PLN03130 770 ALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQV 806 (1622)
T ss_pred ccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhC
Confidence 8887666655444444332 579999999997554443
No 387
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.50 E-value=8.4e-14 Score=168.95 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=98.8
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------H---H----HhcCCcc
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------I---L----AQIGCYV 415 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------~---~----~~~g~~v 415 (628)
.+++|++++..+. +|++++|+||||||||||||+|+|.. + . ..+| |+
T Consensus 73 ~~~iL~~vs~~i~--------~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~-yv 143 (1394)
T TIGR00956 73 TFDILKPMDGLIK--------PGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVV-YN 143 (1394)
T ss_pred cceeeeCCEEEEE--------CCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeE-Ee
Confidence 3568999999999 99999999999999999999999952 0 0 1144 55
Q ss_pred cCCCCCch--------------------------------HHHHHHhhcCCccccccC-----cCchHHHHHHHHHHHHh
Q 006859 416 PAHFSTIR--------------------------------VVDRIFTRMGTVDNLESN-----SSTFMTEMKETAFVMQN 458 (628)
Q Consensus 416 ~~~~~~i~--------------------------------~~~~~~~~~~~~~~~~~~-----~s~~s~~~~~~~~i~~~ 458 (628)
+++...++ ..+.++..+|+.+..+.. ...+|+|++|+..+++.
T Consensus 144 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~a 223 (1394)
T TIGR00956 144 AETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEA 223 (1394)
T ss_pred ccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHH
Confidence 54321100 123356667776655433 45699999988888766
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCCh
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHME 504 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~ 504 (628)
+ .+|+++++|||++|+|+.....+.. +++.+.+ .|.++++++|++
T Consensus 224 L~~~p~vlllDEPTsgLD~~~~~~i~~-~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 224 SLGGAKIQCWDNATRGLDSATALEFIR-ALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred HHhCCCEEEEeCCCCCcCHHHHHHHHH-HHHHHHHhcCCEEEEEecCC
Confidence 5 8999999999999999877666544 4555654 589999999994
No 388
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.50 E-value=3.3e-13 Score=165.68 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=101.7
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCC--
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFS-- 420 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~-- 420 (628)
++++.|+. .++++++++++. +|+.++|+||||||||||+++|+|.. +-.++| |+|++..
T Consensus 641 ~~~~~~~~~~~~~l~~isl~i~--------~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~-yv~Q~~~l~ 711 (1522)
T TIGR00957 641 NATFTWARDLPPTLNGITFSIP--------EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVA-YVPQQAWIQ 711 (1522)
T ss_pred EeEEEcCCCCCceeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEE-EEcCCcccc
Confidence 36666753 578999888888 99999999999999999999999943 112345 6665431
Q ss_pred --Cch------------HHHHHHhhcCC-----------ccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCC
Q 006859 421 --TIR------------VVDRIFTRMGT-----------VDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRAT 474 (628)
Q Consensus 421 --~i~------------~~~~~~~~~~~-----------~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt 474 (628)
++. ...+.+...++ ...+......+|+|++|+..+++++ .+|++++||||+++.
T Consensus 712 ~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 712 NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 110 11111111111 1123445667999999999888877 889999999999988
Q ss_pred ChHHHHHHHHHHHHHH-HhCCcEEEEEcCChhHHHH
Q 006859 475 SSSDGFAIAWSCCEHL-LSLKAYTIFASHMENLSEL 509 (628)
Q Consensus 475 ~~~~~~~~~~~~~~~l-~~~~~~vi~~tH~~~l~~~ 509 (628)
|+.....+...+.+.. ...++|++++||+.+....
T Consensus 792 D~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~ 827 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ 827 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh
Confidence 8876665555444311 1247899999999765543
No 389
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.50 E-value=2.2e-14 Score=129.82 Aligned_cols=99 Identities=25% Similarity=0.466 Sum_probs=71.1
Q ss_pred ccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHhcCCcccCCCCC-
Q 006859 364 LESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQIGCYVPAHFST- 421 (628)
Q Consensus 364 l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~~g~~v~~~~~~- 421 (628)
|+++++++. +|++++|+||||||||||+++|+|.. ....++ ++|+....
T Consensus 1 L~~v~~~i~--------~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~ 71 (137)
T PF00005_consen 1 LKNVSLEIK--------PGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIG-YVPQDPQLF 71 (137)
T ss_dssp EEEEEEEEE--------TTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEE-EEESSHCHH
T ss_pred CCceEEEEc--------CCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccc-ccccccccc
Confidence 345566666 99999999999999999999999943 233444 55554211
Q ss_pred ----ch------HHHHHHhhcCCccccccCc----CchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 422 ----IR------VVDRIFTRMGTVDNLESNS----STFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 422 ----i~------~~~~~~~~~~~~~~~~~~~----s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
+. ....++..++..+...... ..+|+|++++..+++++ .+|+++++|||+
T Consensus 72 ~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 72 PGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp TTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11 2344566666655444444 89999999887777665 889999999995
No 390
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.49 E-value=7.1e-13 Score=162.75 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=109.1
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|.. .++|+++++++. +|+.+||+|++|||||||+++|.++. +..
T Consensus 1289 nVsf~Y~~~~~~vL~~is~~I~--------~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~ 1360 (1522)
T TIGR00957 1289 NYCLRYREDLDLVLRHINVTIH--------GGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 (1522)
T ss_pred EEEEEeCCCCcccccceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHh
Confidence 47777854 579999999999 99999999999999999999999954 456
Q ss_pred hcCCcccCCC----CCch------------HHHHHHhhcCCc-----------cccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHF----STIR------------VVDRIFTRMGTV-----------DNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~----~~i~------------~~~~~~~~~~~~-----------~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
++| +||++. |++. .....+...++. ..+..+-+.+|+|++|+..+++++ .+
T Consensus 1361 ~i~-iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1361 KIT-IIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred cCe-EECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 777 888775 2221 111223333332 223334456999999998888876 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+++++|||++++.|......+...+ +.. ..++|+++++|..+... .+++| +++++|+++
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l-~~~-~~~~TvI~IAHRl~ti~---~~DrI------lVld~G~Iv 1498 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTI-RTQ-FEDCTVLTIAHRLNTIM---DYTRV------IVLDKGEVA 1498 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHH-HHH-cCCCEEEEEecCHHHHH---hCCEE------EEEECCEEE
Confidence 9999999998877774433322222 211 24799999999954333 24555 445566554
No 391
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.49 E-value=2.7e-13 Score=136.32 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=104.9
Q ss_pred cccccCCCCEEEEcCccC-cccc-cccceeecccccc-cCCceEEEEecCCCChhHHHHHHHHHH---------------
Q 006859 345 RPHFTENGPLAIDGGRHP-ILES-IHNDFIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIV--------------- 406 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~-~l~~-~~~~~~~~~~~l~-~~g~~~~i~GpNGsGKSTllk~i~g~~--------------- 406 (628)
.|.+.+...+.+.|.-+. .+.. .+.-..-++++++ ..|+.+||+|.+|||||||=+.|.++.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~ 352 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG 352 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc
Confidence 444444455666663221 2221 1111222444444 499999999999999999999998854
Q ss_pred --------HHHhcCCcccCCC-CCch---------------------------HHHHHHhhcCCcc-ccccCcCchHHHH
Q 006859 407 --------ILAQIGCYVPAHF-STIR---------------------------VVDRIFTRMGTVD-NLESNSSTFMTEM 449 (628)
Q Consensus 407 --------~~~~~g~~v~~~~-~~i~---------------------------~~~~~~~~~~~~~-~~~~~~s~~s~~~ 449 (628)
+..++- .|+++. +.+. .+-..+...|++. ...+.+..||+|+
T Consensus 353 ~~~~~mrplR~~mQ-vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 353 LSRKEMRPLRRRMQ-VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred cChhhhhhhhhhce-EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 222222 222221 1110 2223455667653 4566788999999
Q ss_pred HHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHH---HHHHH-hCCcEEEEEcCChhHHHHhhhCcceeEEEEE
Q 006859 450 KETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSC---CEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFY 522 (628)
Q Consensus 450 ~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~---~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~ 522 (628)
+|+..|++++ .+|++++|||| |+.+|..- ...+ +..|. +.+..-+|+||| |.-....+..|..++-+
T Consensus 432 RQRIAIARAliLkP~~i~LDEP---TSALD~SV-QaQvv~LLr~LQ~k~~LsYLFISHD--L~VvrAl~~~viVm~~G 503 (534)
T COG4172 432 RQRIAIARALILKPELILLDEP---TSALDRSV-QAQVLDLLRDLQQKHGLSYLFISHD--LAVVRALCHRVIVMRDG 503 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCC---chHhhHHH-HHHHHHHHHHHHHHhCCeEEEEecc--HHHHHHhhceEEEEeCC
Confidence 9998888876 89999999999 55555432 2233 34444 468999999999 55555556666444444
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.49 E-value=3e-13 Score=140.87 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=102.4
Q ss_pred CcccccccCC--CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--HHHhcCCcc--
Q 006859 342 RYTRPHFTEN--GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--ILAQIGCYV-- 415 (628)
Q Consensus 342 ~~~~p~~~~~--~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--~~~~~g~~v-- 415 (628)
.++-|.-.+. .++++.|.+.+++.+..+++. .|+.+||+|||||||||+|++|+|-- +-.++++|.
T Consensus 67 l~s~~~s~dvk~~sls~s~~g~~l~kd~~~El~--------~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls 138 (614)
T KOG0927|consen 67 LFSHPISRDVKIESLSLSFHGVELIKDVTLELN--------RGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS 138 (614)
T ss_pred cccCcccccceeeeeeeccCCceeeeeeeEEec--------CCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc
Confidence 3444443332 358889999999999999999 99999999999999999999999921 000111000
Q ss_pred ----------------cCCCCCch-------------------------------------HHHHHHhhcCC-ccccccC
Q 006859 416 ----------------PAHFSTIR-------------------------------------VVDRIFTRMGT-VDNLESN 441 (628)
Q Consensus 416 ----------------~~~~~~i~-------------------------------------~~~~~~~~~~~-~~~~~~~ 441 (628)
+++..... ..-+++..+|. .....+.
T Consensus 139 ~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~ 218 (614)
T KOG0927|consen 139 REIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKK 218 (614)
T ss_pred ccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHH
Confidence 00000000 00112222232 2445566
Q ss_pred cCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCc-EEEEEcCChhHH
Q 006859 442 SSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKA-YTIFASHMENLS 507 (628)
Q Consensus 442 ~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~-~vi~~tH~~~l~ 507 (628)
...||+|.+.++.+++.+ ..|+|++|||| |+++|..++.| +.++|.+... ++++++|+.+..
T Consensus 219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEP---tnhLDleA~~w-Lee~L~k~d~~~lVi~sh~QDfl 282 (614)
T KOG0927|consen 219 VKDLSGGWRMRAALARALFQKPDLLLLDEP---TNHLDLEAIVW-LEEYLAKYDRIILVIVSHSQDFL 282 (614)
T ss_pred hhccCchHHHHHHHHHHHhcCCCEEEecCC---ccCCCHHHHHH-HHHHHHhccCceEEEEecchhhh
Confidence 677999998888877776 88999999999 55555566555 7788888766 899999996643
No 393
>PLN03140 ABC transporter G family member; Provisional
Probab=99.49 E-value=7.8e-14 Score=168.72 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=100.4
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH---------------------HHhcCCcccCC
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI---------------------LAQIGCYVPAH 418 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~---------------------~~~~g~~v~~~ 418 (628)
++++|++++..+. +|++++|+||||||||||||+|+|..- ...+| |++++
T Consensus 177 ~~~IL~~vs~~i~--------~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~-yv~Q~ 247 (1470)
T PLN03140 177 KLTILKDASGIIK--------PSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSA-YISQN 247 (1470)
T ss_pred cceeccCCeEEEe--------CCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeE-Eeccc
Confidence 3678999999999 999999999999999999999999530 11233 44443
Q ss_pred CCCc---h-------------------------------------------------------HHHHHHhhcCCcccc--
Q 006859 419 FSTI---R-------------------------------------------------------VVDRIFTRMGTVDNL-- 438 (628)
Q Consensus 419 ~~~i---~-------------------------------------------------------~~~~~~~~~~~~~~~-- 438 (628)
...+ . ..+.++..+|+.+..
T Consensus 248 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t 327 (1470)
T PLN03140 248 DVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDT 327 (1470)
T ss_pred ccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCc
Confidence 2110 0 123355566765433
Q ss_pred ---ccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCCh--hHHHHhh
Q 006859 439 ---ESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHME--NLSELAT 511 (628)
Q Consensus 439 ---~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~--~l~~~~~ 511 (628)
+.....+|+|++|+..++..+ .+|+++++|||++|+|+.....+.. .+..+.+ .|.|+++++|++ ++.++++
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~Tviis~Hqp~~~i~~lfD 406 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEATVLMSLLQPAPETFDLFD 406 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHHhh
Confidence 334567999999887777665 8899999999999999877666554 4444544 589999999985 4444444
No 394
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.48 E-value=2.8e-13 Score=132.16 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=82.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHH------------HHh---------cCCcccCCCCC---------ch--HHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVI------------LAQ---------IGCYVPAHFST---------IR--VVDRI 428 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~------------~~~---------~g~~v~~~~~~---------i~--~~~~~ 428 (628)
+|++++|+|||||||||++++|++..+ ... ++ ++++..+. +. .+.+.
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~-~~f~~~~~~~~~~r~~gl~~~~~~~~ 105 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS-FTFQLGGKKYRVERSRGLDYDQFTRI 105 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE-EEEEECCeEEEEEEecCCCHHHHHHh
Confidence 478999999999999999999995221 000 11 11111111 00 01111
Q ss_pred --HhhcCCccccccCcCchHHHHHHHHHHHHhC-----------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCc
Q 006859 429 --FTRMGTVDNLESNSSTFMTEMKETAFVMQNV-----------SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKA 495 (628)
Q Consensus 429 --~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-----------~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~ 495 (628)
+...+..+.+.....++|+|++++..+++++ .+|+++++|||+.|+|+.....+ ...+..+.+.+.
T Consensus 106 ~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~-~~~l~~~~~~~~ 184 (213)
T cd03279 106 VLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAV-ATALELIRTENR 184 (213)
T ss_pred hhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHhCCC
Confidence 1222345566777888999999887777665 25789999999999998665554 334555666688
Q ss_pred EEEEEcCChhHHH
Q 006859 496 YTIFASHMENLSE 508 (628)
Q Consensus 496 ~vi~~tH~~~l~~ 508 (628)
+++++||++++..
T Consensus 185 tii~itH~~~~~~ 197 (213)
T cd03279 185 MVGVISHVEELKE 197 (213)
T ss_pred EEEEEECchHHHH
Confidence 9999999976554
No 395
>PTZ00243 ABC transporter; Provisional
Probab=99.48 E-value=1.8e-13 Score=167.54 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=108.4
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|.. .++|+++++++. +|+.+||+|++|||||||+++|.|+. +..
T Consensus 1313 nVsf~Y~~~~~~vL~~vsf~I~--------~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1313 GVQMRYREGLPLVLRGVSFRIA--------PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred EEEEEeCCCCCceeecceEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence 45667743 458898888888 99999999999999999999999954 456
Q ss_pred hcCCcccCCC----CCch------------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHF----STIR------------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~----~~i~------------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
++| +||++. |++. .+...+...++.+. +..+-+.+|+|++|+..+++++ .+
T Consensus 1385 ~I~-iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1385 QFS-MIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred cce-EECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 777 888874 3322 11233344444332 2233456999999999999887 43
Q ss_pred -CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 462 -RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 462 -~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
++++||||+++..|+.....+...+.+ . -.++|+|+++|.++... .++.| +++++|++.
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~-~-~~~~TvI~IAHRl~ti~---~~DrI------lVLd~G~Vv 1523 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMS-A-FSAYTVITIAHRLHTVA---QYDKI------IVMDHGAVA 1523 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHH-H-CCCCEEEEEeccHHHHH---hCCEE------EEEECCEEE
Confidence 799999999887776543333332222 1 24799999999954433 35555 444555554
No 396
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.47 E-value=1.8e-13 Score=132.96 Aligned_cols=127 Identities=18% Similarity=0.138 Sum_probs=81.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHH------HH-HhcCCcccCCCC--------Cch-HH---------------------
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCLIV------IL-AQIGCYVPAHFS--------TIR-VV--------------------- 425 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g~~------~~-~~~g~~v~~~~~--------~i~-~~--------------------- 425 (628)
++++|+|||||||||++++|..+. .. .++| ++|.... .+. .+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 104 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLS-DLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRF 104 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHH-HHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCce
Confidence 688999999999999999998431 11 2344 3332211 000 00
Q ss_pred ----HHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcE
Q 006859 426 ----DRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAY 496 (628)
Q Consensus 426 ----~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~ 496 (628)
+.+...+++.+......+.+|+|+++...+++++ .+|+++++|||+.|.|+..... .+..+..+. .+.+
T Consensus 105 ~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~-l~~~l~~~~-~~~~ 182 (212)
T cd03274 105 LILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSI-VANYIKERT-KNAQ 182 (212)
T ss_pred EEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHH-HHHHHHHHc-CCCE
Confidence 1111233444445556778999999888887754 2479999999999999866554 334444443 4678
Q ss_pred EEEEcCChhHHHHhhh
Q 006859 497 TIFASHMENLSELATI 512 (628)
Q Consensus 497 vi~~tH~~~l~~~~~~ 512 (628)
++++||+.++..++++
T Consensus 183 ~iivs~~~~~~~~~d~ 198 (212)
T cd03274 183 FIVISLRNNMFELADR 198 (212)
T ss_pred EEEEECcHHHHHhCCE
Confidence 9999999766665543
No 397
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=2e-13 Score=152.23 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=103.9
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCcccCCC
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCYVPAHF 419 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~v~~~~ 419 (628)
...+|++++..+. +|++.||+||+||||||||++++|-. .+..+-.||+++.
T Consensus 42 ~k~iL~~vsg~~~--------~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD 113 (613)
T KOG0061|consen 42 TKTILKGVSGTAK--------PGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDD 113 (613)
T ss_pred cceeeeCcEEEEe--------cCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccc
Confidence 4678888888888 99999999999999999999999932 1122222665544
Q ss_pred CCc---------------------------hHHHHHHhhcCCccccccCcC-----chHHHHHHH-HHHHHhCCCCcEEE
Q 006859 420 STI---------------------------RVVDRIFTRMGTVDNLESNSS-----TFMTEMKET-AFVMQNVSERSLIV 466 (628)
Q Consensus 420 ~~i---------------------------~~~~~~~~~~~~~~~~~~~~s-----~~s~~~~~~-~~i~~~~~~~~l~l 466 (628)
--+ ..++.++..+|+.+-.+..++ ..|+|++++ ......+++|++++
T Consensus 114 ~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLf 193 (613)
T KOG0061|consen 114 VLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILF 193 (613)
T ss_pred cccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEE
Confidence 211 156778888888755555443 377777654 55556679999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh--HHHHhhh
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN--LSELATI 512 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~--l~~~~~~ 512 (628)
+||||.|+|......+.. +++.+++.|+||+.+-|.+. +-++.++
T Consensus 194 lDEPTSGLDS~sA~~vv~-~Lk~lA~~grtVi~tIHQPss~lf~lFD~ 240 (613)
T KOG0061|consen 194 LDEPTSGLDSFSALQVVQ-LLKRLARSGRTVICTIHQPSSELFELFDK 240 (613)
T ss_pred ecCCCCCcchhhHHHHHH-HHHHHHhCCCEEEEEEeCCcHHHHHHHhH
Confidence 999999999877666444 55666666999999999974 3444443
No 398
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.3e-12 Score=133.93 Aligned_cols=157 Identities=22% Similarity=0.281 Sum_probs=106.3
Q ss_pred CEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.| .++|++.|+++++. +|+.++++||+|+||||++|.+-... +..+
T Consensus 542 nvtF~Y~p~k~vl~disF~v~--------pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~ 613 (790)
T KOG0056|consen 542 NVTFAYDPGKPVLSDISFTVQ--------PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSS 613 (790)
T ss_pred EeEEecCCCCceeecceEEec--------CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHh
Confidence 355556 47899999999999 99999999999999999999998742 6778
Q ss_pred cCCcccCCCCCch---------------------------HHHHHHhhcCCcccccc----CcCchHHHHHHHHHHHHhC
Q 006859 411 IGCYVPAHFSTIR---------------------------VVDRIFTRMGTVDNLES----NSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 411 ~g~~v~~~~~~i~---------------------------~~~~~~~~~~~~~~~~~----~~s~~s~~~~~~~~i~~~~ 459 (628)
|| .||++.-.+. +.|+++ +..+-... .--.+|||++|+..|++..
T Consensus 614 IG-VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl---~fPegY~t~VGERGLkLSGGEKQRVAiARti 689 (790)
T KOG0056|consen 614 IG-VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRIL---QFPEGYNTRVGERGLKLSGGEKQRVAIARTI 689 (790)
T ss_pred cC-cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHh---cCchhhhhhhhhcccccCCcchhhHHHHHHH
Confidence 99 9998762211 112222 11111111 1123789999998888876
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
..|++++|||.++.+|.....++.. .+..+. .+.|.+++.|.+ .. |.+.....++++|.++-
T Consensus 690 LK~P~iIlLDEATSALDT~tER~IQa-aL~rlc-a~RTtIVvAHRL--ST-------ivnAD~ILvi~~G~IvE 752 (790)
T KOG0056|consen 690 LKAPSIILLDEATSALDTNTERAIQA-ALARLC-ANRTTIVVAHRL--ST-------IVNADLILVISNGRIVE 752 (790)
T ss_pred hcCCcEEEEcchhhhcCCccHHHHHH-HHHHHh-cCCceEEEeeee--hh-------eecccEEEEEeCCeEee
Confidence 8899999999988877765555433 333333 367788888883 22 33333445566666653
No 399
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.46 E-value=3.3e-13 Score=134.75 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=53.2
Q ss_pred ccCcCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 439 ESNSSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 439 ~~~~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
......+|+|+++...+++.+ .+|+++++|||++|+|+.....+.. .+..+.+ +.+++++||..++..++++
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~~~-~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKELSD-GAQFITTTFRPELLEVADK 229 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHhhCCE
Confidence 356788999999988887766 3589999999999999866555433 3444433 7889999999776655543
No 400
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.42 E-value=4.8e-12 Score=127.01 Aligned_cols=135 Identities=20% Similarity=0.163 Sum_probs=90.1
Q ss_pred cceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch----------------HHHHHHh--
Q 006859 369 NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR----------------VVDRIFT-- 430 (628)
Q Consensus 369 ~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~----------------~~~~~~~-- 430 (628)
+++.|-|+++ .+|+++-|+|.||||||||++.+.| ...|++|.|. .+..+|+
T Consensus 337 FhvgPiNl~i-krGelvFliG~NGsGKST~~~LLtG---------L~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDy 406 (546)
T COG4615 337 FHVGPINLTI-KRGELVFLIGGNGSGKSTLAMLLTG---------LYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDY 406 (546)
T ss_pred ceecceeeEE-ecCcEEEEECCCCCcHHHHHHHHhc---------ccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhH
Confidence 3344434333 3799999999999999999999999 5555555543 1222222
Q ss_pred -----------------------hcCCccccccC---c--CchHHHHH-HHHHHHHhCCCCcEEEEeCCCCCCChHHHHH
Q 006859 431 -----------------------RMGTVDNLESN---S--STFMTEMK-ETAFVMQNVSERSLIVMDELGRATSSSDGFA 481 (628)
Q Consensus 431 -----------------------~~~~~~~~~~~---~--s~~s~~~~-~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~ 481 (628)
++.+.....-. . -.+|.|++ +++.+.+.+-+++++++||-.+.-||.-...
T Consensus 407 hLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~ 486 (546)
T COG4615 407 HLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486 (546)
T ss_pred hhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHH
Confidence 22211111111 1 12456666 5666667778999999999998888876666
Q ss_pred HHHHHHHHHHhCCcEEEEEcCChhHHHHhhhC
Q 006859 482 IAWSCCEHLLSLKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 482 ~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~ 513 (628)
.-...+-.+++.|+|++.+|||-..-..+++.
T Consensus 487 FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 487 FYQVLLPLLKEQGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred HHHHHhHHHHHhCCeEEEEecCchhhhhHHHH
Confidence 55667777888999999999996555555544
No 401
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=7.6e-15 Score=167.41 Aligned_cols=230 Identities=13% Similarity=0.139 Sum_probs=149.4
Q ss_pred CCcccccccCC---CCEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCc
Q 006859 341 DRYTRPHFTEN---GPLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCY 414 (628)
Q Consensus 341 ~~~~~p~~~~~---~~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~ 414 (628)
.++..|.+..+ .++.+.|.. +++++++++++. +|+.++|+||+||||||.+-+|-. |
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~--------~GqTvALVG~SGsGKSTvI~LLeR---------f 1039 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIR--------AGQTVALVGPSGSGKSTVISLLER---------F 1039 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEec--------CCCEEEEECCCCCCHHHHHHHHHH---------h
Confidence 34556665432 357788864 458888888888 999999999999999999999999 9
Q ss_pred ccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCC
Q 006859 415 VPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK 494 (628)
Q Consensus 415 v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~ 494 (628)
..|..|.+.+.+..+..+.+. .-.++++.+-|...--.-.|.|+++-|....+.. .+.+.+...+
T Consensus 1040 Ydp~~G~V~IDg~dik~lnl~-----------~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~----eIi~Aak~AN 1104 (1228)
T KOG0055|consen 1040 YDPDAGKVKIDGVDIKDLNLK-----------WLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEE----EIIEAAKLAN 1104 (1228)
T ss_pred cCCCCCeEEECCcccccCCHH-----------HHHHhcceeccCchhhcccHHHHHhccCCCCCHH----HHHHHHHHhh
Confidence 999999998877777766632 1222333333322111223444454442111111 2222222111
Q ss_pred cEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--H
Q 006859 495 AYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--I 567 (628)
Q Consensus 495 ~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~ 567 (628)
-|.. +..+-+-++- .+.+. --+||+|+.||.++|+++.+ ++||.++.||-..+ +
T Consensus 1105 ------aH~F-I~sLP~GyDT-------~vGer-----G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvV 1165 (1228)
T KOG0055|consen 1105 ------AHNF-ISSLPQGYDT-------RVGER-----GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVV 1165 (1228)
T ss_pred ------hHHH-HhcCcCcccC-------ccCcc-----cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHH
Confidence 0110 1122222210 00111 17899999999999999998 89999999998877 2
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 006859 568 TSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFI 624 (628)
Q Consensus 568 ~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~l~~~~~~~~ 624 (628)
-+.|.+- ....|.+++.|.+..+ +-||.|.|+++|++.+.|..++|-+.+-.|.
T Consensus 1166 QeALd~a--~~gRT~IvIAHRLSTI-qnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~ 1219 (1228)
T KOG0055|consen 1166 QEALDRA--MEGRTTIVIAHRLSTI-QNADVIAVLKNGKVVEQGTHDELLAKRGIYF 1219 (1228)
T ss_pred HHHHHHh--hcCCcEEEEecchhhh-hcCCEEEEEECCEEEecccHHHHHhCCCchH
Confidence 2333321 1223788999999987 6699999999999999999999887766664
No 402
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.39 E-value=1.7e-12 Score=130.04 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=54.8
Q ss_pred cccCcCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 438 LESNSSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 438 ~~~~~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
.......+|+|++++..+++.+ .+|+++++|||++|+|+.....+.. ++..+. .|.+++++||+.++.+.+++
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~-~g~~ii~iSH~~~~~~~~d~ 237 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHF-KGSQFIVVSLKEGMFNNANV 237 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHc-CCCEEEEEECCHHHHHhCCE
Confidence 3466788999999988887754 4679999999999998866555433 333333 47899999999777776554
Q ss_pred C
Q 006859 513 Y 513 (628)
Q Consensus 513 ~ 513 (628)
.
T Consensus 238 v 238 (251)
T cd03273 238 L 238 (251)
T ss_pred E
Confidence 3
No 403
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.2e-12 Score=132.36 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=86.8
Q ss_pred CEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch--------
Q 006859 353 PLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR-------- 423 (628)
Q Consensus 353 ~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~-------- 423 (628)
.+++.| |..|++..+++-+. -...++|+||||.||||||+++.| -+.|..|...
T Consensus 591 ~VtFgy~gqkpLFkkldFGiD--------mdSRiaIVGPNGVGKSTlLkLL~G---------kl~P~~GE~RKnhrL~iG 653 (807)
T KOG0066|consen 591 DVTFGYPGQKPLFKKLDFGID--------MDSRIAIVGPNGVGKSTLLKLLIG---------KLDPNDGELRKNHRLRIG 653 (807)
T ss_pred cccccCCCCCchhhccccccc--------ccceeEEECCCCccHHHHHHHHhc---------CCCCCcchhhccceeeee
Confidence 466666 56777777666555 456799999999999999999999 4433333221
Q ss_pred HHH-----------------------------HHHhhcCCcccc-ccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 424 VVD-----------------------------RIFTRMGTVDNL-ESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 424 ~~~-----------------------------~~~~~~~~~~~~-~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
+|+ +.+-.+|+.... .-.+..+|+|++.+..++..+ ..|+++|||||+.
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 111 122233332111 112445788988766666554 7899999999955
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
.++ -.+ ..++.+.+.+....||++||+..|
T Consensus 734 NLD---IES-IDALaEAIney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 734 NLD---IES-IDALAEAINEYNGGVIMVSHDERL 763 (807)
T ss_pred Ccc---hhh-HHHHHHHHHhccCcEEEEecccce
Confidence 544 444 334566666778899999999544
No 404
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.39 E-value=1.3e-14 Score=133.25 Aligned_cols=219 Identities=16% Similarity=0.218 Sum_probs=139.6
Q ss_pred EcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCcc
Q 006859 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVD 436 (628)
Q Consensus 357 ~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~ 436 (628)
..|+..+++.++++.. .|++-|++|.+|||||-..|.|+| ... +.-.+. .|+ -+++.-|
T Consensus 16 sqG~vK~VD~v~ltln--------EGEi~GLVGESGSGKSLiAK~Ic~---------v~k-dnW~vT-ADR--~Rf~~id 74 (330)
T COG4170 16 SQGWVKAVDRVSMTLN--------EGEIRGLVGESGSGKSLIAKAICG---------VNK-DNWRVT-ADR--MRFDDID 74 (330)
T ss_pred CCCceEeeeeeeeeec--------cceeeeeeccCCCchhHHHHHHhc---------ccc-cceEEE-hhh--cccccch
Confidence 3467778888888888 999999999999999999999999 332 111111 010 0111111
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHH-------------HhCCcEEEEEcCC
Q 006859 437 NLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHL-------------LSLKAYTIFASHM 503 (628)
Q Consensus 437 ~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l-------------~~~~~~vi~~tH~ 503 (628)
.+. ++...+ +..+.+.. -.++.||..-+||.... ...+++.+ --++...|...|.
T Consensus 75 LL~-----L~Pr~R-Rk~ig~~i----sMIFQeP~sCLDPS~~i--G~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHr 142 (330)
T COG4170 75 LLR-----LSPRER-RKLVGHNV----SMIFQEPQSCLDPSERV--GRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHR 142 (330)
T ss_pred hhc-----CChHHh-hhhhccch----hhhhcCchhhcChHHHH--HHHHHhhCccccccchHhhhhchhHHHHHHHHHH
Confidence 111 111111 11121111 12445554444543322 12222111 1112334444555
Q ss_pred hhHH---HHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHH
Q 006859 504 ENLS---ELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITK 573 (628)
Q Consensus 504 ~~l~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~ 573 (628)
.++. ++...|| |.|.+|++|.+++|+++|. ++|+|++.++...+ +++.|.+
T Consensus 143 VGIKdHkDIM~SYP-------------------~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~ 203 (330)
T COG4170 143 VGIKDHKDIMRSYP-------------------YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSR 203 (330)
T ss_pred hccccHHHHHHhCc-------------------chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHH
Confidence 5443 4555677 9999999999999999998 88999999987655 5555554
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHH-HHHHHHHHhccC
Q 006859 574 KEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 574 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
-.+..+.+++.++||+..+.+.||++-||.-|+-.+.+..+. +..+.++||+-+
T Consensus 204 mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 204 LNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred hhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCchHHHH
Confidence 333334478899999999999999999999999888777665 667999999754
No 405
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.38 E-value=3.1e-12 Score=122.95 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=77.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHHH--------------HHhcCC------cccCCCC----Cc-----hHHHHHHhhcC
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCLIVI--------------LAQIGC------YVPAHFS----TI-----RVVDRIFTRMG 433 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g~~~--------------~~~~g~------~v~~~~~----~i-----~~~~~~~~~~~ 433 (628)
.+.+|+||||+||||++..|..... +-+.|. ..+...+ .. ..+..++..
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 99 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS-- 99 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc--
Confidence 4789999999999999999875320 000010 0000000 01 112223332
Q ss_pred CccccccCcCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh--CCcEEEEEcCChh
Q 006859 434 TVDNLESNSSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS--LKAYTIFASHMEN 505 (628)
Q Consensus 434 ~~~~~~~~~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~--~~~~vi~~tH~~~ 505 (628)
.+...+...++|+|+++...++..+ .+|+++++|||++|+|......+...+.+...+ .+.+++++||+++
T Consensus 100 -~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 100 -NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred -ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 4556778889999999887777654 789999999999999987666554444443333 2368999999954
No 406
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.37 E-value=3.9e-12 Score=122.97 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=76.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCc----------------------------------hHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTI----------------------------------RVVD 426 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i----------------------------------~~~~ 426 (628)
+| +++|+||||||||||+++|.... .| ..++..+.+ .+++
T Consensus 22 ~g-~~~i~G~NGsGKTTLl~ai~~~l----~G-~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 22 SP-LTLIVGQNGAGKTTIIEALKYAL----TG-ELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHH----cC-CCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 34 99999999999999999997422 11 222222211 1111
Q ss_pred HHHh--hcCCccccccCcCchHHHHHHH------HHHHHh-CCCCcEEEEeCCCCCCChHHHH-HHHHHHHHHHHhC-Cc
Q 006859 427 RIFT--RMGTVDNLESNSSTFMTEMKET------AFVMQN-VSERSLIVMDELGRATSSSDGF-AIAWSCCEHLLSL-KA 495 (628)
Q Consensus 427 ~~~~--~~~~~~~~~~~~s~~s~~~~~~------~~i~~~-~~~~~l~llDE~~~gt~~~~~~-~~~~~~~~~l~~~-~~ 495 (628)
.+.. .-.....+.+..+.+|+|++++ ..+++. +.+|+++++|||+.++|+.... .+ ..++..+.+. +.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l-~~~l~~~~~~~~~ 174 (204)
T cd03240 96 NVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL-AEIIEERKSQKNF 174 (204)
T ss_pred ceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH-HHHHHHHHhccCC
Confidence 1100 0001123355677899999885 233333 4789999999999999886555 43 3344445544 78
Q ss_pred EEEEEcCChhHHHHh
Q 006859 496 YTIFASHMENLSELA 510 (628)
Q Consensus 496 ~vi~~tH~~~l~~~~ 510 (628)
+++++||++++...+
T Consensus 175 ~iiiitH~~~~~~~~ 189 (204)
T cd03240 175 QLIVITHDEELVDAA 189 (204)
T ss_pred EEEEEEecHHHHhhC
Confidence 999999997765443
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.37 E-value=2.6e-11 Score=131.07 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=96.3
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHh------cC---CcccCCC----CC-----
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ------IG---CYVPAHF----ST----- 421 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~------~g---~~v~~~~----~~----- 421 (628)
+++.++++++.+. +|+.+.|+||||||||||+|+|+|+--.+. -+ .|+|+.+ |+
T Consensus 405 ~~~ll~~l~~~v~--------~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l 476 (604)
T COG4178 405 GQTLLSELNFEVR--------PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREAL 476 (604)
T ss_pred CCeeeccceeeeC--------CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHH
Confidence 4577777777777 999999999999999999999999641111 00 1233221 11
Q ss_pred --------c--hHHHHHHhhcCCccccc------cCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHH
Q 006859 422 --------I--RVVDRIFTRMGTVDNLE------SNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAW 484 (628)
Q Consensus 422 --------i--~~~~~~~~~~~~~~~~~------~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~ 484 (628)
+ ...-+++...|+.+... ..-..+|+|++|+...++.+ ++|+.++|||.+++.|+.. ..
T Consensus 477 ~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~----e~ 552 (604)
T COG4178 477 CYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET----ED 552 (604)
T ss_pred hCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH----HH
Confidence 1 12334555666554332 23345788888877777765 9999999999966666532 23
Q ss_pred HHHHHHHh--CCcEEEEEcCChhHHHHhhhC
Q 006859 485 SCCEHLLS--LKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 485 ~~~~~l~~--~~~~vi~~tH~~~l~~~~~~~ 513 (628)
.+.+.+.+ .++++|-+.|...+..+.++.
T Consensus 553 ~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~ 583 (604)
T COG4178 553 RLYQLLKEELPDATVISVGHRPTLWNFHSRQ 583 (604)
T ss_pred HHHHHHHhhCCCCEEEEeccchhhHHHHhhh
Confidence 35555555 689999999999888877654
No 408
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.37 E-value=4.1e-12 Score=126.86 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=51.8
Q ss_pred cCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 442 SSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 442 ~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
...+|+|+++...+++.+ .+|+++++|||++|+|+.....+.. ++..+.+.|.+++++||+.++...++
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcEEEEEECCHHHHhhCC
Confidence 367899999888777765 2489999999999999866555443 44445555899999999977665544
No 409
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=99.36 E-value=1.1e-11 Score=103.76 Aligned_cols=91 Identities=32% Similarity=0.529 Sum_probs=84.4
Q ss_pred CCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceecccceEEEEecccccCCCCcceEEEeeccceEEEecHHH
Q 006859 199 GIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLEL 278 (628)
Q Consensus 199 g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l 278 (628)
|+|++||.+|+.+.++.++++++..++++.++++++++.|+++.||+++||.+.. ..+|+.|+.++.+++.++|+|+++
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~-~~~p~~~~~~~~~k~~~rf~t~~l 79 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDE-KKLPKDFIIVSSTKSGVRFTTPEL 79 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCG-GGSTTTEEEEEEESSEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEcccc-ccCCCceEEEEEEcCcEEEECHHH
Confidence 7899999999999999999999999999999999999999999999999999874 468999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006859 279 ASLNVRNKSAAG 290 (628)
Q Consensus 279 ~~l~~~~~~~~~ 290 (628)
..|+.++.++..
T Consensus 80 ~~L~~~~~~~~e 91 (92)
T PF05190_consen 80 KELNEELKEAEE 91 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 410
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=7.5e-12 Score=127.83 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=92.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCC--------------------c---------------hHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFST--------------------I---------------RVV 425 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~--------------------i---------------~~~ 425 (628)
.|++++++||||-|||||.|+++| .+.|++|. + .+.
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG---------~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~ 436 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAG---------VIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFK 436 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhc---------cccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhH
Confidence 799999999999999999999999 44433331 1 123
Q ss_pred HHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 426 DRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 426 ~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
..++..+.+.+.+++.+..+|+|..|+..|+..+ ...++.+||||.+-+|.......+..+-+...+.+++++++-||.
T Consensus 437 ~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 437 TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 4455667778888899999999988777776665 678999999998777776666555544444446789999999997
Q ss_pred hHHHHhh
Q 006859 505 NLSELAT 511 (628)
Q Consensus 505 ~l~~~~~ 511 (628)
-+.++..
T Consensus 517 ~~~dyvs 523 (591)
T COG1245 517 YMIDYVS 523 (591)
T ss_pred ehhhhhh
Confidence 7777654
No 411
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.31 E-value=8.1e-12 Score=126.05 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=99.6
Q ss_pred eeecccccc-cCCceEEEEecCCCChhHHHHHHHHHHHH-------HhcC----------CcccC----CCCC-------
Q 006859 371 FIPNNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVIL-------AQIG----------CYVPA----HFST------- 421 (628)
Q Consensus 371 ~~~~~~~l~-~~g~~~~i~GpNGsGKSTllk~i~g~~~~-------~~~g----------~~v~~----~~~~------- 421 (628)
+...|++|. ++|++++|+|++||||||+|++|.|...- ...| ..+|. +.+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl 476 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHL 476 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHH
Confidence 344555555 58999999999999999999999994410 0001 01111 1111
Q ss_pred ------chHHHHHHhhcCCcccc--ccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 006859 422 ------IRVVDRIFTRMGTVDNL--ESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492 (628)
Q Consensus 422 ------i~~~~~~~~~~~~~~~~--~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~ 492 (628)
+...-.++.+.|+.|.. .+..+.+|.|+++.+.++..+ ..|.+++.||+++.+|+.....++..+-+...+
T Consensus 477 ~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe 556 (593)
T COG2401 477 RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556 (593)
T ss_pred hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 12233456666666543 346778899999988888777 668999999999999988877777766665567
Q ss_pred CCcEEEEEcCChhHHHHh
Q 006859 493 LKAYTIFASHMENLSELA 510 (628)
Q Consensus 493 ~~~~vi~~tH~~~l~~~~ 510 (628)
.|.|++++||..++.+..
T Consensus 557 ~giTlivvThrpEv~~AL 574 (593)
T COG2401 557 AGITLIVVTHRPEVGNAL 574 (593)
T ss_pred hCCeEEEEecCHHHHhcc
Confidence 899999999998887644
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.31 E-value=4.4e-11 Score=137.73 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=61.7
Q ss_pred HhhcCCcc-ccccCcCchHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 429 FTRMGTVD-NLESNSSTFMTEMKETAFVMQNVS----ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 429 ~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~~----~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
+..+|+.. .+.+...++|+|++|+..+++.+. +|++++||||+.|+++.+...+.. ++..+.+.|.++++++|+
T Consensus 812 L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 812 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred HHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEeCC
Confidence 44566654 467788999999999888877763 489999999999999987776544 455566679999999999
Q ss_pred hhHHH
Q 006859 504 ENLSE 508 (628)
Q Consensus 504 ~~l~~ 508 (628)
+++..
T Consensus 891 ~~~i~ 895 (924)
T TIGR00630 891 LDVIK 895 (924)
T ss_pred HHHHH
Confidence 76554
No 413
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.28 E-value=1.6e-11 Score=112.81 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=90.9
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--------HHhc----------C-
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI--------LAQI----------G- 412 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~--------~~~~----------g- 412 (628)
.+.++|. ..|++.++++.++ .|....++|.||||||||||+++|-.+ +... |
T Consensus 18 gl~f~y~~~dP~~~Dfnldlp--------~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 18 GLQFKYKVSDPIFFDFNLDLP--------AGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred ccEEecccCCceEEEEeeccC--------CCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 3667764 5688888888888 999999999999999999999999221 0000 0
Q ss_pred -Ccc-------cC------CCCCchHHHHHHhhcCCcc-------------ccccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 413 -CYV-------PA------HFSTIRVVDRIFTRMGTVD-------------NLESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 413 -~~v-------~~------~~~~i~~~~~~~~~~~~~~-------------~~~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
+|+ +. -++.+....-++. ++..+ ++.=.....|.|++++..++.-+ .+-.+
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifg-V~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkV 168 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFG-VGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKV 168 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhh-ccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeE
Confidence 000 01 1122222222221 11111 11112234677888877777655 66799
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++|||.+-.++......+...+.+.-.++|+|++.+||. +.-++....++
T Consensus 169 LLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI--FDGLe~Wpthl 218 (291)
T KOG2355|consen 169 LLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI--FDGLETWPTHL 218 (291)
T ss_pred EEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee--ccchhhcchhE
Confidence 999999555444433333333333333579999999998 44555544444
No 414
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.27 E-value=3.6e-12 Score=145.78 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=99.8
Q ss_pred cCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCcccC
Q 006859 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCYVPA 417 (628)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~v~~ 417 (628)
.++..+|++++--+. +|-.++|+|+|||||||||+.|+|=. .-..+| ||.+
T Consensus 801 G~~~qLL~~V~G~~k--------PG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G-YvqQ 871 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFK--------PGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG-YVEQ 871 (1391)
T ss_pred ccceEhhhcCceEec--------CCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc-eeec
Confidence 366778888888888 89999999999999999999999921 112234 5544
Q ss_pred CCCC---------------------------chHHHHHHhhcCCccccccCcC----chHHHHHHHHHHH-HhCCCC-cE
Q 006859 418 HFST---------------------------IRVVDRIFTRMGTVDNLESNSS----TFMTEMKETAFVM-QNVSER-SL 464 (628)
Q Consensus 418 ~~~~---------------------------i~~~~~~~~~~~~~~~~~~~~s----~~s~~~~~~~~i~-~~~~~~-~l 464 (628)
..-. ...+++++.-+++.+..+.-++ -++.|+|++..|. ....+| ++
T Consensus 872 ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 872 QDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred ccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 3211 1256777777777755554333 4888988766654 444777 99
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
++||||++|+|......+ -.+++.+...|.+|+.+-|.+..
T Consensus 952 lFLDEPTSGLDsqaA~~i-~~~lrkla~tGqtIlCTIHQPS~ 992 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIV-MRFLRKLADTGQTILCTIHQPSI 992 (1391)
T ss_pred EEecCCCCCccHHHHHHH-HHHHHHHHhcCCeEEEEecCCcH
Confidence 999999888887544432 33566677889999999999854
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.26 E-value=1.1e-10 Score=134.66 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=61.5
Q ss_pred HhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CCC---cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 429 FTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SER---SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 429 ~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~~---~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
+..+|+.. .+.+..+++|+|++|+..+++.+ .+| +++|||||+.|+++.+...+.. ++..+.+.|.+++++||+
T Consensus 814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Confidence 44556654 46778899999999988888776 455 8999999999999987776544 555566678999999999
Q ss_pred hhHHH
Q 006859 504 ENLSE 508 (628)
Q Consensus 504 ~~l~~ 508 (628)
++...
T Consensus 893 ~~~i~ 897 (943)
T PRK00349 893 LDVIK 897 (943)
T ss_pred HHHHH
Confidence 76554
No 416
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.8e-12 Score=129.95 Aligned_cols=204 Identities=13% Similarity=0.187 Sum_probs=131.1
Q ss_pred CEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhh
Q 006859 353 PLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTR 431 (628)
Q Consensus 353 ~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~ 431 (628)
.+++.| ++.|+|.++++.++ .|+.++|+||+|+||||++|.+-. |....+|.+.+.++.+..
T Consensus 267 ~V~F~y~~~r~iL~~isf~i~--------~g~tvAiVg~SG~gKsTI~rllfR---------FyD~~sG~I~id~qdir~ 329 (497)
T COG5265 267 NVSFAYDPRRPILNGISFTIP--------LGKTVAIVGESGAGKSTILRLLFR---------FYDVNSGSITIDGQDIRD 329 (497)
T ss_pred EEEeeccccchhhcCcccccc--------CccEEEEEeCCCCcHHHHHHHHHH---------HhCCcCceEEEcchhHHH
Confidence 355666 57899999999999 999999999999999999999999 999999999888777654
Q ss_pred cCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCC----C-CChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 432 MGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR----A-TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 432 ~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~----g-t~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
... +.+..+.........+..|-... | .+..+ .. .++..+. -| +
T Consensus 330 vtq---------------~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~-ee-v~aaa~~-----------aq---i 378 (497)
T COG5265 330 VTQ---------------QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATA-EE-VGAAAEA-----------AQ---I 378 (497)
T ss_pred hHH---------------HHHHHHhCcCcccceehhhhHHHHHhccCccccH-HH-HHHHHHH-----------hh---h
Confidence 320 11111111112233333332210 0 00000 00 0011110 00 1
Q ss_pred HHHhhhCcc---eeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhh
Q 006859 507 SELATIYPN---VKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEV 576 (628)
Q Consensus 507 ~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~ 576 (628)
.++....|. -..+.-+ .+|++|+.|++.+|+.+.+ ++|+.++.+|-..+ +...|....
T Consensus 379 ~~fi~~lP~gy~t~Vgerg-----------lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~- 446 (497)
T COG5265 379 HDFIQSLPEGYDTGVGERG-----------LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS- 446 (497)
T ss_pred hHHHHhCchhhhcccchhe-----------eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-
Confidence 111111121 0011111 7899999999999999888 78999999997665 445554432
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHH
Q 006859 577 KRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQN 618 (628)
Q Consensus 577 ~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~l~~ 618 (628)
...|.+++.|.+..+.. ||+|+||++|++.+.|..++|-.
T Consensus 447 -~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 447 -AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred -CCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHH
Confidence 22378899999998755 89999999999999888777644
No 417
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.25 E-value=4.2e-11 Score=112.93 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=74.3
Q ss_pred ceEEEEecCCCChhHHHHHHHHHHHHHhc-----------CCcc--cCCCCCchHH-HHHHhhcCCccccccCcCchHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCLIVILAQI-----------GCYV--PAHFSTIRVV-DRIFTRMGTVDNLESNSSTFMTE 448 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g~~~~~~~-----------g~~v--~~~~~~i~~~-~~~~~~~~~~~~~~~~~s~~s~~ 448 (628)
.+.+|+||||+|||++|..|+-....... ..++ .+..+.+.+. +..+..+--.+.. . -+|+|
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~--~--~LS~G 98 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVE--Q--ILSGG 98 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCc--c--cCCHH
Confidence 38999999999999999998873211000 0000 0111111100 0000000001111 1 17888
Q ss_pred HHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 449 MKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 449 ~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
+++...+++.+ ..|+++++|||+.|.|+.....+.. .+..+.+.+.+++++||+.++...+++
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~g~tiIiiSH~~~~~~~adr 166 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKHTSQFIVITLKKEMFENADK 166 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEECCHHHHhhCCe
Confidence 88877777654 5799999999999999876655444 444445557899999999776655443
No 418
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=9e-11 Score=121.95 Aligned_cols=201 Identities=18% Similarity=0.213 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEcCccCccc--cccccee
Q 006859 295 RTEICLEALVDAIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILE--SIHNDFI 372 (628)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~l~--~~~~~~~ 372 (628)
....+++.+++.|+=....-..+...|+.|+-+ -++...-. .+..++.+|.-.+. -.||++. .+++.+.
T Consensus 303 ~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl-~~lk~~~~-~~~~~~~fP~~~e~-------~~~p~l~i~~V~f~y~ 373 (582)
T KOG0062|consen 303 KYRAHLQVFIDKFRYNAARASSVQSRIKMLGKL-PALKSTLI-EVLIGFLFPTEGEV-------LSPPNLRISYVAFEYT 373 (582)
T ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHhccC-CCCCccce-ecccceecCCCCCc-------CCCCeeEEEeeeccCC
Confidence 345566777777664444444555566666555 22211111 12234445542111 1122221 1233333
Q ss_pred eccc------ccc-cCCceEEEEecCCCChhHHHHHHHH-HH---------------HHHhcCC-----------c-ccC
Q 006859 373 PNNI------FIS-EAANMVIVTGPNMSGKSTYLQQVCL-IV---------------ILAQIGC-----------Y-VPA 417 (628)
Q Consensus 373 ~~~~------~l~-~~g~~~~i~GpNGsGKSTllk~i~g-~~---------------~~~~~g~-----------~-v~~ 417 (628)
|+.. +++ +.-..++++|+||+||||++|++.+ +. +.+|--| + ...
T Consensus 374 p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~ 453 (582)
T KOG0062|consen 374 PSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKS 453 (582)
T ss_pred CcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHh
Confidence 3331 111 1456789999999999999999998 11 1111000 0 000
Q ss_pred CCCCc-hHHHHHHhhcCCcccc-ccCcCchHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCC
Q 006859 418 HFSTI-RVVDRIFTRMGTVDNL-ESNSSTFMTEMKE-TAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLK 494 (628)
Q Consensus 418 ~~~~i-~~~~~~~~~~~~~~~~-~~~~s~~s~~~~~-~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~ 494 (628)
.+|.. ....+-+..+|++..+ ..++.++|||++- ++.+.....+|.+++|||| |+++|..+ ..++.+.+..-+
T Consensus 454 ~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP---TNhLD~ds-l~AL~~Al~~F~ 529 (582)
T KOG0062|consen 454 FPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP---TNHLDRDS-LGALAKALKNFN 529 (582)
T ss_pred CCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC---CccccHHH-HHHHHHHHHhcC
Confidence 01111 1223345667776544 4456889999985 4444455589999999999 78877776 455777777778
Q ss_pred cEEEEEcCChhHHH
Q 006859 495 AYTIFASHMENLSE 508 (628)
Q Consensus 495 ~~vi~~tH~~~l~~ 508 (628)
.-|+++||+.++..
T Consensus 530 GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 530 GGVVLVSHDEEFIS 543 (582)
T ss_pred CcEEEEECcHHHHh
Confidence 89999999977654
No 419
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.22 E-value=5.1e-11 Score=115.79 Aligned_cols=65 Identities=8% Similarity=0.020 Sum_probs=47.5
Q ss_pred ccCcCchHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC-C-cEEEEEcCCh
Q 006859 439 ESNSSTFMTEMKETAFVMQN-----VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-K-AYTIFASHME 504 (628)
Q Consensus 439 ~~~~s~~s~~~~~~~~i~~~-----~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~-~~vi~~tH~~ 504 (628)
......+|+|++++..++.. +.+|+++++|||++|+|+.....+...+.+ +.+. + .+++++||+.
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~-~~~~~g~~~viiith~~ 192 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE-TACKEGTSQYFLITPKL 192 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH-HhhcCCCceEEEEchhh
Confidence 44567899999997665543 478999999999999998776664443333 4443 4 5799999983
No 420
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.20 E-value=1.8e-09 Score=112.27 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=89.8
Q ss_pred cccccc-cCCceEEEEecCCCChhHHHHHHHHHHHH---------HhcCCcccCCC----CCch----------------
Q 006859 374 NNIFIS-EAANMVIVTGPNMSGKSTYLQQVCLIVIL---------AQIGCYVPAHF----STIR---------------- 423 (628)
Q Consensus 374 ~~~~l~-~~g~~~~i~GpNGsGKSTllk~i~g~~~~---------~~~g~~v~~~~----~~i~---------------- 423 (628)
+..+|. ++|-.+.|+||||||||+|+|+++|+.-. .+--+|+|+.+ |++.
T Consensus 499 ~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg 578 (728)
T KOG0064|consen 499 PKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKG 578 (728)
T ss_pred cceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcC
Confidence 334444 58999999999999999999999996511 11122444332 1110
Q ss_pred -------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHH
Q 006859 424 -------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEH 489 (628)
Q Consensus 424 -------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~ 489 (628)
-.+.++.+-|--|........+++|.+|+..+++.. ..|...+|||.++..+. |- ...+.+.
T Consensus 579 ~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsi-dv---E~~i~~~ 654 (728)
T KOG0064|consen 579 YTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI-DV---EGKIFQA 654 (728)
T ss_pred CCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccccc-ch---HHHHHHH
Confidence 112333343333333444455789999988888877 88999999999766554 22 2345666
Q ss_pred HHhCCcEEEEEcCChhHHHHhhhC
Q 006859 490 LLSLKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 490 l~~~~~~vi~~tH~~~l~~~~~~~ 513 (628)
.+..|.+.+-+||.+.+..+-...
T Consensus 655 ak~~gi~llsithrpslwk~h~~l 678 (728)
T KOG0064|consen 655 AKDAGISLLSITHRPSLWKYHTHL 678 (728)
T ss_pred HHhcCceEEEeecCccHHHHHHHH
Confidence 667899999999999887765543
No 421
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.19 E-value=1.1e-09 Score=115.62 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=95.1
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHH------------hcCCcccCCC----CCch
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA------------QIGCYVPAHF----STIR 423 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~------------~~g~~v~~~~----~~i~ 423 (628)
++.+++++++++. +|..+.|+||||||||+|||.++|+.-.. .--+|+|+.+ |++.
T Consensus 447 g~~lie~Ls~~V~--------~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLR 518 (659)
T KOG0060|consen 447 GDLLIENLSLEVP--------SGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLR 518 (659)
T ss_pred CceeeeeeeeEec--------CCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchh
Confidence 4556777888888 99999999999999999999999965110 0012444332 1110
Q ss_pred -----------------------------HHHHHHhhcCCcc--ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 424 -----------------------------VVDRIFTRMGTVD--NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 424 -----------------------------~~~~~~~~~~~~~--~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
-..+++.+.|--| ..-.....+|.|++|+...++.. +.|.+.+|||-+
T Consensus 519 dQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~T 598 (659)
T KOG0060|consen 519 DQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECT 598 (659)
T ss_pred heeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechh
Confidence 1133445554333 33445667888888887777776 899999999995
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
+..+. + ...++.+...+.|.|.+-+.|...|..+-+
T Consensus 599 SAv~~-d---vE~~~Yr~~r~~giT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 599 SAVTE-D---VEGALYRKCREMGITFISVGHRKSLWKFHD 634 (659)
T ss_pred hhccH-H---HHHHHHHHHHHcCCeEEEeccHHHHHhhhh
Confidence 55443 2 233455666678999999999977766543
No 422
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.18 E-value=6.8e-10 Score=130.42 Aligned_cols=140 Identities=21% Similarity=0.286 Sum_probs=95.9
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCC----CCch-----
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHF----STIR----- 423 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~----~~i~----- 423 (628)
.|.|+++++++. +|+.++|+||-|||||+||.+|.|=. +-.-++ |+|+.+ |++.
T Consensus 534 ~~tL~dIn~~i~--------~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsia-Yv~Q~pWI~ngTvreNILF 604 (1381)
T KOG0054|consen 534 EPTLKDINFEIK--------KGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVA-YVPQQPWIQNGTVRENILF 604 (1381)
T ss_pred cccccceeEEec--------CCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEE-EeccccHhhCCcHHHhhhc
Confidence 346677777777 99999999999999999999999921 111223 555543 2222
Q ss_pred -------HHHHH---------HhhcCCccc--cccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHH
Q 006859 424 -------VVDRI---------FTRMGTVDN--LESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAW 484 (628)
Q Consensus 424 -------~~~~~---------~~~~~~~~~--~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~ 484 (628)
..++. +..+...|. +-.+--++|||+|++..++++. .+.++.+||.|.+..|..-+..+..
T Consensus 605 G~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~ 684 (1381)
T KOG0054|consen 605 GSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFE 684 (1381)
T ss_pred CccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHH
Confidence 12222 333322222 2233446999999999999888 7899999999988888877777777
Q ss_pred HHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 485 SCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 485 ~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
.++..+ -+++|++.+||..++..-+
T Consensus 685 ~ci~~~-L~~KT~ILVTHql~~L~~a 709 (1381)
T KOG0054|consen 685 ECIRGL-LRGKTVILVTHQLQFLPHA 709 (1381)
T ss_pred HHHHhh-hcCCEEEEEeCchhhhhhC
Confidence 666322 2478999999986544443
No 423
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.18 E-value=2e-10 Score=134.85 Aligned_cols=158 Identities=16% Similarity=0.253 Sum_probs=109.6
Q ss_pred CEEEEcCcc--CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGRH--PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~~--~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
+++++|..+ +||+++++.+. +|+.+||+|.-|||||||+.++-.++ +..
T Consensus 1143 ~~~~RYrp~lp~VLk~is~~I~--------p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1143 DLSLRYRPNLPLVLKGISFTIK--------PGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred EeEEEeCCCCcchhcCceEEEc--------CCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence 466677655 78999999999 99999999999999999999998865 556
Q ss_pred hcCCcccCCC----CCchH----H--------HHHHhhc-----------CCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHF----STIRV----V--------DRIFTRM-----------GTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~----~~i~~----~--------~~~~~~~-----------~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+++ .+|+++ |++.. + -+.+++. |++..+..+-+.||.|+||+..+++++ .+
T Consensus 1215 rls-IIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1215 RLS-IIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred cCe-eeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 677 788875 44331 0 1112221 344445556677999999999999887 78
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCee
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~ 530 (628)
.++++|||.|+..|+..-.-+...+.+.+ .+|||+.+.|. +..+.+ +++| .++++|++
T Consensus 1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHR--l~TVmd-~DrV------lVld~G~v 1351 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHR--LNTVMD-SDRV------LVLDAGRV 1351 (1381)
T ss_pred CCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeec--cchhhh-cCeE------EEeeCCeE
Confidence 99999999987777643332223333322 47999999999 444443 3445 44455554
No 424
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.18 E-value=1.2e-10 Score=140.21 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=63.9
Q ss_pred HHhhcCCccc-cccCcCchHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 428 IFTRMGTVDN-LESNSSTFMTEMKETAFVMQNV----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 428 ~~~~~~~~~~-~~~~~s~~s~~~~~~~~i~~~~----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
.+..+|+.+. +.+...++|+|++|+..+++.+ .+|+++|||||+.|+++.+...+.. ++..+.+.|.+++++||
T Consensus 792 ~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~-lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIY-VLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 3455677664 6788899999999988888877 4799999999999999877666444 55566677999999999
Q ss_pred ChhHHH
Q 006859 503 MENLSE 508 (628)
Q Consensus 503 ~~~l~~ 508 (628)
+++...
T Consensus 871 dl~~i~ 876 (1809)
T PRK00635 871 NMHVVK 876 (1809)
T ss_pred CHHHHH
Confidence 976543
No 425
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.8e-11 Score=121.60 Aligned_cols=141 Identities=20% Similarity=0.253 Sum_probs=98.1
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--HHHhcCCccc---------------
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--ILAQIGCYVP--------------- 416 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--~~~~~g~~v~--------------- 416 (628)
+.++-.++.++.+.++.++ .|+.++++||||-|||||||.|+.-. |-.+|-.++.
T Consensus 270 F~ISA~Gk~LFvnA~L~Iv--------~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 270 FDISAQGKLLFVNASLTIV--------YGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred eeeecccceeeeccceEEE--------ecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 5566667778888888899 99999999999999999999998721 1111111100
Q ss_pred -------------------------------------------CCCCCchHHHHHHhhcCCc-cccccCcCchHHHHHHH
Q 006859 417 -------------------------------------------AHFSTIRVVDRIFTRMGTV-DNLESNSSTFMTEMKET 452 (628)
Q Consensus 417 -------------------------------------------~~~~~i~~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~ 452 (628)
+.++. ....+|+..+|.+ +..+++...||+|.+-+
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAE-arARRILAGLGFskEMQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAE-ARARRILAGLGFSKEMQERPTTKFSGGWRMR 420 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccch-hHHHHHHhhcCCChhHhcCCccccCCceeee
Confidence 00000 1234566666655 33455667799988755
Q ss_pred HHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 453 AFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 453 ~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
..+++++ ..|.|++|||| |+++|-.+..| +-.||..-..|.++++|+..+.
T Consensus 421 vSLARALflEPTLLMLDEP---TNHLDLNAVIW-LdNYLQgWkKTLLIVSHDQgFL 472 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEP---TNHLDLNAVIW-LDNYLQGWKKTLLIVSHDQGFL 472 (807)
T ss_pred hhHHHHHhcCceeeeecCC---ccccccceeee-hhhHHhhhhheeEEEecccchH
Confidence 5555555 88999999999 77777776555 5567766678999999997654
No 426
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.4e-09 Score=115.59 Aligned_cols=160 Identities=16% Similarity=0.220 Sum_probs=114.7
Q ss_pred EEEEcCccC-cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HHHh
Q 006859 354 LAIDGGRHP-ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------ILAQ 410 (628)
Q Consensus 354 l~~~~~~~~-~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~~~ 410 (628)
++++.-..+ .+.++++++. +||++||.|-=|||+|-++++|.|.- +.+-
T Consensus 264 l~v~~l~~~~~~~dvSf~vr--------~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 264 LEVRNLSGGGKVRDVSFTVR--------AGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEecCCCCCceeCceeEEe--------CCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 455554443 4677777777 99999999999999999999999932 2233
Q ss_pred cCCcccCCCCC---ch-----------------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHH
Q 006859 411 IGCYVPAHFST---IR-----------------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 411 ~g~~v~~~~~~---i~-----------------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
+| |||.+... +. ...+...++++. .+.....+++|+|-+|...+.+
T Consensus 336 i~-~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 336 IA-YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CE-eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence 44 66654311 10 112223333332 3445678899999999888887
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
-+ +.|+++|+||||+|.|...... .+.++..+++.|..++++|.+ +.++...+++| +++.+|+++
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~e-Iy~li~~lA~~G~ail~iSSE--lpEll~~~DRI------lVm~~Gri~ 480 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAE-IYRLIRELAAEGKAILMISSE--LPELLGLSDRI------LVMREGRIV 480 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHH-HHHHHHHHHHCCCEEEEEeCC--hHHHHhhCCEE------EEEECCEEE
Confidence 76 8899999999999999866555 456888889899999999988 77777777877 444556655
No 427
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.07 E-value=4.7e-12 Score=117.99 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=99.7
Q ss_pred HHHHHHHHhCC-CCcEEEEeCCCC------CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEE
Q 006859 450 KETAFVMQNVS-ERSLIVMDELGR------ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFY 522 (628)
Q Consensus 450 ~~~~~i~~~~~-~~~l~llDE~~~------gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~ 522 (628)
++++.++|... -|.+.++|+.+- |.+..+....+..+++ ..+|.+-++.||
T Consensus 77 ~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~--------------~VGL~~ka~~yP-------- 134 (240)
T COG1126 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLE--------------KVGLADKADAYP-------- 134 (240)
T ss_pred HhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHH--------------HcCchhhhhhCc--------
Confidence 34566666653 477777787753 3333333333333332 245788888899
Q ss_pred EEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 006859 523 VVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHA 595 (628)
Q Consensus 523 ~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~ 595 (628)
.+||+|++||+++|+++|. ++|+|++.+|+-.. +++-+..- .....|++++||+|.++..+
T Consensus 135 -----------~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L-A~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 135 -----------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL-AEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred -----------cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH-HHcCCeEEEEechhHHHHHh
Confidence 9999999999999999998 89999999997654 44433322 22234899999999999999
Q ss_pred HHHHHhhhccCCCHHHHHHH-HHHHHHHHhc
Q 006859 596 AQRLICLKYSNQDEESIRHA-LQNLKESFID 625 (628)
Q Consensus 596 ~~~~~~l~~g~~~~~~~~~~-l~~~~~~~~~ 625 (628)
+||+++|++|++.+++.++. +.+++++=++
T Consensus 203 adrviFmd~G~iie~g~p~~~f~~p~~~R~~ 233 (240)
T COG1126 203 ADRVIFMDQGKIIEEGPPEEFFDNPKSERTR 233 (240)
T ss_pred hheEEEeeCCEEEEecCHHHHhcCCCCHHHH
Confidence 99999999998766655544 5555554443
No 428
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=1.1e-08 Score=93.28 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 445 FMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 445 ~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
.|-|..=+..+...+...-+.+||||-+++++.-..++ .+++..+.+.|..+|++||.+=|..
T Consensus 130 ~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlel-la~l~~la~sGaQ~IiATHSPiLlA 192 (233)
T COG3910 130 MSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLEL-LAILRDLADSGAQIIIATHSPILLA 192 (233)
T ss_pred hccchHHHHHHHHHhccCceEEecCccccCCHHHHHHH-HHHHHHHHhcCCeEEEEecChhhee
Confidence 34444446666677788999999999999999776664 4577778888999999999965544
No 429
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.88 E-value=1e-08 Score=98.09 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=74.2
Q ss_pred HHHHHHhhcCCc--cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEE
Q 006859 424 VVDRIFTRMGTV--DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFA 500 (628)
Q Consensus 424 ~~~~~~~~~~~~--~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~ 500 (628)
..+.++..+|+. +...+.++.+|+|++|+..+++++ .+|.++++|||+...||.....+...+.+.-.+.++|++++
T Consensus 113 r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV 192 (309)
T COG1125 113 RADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV 192 (309)
T ss_pred HHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE
Confidence 456777888886 578889999999999988888776 78999999999999999888876666666555679999999
Q ss_pred cCChhHHHHhhhCcce
Q 006859 501 SHMENLSELATIYPNV 516 (628)
Q Consensus 501 tH~~~l~~~~~~~~~v 516 (628)
||| +.+.....+++
T Consensus 193 THD--idEA~kLadri 206 (309)
T COG1125 193 THD--IDEALKLADRI 206 (309)
T ss_pred ecC--HHHHHhhhceE
Confidence 999 66665555665
No 430
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=3.5e-09 Score=107.52 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHHh-C--C--CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 444 TFMTEMKETAFVMQN-V--S--ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 444 ~~s~~~~~~~~i~~~-~--~--~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
.+|+|+++...++.. + . .|+++++|||++|+++.....+... +..+. .+.+++++||++++...++
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~-l~~~~-~~~tii~isH~~~~~~~~d 240 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKK-LKELS-RSHQVLCITHLPQVAAMAD 240 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHH-HHHHh-CCCEEEEEechHHHHHhcC
Confidence 478898887666542 2 2 9999999999999988655554333 33333 3689999999987655444
No 431
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.83 E-value=4.1e-09 Score=105.48 Aligned_cols=111 Identities=19% Similarity=0.261 Sum_probs=63.7
Q ss_pred ceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHH----------HHHhhc-CCccc-cccCcCchHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVD----------RIFTRM-GTVDN-LESNSSTFMTEMK 450 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~----------~~~~~~-~~~~~-~~~~~s~~s~~~~ 450 (628)
..++|+||||||||||++.++| .+++..|.+.+.+ .+...+ +..+. +....+-+....+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~---------~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLAR---------ILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC---------ccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchH
Confidence 5689999999999999999999 8877766543211 111111 11111 0001111111111
Q ss_pred H--HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 451 E--TAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 451 ~--~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
. +..++ .+.+|+++++|||+. ..+ ..++++.+. .|.+++++||+..+.+..+
T Consensus 183 ~~~~~~~i-~~~~P~villDE~~~---~e~----~~~l~~~~~-~G~~vI~ttH~~~~~~~~~ 236 (270)
T TIGR02858 183 AEGMMMLI-RSMSPDVIVVDEIGR---EED----VEALLEALH-AGVSIIATAHGRDVEDLYK 236 (270)
T ss_pred HHHHHHHH-HhCCCCEEEEeCCCc---HHH----HHHHHHHHh-CCCEEEEEechhHHHHHHh
Confidence 1 11122 226899999999942 211 333444443 5899999999977766653
No 432
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.82 E-value=4e-08 Score=107.76 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=57.1
Q ss_pred cccCcCchHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 438 LESNSSTFMTEMKETAFVMQNV----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 438 ~~~~~s~~s~~~~~~~~i~~~~----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
+-++..++|+|..|+.-++..+ +...|.+||||+.|+...|-..+ ..++..|...|.||+++-|.+++..-++
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kL-l~VL~rLvd~GnTViVIEHNLdVIk~AD 892 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKL-LEVLHRLVDKGNTVIVIEHNLDVIKTAD 892 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecccceEeecC
Confidence 4456778999988877666555 56799999999999998887664 4477888899999999999966544443
No 433
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.81 E-value=1.9e-08 Score=98.96 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=81.5
Q ss_pred HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
...+.+...|+.++..+.+..+|+||+|+..+++++ ++|+++++|||++.+||+-.......+++.-.+.++|++|+||
T Consensus 144 ~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitH 223 (386)
T COG4175 144 RALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITH 223 (386)
T ss_pred HHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 445678889999999999999999999988888876 8899999999999999998887777777766778999999999
Q ss_pred ChhHHHHhhhCcceeEEEEE
Q 006859 503 MENLSELATIYPNVKILHFY 522 (628)
Q Consensus 503 ~~~l~~~~~~~~~v~~~~~~ 522 (628)
| |.+....-+++.++.-+
T Consensus 224 D--LdEAlriG~rIaimkdG 241 (386)
T COG4175 224 D--LDEALRIGDRIAIMKDG 241 (386)
T ss_pred C--HHHHHhccceEEEecCC
Confidence 9 77777666666554443
No 434
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.80 E-value=2.2e-08 Score=94.97 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=77.6
Q ss_pred HHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 427 RIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 427 ~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
..++++|+.+......+++|+|++|+..|++++ .+|++++.|||.+.+||.....+...+.+.-.+.|.|+++..|+.+
T Consensus 130 ~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 457889999999999999999999999999887 7899999999988888866555444333333357999999999988
Q ss_pred HH-HHhhhCcceeEEEEEEEEeCCeeeEeee
Q 006859 506 LS-ELATIYPNVKILHFYVVIRNNRLDFKFQ 535 (628)
Q Consensus 506 l~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 535 (628)
++ +++++. +-+..|+++|+..
T Consensus 210 lA~~Y~~Ri---------igl~~G~ivfDg~ 231 (258)
T COG3638 210 LAKKYADRI---------IGLKAGRIVFDGP 231 (258)
T ss_pred HHHHHHhhh---------eEecCCcEEEeCC
Confidence 76 455544 3456777777644
No 435
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.79 E-value=5.7e-10 Score=109.35 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=112.2
Q ss_pred cccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHH------HHHH
Q 006859 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAI------AWSC 486 (628)
Q Consensus 414 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~------~~~~ 486 (628)
++++.+|.+.+.++.+..+.. ..-.++++.+-|.. ....+.+.|=...|-.|.-+... ...+
T Consensus 51 ~l~p~~G~V~l~g~~i~~~~~-----------kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v 119 (258)
T COG1120 51 LLKPKSGEVLLDGKDIASLSP-----------KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119 (258)
T ss_pred cCCCCCCEEEECCCchhhcCH-----------HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHH
Confidence 777777777766665555441 11223444555543 34567777766555443211110 1112
Q ss_pred HHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHH
Q 006859 487 CEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVI 561 (628)
Q Consensus 487 ~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l 561 (628)
.+.+ +..++.+++++.. ..||+|++|++.+|+++|+ ++|+|++.+
T Consensus 120 ~~aL-----------~~~~~~~la~r~~-------------------~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L 169 (258)
T COG1120 120 EEAL-----------ELLGLEHLADRPV-------------------DELSGGERQRVLIARALAQETPILLLDEPTSHL 169 (258)
T ss_pred HHHH-----------HHhCcHHHhcCcc-------------------cccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence 2222 2345677777765 8999999999999999999 899999999
Q ss_pred HHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHH-H--HHHHHHH
Q 006859 562 ETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA-L--QNLKESF 623 (628)
Q Consensus 562 ~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~-l--~~~~~~~ 623 (628)
|.+.+ +++.+++.......|++++.||++++.++||++++|++|++..+|.+++ + +.+++.|
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHh
Confidence 99998 5554444332333489999999999999999999999999977766543 2 2356655
No 436
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=3e-08 Score=97.68 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=77.2
Q ss_pred HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEc
Q 006859 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFAS 501 (628)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~t 501 (628)
.+..++..+|+.|..++.++.+|+|+||+..|++++ ++|++++.||+++.+||....++.. ++..+. +.|.|++++|
T Consensus 121 RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~-LL~~In~~lglTIvlIT 199 (339)
T COG1135 121 RVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE-LLKDINRELGLTIVLIT 199 (339)
T ss_pred HHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH-HHHHHHHHcCCEEEEEe
Confidence 456678889999999999999999999999999887 8899999999977777765555433 333333 4699999999
Q ss_pred CChhHHHHhhhCcceeEEEEEEEEeCCe
Q 006859 502 HMENLSELATIYPNVKILHFYVVIRNNR 529 (628)
Q Consensus 502 H~~~l~~~~~~~~~v~~~~~~~~~~~~~ 529 (628)
|.++ -+.+.|++|..++-+..+..|.
T Consensus 200 HEm~--Vvk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 200 HEME--VVKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred chHH--HHHHHhhhheEeeCCEEEEecc
Confidence 9944 4555667775555444444433
No 437
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.68 E-value=2.6e-07 Score=90.72 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHH-----HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh--CCcEEEEEcCChhHHHHhhhC
Q 006859 444 TFMTEMKETAFVM-----QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS--LKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 444 ~~s~~~~~~~~i~-----~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~--~~~~vi~~tH~~~l~~~~~~~ 513 (628)
.+|+|++.+..++ +...+..+++|||+..++|...... +...+.+ ...-+|++||...+...++..
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~----l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~ 208 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKR----LADLLKELSKQSQFIITTHNPEMFEDADKL 208 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHH----HHHHHHHHTTTSEEEEE-S-HHHHTT-SEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccc
Confidence 6899988644433 2236678999999988887654443 3333333 348899999998777766543
No 438
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.66 E-value=2.7e-07 Score=111.96 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=62.5
Q ss_pred hhcCCc-cccccCcCchHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 430 TRMGTV-DNLESNSSTFMTEMKETAFVMQNVS----ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 430 ~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~~----~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
..+|+. =.+-++..++|+|+.|+..++..+. .+.+++||||+.|+.+.|-..+. .+++.|.+.|.|++++.|++
T Consensus 1684 ~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~tvivieH~~ 1762 (1809)
T PRK00635 1684 IDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHSVIYIDHDP 1762 (1809)
T ss_pred HHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCeEEEEeCCH
Confidence 334443 2345677889999988777777663 36899999999999998877744 46777889999999999998
Q ss_pred hHHHHhh
Q 006859 505 NLSELAT 511 (628)
Q Consensus 505 ~l~~~~~ 511 (628)
++...++
T Consensus 1763 ~~i~~aD 1769 (1809)
T PRK00635 1763 ALLKQAD 1769 (1809)
T ss_pred HHHHhCC
Confidence 7776654
No 439
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=1.4e-07 Score=92.84 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=73.4
Q ss_pred HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
.+.+.+.-+.+++..++.+..+|+|++|+..+++++ ..|++++||||+..+|..-...+...+.+...+.+.+++++||
T Consensus 117 rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 117 RVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred HHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 445667777888888889999999999998888876 7899999999998888766555544444444456999999999
Q ss_pred ChhHHHHhhhCcceeEEEEE
Q 006859 503 MENLSELATIYPNVKILHFY 522 (628)
Q Consensus 503 ~~~l~~~~~~~~~v~~~~~~ 522 (628)
| ..+..+..++|..++-+
T Consensus 197 D--~eea~~ladrvvvl~~G 214 (345)
T COG1118 197 D--QEEALELADRVVVLNQG 214 (345)
T ss_pred C--HHHHHhhcceEEEecCC
Confidence 9 45555566666444433
No 440
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.62 E-value=1.8e-07 Score=93.40 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=75.8
Q ss_pred HHHHHHhhcCCcc---ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEE
Q 006859 424 VVDRIFTRMGTVD---NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTI 498 (628)
Q Consensus 424 ~~~~~~~~~~~~~---~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi 498 (628)
.....+..+|+.+ .+...+..|||||+|+..|+-++ .+|+|+|.||||.++|..-...+.. ++..+. +.|.+++
T Consensus 130 ~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~-Ll~~l~~e~~~aii 208 (316)
T COG0444 130 RAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD-LLKELQREKGTALI 208 (316)
T ss_pred HHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH-HHHHHHHhcCCEEE
Confidence 4456777888775 45677888999999988887655 8899999999977777655555443 444444 4799999
Q ss_pred EEcCChhHHHHhhhCcceeEEEEEEEEeCCe
Q 006859 499 FASHMENLSELATIYPNVKILHFYVVIRNNR 529 (628)
Q Consensus 499 ~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~ 529 (628)
++||| +.-.+..+++|..++-+-.++.|.
T Consensus 209 lITHD--l~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 209 LITHD--LGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred EEeCC--HHHHHHhcceEEEEECcEEEEeCC
Confidence 99999 555566677887777776665544
No 441
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.60 E-value=2.7e-07 Score=88.33 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=72.2
Q ss_pred HHHHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEc
Q 006859 425 VDRIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFAS 501 (628)
Q Consensus 425 ~~~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~t 501 (628)
..+++..+|+.. .+.+.+..||||++|+..|++++ .+|+++|+|||++.+|..-...+ +.++..+. +++.+.+++|
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I-lnlL~~l~~~~~lt~l~Is 199 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI-LNLLLELKKERGLTYLFIS 199 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH-HHHHHHHHHhcCceEEEEe
Confidence 456778888764 45667888999999999999887 78999999999777776544443 33444444 4789999999
Q ss_pred CChhHHHHhhhCcceeEEEEEEEEeCCeeeEeee
Q 006859 502 HMENLSELATIYPNVKILHFYVVIRNNRLDFKFQ 535 (628)
Q Consensus 502 H~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 535 (628)
||..+. ...|+++ .++++|.++-.+.
T Consensus 200 Hdl~~v--~~~cdRi------~Vm~~G~ivE~~~ 225 (252)
T COG1124 200 HDLALV--EHMCDRI------AVMDNGQIVEIGP 225 (252)
T ss_pred CcHHHH--HHHhhhe------eeeeCCeEEEeec
Confidence 995554 3344554 4556666654443
No 442
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.58 E-value=5.1e-09 Score=97.56 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=76.3
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQ 607 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~ 607 (628)
+.||+|++||..+|+++|- ++|+|.+.+|+... .+++|-.+.+ ...|++++||.|.++.+++|+..++..|++
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~L 226 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEE
Confidence 7899999999999999998 89999999998765 2333322211 123899999999999999999999999998
Q ss_pred CHH-HHHHHHHHHHHHHhccCC
Q 006859 608 DEE-SIRHALQNLKESFIDGRI 628 (628)
Q Consensus 608 ~~~-~~~~~l~~~~~~~~~~~~ 628 (628)
.+. .+.+.+.++++.-|++||
T Consensus 227 vE~g~T~~iF~~P~~~~TedYi 248 (253)
T COG1117 227 VEFGPTDKIFTNPKHKRTEDYI 248 (253)
T ss_pred EEEcCHHhhhcCccHHHHHHHh
Confidence 665 555568889999998885
No 443
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.54 E-value=1e-09 Score=104.13 Aligned_cols=182 Identities=14% Similarity=0.114 Sum_probs=123.0
Q ss_pred HHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC---CCChHHHHH
Q 006859 406 VILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR---ATSSSDGFA 481 (628)
Q Consensus 406 ~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~---gt~~~~~~~ 481 (628)
+++..++..++|++|++.+++..+..+.-.+ ...-.+++..++|.. --.++-+.|+.+. -...+....
T Consensus 49 tlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~--------~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~ 120 (263)
T COG1127 49 TLLRLILGLLRPDKGEILIDGEDIPQLSEEE--------LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESL 120 (263)
T ss_pred HHHHHHhccCCCCCCeEEEcCcchhccCHHH--------HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHH
Confidence 4677777699999999988876665543111 112223444455443 2345666666532 111122222
Q ss_pred HHHHHHHHHHhCCcEEEEEcCChhHHH-HhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCC
Q 006859 482 IAWSCCEHLLSLKAYTIFASHMENLSE-LATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAG 555 (628)
Q Consensus 482 ~~~~~~~~l~~~~~~vi~~tH~~~l~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g 555 (628)
+..-++..|... +|.. .++.+| .+||+|+..|+++|+++|- ++|
T Consensus 121 i~~lv~~KL~~V-----------GL~~~~~~~~P-------------------sELSGGM~KRvaLARAialdPell~~D 170 (263)
T COG1127 121 IRELVLMKLELV-----------GLRGAAADLYP-------------------SELSGGMRKRVALARAIALDPELLFLD 170 (263)
T ss_pred HHHHHHHHHHhc-----------CCChhhhhhCc-------------------hhhcchHHHHHHHHHHHhcCCCEEEec
Confidence 222223333222 2332 366778 9999999999999999998 889
Q ss_pred CCHHHHHHHHH-----HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhccCC
Q 006859 556 LPSTVIETARS-----ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDGRI 628 (628)
Q Consensus 556 ~p~~~l~~a~~-----~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~l~~~~~~~~~~~~ 628 (628)
+|++.+|+... ++.+|.+.-+. |++++|||++.+..+|||++++.+|++...|+.+.+..-.++|+++|+
T Consensus 171 EPtsGLDPI~a~~~~~LI~~L~~~lg~---T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 171 EPTSGLDPISAGVIDELIRELNDALGL---TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred CCCCCCCcchHHHHHHHHHHHHHhhCC---EEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHh
Confidence 99999997655 45555444343 889999999999999999999999999999999998888888877653
No 444
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.54 E-value=3e-06 Score=90.59 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=36.0
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCc
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTI 422 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i 422 (628)
..+++++ +.+. +|++++|+|+||+|||||+++|++ +.+++.+.+
T Consensus 146 ~~vid~l-~~i~--------~Gq~i~I~G~sG~GKStLl~~I~~---------~~~~~~gvI 189 (438)
T PRK07721 146 VRAIDSL-LTVG--------KGQRVGIFAGSGVGKSTLMGMIAR---------NTSADLNVI 189 (438)
T ss_pred hhhhhee-eeec--------CCcEEEEECCCCCCHHHHHHHHhc---------ccCCCeEEE
Confidence 4567776 6777 999999999999999999999999 666655543
No 445
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.54 E-value=4.7e-09 Score=101.44 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=111.1
Q ss_pred cccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 006859 414 YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS 492 (628)
Q Consensus 414 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~ 492 (628)
...|+.|.+.+.++.+.... +++ .+..+.+++.+++|.+ --|.+-+--++..|....+... ...+..
T Consensus 47 L~rPdeG~I~lngr~L~Ds~------k~i-~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~-fd~iv~---- 114 (352)
T COG4148 47 LTRPDEGRIELNGRVLVDAE------KGI-FLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQ-FDQLVA---- 114 (352)
T ss_pred cCCccccEEEECCEEeeccc------CCc-ccChhhheeeeEeeccccccceEEecchhhhhcccchHh-HHHHHH----
Confidence 66667777766555443222 111 1345677888888887 3466777666655543322222 222333
Q ss_pred CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-
Q 006859 493 LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS- 566 (628)
Q Consensus 493 ~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~- 566 (628)
.+++..+.+++| .+||+|++|++.+|+++.. ++|+|-+.+|.+++
T Consensus 115 ----------lLGI~hLL~R~P-------------------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 115 ----------LLGIEHLLDRYP-------------------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred ----------HhCcHHHHhhCC-------------------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 234677888999 9999999999999999887 89999999998876
Q ss_pred ----HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHH
Q 006859 567 ----ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA 615 (628)
Q Consensus 567 ----~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 615 (628)
.+++|.++-+. .+++++|.++++.++||++++|++|++...+..+.
T Consensus 166 EilpylERL~~e~~I---PIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~ 215 (352)
T COG4148 166 EILPYLERLRDEINI---PILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215 (352)
T ss_pred HHHHHHHHHHHhcCC---CEEEEecCHHHHHhhhheEEEecCCeEEecCcHHH
Confidence 45555544333 67899999999999999999999999977665554
No 446
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.51 E-value=2e-07 Score=95.79 Aligned_cols=100 Identities=10% Similarity=0.087 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
.+.+.+..+++.+...+.++.+|+|++|+..+++++ ..|.+++||||.+.+|..-...+...+.+...+.|.|++++||
T Consensus 116 rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTH 195 (352)
T COG3842 116 RVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH 195 (352)
T ss_pred HHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 456778888999999999999999999999998887 7899999999988888766666666666666678999999999
Q ss_pred ChhHHHHhhhCcceeEEEEEEEE
Q 006859 503 MENLSELATIYPNVKILHFYVVI 525 (628)
Q Consensus 503 ~~~l~~~~~~~~~v~~~~~~~~~ 525 (628)
|.+ +.....+++..++-+...
T Consensus 196 Dqe--EAl~msDrI~Vm~~G~I~ 216 (352)
T COG3842 196 DQE--EALAMSDRIAVMNDGRIE 216 (352)
T ss_pred CHH--HHhhhccceEEccCCcee
Confidence 943 555555666555554433
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.48 E-value=3e-07 Score=93.91 Aligned_cols=122 Identities=11% Similarity=0.171 Sum_probs=85.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC---------------------CCch---------------H
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF---------------------STIR---------------V 424 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~---------------------~~i~---------------~ 424 (628)
+.++++.+|.||.|||||+++++| .++++. +.+. +
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag---------~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF 436 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAG---------RLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQF 436 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhc---------CCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHH
Confidence 568999999999999999999999 333322 1111 1
Q ss_pred HHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 425 VDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
....+.-+.+.+-+++.+.++|+|..|+..++-.+ .+.++.++|||.+-.|.......+..+.+.+...+.|.+++.|+
T Consensus 437 ~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhd 516 (592)
T KOG0063|consen 437 VNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHD 516 (592)
T ss_pred HHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhH
Confidence 22223334445566667778888877766665555 67899999999777776555444444556666788999999999
Q ss_pred hhHHHHhh
Q 006859 504 ENLSELAT 511 (628)
Q Consensus 504 ~~l~~~~~ 511 (628)
.-++.+..
T Consensus 517 fImaTYla 524 (592)
T KOG0063|consen 517 FIMATYLA 524 (592)
T ss_pred HHHHHhhc
Confidence 77776554
No 448
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=1.5e-08 Score=97.61 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=68.9
Q ss_pred hhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-----HHHHHHH
Q 006859 504 ENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-----ITSRITK 573 (628)
Q Consensus 504 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-----~~~~l~~ 573 (628)
.+|..+.+.+| ++||+|++||+++|+++|. ++|+|-..+|...+ .+.++.+
T Consensus 118 VgL~~~~~~~P-------------------~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~ 178 (248)
T COG1116 118 VGLAGFEDKYP-------------------HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE 178 (248)
T ss_pred cCCcchhhcCc-------------------cccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH
Confidence 44777888899 9999999999999999999 89999999998766 3445555
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcc
Q 006859 574 KEVKRMEINCLQYKQIQMLYHAAQRLICLKYS 605 (628)
Q Consensus 574 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g 605 (628)
+.+. |++++|||++++..++|||++|.++
T Consensus 179 ~~~~---TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 179 ETRK---TVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hhCC---EEEEEeCCHHHHHhhhCEEEEecCC
Confidence 5555 9999999999999999999999884
No 449
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.46 E-value=1.4e-06 Score=91.30 Aligned_cols=151 Identities=12% Similarity=0.184 Sum_probs=106.1
Q ss_pred EEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H----------HH
Q 006859 354 LAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I----------LA 409 (628)
Q Consensus 354 l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~----------~~ 409 (628)
++....+ .+.+.++++++. .|++++|.|-.|-|-+.|+..|+|+. + ..
T Consensus 263 L~v~~~~~~~~v~~vs~~Vr--------~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 263 LSVKDRRGVTAVKDVSFEVR--------AGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEeecCCCCceeeeeeeEEe--------cCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4444433 466777888888 99999999999999999999999954 1 11
Q ss_pred hcCCcccCCC---CC---ch----------------------------HHHHHHhhcCCc-cccccCcCchHHHHHHHHH
Q 006859 410 QIGCYVPAHF---ST---IR----------------------------VVDRIFTRMGTV-DNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 410 ~~g~~v~~~~---~~---i~----------------------------~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~ 454 (628)
-+| |||.+. |- ++ ...+++.+++.. .+...+..++|+|.+|...
T Consensus 335 G~~-~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 335 GLA-YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred CCc-cCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 233 666543 11 11 122344445444 3344556789999998888
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+.+.+ ..|++++..+|++|.|......+...+++ ..+.|+.|++++-+ |.++...++++
T Consensus 414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e-~r~~G~AVLLiS~d--LDEil~lsDrI 473 (501)
T COG3845 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE-LRDAGKAVLLISED--LDEILELSDRI 473 (501)
T ss_pred hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-HHhcCCEEEEEehh--HHHHHHhhhee
Confidence 88776 78999999999999997554444443333 45679999999988 77777777776
No 450
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.43 E-value=2.1e-08 Score=88.93 Aligned_cols=101 Identities=12% Similarity=0.199 Sum_probs=82.0
Q ss_pred hhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-----HHHHHHH
Q 006859 504 ENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-----ITSRITK 573 (628)
Q Consensus 504 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-----~~~~l~~ 573 (628)
+.+.++++++| ..|++|++|++.+|+++.. ++|+|+..+|+.-. ++++|..
T Consensus 129 lrl~~~adr~p-------------------lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~ 189 (242)
T COG4161 129 LRLKPYADRYP-------------------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE 189 (242)
T ss_pred hccccccccCc-------------------eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh
Confidence 34678888888 8999999999999998887 78999988886543 4555533
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhccC
Q 006859 574 KEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHALQNLKESFIDGR 627 (628)
Q Consensus 574 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~l~~~~~~~~~~~ 627 (628)
- +. |-++++|..+.+...+.+++.|++|++.+.|..+++.+++.+-+..|
T Consensus 190 t-gi---tqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p~te~f~~y 239 (242)
T COG4161 190 T-GI---TQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNY 239 (242)
T ss_pred c-Cc---eEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCccHHHHHHH
Confidence 2 22 66789999999999999999999999999999999888776655554
No 451
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=2.3e-08 Score=97.98 Aligned_cols=82 Identities=12% Similarity=0.162 Sum_probs=66.9
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
+.||+|+.|++++|..+|. ++|+|++.+|.... +++.+.+-......|++++|||++.+..+|||+++|++|+
T Consensus 137 ~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~ 216 (235)
T COG1122 137 FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216 (235)
T ss_pred cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCE
Confidence 9999999999999999998 88999999998766 4444443322222389999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+..++.+..
T Consensus 217 i~~~g~p~~ 225 (235)
T COG1122 217 ILADGDPAE 225 (235)
T ss_pred EeecCCHHH
Confidence 977766443
No 452
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.42 E-value=3.8e-08 Score=89.07 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=67.9
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-----HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-----ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLK 603 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-----~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~ 603 (628)
..||+|++|++++|+++|. ++|+|++.+|+.-- +++.|.++ +. |++++||.|.++..++..++++.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-gr---TMv~VTHEM~FAR~Vss~v~fLh 226 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GR---TMVVVTHEMGFARDVSSHVIFLH 226 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CC---eEEEEeeehhHHHhhhhheEEee
Confidence 8899999999999999998 89999999987644 55666543 44 89999999999999999999999
Q ss_pred ccCCCHHHHHHH
Q 006859 604 YSNQDEESIRHA 615 (628)
Q Consensus 604 ~g~~~~~~~~~~ 615 (628)
+|.++++|+++.
T Consensus 227 ~G~iEE~G~P~q 238 (256)
T COG4598 227 QGKIEEEGPPEQ 238 (256)
T ss_pred cceecccCChHH
Confidence 999999988775
No 453
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.41 E-value=7.4e-07 Score=91.11 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=71.3
Q ss_pred HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 424 VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
.+......+++.+.+++.++.+|+|++|+..+.+++ .+|+++++|||.+.+|..-...+...+.+.-.+.+.|++++||
T Consensus 113 rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH 192 (338)
T COG3839 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH 192 (338)
T ss_pred HHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 344566778999999999999999999999998887 8899999999977776655555444444433356899999999
Q ss_pred ChhHHHHhhhCcceeEEE
Q 006859 503 MENLSELATIYPNVKILH 520 (628)
Q Consensus 503 ~~~l~~~~~~~~~v~~~~ 520 (628)
| -.+.....+++..++
T Consensus 193 D--q~EAmtladri~Vm~ 208 (338)
T COG3839 193 D--QVEAMTLADRIVVMN 208 (338)
T ss_pred C--HHHHHhhCCEEEEEe
Confidence 9 444444455554444
No 454
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.40 E-value=6.6e-08 Score=87.88 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=76.8
Q ss_pred ChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-----HHHHHH
Q 006859 503 MENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-----ITSRIT 572 (628)
Q Consensus 503 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-----~~~~l~ 572 (628)
..++..+.++.| .+||+|++||+.+|+.+.+ ++|+|-+.+|.+-+ ++..+.
T Consensus 116 ~vGl~~~~~RLP-------------------~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~ 176 (231)
T COG3840 116 QVGLAGFLKRLP-------------------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176 (231)
T ss_pred HhChhhHhhhCc-------------------cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence 466888889999 9999999999999998888 89999999999877 444555
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHH
Q 006859 573 KKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQDEESIRHA 615 (628)
Q Consensus 573 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~~~~~~~~ 615 (628)
.+.+ .|++++||..+.+.++++|++++++|++..++..+.
T Consensus 177 ~E~~---~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 177 DERK---MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HhhC---CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHH
Confidence 4444 499999999999999999999999999977655444
No 455
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.40 E-value=1.3e-06 Score=80.57 Aligned_cols=135 Identities=14% Similarity=0.197 Sum_probs=93.7
Q ss_pred cCCcccCCCCCch-----HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHH
Q 006859 411 IGCYVPAHFSTIR-----VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAW 484 (628)
Q Consensus 411 ~g~~v~~~~~~i~-----~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~ 484 (628)
.| -.|-+.|... .+++.+..+.+.+..++...++|||++|+++++..+ .+.+.++||||...+|......+..
T Consensus 98 FG-RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk 176 (252)
T COG4604 98 FG-RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176 (252)
T ss_pred cC-CCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHH
Confidence 45 5677777664 456677888888888888999999999999998665 7789999999987777766666554
Q ss_pred HHHHHHH-hCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHH
Q 006859 485 SCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTV 560 (628)
Q Consensus 485 ~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~ 560 (628)
+++.+. +.++|++++.||.+++.... +.+ +-+.+|+++ ..|.+....-.-.+..+++.|-.+
T Consensus 177 -~Lrrla~el~KtiviVlHDINfAS~Ys--D~I------VAlK~G~vv-----~~G~~~eii~~~~L~eiydm~i~v 239 (252)
T COG4604 177 -ILRRLADELGKTIVVVLHDINFASCYS--DHI------VALKNGKVV-----KQGSPDEIIQPEILSEIYDMDIPV 239 (252)
T ss_pred -HHHHHHHHhCCeEEEEEecccHHHhhh--hhe------eeecCCEEE-----ecCCHHHhcCHHHHHHHhcCCcee
Confidence 444444 57999999999977765332 222 233444443 445555444444566677776554
No 456
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.36 E-value=1.2e-06 Score=88.59 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=39.1
Q ss_pred CchHHHHHHHHHHHHhC----------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 443 STFMTEMKETAFVMQNV----------SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 443 s~~s~~~~~~~~i~~~~----------~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
..+|.|+++...++..+ ..|+++++|||++++|+..... +.+.+.+.+.+++.++|...+..
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~----l~~~l~~~~q~ii~~~~~~~~~~ 253 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAA----LLDAIEGRVQTFVTTTDLADFDA 253 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHH----HHHHhhcCCCEEEEeCCchhccc
Confidence 34688888766666542 6899999999988887754433 45555444544444444444444
No 457
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.36 E-value=4e-06 Score=82.61 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=59.2
Q ss_pred CCceEEEEecCCCChhHH-HHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCcc--cccc------Cc-CchHHHH-
Q 006859 381 AANMVIVTGPNMSGKSTY-LQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVD--NLES------NS-STFMTEM- 449 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTl-lk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~--~~~~------~~-s~~s~~~- 449 (628)
+|++++|+||||+||||| ++.+++..-...-+.|+..+...-.+... +..+|..- .... .. ..+++..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQ-MMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH-HHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 799999999999999999 67777733222222344433222112222 23333210 0000 00 0112111
Q ss_pred --HHHHHHHHhC--CCCcEEEEeCCCCCCChH-HHH--HHHHHHHHHHHhCCcEEEEEcC
Q 006859 450 --KETAFVMQNV--SERSLIVMDELGRATSSS-DGF--AIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 450 --~~~~~i~~~~--~~~~l~llDE~~~gt~~~-~~~--~~~~~~~~~l~~~~~~vi~~tH 502 (628)
..+..++... .+++++++|||+.+.... |.. ......+..+.+.+.++++++|
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~ 161 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTAN 161 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 1122233322 478999999997765211 222 1123344545566776665544
No 458
>PRK13695 putative NTPase; Provisional
Probab=98.34 E-value=1.2e-06 Score=82.66 Aligned_cols=124 Identities=15% Similarity=0.242 Sum_probs=63.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHHHHHhcCC----cccCC---CCC---chH---H---HHHHhhcCC--ccccccCcCch
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLIVILAQIGC----YVPAH---FST---IRV---V---DRIFTRMGT--VDNLESNSSTF 445 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~~~~~~~g~----~v~~~---~~~---i~~---~---~~~~~~~~~--~~~~~~~~s~~ 445 (628)
.++|+|+||+|||||++.+++-.. .-|. ++... .+. +.. . ...+...+. .....+.....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~--~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 79 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK--EEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNL 79 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEeh
Confidence 478999999999999999887421 1221 11110 000 000 0 000111111 01111222334
Q ss_pred HHHHHHHHHHHH-hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 446 MTEMKETAFVMQ-NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 446 s~~~~~~~~i~~-~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
++..+....+.+ .+..++++++|||+. ++..+ ..... .+..+.+.+..+++++|+..+..+.+.
T Consensus 80 sgle~~~~~l~~~~l~~~~~lllDE~~~-~e~~~-~~~~~-~l~~~~~~~~~~i~v~h~~~~~~~~~~ 144 (174)
T PRK13695 80 EDLERIGIPALERALEEADVIIIDEIGK-MELKS-PKFVK-AVEEVLDSEKPVIATLHRRSVHPFVQE 144 (174)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCCc-chhhh-HHHHH-HHHHHHhCCCeEEEEECchhhHHHHHH
Confidence 444443333333 346899999999842 33333 22233 344444778999999999655544443
No 459
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.34 E-value=5.7e-09 Score=108.46 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=76.2
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
+.||+|+.|++.+|++++. ++|+|++.+|...+ +++.|.+.......|++++|||++.+..+|||+++|++|+
T Consensus 160 ~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ 239 (330)
T PRK09473 160 HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239 (330)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999998 88999999998877 4444443322223489999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhccC
Q 006859 607 QDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
+.+.+..+. ++.+.++||+.+
T Consensus 240 ive~g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 240 TMEYGNARDVFYQPSHPYSIGL 261 (330)
T ss_pred EEEECCHHHHHhCCCCHHHHHH
Confidence 988766555 456888888753
No 460
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.32 E-value=6.7e-09 Score=107.87 Aligned_cols=94 Identities=7% Similarity=0.099 Sum_probs=75.1
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
+.||+|++|++.+|++++. ++|+|++.+|...+ +++.|.+.......|++++|||++.+..+|||+++|.+|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999998 89999999998776 5554443322223489999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhccC
Q 006859 607 QDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
+.+.+..+. +.++.++|++.+
T Consensus 240 ive~g~~~~i~~~~~~py~~~l 261 (331)
T PRK15079 240 AVELGTYDEVYHNPLHPYTKAL 261 (331)
T ss_pred EEEEcCHHHHHcCCCCHHHHHH
Confidence 987766554 455777887653
No 461
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.31 E-value=3.8e-06 Score=80.03 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=67.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHHHHH-hcCCcccCCCCCchHHHHHHhhcCCc----------cccccCcCchHHHHHH-
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLIVILA-QIGCYVPAHFSTIRVVDRIFTRMGTV----------DNLESNSSTFMTEMKE- 451 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~~~~~-~~g~~v~~~~~~i~~~~~~~~~~~~~----------~~~~~~~s~~s~~~~~- 451 (628)
++.|.||.|+|||||.-.++--.... .-.+|+..+.. ..-+...+..+|.. ...+.....++.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~-~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-PEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 36899999999999988776633221 11224433221 11122222333332 2222333344555443
Q ss_pred ----HHHHHHh--CCCCcEEEEeCCCCCCCh--HHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 452 ----TAFVMQN--VSERSLIVMDELGRATSS--SDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 452 ----~~~i~~~--~~~~~l~llDE~~~gt~~--~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
+..+... ..+++++++|||+...+. .........++..+.+.|.++++++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 1222222 257999999999776652 111222334556666779999999998654
No 462
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=7e-09 Score=107.64 Aligned_cols=94 Identities=11% Similarity=0.155 Sum_probs=76.1
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
+.||+|++|++.+|++++. ++|+|++.+|...+ +++.|.+.......|++++|||+..+..+|||+++|..|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999998 88999999998876 5555544322223489999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhccC
Q 006859 607 QDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
+.+.+..+. +.++.++||+.+
T Consensus 233 ive~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 233 CVEKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EEEECCHHHHhcCCCCHHHHHH
Confidence 988776655 455778888653
No 463
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=7.4e-09 Score=107.47 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=75.4
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
++||+|++|++.+|++++. ++|+|++.+|...+ +++.|.+.......+++++|||++.+..+|||+++|.+|+
T Consensus 152 ~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ 231 (326)
T PRK11022 152 HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQ 231 (326)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999998 88999999998766 5554544322223489999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhccC
Q 006859 607 QDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
+.+.+..+. +.++.++||+.+
T Consensus 232 ive~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 232 VVETGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred EEEECCHHHHhhCCCChHHHHH
Confidence 987766554 455777887643
No 464
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.28 E-value=1.2e-06 Score=84.27 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=56.8
Q ss_pred eEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCC-CCCchHHHHHHhhc--C----Ccc-ccccCcCchHHHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH-FSTIRVVDRIFTRM--G----TVD-NLESNSSTFMTEMKETAFV 455 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~-~~~i~~~~~~~~~~--~----~~~-~~~~~~s~~s~~~~~~~~i 455 (628)
.++|+||+||||||+++.+.+ ++++. .+.+..+..-.... + ..+ .......+|... +
T Consensus 3 lilI~GptGSGKTTll~~ll~---------~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~------i 67 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMID---------YINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENA------L 67 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHH---------HhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHH------H
Confidence 689999999999999999888 44432 22211111000000 0 000 000111223222 1
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
...+ ..|+++++||+ .+... ...+++ ....|..++.++|..+..+..++
T Consensus 68 ~~aLr~~pd~ii~gEi---rd~e~----~~~~l~-~a~~G~~v~~t~Ha~~~~~~~~R 117 (198)
T cd01131 68 KAALRQDPDVILVGEM---RDLET----IRLALT-AAETGHLVMSTLHTNSAAKTIDR 117 (198)
T ss_pred HHHhcCCcCEEEEcCC---CCHHH----HHHHHH-HHHcCCEEEEEecCCcHHHHHhH
Confidence 1222 57999999999 44322 222333 33568899999998765544433
No 465
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=8.2e-09 Score=107.50 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=74.3
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +++.|.+.......|++++|||++.+..+|||+++|+.|+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999988 88999999997766 5554443222223389999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhccC
Q 006859 607 QDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
+.+++..+. +..+.++|++.+
T Consensus 237 ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 237 TVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EEEECCHHHHHhCCCCHHHHHH
Confidence 987766554 355677777643
No 466
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.26 E-value=5e-08 Score=95.27 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=67.3
Q ss_pred hhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-----HHHHHHH
Q 006859 504 ENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-----ITSRITK 573 (628)
Q Consensus 504 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-----~~~~l~~ 573 (628)
.++.++.++.. ++||+|+.||+.+|+++|. ++|||...+|.+.+ ++++|+.
T Consensus 127 Vgm~~~~~r~i-------------------~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 127 VGMEDLRDRQI-------------------GELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred cCchhhhCCcc-------------------cccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 45677777766 9999999999999999999 88999999998877 5555554
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 574 KEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 574 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
+ +. |+++++||++.+.+++|++++++..-
T Consensus 188 e-g~---tIl~vtHDL~~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 188 E-GK---TVLMVTHDLGLVMAYFDRVICLNRHL 216 (254)
T ss_pred C-CC---EEEEEeCCcHHhHhhCCEEEEEcCee
Confidence 4 44 99999999999999999999996543
No 467
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.25 E-value=1e-08 Score=106.66 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=66.8
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +++.|.+.......|++++||+++.+..+|||+++|++|+
T Consensus 139 ~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~ 218 (343)
T TIGR02314 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218 (343)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 7999999999999999998 88999999998877 4454444322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+.+.+..+.
T Consensus 219 iv~~g~~~~ 227 (343)
T TIGR02314 219 LIEQGTVSE 227 (343)
T ss_pred EEEEcCHHH
Confidence 876655444
No 468
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.24 E-value=6.7e-07 Score=75.76 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=30.9
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHH
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVC 403 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~ 403 (628)
+++++++++.+. +|++++|+||+|||||||++++.
T Consensus 2 ~~aL~~vsl~i~--------~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVY--------GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEc--------CCEEEEEEcCCCCCHHHHHHHhh
Confidence 567777777777 89999999999999999999975
No 469
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=1.8e-08 Score=105.62 Aligned_cols=93 Identities=10% Similarity=0.129 Sum_probs=72.8
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|.+.+|...+ +.+.+.+.......|++++|||++++..+||++++|++|+
T Consensus 133 ~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGV 212 (356)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 8999999999999999998 88999999998766 4555544322223489999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHhcc
Q 006859 607 QDEESIRHAL-QNLKESFIDG 626 (628)
Q Consensus 607 ~~~~~~~~~l-~~~~~~~~~~ 626 (628)
+...+.++.+ .++++.|+..
T Consensus 213 i~~~g~~~~~~~~p~~~~~~~ 233 (356)
T PRK11650 213 AEQIGTPVEVYEKPASTFVAS 233 (356)
T ss_pred EEEECCHHHHHhCCccHHHHH
Confidence 9776665543 4455555443
No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=1.7e-06 Score=80.05 Aligned_cols=121 Identities=22% Similarity=0.234 Sum_probs=61.1
Q ss_pred eEEEEecCCCChhHHHHHHHHHHHHHhcC--CcccCCCCCchHHHH--HHhhcCCcccc---ccCcCch-HHHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLIVILAQIG--CYVPAHFSTIRVVDR--IFTRMGTVDNL---ESNSSTF-MTEMKETAFV 455 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~~~~~~~g--~~v~~~~~~i~~~~~--~~~~~~~~~~~---~~~~s~~-s~~~~~~~~i 455 (628)
+++|+||||+||||+++.+++.... +-+ .|+..+......... .+...+..+.. ....... .....+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3789999999999999999994432 111 133333222111111 11111111110 0111111 1222233333
Q ss_pred HHhCCCCcEEEEeCCCCCCChH---------HHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 456 MQNVSERSLIVMDELGRATSSS---------DGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 456 ~~~~~~~~l~llDE~~~gt~~~---------~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
......+.++++||+..-.... ........+.+...+.+.++++++|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 4444789999999995322111 1122233444555556899999999854
No 471
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.21 E-value=3.8e-08 Score=94.67 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=61.0
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
++||+|++||+++|++++. ++|+|+..+|.... +++.+.+.......|++++|||.+.+ .+|||++.+++|+
T Consensus 141 ~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~ 219 (226)
T COG1136 141 SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGK 219 (226)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCe
Confidence 9999999999999999998 89999999997655 66655544333344899999999876 6899999999998
Q ss_pred C
Q 006859 607 Q 607 (628)
Q Consensus 607 ~ 607 (628)
+
T Consensus 220 ~ 220 (226)
T COG1136 220 I 220 (226)
T ss_pred e
Confidence 4
No 472
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.19 E-value=2.2e-06 Score=88.35 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=63.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCcc--cc---ccCcCchHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVD--NL---ESNSSTFMTEMKETAFV 455 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~--~~---~~~~s~~s~~~~~~~~i 455 (628)
.|..++|+||+|||||||++.+++ ++|+..+.+.+-+ . ..+.... .. ......-.... ....+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~---------~~~~~~~iv~ied-~-~El~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 210 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVD---------EIPKDERIITIED-T-REIFLPHPNYVHLFYSKGGQGLAKV-TPKDL 210 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc---------cCCccccEEEEcC-c-cccCCCCCCEEEEEecCCCCCcCcc-CHHHH
Confidence 788999999999999999999999 8887766443321 1 1111110 00 00000000000 01112
Q ss_pred HH--hCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCc-EEEEEcCChhHHHHhhhC
Q 006859 456 MQ--NVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKA-YTIFASHMENLSELATIY 513 (628)
Q Consensus 456 ~~--~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~-~vi~~tH~~~l~~~~~~~ 513 (628)
+. .-..|+.+++|||. +. + .+.+++.+. .|. .++.++|.....+..++.
T Consensus 211 l~~~Lr~~pd~ii~gE~r---~~-e----~~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl 262 (308)
T TIGR02788 211 LQSCLRMRPDRIILGELR---GD-E----AFDFIRAVN-TGHPGSITTLHAGSPEEAFEQL 262 (308)
T ss_pred HHHHhcCCCCeEEEeccC---CH-H----HHHHHHHHh-cCCCeEEEEEeCCCHHHHHHHH
Confidence 21 12789999999993 32 1 223455444 344 569999997766655443
No 473
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.16 E-value=1.7e-06 Score=65.30 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=25.3
Q ss_pred ccccccCCceEEEEecCCCChhHHHHHHHH
Q 006859 375 NIFISEAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 375 ~~~l~~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
++.+++.|++++|+|||||||||++..|.-
T Consensus 16 ~~~~~~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 16 TIDFDPRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEeecCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 444555678999999999999999999987
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.15 E-value=5.2e-06 Score=79.13 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=62.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCcccc---ccCc-CchHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNL---ESNS-STFMTEMKETAFVM 456 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~---~~~~-s~~s~~~~~~~~i~ 456 (628)
.|+.++|+|||||||||+++.+++ ++|+..+.+.+-+..-....-.... .... ....... ....++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~---------~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 93 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLA---------FIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEV-TMADLL 93 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh---------hcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCcc-CHHHHH
Confidence 789999999999999999999999 8887766554322111111000000 0000 0000000 111122
Q ss_pred HhC--CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcE-EEEEcCChhHHHHhhh
Q 006859 457 QNV--SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAY-TIFASHMENLSELATI 512 (628)
Q Consensus 457 ~~~--~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~-vi~~tH~~~l~~~~~~ 512 (628)
..+ ..|+.++++|+ .++ +. +.+++. ...|.. ++.+.|-....+...+
T Consensus 94 ~~~lR~~pd~i~igEi---r~~-ea----~~~~~a-~~tGh~g~~~T~Ha~s~~~~~~R 143 (186)
T cd01130 94 RSALRMRPDRIIVGEV---RGG-EA----LDLLQA-MNTGHPGGMTTIHANSAEEALTR 143 (186)
T ss_pred HHHhccCCCEEEEEcc---CcH-HH----HHHHHH-HhcCCCCceeeecCCCHHHHHHH
Confidence 111 67999999999 443 21 223333 245777 8888887655544433
No 475
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.15 E-value=6.6e-06 Score=84.29 Aligned_cols=132 Identities=15% Similarity=0.165 Sum_probs=82.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcc-cCC---------------------CCC------chHHH------
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV-PAH---------------------FST------IRVVD------ 426 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v-~~~---------------------~~~------i~~~~------ 426 (628)
.|++.+++|-||-||||-++.++|=. -...|-|. |++ .+. ...+|
T Consensus 99 pg~vlglvgtngigkstAlkilagk~-kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 99 PGQVLGLVGTNGIGKSTALKILAGKQ-KPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred cchhccccccCcccHHHHHHHHhCCC-CCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 79999999999999999999999911 00000000 000 000 00111
Q ss_pred ------------------HHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 006859 427 ------------------RIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCC 487 (628)
Q Consensus 427 ------------------~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~ 487 (628)
.+...+.+...+++....+|+|.-|+..++..+ ...++.++|||.+-++...... +...+
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLk-aA~~I 256 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLK-AAITI 256 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhh-HHHHH
Confidence 222333344445555666777766655555444 7789999999955555433333 34466
Q ss_pred HHHHhCCcEEEEEcCChhHHHHhhhCc
Q 006859 488 EHLLSLKAYTIFASHMENLSELATIYP 514 (628)
Q Consensus 488 ~~l~~~~~~vi~~tH~~~l~~~~~~~~ 514 (628)
..+......++++-||+.+.++...+.
T Consensus 257 Rsl~~p~~YiIVVEHDLsVLDylSDFi 283 (592)
T KOG0063|consen 257 RSLINPDRYIIVVEHDLSVLDYLSDFI 283 (592)
T ss_pred HHhhCCCCeEEEEEeechHHHhhhcce
Confidence 777788899999999988888776543
No 476
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.15 E-value=4.1e-06 Score=83.82 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=39.4
Q ss_pred cCchHHHHHHHHHHHHhC---CCC-cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 442 SSTFMTEMKETAFVMQNV---SER-SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 442 ~s~~s~~~~~~~~i~~~~---~~~-~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
...+|.|++++..++..+ ... .++++|||-.++.|.-...+.. ++..+.+.+..++++||.+.+.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~-~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIE-LLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHH-HHHHTGGGSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHH-HHHhhCccCCEEEEeCccchhc
Confidence 344588888875544433 233 9999999999998854444332 2232223478999999997653
No 477
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=7.2e-06 Score=95.27 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=95.1
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHH--hcCCcccCCC
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILA--QIGCYVPAHF 419 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~--~~g~~v~~~~ 419 (628)
.+++++++.-+. +|+.+.+.||.||||||||+.++|.. ... .++ |.+...
T Consensus 128 ~~il~~~sg~~~--------pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~a-Y~~e~D 198 (1391)
T KOG0065|consen 128 IQILKDISGIIK--------PGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVA-YNSEQD 198 (1391)
T ss_pred ceeecCcceeEc--------CCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEE-eccccc
Confidence 356777777777 99999999999999999999999932 000 000 111110
Q ss_pred C-------------------------Cch-------HHHHHHhhcCCccccccC-----cCchHHHHHHHHHHHHhC-CC
Q 006859 420 S-------------------------TIR-------VVDRIFTRMGTVDNLESN-----SSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 420 ~-------------------------~i~-------~~~~~~~~~~~~~~~~~~-----~s~~s~~~~~~~~i~~~~-~~ 461 (628)
- +.. ..|.+++-+|++...+.. ..-.|+|++++..+...+ .+
T Consensus 199 vH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~ 278 (1391)
T KOG0065|consen 199 VHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGP 278 (1391)
T ss_pred cccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecC
Confidence 0 000 345667777776444332 234678888877777655 78
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
++.+.+||+++|+|......+...+...-...+.|++++.+.+. .+..+..+.|
T Consensus 279 ~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s-~~~~~lFD~v 332 (1391)
T KOG0065|consen 279 ASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPS-PEIYDLFDDV 332 (1391)
T ss_pred cceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCC-hHHHHhhhhe
Confidence 99999999999999877776655444433346889999888853 2333334444
No 478
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=4e-08 Score=102.76 Aligned_cols=93 Identities=9% Similarity=0.084 Sum_probs=72.5
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||.+++..+|||+++|++|+
T Consensus 135 ~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~ 214 (351)
T PRK11432 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGK 214 (351)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 8899999999999999998 88999999998776 4444443322223389999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHhcc
Q 006859 607 QDEESIRHAL-QNLKESFIDG 626 (628)
Q Consensus 607 ~~~~~~~~~l-~~~~~~~~~~ 626 (628)
+...+.++.+ .++.+.|+.+
T Consensus 215 i~~~g~~~~~~~~p~~~~~a~ 235 (351)
T PRK11432 215 IMQIGSPQELYRQPASRFMAS 235 (351)
T ss_pred EEEEcCHHHHHhCCCchHHHH
Confidence 9877666543 4455555544
No 479
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.10 E-value=1.2e-05 Score=78.76 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=83.8
Q ss_pred hHHHHHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEE
Q 006859 423 RVVDRIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIF 499 (628)
Q Consensus 423 ~~~~~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~ 499 (628)
..+.+.+...|+.. .+.+.+..||+|++|+..|++++ .+|++++.|||.+.+|..-...+.. ++..+. +.+.+.+|
T Consensus 87 ~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIln-LL~dlq~~~~lt~lF 165 (268)
T COG4608 87 ERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILN-LLKDLQEELGLTYLF 165 (268)
T ss_pred HHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHH-HHHHHHHHhCCeEEE
Confidence 34566777778764 66778889999999999998887 7899999999966666533333322 344444 46999999
Q ss_pred EcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCH
Q 006859 500 ASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPS 558 (628)
Q Consensus 500 ~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~ 558 (628)
+|||. .-....++++..++.+..++.+... .+-. .++ ..|..++....-.|.
T Consensus 166 IsHDL--~vv~~isdri~VMy~G~iVE~g~~~---~~~~-~p~-HpYTk~Ll~a~p~~~ 217 (268)
T COG4608 166 ISHDL--SVVRYISDRIAVMYLGKIVEIGPTE---EVFS-NPL-HPYTKALLSAVPVPD 217 (268)
T ss_pred EEEEH--HhhhhhcccEEEEecCceeEecCHH---HHhh-CCC-CHHHHHHHHhCCccc
Confidence 99994 4444556778777776555443321 1111 222 346666666544433
No 480
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.10 E-value=4.2e-08 Score=103.41 Aligned_cols=93 Identities=8% Similarity=0.115 Sum_probs=73.4
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||.+++..+|||+++|++|+
T Consensus 143 ~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~ 222 (375)
T PRK09452 143 HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222 (375)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999998 88999999998765 5555544332223488999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhcc
Q 006859 607 QDEESIRHA-LQNLKESFIDG 626 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~~ 626 (628)
+...+.++. +.++.+.|+-+
T Consensus 223 i~~~g~~~~i~~~p~~~~~a~ 243 (375)
T PRK09452 223 IEQDGTPREIYEEPKNLFVAR 243 (375)
T ss_pred EEEEcCHHHHHhCcccHHHHH
Confidence 977665554 45566666544
No 481
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.10 E-value=4.1e-08 Score=102.87 Aligned_cols=94 Identities=11% Similarity=0.110 Sum_probs=72.8
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 135 ~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~ 214 (353)
T PRK10851 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGN 214 (353)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999998 88999999998766 4444443322223488999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhccC
Q 006859 607 QDEESIRHA-LQNLKESFIDGR 627 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~~~ 627 (628)
+...+.++. +.++.+.|+.++
T Consensus 215 i~~~g~~~~i~~~p~~~~~~~~ 236 (353)
T PRK10851 215 IEQAGTPDQVWREPATRFVLEF 236 (353)
T ss_pred EEEEcCHHHHHhCccchHHHHh
Confidence 977665554 345555565443
No 482
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.09 E-value=1.7e-05 Score=84.21 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=66.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch-----------HHHHHHhhcCCccc-cccCcCchHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR-----------VVDRIFTRMGTVDN-LESNSSTFMTE 448 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~-----------~~~~~~~~~~~~~~-~~~~~s~~s~~ 448 (628)
.|+.++|+|+||+|||||+++|++ ...++.+.+. ++...+..-++... +-...+.-+.+
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~---------~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~ 225 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAK---------NAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHL 225 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhc---------cCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHH
Confidence 899999999999999999999999 4444333221 11222222222211 22233445566
Q ss_pred HHHHHHHHHh--------CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 449 MKETAFVMQN--------VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 449 ~~~~~~i~~~--------~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
++.++..+.. ...+-|+++|+++++.++ ..............|-+..+.+|...+.+-+
T Consensus 226 ~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A---~reisl~~~e~p~~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 226 MQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA---RRSVDIAVKELPIGGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH---HHHHHHHhcCCCCCCeeeeeeccchhHHHHh
Confidence 6653333222 256899999999555443 2212222222222366677777765555544
No 483
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.09 E-value=4e-08 Score=102.89 Aligned_cols=91 Identities=10% Similarity=0.131 Sum_probs=70.4
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|.+.+|...+ +.+.+.+.......|++++|||++++..+|||+++|++|+
T Consensus 128 ~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~ 207 (363)
T TIGR01186 128 DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGE 207 (363)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 7899999999999999999 88999999998766 4444443322222389999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHh
Q 006859 607 QDEESIRHA-LQNLKESFI 624 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~ 624 (628)
+...+.++. +.++.+.|+
T Consensus 208 iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 208 IVQVGTPDEILRNPANEYV 226 (363)
T ss_pred EEeeCCHHHHHhCcccHHH
Confidence 876665554 344444444
No 484
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.08 E-value=4.4e-08 Score=102.66 Aligned_cols=92 Identities=11% Similarity=0.147 Sum_probs=71.7
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 133 ~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~ 212 (353)
T TIGR03265 133 GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212 (353)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 8899999999999999998 88999999997765 5555544322223488999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhc
Q 006859 607 QDEESIRHA-LQNLKESFID 625 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~ 625 (628)
+...+.++. +.++...|+.
T Consensus 213 i~~~g~~~~~~~~p~~~~~a 232 (353)
T TIGR03265 213 IEQVGTPQEIYRHPATPFVA 232 (353)
T ss_pred EEEEcCHHHHHhCCCCHHHH
Confidence 987666554 3445444543
No 485
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.07 E-value=2.8e-07 Score=85.32 Aligned_cols=81 Identities=12% Similarity=0.051 Sum_probs=63.1
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS-ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQ 607 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~-~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~ 607 (628)
..+|.|..|++.+|+++.+ ++|+|.+.+|.... .+...-...+..+.++++.+|.|+++..+|||++++++|.+
T Consensus 132 ~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gev 211 (245)
T COG4555 132 GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV 211 (245)
T ss_pred hhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcE
Confidence 7899999999999999988 88999999997655 33322222222233889999999999999999999999998
Q ss_pred CHHHHHH
Q 006859 608 DEESIRH 614 (628)
Q Consensus 608 ~~~~~~~ 614 (628)
...+.++
T Consensus 212 v~~gs~~ 218 (245)
T COG4555 212 VLEGSIE 218 (245)
T ss_pred EEcCCHH
Confidence 6554433
No 486
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.06 E-value=5.8e-08 Score=101.91 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=71.0
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhh-hhhhHHHHHHHHHHHHHHHHHHhhhcc
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKR-MEINCLQYKQIQMLYHAAQRLICLKYS 605 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~l~~g 605 (628)
..||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+..... ..|++++|||++++..+|||+++|++|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 8999999999999999998 88999999998765 555454332221 238899999999999999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHh
Q 006859 606 NQDEESIRHAL-QNLKESFI 624 (628)
Q Consensus 606 ~~~~~~~~~~l-~~~~~~~~ 624 (628)
++...+.++.+ .++.+.|+
T Consensus 216 ~i~~~g~~~~~~~~p~~~~~ 235 (362)
T TIGR03258 216 RLAAHGEPQALYDAPADGFA 235 (362)
T ss_pred EEEEEcCHHHHHhCcCcHHH
Confidence 99777666553 33444443
No 487
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=5.8e-08 Score=96.35 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=71.9
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|.... +.+.+.+.......|+++++|+++.+..+|||+++|++|+
T Consensus 135 ~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 135 AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK 214 (235)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCe
Confidence 7899999999999999988 88999999997765 4444443221112388999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcc
Q 006859 607 QDEESIRHALQNLKESFIDG 626 (628)
Q Consensus 607 ~~~~~~~~~l~~~~~~~~~~ 626 (628)
+...+..+.+....+.|++.
T Consensus 215 i~~~g~~~~~~~~~~~~~~~ 234 (235)
T cd03261 215 IVAEGTPEELRASDDPLVRQ 234 (235)
T ss_pred EEEecCHHHHcCCCChhhhc
Confidence 97766666554445566654
No 488
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.05 E-value=4.2e-07 Score=87.04 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=65.4
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHH-----HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVI-----ETARSITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLK 603 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l-----~~a~~~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~ 603 (628)
..|+.|++.+..+|+++|. ++|+|...+ +...+++.++.+..+. |++++.|||+.++.+|||++||+
T Consensus 148 ~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~---tillIEHdM~~Vm~l~dri~Vl~ 224 (250)
T COG0411 148 GNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGV---TILLIEHDMKLVMGLADRIVVLN 224 (250)
T ss_pred hcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCc---EEEEEEeccHHHhhhccEEEecc
Confidence 7899999988899999998 455555444 4444466666654444 89999999999999999999999
Q ss_pred ccCCCHHHHHHHHHH
Q 006859 604 YSNQDEESIRHALQN 618 (628)
Q Consensus 604 ~g~~~~~~~~~~l~~ 618 (628)
.|++..+|.++...+
T Consensus 225 ~G~~IAeG~P~eV~~ 239 (250)
T COG0411 225 YGEVIAEGTPEEVRN 239 (250)
T ss_pred CCcCcccCCHHHHhc
Confidence 999999888887544
No 489
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.04 E-value=8.7e-05 Score=79.52 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=30.2
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHH
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+++.+ +.+. +|+.++|+|+||+|||||+++|++
T Consensus 151 i~~iD~l-~~i~--------~Gq~~~I~G~sG~GKStLl~~I~~ 185 (440)
T TIGR01026 151 VRSIDGL-LTVG--------KGQRIGIFAGSGVGKSTLLGMIAR 185 (440)
T ss_pred eeeeeec-cccC--------CCcEEEEECCCCCCHHHHHHHHhC
Confidence 4566665 5666 899999999999999999999999
No 490
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.00 E-value=3e-05 Score=69.30 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.8
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+..++|+||+|+||||+++.++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 57899999999999999999999
No 491
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.00 E-value=1.5e-07 Score=99.16 Aligned_cols=92 Identities=8% Similarity=0.094 Sum_probs=71.2
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 163 ~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~ 242 (382)
T TIGR03415 163 GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGR 242 (382)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999998 88999999998766 4444443322223389999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHhc
Q 006859 607 QDEESIRHAL-QNLKESFID 625 (628)
Q Consensus 607 ~~~~~~~~~l-~~~~~~~~~ 625 (628)
+...+..+.+ ..+.+.|++
T Consensus 243 iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 243 IIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEEecCHHHHhhCcchHHHH
Confidence 9777666554 334445554
No 492
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.99 E-value=2.3e-05 Score=91.20 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=65.2
Q ss_pred HhhcCCccc-cccCcCchHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 429 FTRMGTVDN-LESNSSTFMTEMKETAFVMQNV-SE--RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 429 ~~~~~~~~~-~~~~~s~~s~~~~~~~~i~~~~-~~--~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
+..+|+... +.+..+++|+|++|+..+++.+ .. +.++|||||+.|+++.+...+. .++..+.+.|.+|++++|+.
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEECCH
Confidence 456677643 6788999999999999888887 33 4899999999999998877644 45666777799999999996
Q ss_pred hHHHHhhhCcce
Q 006859 505 NLSELATIYPNV 516 (628)
Q Consensus 505 ~l~~~~~~~~~v 516 (628)
+... .++++
T Consensus 550 ~~i~---~aD~v 558 (924)
T TIGR00630 550 ETIR---AADYV 558 (924)
T ss_pred HHHh---hCCEE
Confidence 6544 35554
No 493
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.99 E-value=4.5e-05 Score=71.51 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=86.1
Q ss_pred hcCCcccCCCCCc-----hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-------CCCcEEEEeCCCCCCChH
Q 006859 410 QIGCYVPAHFSTI-----RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-------SERSLIVMDELGRATSSS 477 (628)
Q Consensus 410 ~~g~~v~~~~~~i-----~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-------~~~~l~llDE~~~gt~~~ 477 (628)
++| .+|..++.- .+..+.+.+.+......+...++|+|++|+..+++.+ ..+..++||||++.+|..
T Consensus 97 ~mG-r~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~ 175 (259)
T COG4559 97 QMG-RIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIA 175 (259)
T ss_pred Hhc-ccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchH
Confidence 345 556544333 3566778888888777888888999999877766654 235699999997777765
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCC
Q 006859 478 DGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLP 557 (628)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p 557 (628)
..... ..+...+...|..|+.+.||+++... .++++..+ .+|+++ ..|.++.+-..-.+.+.+|.+
T Consensus 176 HQ~~t-l~laR~la~~g~~V~~VLHDLNLAA~--YaDrivll------~~Grv~-----a~g~p~~vlt~Etl~~vyg~~ 241 (259)
T COG4559 176 HQHHT-LRLARQLAREGGAVLAVLHDLNLAAQ--YADRIVLL------HQGRVI-----ASGSPQDVLTDETLERVYGAD 241 (259)
T ss_pred HHHHH-HHHHHHHHhcCCcEEEEEccchHHHH--hhheeeee------eCCeEe-----ecCCHHHhcCHHHHHHHhCCc
Confidence 54443 33566677789999999999887642 23444333 344443 334444444455555555544
No 494
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.99 E-value=2e-05 Score=91.74 Aligned_cols=85 Identities=18% Similarity=0.151 Sum_probs=66.8
Q ss_pred HHhhcCCccc-cccCcCchHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 428 IFTRMGTVDN-LESNSSTFMTEMKETAFVMQNV-SE--RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 428 ~~~~~~~~~~-~~~~~s~~s~~~~~~~~i~~~~-~~--~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
.+..+|+... +++...++|+|++|+..+++.+ .. +.++|||||+.|+++.+...+. .++..+.+.|.||++++|+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCEEEEEeCC
Confidence 4667788654 6889999999999999888887 34 4899999999999998877644 4556677789999999999
Q ss_pred hhHHHHhhhCcce
Q 006859 504 ENLSELATIYPNV 516 (628)
Q Consensus 504 ~~l~~~~~~~~~v 516 (628)
.+... .+++|
T Consensus 551 ~~~i~---~aD~v 560 (943)
T PRK00349 551 EDTIR---AADYI 560 (943)
T ss_pred HHHHH---hCCEE
Confidence 66443 25555
No 495
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.99 E-value=0.00021 Score=71.61 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=58.5
Q ss_pred cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH--HhcCCcccCCCCCchHHHHHHhh---cCCccc
Q 006859 363 ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL--AQIGCYVPAHFSTIRVVDRIFTR---MGTVDN 437 (628)
Q Consensus 363 ~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~--~~~g~~v~~~~~~i~~~~~~~~~---~~~~~~ 437 (628)
++++++..+.+..+ +..+|++++++||||+||||+++.+++.... ...| ++..+...+....++-.. ++..-.
T Consensus 57 v~~~l~~~~~~~~~-~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~-~i~~D~~ri~~~~ql~~~~~~~~~~~~ 134 (270)
T PRK06731 57 ILEDMSSHFNTENV-FEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG-FITTDHSRIGTVQQLQDYVKTIGFEVI 134 (270)
T ss_pred HhcccEEeeCCccc-ccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE-EEecCCCCHHHHHHHHHHhhhcCceEE
Confidence 45555555543332 3336799999999999999999999985432 1233 555555444444444332 232111
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 006859 438 LESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT 474 (628)
Q Consensus 438 ~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt 474 (628)
.... ...+.+...-+......+++++|-+|+.-
T Consensus 135 ~~~~----~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 135 AVRD----EAAMTRALTYFKEEARVDYILIDTAGKNY 167 (270)
T ss_pred ecCC----HHHHHHHHHHHHhcCCCCEEEEECCCCCc
Confidence 1011 11112111112222467999999998764
No 496
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.99 E-value=1.2e-07 Score=100.07 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=71.4
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+||++++|++|+
T Consensus 132 ~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~ 211 (369)
T PRK11000 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211 (369)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 7899999999999999998 88999999998765 4444443322223388999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHhcc
Q 006859 607 QDEESIRHAL-QNLKESFIDG 626 (628)
Q Consensus 607 ~~~~~~~~~l-~~~~~~~~~~ 626 (628)
+...+.++.+ ..+.+.|+.+
T Consensus 212 i~~~g~~~~i~~~p~~~~~~~ 232 (369)
T PRK11000 212 VAQVGKPLELYHYPANRFVAG 232 (369)
T ss_pred EEEEcCHHHHHhCcccHHHHH
Confidence 8766655543 4455555443
No 497
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.97 E-value=1.1e-07 Score=100.47 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=71.1
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++++|++++. ++|+|.+.+|...+ +.+.+.+.......|++++|||++++..+|||+++|++|+
T Consensus 148 ~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~ 227 (377)
T PRK11607 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227 (377)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCE
Confidence 7899999999999999998 88999999998765 4344433222223488999999999999999999999999
Q ss_pred CCHHHHHHH-HHHHHHHHhc
Q 006859 607 QDEESIRHA-LQNLKESFID 625 (628)
Q Consensus 607 ~~~~~~~~~-l~~~~~~~~~ 625 (628)
+...+.++. +.++.+.|+.
T Consensus 228 i~~~g~~~~~~~~p~~~~~a 247 (377)
T PRK11607 228 FVQIGEPEEIYEHPTTRYSA 247 (377)
T ss_pred EEEEcCHHHHHhCCccHHHH
Confidence 977766554 3445555543
No 498
>PRK09183 transposase/IS protein; Provisional
Probab=97.96 E-value=2.4e-05 Score=78.52 Aligned_cols=104 Identities=15% Similarity=0.239 Sum_probs=54.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh-C
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN-V 459 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~-~ 459 (628)
.|+.++|+||+|+|||+|...|+..... -|.-|- +.-...++..+.... .......+++. .
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~-----~~~~~~l~~~l~~a~-----------~~~~~~~~~~~~~ 162 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVR-----FTTAADLLLQLSTAQ-----------RQGRYKTTLQRGV 162 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE-----EEeHHHHHHHHHHHH-----------HCCcHHHHHHHHh
Confidence 7899999999999999999999763322 221110 000111221111000 00012223322 4
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
..++++++||++......+.......+++...+.+ .++++|+.
T Consensus 163 ~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 163 MAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred cCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 67899999999764333333333344554444444 46666665
No 499
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.95 E-value=1.3e-05 Score=83.93 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=57.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCC-CCCchHHHHHHhh-c-CCcc-----ccccCcCchHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH-FSTIRVVDRIFTR-M-GTVD-----NLESNSSTFMTEMKET 452 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~-~~~i~~~~~~~~~-~-~~~~-----~~~~~~s~~s~~~~~~ 452 (628)
++..++|+||+||||||+++.+.+ +++.. .+.+-.+..-... . +... .......+|... +
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~---------~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~---l 188 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMID---------YINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANA---L 188 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH---------hhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHH---H
Confidence 578899999999999999999988 55432 2222111100000 0 0000 000001122211 1
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 453 ~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
..+++ .+|+++++||+ .++... ...++ ....|..++.++|-.....
T Consensus 189 ~~~lr--~~pd~i~vgEi---rd~~~~----~~~l~-aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 189 RAALR--EDPDVILIGEM---RDLETV----ELALT-AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred HHhhc--cCCCEEEEeCC---CCHHHH----HHHHH-HHHcCCcEEEEEcCCCHHH
Confidence 22222 78999999999 554322 22233 2456899999999855443
No 500
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.95 E-value=9.3e-05 Score=73.29 Aligned_cols=124 Identities=12% Similarity=0.089 Sum_probs=65.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHH-HHhcCCcccCCCCCchHHHHHHhhcCCc--ccccc-----------CcCchH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVI-LAQIGCYVPAHFSTIRVVDRIFTRMGTV--DNLES-----------NSSTFM 446 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~-~~~~g~~v~~~~~~i~~~~~~~~~~~~~--~~~~~-----------~~s~~s 446 (628)
.|.++.|+||+|+|||||..+++--.+ ...-++|+..+...-.+. +.+..+|.. +.+.. ..+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~-~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~ 102 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYL-KQMESVKIDISDFFLWGYLRIFPLNTEGFEWNS 102 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH-HHHHHCCCChhHHHhCCCceEEeccccccccCc
Confidence 899999999999999999999864221 122233444433222222 222333321 11111 111112
Q ss_pred HHHHHHHHHH-HhC--CCCcEEEEeCCCCCCChHHHHHHHHH--HHHHHHhCCcEEEEEcCChh
Q 006859 447 TEMKETAFVM-QNV--SERSLIVMDELGRATSSSDGFAIAWS--CCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 447 ~~~~~~~~i~-~~~--~~~~l~llDE~~~gt~~~~~~~~~~~--~~~~l~~~~~~vi~~tH~~~ 505 (628)
.++.++...+ ... .+++++++|||+...+..+...+... .+..+.+.+.++++++|...
T Consensus 103 ~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 103 TLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 2333333332 222 47899999999743333222222221 23334566899999999754
Done!