Query 006859
Match_columns 628
No_of_seqs 443 out of 4152
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_A DNA mismatch repair pro 100.0 7.6E-82 2.6E-86 724.3 55.3 589 1-623 300-915 (934)
2 1wb9_A DNA mismatch repair pro 100.0 7.6E-80 2.6E-84 700.8 52.8 530 1-573 267-798 (800)
3 3thx_B DNA mismatch repair pro 100.0 2E-78 7E-83 693.7 48.9 533 1-574 319-880 (918)
4 2o8b_B DNA mismatch repair pro 100.0 1.6E-77 5.5E-82 697.3 50.1 558 1-575 395-989 (1022)
5 1ewq_A DNA mismatch repair pro 100.0 1.8E-75 6.2E-80 661.0 52.7 514 1-572 250-763 (765)
6 4g1u_C Hemin import ATP-bindin 99.9 4.3E-23 1.5E-27 206.3 15.2 165 350-532 13-228 (266)
7 3fvq_A Fe(3+) IONS import ATP- 99.9 6.8E-23 2.3E-27 211.5 16.4 164 352-532 8-219 (359)
8 3j16_B RLI1P; ribosome recycli 99.9 1.3E-24 4.6E-29 240.5 3.2 136 353-507 82-284 (608)
9 2pcj_A ABC transporter, lipopr 99.9 1.8E-22 6E-27 197.1 16.8 162 352-532 8-219 (224)
10 1vpl_A ABC transporter, ATP-bi 99.9 1.4E-22 4.7E-27 201.3 15.8 169 345-532 13-226 (256)
11 3tui_C Methionine import ATP-b 99.9 1.4E-22 4.8E-27 209.2 16.2 165 352-534 28-246 (366)
12 2olj_A Amino acid ABC transpor 99.9 1.7E-22 5.8E-27 201.4 16.0 164 351-532 27-239 (263)
13 3tif_A Uncharacterized ABC tra 99.9 8.9E-23 3E-27 200.6 13.6 163 353-534 6-227 (235)
14 3rlf_A Maltose/maltodextrin im 99.9 1.6E-22 5.3E-27 210.2 15.2 164 352-532 7-214 (381)
15 3gfo_A Cobalt import ATP-bindi 99.9 1.3E-22 4.5E-27 203.3 13.9 164 351-532 10-224 (275)
16 1ji0_A ABC transporter; ATP bi 99.9 2.5E-22 8.6E-27 198.1 13.9 163 352-532 10-219 (240)
17 1b0u_A Histidine permease; ABC 99.9 2.7E-22 9.3E-27 200.3 14.3 164 351-532 9-233 (262)
18 1z47_A CYSA, putative ABC-tran 99.9 5.3E-22 1.8E-26 205.1 16.3 163 352-531 18-225 (355)
19 2yyz_A Sugar ABC transporter, 99.9 5.8E-22 2E-26 205.3 15.8 164 352-532 7-214 (359)
20 1g6h_A High-affinity branched- 99.9 4.1E-22 1.4E-26 198.7 14.0 164 351-532 10-233 (257)
21 2it1_A 362AA long hypothetical 99.9 6.8E-22 2.3E-26 205.0 14.6 163 352-531 7-213 (362)
22 2nq2_C Hypothetical ABC transp 99.9 1.6E-21 5.5E-26 193.6 15.8 153 352-516 8-199 (253)
23 3ozx_A RNAse L inhibitor; ATP 99.9 7.1E-23 2.4E-27 224.2 6.5 117 380-507 23-200 (538)
24 3d31_A Sulfate/molybdate ABC t 99.9 1.9E-21 6.6E-26 200.7 15.6 152 353-516 6-198 (348)
25 1v43_A Sugar-binding transport 99.9 1.1E-21 3.7E-26 204.2 13.6 163 352-531 15-221 (372)
26 2onk_A Molybdate/tungstate ABC 99.9 1.7E-21 5.8E-26 191.7 14.2 159 353-532 6-207 (240)
27 1oxx_K GLCV, glucose, ABC tran 99.9 1.6E-21 5.5E-26 202.1 14.1 163 352-531 7-220 (353)
28 1g29_1 MALK, maltose transport 99.9 2.8E-21 9.4E-26 201.6 15.7 164 352-532 7-220 (372)
29 2ihy_A ABC transporter, ATP-bi 99.9 2.6E-21 8.8E-26 194.7 12.9 164 351-532 24-243 (279)
30 2ff7_A Alpha-hemolysin translo 99.8 3E-21 1E-25 191.0 13.0 160 353-532 12-223 (247)
31 2yz2_A Putative ABC transporte 99.8 4.3E-21 1.5E-25 192.2 13.8 162 353-532 7-218 (266)
32 2d2e_A SUFC protein; ABC-ATPas 99.8 2.4E-21 8.1E-26 192.3 11.7 145 352-506 7-205 (250)
33 2ixe_A Antigen peptide transpo 99.8 3.7E-21 1.3E-25 193.0 13.2 161 352-531 20-235 (271)
34 3ux8_A Excinuclease ABC, A sub 99.8 4.8E-23 1.6E-27 233.6 -2.8 80 429-509 186-269 (670)
35 1sgw_A Putative ABC transporte 99.8 7.4E-21 2.5E-25 183.5 11.3 143 352-506 14-195 (214)
36 2zu0_C Probable ATP-dependent 99.8 1E-20 3.5E-25 189.5 12.5 163 352-532 24-245 (267)
37 2qi9_C Vitamin B12 import ATP- 99.8 2E-20 7E-25 184.9 13.9 153 362-532 14-213 (249)
38 1mv5_A LMRA, multidrug resista 99.8 1E-20 3.6E-25 187.0 11.4 150 353-516 6-207 (243)
39 2pze_A Cystic fibrosis transme 99.8 9E-21 3.1E-25 185.6 10.8 162 352-532 10-209 (229)
40 3nh6_A ATP-binding cassette SU 99.8 3.1E-20 1E-24 188.5 12.7 160 353-532 58-268 (306)
41 2cbz_A Multidrug resistance-as 99.8 1.3E-20 4.5E-25 185.4 8.6 161 352-531 7-207 (237)
42 2ghi_A Transport protein; mult 99.8 3.4E-20 1.2E-24 184.9 11.5 160 352-531 21-232 (260)
43 3gd7_A Fusion complex of cysti 99.8 3.4E-20 1.2E-24 194.1 9.2 160 352-531 23-232 (390)
44 1yqt_A RNAse L inhibitor; ATP- 99.8 8.5E-19 2.9E-23 192.5 17.0 145 352-507 25-221 (538)
45 2pjz_A Hypothetical protein ST 99.8 3.8E-19 1.3E-23 177.1 11.0 140 353-506 6-187 (263)
46 2bbs_A Cystic fibrosis transme 99.8 2.8E-19 9.4E-24 180.6 9.2 153 360-531 50-237 (290)
47 3bk7_A ABC transporter ATP-bin 99.8 2.2E-18 7.5E-23 191.2 16.4 145 352-507 95-291 (607)
48 3ozx_A RNAse L inhibitor; ATP 99.8 3.1E-18 1.1E-22 187.5 15.0 142 354-516 275-456 (538)
49 3b5x_A Lipid A export ATP-bind 99.8 2E-17 6.8E-22 184.3 20.1 160 352-531 345-557 (582)
50 3b60_A Lipid A export ATP-bind 99.7 1.3E-17 4.3E-22 185.9 17.7 159 353-531 346-557 (582)
51 3bk7_A ABC transporter ATP-bin 99.7 9.6E-18 3.3E-22 186.0 16.6 151 353-516 362-542 (607)
52 3qf4_A ABC transporter, ATP-bi 99.7 2.6E-17 8.9E-22 183.2 18.9 159 353-531 346-556 (587)
53 1yqt_A RNAse L inhibitor; ATP- 99.7 1.1E-17 3.7E-22 183.7 15.3 151 353-516 292-472 (538)
54 3qf4_B Uncharacterized ABC tra 99.7 2E-17 6.7E-22 184.7 16.8 150 353-516 359-559 (598)
55 3j16_B RLI1P; ribosome recycli 99.7 1.3E-17 4.5E-22 184.5 13.2 156 354-516 352-538 (608)
56 2yl4_A ATP-binding cassette SU 99.7 1.1E-16 3.8E-21 178.7 20.4 160 353-532 346-561 (595)
57 4a82_A Cystic fibrosis transme 99.7 5.6E-17 1.9E-21 180.4 16.7 160 353-532 344-555 (578)
58 2iw3_A Elongation factor 3A; a 99.7 9.2E-17 3.1E-21 184.2 15.5 149 353-516 440-615 (986)
59 2iw3_A Elongation factor 3A; a 99.7 3.4E-17 1.2E-21 187.8 10.2 85 426-516 881-968 (986)
60 3ux8_A Excinuclease ABC, A sub 99.6 3.5E-15 1.2E-19 169.0 16.2 84 429-516 527-615 (670)
61 4gp7_A Metallophosphoesterase; 99.6 1.3E-15 4.5E-20 142.1 9.5 118 381-508 8-163 (171)
62 3g5u_A MCG1178, multidrug resi 99.6 3.7E-15 1.3E-19 179.4 11.9 159 353-531 392-603 (1284)
63 3g5u_A MCG1178, multidrug resi 99.6 3.7E-15 1.3E-19 179.4 11.5 160 353-532 1035-1249(1284)
64 2r6f_A Excinuclease ABC subuni 99.5 6.5E-14 2.2E-18 159.4 15.8 86 427-516 827-917 (972)
65 4f4c_A Multidrug resistance pr 99.5 8.1E-14 2.8E-18 168.2 17.5 161 353-533 420-633 (1321)
66 2ygr_A Uvrabc system protein A 99.5 9.8E-14 3.3E-18 158.6 16.8 86 427-516 845-935 (993)
67 3pih_A Uvrabc system protein A 99.5 2.3E-13 7.7E-18 156.2 18.3 85 428-516 788-877 (916)
68 2vf7_A UVRA2, excinuclease ABC 99.5 1.2E-13 4.2E-18 157.1 15.7 86 427-516 712-802 (842)
69 4f4c_A Multidrug resistance pr 99.5 5.4E-14 1.8E-18 169.8 13.1 157 353-531 1081-1294(1321)
70 3b85_A Phosphate starvation-in 99.5 3.2E-15 1.1E-19 143.6 -0.7 129 357-508 9-162 (208)
71 4aby_A DNA repair protein RECN 99.5 1E-13 3.6E-18 148.2 10.4 113 445-568 296-413 (415)
72 1ye8_A Protein THEP1, hypothet 99.4 6.5E-14 2.2E-18 131.1 6.3 120 384-508 2-147 (178)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 4.3E-13 1.5E-17 140.3 11.4 74 439-516 274-354 (365)
74 2npi_A Protein CLP1; CLP1-PCF1 99.3 1.1E-13 3.8E-18 148.4 0.1 118 380-505 136-299 (460)
75 1tq4_A IIGP1, interferon-induc 99.2 5.4E-13 1.8E-17 140.5 -1.1 141 361-512 36-246 (413)
76 2ehv_A Hypothetical protein PH 99.2 5.7E-11 1.9E-15 117.4 12.7 125 381-507 29-185 (251)
77 2pt7_A CAG-ALFA; ATPase, prote 99.2 1.5E-12 5.1E-17 134.1 1.1 124 362-513 159-284 (330)
78 1e69_A Chromosome segregation 99.2 1.1E-10 3.9E-15 120.0 14.1 71 440-512 215-290 (322)
79 1znw_A Guanylate kinase, GMP k 99.2 3.7E-13 1.3E-17 129.6 -5.7 26 381-406 19-44 (207)
80 1cr0_A DNA primase/helicase; R 99.1 1.9E-10 6.4E-15 117.0 12.3 39 361-407 22-60 (296)
81 2eyu_A Twitching motility prot 99.1 1.6E-11 5.6E-16 122.0 4.0 110 381-512 24-141 (261)
82 3qkt_A DNA double-strand break 99.1 3E-10 1E-14 117.7 11.1 74 439-516 243-323 (339)
83 2w0m_A SSO2452; RECA, SSPF, un 99.1 8.1E-10 2.8E-14 107.6 13.4 134 361-504 9-168 (235)
84 3pih_A Uvrabc system protein A 99.1 1.5E-12 5.1E-17 149.4 -8.6 81 427-508 446-530 (916)
85 4a74_A DNA repair and recombin 99.0 8.9E-10 3.1E-14 107.2 10.3 26 381-406 24-49 (231)
86 3b9q_A Chloroplast SRP recepto 99.0 1.4E-10 4.7E-15 117.8 4.5 111 381-503 99-256 (302)
87 1nlf_A Regulatory protein REPA 99.0 7.4E-10 2.5E-14 111.5 9.7 124 381-506 29-183 (279)
88 2obl_A ESCN; ATPase, hydrolase 99.0 1.4E-10 4.7E-15 120.0 3.5 52 346-406 43-95 (347)
89 3ec2_A DNA replication protein 99.0 1.2E-10 4E-15 109.2 2.5 106 381-504 37-143 (180)
90 1tf7_A KAIC; homohexamer, hexa 99.0 1.2E-09 4E-14 120.1 9.9 120 381-504 280-417 (525)
91 2vf7_A UVRA2, excinuclease ABC 98.9 9.4E-09 3.2E-13 117.1 17.0 84 429-516 363-450 (842)
92 3jvv_A Twitching mobility prot 98.9 7.3E-10 2.5E-14 114.8 7.2 135 354-512 94-239 (356)
93 2og2_A Putative signal recogni 98.9 4.3E-10 1.5E-14 116.3 5.2 111 381-503 156-313 (359)
94 1tf7_A KAIC; homohexamer, hexa 98.9 2.5E-09 8.5E-14 117.5 10.9 142 354-506 18-187 (525)
95 3sop_A Neuronal-specific septi 98.9 7E-11 2.4E-15 118.0 -2.0 37 462-504 114-150 (270)
96 2jeo_A Uridine-cytidine kinase 98.9 2E-10 6.8E-15 113.4 0.6 41 358-406 9-49 (245)
97 1z6g_A Guanylate kinase; struc 98.9 5.5E-11 1.9E-15 115.2 -3.6 38 361-406 10-47 (218)
98 2i3b_A HCR-ntpase, human cance 98.8 1.8E-10 6.1E-15 108.6 -1.4 26 382-407 1-26 (189)
99 2cvh_A DNA repair and recombin 98.8 1.3E-08 4.5E-13 98.1 11.1 122 381-505 19-157 (220)
100 2dpy_A FLII, flagellum-specifi 98.8 1.5E-09 5E-14 115.8 4.3 145 347-512 130-324 (438)
101 2kjq_A DNAA-related protein; s 98.8 7.4E-09 2.5E-13 93.6 7.8 88 381-503 35-124 (149)
102 2v9p_A Replication protein E1; 98.8 3.2E-10 1.1E-14 114.5 -2.1 108 352-478 105-228 (305)
103 1pzn_A RAD51, DNA repair and r 98.8 1.4E-08 4.7E-13 105.4 9.9 136 362-505 118-287 (349)
104 3aez_A Pantothenate kinase; tr 98.8 3E-10 1E-14 115.8 -3.3 93 381-475 89-208 (312)
105 1htw_A HI0065; nucleotide-bind 98.7 2.5E-09 8.5E-14 97.6 1.2 53 354-424 13-65 (158)
106 1n0w_A DNA repair protein RAD5 98.7 4.3E-08 1.5E-12 96.1 9.6 123 381-504 23-174 (243)
107 2ewv_A Twitching motility prot 98.7 1.2E-08 4.1E-13 106.7 4.7 110 380-512 134-252 (372)
108 1s96_A Guanylate kinase, GMP k 98.6 3.4E-08 1.2E-12 95.3 7.2 25 381-405 15-39 (219)
109 3asz_A Uridine kinase; cytidin 98.6 8.1E-11 2.8E-15 113.3 -11.5 25 381-405 5-29 (211)
110 1lw7_A Transcriptional regulat 98.6 2E-08 7E-13 105.0 4.8 25 381-405 167-193 (365)
111 2o5v_A DNA replication and rep 98.6 2.6E-07 9.1E-12 95.5 12.5 56 444-503 265-330 (359)
112 2gza_A Type IV secretion syste 98.5 1.8E-08 6.3E-13 104.9 2.1 120 365-512 166-295 (361)
113 2qag_B Septin-6, protein NEDD5 98.5 3.9E-08 1.3E-12 103.4 3.9 43 355-406 22-66 (427)
114 1rj9_A FTSY, signal recognitio 98.5 1.8E-07 6E-12 94.8 6.9 26 381-406 101-126 (304)
115 3szr_A Interferon-induced GTP- 98.4 5.2E-08 1.8E-12 108.5 2.4 45 461-505 146-197 (608)
116 2qag_C Septin-7; cell cycle, c 98.4 8.2E-08 2.8E-12 101.4 2.1 39 352-404 15-53 (418)
117 2dr3_A UPF0273 protein PH0284; 98.4 3.1E-06 1.1E-10 82.8 13.3 123 381-505 22-174 (247)
118 2qnr_A Septin-2, protein NEDD5 98.4 8E-07 2.7E-11 90.1 8.8 39 353-405 3-41 (301)
119 1f2t_B RAD50 ABC-ATPase; DNA d 98.3 5.1E-07 1.7E-11 81.1 6.5 75 438-516 51-132 (148)
120 3lda_A DNA repair protein RAD5 98.3 9.9E-07 3.4E-11 92.6 9.2 124 381-504 177-328 (400)
121 3tui_C Methionine import ATP-b 98.3 4.9E-10 1.7E-14 115.6 -15.7 82 534-615 162-250 (366)
122 2bdt_A BH3686; alpha-beta prot 98.3 3.5E-07 1.2E-11 85.9 4.6 35 581-617 148-183 (189)
123 3euj_A Chromosome partition pr 98.3 3.1E-07 1.1E-11 98.2 4.3 55 356-428 12-66 (483)
124 3rlf_A Maltose/maltodextrin im 98.3 1.2E-09 4.2E-14 113.4 -13.9 92 534-625 132-231 (381)
125 3e70_C DPA, signal recognition 98.3 2.2E-07 7.4E-12 95.1 2.4 26 381-406 128-153 (328)
126 2px0_A Flagellar biosynthesis 98.2 7.9E-06 2.7E-10 82.4 13.3 123 381-514 104-237 (296)
127 3fvq_A Fe(3+) IONS import ATP- 98.2 3.2E-09 1.1E-13 109.4 -13.2 83 534-616 137-226 (359)
128 2yhs_A FTSY, cell division pro 98.1 1.3E-05 4.4E-10 85.5 12.3 26 381-406 292-317 (503)
129 1pui_A ENGB, probable GTP-bind 98.1 1.2E-06 4E-11 83.6 3.7 43 353-406 8-50 (210)
130 2r6f_A Excinuclease ABC subuni 98.1 5.7E-06 2E-10 94.6 9.8 85 428-516 487-575 (972)
131 2qm8_A GTPase/ATPase; G protei 98.1 2.7E-07 9.3E-12 95.1 -1.7 43 354-404 35-77 (337)
132 3lnc_A Guanylate kinase, GMP k 98.1 1.4E-06 4.8E-11 84.7 3.5 33 364-404 17-50 (231)
133 4g1u_C Hemin import ATP-bindin 98.1 9.3E-09 3.2E-13 102.3 -12.3 82 534-615 140-234 (266)
134 1sxj_E Activator 1 40 kDa subu 98.1 5.5E-06 1.9E-10 85.9 7.9 21 384-404 38-58 (354)
135 2ygr_A Uvrabc system protein A 98.1 8.2E-06 2.8E-10 93.7 9.8 84 429-516 505-592 (993)
136 1v43_A Sugar-binding transport 98.1 1.7E-08 5.8E-13 104.9 -11.3 82 534-615 140-228 (372)
137 3tr0_A Guanylate kinase, GMP k 98.0 1.8E-06 6.3E-11 82.0 3.6 25 381-405 6-30 (205)
138 2zr9_A Protein RECA, recombina 98.0 3.5E-05 1.2E-09 79.5 12.7 120 381-504 60-198 (349)
139 1ixz_A ATP-dependent metallopr 98.0 8E-06 2.8E-10 80.5 7.5 77 362-470 39-117 (254)
140 1g29_1 MALK, maltose transport 98.0 1.7E-08 5.7E-13 105.1 -12.5 82 534-615 138-226 (372)
141 3a00_A Guanylate kinase, GMP k 98.0 2.8E-06 9.7E-11 79.5 3.8 23 382-404 1-23 (186)
142 1z47_A CYSA, putative ABC-tran 98.0 1.3E-08 4.6E-13 104.9 -13.4 82 534-615 144-232 (355)
143 2yyz_A Sugar ABC transporter, 98.0 1.6E-08 5.4E-13 104.6 -13.2 82 534-615 132-220 (359)
144 2it1_A 362AA long hypothetical 98.0 1.4E-08 4.8E-13 105.1 -13.7 82 534-615 132-220 (362)
145 1sq5_A Pantothenate kinase; P- 98.0 1.6E-06 5.5E-11 88.2 1.7 35 381-424 79-115 (308)
146 2x8a_A Nuclear valosin-contain 98.0 1.8E-06 6.3E-11 86.2 1.8 114 363-508 35-160 (274)
147 2oap_1 GSPE-2, type II secreti 98.0 1.1E-06 3.9E-11 95.2 0.2 37 380-425 258-294 (511)
148 1lvg_A Guanylate kinase, GMP k 97.9 3.6E-06 1.2E-10 79.7 3.6 25 381-405 3-27 (198)
149 3d31_A Sulfate/molybdate ABC t 97.9 1.7E-08 5.7E-13 104.0 -13.9 82 534-615 126-214 (348)
150 1oxx_K GLCV, glucose, ABC tran 97.9 1.5E-08 5.2E-13 104.7 -14.5 82 534-615 139-227 (353)
151 3c8u_A Fructokinase; YP_612366 97.9 4.8E-06 1.6E-10 79.5 3.8 25 381-405 21-45 (208)
152 1b0u_A Histidine permease; ABC 97.9 3.3E-08 1.1E-12 98.2 -12.1 80 534-614 152-238 (262)
153 3gfo_A Cobalt import ATP-bindi 97.9 7.3E-09 2.5E-13 103.4 -16.9 81 534-614 142-229 (275)
154 2onk_A Molybdate/tungstate ABC 97.9 2.2E-08 7.6E-13 98.0 -13.5 82 534-615 125-213 (240)
155 1qhl_A Protein (cell division 97.9 9.8E-07 3.3E-11 85.2 -1.8 43 375-428 22-64 (227)
156 3nwj_A ATSK2; P loop, shikimat 97.9 2.4E-06 8.2E-11 83.9 0.9 47 350-404 19-70 (250)
157 1ls1_A Signal recognition part 97.9 3.7E-05 1.3E-09 77.5 9.7 30 376-406 93-122 (295)
158 1vma_A Cell division protein F 97.9 4.6E-05 1.6E-09 77.0 10.1 26 381-406 103-128 (306)
159 2olj_A Amino acid ABC transpor 97.9 3.5E-08 1.2E-12 97.9 -12.9 81 534-615 158-245 (263)
160 1p9r_A General secretion pathw 97.8 5.9E-06 2E-10 87.2 3.4 38 379-425 164-201 (418)
161 1iy2_A ATP-dependent metallopr 97.8 8.3E-06 2.8E-10 81.6 4.1 22 381-404 74-95 (278)
162 3hr8_A Protein RECA; alpha and 97.8 0.00021 7.2E-09 73.5 14.1 119 381-503 60-197 (356)
163 1odf_A YGR205W, hypothetical 3 97.8 7.2E-06 2.4E-10 82.4 2.9 26 381-406 30-55 (290)
164 1zp6_A Hypothetical protein AT 97.8 8.2E-06 2.8E-10 76.5 3.1 24 381-404 8-31 (191)
165 1fnn_A CDC6P, cell division co 97.7 0.00015 5.1E-09 75.8 11.9 117 384-507 46-172 (389)
166 1ji0_A ABC transporter; ATP bi 97.7 7.9E-08 2.7E-12 94.2 -12.5 80 534-614 138-224 (240)
167 3kta_A Chromosome segregation 97.7 2.2E-05 7.6E-10 72.9 4.9 23 381-404 26-48 (182)
168 4ad8_A DNA repair protein RECN 97.7 5.4E-05 1.9E-09 82.7 8.5 69 440-510 392-464 (517)
169 1kgd_A CASK, peripheral plasma 97.7 1.6E-05 5.5E-10 73.9 3.6 24 381-404 4-27 (180)
170 2nq2_C Hypothetical ABC transp 97.6 1.1E-07 3.9E-12 93.7 -12.8 80 534-614 127-213 (253)
171 1udx_A The GTP-binding protein 97.6 4.3E-06 1.5E-10 88.2 -1.6 124 381-510 156-316 (416)
172 4eun_A Thermoresistant glucoki 97.6 2.4E-05 8.2E-10 74.1 3.6 25 381-405 28-52 (200)
173 3uie_A Adenylyl-sulfate kinase 97.6 1.5E-05 5.2E-10 75.4 2.2 24 381-404 24-47 (200)
174 2r6a_A DNAB helicase, replicat 97.6 0.00022 7.6E-09 76.5 11.4 39 362-408 191-229 (454)
175 2z4s_A Chromosomal replication 97.6 9.1E-05 3.1E-09 79.1 8.0 103 382-503 130-236 (440)
176 3tif_A Uncharacterized ABC tra 97.6 2.2E-07 7.5E-12 90.7 -11.6 76 534-610 144-226 (235)
177 3tau_A Guanylate kinase, GMP k 97.6 3.7E-05 1.3E-09 73.3 4.1 25 380-404 6-30 (208)
178 3nh6_A ATP-binding cassette SU 97.6 1.9E-07 6.5E-12 94.5 -12.6 82 534-618 189-277 (306)
179 3kta_B Chromosome segregation 97.6 0.00015 5E-09 66.8 7.9 68 440-509 60-132 (173)
180 2bbw_A Adenylate kinase 4, AK4 97.6 1.8E-05 6.1E-10 77.6 1.8 34 381-423 26-62 (246)
181 2rcn_A Probable GTPase ENGC; Y 97.6 2.2E-05 7.6E-10 80.8 2.5 36 381-425 214-250 (358)
182 1u0l_A Probable GTPase ENGC; p 97.6 2.7E-05 9.2E-10 78.8 3.0 35 381-424 168-202 (301)
183 2j41_A Guanylate kinase; GMP, 97.6 3.6E-05 1.2E-09 73.0 3.6 24 381-404 5-28 (207)
184 1vpl_A ABC transporter, ATP-bi 97.6 9.9E-08 3.4E-12 94.3 -14.8 80 534-614 145-231 (256)
185 3vaa_A Shikimate kinase, SK; s 97.5 3.7E-05 1.3E-09 72.6 3.6 36 361-404 12-47 (199)
186 2ce7_A Cell division protein F 97.5 0.0001 3.6E-09 78.9 7.4 20 385-404 52-71 (476)
187 1in4_A RUVB, holliday junction 97.5 1.8E-05 6E-10 81.5 1.2 50 354-404 24-73 (334)
188 1g6h_A High-affinity branched- 97.5 5.7E-08 1.9E-12 96.2 -17.1 77 534-611 152-235 (257)
189 2ihy_A ABC transporter, ATP-bi 97.5 1E-07 3.6E-12 95.3 -15.4 80 534-614 160-248 (279)
190 1zu4_A FTSY; GTPase, signal re 97.5 0.00029 1E-08 71.6 9.3 25 381-405 104-128 (320)
191 2ixe_A Antigen peptide transpo 97.5 1.7E-07 5.8E-12 93.5 -14.5 82 534-616 155-243 (271)
192 2qby_A CDC6 homolog 1, cell di 97.5 0.00014 4.9E-09 75.7 7.0 123 381-506 44-175 (386)
193 4e22_A Cytidylate kinase; P-lo 97.5 2.5E-05 8.7E-10 76.8 1.1 23 381-403 26-48 (252)
194 2qi9_C Vitamin B12 import ATP- 97.5 4.3E-07 1.5E-11 89.2 -11.7 80 534-614 125-218 (249)
195 2yz2_A Putative ABC transporte 97.4 1.1E-07 3.6E-12 94.7 -16.5 78 534-612 137-221 (266)
196 1v5w_A DMC1, meiotic recombina 97.4 0.00044 1.5E-08 71.2 10.2 124 381-504 121-274 (343)
197 2pcj_A ABC transporter, lipopr 97.4 2.6E-07 8.9E-12 89.5 -13.7 74 534-609 139-219 (224)
198 1kag_A SKI, shikimate kinase I 97.4 6.7E-05 2.3E-09 68.9 3.3 24 381-404 3-26 (173)
199 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00018 6E-09 77.6 7.0 22 381-404 65-86 (499)
200 1rz3_A Hypothetical protein rb 97.4 6E-05 2.1E-09 71.3 3.0 24 381-404 21-44 (201)
201 2d2e_A SUFC protein; ABC-ATPas 97.4 2.8E-07 9.5E-12 90.9 -13.8 80 534-614 141-229 (250)
202 1knq_A Gluconate kinase; ALFA/ 97.4 7.7E-05 2.6E-09 68.7 3.6 25 381-405 7-31 (175)
203 1t9h_A YLOQ, probable GTPase E 97.4 2.2E-05 7.6E-10 79.2 -0.3 35 381-424 172-206 (307)
204 1nij_A Hypothetical protein YJ 97.4 8.6E-05 2.9E-09 75.7 3.9 22 383-404 5-26 (318)
205 1l8q_A Chromosomal replication 97.4 0.0003 1E-08 71.7 8.0 24 381-404 36-59 (324)
206 3tqc_A Pantothenate kinase; bi 97.4 3.2E-05 1.1E-09 78.5 0.5 21 384-404 94-114 (321)
207 2vp4_A Deoxynucleoside kinase; 97.3 5.8E-05 2E-09 73.1 2.1 25 381-405 19-43 (230)
208 2w58_A DNAI, primosome compone 97.3 6.5E-05 2.2E-09 71.0 2.3 22 383-404 55-76 (202)
209 3gd7_A Fusion complex of cysti 97.3 2.4E-07 8.3E-12 96.8 -16.0 88 536-626 156-251 (390)
210 1svm_A Large T antigen; AAA+ f 97.3 5.9E-05 2E-09 78.4 1.8 35 362-404 157-191 (377)
211 3ney_A 55 kDa erythrocyte memb 97.3 0.00012 4.2E-09 68.7 3.6 24 381-404 18-41 (197)
212 3kl4_A SRP54, signal recogniti 97.3 0.00054 1.8E-08 72.3 8.4 25 381-405 96-120 (433)
213 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00015 5.2E-09 65.0 3.5 23 382-404 23-45 (149)
214 2pjz_A Hypothetical protein ST 97.2 2.5E-07 8.6E-12 91.7 -16.7 78 534-615 127-212 (263)
215 3b5x_A Lipid A export ATP-bind 97.2 4.9E-06 1.7E-10 92.3 -8.2 81 534-617 479-566 (582)
216 2ghi_A Transport protein; mult 97.2 5.2E-07 1.8E-11 89.4 -14.7 80 534-616 154-240 (260)
217 3bos_A Putative DNA replicatio 97.2 0.00027 9.1E-09 68.3 4.8 25 381-405 51-75 (242)
218 2z43_A DNA repair and recombin 97.2 0.001 3.4E-08 67.9 9.1 26 381-406 106-131 (324)
219 2f1r_A Molybdopterin-guanine d 97.1 6.3E-05 2.2E-09 69.2 -0.0 22 383-404 3-24 (171)
220 2xau_A PRE-mRNA-splicing facto 97.1 0.00028 9.6E-09 80.6 5.2 24 381-404 108-131 (773)
221 1mv5_A LMRA, multidrug resista 97.1 9.4E-07 3.2E-11 86.6 -13.5 79 534-615 138-223 (243)
222 3cf0_A Transitional endoplasmi 97.1 0.00099 3.4E-08 67.2 8.5 24 381-404 48-71 (301)
223 1ypw_A Transitional endoplasmi 97.1 0.0011 3.8E-08 76.1 9.4 103 381-505 237-351 (806)
224 2zu0_C Probable ATP-dependent 97.1 4.2E-07 1.4E-11 90.4 -16.7 81 535-616 164-252 (267)
225 3b9p_A CG5977-PA, isoform A; A 97.1 0.0015 5.1E-08 65.6 9.1 24 381-404 53-76 (297)
226 1lv7_A FTSH; alpha/beta domain 97.0 0.0019 6.6E-08 63.2 9.7 21 384-404 47-67 (257)
227 2yv5_A YJEQ protein; hydrolase 97.0 0.00027 9.2E-09 71.4 3.5 34 381-424 164-197 (302)
228 2ff7_A Alpha-hemolysin translo 97.0 4.4E-07 1.5E-11 89.2 -16.7 79 534-615 144-229 (247)
229 1u94_A RECA protein, recombina 97.0 0.0057 1.9E-07 63.0 13.4 120 381-504 62-200 (356)
230 2cbz_A Multidrug resistance-as 97.0 6.5E-07 2.2E-11 87.4 -15.7 81 534-616 126-215 (237)
231 1w1w_A Structural maintenance 97.0 0.00073 2.5E-08 71.9 6.4 66 442-508 331-401 (430)
232 3qf4_A ABC transporter, ATP-bi 97.0 2.4E-06 8.1E-11 94.9 -13.4 82 534-618 478-566 (587)
233 1w1w_A Structural maintenance 97.0 0.00034 1.2E-08 74.5 3.7 69 534-604 332-411 (430)
234 3qf4_B Uncharacterized ABC tra 97.0 2.8E-06 9.6E-11 94.5 -13.0 81 534-617 490-577 (598)
235 2if2_A Dephospho-COA kinase; a 96.9 0.00039 1.3E-08 65.7 3.4 21 384-404 3-23 (204)
236 1jjv_A Dephospho-COA kinase; P 96.9 0.00032 1.1E-08 66.4 2.8 21 384-404 4-24 (206)
237 1cke_A CK, MSSA, protein (cyti 96.9 0.00042 1.4E-08 66.6 3.6 23 382-404 5-27 (227)
238 2qt1_A Nicotinamide riboside k 96.9 0.00039 1.3E-08 65.9 3.2 24 381-404 20-43 (207)
239 1oix_A RAS-related protein RAB 96.9 0.00043 1.5E-08 64.6 3.4 21 384-404 31-51 (191)
240 1jbk_A CLPB protein; beta barr 96.9 0.00043 1.5E-08 64.0 3.2 25 381-405 42-66 (195)
241 2ius_A DNA translocase FTSK; n 96.9 0.00051 1.7E-08 73.9 3.8 25 381-405 166-190 (512)
242 3cr8_A Sulfate adenylyltranfer 96.9 0.00034 1.2E-08 76.4 2.4 24 381-404 368-391 (552)
243 2pez_A Bifunctional 3'-phospho 96.8 0.00055 1.9E-08 63.2 3.5 24 381-404 4-27 (179)
244 2i1q_A DNA repair and recombin 96.8 0.0031 1E-07 64.2 9.4 26 381-406 97-122 (322)
245 2bbs_A Cystic fibrosis transme 96.8 2E-06 6.7E-11 86.4 -14.3 80 534-615 158-244 (290)
246 2pze_A Cystic fibrosis transme 96.8 8.7E-07 3E-11 86.0 -16.4 80 534-616 129-216 (229)
247 2f9l_A RAB11B, member RAS onco 96.8 0.00053 1.8E-08 64.4 3.3 21 384-404 7-27 (199)
248 3qks_A DNA double-strand break 96.8 0.00057 2E-08 64.7 3.5 23 382-404 23-45 (203)
249 2v1u_A Cell division control p 96.8 0.0026 8.7E-08 66.1 8.8 123 381-505 43-178 (387)
250 3m6a_A ATP-dependent protease 96.8 0.00037 1.3E-08 76.3 2.2 25 381-405 107-131 (543)
251 3auy_A DNA double-strand break 96.8 0.0014 4.9E-08 68.1 6.5 64 442-507 278-349 (371)
252 4a82_A Cystic fibrosis transme 96.8 2.6E-06 8.7E-11 94.5 -15.3 82 534-618 476-564 (578)
253 2p67_A LAO/AO transport system 96.8 0.00026 8.9E-09 72.8 0.7 40 358-405 40-79 (341)
254 2yvu_A Probable adenylyl-sulfa 96.7 0.0011 3.7E-08 61.6 4.6 24 381-404 12-35 (186)
255 3llm_A ATP-dependent RNA helic 96.7 0.0049 1.7E-07 59.5 9.3 25 381-405 75-99 (235)
256 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.013 4.4E-07 58.9 12.3 25 381-405 122-146 (331)
257 2e87_A Hypothetical protein PH 96.7 0.00058 2E-08 70.7 2.4 23 382-404 167-189 (357)
258 2p65_A Hypothetical protein PF 96.7 0.00062 2.1E-08 62.7 2.4 24 381-404 42-65 (187)
259 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.00093 3.2E-08 69.6 3.8 24 381-404 19-42 (392)
260 2qor_A Guanylate kinase; phosp 96.7 0.00083 2.8E-08 63.5 3.2 24 381-404 11-34 (204)
261 2yl4_A ATP-binding cassette SU 96.6 4.5E-06 1.5E-10 92.9 -15.0 78 534-614 482-566 (595)
262 3t15_A Ribulose bisphosphate c 96.6 0.007 2.4E-07 60.6 9.7 22 383-404 37-58 (293)
263 3h4m_A Proteasome-activating n 96.6 0.0036 1.2E-07 62.3 7.5 24 381-404 50-73 (285)
264 2qgz_A Helicase loader, putati 96.6 0.00043 1.5E-08 70.1 0.6 24 382-405 152-175 (308)
265 1xp8_A RECA protein, recombina 96.5 0.028 9.7E-07 57.9 14.1 120 381-504 73-211 (366)
266 3k1j_A LON protease, ATP-depen 96.5 0.00063 2.1E-08 75.7 1.6 40 357-404 43-82 (604)
267 3b60_A Lipid A export ATP-bind 96.5 5.1E-06 1.8E-10 92.2 -15.3 81 534-617 479-566 (582)
268 1njg_A DNA polymerase III subu 96.5 0.0072 2.4E-07 57.8 9.0 22 383-404 46-67 (250)
269 3t61_A Gluconokinase; PSI-biol 96.5 0.0012 4.1E-08 62.1 3.3 23 382-404 18-40 (202)
270 2www_A Methylmalonic aciduria 96.5 0.0011 3.6E-08 68.4 2.8 25 381-405 73-97 (349)
271 4a1f_A DNAB helicase, replicat 96.4 0.0035 1.2E-07 63.9 6.2 89 381-471 45-137 (338)
272 2b8t_A Thymidine kinase; deoxy 96.4 0.0054 1.9E-07 58.6 7.1 109 381-502 11-124 (223)
273 4b4t_K 26S protease regulatory 96.3 0.0089 3E-07 62.9 9.0 22 383-404 207-228 (428)
274 3cm0_A Adenylate kinase; ATP-b 96.3 0.0017 5.8E-08 60.0 2.9 24 381-404 3-26 (186)
275 4ad8_A DNA repair protein RECN 96.3 0.0011 3.7E-08 72.3 1.6 71 532-605 393-473 (517)
276 1y63_A LMAJ004144AAA protein; 96.3 0.0023 7.9E-08 59.3 3.6 24 381-404 9-32 (184)
277 3bh0_A DNAB-like replicative h 96.3 0.018 6.2E-07 58.2 10.5 26 381-406 67-92 (315)
278 4b4t_J 26S protease regulatory 96.2 0.01 3.5E-07 61.6 8.6 21 384-404 184-204 (405)
279 2gj8_A MNME, tRNA modification 96.2 0.002 6.8E-08 58.9 2.9 24 381-404 3-26 (172)
280 3dm5_A SRP54, signal recogniti 96.2 0.02 6.8E-07 60.3 10.9 24 381-404 99-122 (443)
281 4eaq_A DTMP kinase, thymidylat 96.2 0.0023 8E-08 61.6 3.5 24 381-404 25-48 (229)
282 1q3t_A Cytidylate kinase; nucl 96.2 0.0025 8.6E-08 61.6 3.8 24 381-404 15-38 (236)
283 4b4t_L 26S protease subunit RP 96.2 0.015 5E-07 61.4 9.8 22 383-404 216-237 (437)
284 3io5_A Recombination and repai 96.2 0.045 1.5E-06 54.8 12.7 120 381-505 28-173 (333)
285 3auy_A DNA double-strand break 96.2 0.0024 8.1E-08 66.5 3.4 69 533-604 278-360 (371)
286 1m7g_A Adenylylsulfate kinase; 96.2 0.0028 9.4E-08 60.2 3.6 24 381-404 24-47 (211)
287 1sxj_C Activator 1 40 kDa subu 96.2 0.0011 3.9E-08 67.9 1.0 39 358-404 28-68 (340)
288 1np6_A Molybdopterin-guanine d 96.1 0.003 1E-07 58.0 3.4 23 383-405 7-29 (174)
289 2wji_A Ferrous iron transport 96.1 0.0023 8E-08 57.9 2.6 22 383-404 4-25 (165)
290 3kb2_A SPBC2 prophage-derived 96.1 0.003 1E-07 57.4 3.2 21 384-404 3-23 (173)
291 2ffh_A Protein (FFH); SRP54, s 96.0 0.0035 1.2E-07 66.0 3.8 25 381-405 97-121 (425)
292 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 3.6E-05 1.2E-09 80.1 -11.4 76 532-609 276-364 (365)
293 3syl_A Protein CBBX; photosynt 96.0 0.03 1E-06 56.2 10.5 25 381-405 66-90 (309)
294 3d8b_A Fidgetin-like protein 1 96.0 0.014 4.6E-07 60.3 8.1 24 381-404 116-139 (357)
295 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.026 8.9E-07 55.0 9.7 23 382-404 39-61 (262)
296 4b4t_M 26S protease regulatory 95.9 0.014 4.8E-07 61.4 8.0 22 383-404 216-237 (434)
297 1j8m_F SRP54, signal recogniti 95.9 0.0033 1.1E-07 63.1 3.0 26 381-406 97-122 (297)
298 1qhx_A CPT, protein (chloramph 95.9 0.0039 1.3E-07 57.1 3.4 23 382-404 3-25 (178)
299 1ex7_A Guanylate kinase; subst 95.9 0.0036 1.2E-07 58.1 3.0 22 383-404 2-23 (186)
300 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.029 9.8E-07 56.9 9.9 24 381-404 44-67 (322)
301 2ze6_A Isopentenyl transferase 95.8 0.004 1.4E-07 61.0 3.2 21 384-404 3-23 (253)
302 1kht_A Adenylate kinase; phosp 95.8 0.0046 1.6E-07 57.2 3.3 23 382-404 3-25 (192)
303 2wjg_A FEOB, ferrous iron tran 95.8 0.0039 1.3E-07 57.4 2.8 22 383-404 8-29 (188)
304 1vht_A Dephospho-COA kinase; s 95.8 0.0047 1.6E-07 58.8 3.4 23 382-404 4-26 (218)
305 3hu3_A Transitional endoplasmi 95.7 0.038 1.3E-06 59.4 10.6 22 383-404 239-260 (489)
306 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0026 9E-08 64.8 1.4 26 381-406 21-48 (359)
307 3pvs_A Replication-associated 95.7 0.0063 2.2E-07 64.7 4.3 21 384-404 52-72 (447)
308 2p5t_B PEZT; postsegregational 95.7 0.0041 1.4E-07 60.9 2.6 24 381-404 31-54 (253)
309 1via_A Shikimate kinase; struc 95.7 0.005 1.7E-07 56.4 3.0 21 384-404 6-26 (175)
310 1ega_A Protein (GTP-binding pr 95.7 0.0038 1.3E-07 62.8 2.4 24 381-404 7-30 (301)
311 2rhm_A Putative kinase; P-loop 95.7 0.0058 2E-07 56.7 3.5 24 381-404 4-27 (193)
312 3co5_A Putative two-component 95.7 0.036 1.2E-06 48.8 8.5 24 381-404 26-49 (143)
313 4b4t_I 26S protease regulatory 95.7 0.022 7.6E-07 59.4 8.1 22 383-404 217-238 (437)
314 2qp9_X Vacuolar protein sortin 95.6 0.021 7.2E-07 58.8 7.7 23 382-404 84-106 (355)
315 3cmw_A Protein RECA, recombina 95.6 0.1 3.5E-06 63.7 14.6 119 381-503 731-868 (1706)
316 3ice_A Transcription terminati 95.6 0.0088 3E-07 61.4 4.6 27 381-407 173-199 (422)
317 1qvr_A CLPB protein; coiled co 95.6 0.0081 2.8E-07 69.6 5.0 24 382-405 191-214 (854)
318 1uf9_A TT1252 protein; P-loop, 95.6 0.007 2.4E-07 56.6 3.6 24 381-404 7-30 (203)
319 1sgw_A Putative ABC transporte 95.6 1.3E-05 4.5E-10 76.6 -15.5 73 534-608 132-211 (214)
320 3r20_A Cytidylate kinase; stru 95.6 0.0064 2.2E-07 58.5 3.3 23 382-404 9-31 (233)
321 3iij_A Coilin-interacting nucl 95.6 0.0064 2.2E-07 55.9 3.2 24 381-404 10-33 (180)
322 1gvn_B Zeta; postsegregational 95.6 0.0062 2.1E-07 60.8 3.3 24 381-404 32-55 (287)
323 3lw7_A Adenylate kinase relate 95.6 0.0059 2E-07 55.4 3.0 20 383-402 2-21 (179)
324 2q6t_A DNAB replication FORK h 95.5 0.04 1.4E-06 58.5 9.9 28 381-408 199-226 (444)
325 1w5s_A Origin recognition comp 95.5 0.026 8.8E-07 59.1 8.2 88 381-470 49-147 (412)
326 1ly1_A Polynucleotide kinase; 95.5 0.0067 2.3E-07 55.5 3.2 22 383-404 3-24 (181)
327 2zej_A Dardarin, leucine-rich 95.5 0.0046 1.6E-07 57.0 2.0 21 384-404 4-24 (184)
328 1m2o_B GTP-binding protein SAR 95.5 0.0077 2.6E-07 55.9 3.5 24 381-404 22-45 (190)
329 3pfi_A Holliday junction ATP-d 95.5 0.042 1.4E-06 55.9 9.4 22 383-404 56-77 (338)
330 2jaq_A Deoxyguanosine kinase; 95.4 0.0075 2.6E-07 56.4 3.3 21 384-404 2-22 (205)
331 4b4t_H 26S protease regulatory 95.4 0.043 1.5E-06 57.8 9.3 22 383-404 244-265 (467)
332 1ypw_A Transitional endoplasmi 95.4 0.0095 3.2E-07 68.3 4.7 25 381-405 510-534 (806)
333 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.00012 4.2E-09 78.2 -10.6 88 534-625 234-345 (460)
334 2c95_A Adenylate kinase 1; tra 95.3 0.0093 3.2E-07 55.4 3.6 24 381-404 8-31 (196)
335 2v54_A DTMP kinase, thymidylat 95.3 0.0089 3.1E-07 56.0 3.5 24 381-404 3-26 (204)
336 1gtv_A TMK, thymidylate kinase 95.3 0.0051 1.8E-07 58.1 1.5 21 384-404 2-22 (214)
337 2wwf_A Thymidilate kinase, put 95.2 0.01 3.5E-07 55.9 3.6 24 381-404 9-32 (212)
338 1xjc_A MOBB protein homolog; s 95.2 0.01 3.5E-07 54.0 3.4 22 383-404 5-26 (169)
339 3eie_A Vacuolar protein sortin 95.2 0.019 6.4E-07 58.3 5.8 23 382-404 51-73 (322)
340 3trf_A Shikimate kinase, SK; a 95.2 0.0098 3.3E-07 54.8 3.4 23 382-404 5-27 (185)
341 3bgw_A DNAB-like replicative h 95.2 0.13 4.6E-06 54.4 12.6 28 381-408 196-223 (444)
342 1tev_A UMP-CMP kinase; ploop, 95.2 0.0093 3.2E-07 55.2 3.2 23 382-404 3-25 (196)
343 3ake_A Cytidylate kinase; CMP 95.2 0.0099 3.4E-07 55.8 3.3 21 384-404 4-24 (208)
344 2plr_A DTMP kinase, probable t 95.2 0.0098 3.3E-07 56.0 3.3 24 381-404 3-26 (213)
345 2r8r_A Sensor protein; KDPD, P 95.1 0.0096 3.3E-07 56.7 2.9 120 381-507 4-130 (228)
346 2vli_A Antibiotic resistance p 95.1 0.0087 3E-07 55.0 2.6 24 381-404 4-27 (183)
347 1a5t_A Delta prime, HOLB; zinc 95.1 0.34 1.1E-05 49.2 14.8 22 383-404 25-46 (334)
348 1nn5_A Similar to deoxythymidy 95.1 0.012 4.2E-07 55.5 3.7 24 381-404 8-31 (215)
349 3vfd_A Spastin; ATPase, microt 95.1 0.037 1.2E-06 57.7 7.5 24 381-404 147-170 (389)
350 1nks_A Adenylate kinase; therm 95.0 0.012 4.1E-07 54.4 3.2 21 384-404 3-23 (194)
351 1jr3_A DNA polymerase III subu 95.0 0.064 2.2E-06 55.2 9.1 22 383-404 39-60 (373)
352 2z0h_A DTMP kinase, thymidylat 95.0 0.012 4.1E-07 54.7 3.2 21 384-404 2-22 (197)
353 3lxx_A GTPase IMAP family memb 94.9 0.011 3.7E-07 57.2 2.8 22 383-404 30-51 (239)
354 2bwj_A Adenylate kinase 5; pho 94.9 0.014 4.8E-07 54.3 3.5 24 381-404 11-34 (199)
355 3k53_A Ferrous iron transport 94.9 0.011 3.8E-07 58.3 2.8 22 383-404 4-25 (271)
356 3t34_A Dynamin-related protein 94.9 0.014 4.7E-07 60.3 3.6 21 384-404 36-56 (360)
357 2zan_A Vacuolar protein sortin 94.9 0.033 1.1E-06 59.2 6.6 23 382-404 167-189 (444)
358 1q57_A DNA primase/helicase; d 94.8 0.11 3.6E-06 56.2 10.7 26 381-406 241-266 (503)
359 1a7j_A Phosphoribulokinase; tr 94.8 0.0097 3.3E-07 59.5 2.2 24 381-404 4-27 (290)
360 1f6b_A SAR1; gtpases, N-termin 94.8 0.0083 2.8E-07 56.1 1.5 22 383-404 26-47 (198)
361 1aky_A Adenylate kinase; ATP:A 94.7 0.016 5.5E-07 55.1 3.5 24 381-404 3-26 (220)
362 2qtf_A Protein HFLX, GTP-bindi 94.7 0.012 3.9E-07 60.9 2.5 21 384-404 181-201 (364)
363 3cmu_A Protein RECA, recombina 94.7 0.11 3.6E-06 64.4 11.0 133 359-503 1064-1217(2050)
364 3cmw_A Protein RECA, recombina 94.7 0.23 7.8E-06 60.7 13.8 131 361-503 19-170 (1706)
365 2iyv_A Shikimate kinase, SK; t 94.7 0.016 5.3E-07 53.4 3.0 22 383-404 3-24 (184)
366 3fb4_A Adenylate kinase; psych 94.7 0.016 5.4E-07 54.9 3.2 21 384-404 2-22 (216)
367 1qf9_A UMP/CMP kinase, protein 94.7 0.017 5.8E-07 53.3 3.3 23 382-404 6-28 (194)
368 1e6c_A Shikimate kinase; phosp 94.6 0.015 5.3E-07 52.7 2.9 22 383-404 3-24 (173)
369 1zd8_A GTP:AMP phosphotransfer 94.6 0.018 6E-07 55.2 3.5 24 381-404 6-29 (227)
370 1mky_A Probable GTP-binding pr 94.6 0.014 4.7E-07 62.1 2.8 22 383-404 181-202 (439)
371 1zak_A Adenylate kinase; ATP:A 94.6 0.018 6.3E-07 54.8 3.4 24 381-404 4-27 (222)
372 2zts_A Putative uncharacterize 94.6 0.25 8.5E-06 47.3 11.7 26 381-406 29-54 (251)
373 2orv_A Thymidine kinase; TP4A 94.6 0.075 2.6E-06 50.6 7.5 106 381-503 18-125 (234)
374 3e2i_A Thymidine kinase; Zn-bi 94.5 0.087 3E-06 49.6 7.8 107 381-503 27-137 (219)
375 1ukz_A Uridylate kinase; trans 94.5 0.019 6.6E-07 53.7 3.4 24 381-404 14-37 (203)
376 2pbr_A DTMP kinase, thymidylat 94.5 0.018 6.2E-07 53.2 3.1 21 384-404 2-22 (195)
377 3dl0_A Adenylate kinase; phosp 94.5 0.018 6.2E-07 54.5 3.2 21 384-404 2-22 (216)
378 3cmu_A Protein RECA, recombina 94.5 0.26 8.9E-06 61.0 13.8 87 381-471 1426-1515(2050)
379 2ged_A SR-beta, signal recogni 94.5 0.02 7E-07 52.8 3.3 22 383-404 49-70 (193)
380 2pt5_A Shikimate kinase, SK; a 94.5 0.019 6.6E-07 51.8 3.1 21 384-404 2-22 (168)
381 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.019 6.6E-07 56.2 3.3 24 381-404 3-26 (260)
382 2cdn_A Adenylate kinase; phosp 94.4 0.023 7.9E-07 53.1 3.6 24 381-404 19-42 (201)
383 2grj_A Dephospho-COA kinase; T 94.4 0.02 7E-07 53.3 3.2 23 382-404 12-34 (192)
384 2ohf_A Protein OLA1, GTP-bindi 94.4 0.016 5.6E-07 60.1 2.7 25 381-405 21-45 (396)
385 1sxj_A Activator 1 95 kDa subu 94.2 0.093 3.2E-06 56.9 8.4 23 382-404 77-99 (516)
386 3cf2_A TER ATPase, transitiona 94.2 0.11 3.8E-06 58.9 9.1 22 383-404 239-260 (806)
387 1zuh_A Shikimate kinase; alpha 94.2 0.025 8.5E-07 51.1 3.2 22 383-404 8-29 (168)
388 2xb4_A Adenylate kinase; ATP-b 94.1 0.024 8.1E-07 54.1 3.1 21 384-404 2-22 (223)
389 2dyk_A GTP-binding protein; GT 94.1 0.027 9.3E-07 49.9 3.3 21 384-404 3-23 (161)
390 1uj2_A Uridine-cytidine kinase 94.1 0.024 8.3E-07 55.2 3.2 22 383-404 23-44 (252)
391 1ojl_A Transcriptional regulat 94.1 0.028 9.5E-07 56.5 3.6 24 381-404 24-47 (304)
392 2ce2_X GTPase HRAS; signaling 94.1 0.029 1E-06 49.8 3.4 21 384-404 5-25 (166)
393 1z2a_A RAS-related protein RAB 94.0 0.029 9.8E-07 50.1 3.3 21 384-404 7-27 (168)
394 2lkc_A Translation initiation 94.0 0.028 9.6E-07 50.9 3.3 24 381-404 7-30 (178)
395 4ag6_A VIRB4 ATPase, type IV s 94.0 0.026 8.9E-07 58.9 3.4 26 381-406 34-59 (392)
396 2f6r_A COA synthase, bifunctio 94.0 0.026 9.1E-07 56.0 3.2 23 382-404 75-97 (281)
397 3tlx_A Adenylate kinase 2; str 94.0 0.029 9.8E-07 54.4 3.4 24 381-404 28-51 (243)
398 3u61_B DNA polymerase accessor 93.9 0.047 1.6E-06 55.2 5.0 22 383-404 49-70 (324)
399 3b1v_A Ferrous iron uptake tra 93.9 0.024 8.1E-07 56.0 2.6 22 383-404 4-25 (272)
400 1fzq_A ADP-ribosylation factor 93.8 0.02 6.8E-07 52.5 1.9 23 382-404 16-38 (181)
401 2qag_A Septin-2, protein NEDD5 93.8 0.018 6E-07 59.5 1.6 20 385-404 40-59 (361)
402 1g16_A RAS-related protein SEC 93.8 0.034 1.2E-06 49.7 3.4 21 384-404 5-25 (170)
403 1z0j_A RAB-22, RAS-related pro 93.8 0.033 1.1E-06 49.8 3.3 21 384-404 8-28 (170)
404 1e4v_A Adenylate kinase; trans 93.8 0.031 1.1E-06 52.8 3.3 21 384-404 2-22 (214)
405 1kao_A RAP2A; GTP-binding prot 93.8 0.034 1.2E-06 49.5 3.3 21 384-404 5-25 (167)
406 1u8z_A RAS-related protein RAL 93.8 0.035 1.2E-06 49.5 3.3 21 384-404 6-26 (168)
407 1iqp_A RFCS; clamp loader, ext 93.8 0.052 1.8E-06 54.6 5.0 21 384-404 48-68 (327)
408 1z08_A RAS-related protein RAB 93.8 0.035 1.2E-06 49.7 3.3 21 384-404 8-28 (170)
409 1ky3_A GTP-binding protein YPT 93.7 0.035 1.2E-06 50.3 3.3 21 384-404 10-30 (182)
410 1ek0_A Protein (GTP-binding pr 93.7 0.036 1.2E-06 49.6 3.3 21 384-404 5-25 (170)
411 1sxj_D Activator 1 41 kDa subu 93.7 0.023 7.9E-07 58.1 2.2 23 384-406 60-82 (353)
412 4edh_A DTMP kinase, thymidylat 93.6 0.036 1.2E-06 52.5 3.3 24 381-404 5-28 (213)
413 2orw_A Thymidine kinase; TMTK, 93.6 0.041 1.4E-06 50.8 3.6 24 381-404 2-25 (184)
414 1svi_A GTP-binding protein YSX 93.6 0.032 1.1E-06 51.4 2.9 23 382-404 23-45 (195)
415 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.038 1.3E-06 49.9 3.3 21 384-404 9-29 (177)
416 1c1y_A RAS-related protein RAP 93.6 0.04 1.4E-06 49.1 3.3 21 384-404 5-25 (167)
417 3umf_A Adenylate kinase; rossm 93.6 0.039 1.3E-06 52.4 3.4 24 381-404 28-51 (217)
418 2erx_A GTP-binding protein DI- 93.6 0.033 1.1E-06 49.9 2.8 21 384-404 5-25 (172)
419 3be4_A Adenylate kinase; malar 93.6 0.039 1.3E-06 52.3 3.5 24 381-404 4-27 (217)
420 2fn4_A P23, RAS-related protei 93.5 0.041 1.4E-06 49.8 3.4 22 383-404 10-31 (181)
421 4fcw_A Chaperone protein CLPB; 93.5 0.038 1.3E-06 55.3 3.5 24 383-406 48-71 (311)
422 3lv8_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 52.9 3.6 25 381-405 26-50 (236)
423 3pqc_A Probable GTP-binding pr 93.5 0.035 1.2E-06 51.0 2.9 22 383-404 24-45 (195)
424 1upt_A ARL1, ADP-ribosylation 93.4 0.042 1.5E-06 49.2 3.3 22 383-404 8-29 (171)
425 3v9p_A DTMP kinase, thymidylat 93.4 0.036 1.2E-06 53.1 2.9 24 381-404 24-47 (227)
426 2nzj_A GTP-binding protein REM 93.4 0.033 1.1E-06 50.2 2.6 21 384-404 6-26 (175)
427 1moz_A ARL1, ADP-ribosylation 93.4 0.033 1.1E-06 50.7 2.5 24 381-404 17-40 (183)
428 3q72_A GTP-binding protein RAD 93.4 0.027 9.2E-07 50.3 1.9 21 384-404 4-24 (166)
429 2dy1_A Elongation factor G; tr 93.4 0.036 1.2E-06 62.1 3.2 24 381-404 8-31 (665)
430 3pxg_A Negative regulator of g 93.4 0.023 8E-07 60.8 1.7 24 382-405 201-224 (468)
431 3q85_A GTP-binding protein REM 93.3 0.035 1.2E-06 49.7 2.6 21 384-404 4-24 (169)
432 2qmh_A HPR kinase/phosphorylas 93.3 0.044 1.5E-06 50.9 3.2 24 381-404 33-56 (205)
433 4tmk_A Protein (thymidylate ki 93.3 0.048 1.6E-06 51.6 3.5 24 381-404 2-25 (213)
434 2oil_A CATX-8, RAS-related pro 93.3 0.044 1.5E-06 50.5 3.3 21 384-404 27-47 (193)
435 2cxx_A Probable GTP-binding pr 93.3 0.037 1.3E-06 50.7 2.7 21 384-404 3-23 (190)
436 1r2q_A RAS-related protein RAB 93.3 0.046 1.6E-06 48.8 3.3 21 384-404 8-28 (170)
437 4dsu_A GTPase KRAS, isoform 2B 93.3 0.045 1.6E-06 49.9 3.3 21 384-404 6-26 (189)
438 1r6b_X CLPA protein; AAA+, N-t 93.3 0.041 1.4E-06 62.7 3.7 25 381-405 206-230 (758)
439 2y8e_A RAB-protein 6, GH09086P 93.3 0.048 1.7E-06 49.2 3.4 21 384-404 16-36 (179)
440 1ltq_A Polynucleotide kinase; 93.3 0.041 1.4E-06 55.0 3.2 22 383-404 3-24 (301)
441 3d3q_A TRNA delta(2)-isopenten 93.2 0.042 1.4E-06 55.7 3.2 22 383-404 8-29 (340)
442 1r8s_A ADP-ribosylation factor 93.2 0.049 1.7E-06 48.4 3.3 21 384-404 2-22 (164)
443 3ihw_A Centg3; RAS, centaurin, 93.2 0.048 1.6E-06 50.1 3.3 21 384-404 22-42 (184)
444 1m7b_A RND3/RHOE small GTP-bin 93.2 0.05 1.7E-06 49.8 3.4 21 384-404 9-29 (184)
445 3exa_A TRNA delta(2)-isopenten 93.2 0.045 1.5E-06 54.7 3.3 23 382-404 3-25 (322)
446 3con_A GTPase NRAS; structural 93.2 0.049 1.7E-06 50.0 3.3 21 384-404 23-43 (190)
447 1z0f_A RAB14, member RAS oncog 93.1 0.05 1.7E-06 49.1 3.3 21 384-404 17-37 (179)
448 2bme_A RAB4A, RAS-related prot 93.1 0.052 1.8E-06 49.5 3.4 21 384-404 12-32 (186)
449 3bc1_A RAS-related protein RAB 93.1 0.05 1.7E-06 49.8 3.3 21 384-404 13-33 (195)
450 1nrj_B SR-beta, signal recogni 93.1 0.049 1.7E-06 51.3 3.3 22 383-404 13-34 (218)
451 3t1o_A Gliding protein MGLA; G 93.1 0.05 1.7E-06 50.0 3.3 21 384-404 16-36 (198)
452 2a9k_A RAS-related protein RAL 93.0 0.052 1.8E-06 49.3 3.3 21 384-404 20-40 (187)
453 3clv_A RAB5 protein, putative; 93.0 0.053 1.8E-06 50.1 3.3 21 384-404 9-29 (208)
454 3iby_A Ferrous iron transport 93.0 0.046 1.6E-06 53.4 3.0 21 384-404 3-23 (256)
455 3zvl_A Bifunctional polynucleo 93.0 0.048 1.6E-06 57.4 3.3 24 381-404 257-280 (416)
456 3tw8_B RAS-related protein RAB 92.9 0.034 1.2E-06 50.3 1.8 21 384-404 11-31 (181)
457 2g6b_A RAS-related protein RAB 92.9 0.057 1.9E-06 48.9 3.3 21 384-404 12-32 (180)
458 2h92_A Cytidylate kinase; ross 92.9 0.055 1.9E-06 51.2 3.3 23 382-404 3-25 (219)
459 1jal_A YCHF protein; nucleotid 92.9 0.057 1.9E-06 55.4 3.5 22 383-404 3-24 (363)
460 1f2t_B RAD50 ABC-ATPase; DNA d 92.9 0.00023 7.8E-09 63.7 -12.6 71 532-604 54-137 (148)
461 1vg8_A RAS-related protein RAB 92.9 0.057 1.9E-06 50.3 3.3 21 384-404 10-30 (207)
462 2efe_B Small GTP-binding prote 92.9 0.058 2E-06 48.9 3.3 21 384-404 14-34 (181)
463 2fg5_A RAB-22B, RAS-related pr 92.8 0.059 2E-06 49.7 3.4 21 384-404 25-45 (192)
464 1w4r_A Thymidine kinase; type 92.8 0.014 4.9E-07 54.1 -0.9 107 381-506 19-129 (195)
465 1ak2_A Adenylate kinase isoenz 92.8 0.061 2.1E-06 51.6 3.6 24 381-404 15-38 (233)
466 2dby_A GTP-binding protein; GD 92.8 0.049 1.7E-06 56.1 3.1 22 384-405 3-24 (368)
467 2hxs_A RAB-26, RAS-related pro 92.8 0.051 1.8E-06 49.1 2.9 21 384-404 8-28 (178)
468 2ocp_A DGK, deoxyguanosine kin 92.8 0.058 2E-06 52.0 3.4 23 382-404 2-24 (241)
469 2bov_A RAla, RAS-related prote 92.8 0.059 2E-06 50.0 3.3 21 384-404 16-36 (206)
470 2gf9_A RAS-related protein RAB 92.7 0.061 2.1E-06 49.3 3.3 21 384-404 24-44 (189)
471 3lxw_A GTPase IMAP family memb 92.7 0.049 1.7E-06 52.8 2.8 22 383-404 22-43 (247)
472 2gf0_A GTP-binding protein DI- 92.7 0.063 2.2E-06 49.5 3.4 22 383-404 9-30 (199)
473 2ew1_A RAS-related protein RAB 92.7 0.063 2.2E-06 50.1 3.4 21 384-404 28-48 (201)
474 2wsm_A Hydrogenase expression/ 92.7 0.062 2.1E-06 50.8 3.4 22 383-404 31-52 (221)
475 3kkq_A RAS-related protein M-R 92.7 0.063 2.2E-06 48.8 3.3 21 384-404 20-40 (183)
476 3sr0_A Adenylate kinase; phosp 92.7 0.059 2E-06 50.7 3.2 21 384-404 2-22 (206)
477 3tmk_A Thymidylate kinase; pho 92.7 0.067 2.3E-06 50.7 3.5 24 381-404 4-27 (216)
478 2cjw_A GTP-binding protein GEM 92.6 0.064 2.2E-06 49.6 3.3 21 384-404 8-28 (192)
479 3tkl_A RAS-related protein RAB 92.6 0.064 2.2E-06 49.3 3.3 21 384-404 18-38 (196)
480 3ld9_A DTMP kinase, thymidylat 92.6 0.065 2.2E-06 51.0 3.4 25 381-405 20-44 (223)
481 3dz8_A RAS-related protein RAB 92.6 0.067 2.3E-06 49.2 3.4 21 384-404 25-45 (191)
482 2j9r_A Thymidine kinase; TK1, 92.6 0.3 1E-05 45.9 7.8 108 381-503 27-137 (214)
483 1qvr_A CLPB protein; coiled co 92.6 0.13 4.3E-06 59.5 6.5 24 383-406 589-612 (854)
484 3t5g_A GTP-binding protein RHE 92.6 0.068 2.3E-06 48.5 3.4 21 384-404 8-28 (181)
485 3crm_A TRNA delta(2)-isopenten 92.6 0.058 2E-06 54.3 3.1 22 383-404 6-27 (323)
486 1mh1_A RAC1; GTP-binding, GTPa 92.6 0.067 2.3E-06 48.6 3.3 21 384-404 7-27 (186)
487 3oes_A GTPase rhebl1; small GT 92.5 0.069 2.3E-06 49.6 3.4 22 383-404 25-46 (201)
488 3foz_A TRNA delta(2)-isopenten 92.4 0.065 2.2E-06 53.5 3.2 23 382-404 10-32 (316)
489 2bcg_Y Protein YP2, GTP-bindin 92.4 0.074 2.5E-06 49.6 3.4 21 384-404 10-30 (206)
490 2a5j_A RAS-related protein RAB 92.4 0.072 2.5E-06 49.0 3.3 21 384-404 23-43 (191)
491 1gwn_A RHO-related GTP-binding 92.4 0.075 2.6E-06 49.8 3.4 21 384-404 30-50 (205)
492 3cbq_A GTP-binding protein REM 92.3 0.04 1.4E-06 51.2 1.5 21 384-404 25-45 (195)
493 1wf3_A GTP-binding protein; GT 92.3 0.06 2E-06 54.0 2.8 22 383-404 8-29 (301)
494 3n70_A Transport activator; si 92.3 0.078 2.7E-06 46.6 3.3 24 381-404 23-46 (145)
495 1z06_A RAS-related protein RAB 92.3 0.075 2.6E-06 48.7 3.3 21 384-404 22-42 (189)
496 3reg_A RHO-like small GTPase; 92.3 0.075 2.6E-06 48.9 3.3 21 384-404 25-45 (194)
497 1zd9_A ADP-ribosylation factor 92.3 0.076 2.6E-06 48.7 3.3 21 384-404 24-44 (188)
498 3tqf_A HPR(Ser) kinase; transf 92.3 0.082 2.8E-06 47.9 3.3 24 381-404 15-38 (181)
499 2xtp_A GTPase IMAP family memb 92.2 0.064 2.2E-06 52.3 2.9 22 383-404 23-44 (260)
500 3a1s_A Iron(II) transport prot 92.2 0.065 2.2E-06 52.4 2.8 21 384-404 7-27 (258)
No 1
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=7.6e-82 Score=724.32 Aligned_cols=589 Identities=28% Similarity=0.459 Sum_probs=484.9
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.||+.|++||||++|.++ ++ +.+||||++||+|+||||+||||+||++|++|+++|++|||+|++|+++..++..
T Consensus 300 m~lD~~t~~nLEl~~~~~~---~~-~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~ 375 (934)
T 3thx_A 300 MKLDIAAVRALNLFQGSVE---DT-TGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQT 375 (934)
T ss_dssp CEECHHHHHHTTSCC-------------CCHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred EEeCHHHHhhccccccCCC---CC-CCCCcHHHHhccCCCHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHH
Confidence 8999999999999998654 22 2478999999999999999999999999999999999999999999999988899
Q ss_pred HHH-HHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhh---HHHHHHH-H
Q 006859 81 LSQ-FLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQ---SFLLANI-Y 155 (628)
Q Consensus 81 l~~-~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~---s~lL~~i-~ 155 (628)
++. .|+++| |++|+++|+..++.. .+++..+++++..++.+.+.|.... ++++..+ .
T Consensus 376 l~~~~L~~i~-DleRl~~ri~~~~~~-----------------~~dl~~l~~~l~~~~~l~~~l~~~~~~~~~~l~~~~~ 437 (934)
T 3thx_A 376 LQEDLLRRFP-DLNRLAKKFQRQAAN-----------------LQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFV 437 (934)
T ss_dssp HHTTTGGGCC-CHHHHHHHHHTTCCC-----------------HHHHHHHHHHHTTHHHHHHHHHHTCCSSSTTGGGGTH
T ss_pred HHHHHhcCCC-CHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 997 699999 899999999877532 2578889999999999999887654 3332211 0
Q ss_pred HHhh-cchhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---
Q 006859 156 RSVC-ENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKL--- 231 (628)
Q Consensus 156 ~~~~-~~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~--- 231 (628)
..+. ..+.+..+.+.|+.+||++.. .++++.|++|+|++||.+|+.+.+..+++.++.+++++++++
T Consensus 438 ~~l~~~~~~l~~~~~~i~~~i~~~~~---------~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~ 508 (934)
T 3thx_A 438 TPLTDLRSDFSKFQEMIETTLDMDQV---------ENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPG 508 (934)
T ss_dssp HHHHHHHHHHHHHHHHHHTTBCTTGG---------GTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCBT
T ss_pred HHHHHHHhhHHHHHHHHHHHhCcchh---------hcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 1110 124567788889999988754 334688999999999999999999999999999999988887
Q ss_pred CCcccceecccceEEEEecccccC-CCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006859 232 PNLKLPFNNRQGFYLSIPHKDIQG-KLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIRED 310 (628)
Q Consensus 232 ~~l~~~~~~~~g~~i~v~~~~~~~-~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 310 (628)
+++++.|++..||+++++++.... ..|..|+.....++.++|+|++++++++++.++..++...+..++.++.+.+..+
T Consensus 509 ~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~ 588 (934)
T 3thx_A 509 KQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGY 588 (934)
T ss_dssp TTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGG
T ss_pred ceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999764221 2467899888777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccC--CCCEEEEcCccCccccc-ccceeecccccc-cCCceEE
Q 006859 311 VSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTE--NGPLAIDGGRHPILESI-HNDFIPNNIFIS-EAANMVI 386 (628)
Q Consensus 311 ~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~l~~~-~~~~~~~~~~l~-~~g~~~~ 386 (628)
.+.+.++.++++.||++ +|||.++.. ...+||+|.+.+ ...+.+..++||+++.. +..++|||++|+ +.|++++
T Consensus 589 ~~~l~~~~~~la~lD~l-~s~A~~a~~-~~~~~~rP~~~~~~~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ 666 (934)
T 3thx_A 589 VEPMQTLNDVLAQLDAV-VSFAHVSNG-APVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHI 666 (934)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHT-SSSCCBCCEEECTTSCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEE
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHh-ccCCCcCCeeccCCCcceEeecCccchhhhcCCceeecccceeecCCCeEEE
Confidence 99999999999999999 999998863 236899999987 55699999999999864 457999999999 5689999
Q ss_pred EEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEE
Q 006859 387 VTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIV 466 (628)
Q Consensus 387 i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~l 466 (628)
|+||||||||||||+++++.+++|+|+++|+..+.+++++.+++++|..+++..+.|+|+++|.+++.+++.+++|+++|
T Consensus 667 ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 667 ITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCc
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPH 545 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 545 (628)
|||||+|||+.++.++++++++++.+ .|++++++||++++..++++.+.+.++|+......+.+.|+|++.+|.+. .+
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~-~S 825 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCD-QS 825 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCC-CC
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCC-Cc
Confidence 99999999999999998999999986 59999999999999999999999999999999999999999999999987 58
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHhhhhhh------hhh-----HHH-HHHHHHHHHHHHHHHhhhccCCCHHHHH
Q 006859 546 YGLLLAEVAGLPSTVIETARSITSRITKKEVKRM------EIN-----CLQ-YKQIQMLYHAAQRLICLKYSNQDEESIR 613 (628)
Q Consensus 546 ~a~~la~~~g~p~~~l~~a~~~~~~l~~~~~~~~------~~~-----~~~-~h~~~~~~~~~~~~~~l~~g~~~~~~~~ 613 (628)
||+.+|+++|+|.+++++|+++++.|+....... ... ... ...-.....+.+++..++-.++.+....
T Consensus 826 ~gi~vA~~~glp~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~tp~eal 905 (934)
T 3thx_A 826 FGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSEENIT 905 (934)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTTTTC---------------CCSHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHHcCCcccCCHHHHH
Confidence 9999999999999999999999999986532100 000 000 0011122345566666665677777777
Q ss_pred HHHHHHHHHH
Q 006859 614 HALQNLKESF 623 (628)
Q Consensus 614 ~~l~~~~~~~ 623 (628)
+.|.++++..
T Consensus 906 ~~l~~l~~~~ 915 (934)
T 3thx_A 906 IKLKQLKAEV 915 (934)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777653
No 2
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=7.6e-80 Score=700.78 Aligned_cols=530 Identities=31% Similarity=0.494 Sum_probs=470.3
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.||+.|+++|||+++.++ + ++||||+++|+|+|+||+|+||+||++|++|+++|++||++|++|++ ++..
T Consensus 267 m~ld~~t~~~LEl~~~~~~----~--~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~---~~~~ 337 (800)
T 1wb9_A 267 IIMDAATRRNLEITQNLAG----G--AENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD---FTAG 337 (800)
T ss_dssp CEECHHHHHHTTSSSCTTS----C--STTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG---GHHH
T ss_pred EEecHHHHHhccCcccCCC----C--ccccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH---HHHH
Confidence 8899999999999998653 2 47899999999999999999999999999999999999999999998 6778
Q ss_pred HHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHhhc
Q 006859 81 LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE 160 (628)
Q Consensus 81 l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~lL~~i~~~~~~ 160 (628)
++..|+++| |++|+++|+..+... ..++..+++++..++.+++.+.+..++.|..+...+
T Consensus 338 l~~~L~~~~-Dler~l~r~~~~~~~-----------------~~dl~~l~~~l~~~~~l~~~l~~~~~~~L~~l~~~l-- 397 (800)
T 1wb9_A 338 LQPVLRQVG-DLERILARLALRTAR-----------------PRDLARMRHAFQQLPELRAQLETVDSAPVQALREKM-- 397 (800)
T ss_dssp HHHHHHTTC-SHHHHHHHHHHTCCC-----------------HHHHHHHHHHHTTHHHHHHHHHSCCCHHHHHHHHHH--
T ss_pred HHHHhcCCc-cHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc--
Confidence 899999999 899999999876322 257889999999999999999877778888775544
Q ss_pred chhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceec
Q 006859 161 NEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240 (628)
Q Consensus 161 ~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 240 (628)
+.++++.+.|+.+||++.... ....+.|++|+|++||.+|+.+.+..+++.++.+++++.++++++++.|+.
T Consensus 398 -~~~~~l~~~i~~~i~~~~~~~-------~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~~ 469 (800)
T 1wb9_A 398 -GEFAELRDLLERAIIDTPPVL-------VRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNA 469 (800)
T ss_dssp -CCCHHHHHHHHHHBCSSCCSC-------STTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEEET
T ss_pred -ccHHHHHHHHHHHhCcCchhh-------hhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecC
Confidence 457889999999999875311 123467899999999999999999999999999999888999999999999
Q ss_pred ccceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006859 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEV 320 (628)
Q Consensus 241 ~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 320 (628)
..||+++|+.... ..+|+.|+...+..+..+|.++++.++++++.++..++..++..++.++.+.+.++.+.+..+.+.
T Consensus 470 ~~gy~i~V~~~~~-~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ 548 (800)
T 1wb9_A 470 VHGYYIQISRGQS-HLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASA 548 (800)
T ss_dssp TTEEEEEEEHHHH-TTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred cceEEEEEecccc-ccCCcceEEeeeccCCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998753 469988988776666778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEcCccCccccc-ccceeecccccccCCceEEEEecCCCChhHHH
Q 006859 321 LCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYL 399 (628)
Q Consensus 321 ~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~l~~~-~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTll 399 (628)
+++||++ +|+|.++.. .+||+|.+.+...+.++.|+||+++.. ...+++||++|+++|++++|+|||||||||||
T Consensus 549 la~lD~l-~s~A~~a~~---~~~~~P~~~~~~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlL 624 (800)
T 1wb9_A 549 LAELDVL-VNLAERAYT---LNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM 624 (800)
T ss_dssp HHHHHHH-HHHHHHHHH---TTCBCCEECSSSCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEEEECCTTSSHHHHH
T ss_pred HHHHHHH-HHHHHHHHh---CCCcccEECCCCCEEEEeccccEEEccCCCceeeecccccCCCcEEEEECCCCCChHHHH
Confidence 9999999 999999876 789999999887899999999999853 45789999999988999999999999999999
Q ss_pred HHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH
Q 006859 400 QQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG 479 (628)
Q Consensus 400 k~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~ 479 (628)
|+|+|+.+++|+|+++|+....++++++++++++..+++..+.|+|+.+++++..++..+++|+++|+|||++||++.++
T Consensus 625 r~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~ 704 (800)
T 1wb9_A 625 RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDG 704 (800)
T ss_dssp HHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHH
T ss_pred HHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHH
Confidence 99999999999999999988778888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCH
Q 006859 480 FAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPS 558 (628)
Q Consensus 480 ~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~ 558 (628)
.++.+++++++.+ .+++++++||++++..+++..+.+.++||.+...++.++|+|++.+|.+. .+||+.+|+++|+|.
T Consensus 705 ~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~-~S~gi~vA~~~GlP~ 783 (800)
T 1wb9_A 705 LSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAAS-KSYGLAVAALAGVPK 783 (800)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCS-SCCHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCC-CcHHHHHHHHcCCCH
Confidence 9988889999987 59999999999999999999999999999999999999999999999997 589999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006859 559 TVIETARSITSRITK 573 (628)
Q Consensus 559 ~~l~~a~~~~~~l~~ 573 (628)
+++++|++++..|+.
T Consensus 784 ~vi~rA~~~l~~le~ 798 (800)
T 1wb9_A 784 EVIKRARQKLRELES 798 (800)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988863
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=2e-78 Score=693.66 Aligned_cols=533 Identities=29% Similarity=0.458 Sum_probs=434.5
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHh-CchhHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMS-NEQLFF 79 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~-~~~~~~ 79 (628)
|.||+.|++||||++|..+ |+ .+|||||+||+|+||||+||||+||++|++|+++|++|||+|++|+. +..++.
T Consensus 319 m~LD~~T~rnLEL~~~~~~---~~--~~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~ 393 (918)
T 3thx_B 319 MTINGTTLRNLEILQNQTD---MK--TKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFG 393 (918)
T ss_dssp CEECHHHHHHTTSSSCTTT---CS--STTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHH
T ss_pred EEECHHHHHhcCCcccCCC---CC--CCCcHHHHHhhCCChHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHH
Confidence 8999999999999998765 33 68999999999999999999999999999999999999999999984 556788
Q ss_pred HHHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHH-HHHHHHhh----hhHHHHHHH
Q 006859 80 GLSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALP-LLAKVLKD----AQSFLLANI 154 (628)
Q Consensus 80 ~l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~l~~~l~~----~~s~lL~~i 154 (628)
.++..|+++| |+||+++|+..++..+ .++..++++|..++ .+...+.. ..+++|..+
T Consensus 394 ~l~~~L~~i~-DleRll~ri~~~~~~~-----------------~dl~~l~~~l~~l~~~l~~~l~~~~~~~~~~lL~~~ 455 (918)
T 3thx_B 394 QIENHLRKLP-DIERGLCSIYHKKCST-----------------QEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTV 455 (918)
T ss_dssp HHHHTTTTCC-CHHHHHHHHHTTCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHccCc-cHHHHHHHhccCcCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHH
Confidence 8999999999 9999999999875332 35666777776665 45444432 235666555
Q ss_pred HHHhhcchhHHHHHHHHHhhhccccccccchhhhcccccccccCC-CChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Q 006859 155 YRSVCENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGG-IDGLLDIARRSFCDTSEAVHNLANKYREELKLPN 233 (628)
Q Consensus 155 ~~~~~~~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g-~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (628)
...+ +.+......+.+.|+++.... ....-.++.. ..+.++..|+.+.++.+++++..++++..++.+
T Consensus 456 ~~~~---~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i~~~- 524 (918)
T 3thx_B 456 ILEI---PELLSPVEHYLKILNEQAAKV-------GDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNP- 524 (918)
T ss_dssp HTHH---HHHTGGGHHHHTTSCHHHHHH-------TCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHhh---hhhHHHHHHHHHHHHHhhhhc-------CCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-
Confidence 3222 111111223333444332100 0000011121 246788888888888888888887777666554
Q ss_pred cccceecccc--eEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006859 234 LKLPFNNRQG--FYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDV 311 (628)
Q Consensus 234 l~~~~~~~~g--~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 311 (628)
++.|+...| |+++|+... ...+|+.|+..+.++++.+|.|++++++++++.++.+++...+...+.++...+.++.
T Consensus 525 -~~~~~~~~g~~y~iev~~~~-~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~ 602 (918)
T 3thx_B 525 -SAQYVTVSGQEFMIEIKNSA-VSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHY 602 (918)
T ss_dssp -TCCCEEETTEEEEEEEETTS-GGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGH
T ss_pred -cceeEeecCCEEEEEEcHHH-HhhCCCeEEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 999998765 3469999999999999999999999999999999888887778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEcCccCccccc---ccceeecccccc-cCCceEEE
Q 006859 312 SVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESI---HNDFIPNNIFIS-EAANMVIV 387 (628)
Q Consensus 312 ~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~l~~~---~~~~~~~~~~l~-~~g~~~~i 387 (628)
..+..+.+.+++||++ +|+|.++.. .+||+|.+.+...+.++.|+||+++.. ...++|||++|+ ++|++++|
T Consensus 603 ~~l~~~~~~la~lD~l-~s~A~~a~~---~~~~~P~~~~~~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~I 678 (918)
T 3thx_B 603 HSLCKAVHHLATVDCI-FSLAKVAKQ---GDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMII 678 (918)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHTS---SSCBCCEEESSCEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEE
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhc---CCCcCCcccCCCcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEE
Confidence 9999999999999999 999999875 789999999888899999999999742 257999999998 67999999
Q ss_pred EecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEE
Q 006859 388 TGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVM 467 (628)
Q Consensus 388 ~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~ll 467 (628)
+||||||||||||+++++.+++|+|+++|+..+.+++++.+++++|..+++..+.|+|+++|++++.+++.+++|+++||
T Consensus 679 tGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLL 758 (918)
T 3thx_B 679 TGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVIL 758 (918)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEE
Confidence 99999999999999999999999999999998888888889999999999999999999999999999999999999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcc-eeEEEEEEEEe--------------CCeee
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPN-VKILHFYVVIR--------------NNRLD 531 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~-v~~~~~~~~~~--------------~~~~~ 531 (628)
|||++|||+.++.++.+++++++.+ .|++++++||++++.++++.++. |.++||.+..+ ++.++
T Consensus 759 DEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~ 838 (918)
T 3thx_B 759 DELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVT 838 (918)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC-----------------CC
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCcee
Confidence 9999999999999999899999865 69999999999999999998885 99999998654 35799
Q ss_pred EeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHh
Q 006859 532 FKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKK 574 (628)
Q Consensus 532 ~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~~~~l~~~ 574 (628)
|+|++.+|.+. .+||+.+|+++|+|.+++++|+++++.|+..
T Consensus 839 flykl~~G~~~-~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~ 880 (918)
T 3thx_B 839 FLYQITRGIAA-RSYGLNVAKLADVPGEILKKAAHKSKELEGL 880 (918)
T ss_dssp EEEEEEESCCC-TTTTHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeeeeccCCCC-CcHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 99999999998 5899999999999999999999999988764
No 4
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=1.6e-77 Score=697.27 Aligned_cols=558 Identities=26% Similarity=0.386 Sum_probs=450.2
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.||++|++||||++|..+ |+ .+|||||+||+|+||||+||||+||++||+|+++|++|||+|++|++++.++..
T Consensus 395 m~LD~~T~~nLEl~~~~~~---g~--~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~ 469 (1022)
T 2o8b_B 395 MVLDAVTLNNLEIFLNGTN---GS--TEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISE 469 (1022)
T ss_dssp CBCCHHHHHHTTCSSCCSS---SS--CCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred EEeCHHHHHhhcCCccCCC---CC--CCCcHHHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHH
Confidence 8999999999999998765 43 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccHHHHHhhHhc-CCC-----CccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhh----hhHHH
Q 006859 81 LSQFLRKFPKETDRVLCHFCF-KPK-----KVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKD----AQSFL 150 (628)
Q Consensus 81 l~~~L~~~~~Dlerll~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~----~~s~l 150 (628)
++..|+++| |+||+++|++. +++ .+....+...........+.+++.+.+++..++.+...+.+ ..+++
T Consensus 470 l~~~L~~i~-DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~l 548 (1022)
T 2o8b_B 470 VVELLKKLP-DLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKI 548 (1022)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHhcCc-cHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHH
Confidence 999999999 99999999987 321 01001111111111122345566666667777878777764 44677
Q ss_pred HHHHHHHh-----hcchhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHH
Q 006859 151 LANIYRSV-----CENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKY 225 (628)
Q Consensus 151 L~~i~~~~-----~~~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~ 225 (628)
|..+.... ...+.+.++.+.|..+||++.. +.++.+.+++|++++||.+|+.+.+..+++.++.+++
T Consensus 549 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~--------~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~ 620 (1022)
T 2o8b_B 549 LKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKA--------RKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQ 620 (1022)
T ss_dssp HHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHH--------HHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHhCchhh--------hcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77663211 1234566777778889987633 3445667799999999999999999999999999888
Q ss_pred HHhcCCCCcccceecccceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006859 226 REELKLPNLKLPFNNRQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVD 305 (628)
Q Consensus 226 ~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~ 305 (628)
++.++++++++......+|+++++.......+|+.|+..++.++..+|.|+++.+++.++.++..++...+..+..++.+
T Consensus 621 ~~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~ 700 (1022)
T 2o8b_B 621 RNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFY 700 (1022)
T ss_dssp GGGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCceeEEEecCceEEEEEehhhhcccCCCceEEeeeccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899888877667778899999986543238999988877777788999999999999998888877777888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccc----CCCCEEEEcCccCcccc-c-ccceeecccccc
Q 006859 306 AIREDVSVLTLLAEVLCLLDMIVNSFAHTISTKPVDRYTRPHFT----ENGPLAIDGGRHPILES-I-HNDFIPNNIFIS 379 (628)
Q Consensus 306 ~~~~~~~~l~~~~~~~~~lD~~~~s~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~l~~-~-~~~~~~~~~~l~ 379 (628)
.+.++...+..+.+.++.||++ +|+|.++.. ...+||+|.+. +...+.+..|+||++.. . ...++|||++|+
T Consensus 701 ~~~~~~~~l~~~~~~la~lD~l-~s~A~~a~~-~~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~ 778 (1022)
T 2o8b_B 701 NFDKNYKDWQSAVECIAVLDVL-LCLANYSRG-GDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIG 778 (1022)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHH-HHHHHHTTC-SSSCEECCEECCTTTSCCCEEEEEECCCC------CCCCCCEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhHHHHHhh-ccCCccCCccccCCCCCceEEEEeccccEEEEEecCCceEeeeeeec
Confidence 8999999999999999999999 999998862 13789999997 44569999999999874 2 346899999998
Q ss_pred -cC-------CceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHH
Q 006859 380 -EA-------ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKE 451 (628)
Q Consensus 380 -~~-------g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~ 451 (628)
+. |++++|+||||||||||||+++.+.+++|+|+|||+....+++++.+++++|..+.+..+.|+|+++|++
T Consensus 779 ~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~ 858 (1022)
T 2o8b_B 779 CEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 858 (1022)
T ss_dssp CCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHH
T ss_pred cccccccCCCCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHH
Confidence 33 7999999999999999999996667899999999999888888889999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhhCcceeEEEEEEEE-----
Q 006859 452 TAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNVKILHFYVVI----- 525 (628)
Q Consensus 452 ~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~----- 525 (628)
++.++..+++|+|+||||||+||++.++.++++++++++.+. |++++++||++++.......+.+.++||.+..
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE 938 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEEEEEEEC------
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeecCeEEEEEecCcc
Confidence 999999999999999999999999999988889999999876 99999999999988876666778888887533
Q ss_pred --eCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHhh
Q 006859 526 --RNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTVIETARSITSRITKKE 575 (628)
Q Consensus 526 --~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~l~~a~~~~~~l~~~~ 575 (628)
.++.+.|+|++.+|.+. .+||+++|+++|+|.+++++|++++..|+...
T Consensus 939 ~~~~~~l~~ly~l~~G~~~-~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~~ 989 (1022)
T 2o8b_B 939 DPSQETITFLYKFIKGACP-KSYGFNAARLANLPEEVIQKGHRKAREFEKMN 989 (1022)
T ss_dssp -------CEEEEEESSCCC-CCHHHHHHHHTTCCHHHHHHHHHHHHHTTSST
T ss_pred cCCCCceEEEeeecCCCCC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 35679999999999987 48999999999999999999999999987643
No 5
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=1.8e-75 Score=660.96 Aligned_cols=514 Identities=31% Similarity=0.504 Sum_probs=454.1
Q ss_pred CccChhhHHhcccccCCccccCCCCCCcCchhhhhcccCCcchHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCchhHHH
Q 006859 1 MNIDATSVRNLEIIEPLHSALWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFG 80 (628)
Q Consensus 1 M~iD~~t~~~LEi~~~~~~~~~g~~~~~~SL~~~ln~t~T~~G~RlLr~wll~Pl~d~~~I~~Rld~V~~l~~~~~~~~~ 80 (628)
|.||+.|+++|||++|.+ | +||||+++|+|+|+||+|+||+||++|++|+++|++||++|++|.+++.++..
T Consensus 250 m~lD~~t~~~LEl~~~~~----~----~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~ 321 (765)
T 1ewq_A 250 MRLPEATLRALEVFEPLR----G----QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREG 321 (765)
T ss_dssp CBCCHHHHHHTTSSSCSS----S----CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred EEecHHHHHhCcCccCCC----c----cchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHH
Confidence 899999999999998753 2 58999999999999999999999999999999999999999999999888889
Q ss_pred HHHHHhcCCccHHHHHhhHhcCCCCccccccchhhhhhhHHhHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHHHHhhc
Q 006859 81 LSQFLRKFPKETDRVLCHFCFKPKKVTSKVLDVDNAKKSQTLISSIILLKTALDALPLLAKVLKDAQSFLLANIYRSVCE 160 (628)
Q Consensus 81 l~~~L~~~~~Dlerll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~l~~~l~~~~s~lL~~i~~~~~~ 160 (628)
++..|++++ |++|++.++..+... ..++..+++++..++.+++.+. + . ..
T Consensus 322 l~~~L~~~~-Dler~l~r~~~~~~~-----------------~~dl~~l~~~l~~~~~l~~~l~---------l-~--~~ 371 (765)
T 1ewq_A 322 VRRLLYRLA-DLERLATRLELGRAS-----------------PKDLGALRRSLQILPELRALLG---------E-E--VG 371 (765)
T ss_dssp HHHHHTTCC-CHHHHHHHHHTTCCC-----------------HHHHHHHHHHHHHHHHHHHHHC---------T-T--SC
T ss_pred HHHHHhcCC-CHHHHHHHHHcCCCC-----------------HHHHHHHHHHHHHHHHHHHHHH---------H-H--hc
Confidence 999999998 899999999876421 2568889999999888877664 1 1 12
Q ss_pred chhHHHHHHHHHhhhccccccccchhhhcccccccccCCCChHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcccceec
Q 006859 161 NEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAIKGGIDGLLDIARRSFCDTSEAVHNLANKYREELKLPNLKLPFNN 240 (628)
Q Consensus 161 ~~~~~~l~~~I~~~id~~~~~~~~~~~~~~~~~~~ik~g~d~~LD~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 240 (628)
.+.++.+.+.|+.+||++.... ....+.|++|+|++||.+|+.+.+..+++.++.+++++..+++++++.|+.
T Consensus 372 l~~~~~l~~~i~~~i~~~~~~~-------~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~~ 444 (765)
T 1ewq_A 372 LPDLSPLKEELEAALVEDPPLK-------VSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNA 444 (765)
T ss_dssp CCCCHHHHHHHHHHBCSSCCSC-------TTSSCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEET
T ss_pred cccHHHHHHHHHHHhcccchhh-------hccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEecc
Confidence 2456788899999998874311 122356899999999999999999999999999999888999999999999
Q ss_pred ccceEEEEecccccCCCCcceEEEeeccceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006859 241 RQGFYLSIPHKDIQGKLPSTFIQVVKHGNNIHCSTLELASLNVRNKSAAGECYIRTEICLEALVDAIREDVSVLTLLAEV 320 (628)
Q Consensus 241 ~~g~~i~v~~~~~~~~~p~~~~~~~~~g~~~~~~t~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 320 (628)
..||+++++.... ..+|+.|+...+..+..+|.++++.++++++.++..++..++..++.++.+.+..+.+.+..+.++
T Consensus 445 ~~gy~i~v~~~~~-~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~ 523 (765)
T 1ewq_A 445 VFGYYLEVTRPYY-ERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARI 523 (765)
T ss_dssp TTEEEEEEEGGGG-GGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ceeEEEEeehHhh-hcCCcceEEEEeccCCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998763 469998988776666778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHH
Q 006859 321 LCLLDMIVNSFAHTISTKPVDRYTRPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQ 400 (628)
Q Consensus 321 ~~~lD~~~~s~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk 400 (628)
++.||++ .|+|.++.. .+||+|.+ .+.+.+.+++||+++. ...+++||++|+ |++++|+||||||||||||
T Consensus 524 la~LD~l-~s~a~~a~~---~~~~~P~~--~~~i~i~~~rHP~le~-~~~~vl~disl~--g~i~~I~GpNGsGKSTlLr 594 (765)
T 1ewq_A 524 LAELDVY-AALAEVAVR---YGYVRPRF--GDRLQIRAGRHPVVER-RTEFVPNDLEMA--HELVLITGPNMAGKSTFLR 594 (765)
T ss_dssp HHHHHHH-HHHHHHHHH---HTCBCCEE--SSSEEEEEECCTTGGG-TSCCCCEEEEES--SCEEEEESCSSSSHHHHHH
T ss_pred HHHHHHH-HhhHHHHHh---CCceeecc--CCcEEEEEeECceEcc-CCceEeeeccCC--CcEEEEECCCCCChHHHHH
Confidence 9999999 999999875 78999999 4569999999999985 457899999998 9999999999999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH
Q 006859 401 QVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF 480 (628)
Q Consensus 401 ~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~ 480 (628)
+|+|+.+++|+|+++|+....++++++++++++..+++..+.|+|+.++.+++.++..+++|+++|+||||+||++.|+.
T Consensus 595 ~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~ 674 (765)
T 1ewq_A 595 QTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV 674 (765)
T ss_dssp HHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH
T ss_pred HHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH
Confidence 99999999999999999877788888888999999999999999999888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHCCCCHHH
Q 006859 481 AIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVAGLPSTV 560 (628)
Q Consensus 481 ~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~g~p~~~ 560 (628)
+..+++++.+.+.|++++++||++++..++ .+.+.++||.+...++.++|+|++.+|.+. .+||+.+|+++|+|.++
T Consensus 675 ~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~-~Sygi~vA~~aGlP~~V 751 (765)
T 1ewq_A 675 AIATAVAEALHERRAYTLFATHYFELTALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPAS-KSYGVEVAAMAGLPKEV 751 (765)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCCHHHHTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCS-SCCHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCC-CchHHHHHHHcCCCHHH
Confidence 877889998888899999999999888766 789999999999888999999999999997 58999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006859 561 IETARSITSRIT 572 (628)
Q Consensus 561 l~~a~~~~~~l~ 572 (628)
+++|++++.+|+
T Consensus 752 I~rA~~~l~~le 763 (765)
T 1ewq_A 752 VARARALLQAMA 763 (765)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.89 E-value=4.3e-23 Score=206.30 Aligned_cols=165 Identities=12% Similarity=0.118 Sum_probs=125.2
Q ss_pred CCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 350 ENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 350 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
+..++++.|+++++|+++++++. +|++++|+||||||||||+|+|+|+. ..
T Consensus 13 ~~~~l~~~~~~~~vL~~vsl~i~--------~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 13 EASHLHYHVQQQALINDVSLHIA--------SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEE--------TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred EEEeEEEEeCCeeEEEeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHh
Confidence 33458999999999999999999 99999999999999999999999953 22
Q ss_pred HhcCCcccCCCCC---c-------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-C-----
Q 006859 409 AQIGCYVPAHFST---I-------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-S----- 460 (628)
Q Consensus 409 ~~~g~~v~~~~~~---i-------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~----- 460 (628)
..+| ++|+.... . .....++..+++.+...+..+.+|+|++|+..+++++ .
T Consensus 85 ~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 85 RTRA-VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp HHEE-EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred heEE-EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 3355 55543311 0 1234567788888888888999999999999888877 5
Q ss_pred -CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 461 -ERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 461 -~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+|+++|+|||++|+|+.....+.. ++..+.+ .+.+++++||+.+ .....++++ +.+.+|+++.
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~-~l~~l~~~~~~tvi~vtHdl~--~~~~~~d~v------~vl~~G~i~~ 228 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLR-LLRQLTRQEPLAVCCVLHDLN--LAALYADRI------MLLAQGKLVA 228 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHH-HHHHHHHHSSEEEEEECSCHH--HHHHHCSEE------EEEETTEEEE
T ss_pred CCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHcCCCEEEEEEcCHH--HHHHhCCEE------EEEECCEEEE
Confidence 899999999999999876666444 4455544 4679999999954 444445555 4455666654
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.89 E-value=6.8e-23 Score=211.52 Aligned_cols=164 Identities=17% Similarity=0.200 Sum_probs=129.0
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H----------H
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I----------L 408 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~----------~ 408 (628)
.++++.|++.++|+++++++. +|++++|+||||||||||||+|+|+. + .
T Consensus 8 ~~ls~~y~~~~~L~~vsl~i~--------~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~ 79 (359)
T 3fvq_A 8 GHLSKSFQNTPVLNDISLSLD--------PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEEC--------TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGG
T ss_pred EeEEEEECCEEEEEeeEEEEc--------CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhh
Confidence 458999999999999999999 99999999999999999999999954 1 1
Q ss_pred HhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc
Q 006859 409 AQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS 463 (628)
Q Consensus 409 ~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~ 463 (628)
..+| |||++...++ .+..++..+++.+..++.++.+|+|++|+..+++++ .+|+
T Consensus 80 r~ig-~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 80 RRLG-YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp SCCE-EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEE-EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2355 6665543221 245667888999999999999999999988888776 8899
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 464 LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 464 l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++|||||++|+|+.....+...+.+...+.|.|++++||+ +.+....++++ +++.+|++..
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd--~~ea~~~aDri------~vl~~G~i~~ 219 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD--REEALQYADRI------AVMKQGRILQ 219 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC--HHHHHHHCSEE------EEEETTEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC--HHHHHHHCCEE------EEEECCEEEE
Confidence 9999999999998777766555666666789999999999 44444555655 3445665543
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-24 Score=240.48 Aligned_cols=136 Identities=14% Similarity=0.098 Sum_probs=103.2
Q ss_pred CEEEEcCccC-cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCc---------
Q 006859 353 PLAIDGGRHP-ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTI--------- 422 (628)
Q Consensus 353 ~l~~~~~~~~-~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i--------- 422 (628)
.+..+|+... .+..+. .+. +|++++|+||||||||||||+|+| +++++.|.+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~--------~Gei~~LvGpNGaGKSTLLkiL~G---------ll~P~~G~i~~~~~~~~~ 143 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPR--------PGQVLGLVGTNGIGKSTALKILAG---------KQKPNLGRFDDPPEWQEI 143 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCC--------TTSEEEEECCTTSSHHHHHHHHHT---------SSCCCTTTTCCSSCHHHH
T ss_pred CeEEEECCCceeecCCC-CCC--------CCCEEEEECCCCChHHHHHHHHhc---------CCCCCCceEecccchhhh
Confidence 4777777543 344333 344 899999999999999999999999 333333322
Q ss_pred --------------------------------------------------------hHHHHHHhhcCCccccccCcCchH
Q 006859 423 --------------------------------------------------------RVVDRIFTRMGTVDNLESNSSTFM 446 (628)
Q Consensus 423 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~s~~s 446 (628)
.....++..+|+.+..++.++++|
T Consensus 144 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 223 (608)
T 3j16_B 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLS 223 (608)
T ss_dssp HHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCC
T ss_pred hheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCC
Confidence 123456677888888889999999
Q ss_pred HHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 447 TEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 447 ~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
+|++|+..+++++ .+|++++||||++|+|+.....+ ..+++.+.+.|.+++++||+++..
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l-~~~l~~l~~~g~tvi~vtHdl~~~ 284 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNA-AQIIRSLLAPTKYVICVEHDLSVL 284 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHH-HHHHHGGGTTTCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHH-HHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999998888776 88999999999999998665553 345566666789999999996543
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=1.8e-22 Score=197.09 Aligned_cols=162 Identities=15% Similarity=0.176 Sum_probs=124.7
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------------H
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------------I 407 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------------~ 407 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 8 ~~l~~~y~~~~~l~~vsl~i~--------~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (224)
T 2pcj_A 8 ENIKKVIRGYEILKGISLSVK--------KGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79 (224)
T ss_dssp EEEEEEETTEEEEEEEEEEEE--------TTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHH
T ss_pred EeEEEEECCEeeEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHH
Confidence 458899998899999999999 99999999999999999999999953 1
Q ss_pred H-HhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 408 L-AQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 408 ~-~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
. .++| |+|+....++ .+..++..+|+.+...+.++.+|+|++|+..+++++ .+
T Consensus 80 ~~~~i~-~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 80 RNRKLG-FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred HhCcEE-EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 1 4577 7776542211 123456778888888889999999999988888877 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|+++++|||++|+|+.....+. .++..+.+.|.+++++||+.+.. ..++++ +.+.+|++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~-~~l~~l~~~g~tvi~vtHd~~~~---~~~d~v------~~l~~G~i~~ 219 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVM-DIFLKINEGGTSIVMVTHERELA---ELTHRT------LEMKDGKVVG 219 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEECSCHHHH---TTSSEE------EEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEcCCHHHH---HhCCEE------EEEECCEEEE
Confidence 9999999999999986655544 44555555599999999995543 445555 3345666553
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=1.4e-22 Score=201.32 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=126.8
Q ss_pred cccccCCCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------
Q 006859 345 RPHFTENGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------ 406 (628)
Q Consensus 345 ~p~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------ 406 (628)
.|.+.- .++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 13 ~~~l~i-~~l~~~y~~~~vl~~vsl~i~--------~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 13 MGAVVV-KDLRKRIGKKEILKGISFEIE--------EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp -CCEEE-EEEEEEETTEEEEEEEEEEEC--------TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH
T ss_pred CCeEEE-EEEEEEECCEEEEEeeEEEEc--------CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccH
Confidence 344432 348999998899999999999 99999999999999999999999953
Q ss_pred --HHHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 407 --ILAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 407 --~~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
+..++| |+|+....++ .+..++..+|+.+...+.++.+|+|++|+..+++++
T Consensus 84 ~~~~~~i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 84 HEVRKLIS-YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp HHHHTTEE-EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred HHHhhcEE-EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 223566 7776542211 123456678888888889999999999988887765
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
.+|++++||||++|+|+.....+. .++..+.+.|.+++++||+. ..+...++++ +.+.+|++.+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g~tiiivtHd~--~~~~~~~d~v------~~l~~G~i~~ 226 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVR-KILKQASQEGLTILVSSHNM--LEVEFLCDRI------ALIHNGTIVE 226 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEECCH--HHHTTTCSEE------EEEETTEEEE
T ss_pred cCCCEEEEeCCccccCHHHHHHHH-HHHHHHHhCCCEEEEEcCCH--HHHHHHCCEE------EEEECCEEEE
Confidence 889999999999999987666544 44555566689999999994 4455555655 3445666553
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.89 E-value=1.4e-22 Score=209.16 Aligned_cols=165 Identities=20% Similarity=0.200 Sum_probs=127.6
Q ss_pred CCEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------
Q 006859 352 GPLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------- 406 (628)
Q Consensus 352 ~~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------- 406 (628)
.++++.|+. .++|+++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 28 ~~ls~~y~~~~~~~~aL~~vsl~i~--------~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 28 SNITKVFHQGTRTIQALNNVSLHVP--------AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEEC--------TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred EeEEEEeCCCCCCeEEEEeeEEEEc--------CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 357888853 468999999998 99999999999999999999999954
Q ss_pred ---HHHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 407 ---ILAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 407 ---~~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
+..++| |+|+....++ .+..++..+|+.+..++.++.+|+|++|+..|++++
T Consensus 100 ~~~~r~~Ig-~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 100 LTKARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHTTEE-EECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHhCcEE-EEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 134577 7877653221 234567788999889999999999999999999887
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEee
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFKF 534 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 534 (628)
.+|+++|+|||++|+|+.....+.. ++..+. +.|.|++++||++ ......+++| +++.+|+++...
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~-lL~~l~~~~g~Tii~vTHdl--~~~~~~aDrv------~vl~~G~iv~~g 246 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILE-LLKDINRRLGLTILLITHEM--DVVKRICDCV------AVISNGELIEQD 246 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHSCCEEEEEESCH--HHHHHHCSEE------EEEETTEEEECC
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEecCH--HHHHHhCCEE------EEEECCEEEEEc
Confidence 7899999999999999877666444 445554 5699999999994 4444555665 455667666543
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.88 E-value=1.7e-22 Score=201.36 Aligned_cols=164 Identities=17% Similarity=0.219 Sum_probs=124.3
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------H
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-----------------------I 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-----------------------~ 407 (628)
..++++.|+++++|+++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 27 i~~l~~~y~~~~vL~~vsl~i~--------~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 98 (263)
T 2olj_A 27 VHQLKKSFGSLEVLKGINVHIR--------EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEEC--------TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHH
T ss_pred EEeEEEEECCEEEEEeeEEEEc--------CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHH
Confidence 3458899998899999999999 99999999999999999999999953 1
Q ss_pred HHhcCCcccCCCCCch-------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 408 LAQIGCYVPAHFSTIR-------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i~-------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
..++| |+|+....++ .+..++..+++.+..++.++++|+|++|+..+++++ .+
T Consensus 99 ~~~i~-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~ 177 (263)
T 2olj_A 99 REEVG-MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAME 177 (263)
T ss_dssp HHHEE-EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEE-EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCC
Confidence 23467 7776532111 123456678888888889999999999988887765 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|+++|||||++|+|+.....+. .++..+.+.|.+++++||+.+ .+...++++ +.+++|+++.
T Consensus 178 p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~g~tvi~vtHd~~--~~~~~~d~v------~~l~~G~i~~ 239 (263)
T 2olj_A 178 PKIMLFDEPTSALDPEMVGEVL-SVMKQLANEGMTMVVVTHEMG--FAREVGDRV------LFMDGGYIIE 239 (263)
T ss_dssp CSEEEEESTTTTSCHHHHHHHH-HHHHHHHHTTCEEEEECSCHH--HHHHHCSEE------EEEETTEEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCEEEEEcCCHH--HHHHhCCEE------EEEECCEEEE
Confidence 9999999999999986665544 455555555999999999954 444445554 3445666653
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.88 E-value=8.9e-23 Score=200.59 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=120.9
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------- 406 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------- 406 (628)
++++.|+. +++|+++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 6 ~l~~~y~~~~~~~~~L~~isl~i~--------~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 6 NVTKTYKMGEEIIYALKNVNLNIK--------EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEC--------TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred EEEEEeCCCCcceeeEEeeeEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence 47778863 468999999999 99999999999999999999999954
Q ss_pred --H-HHhcCCcccCCCCCch---H------------------------HHHHHhhcCCcccc-ccCcCchHHHHHHHHHH
Q 006859 407 --I-LAQIGCYVPAHFSTIR---V------------------------VDRIFTRMGTVDNL-ESNSSTFMTEMKETAFV 455 (628)
Q Consensus 407 --~-~~~~g~~v~~~~~~i~---~------------------------~~~~~~~~~~~~~~-~~~~s~~s~~~~~~~~i 455 (628)
. ..++| |+|+....++ + ....+..+++.+.. .+.++.+|+|++|+..+
T Consensus 78 ~~~~~~~i~-~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 78 TKIRRDKIG-FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHHHHHEE-EECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred HHHhhccEE-EEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence 1 12477 7776543211 1 22345666776654 77899999999998888
Q ss_pred HHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEe
Q 006859 456 MQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533 (628)
Q Consensus 456 ~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 533 (628)
++++ .+|+++|+|||++|+|+.....+.. ++..+.+ .|.+++++||+.++. ..++++ +.+++|++...
T Consensus 157 Aral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~---~~~d~i------~~l~~G~i~~~ 226 (235)
T 3tif_A 157 ARALANNPPIILADQPTWALDSKTGEKIMQ-LLKKLNEEDGKTVVVVTHDINVA---RFGERI------IYLKDGEVERE 226 (235)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHHHCCEEEEECSCHHHH---TTSSEE------EEEETTEEEEE
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHHcCCEEEEEcCCHHHH---HhCCEE------EEEECCEEEEE
Confidence 8776 8899999999999999876666444 4444544 599999999996643 445655 44567776654
Q ss_pred e
Q 006859 534 F 534 (628)
Q Consensus 534 ~ 534 (628)
.
T Consensus 227 ~ 227 (235)
T 3tif_A 227 E 227 (235)
T ss_dssp E
T ss_pred c
Confidence 3
No 14
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.88 E-value=1.6e-22 Score=210.23 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=126.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIG 412 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g 412 (628)
.++++.|++.++|+++++++. +|++++|+||||||||||||+|+|+. ....+|
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~--------~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig 78 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIH--------EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVG 78 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEEC--------TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEE
T ss_pred EeEEEEECCEEEEeeeEEEEC--------CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEE
Confidence 358999999999999999999 99999999999999999999999954 112355
Q ss_pred CcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
+|+++...++ .+..++..+++.+..++.++.+|+|++|+..+++++ .+|+++||
T Consensus 79 -~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 79 -MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp -EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred -EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5655543221 234567788999999999999999999999998877 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|||++++|+.....+...+.+...+.|.|++++||+ +.+....++++ +++.+|++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd--~~ea~~~aDri------~vl~~G~i~~ 214 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD--QVEAMTLADKI------VVLDAGRVAQ 214 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC--HHHHHHHCSEE------EEEETTEEEE
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC--HHHHHHhCCEE------EEEECCEEEE
Confidence 999999998766665444433334569999999999 44555555665 3445565543
No 15
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.88 E-value=1.3e-22 Score=203.32 Aligned_cols=164 Identities=19% Similarity=0.190 Sum_probs=125.1
Q ss_pred CCCEEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-----------------------
Q 006859 351 NGPLAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------- 406 (628)
Q Consensus 351 ~~~l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------- 406 (628)
-.++++.|++ .++|+++++++. +|++++|+||||||||||+|+|+|+.
T Consensus 10 i~~ls~~y~~~~~~L~~isl~i~--------~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 81 (275)
T 3gfo_A 10 VEELNYNYSDGTHALKGINMNIK--------RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81 (275)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEE--------TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHH
T ss_pred EEEEEEEECCCCeEEEeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHH
Confidence 3458999965 569999999999 99999999999999999999999953
Q ss_pred HHHhcCCcccCCCC-C---ch---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 407 ILAQIGCYVPAHFS-T---IR---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 407 ~~~~~g~~v~~~~~-~---i~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
+..++| |+|+... . .. .+..++..+|+.+...+.++++|+|++|+..+++++ .
T Consensus 82 ~~~~ig-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 82 LRESIG-IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp HHHSEE-EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT
T ss_pred HhCcEE-EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 234577 7776531 1 11 234567788888888899999999999988888775 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+|+++|+|||++|+|+.....+.. ++..+. +.|.|++++||+++. ....++++ +.+.+|++++
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~-~l~~l~~~~g~tvi~vtHdl~~--~~~~~drv------~~l~~G~i~~ 224 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMK-LLVEMQKELGITIIIATHDIDI--VPLYCDNV------FVMKEGRVIL 224 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHHCCEEEEEESCCSS--GGGGCSEE------EEEETTEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHH-HHHHHHhhCCCEEEEEecCHHH--HHHhCCEE------EEEECCEEEE
Confidence 899999999999999876666444 555555 459999999999553 33445555 4456666654
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=2.5e-22 Score=198.12 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=121.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------H-HH
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------I-LA 409 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~-~~ 409 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. . ..
T Consensus 10 ~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 10 QSLHVYYGAIHAIKGIDLKVP--------RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEETTEEEEEEEEEEEE--------TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred EeEEEEECCeeEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 458899998899999999999 99999999999999999999999953 1 12
Q ss_pred hcCCcccCCCCCc---h--------------------HHHHHHhhc-CCccccccCcCchHHHHHHHHHHHHhC-CCCcE
Q 006859 410 QIGCYVPAHFSTI---R--------------------VVDRIFTRM-GTVDNLESNSSTFMTEMKETAFVMQNV-SERSL 464 (628)
Q Consensus 410 ~~g~~v~~~~~~i---~--------------------~~~~~~~~~-~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l 464 (628)
++| |+|+....+ . ....++..+ ++.+...+..+++|+|++|+..+++++ .+|++
T Consensus 82 ~i~-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l 160 (240)
T 1ji0_A 82 GIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL 160 (240)
T ss_dssp TEE-EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred CEE-EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 366 777653211 1 123445556 376777788899999999988887765 88999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 465 IVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 465 ~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++||||++|+|+.....+.. ++..+.+.|.+++++||+.+ .+...++++ +.+.+|++..
T Consensus 161 llLDEPts~LD~~~~~~l~~-~l~~~~~~g~tvi~vtHd~~--~~~~~~d~v------~~l~~G~i~~ 219 (240)
T 1ji0_A 161 LMMDEPSLGLAPILVSEVFE-VIQKINQEGTTILLVEQNAL--GALKVAHYG------YVLETGQIVL 219 (240)
T ss_dssp EEEECTTTTCCHHHHHHHHH-HHHHHHHTTCCEEEEESCHH--HHHHHCSEE------EEEETTEEEE
T ss_pred EEEcCCcccCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHH--HHHHhCCEE------EEEECCEEEE
Confidence 99999999999866665444 44555557899999999953 333444544 3445666553
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.88 E-value=2.7e-22 Score=200.34 Aligned_cols=164 Identities=15% Similarity=0.192 Sum_probs=124.1
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H----------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I---------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~---------- 407 (628)
..++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 9 i~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (262)
T 1b0u_A 9 VIDLHKRYGGHEVLKGVSLQAR--------AGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80 (262)
T ss_dssp EEEEEEEETTEEEEEEEEEEEC--------TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSE
T ss_pred EeeEEEEECCEEEEEeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccc
Confidence 3458899998899999999999 99999999999999999999999953 1
Q ss_pred -----------HHhcCCcccCCCCCch-------------------------HHHHHHhhcCCccc-cccCcCchHHHHH
Q 006859 408 -----------LAQIGCYVPAHFSTIR-------------------------VVDRIFTRMGTVDN-LESNSSTFMTEMK 450 (628)
Q Consensus 408 -----------~~~~g~~v~~~~~~i~-------------------------~~~~~~~~~~~~~~-~~~~~s~~s~~~~ 450 (628)
..++| |+|+....++ .+..++..+|+.+. ..+.++.+|+|++
T Consensus 81 ~~~~~~~~~~~~~~i~-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~ 159 (262)
T 1b0u_A 81 KVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ 159 (262)
T ss_dssp EESCHHHHHHHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHH
T ss_pred cccChhhHHHHhcceE-EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHH
Confidence 12466 7776532111 12345677888887 8889999999999
Q ss_pred HHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCe
Q 006859 451 ETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNR 529 (628)
Q Consensus 451 ~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~ 529 (628)
|+..+++++ .+|+++|+|||++|+|+.....+.. ++..+.+.|.+++++||+.+ .....++++ +.+.+|+
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~-~l~~l~~~g~tvi~vtHd~~--~~~~~~d~v------~~l~~G~ 230 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR-IMQQLAEEGKTMVVVTHEMG--FARHVSSHV------IFLHQGK 230 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHH-HHHHHHHTTCCEEEECSCHH--HHHHHCSEE------EEEETTE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHH--HHHHhCCEE------EEEECCE
Confidence 988888776 8899999999999999866665444 45555556899999999954 333444544 3445666
Q ss_pred eeE
Q 006859 530 LDF 532 (628)
Q Consensus 530 ~~~ 532 (628)
++.
T Consensus 231 i~~ 233 (262)
T 1b0u_A 231 IEE 233 (262)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.87 E-value=5.3e-22 Score=205.06 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=122.4
Q ss_pred CCEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhc
Q 006859 352 GPLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQI 411 (628)
Q Consensus 352 ~~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~ 411 (628)
.++++.| ++.++++++++++. +|++++|+||||||||||||+|+|+. ...++
T Consensus 18 ~~l~~~y~g~~~vl~~vsl~i~--------~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 18 VGVEKIYPGGARSVRGVSFQIR--------EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp EEEEECCTTSTTCEEEEEEEEE--------TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred EEEEEEEcCCCEEEeeeEEEEC--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 4588999 88899999999999 99999999999999999999999954 01235
Q ss_pred CCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEE
Q 006859 412 GCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIV 466 (628)
Q Consensus 412 g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~l 466 (628)
| |||++...++ .+..++..+++.+..++.++++|+|++|+..+++++ .+|+++|
T Consensus 90 g-~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 168 (355)
T 1z47_A 90 G-LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL 168 (355)
T ss_dssp E-EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred E-EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 5 5554432111 234567788998888999999999999988888776 8899999
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 467 MDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 467 lDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
||||++|+|+.....+...+.+...+.|.|++++||+. .+....++++ +.+.+|++.
T Consensus 169 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~--~~a~~~adri------~vl~~G~i~ 225 (355)
T 1z47_A 169 FDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ--EEALEVADRV------LVLHEGNVE 225 (355)
T ss_dssp EESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH--HHHHHHCSEE------EEEETTEEE
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH--HHHHHhCCEE------EEEECCEEE
Confidence 99999999987666654444333334589999999994 4444445555 344555554
No 19
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.87 E-value=5.8e-22 Score=205.32 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=124.2
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIG 412 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g 412 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||||+|+|+. ...++|
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 78 (359)
T 2yyz_A 7 VNLKKYFGKVKAVDGVSFEVK--------DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG 78 (359)
T ss_dssp EEEEEEETTEEEEEEEEEEEC--------TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE
T ss_pred EEEEEEECCEEEEeeeEEEEc--------CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEE
Confidence 348899998899999999999 99999999999999999999999954 112456
Q ss_pred CcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|||++...++ .+..++..+++.+..++.++.+|+|++|+..+++++ .+|++++|
T Consensus 79 -~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 79 -MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp -EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6665432211 235667888998888999999999999988888776 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|||++|+|+.....+...+.+...+.|.|++++||+. .+....++++ +.+++|++..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~--~~~~~~adri------~vl~~G~i~~ 214 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ--AEAMTMASRI------AVFNQGKLVQ 214 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH--HHHHHHCSEE------EEEETTEEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHHhCCEE------EEEECCEEEE
Confidence 9999999987666654444333334589999999994 4444445555 3445665543
No 20
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.87 E-value=4.1e-22 Score=198.72 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=124.1
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HH
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------IL 408 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~ 408 (628)
..++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. ..
T Consensus 10 i~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (257)
T 1g6h_A 10 TENIVKYFGEFKALDGVSISVN--------KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81 (257)
T ss_dssp EEEEEEEETTEEEEEEECCEEE--------TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EeeeEEEECCEeeEeeeEEEEe--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 3458999999899999999999 99999999999999999999999953 12
Q ss_pred HhcCCcccCCCCCc-------------------------------------hHHHHHHhhcCCccccccCcCchHHHHHH
Q 006859 409 AQIGCYVPAHFSTI-------------------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKE 451 (628)
Q Consensus 409 ~~~g~~v~~~~~~i-------------------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~ 451 (628)
.++| |+|+....+ ..+..++..+|+.+...+..+.+|+|++|
T Consensus 82 ~~i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 82 YGIV-RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMK 160 (257)
T ss_dssp HTEE-ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred CCEE-EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHH
Confidence 3466 666543110 01234566778888888889999999999
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCee
Q 006859 452 TAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRL 530 (628)
Q Consensus 452 ~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~ 530 (628)
+..+++++ .+|+++|||||++|+|+.....+.. ++..+.+.|.+++++||+.+ .+...++++ +.+.+|++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~~--~~~~~~d~v------~~l~~G~i 231 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLELKAKGITFLIIEHRLD--IVLNYIDHL------YVMFNGQI 231 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECSCCS--TTGGGCSEE------EEEETTEE
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCHH--HHHHhCCEE------EEEECCEE
Confidence 88888776 8899999999999999876665444 45555556999999999954 333444544 34456666
Q ss_pred eE
Q 006859 531 DF 532 (628)
Q Consensus 531 ~~ 532 (628)
+.
T Consensus 232 ~~ 233 (257)
T 1g6h_A 232 IA 233 (257)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.87 E-value=6.8e-22 Score=205.01 Aligned_cols=163 Identities=16% Similarity=0.177 Sum_probs=123.5
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIG 412 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g 412 (628)
.++++.|+++++++++++++. +|++++|+||||||||||||+|+|+. ...++|
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 78 (362)
T 2it1_A 7 ENIVKKFGNFTALNNINLKIK--------DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78 (362)
T ss_dssp EEEEEESSSSEEEEEEEEEEC--------TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE
T ss_pred EeEEEEECCEEEEEeeEEEEC--------CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEE
Confidence 348899998899999999999 99999999999999999999999954 112456
Q ss_pred CcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|||++...++ .+.+++..+++.+..++.++.+|+|++|+..+++++ .+|+++||
T Consensus 79 -~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 79 -LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp -EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 6666543221 134567778888888999999999999988888776 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
|||++|+|+.....+...+.+...+.|.+++++||+. .+....++++ +.+++|++.
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~--~~a~~~adri------~vl~~G~i~ 213 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ--AEALAMADRI------AVIREGEIL 213 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH--HHHHHHCSEE------EEEETTEEE
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH--HHHHHhCCEE------EEEECCEEE
Confidence 9999999987666654434333234589999999994 4444445555 344566554
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.86 E-value=1.6e-21 Score=193.58 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=116.2
Q ss_pred CCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCCCc
Q 006859 352 GPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFSTI 422 (628)
Q Consensus 352 ~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~~i 422 (628)
.++++.|+ +.++++++++++. +|++++|+||||||||||+|+|+|+. +..++| |+|+.....
T Consensus 8 ~~l~~~y~~~~~vl~~isl~i~--------~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~-~v~q~~~~~ 78 (253)
T 2nq2_C 8 ENLGFYYQAENFLFQQLNFDLN--------KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIG-FVPQFFSSP 78 (253)
T ss_dssp EEEEEEETTTTEEEEEEEEEEE--------TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSCCCCS
T ss_pred eeEEEEeCCCCeEEEEEEEEEC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEE-EEcCCCccC
Confidence 35888998 8889999999999 99999999999999999999999953 112344 555432110
Q ss_pred ----------------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Q 006859 423 ----------------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRA 473 (628)
Q Consensus 423 ----------------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~g 473 (628)
..+..++..+|+.+...+..+.+|+|++|+..+++++ .+|++++||||++|
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 1134456778888888888999999999988888776 88999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhC-CcEEEEEcCChhHHHHhhhCcce
Q 006859 474 TSSSDGFAIAWSCCEHLLSL-KAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 474 t~~~~~~~~~~~~~~~l~~~-~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+.....+.. ++..+.+. |.+++++||+.+. ....++++
T Consensus 159 LD~~~~~~l~~-~l~~l~~~~g~tvi~vtHd~~~--~~~~~d~v 199 (253)
T 2nq2_C 159 LDLANQDIVLS-LLIDLAQSQNMTVVFTTHQPNQ--VVAIANKT 199 (253)
T ss_dssp SCHHHHHHHHH-HHHHHHHTSCCEEEEEESCHHH--HHHHCSEE
T ss_pred CCHHHHHHHHH-HHHHHHHhcCCEEEEEecCHHH--HHHhCCEE
Confidence 99866665444 44455544 8999999999543 33344544
No 23
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=7.1e-23 Score=224.24 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=92.2
Q ss_pred cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCc-------------------------------------
Q 006859 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTI------------------------------------- 422 (628)
Q Consensus 380 ~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i------------------------------------- 422 (628)
++|++++|+||||||||||+|+|+|+ ++|+.|.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl---------~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 93 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGE---------IIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQ 93 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS---------SCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcC---------CCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccc
Confidence 48999999999999999999999993 22222221
Q ss_pred -----------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHH
Q 006859 423 -----------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSD 478 (628)
Q Consensus 423 -----------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~ 478 (628)
.....++..+++.+..++.++++|+|++|+..+++++ .+|++++||||++++|+..
T Consensus 94 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~ 173 (538)
T 3ozx_A 94 YVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE 173 (538)
T ss_dssp CTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 0234566778888888889999999999999888877 8899999999999999866
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 479 GFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
...+. .+++.+.+ +.+++++||+.+..
T Consensus 174 ~~~l~-~~l~~l~~-g~tii~vsHdl~~~ 200 (538)
T 3ozx_A 174 RMNMA-KAIRELLK-NKYVIVVDHDLIVL 200 (538)
T ss_dssp HHHHH-HHHHHHCT-TSEEEEECSCHHHH
T ss_pred HHHHH-HHHHHHhC-CCEEEEEEeChHHH
Confidence 55543 45555655 89999999996543
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.86 E-value=1.9e-21 Score=200.73 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=119.0
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+++ +++++++++. +|++++|+||||||||||||+|+|+. ...++|
T Consensus 6 ~l~~~y~~~-~l~~vsl~i~--------~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig- 75 (348)
T 3d31_A 6 SLSRKWKNF-SLDNLSLKVE--------SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA- 75 (348)
T ss_dssp EEEEECSSC-EEEEEEEEEC--------TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE-
T ss_pred EEEEEECCE-EEeeeEEEEc--------CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE-
Confidence 488899887 9999999999 99999999999999999999999954 234566
Q ss_pred cccCCCCCch---------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 006859 414 YVPAHFSTIR---------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELG 471 (628)
Q Consensus 414 ~v~~~~~~i~---------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~ 471 (628)
|||++...++ .+..++..+++.+..++.++.+|+|++|+..+++++ .+|++++||||+
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 7776543221 234567778888888999999999999999888877 889999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 472 RATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 472 ~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+++|+.....+...+.+...+.|.|++++||+. .+....++++
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~--~~~~~~adri 198 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQ--TEARIMADRI 198 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHCSEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhCCEE
Confidence 999987666654444333345689999999994 4444445554
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.86 E-value=1.1e-21 Score=204.25 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=121.9
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcC
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIG 412 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g 412 (628)
.++++.|+.+++++++++++. +|++++|+||||||||||||+|+|+. ...++|
T Consensus 15 ~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 86 (372)
T 1v43_A 15 ENLTKRFGNFTAVNKLNLTIK--------DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEEC--------TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred EEEEEEECCEEEEeeeEEEEC--------CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEE
Confidence 358899998889999999999 99999999999999999999999954 112355
Q ss_pred CcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEE
Q 006859 413 CYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVM 467 (628)
Q Consensus 413 ~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~ll 467 (628)
|||++...++ .+..++..+++.+..++.++.+|+|++|+..+++++ .+|+++||
T Consensus 87 -~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 87 -MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp -EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred -EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5655432111 234567888998888999999999999988888776 88999999
Q ss_pred eCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 468 DELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 468 DE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
|||++++|+.....+...+.+...+.|.+++++||+. .+....++++ +.+++|++.
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~--~~a~~~adri------~vl~~G~i~ 221 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ--VEAMTMGDRI------AVMNRGQLL 221 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH--HHHHHHCSEE------EEEETTEEE
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH--HHHHHhCCEE------EEEECCEEE
Confidence 9999999987666655444333334589999999994 4444445555 344556554
No 26
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.86 E-value=1.7e-21 Score=191.72 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=116.8
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------------HHHhcCC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------------ILAQIGC 413 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------------~~~~~g~ 413 (628)
++++.|+. +++++++++. + ++++|+||||||||||+|+|+|+. ...++|
T Consensus 6 ~l~~~y~~--~l~~isl~i~--------~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~- 73 (240)
T 2onk_A 6 RAEKRLGN--FRLNVDFEMG--------R-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG- 73 (240)
T ss_dssp EEEEEETT--EEEEEEEEEC--------S-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCB-
T ss_pred EEEEEeCC--EEeeeEEEEC--------C-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEE-
Confidence 47788875 4888888888 9 999999999999999999999964 112355
Q ss_pred cccCCCCCch----------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCC
Q 006859 414 YVPAHFSTIR----------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDEL 470 (628)
Q Consensus 414 ~v~~~~~~i~----------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~ 470 (628)
|+|+....++ .+..++..+|+.+...+.++.+|+|++|+..+++++ .+|+++++|||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6665432110 134567778888888889999999999988888765 88999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 471 GRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 471 ~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++|+|+.....+.. ++..+. +.|.+++++||+.+ .....++++ +.+++|++..
T Consensus 154 ts~LD~~~~~~~~~-~l~~l~~~~g~tvi~vtHd~~--~~~~~~d~i------~~l~~G~i~~ 207 (240)
T 2onk_A 154 LSAVDLKTKGVLME-ELRFVQREFDVPILHVTHDLI--EAAMLADEV------AVMLNGRIVE 207 (240)
T ss_dssp TSSCCHHHHHHHHH-HHHHHHHHHTCCEEEEESCHH--HHHHHCSEE------EEEETTEEEE
T ss_pred cccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHH--HHHHhCCEE------EEEECCEEEE
Confidence 99999866655444 444454 35899999999954 333444544 3445666654
No 27
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.86 E-value=1.6e-21 Score=202.11 Aligned_cols=163 Identities=14% Similarity=0.138 Sum_probs=123.5
Q ss_pred CCEEEEcCccC--cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H---------
Q 006859 352 GPLAIDGGRHP--ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I--------- 407 (628)
Q Consensus 352 ~~l~~~~~~~~--~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~--------- 407 (628)
.++++.|+.++ +++++++++. +|++++|+||||||||||||+|+|+. +
T Consensus 7 ~~l~~~y~~~~~~vl~~vsl~i~--------~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~ 78 (353)
T 1oxx_K 7 KNVSKVFKKGKVVALDNVNINIE--------NGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (353)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEEC--------TTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EeEEEEECCEeeeeEeceEEEEC--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCC
Confidence 34888999888 9999999999 99999999999999999999999954 0
Q ss_pred --HHhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 408 --LAQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 408 --~~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
..++| |||++...++ .+..++..+++.+..++.++++|+|++|+..+++++ .
T Consensus 79 ~~~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 79 PEDRKIG-MVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp GGGSCEE-EEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 11355 6665442211 234567788998888999999999999988888776 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|+++|||||++|+|+.....+...+.+...+.|.+++++||+. .+....++++ +.+++|++.
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~--~~~~~~adri------~vl~~G~i~ 220 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP--ADIFAIADRV------GVLVKGKLV 220 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH--HHHHHHCSEE------EEEETTEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHhCCEE------EEEECCEEE
Confidence 89999999999999997766655444333334589999999994 4444445555 344555554
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.86 E-value=2.8e-21 Score=201.62 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=124.1
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H--------H--
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I--------L-- 408 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~--------~-- 408 (628)
.++++.|+++++++++++++. +|++++|+||||||||||||+|+|+. + +
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~ 78 (372)
T 1g29_1 7 VDVWKVFGEVTAVREMSLEVK--------DGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78 (372)
T ss_dssp EEEEEEETTEEEEEEEEEEEE--------TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG
T ss_pred EeEEEEECCEEEEeeeEEEEc--------CCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH
Confidence 348899998899999999999 99999999999999999999999964 1 1
Q ss_pred --HhcCCcccCCCCCch------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 409 --AQIGCYVPAHFSTIR------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 409 --~~~g~~v~~~~~~i~------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
.++| |||++...++ .+..++..+++.+..++.++.+|+|++|+..+++++ .+
T Consensus 79 ~~r~ig-~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 79 KDRDIA-MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp GGSSEE-EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hHCCEE-EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 1355 6666543221 134566778888888999999999999988888776 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|+++|||||++++|+.....+...+.+...+.|.+++++||+. .+....++++ +.+++|++..
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~--~~a~~~adri------~vl~~G~i~~ 220 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ--VEAMTMGDRI------AVMNRGVLQQ 220 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH--HHHHHHCSEE------EEEETTEEEE
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH--HHHHHhCCEE------EEEeCCEEEE
Confidence 9999999999999987666654444333334589999999994 4444445555 3445565543
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.85 E-value=2.6e-21 Score=194.68 Aligned_cols=164 Identities=13% Similarity=0.204 Sum_probs=121.9
Q ss_pred CCCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH-------------H----------
Q 006859 351 NGPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV-------------I---------- 407 (628)
Q Consensus 351 ~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~-------------~---------- 407 (628)
..++++.|+++++|+++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~--------~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIA--------KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV 95 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE--------TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred EEeEEEEECCEEEEEeeeEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH
Confidence 3458899998899999999999 99999999999999999999999953 1
Q ss_pred HHhcCCcccCCC-----C--Cc-----------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHH
Q 006859 408 LAQIGCYVPAHF-----S--TI-----------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 408 ~~~~g~~v~~~~-----~--~i-----------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
..++| |+|+.. . ++ ..+..++..+|+.+...+..+++|+|++|+..+++
T Consensus 96 ~~~i~-~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 96 RQHIG-FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp HTTEE-EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred cCcEE-EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 12355 554321 0 00 01234567788888888899999999999888887
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEE--EEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYT--IFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~v--i~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++ .+|+++|||||++|+|+.....+.. ++..+.+.|.++ +++||+.+ .+...++++ +.+.+|++++
T Consensus 175 aL~~~p~lLlLDEPts~LD~~~~~~l~~-~l~~l~~~g~tv~~iivtHd~~--~~~~~~d~v------~~l~~G~i~~ 243 (279)
T 2ihy_A 175 ALMGQPQVLILDEPAAGLDFIARESLLS-ILDSLSDSYPTLAMIYVTHFIE--EITANFSKI------LLLKDGQSIQ 243 (279)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHHCTTCEEEEEESCGG--GCCTTCCEE------EEEETTEEEE
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHH-HHHHHHHCCCEEEEEEEecCHH--HHHHhCCEE------EEEECCEEEE
Confidence 76 8899999999999999876665444 444454448899 99999954 334445544 3445666654
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.85 E-value=3e-21 Score=191.04 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=115.2
Q ss_pred CEEEEc--CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDG--GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~--~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.| ++.++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 12 ~l~~~y~~~~~~vl~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 83 (247)
T 2ff7_A 12 NIRFRYKPDSPVILDNINLSIK--------QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 83 (247)
T ss_dssp EEEEESSTTSCEEEEEEEEEEE--------TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred EEEEEeCCCCcceeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh
Confidence 488899 46789999999999 99999999999999999999999953 234
Q ss_pred hcCCcccCCCCCc--h---------------HHHHHHhhcCCccccc-----------cCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTI--R---------------VVDRIFTRMGTVDNLE-----------SNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i--~---------------~~~~~~~~~~~~~~~~-----------~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| |+|+....+ . .+...+..+++.+.+. ...+.+|+|++|+..+++++ .
T Consensus 84 ~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 84 QVG-VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp HEE-EECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred cEE-EEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 577 777654211 1 1123333445443332 34578999999988888776 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+|++++||||++|+|+.....+.. ++..+. .+.+++++||+.+... .++++ +.+.+|+++.
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~-~l~~~~-~g~tviivtH~~~~~~---~~d~v------~~l~~G~i~~ 223 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMR-NMHKIC-KGRTVIIIAHRLSTVK---NADRI------IVMEKGKIVE 223 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHH-HHHHHH-TTSEEEEECSSGGGGT---TSSEE------EEEETTEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHH-HHHHHc-CCCEEEEEeCCHHHHH---hCCEE------EEEECCEEEE
Confidence 899999999999999876665444 444444 4899999999966432 35555 3445666654
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.85 E-value=4.3e-21 Score=192.16 Aligned_cols=162 Identities=19% Similarity=0.147 Sum_probs=120.8
Q ss_pred CEEEEcC--c---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------------------HHH
Q 006859 353 PLAIDGG--R---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------------------~~~ 409 (628)
++++.|+ . +++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 7 ~l~~~y~~~~~~~~~vl~~vsl~i~--------~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 7 NVSHIFHRGTPLEKKALENVSLVIN--------EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp EEEEEESTTSTTCEEEEEEEEEEEC--------TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGG
T ss_pred EEEEEecCCCccccceeeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhh
Confidence 4788886 4 579999999999 99999999999999999999999953 123
Q ss_pred hcCCcccCCC-CC---c--------------------hHHHHHHhhcCCc--cccccCcCchHHHHHHHHHHHHhC-CCC
Q 006859 410 QIGCYVPAHF-ST---I--------------------RVVDRIFTRMGTV--DNLESNSSTFMTEMKETAFVMQNV-SER 462 (628)
Q Consensus 410 ~~g~~v~~~~-~~---i--------------------~~~~~~~~~~~~~--~~~~~~~s~~s~~~~~~~~i~~~~-~~~ 462 (628)
++| |+|+.. .. . ..+..++..+|+. +...+.++++|+|++|+..+++++ .+|
T Consensus 79 ~i~-~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 157 (266)
T 2yz2_A 79 NIG-IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP 157 (266)
T ss_dssp GEE-EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hEE-EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 466 776652 10 0 1134567778888 778889999999999988887765 889
Q ss_pred cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 463 SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 463 ~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++++||||++|+|+.....+. .++..+.+.|.+++++||+.+. +...++++ +.+++|++..
T Consensus 158 ~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g~tii~vtHd~~~--~~~~~d~v------~~l~~G~i~~ 218 (266)
T 2yz2_A 158 DILILDEPLVGLDREGKTDLL-RIVEKWKTLGKTVILISHDIET--VINHVDRV------VVLEKGKKVF 218 (266)
T ss_dssp SEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEECSCCTT--TGGGCSEE------EEEETTEEEE
T ss_pred CEEEEcCccccCCHHHHHHHH-HHHHHHHHcCCEEEEEeCCHHH--HHHhCCEE------EEEECCEEEE
Confidence 999999999999986655544 3455555458999999999553 33334544 3345666543
No 32
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.85 E-value=2.4e-21 Score=192.34 Aligned_cols=145 Identities=15% Similarity=0.073 Sum_probs=106.9
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHH--H--------------------HHH
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI--V--------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~--~--------------------~~~ 409 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+ . -..
T Consensus 7 ~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~ 78 (250)
T 2d2e_A 7 RDLWASIDGETILKGVNLVVP--------KGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERA 78 (250)
T ss_dssp EEEEEEETTEEEEEEEEEEEE--------TTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHH
T ss_pred EeEEEEECCEEEEeceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHH
Confidence 358899998899999999999 9999999999999999999999996 2 011
Q ss_pred --hcCCcccCCCCCch---------------------------HHHHHHhhcCC-ccccccCcCc-hHHHHHHHHHHHHh
Q 006859 410 --QIGCYVPAHFSTIR---------------------------VVDRIFTRMGT-VDNLESNSST-FMTEMKETAFVMQN 458 (628)
Q Consensus 410 --~~g~~v~~~~~~i~---------------------------~~~~~~~~~~~-~~~~~~~~s~-~s~~~~~~~~i~~~ 458 (628)
.+| |+|+....++ .+..++..+|+ .+..++.+++ +|+|++|+..++++
T Consensus 79 ~~~i~-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAra 157 (250)
T 2d2e_A 79 RKGLF-LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQL 157 (250)
T ss_dssp HTTBC-CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHH
T ss_pred hCcEE-EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 245 6766542110 11234555677 4667778888 99999998888877
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
+ .+|+++|||||++|+|+.....+. .++..+.+.|.+++++||+.+.
T Consensus 158 L~~~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 158 LVLEPTYAVLDETDSGLDIDALKVVA-RGVNAMRGPNFGALVITHYQRI 205 (250)
T ss_dssp HHHCCSEEEEECGGGTTCHHHHHHHH-HHHHHHCSTTCEEEEECSSSGG
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhcCCEEEEEecCHHH
Confidence 6 889999999999999986655543 3455555568999999999653
No 33
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.85 E-value=3.7e-21 Score=192.98 Aligned_cols=161 Identities=10% Similarity=0.148 Sum_probs=114.7
Q ss_pred CCEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------H
Q 006859 352 GPLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------I 407 (628)
Q Consensus 352 ~~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~ 407 (628)
.++++.|+. .++|+++++++. +|++++|+||||||||||+|+|+|+. +
T Consensus 20 ~~l~~~y~~~~~~~vl~~vsl~i~--------~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 20 QDVSFAYPNHPNVQVLQGLTFTLY--------PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp EEEEECCTTCTTSCCEEEEEEEEC--------TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred EEEEEEeCCCCCceeeEeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH
Confidence 458888876 789999999999 99999999999999999999999953 2
Q ss_pred HHhcCCcccCCCCCc--hHHH-------------------------HHHhhc--CCccccccCcCchHHHHHHHHHHHHh
Q 006859 408 LAQIGCYVPAHFSTI--RVVD-------------------------RIFTRM--GTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 408 ~~~~g~~v~~~~~~i--~~~~-------------------------~~~~~~--~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
..++| |+|+....+ .+.+ ..+..+ |+.+...+..+.+|+|++|+..++++
T Consensus 92 ~~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 92 HTQVA-AVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp HHHEE-EECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred hccEE-EEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence 34577 777654211 1111 112223 34444566778999999998888877
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+ .+|+++|||||++|+|+.....+.. ++..+. +.+.+++++||+.+.. . .++++ +.+.+|++.
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~~~g~tviivtHd~~~~--~-~~d~v------~~l~~G~i~ 235 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQR-LLYESPEWASRTVLLITQQLSLA--E-RAHHI------LFLKEGSVC 235 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHH-HHHHCTTTTTSEEEEECSCHHHH--T-TCSEE------EEEETTEEE
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHH-HHHHHHhhcCCEEEEEeCCHHHH--H-hCCEE------EEEECCEEE
Confidence 5 8899999999999999866555433 444443 3489999999996543 3 25655 334555554
No 34
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=4.8e-23 Score=233.58 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=62.4
Q ss_pred HhhcCCccc-cccCcCchHHHHHHHHHHHHhC-CCCc--EEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 429 FTRMGTVDN-LESNSSTFMTEMKETAFVMQNV-SERS--LIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 429 ~~~~~~~~~-~~~~~s~~s~~~~~~~~i~~~~-~~~~--l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
+..+|+.+. .++..+++|+|++|+..+++++ .+|+ ++|||||++|+|+.....+.. ++..+.+.|.|++++||+.
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA-TLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH-HHHHHHHTTCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHHHcCCEEEEEeCCH
Confidence 444555543 5678899999999999998887 5666 999999999999977666444 5556667799999999997
Q ss_pred hHHHH
Q 006859 505 NLSEL 509 (628)
Q Consensus 505 ~l~~~ 509 (628)
++...
T Consensus 265 ~~~~~ 269 (670)
T 3ux8_A 265 DTMLA 269 (670)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 75543
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.84 E-value=7.4e-21 Score=183.51 Aligned_cols=143 Identities=18% Similarity=0.237 Sum_probs=111.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------HHHhcCCcc
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------ILAQIGCYV 415 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------~~~~~g~~v 415 (628)
.++++.|++ ++++++++++. +|++++|+||||||||||||+|+|+. ...++| |+
T Consensus 14 ~~ls~~y~~-~il~~vsl~i~--------~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~-~v 83 (214)
T 1sgw_A 14 RDLSVGYDK-PVLERITMTIE--------KGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF-FL 83 (214)
T ss_dssp EEEEEESSS-EEEEEEEEEEE--------TTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEE-EE
T ss_pred EEEEEEeCC-eEEeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEE-EE
Confidence 358899988 99999999999 99999999999999999999999954 123456 67
Q ss_pred cCCCCCch----------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 006859 416 PAHFSTIR----------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGR 472 (628)
Q Consensus 416 ~~~~~~i~----------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~ 472 (628)
|+....++ .+..++..+|+.+. .+..+++|+|++|+..+++++ .+|++++||||++
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 84 PEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp CSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred eCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 66532111 12345666777766 778889999999988888776 8899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 473 ATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 473 gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
|+|+.....+.. ++..+.+.+.+++++||+.+.
T Consensus 163 ~LD~~~~~~l~~-~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 163 AIDEDSKHKVLK-SILEILKEKGIVIISSREELS 195 (214)
T ss_dssp TSCTTTHHHHHH-HHHHHHHHHSEEEEEESSCCT
T ss_pred CCCHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHH
Confidence 999876666444 444455458999999999653
No 36
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.83 E-value=1e-20 Score=189.48 Aligned_cols=163 Identities=20% Similarity=0.134 Sum_probs=117.4
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------------HH-
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------------IL- 408 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------------~~- 408 (628)
.++++.|+++++++++++++. +|++++|+||||||||||+|+|+|+. ..
T Consensus 24 ~~l~~~y~~~~vl~~vsl~i~--------~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 24 KDLHVSVEDKAILRGLSLDVH--------PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp EEEEEEETTEEEEEEEEEEEC--------TTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred EeEEEEECCEEEEEeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 458899998899999999999 99999999999999999999999961 01
Q ss_pred -HhcCCcccCCCCCch-------------------------------HHHHHHhhcCCc-cccccCcC-chHHHHHHHHH
Q 006859 409 -AQIGCYVPAHFSTIR-------------------------------VVDRIFTRMGTV-DNLESNSS-TFMTEMKETAF 454 (628)
Q Consensus 409 -~~~g~~v~~~~~~i~-------------------------------~~~~~~~~~~~~-~~~~~~~s-~~s~~~~~~~~ 454 (628)
..+| |+|+....++ .+..++..+|+. +...+.++ .+|+|++|+..
T Consensus 96 ~~~i~-~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 96 GEGIF-MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HHTEE-EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred hCCEE-EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 1255 6766542110 122445667775 34566666 59999999888
Q ss_pred HHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh-CcceeEEEEEEEEeCCeeeE
Q 006859 455 VMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI-YPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 455 i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~-~~~v~~~~~~~~~~~~~~~~ 532 (628)
+++++ .+|+++|||||++|+|+.....+. .++..+.+.|.+++++||+.+.. ... ++++ +.+.+|+++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~-~~l~~l~~~g~tviivtHd~~~~--~~~~~d~v------~~l~~G~i~~ 245 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVA-DGVNSLRDGKRSFIIVTHYQRIL--DYIKPDYV------HVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHH-HHHHTTCCSSCEEEEECSSGGGG--GTSCCSEE------EEEETTEEEE
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeeCHHHH--HhhcCCEE------EEEECCEEEE
Confidence 88776 889999999999999986655533 34444445589999999996543 222 3444 3445666653
No 37
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.83 E-value=2e-20 Score=184.90 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=114.4
Q ss_pred CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHHhcCCcccCCCCC
Q 006859 362 PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILAQIGCYVPAHFST 421 (628)
Q Consensus 362 ~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~~~g~~v~~~~~~ 421 (628)
++++++++++. +|++++|+||||||||||+|+|+|+. +..++| |+|+....
T Consensus 14 ~vl~~vsl~i~--------~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~ 84 (249)
T 2qi9_C 14 TRLGPLSGEVR--------AGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRA-YLSQQQTP 84 (249)
T ss_dssp TTEEEEEEEEE--------TTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEE-EECSCCCC
T ss_pred EEEeeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEE-EECCCCcc
Confidence 78888888888 99999999999999999999999963 223466 77665321
Q ss_pred c-------------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCc-------EEEEeCCCCCC
Q 006859 422 I-------------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS-------LIVMDELGRAT 474 (628)
Q Consensus 422 i-------------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~-------l~llDE~~~gt 474 (628)
+ ..+..++..+|+.+...+..+.+|+|++|+..+++++ .+|+ +++||||++|+
T Consensus 85 ~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L 164 (249)
T 2qi9_C 85 PFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164 (249)
T ss_dssp CTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC
T ss_pred CCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC
Confidence 1 1234567778888888889999999999988888776 6788 99999999999
Q ss_pred ChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 475 SSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|+.....+.. ++..+.+.|.+++++||+.+.. ...++++ +.+++|++..
T Consensus 165 D~~~~~~l~~-~l~~l~~~g~tviivtHd~~~~--~~~~d~v------~~l~~G~i~~ 213 (249)
T 2qi9_C 165 DVAQQSALDK-ILSALSQQGLAIVMSSHDLNHT--LRHAHRA------WLLKGGKMLA 213 (249)
T ss_dssp CHHHHHHHHH-HHHHHHHTTCEEEEECSCHHHH--HHHCSEE------EEEETTEEEE
T ss_pred CHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHH--HHhCCEE------EEEECCEEEE
Confidence 9866665444 4555555589999999995543 3334444 3345666543
No 38
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.83 E-value=1e-20 Score=186.97 Aligned_cols=150 Identities=13% Similarity=0.147 Sum_probs=109.2
Q ss_pred CEEEEc-CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDG-GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.| +.+++++++++++. +|++++|+||||||||||+|+|+|+. +..+
T Consensus 6 ~l~~~y~~~~~vl~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T 1mv5_A 6 HVDFAYDDSEQILRDISFEAQ--------PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77 (243)
T ss_dssp EEEECSSSSSCSEEEEEEEEC--------TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTT
T ss_pred EEEEEeCCCCceEEEeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhh
Confidence 478888 67889999999999 99999999999999999999999954 1224
Q ss_pred cCCcccCCCCCc--h----------------HHHHHHhhcCCccccc-----------cCcCchHHHHHHHHHHHHhC-C
Q 006859 411 IGCYVPAHFSTI--R----------------VVDRIFTRMGTVDNLE-----------SNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 411 ~g~~v~~~~~~i--~----------------~~~~~~~~~~~~~~~~-----------~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
+| |+|+....+ . .....+..+++.+.+. ...+.+|+|++|+..+++++ .
T Consensus 78 i~-~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 78 IG-FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp CC-EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EE-EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 55 666543211 0 1223344445544332 34578999999988888776 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+|+++++|||++|+|+.....+.. ++..+. .+.+++++||+.+... .++++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~-~l~~~~-~~~tvi~vtH~~~~~~---~~d~v 207 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQK-ALDSLM-KGRTTLVIAHRLSTIV---DADKI 207 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHH-HHHHHH-TTSEEEEECCSHHHHH---HCSEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHH-HHHHhc-CCCEEEEEeCChHHHH---hCCEE
Confidence 899999999999999876665444 444444 5899999999966443 35555
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.83 E-value=9e-21 Score=185.61 Aligned_cols=162 Identities=12% Similarity=0.132 Sum_probs=108.0
Q ss_pred CCEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCCC
Q 006859 352 GPLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFST 421 (628)
Q Consensus 352 ~~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~~ 421 (628)
.++++.|+ ++++++++++++. +|++++|+||||||||||+|+|+|+. +..++| |+|+....
T Consensus 10 ~~l~~~y~~~~~~il~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~-~v~q~~~~ 80 (229)
T 2pze_A 10 ENVTAFWEEGGTPVLKDINFKIE--------RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQFSWI 80 (229)
T ss_dssp EEEEECSSTTSCCSEEEEEEEEE--------TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSSCCC
T ss_pred EEEEEEeCCCCceeeeeeEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEE-EEecCCcc
Confidence 34788884 5789999999999 99999999999999999999999943 112344 55544321
Q ss_pred c--hH--------------HHHHHhhcCCcccc-----------ccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Q 006859 422 I--RV--------------VDRIFTRMGTVDNL-----------ESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRA 473 (628)
Q Consensus 422 i--~~--------------~~~~~~~~~~~~~~-----------~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~g 473 (628)
+ .+ ....+...++.+.+ ....+.+|+|++|+..+++++ .+|++++||||++|
T Consensus 81 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~ 160 (229)
T 2pze_A 81 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 160 (229)
T ss_dssp CSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred cCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccC
Confidence 1 11 11222233333222 223478999999988888776 88999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 474 TSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 474 t~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+|+.....+...++..+ ..+.+++++||+.+... .++++ +.+++|++..
T Consensus 161 LD~~~~~~i~~~l~~~~-~~~~tvi~vtH~~~~~~---~~d~v------~~l~~G~i~~ 209 (229)
T 2pze_A 161 LDVLTEKEIFESCVCKL-MANKTRILVTSKMEHLK---KADKI------LILHEGSSYF 209 (229)
T ss_dssp SCHHHHHHHHHHCCCCC-TTTSEEEEECCCHHHHH---HCSEE------EEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHh-hCCCEEEEEcCChHHHH---hCCEE------EEEECCEEEE
Confidence 98855444322211112 23789999999965443 25555 3445666653
No 40
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.82 E-value=3.1e-20 Score=188.53 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=114.3
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.|+ ..++|+++++++. +|++++|+||||||||||+|+|+|+. +..+
T Consensus 58 ~vs~~y~~~~~vL~~isl~i~--------~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 58 NVHFSYADGRETLQDVSFTVM--------PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp EEEEESSTTCEEEEEEEEEEC--------TTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT
T ss_pred EEEEEcCCCCceeeeeeEEEc--------CCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc
Confidence 5788884 5789999999999 99999999999999999999999953 4456
Q ss_pred cCCcccCCCCCch--H---------------HHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTIR--V---------------VDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i~--~---------------~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+| |||++...+. + ....+...++.+ .+......+|+|++|+..+++++ .+
T Consensus 130 i~-~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 130 IG-VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EE-EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred eE-EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 77 7777643221 1 122223333332 23344467999999998888877 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
|+++|||||++++|+.....+... +..+. .+.|++++||++... .. +++| +++++|+++.
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~-l~~l~-~~~Tvi~itH~l~~~--~~-aD~i------~vl~~G~iv~ 268 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQAS-LAKVC-ANRTTIVVAHRLSTV--VN-ADQI------LVIKDGCIVE 268 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHH-HHHHH-TTSEEEEECCSHHHH--HT-CSEE------EEEETTEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHH-HHHHc-CCCEEEEEEcChHHH--Hc-CCEE------EEEECCEEEE
Confidence 999999999999998665554443 33333 368999999995543 33 6655 4456666653
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=185.36 Aligned_cols=161 Identities=15% Similarity=0.181 Sum_probs=108.5
Q ss_pred CCEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCCC
Q 006859 352 GPLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFST 421 (628)
Q Consensus 352 ~~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~~ 421 (628)
.++++.|+ .+++++++++++. +|++++|+||||||||||+|+|+|+. +-.++| |+|+....
T Consensus 7 ~~l~~~y~~~~~~vl~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~~ 77 (237)
T 2cbz_A 7 RNATFTWARSDPPTLNGITFSIP--------EGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA-YVPQQAWI 77 (237)
T ss_dssp EEEEEESCTTSCCSEEEEEEEEC--------TTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEE-EECSSCCC
T ss_pred EEEEEEeCCCCCceeeeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEE-EEcCCCcC
Confidence 34888887 5789999999999 99999999999999999999999953 112344 55554311
Q ss_pred --chH--------------HHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Q 006859 422 --IRV--------------VDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRA 473 (628)
Q Consensus 422 --i~~--------------~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~g 473 (628)
..+ ...+...+++.+ .+.+..+.+|+|++|+..+++++ .+|++++||||++|
T Consensus 78 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 157 (237)
T 2cbz_A 78 QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 157 (237)
T ss_dssp CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 111 112222222211 23456788999999988888776 88999999999999
Q ss_pred CChHHHHHHHHHHH--HHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 474 TSSSDGFAIAWSCC--EHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 474 t~~~~~~~~~~~~~--~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|+.....+...+. ..+ ..+.+++++||+.+... .++++ +.+++|++.
T Consensus 158 LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~---~~d~v------~~l~~G~i~ 207 (237)
T 2cbz_A 158 VDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLP---QVDVI------IVMSGGKIS 207 (237)
T ss_dssp SCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGG---GSSEE------EEEETTEEE
T ss_pred cCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHH---hCCEE------EEEeCCEEE
Confidence 98855444333221 111 24789999999966432 35555 334555554
No 42
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.82 E-value=3.4e-20 Score=184.86 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=112.2
Q ss_pred CCEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HH
Q 006859 352 GPLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------IL 408 (628)
Q Consensus 352 ~~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~ 408 (628)
.++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+. +.
T Consensus 21 ~~l~~~y~~~~~~~vl~~vsl~i~--------~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 21 SDVNFSYPKQTNHRTLKSINFFIP--------SGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp EEEEECCTTCCSSCSEEEEEEEEC--------TTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHH
T ss_pred EEEEEEeCCCCcCceeEeeEEEEC--------CCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHh
Confidence 358888875 479999999999 99999999999999999999999953 22
Q ss_pred HhcCCcccCCCCCc--hH---------------HHHHHhhcCCcccc-----------ccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHFSTI--RV---------------VDRIFTRMGTVDNL-----------ESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~~~i--~~---------------~~~~~~~~~~~~~~-----------~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| |+|++...+ .+ ....+...++.+.+ .+..+.+|+|++|+..+++++
T Consensus 93 ~~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 93 SIIG-IVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp TTEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred ccEE-EEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 3466 777654211 11 11223333443321 234578999999988888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
.+|++++||||++|+|+.....+. .++..+.+ +.+++++||+.+... .++++ +.+++|++.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~-~~l~~l~~-~~tviivtH~~~~~~---~~d~i------~~l~~G~i~ 232 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQ-KAVEDLRK-NRTLIIIAHRLSTIS---SAESI------ILLNKGKIV 232 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHH-HHHHHHTT-TSEEEEECSSGGGST---TCSEE------EEEETTEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHH-HHHHHhcC-CCEEEEEcCCHHHHH---hCCEE------EEEECCEEE
Confidence 889999999999999986655543 34444544 789999999966432 35555 334556554
No 43
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.80 E-value=3.4e-20 Score=194.14 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=119.2
Q ss_pred CCEEEEc--CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------------------HHH
Q 006859 352 GPLAIDG--GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------------------ILA 409 (628)
Q Consensus 352 ~~l~~~~--~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------------------~~~ 409 (628)
.++++.| +..++|+++++++. +|++++|+||||||||||||+|+|+. +..
T Consensus 23 ~~l~~~y~~~~~~~L~~vsl~i~--------~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 23 KDLTAKYTEGGNAILENISFSIS--------PGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp EEEEEESSSSSCCSEEEEEEEEC--------TTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHH
T ss_pred EEEEEEecCCCeEEeeceeEEEc--------CCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhC
Confidence 4588899 67899999999999 99999999999999999999999953 235
Q ss_pred hcCCcccCCCCCch----------------HHHHHHhhcCCccccccCcCc-----------hHHHHHHHHHHHHhC-CC
Q 006859 410 QIGCYVPAHFSTIR----------------VVDRIFTRMGTVDNLESNSST-----------FMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 410 ~~g~~v~~~~~~i~----------------~~~~~~~~~~~~~~~~~~~s~-----------~s~~~~~~~~i~~~~-~~ 461 (628)
++| +||++...++ .....+..+++.+.+.+.+.. +|+|++|+..+++++ .+
T Consensus 95 ~ig-~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFG-VIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEE-EESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEE-EEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 677 7777653221 234566777887777777776 999999998888876 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
|+++|||||++++|+.....+... +..+ ..+.|++++||+.+.. ..++++ +++++|++.
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~-l~~~-~~~~tvi~vtHd~e~~---~~aDri------~vl~~G~i~ 232 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRT-LKQA-FADCTVILCEARIEAM---LECDQF------LVIEENKVR 232 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHH-HHTT-TTTSCEEEECSSSGGG---TTCSEE------EEEETTEEE
T ss_pred CCEEEEeCCccCCCHHHHHHHHHH-HHHH-hCCCEEEEEEcCHHHH---HhCCEE------EEEECCEEE
Confidence 999999999888887554443322 2222 2478999999996533 335666 344555554
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.79 E-value=8.5e-19 Score=192.52 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=107.8
Q ss_pred CCEEEEcCcc-CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------H-------H-H-------
Q 006859 352 GPLAIDGGRH-PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------I-------L-A------- 409 (628)
Q Consensus 352 ~~l~~~~~~~-~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------~-------~-~------- 409 (628)
.++++.|+.. +++.+++ .+. +|++++|+||||||||||+|+|+|+. + + .
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~--------~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~ 95 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVK--------EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCC--------TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHH
T ss_pred cCcEEEECCccccccCcC-cCC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHH
Confidence 4599999876 4888888 788 99999999999999999999999932 0 0 0
Q ss_pred -----------hcCCcccCCC--------CCc----------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 410 -----------QIGCYVPAHF--------STI----------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 410 -----------~~g~~v~~~~--------~~i----------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.+| ++++.. +.+ .....++..+|+.+..++.++++|+|++|+..+++++
T Consensus 96 ~~~~~~~~~~~~~~-~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 96 NYFEKLKNGEIRPV-VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL 174 (538)
T ss_dssp HHHHHHHTTSCCCE-EECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-hhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh
Confidence 001 111110 010 1234567778888778888999999999998888776
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.+|+++|||||++++|+.....+ ..+++.+.+.|.+++++||+.++.
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l-~~~L~~l~~~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNA-ARAIRRLSEEGKSVLVVEHDLAVL 221 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECSCHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHH
Confidence 88999999999999998665553 345555656799999999995543
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.78 E-value=3.8e-19 Score=177.09 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=99.9
Q ss_pred CEEEEcCc----cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHH------------------h
Q 006859 353 PLAIDGGR----HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA------------------Q 410 (628)
Q Consensus 353 ~l~~~~~~----~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~------------------~ 410 (628)
++++.|+. +++++++++++ + |++++|+||||||||||+|+|+|+. -. +
T Consensus 6 ~l~~~y~~~~~~~~il~~vsl~i--------~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 6 NVGITLSGKGYERFSLENINLEV--------N-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEE--------C-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTT
T ss_pred EEEEEeCCCCccceeEEeeeEEE--------C-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhh
Confidence 36777765 55665544433 4 8999999999999999999999964 10 2
Q ss_pred cCCcccCCCC---Cc---------------hHHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCC
Q 006859 411 IGCYVPAHFS---TI---------------RVVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDEL 470 (628)
Q Consensus 411 ~g~~v~~~~~---~i---------------~~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~ 470 (628)
+|.|+|+... ++ ..+..++..+++. +...+..+++|+|++|+..+++++ .+|++++||||
T Consensus 76 i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP 155 (263)
T 2pjz_A 76 YSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEP 155 (263)
T ss_dssp EEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred eEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 2325554421 11 1234566778888 888889999999999988888776 88999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 471 GRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 471 ~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
++|+|+..... +.+.+.+...+++++||+.+.
T Consensus 156 ts~LD~~~~~~----l~~~L~~~~~tviivtHd~~~ 187 (263)
T 2pjz_A 156 FENVDAARRHV----ISRYIKEYGKEGILVTHELDM 187 (263)
T ss_dssp TTTCCHHHHHH----HHHHHHHSCSEEEEEESCGGG
T ss_pred ccccCHHHHHH----HHHHHHHhcCcEEEEEcCHHH
Confidence 99988755444 334444322299999999543
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.78 E-value=2.8e-19 Score=180.60 Aligned_cols=153 Identities=12% Similarity=0.156 Sum_probs=101.1
Q ss_pred ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCCCc--hHHHH--
Q 006859 360 RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFSTI--RVVDR-- 427 (628)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~~i--~~~~~-- 427 (628)
.+++++++++++. +|++++|+||||||||||+|+|+|+. +..++| |+|+....+ .+.+.
T Consensus 50 ~~~vl~~isl~i~--------~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~l~~~tv~enl~ 120 (290)
T 2bbs_A 50 GTPVLKDINFKIE--------RGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQNSWIMPGTIKENII 120 (290)
T ss_dssp CCCSEEEEEEEEC--------TTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEE-EECSSCCCCSSBHHHHHH
T ss_pred CceEEEeeEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEE-EEeCCCccCcccHHHHhh
Confidence 4678999999998 99999999999999999999999953 222455 666543211 12221
Q ss_pred -----------HHhhcCCccccc-----------cCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHH
Q 006859 428 -----------IFTRMGTVDNLE-----------SNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAW 484 (628)
Q Consensus 428 -----------~~~~~~~~~~~~-----------~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~ 484 (628)
.+...++.+.+. ...+.+|+|++|+..+++++ .+|++++||||++|+|+.....+..
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 200 (290)
T 2bbs_A 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200 (290)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHH
Confidence 222233332221 22368999999988888776 8899999999999998865444322
Q ss_pred HHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 485 SCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 485 ~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
.++..+ ..+.+++++||+.+... .++++ +.+.+|++.
T Consensus 201 ~ll~~~-~~~~tviivtHd~~~~~---~~d~i------~~l~~G~i~ 237 (290)
T 2bbs_A 201 SCVCKL-MANKTRILVTSKMEHLK---KADKI------LILHEGSSY 237 (290)
T ss_dssp HCCCCC-TTTSEEEEECCCHHHHH---HSSEE------EEEETTEEE
T ss_pred HHHHHh-hCCCEEEEEecCHHHHH---cCCEE------EEEECCeEE
Confidence 212112 24789999999965543 35554 334566554
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.77 E-value=2.2e-18 Score=191.19 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=108.4
Q ss_pred CCEEEEcCcc-CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH------H-------H---------
Q 006859 352 GPLAIDGGRH-PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV------I-------L--------- 408 (628)
Q Consensus 352 ~~l~~~~~~~-~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~------~-------~--------- 408 (628)
.++++.||.. .++.+++ .+. +|++++|+||||||||||||+|+|+. + +
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~--------~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~ 165 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVK--------DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCC--------TTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHH
T ss_pred CCeEEEECCCCeeeCCCC-CCC--------CCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehh
Confidence 3599999877 4888888 777 99999999999999999999999932 0 0
Q ss_pred -------H---hcCCcccCCC--------CCc----------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 -------A---QIGCYVPAHF--------STI----------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 -------~---~~g~~v~~~~--------~~i----------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
. .++ ++++.. +.+ ..+..++..+|+.+..++..+++|+|++|+..+++++
T Consensus 166 ~~~~~~~~~~~~i~-~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 166 NYFERLKNGEIRPV-VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp HHHHHHHHTSCCCE-EECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcceE-EeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence 0 011 111110 010 1234567778888888889999999999998888777
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.+|+++|||||++|+|+.....+. .+++.+.+.|.+++++||+.++.
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~-~~L~~l~~~g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVA-RVIRRLANEGKAVLVVEHDLAVL 291 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEECSCHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhcCCEEEEEecChHHH
Confidence 889999999999999986655543 45555655699999999996543
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.76 E-value=3.1e-18 Score=187.49 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=103.5
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCch----------
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIR---------- 423 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~---------- 423 (628)
+...|+.. .+...++++. +|++++|+||||||||||+|+|+| ..++.+|.+.
T Consensus 275 l~~~~~~~-~l~~~~~~i~--------~Gei~~i~G~nGsGKSTLl~~l~G---------l~~p~~G~i~~~~~~i~~~~ 336 (538)
T 3ozx_A 275 IIKKLGDF-QLVVDNGEAK--------EGEIIGILGPNGIGKTTFARILVG---------EITADEGSVTPEKQILSYKP 336 (538)
T ss_dssp EEEEETTE-EEEECCEEEE--------TTCEEEEECCTTSSHHHHHHHHTT---------SSCCSBCCEESSCCCEEEEC
T ss_pred eEEEECCE-EEEeccceEC--------CCCEEEEECCCCCCHHHHHHHHhC---------CCCCCCcEEEECCeeeEeec
Confidence 55555542 2333445555 899999999999999999999999 3333333221
Q ss_pred ----------------------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCC
Q 006859 424 ----------------------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRAT 474 (628)
Q Consensus 424 ----------------------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt 474 (628)
....++..+++.+..++.++++|+|++|+..+++.+ .+|+++|||||++|+
T Consensus 337 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gL 416 (538)
T 3ozx_A 337 QRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYL 416 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred hhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 123445566777778889999999999998888776 889999999999999
Q ss_pred ChHHHHHHHHHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 475 SSSDGFAIAWSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 475 ~~~~~~~~~~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+.....+.. ++..+. +.+.+++++|||.+ .....+++|
T Consensus 417 D~~~~~~i~~-~l~~l~~~~g~tvi~vsHdl~--~~~~~aDri 456 (538)
T 3ozx_A 417 DVEERYIVAK-AIKRVTRERKAVTFIIDHDLS--IHDYIADRI 456 (538)
T ss_dssp CHHHHHHHHH-HHHHHHHHTTCEEEEECSCHH--HHHHHCSEE
T ss_pred CHHHHHHHHH-HHHHHHHhCCCEEEEEeCCHH--HHHHhCCEE
Confidence 9876666544 444444 57899999999954 444445655
No 49
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.75 E-value=2e-17 Score=184.31 Aligned_cols=160 Identities=13% Similarity=0.191 Sum_probs=112.6
Q ss_pred CCEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 352 GPLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 352 ~~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
.++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+. +.
T Consensus 345 ~~v~~~y~~~~~~~l~~i~l~i~--------~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 345 KDVTFTYQGKEKPALSHVSFSIP--------QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred EEEEEEcCCCCccccccceEEEC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 357788874 789999999999 99999999999999999999999953 23
Q ss_pred HhcCCcccCCCCCch------------------HHHHHHhhcCCccccc-----------cCcCchHHHHHHHHHHHHhC
Q 006859 409 AQIGCYVPAHFSTIR------------------VVDRIFTRMGTVDNLE-----------SNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 409 ~~~g~~v~~~~~~i~------------------~~~~~~~~~~~~~~~~-----------~~~s~~s~~~~~~~~i~~~~ 459 (628)
.++| ++|++...+. ...+.+...++.+.+. .+...+|+|++|+..+++++
T Consensus 417 ~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 417 RHFA-LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred cCeE-EEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 3566 7776542110 1122333444443332 33468999999988888776
Q ss_pred -CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 460 -SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
.+|+++++|||+++.|+.....+.. .+..+. .++|++++||+.+... .++++ +.+++|+++
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~---~~d~i------~~l~~G~i~ 557 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQA-ALDELQ-KNKTVLVIAHRLSTIE---QADEI------LVVDEGEII 557 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHH-HHHHHc-CCCEEEEEecCHHHHH---hCCEE------EEEECCEEE
Confidence 8899999999999999866555443 333343 3899999999965443 35555 334555554
No 50
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.75 E-value=1.3e-17 Score=185.91 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=114.0
Q ss_pred CEEEEcCc--cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGGR--HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~~--~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 346 ~v~~~y~~~~~~~l~~v~~~i~--------~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 346 NVTFTYPGREVPALRNINLKIP--------AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp EEEECSSSSSCCSEEEEEEEEC--------TTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEcCCCCCccccceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHh
Confidence 47778873 789999999999 99999999999999999999999953 345
Q ss_pred hcCCcccCCCCCc--h----------------HHHHHHhhcCCcccc-----------ccCcCchHHHHHHHHHHHHhC-
Q 006859 410 QIGCYVPAHFSTI--R----------------VVDRIFTRMGTVDNL-----------ESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 410 ~~g~~v~~~~~~i--~----------------~~~~~~~~~~~~~~~-----------~~~~s~~s~~~~~~~~i~~~~- 459 (628)
++| ++|++...+ + ...+.+...++.+.+ ..+...+|+|++|+..+++++
T Consensus 418 ~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 418 QVA-LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp TEE-EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hCe-EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 677 777654211 1 122333344443332 234578999999998888876
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
.+|+++++|||+++.|+.....+.. .+..+.+ ++|++++||+++... .++++ +.+++|+++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~-~~tvi~itH~~~~~~---~~d~i------~~l~~G~i~ 557 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQA-ALDELQK-NRTSLVIAHRLSTIE---QADEI------VVVEDGIIV 557 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHH-HHHHHHT-TSEEEEECSCGGGTT---TCSEE------EEEETTEEE
T ss_pred hCCCEEEEECccccCCHHHHHHHHH-HHHHHhC-CCEEEEEeccHHHHH---hCCEE------EEEECCEEE
Confidence 8899999999999999876655444 3444444 899999999965432 35655 444566654
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.75 E-value=9.6e-18 Score=186.02 Aligned_cols=151 Identities=15% Similarity=0.250 Sum_probs=108.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH--------HHHhcCCcccCCCCC---
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV--------ILAQIGCYVPAHFST--- 421 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~--------~~~~~g~~v~~~~~~--- 421 (628)
++++.|+.. .++.+++++. +|++++|+||||||||||+|+|+|+. +-.++| |+|+....
T Consensus 362 ~l~~~~~~~-~l~~~~~~v~--------~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~-~v~Q~~~~~~~ 431 (607)
T 3bk7_A 362 RLVKDYGSF-KLEVEPGEIR--------KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA-YKPQYIKAEYE 431 (607)
T ss_dssp CEEEECSSC-EEEECCEEEE--------TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEE-EECSSCCCCCS
T ss_pred ceEEEecce-EEEecccccC--------CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEE-EEecCccCCCC
Confidence 466666542 4555566666 89999999999999999999999943 112344 55554311
Q ss_pred --ch---------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHH
Q 006859 422 --IR---------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIA 483 (628)
Q Consensus 422 --i~---------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~ 483 (628)
+. ....++..+++.+...+.++++|+|++|+..+++.+ .+|+++|||||++|+|+.....+.
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~ 511 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHH
Confidence 10 113345667888888889999999999988888765 789999999999999987666644
Q ss_pred HHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 484 WSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 484 ~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
. ++..+. +.|.+++++|||.++ +...++++
T Consensus 512 ~-~l~~l~~~~g~tvi~vsHd~~~--~~~~adrv 542 (607)
T 3bk7_A 512 R-AIRHLMEKNEKTALVVEHDVLM--IDYVSDRL 542 (607)
T ss_dssp H-HHHHHHHHTTCEEEEECSCHHH--HHHHCSEE
T ss_pred H-HHHHHHHhCCCEEEEEeCCHHH--HHHhCCEE
Confidence 4 444444 568999999999544 33444554
No 52
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=2.6e-17 Score=183.19 Aligned_cols=159 Identities=13% Similarity=0.185 Sum_probs=113.8
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|+ .+++|+++++++. +|++++|+||||||||||+++|+|+. +..
T Consensus 346 ~v~~~y~~~~~~~l~~isl~i~--------~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 346 NVEFRYFENTDPVLSGVNFSVK--------PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp EEEECSSSSSCCSEEEEEEEEC--------TTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred EEEEEcCCCCCcceeceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence 4677773 5689999999999 99999999999999999999999943 456
Q ss_pred hcCCcccCCCCCch--HH---------------HHHHhhc-----------CCccccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTIR--VV---------------DRIFTRM-----------GTVDNLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i~--~~---------------~~~~~~~-----------~~~~~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| ++|++...+. +. .+..... |.+..+.+....+|+|++|+..+++++ .
T Consensus 418 ~i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 418 HIS-AVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HEE-EECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred heE-EECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 777 7877643211 11 1112222 223334456678999999999888877 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+|++++||||+++.|+.....+...+ ..+ ..++|++++||+++... .++++ +++++|+++
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l-~~~-~~~~tvi~itH~l~~~~---~~d~i------~vl~~G~i~ 556 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGL-KRY-TKGCTTFIITQKIPTAL---LADKI------LVLHEGKVA 556 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHH-HHH-STTCEEEEEESCHHHHT---TSSEE------EEEETTEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHH-HHh-CCCCEEEEEecChHHHH---hCCEE------EEEECCEEE
Confidence 89999999999999987666554433 333 35899999999965432 45655 445566654
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.74 E-value=1.1e-17 Score=183.70 Aligned_cols=151 Identities=14% Similarity=0.219 Sum_probs=105.9
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH--------HHhcCCcccCCCCC---
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI--------LAQIGCYVPAHFST--- 421 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~--------~~~~g~~v~~~~~~--- 421 (628)
.+++.|+.. .++.+++++. +|++++|+||||||||||+|+|+|+.- -..+| |+|++...
T Consensus 292 ~l~~~~~~~-~l~~~~~~i~--------~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~-~v~Q~~~~~~~ 361 (538)
T 1yqt_A 292 RLVKDYGSF-RLEVEPGEIK--------KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA-YKPQYIKADYE 361 (538)
T ss_dssp CEEEEETTE-EEEECCEEEE--------TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEE-EECSSCCCCCS
T ss_pred eEEEEECCE-EEEeCccccC--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEE-EEecCCcCCCC
Confidence 355555542 3555555566 899999999999999999999999431 11344 55554311
Q ss_pred ch-----------------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHH
Q 006859 422 IR-----------------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIA 483 (628)
Q Consensus 422 i~-----------------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~ 483 (628)
.. ....++..+++.+...+.++++|+|++|+..+++.+ .+|+++|||||++|.|......+.
T Consensus 362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 362 GTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp SBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 112334556777777888999999999988888765 789999999999999987666644
Q ss_pred HHHHHHHH-hCCcEEEEEcCChhHHHHhhhCcce
Q 006859 484 WSCCEHLL-SLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 484 ~~~~~~l~-~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
. ++..+. +.|.+++++|||.+ .+...++++
T Consensus 442 ~-~l~~l~~~~g~tvi~vsHd~~--~~~~~~drv 472 (538)
T 1yqt_A 442 R-AIRHLMEKNEKTALVVEHDVL--MIDYVSDRL 472 (538)
T ss_dssp H-HHHHHHHHHTCEEEEECSCHH--HHHHHCSEE
T ss_pred H-HHHHHHHhCCCEEEEEeCCHH--HHHHhCCEE
Confidence 4 444444 56899999999954 444445555
No 54
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=2e-17 Score=184.71 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=106.9
Q ss_pred CEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHHh
Q 006859 353 PLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILAQ 410 (628)
Q Consensus 353 ~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~~ 410 (628)
++++.|+ ++++++++++++. +|++++|+||||||||||+|+|+|+. +..+
T Consensus 359 ~v~~~y~~~~~~l~~isl~i~--------~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 359 NVWFSYDKKKPVLKDITFHIK--------PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp EEECCSSSSSCSCCSEEEECC--------TTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred EEEEECCCCCccccceEEEEc--------CCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 3666675 4679999998888 99999999999999999999999943 3456
Q ss_pred cCCcccCCCCCc--hHHH---------------HHHhhcCCcccccc-----------CcCchHHHHHHHHHHHHhC-CC
Q 006859 411 IGCYVPAHFSTI--RVVD---------------RIFTRMGTVDNLES-----------NSSTFMTEMKETAFVMQNV-SE 461 (628)
Q Consensus 411 ~g~~v~~~~~~i--~~~~---------------~~~~~~~~~~~~~~-----------~~s~~s~~~~~~~~i~~~~-~~ 461 (628)
+| ++|++...+ ++.+ +.+...+..+.+.. ....+|+|++|+..+++++ .+
T Consensus 431 i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 431 IG-IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EE-EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred eE-EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 77 777664221 1111 22222233222222 2257999999998888877 88
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
|+++++|||+++.|+.....+...+ ..+. .++|++++||+.+.... ++++
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l-~~~~-~~~t~i~itH~l~~~~~---~d~i 559 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAM-WKLM-EGKTSIIIAHRLNTIKN---ADLI 559 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHH-HHHH-TTSEEEEESCCTTHHHH---CSEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHH-HHHc-CCCEEEEEecCHHHHHc---CCEE
Confidence 9999999999999987666654433 3333 58999999999775443 5555
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-17 Score=184.55 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=104.2
Q ss_pred EEEEcCc-cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH--------HhcCCcccCCCC----
Q 006859 354 LAIDGGR-HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL--------AQIGCYVPAHFS---- 420 (628)
Q Consensus 354 l~~~~~~-~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~--------~~~g~~v~~~~~---- 420 (628)
+.+.|.. .+++.++++++.+-.+ ..|++++|+||||||||||+|+|+|+.-- ..++ ++|+...
T Consensus 352 ~~~~y~~~~~~l~~vsl~v~~G~~---~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~-~~~q~~~~~~~ 427 (608)
T 3j16_B 352 RAFSYPSLKKTQGDFVLNVEEGEF---SDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS-MKPQKIAPKFP 427 (608)
T ss_dssp SCCEECCEEEECSSCEEEECCEEC---CTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEE-EECSSCCCCCC
T ss_pred eeEEecCcccccCceEEEEecCcc---ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEE-EecccccccCC
Confidence 3444443 3456666655551111 14588999999999999999999993200 0111 2332210
Q ss_pred -Cc---------------hHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHH
Q 006859 421 -TI---------------RVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIA 483 (628)
Q Consensus 421 -~i---------------~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~ 483 (628)
.+ .....++..+++.+..++.++++|+|++|+..+++.+ .+|+++|||||++|+|+.....+.
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~ 507 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHH
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH
Confidence 00 1223455667777778889999999999999888877 789999999999999987666644
Q ss_pred HHHHHHH-HhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 484 WSCCEHL-LSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 484 ~~~~~~l-~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
. ++..+ .+.|.+++++||+.+ .....++++
T Consensus 508 ~-ll~~l~~~~g~tviivtHdl~--~~~~~aDrv 538 (608)
T 3j16_B 508 K-VIRRFILHNKKTAFIVEHDFI--MATYLADKV 538 (608)
T ss_dssp H-HHHHHHHHHTCEEEEECSCHH--HHHHHCSEE
T ss_pred H-HHHHHHHhCCCEEEEEeCCHH--HHHHhCCEE
Confidence 4 44444 456999999999954 444445554
No 56
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.72 E-value=1.1e-16 Score=178.73 Aligned_cols=160 Identities=14% Similarity=0.206 Sum_probs=112.8
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
++++.|+. +++++++++++. +|++++|+||||||||||+|+|+|+. +.
T Consensus 346 ~v~~~y~~~~~~~vl~~isl~i~--------~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 346 NVHFAYPARPEVPIFQDFSLSIP--------SGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEECSSCTTSEEEEEEEEEEC--------TTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEeCCCCCCccccceEEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHH
Confidence 47778864 468999998888 99999999999999999999999953 34
Q ss_pred HhcCCcccCCCCCc--h------------------HHHHHHhhcCCcccc-----------ccCcCchHHHHHHHHHHHH
Q 006859 409 AQIGCYVPAHFSTI--R------------------VVDRIFTRMGTVDNL-----------ESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 409 ~~~g~~v~~~~~~i--~------------------~~~~~~~~~~~~~~~-----------~~~~s~~s~~~~~~~~i~~ 457 (628)
.++| ++|++...+ + ...+.+...++.+.+ ..+...+|+|++|+..+++
T Consensus 418 ~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 418 SKIG-TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp HSEE-EECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred hceE-EEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 4677 777654211 1 122333444443322 2233789999999988888
Q ss_pred hC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 458 NV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 458 ~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
++ .+|+++++|||+++.|+.....+.. .+..+.+ ++|++++||+.+... .++++ +.+++|+++.
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~-~l~~~~~-~~tvi~itH~~~~~~---~~d~i------~~l~~G~i~~ 561 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQE-ALDRLMD-GRTVLVIAHRLSTIK---NANMV------AVLDQGKITE 561 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHH-HHHHHHT-TSEEEEECCCHHHHH---HSSEE------EEEETTEEEE
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHH-HHHHHhc-CCEEEEEecCHHHHH---cCCEE------EEEECCEEEE
Confidence 76 8899999999999999865554433 3444444 799999999965443 35655 4456776653
No 57
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.72 E-value=5.6e-17 Score=180.43 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=111.5
Q ss_pred CEEEEcC--ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HHH
Q 006859 353 PLAIDGG--RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------ILA 409 (628)
Q Consensus 353 ~l~~~~~--~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~~ 409 (628)
++++.|+ ..++|+++++++. +|++++|+||||||||||+|+|+|+. +..
T Consensus 344 ~v~~~y~~~~~~~l~~isl~i~--------~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 344 HVSFQYNDNEAPILKDINLSIE--------KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp EEEECSCSSSCCSEEEEEEEEC--------TTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred EEEEEcCCCCCcceeeeEEEEC--------CCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 4677775 3579999999999 99999999999999999999999943 345
Q ss_pred hcCCcccCCCCCc--hH---------------HHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-C
Q 006859 410 QIGCYVPAHFSTI--RV---------------VDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV-S 460 (628)
Q Consensus 410 ~~g~~v~~~~~~i--~~---------------~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~-~ 460 (628)
++| ++|++...+ ++ ..+.....+..+ .+..+...+|+|++|+..+++++ .
T Consensus 416 ~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 416 QIG-LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp TEE-EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heE-EEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 677 777654221 11 112222233322 22334467999999998888877 8
Q ss_pred CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 461 ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 461 ~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+|+++++|||+++.|+.....+. ..+..+ ..++|++++||+++.. ..++++ +.+++|++..
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~-~~l~~~-~~~~t~i~itH~l~~~---~~~d~i------~~l~~G~i~~ 555 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQ-EALDVL-SKDRTTLIVAHRLSTI---THADKI------VVIENGHIVE 555 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHH-HHHHHH-TTTSEEEEECSSGGGT---TTCSEE------EEEETTEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHH-HHHHHH-cCCCEEEEEecCHHHH---HcCCEE------EEEECCEEEE
Confidence 89999999999999986544433 333434 3478999999996643 235655 4456666653
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.70 E-value=9.2e-17 Score=184.19 Aligned_cols=149 Identities=16% Similarity=0.172 Sum_probs=109.6
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH-------HhcCCcccCCC----CC
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL-------AQIGCYVPAHF----ST 421 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~-------~~~g~~v~~~~----~~ 421 (628)
++++.|+++++++++++++. +|++++|+||||||||||+|+|+|-.+. ..++ |+++.. ..
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~--------~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~-~v~q~~~~~~~~ 510 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLK--------RARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTV-YVEHDIDGTHSD 510 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEE--------TTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEE-ETTCCCCCCCTT
T ss_pred eEEEEECCEEeEecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEE-EEcccccccccC
Confidence 47888999999999999999 9999999999999999999999961110 0122 444321 11
Q ss_pred c--------------hHHHHHHhhcCCc-cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHH
Q 006859 422 I--------------RVVDRIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWS 485 (628)
Q Consensus 422 i--------------~~~~~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~ 485 (628)
. ..+...+..+|+. +...+..+++|+|++|+..+++.+ .+|+++|||||++|+|+.....
T Consensus 511 ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~---- 586 (986)
T 2iw3_A 511 TSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAW---- 586 (986)
T ss_dssp SBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHH----
T ss_pred CcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH----
Confidence 1 1234567788884 667888999999999988888776 8899999999988888754443
Q ss_pred HHHHHHhCCcEEEEEcCChhHHHHhhhCcce
Q 006859 486 CCEHLLSLKAYTIFASHMENLSELATIYPNV 516 (628)
Q Consensus 486 ~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v 516 (628)
+.+.+.+.|.+++++||+.+. +...++++
T Consensus 587 l~~~L~~~g~tvIivSHdl~~--l~~~adri 615 (986)
T 2iw3_A 587 LVNYLNTCGITSITISHDSVF--LDNVCEYI 615 (986)
T ss_dssp HHHHHHHSCSEEEEECSCHHH--HHHHCSEE
T ss_pred HHHHHHhCCCEEEEEECCHHH--HHHhCCEE
Confidence 333444468999999999543 33344444
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=3.4e-17 Score=187.77 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=62.3
Q ss_pred HHHHhhcCCccc--cccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 426 DRIFTRMGTVDN--LESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 426 ~~~~~~~~~~~~--~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
...+..+|+... ..+..+.+|+|++|+..+++.+ .+|+++|||||++|+|+... ..+.+.+.+.+.+++++||
T Consensus 881 ~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~----~~L~~~L~~~g~tVIiISH 956 (986)
T 2iw3_A 881 EEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL----GALSKALKEFEGGVIIITH 956 (986)
T ss_dssp HHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHH----HHHHHHHHSCSSEEEEECS
T ss_pred HHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHH----HHHHHHHHHhCCEEEEEEC
Confidence 345566777543 4667889999999988887765 88999999999888887442 3455666666789999999
Q ss_pred ChhHHHHhhhCcce
Q 006859 503 MENLSELATIYPNV 516 (628)
Q Consensus 503 ~~~l~~~~~~~~~v 516 (628)
+.+ .+...++++
T Consensus 957 D~e--~v~~l~DrV 968 (986)
T 2iw3_A 957 SAE--FTKNLTEEV 968 (986)
T ss_dssp CHH--HHTTTCCEE
T ss_pred CHH--HHHHhCCEE
Confidence 944 444555554
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.61 E-value=3.5e-15 Score=169.01 Aligned_cols=84 Identities=12% Similarity=0.089 Sum_probs=62.5
Q ss_pred HhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-C---CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 429 FTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-S---ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 429 ~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~---~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
+..+++.. ...+..+++|+|++|+..+++++ . +|+++++|||++|+|+.....+.. ++..+.+.|.|++++||+
T Consensus 527 l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~-~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 527 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLD-VLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp HHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHH-HHHHHHHTTCEEEEECCC
T ss_pred HHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCC
Confidence 34455543 34677889999999999998887 3 357999999999999977666444 555566679999999999
Q ss_pred hhHHHHhhhCcce
Q 006859 504 ENLSELATIYPNV 516 (628)
Q Consensus 504 ~~l~~~~~~~~~v 516 (628)
+++. ..++++
T Consensus 606 ~~~~---~~~d~i 615 (670)
T 3ux8_A 606 LDVI---KTADYI 615 (670)
T ss_dssp HHHH---TTCSEE
T ss_pred HHHH---HhCCEE
Confidence 6643 335655
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.61 E-value=1.3e-15 Score=142.08 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=78.7
Q ss_pred CCceEEEEecCCCChhHHHH------------HHHHHHHHHhcCCcccCCCCCchHHHHHH----------hhcCCcccc
Q 006859 381 AANMVIVTGPNMSGKSTYLQ------------QVCLIVILAQIGCYVPAHFSTIRVVDRIF----------TRMGTVDNL 438 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk------------~i~g~~~~~~~g~~v~~~~~~i~~~~~~~----------~~~~~~~~~ 438 (628)
+|++++|+||||||||||+| .+.| +++++.+...+.+..+ ...|.....
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRG---------LMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVV 78 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHH---------HHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHH---------HhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 89999999999999999999 6666 7777776655443221 122322222
Q ss_pred ccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHH---------------HHHHHHHHHHHHhCCcEEEEEcC
Q 006859 439 ESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDG---------------FAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 439 ~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~---------------~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
......+++++|+..+++.+ .+|.++++|||+.|+++... .......+..+.+.|.+++++||
T Consensus 79 -~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH 157 (171)
T 4gp7_A 79 -DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILN 157 (171)
T ss_dssp -ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEEC
T ss_pred -ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeC
Confidence 22334588888888888776 78999999999665554311 01112233334445999999999
Q ss_pred ChhHHH
Q 006859 503 MENLSE 508 (628)
Q Consensus 503 ~~~l~~ 508 (628)
+++...
T Consensus 158 ~~~~~~ 163 (171)
T 4gp7_A 158 SPEEVE 163 (171)
T ss_dssp SHHHHH
T ss_pred CHHHhh
Confidence 965443
No 62
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.57 E-value=3.7e-15 Score=179.43 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=109.1
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
++++.|+. .|+|+++++++. +|++++|+||||||||||+++|+|+. +.
T Consensus 392 ~v~~~y~~~~~~~vL~~isl~i~--------~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 392 NIHFSYPSRKEVQILKGLNLKVK--------SGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp EEEECCSSTTSCCSEEEEEEEEC--------TTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEcCCCCCCcceecceEEEc--------CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 46777864 479999999999 99999999999999999999999943 45
Q ss_pred HhcCCcccCCCCC----ch-------------HHHHHHhhcCCc-----------cccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHFST----IR-------------VVDRIFTRMGTV-----------DNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~~~----i~-------------~~~~~~~~~~~~-----------~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| +||++... +. ...+.....+.. ..+......+|+|++|+..+++++
T Consensus 464 ~~i~-~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 464 EIIG-VVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHEE-EECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred hheE-EEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 5677 78776421 11 111112222222 123334567999999999998887
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
.+|++++||||+++.|+..... ....++.+ ..|+|++++||+++ .+.. ++++ +++++|+++
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~-i~~~l~~~-~~~~t~i~itH~l~--~i~~-~d~i------~vl~~G~i~ 603 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAV-VQAALDKA-REGRTTIVIAHRLS--TVRN-ADVI------AGFDGGVIV 603 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHH-HHHHHHHH-HTTSEEEEECSCHH--HHTT-CSEE------EECSSSCCC
T ss_pred cCCCEEEEECCCCCCCHHHHHH-HHHHHHHH-cCCCEEEEEecCHH--HHHc-CCEE------EEEECCEEE
Confidence 8899999999988888754333 23333333 35899999999954 4433 5655 444555554
No 63
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.57 E-value=3.7e-15 Score=179.42 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=109.5
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
++++.|+. +|+|+++++++. +|++++|+||||||||||+++|+|+. +.
T Consensus 1035 ~v~~~y~~~~~~~~l~~vsl~i~--------~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1035 GVVFNYPTRPSIPVLQGLSLEVK--------KGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp EEEBCCSCGGGCCSBSSCCEEEC--------SSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred EEEEECCCCCCCeeecceeEEEc--------CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence 35666753 478999999999 99999999999999999999999953 33
Q ss_pred HhcCCcccCCCCCc--h-----------------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHh
Q 006859 409 AQIGCYVPAHFSTI--R-----------------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 409 ~~~g~~v~~~~~~i--~-----------------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~ 458 (628)
.++| +||++...+ + .........++.+. +..+.+.+|+|++|+..++++
T Consensus 1107 ~~i~-~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1107 AQLG-IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TSCE-EEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred hceE-EECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 4566 777664211 0 11122222232222 223345799999999998887
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeE
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDF 532 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 532 (628)
+ .+|++++||||++|.|+.....+... ++.+ ..|+|++++||+++. + ..++++ +++++|+++.
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~-l~~~-~~~~tvi~isH~l~~--i-~~~dri------~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEA-LDKA-REGRTCIVIAHRLST--I-QNADLI------VVIQNGKVKE 1249 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHH-HHHH-SSSSCEEEECSCTTG--G-GSCSEE------EEEETBEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHh-CCCCEEEEEecCHHH--H-HcCCEE------EEEECCEEEE
Confidence 7 88999999999999998654443333 3332 358999999999654 3 236665 4455666543
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.53 E-value=6.5e-14 Score=159.42 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=66.1
Q ss_pred HHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEc
Q 006859 427 RIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNVS----ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFAS 501 (628)
Q Consensus 427 ~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~~----~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~t 501 (628)
..+..+|+.. .+.+..+++|+|++|+..+++.+. .|+++|||||++|+|+.+...+. .++..+.+.|.+++++|
T Consensus 827 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~TVIvis 905 (972)
T 2r6f_A 827 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDTVLVIE 905 (972)
T ss_dssp HHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEc
Confidence 4566677766 677889999999999888887763 36999999999999997766644 45566677799999999
Q ss_pred CChhHHHHhhhCcce
Q 006859 502 HMENLSELATIYPNV 516 (628)
Q Consensus 502 H~~~l~~~~~~~~~v 516 (628)
|+++.. ..++++
T Consensus 906 Hdl~~i---~~aDrI 917 (972)
T 2r6f_A 906 HNLDVI---KTADYI 917 (972)
T ss_dssp CCHHHH---TTCSEE
T ss_pred CCHHHH---HhCCEE
Confidence 996643 245554
No 65
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.52 E-value=8.1e-14 Score=168.25 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=111.1
Q ss_pred CEEEEcC---ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGG---RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~---~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
++++.|. ..|+|+++++++. +|+.++|+||+|||||||+++|.|.. +.
T Consensus 420 nvsF~Y~~~~~~~vL~~isl~i~--------~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 420 NVHFTYPSRPDVPILRGMNLRVN--------AGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp EEEECCSSSTTSCSEEEEEEEEC--------TTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred EeeeeCCCCCCCceeeceEEeec--------CCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 4667775 3578999999999 99999999999999999999999942 55
Q ss_pred HhcCCcccCCCCCch-----------------HHHHHHhhcCCcc-----------ccccCcCchHHHHHHHHHHHHhC-
Q 006859 409 AQIGCYVPAHFSTIR-----------------VVDRIFTRMGTVD-----------NLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 409 ~~~g~~v~~~~~~i~-----------------~~~~~~~~~~~~~-----------~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++| |||++..-+. .+.+.....++.+ .+..+-..+|+|++|+..+++++
T Consensus 492 ~~i~-~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 492 KNVA-VVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hccc-ccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 6777 8877652211 1112222222222 22233456999999998888876
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeeeEe
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLDFK 533 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 533 (628)
.+|+++|||||+++.|+.....+.. .++.+. .++|++++||.+... ..+++| +++++|+++..
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~-~l~~~~-~~~T~iiiaHrls~i---~~aD~I------ivl~~G~ive~ 633 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQ-ALDKAA-KGRTTIIIAHRLSTI---RNADLI------ISCKNGQVVEV 633 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHH-HHHHHH-TTSEEEEECSCTTTT---TTCSEE------EEEETTEEEEE
T ss_pred cCCCEEEEecccccCCHHHHHHHHH-HHHHHh-CCCEEEEEcccHHHH---HhCCEE------EEeeCCeeecc
Confidence 8899999999998888864333333 333332 489999999996533 334555 45567776543
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.52 E-value=9.8e-14 Score=158.57 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=65.6
Q ss_pred HHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEc
Q 006859 427 RIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNVS----ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFAS 501 (628)
Q Consensus 427 ~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~~----~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~t 501 (628)
..+..+|+.. .+.+..+++|+|++|+..+++.+. .|+++|||||++|+|+.+...+. .++..+.+.|.+++++|
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEc
Confidence 3456677765 567888999999999888887763 36999999999999997766644 45566677799999999
Q ss_pred CChhHHHHhhhCcce
Q 006859 502 HMENLSELATIYPNV 516 (628)
Q Consensus 502 H~~~l~~~~~~~~~v 516 (628)
|++++. ..++++
T Consensus 924 Hdl~~i---~~aDrI 935 (993)
T 2ygr_A 924 HNLDVI---KTSDWI 935 (993)
T ss_dssp CCHHHH---TTCSEE
T ss_pred CCHHHH---HhCCEE
Confidence 996643 345555
No 67
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.51 E-value=2.3e-13 Score=156.17 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=63.8
Q ss_pred HHhhcCCcc-ccccCcCchHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 428 IFTRMGTVD-NLESNSSTFMTEMKETAFVMQNVS----ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 428 ~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~~----~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
.+..+|+.. .+.+..+++|+|++|+..+++.+. .|.++|||||++|+|+.+...+. .++..+.+.|.|++++||
T Consensus 788 ~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~TVIvI~H 866 (916)
T 3pih_A 788 VLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNTVIVIEH 866 (916)
T ss_dssp HHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEECC
T ss_pred HHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEeC
Confidence 445566643 346778899999999998888772 36899999999999997766644 455667777999999999
Q ss_pred ChhHHHHhhhCcce
Q 006859 503 MENLSELATIYPNV 516 (628)
Q Consensus 503 ~~~l~~~~~~~~~v 516 (628)
++++ +. .++++
T Consensus 867 dL~~--i~-~ADrI 877 (916)
T 3pih_A 867 NLDV--IK-NADHI 877 (916)
T ss_dssp CHHH--HT-TCSEE
T ss_pred CHHH--HH-hCCEE
Confidence 9654 33 36655
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.50 E-value=1.2e-13 Score=157.08 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=66.0
Q ss_pred HHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhCCC----CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEc
Q 006859 427 RIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNVSE----RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFAS 501 (628)
Q Consensus 427 ~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~~~----~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~t 501 (628)
+++..+|+.. .+.+..+++|+|++|+..+++.+.. |+++|||||++|+|+.+...+. .++..+.+.|.+|+++|
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~tVIvis 790 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGNTVIAVE 790 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCEEEEEC
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEc
Confidence 3455666655 3577889999999999999988733 7999999999999997766644 45666777799999999
Q ss_pred CChhHHHHhhhCcce
Q 006859 502 HMENLSELATIYPNV 516 (628)
Q Consensus 502 H~~~l~~~~~~~~~v 516 (628)
|++++. ..++++
T Consensus 791 Hdl~~i---~~aDri 802 (842)
T 2vf7_A 791 HKMQVV---AASDWV 802 (842)
T ss_dssp CCHHHH---TTCSEE
T ss_pred CCHHHH---HhCCEE
Confidence 995544 345655
No 69
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.50 E-value=5.4e-14 Score=169.77 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=109.6
Q ss_pred CEEEEcCc---cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH---------------------HH
Q 006859 353 PLAIDGGR---HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV---------------------IL 408 (628)
Q Consensus 353 ~l~~~~~~---~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~---------------------~~ 408 (628)
+++++|.. .|+|+++++++. +|+.+||+||+|||||||+++|.++. +.
T Consensus 1081 nVsf~Y~~~~~~~VL~~isl~I~--------~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1081 NVRFAYPERPEIEILKGLSFSVE--------PGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp EEEECCTTSCSSCSEEEEEEEEC--------TTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHH
T ss_pred EEEEeCCCCCCCccccceeEEEC--------CCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHH
Confidence 47777743 479999999999 99999999999999999999999953 56
Q ss_pred HhcCCcccCCCC----Cch---------------HHHHHHhhcCCccc-----------cccCcCchHHHHHHHHHHHHh
Q 006859 409 AQIGCYVPAHFS----TIR---------------VVDRIFTRMGTVDN-----------LESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 409 ~~~g~~v~~~~~----~i~---------------~~~~~~~~~~~~~~-----------~~~~~s~~s~~~~~~~~i~~~ 458 (628)
.++| +||++.. ++. .+.+.+...++.+. +..+-+.+|+|++|+..++++
T Consensus 1153 ~~i~-~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1153 SQIA-IVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp TTEE-EECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred hheE-EECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 6777 7877652 111 11122333333322 223345699999999999888
Q ss_pred C-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh--CCcEEEEEcCChhHHHHhhhCcceeEEEEEEEEeCCeee
Q 006859 459 V-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLS--LKAYTIFASHMENLSELATIYPNVKILHFYVVIRNNRLD 531 (628)
Q Consensus 459 ~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~--~~~~vi~~tH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 531 (628)
+ .+|+++|||||++..|+..... +.+.+.+ .++|+++++|.+.-. ..+++| +++++|+++
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~----Iq~~l~~~~~~~TvI~IAHRLsTi---~~aD~I------~Vld~G~Iv 1294 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKV----VQEALDRAREGRTCIVIAHRLNTV---MNADCI------AVVSNGTII 1294 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHH----HHHHHTTTSSSSEEEEECSSSSTT---TTCSEE------EEESSSSEE
T ss_pred HHhCCCEEEEeCccccCCHHHHHH----HHHHHHHHcCCCEEEEeccCHHHH---HhCCEE------EEEECCEEE
Confidence 7 8899999999977777643332 4444443 489999999995422 234555 455666655
No 70
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.47 E-value=3.2e-15 Score=143.56 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=69.7
Q ss_pred EcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHh-------------------cCCcccC
Q 006859 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQ-------------------IGCYVPA 417 (628)
Q Consensus 357 ~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~-------------------~g~~v~~ 417 (628)
.|+.+++|+++ . +|++++|+||||||||||+|+|+|+ ... +| |+|+
T Consensus 9 ~~g~~~~l~~i----~--------~Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~~~~~~~~~~~~~~ig-~v~q 73 (208)
T 3b85_A 9 TLGQKHYVDAI----D--------TNTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSRIILTRPAVEAGEKLG-FLPG 73 (208)
T ss_dssp SHHHHHHHHHH----H--------HCSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSEEEEEECSCCTTCCCC-SSCC
T ss_pred CHhHHHHHHhc----c--------CCCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeeeEEecCCchhhhcceE-EecC
Confidence 35666777763 4 8999999999999999999999997 222 33 4444
Q ss_pred CCC-Cc-hHHHHHHhhcCC---ccccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 006859 418 HFS-TI-RVVDRIFTRMGT---VDNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLL 491 (628)
Q Consensus 418 ~~~-~i-~~~~~~~~~~~~---~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~ 491 (628)
... .+ ......+..+.. .+.+..-... ..|++|+..+++++ .+|+++|||||++| .... ...++..+
T Consensus 74 ~~~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~-l~~~l~~l- 146 (208)
T 3b85_A 74 TLNEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQ-MKMFLTRL- 146 (208)
T ss_dssp ------CTTTHHHHHHHTTTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHH-HHHHHTTB-
T ss_pred CHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHH-HHHHHHHh-
Confidence 320 11 110000111100 0000000000 11566666666555 78999999999877 1122 22233333
Q ss_pred hCCcEEEEEcCChhHHH
Q 006859 492 SLKAYTIFASHMENLSE 508 (628)
Q Consensus 492 ~~~~~vi~~tH~~~l~~ 508 (628)
+.+.+++ +||+.+..+
T Consensus 147 ~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 147 GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp CTTCEEE-EEEC-----
T ss_pred cCCCEEE-EECCHHHHh
Confidence 4578999 999965443
No 71
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.46 E-value=1e-13 Score=148.19 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHhC-CCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhCcceeEEEE
Q 006859 445 FMTEMKETAFVMQNV-SER--SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIYPNVKILHF 521 (628)
Q Consensus 445 ~s~~~~~~~~i~~~~-~~~--~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~~~v~~~~~ 521 (628)
+|+|++++..++..+ .+| +++|||||++|+|+.....+.. .+..+. .+.+++++||++++.. .++++...
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~-~~~~vi~itH~~~~~~---~~d~i~~l-- 368 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA-DTRQVLVVTHLAQIAA---RAHHHYKV-- 368 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT-TTSEEEEECSCHHHHT---TCSEEEEE--
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh-CCCEEEEEeCcHHHHh---hcCeEEEE--
Confidence 599999877777654 677 9999999999998865555333 334344 4899999999976543 34544222
Q ss_pred EEEEeCCeeeEeeeeecCCCCCCcHHHHHHHHC-C-CCHHHHHHHHHHH
Q 006859 522 YVVIRNNRLDFKFQLKDGPRHVPHYGLLLAEVA-G-LPSTVIETARSIT 568 (628)
Q Consensus 522 ~~~~~~~~~~~~~~l~~G~~~~~~~a~~la~~~-g-~p~~~l~~a~~~~ 568 (628)
.-...+|++........+.. --..+|+++ | +..+.+..|++++
T Consensus 369 ~k~~~~G~~~~~~~~l~~~~----~~~ei~~~~~g~~~~~~~~~a~~~~ 413 (415)
T 4aby_A 369 EKQVEDGRTVSHVRLLTGDE----RLEEIARMLSGNTSEAALEHARELL 413 (415)
T ss_dssp EEEEETTEEEEEEEECCSHH----HHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccCCceEEEEEECCchh----hHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 12226676654333222211 123455544 4 5677777777654
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.44 E-value=6.5e-14 Score=131.13 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=72.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC------CCchHH-------HHHHhhcCCc--cccccCcCchHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF------STIRVV-------DRIFTRMGTV--DNLESNSSTFMTE 448 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~------~~i~~~-------~~~~~~~~~~--~~~~~~~s~~s~~ 448 (628)
.++|+||||||||||+|+|+|+.-..-.| +.+... ..+.+. ..++..++.. +...+....+|+|
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g-~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIG-FWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEE-EEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCC-EEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence 58999999999999999999965211112 111000 000000 0001111111 1344556779999
Q ss_pred HHHHHHHHHh------CCCCcEEEEeC--CCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC---ChhHHH
Q 006859 449 MKETAFVMQN------VSERSLIVMDE--LGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH---MENLSE 508 (628)
Q Consensus 449 ~~~~~~i~~~------~~~~~l~llDE--~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH---~~~l~~ 508 (628)
+++...++++ +.+|+++++|| |+.+.|+.. ...+.+.+.+.+.+++++|| +.++.+
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~----~~~l~~~l~~~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF----RDLVRQIMHDPNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHH----HHHHHHHHTCTTSEEEEECCSSCCSHHHH
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHH----HHHHHHHHhcCCCeEEEEEccCCCchHHH
Confidence 9998888774 58899999999 866666532 33455555566777888886 544443
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.42 E-value=4.3e-13 Score=140.28 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=55.4
Q ss_pred ccCcCchHHHHHHHHHHHHhC-------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 439 ESNSSTFMTEMKETAFVMQNV-------SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 439 ~~~~s~~s~~~~~~~~i~~~~-------~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
.+.++++|+|++|+..++.++ .+|++++||||+.|+|+.....+. .++..+.+.|.+++++||+.++. .
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~tvi~itH~~~~~---~ 349 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKVIVFITHDREFS---E 349 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSEEEEEESCHHHH---T
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCEEEEEecchHHH---H
Confidence 356778999999987765554 489999999999999986655543 35555666789999999997653 3
Q ss_pred hCcce
Q 006859 512 IYPNV 516 (628)
Q Consensus 512 ~~~~v 516 (628)
.++++
T Consensus 350 ~~d~~ 354 (365)
T 3qf7_A 350 AFDRK 354 (365)
T ss_dssp TCSCE
T ss_pred hCCEE
Confidence 34555
No 74
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.1e-13 Score=148.41 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=78.9
Q ss_pred cCCceEEEEecCCCChhHHHHHHHHHHHHH---h-----------cCCcccCCCCCc------hHHHH------------
Q 006859 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILA---Q-----------IGCYVPAHFSTI------RVVDR------------ 427 (628)
Q Consensus 380 ~~g~~~~i~GpNGsGKSTllk~i~g~~~~~---~-----------~g~~v~~~~~~i------~~~~~------------ 427 (628)
++|++++|+||||||||||+|+|+|+.... + +| ++|+....+ ...+.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~-~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~ 214 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIF-TVPGCISATPISDILDAQLPTWGQSLTSGATL 214 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSS-SCSSCCEEEECCSCCCTTCTTCSCBCBSSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCee-eeccchhhcccccccchhhhhcccccccCcch
Confidence 389999999999999999999999965321 1 23 455443110 11111
Q ss_pred ------HHhhcCCccccccCcCchHHHHHHHHHHHHh--C-CCCcE----EEEeC-CCCCCChHHHHHHHHHHHHHHHhC
Q 006859 428 ------IFTRMGTVDNLESNSSTFMTEMKETAFVMQN--V-SERSL----IVMDE-LGRATSSSDGFAIAWSCCEHLLSL 493 (628)
Q Consensus 428 ------~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~--~-~~~~l----~llDE-~~~gt~~~~~~~~~~~~~~~l~~~ 493 (628)
++..+|+.+... ...+|+|++|+..++++ + .+|++ +|+|| |+.+.|+. ...+.+.+.+.
T Consensus 215 ~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-----~~~l~~l~~~~ 287 (460)
T 2npi_A 215 LHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-----LAELHHIIEKL 287 (460)
T ss_dssp SCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-----CHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-----HHHHHHHHHHh
Confidence 111223322222 56799999988777766 5 78999 99999 98888875 22233444456
Q ss_pred CcEEEEEcCChh
Q 006859 494 KAYTIFASHMEN 505 (628)
Q Consensus 494 ~~~vi~~tH~~~ 505 (628)
+.+++++||+++
T Consensus 288 ~~tviiVth~~~ 299 (460)
T 2npi_A 288 NVNIMLVLCSET 299 (460)
T ss_dssp TCCEEEEECCSS
T ss_pred CCCEEEEEccCc
Confidence 889999999977
No 75
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.24 E-value=5.4e-13 Score=140.54 Aligned_cols=141 Identities=15% Similarity=0.027 Sum_probs=87.1
Q ss_pred cCcccccccceeecccccccCCc--------------------eEEEEecCCCChhHHHHHHHHHHHH------------
Q 006859 361 HPILESIHNDFIPNNIFISEAAN--------------------MVIVTGPNMSGKSTYLQQVCLIVIL------------ 408 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~--------------------~~~i~GpNGsGKSTllk~i~g~~~~------------ 408 (628)
+++++++++.+. +|+ +++|+||||||||||+|+|+|+.-.
T Consensus 36 ~~~l~~is~~i~--------~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~ 107 (413)
T 1tq4_A 36 QEILNLIELRMR--------AGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV 107 (413)
T ss_dssp HHHHHHHHHHHH--------HTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---
T ss_pred HHHhhhccceec--------CCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec
Confidence 346777777777 788 9999999999999999999993200
Q ss_pred HhcCCcccCCCC--Cc------------hHHHHHHhhcCCccccccCcCchHHH--HHHHHHHHHhC-C----------C
Q 006859 409 AQIGCYVPAHFS--TI------------RVVDRIFTRMGTVDNLESNSSTFMTE--MKETAFVMQNV-S----------E 461 (628)
Q Consensus 409 ~~~g~~v~~~~~--~i------------~~~~~~~~~~~~~~~~~~~~s~~s~~--~~~~~~i~~~~-~----------~ 461 (628)
.+.| ++++... .+ ...+..+..+++.+..... . +|+| +++...+++.+ . +
T Consensus 108 t~~~-~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 108 TMER-HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp -CCC-EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ceeE-EeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 0112 2222110 00 1235566666655432211 1 5666 67665555544 3 7
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHH----HhC----CcEEEEEcCChh---HHHHhhh
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHL----LSL----KAYTIFASHMEN---LSELATI 512 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l----~~~----~~~vi~~tH~~~---l~~~~~~ 512 (628)
|+++++|||++|+|+.....+...+.+.. .+. ..++++++|..+ +.++++.
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~ 246 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDK 246 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHH
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHH
Confidence 89999999999999877666544443332 232 357888999754 5554443
No 76
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.22 E-value=5.7e-11 Score=117.40 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHH-HHhcCC-cccCCCCCchHHHHHHhhcCCc-------------ccccc-----
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVI-LAQIGC-YVPAHFSTIRVVDRIFTRMGTV-------------DNLES----- 440 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~-~~~~g~-~v~~~~~~i~~~~~~~~~~~~~-------------~~~~~----- 440 (628)
+|++++|+||||||||||+++|++... ...-|. ++.... ...........++.. +....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE-RARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS-CHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC-CHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc
Confidence 899999999999999999999995433 222121 221111 111111112222211 00000
Q ss_pred ------Cc--CchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCC----hHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 441 ------NS--STFMTEMKETAFVMQNVSERSLIVMDELGRATS----SSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 441 ------~~--s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~----~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.. ..+..-..+....+ ....|+++++|||+.+.+ +.........++..+.+.|++++++||+.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 108 SEEKFVLEDRFNVDNFLRYIYRVV-KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp ----------CCHHHHHHHHHHHH-HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred cccceeccCcccHHHHHHHHHHHH-HhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 00 00111111111111 126899999999965543 12223334456666777799999999995543
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.22 E-value=1.5e-12 Score=134.14 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=82.8
Q ss_pred CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccC
Q 006859 362 PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESN 441 (628)
Q Consensus 362 ~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~ 441 (628)
++++++++.+. +|+.++|+||||||||||+++|+| ++|+..+.+.+.+.. .+.... ....
T Consensus 159 ~~l~~l~~~i~--------~g~~v~i~G~~GsGKTTll~~l~g---------~~~~~~g~i~i~~~~--e~~~~~-~~~~ 218 (330)
T 2pt7_A 159 QAISAIKDGIA--------IGKNVIVCGGTGSGKTTYIKSIME---------FIPKEERIISIEDTE--EIVFKH-HKNY 218 (330)
T ss_dssp HHHHHHHHHHH--------HTCCEEEEESTTSCHHHHHHHGGG---------GSCTTSCEEEEESSC--CCCCSS-CSSE
T ss_pred HHHhhhhhhcc--------CCCEEEEECCCCCCHHHHHHHHhC---------CCcCCCcEEEECCee--cccccc-chhE
Confidence 46666666666 899999999999999999999999 999888877654321 111110 1111
Q ss_pred cCchH-HHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhhC
Q 006859 442 SSTFM-TEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATIY 513 (628)
Q Consensus 442 ~s~~s-~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~~ 513 (628)
.+.+. +++++...+.+++ .+|+++++|||+ +. + ....++.+...+.+++++||.....+.+++.
T Consensus 219 i~~~~ggg~~~r~~la~aL~~~p~ilildE~~---~~-e----~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri 284 (330)
T 2pt7_A 219 TQLFFGGNITSADCLKSCLRMRPDRIILGELR---SS-E----AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRL 284 (330)
T ss_dssp EEEECBTTBCHHHHHHHHTTSCCSEEEECCCC---ST-H----HHHHHHHHHTTCCCEEEEEECSSHHHHHHHH
T ss_pred EEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC---hH-H----HHHHHHHHhcCCCEEEEEEcccHHHHHhhhh
Confidence 11111 5667766666665 789999999994 42 1 2234454544345799999998766666554
No 78
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.20 E-value=1.1e-10 Score=119.99 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=52.5
Q ss_pred cCcCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 440 SNSSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 440 ~~~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
...+.+|+|++|+..+++.+ .+|++++||||++++|+.....+.. ++..+. .+.+++++||+.++.+.+++
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS-KHTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT-TTSEEEEECCCTTGGGGCSE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECCHHHHhhCce
Confidence 34578999999988887764 5689999999999999866555443 444443 47899999999665554443
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.17 E-value=3.7e-13 Score=129.55 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=24.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
+|++++|+||||||||||+|+|+|+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 89999999999999999999999953
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.14 E-value=1.9e-10 Score=116.98 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=34.1
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHH
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVI 407 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~ 407 (628)
.++|++++..+. +|++++|+||||+|||||+++|+|...
T Consensus 22 ~~~Ld~i~~~l~--------~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 22 CTGINDKTLGAR--------GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTHHHHHCSBC--------TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC--------CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356788777788 999999999999999999999999653
No 81
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.13 E-value=1.6e-11 Score=122.00 Aligned_cols=110 Identities=13% Similarity=0.168 Sum_probs=62.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCC-CCCchHHHHHHhhc-----CC-cc-ccccCcCchHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH-FSTIRVVDRIFTRM-----GT-VD-NLESNSSTFMTEMKET 452 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~-~~~i~~~~~~~~~~-----~~-~~-~~~~~~s~~s~~~~~~ 452 (628)
+|++++|+|||||||||++++|+|. +++. +|.+...+..+..+ +. .+ ........|.. -+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~---------~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~---~l 91 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY---------INQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFAD---AL 91 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH---------HHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---HH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh---------CCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHH---HH
Confidence 8999999999999999999999993 3332 33222111000000 00 00 00001123421 12
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 453 AFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 453 ~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
+.++ ..+|+++++||| +|+.. . ..+++. .+.|.+++++||+.+.....++
T Consensus 92 a~aL--~~~p~illlDEp---~D~~~---~-~~~l~~-~~~g~~vl~t~H~~~~~~~~dr 141 (261)
T 2eyu_A 92 RAAL--REDPDVIFVGEM---RDLET---V-ETALRA-AETGHLVFGTLHTNTAIDTIHR 141 (261)
T ss_dssp HHHH--HHCCSEEEESCC---CSHHH---H-HHHHHH-HHTTCEEEEEECCSSHHHHHHH
T ss_pred HHHH--hhCCCEEEeCCC---CCHHH---H-HHHHHH-HccCCEEEEEeCcchHHHHHHH
Confidence 2222 258999999999 45432 2 223333 3568999999999876554443
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.09 E-value=3e-10 Score=117.68 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=51.1
Q ss_pred ccCcCchHHHHHHHH------HHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhh
Q 006859 439 ESNSSTFMTEMKETA------FVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELAT 511 (628)
Q Consensus 439 ~~~~s~~s~~~~~~~------~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~ 511 (628)
...++.+|+|+++.. .+++.+ ..|+++++|||+.|+|+.....+.. ++..+.+.+.+++++||+.++. .
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~vi~~sH~~~~~---~ 318 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQVILVSHDEELK---D 318 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSEEEEEESCGGGG---G
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEEChHHHH---H
Confidence 345678999999843 333333 6799999999999999866555433 4444455678999999996654 3
Q ss_pred hCcce
Q 006859 512 IYPNV 516 (628)
Q Consensus 512 ~~~~v 516 (628)
.++++
T Consensus 319 ~~d~~ 323 (339)
T 3qkt_A 319 AADHV 323 (339)
T ss_dssp GCSEE
T ss_pred hCCEE
Confidence 44544
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.08 E-value=8.1e-10 Score=107.65 Aligned_cols=134 Identities=11% Similarity=0.028 Sum_probs=71.0
Q ss_pred cCccccccc-ceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCC-cccCCCCCchHHHHHHhhcCCccc-
Q 006859 361 HPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC-YVPAHFSTIRVVDRIFTRMGTVDN- 437 (628)
Q Consensus 361 ~~~l~~~~~-~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~-~v~~~~~~i~~~~~~~~~~~~~~~- 437 (628)
.+.|+.+.. .+. +|++++|+||||||||||++++++......-.+ |+..+. ........+..++....
T Consensus 9 ~~~Ld~~~~ggi~--------~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (235)
T 2w0m_A 9 ILDFDKLIQGGIP--------QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE-SRDSIIRQAKQFNWDFEE 79 (235)
T ss_dssp CHHHHGGGTTSEE--------TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS-CHHHHHHHHHHTTCCCGG
T ss_pred chHHHHHhcCCCc--------CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc-CHHHHHHHHHHhcchHHH
Confidence 345555543 566 899999999999999999999998554322111 222221 11111122223332100
Q ss_pred c--------ccC---------cCchHHHHH-H-HHHHHHhCCCCc--EEEEeCCCCCC--ChHHHHHHHHHHHHHHHhCC
Q 006859 438 L--------ESN---------SSTFMTEMK-E-TAFVMQNVSERS--LIVMDELGRAT--SSSDGFAIAWSCCEHLLSLK 494 (628)
Q Consensus 438 ~--------~~~---------~s~~s~~~~-~-~~~i~~~~~~~~--l~llDE~~~gt--~~~~~~~~~~~~~~~l~~~~ 494 (628)
. +.. ....+.+.. + +...+. ..+|+ ++++|||+.+. ++.....+...+.+...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~ 158 (235)
T 2w0m_A 80 YIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQ-KLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN 158 (235)
T ss_dssp GBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHH-HHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred HhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHH-hhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 0 000 011122222 1 222221 24688 99999998655 65444444444444334679
Q ss_pred cEEEEEcCCh
Q 006859 495 AYTIFASHME 504 (628)
Q Consensus 495 ~~vi~~tH~~ 504 (628)
+++++++|+.
T Consensus 159 ~~vi~~~h~~ 168 (235)
T 2w0m_A 159 FTIYATSQYA 168 (235)
T ss_dssp EEEEEEEC--
T ss_pred CeEEEEeccC
Confidence 9999999996
No 84
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.05 E-value=1.5e-12 Score=149.40 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=64.8
Q ss_pred HHHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 427 RIFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SER--SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 427 ~~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~~--~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
..+..+|+.. .+.+..+++|+|++|+..+++++ ..| .++|||||+.|+++.+...+.. ++..+.+.|.|++++||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~-~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHH-HHHHTTTTTCEEEEECC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHH-HHHHHHhcCCEEEEEeC
Confidence 4566788864 46788999999999999998877 444 4999999999999988776544 55667777999999999
Q ss_pred ChhHHH
Q 006859 503 MENLSE 508 (628)
Q Consensus 503 ~~~l~~ 508 (628)
+.++..
T Consensus 525 d~~~~~ 530 (916)
T 3pih_A 525 DEEVIR 530 (916)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 976544
No 85
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.01 E-value=8.9e-10 Score=107.23 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=24.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
+|++++|+||||||||||+++|+|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999943
No 86
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.01 E-value=1.4e-10 Score=117.76 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHH------------------------H---HhcCCcccCCCC-Cch---HHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVI------------------------L---AQIGCYVPAHFS-TIR---VVDRIF 429 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------~---~~~g~~v~~~~~-~i~---~~~~~~ 429 (628)
+|++++|+|||||||||+++.|+|..- . ..++ ++++..+ ..+ ..+.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~-~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCC--CCCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCce-EEEecCCccCHHHHHHHHHH
Confidence 899999999999999999999999641 1 1244 5665544 322 122221
Q ss_pred h------------hcCCccccccCcCchHHHHHHHHHHHHhC-CCCc--EEEEeCCCCCCChHHHHHHHHHHHHHHH-hC
Q 006859 430 T------------RMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS--LIVMDELGRATSSSDGFAIAWSCCEHLL-SL 493 (628)
Q Consensus 430 ~------------~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~--l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~ 493 (628)
. ..|..+.....+..+| +++..+++.+ ..|+ ++++| |+.|.|+... ...+. +.
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-------~~~~~~~~ 246 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------AREFNEVV 246 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-------HHHHHHHT
T ss_pred HHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-------HHHHHHhc
Confidence 0 1122122222222333 3455555444 6799 99999 9777765422 12333 46
Q ss_pred CcEEEEEcCC
Q 006859 494 KAYTIFASHM 503 (628)
Q Consensus 494 ~~~vi~~tH~ 503 (628)
+.+++++||.
T Consensus 247 g~t~iiiThl 256 (302)
T 3b9q_A 247 GITGLILTKL 256 (302)
T ss_dssp CCCEEEEECC
T ss_pred CCCEEEEeCC
Confidence 8999999995
No 87
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.00 E-value=7.4e-10 Score=111.51 Aligned_cols=124 Identities=16% Similarity=0.125 Sum_probs=72.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHH----------hc-CCcccCCCCCchHHHH---------------HHhhcCC
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILA----------QI-GCYVPAHFSTIRVVDR---------------IFTRMGT 434 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~----------~~-g~~v~~~~~~i~~~~~---------------~~~~~~~ 434 (628)
+|++++|+||||||||||++++++..... +- ..|+..+...-.+... ++..+++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~l 108 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLI 108 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceEE
Confidence 89999999999999999999999843211 00 0133333221111111 1223333
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCC--CCChHHH---HHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 435 VDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGR--ATSSSDG---FAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 435 ~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~--gt~~~~~---~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
.+........++.++.+... ..+..++++++|||+. +.+.... ..+...+.....+.++++++++|+...
T Consensus 109 ~~~~~~~~~~ls~g~~~~i~--~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 109 QPLIGSLPNIMAPEWFDGLK--RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp CCCTTSCCCTTSHHHHHHHH--HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred eecCCCCcccCCHHHHHHHH--HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 33334456667777655433 3335799999999988 6654322 222333333334569999999999654
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.99 E-value=1.4e-10 Score=119.97 Aligned_cols=52 Identities=13% Similarity=0.007 Sum_probs=43.1
Q ss_pred ccccCCCCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH
Q 006859 346 PHFTENGPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 346 p~~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
|.+.+...++..|+ +..+++++ +++. +|++++|+||||||||||+++|+|+.
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~--------~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCG--------IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEE--------TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCeeecccceecCCCCEEEEee-eeec--------CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34445556777776 67788888 8888 99999999999999999999999953
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.98 E-value=1.2e-10 Score=109.23 Aligned_cols=106 Identities=12% Similarity=0.082 Sum_probs=61.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCC
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVS 460 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~ 460 (628)
.|+.++|+||||+|||||++++++... ..-|..+ ..+. ....+..+.. . +..+. ...++..+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~----~~~~-~~~~~~~~~~--~-------~~~~~--~~~~~~~~~ 99 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRG----YFFD-TKDLIFRLKH--L-------MDEGK--DTKFLKTVL 99 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCC----CEEE-HHHHHHHHHH--H-------HHHTC--CSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeE----EEEE-HHHHHHHHHH--H-------hcCch--HHHHHHHhc
Confidence 689999999999999999999999432 1112100 0011 1111111100 0 00000 001222334
Q ss_pred CCcEEEEeCCCC-CCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 461 ERSLIVMDELGR-ATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 461 ~~~l~llDE~~~-gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
.++++++|||+. +.++.... ....+++...+.+.+++++||..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~-~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRE-LISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHH-HHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCEEEEeCCCCCcCCHHHHH-HHHHHHHHHHHcCCCEEEEcCCC
Confidence 789999999985 66654333 34456666666789999999984
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.96 E-value=1.2e-09 Score=120.11 Aligned_cols=120 Identities=8% Similarity=-0.005 Sum_probs=79.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCC---c-ccCCCCCchHHHHH---------HhhcCCccccccCcCchHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC---Y-VPAHFSTIRVVDRI---------FTRMGTVDNLESNSSTFMT 447 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~---~-v~~~~~~i~~~~~~---------~~~~~~~~~~~~~~s~~s~ 447 (628)
+|++++|+||||+|||||+++++|.... -|. + .+.+. .-.+.... +...|........+..+|+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~ee~-~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACA--NKERAILFAYEES-RAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESSSC-HHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEeCC-HHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 8999999999999999999999995432 131 2 23222 11111111 1122333344455667899
Q ss_pred HHHHHHHHHHhC-CCCcEEEEeCCCCCCChH----HHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 448 EMKETAFVMQNV-SERSLIVMDELGRATSSS----DGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 448 ~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~----~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
|+++...+.+.. .+|+++++| |+.|.+.. ........++..+.+.|.++++++|+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 988777666554 789999999 97776654 022224456677777899999999996
No 91
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.95 E-value=9.4e-09 Score=117.08 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=64.8
Q ss_pred HhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 429 FTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SER--SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 429 ~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~~--~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
+..+|+.. .+.+..+++|+|++|+..++..+ ..+ .++|||||+.|+++.+...+ ..+++.|.+.|.++++++|++
T Consensus 363 L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L-~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 363 LLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEAL-LSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHTTTCEEEEECCCH
T ss_pred HHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHH-HHHHHHHHHcCCEEEEEcCCH
Confidence 33456654 36788899999999999998887 445 59999999999999887764 446677888899999999996
Q ss_pred hHHHHhhhCcce
Q 006859 505 NLSELATIYPNV 516 (628)
Q Consensus 505 ~l~~~~~~~~~v 516 (628)
++.. .+++|
T Consensus 442 ~~l~---~aD~i 450 (842)
T 2vf7_A 442 DVIR---RADWL 450 (842)
T ss_dssp HHHT---TCSEE
T ss_pred HHHH---hCCEE
Confidence 6433 35555
No 92
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.95 E-value=7.3e-10 Score=114.83 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=71.6
Q ss_pred EEEEc--CccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCC-CCCchHHHHH--
Q 006859 354 LAIDG--GRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH-FSTIRVVDRI-- 428 (628)
Q Consensus 354 l~~~~--~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~-~~~i~~~~~~-- 428 (628)
+.+++ ...+.++++.+.-...++. ..+|++++|+|||||||||+|++++| ++++. .+.+-.....
T Consensus 94 ~~iR~~~~~~~~l~~lg~~~~l~~l~-~~~~g~i~I~GptGSGKTTlL~~l~g---------~~~~~~~~~i~t~ed~~e 163 (356)
T 3jvv_A 94 AVFRTIPSKVLTMEELGMGEVFKRVS-DVPRGLVLVTGPTGSGKSTTLAAMLD---------YLNNTKYHHILTIEDPIE 163 (356)
T ss_dssp EEEEEECCSCCCTTTTTCCHHHHHHH-HCSSEEEEEECSTTSCHHHHHHHHHH---------HHHHHCCCEEEEEESSCC
T ss_pred EEEEECCCCCCCHHHcCChHHHHHHH-hCCCCEEEEECCCCCCHHHHHHHHHh---------cccCCCCcEEEEccCcHH
Confidence 44444 3345566654422222221 13677999999999999999999999 33332 1111000000
Q ss_pred --Hhh-cC-Ccc-ccccCcCchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 429 --FTR-MG-TVD-NLESNSSTFMTEMKETAFVMQN-VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 429 --~~~-~~-~~~-~~~~~~s~~s~~~~~~~~i~~~-~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
+.. .+ ..+ ......-+|.. .+.+. ..+|+++++||| ++... ...+++ +.+.|.++++++|
T Consensus 164 ~~~~~~~~~v~q~~~~~~~~~~~~------~La~aL~~~PdvillDEp---~d~e~----~~~~~~-~~~~G~~vl~t~H 229 (356)
T 3jvv_A 164 FVHESKKCLVNQREVHRDTLGFSE------ALRSALREDPDIILVGEM---RDLET----IRLALT-AAETGHLVFGTLH 229 (356)
T ss_dssp SCCCCSSSEEEEEEBTTTBSCHHH------HHHHHTTSCCSEEEESCC---CSHHH----HHHHHH-HHHTTCEEEEEES
T ss_pred hhhhccccceeeeeeccccCCHHH------HHHHHhhhCcCEEecCCC---CCHHH----HHHHHH-HHhcCCEEEEEEc
Confidence 000 00 000 00011112322 33333 388999999999 55322 222222 3456999999999
Q ss_pred ChhHHHHhhh
Q 006859 503 MENLSELATI 512 (628)
Q Consensus 503 ~~~l~~~~~~ 512 (628)
+.+.....++
T Consensus 230 ~~~~~~~~dR 239 (356)
T 3jvv_A 230 TTSAAKTIDR 239 (356)
T ss_dssp CSSHHHHHHH
T ss_pred cChHHHHHHH
Confidence 9876655544
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.94 E-value=4.3e-10 Score=116.27 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=67.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHH------------------------H---HhcCCcccCCCC-Cch---HHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVI------------------------L---AQIGCYVPAHFS-TIR---VVDRIF 429 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~------------------------~---~~~g~~v~~~~~-~i~---~~~~~~ 429 (628)
+|++++|+|||||||||+++.|+|..- . ..++ ++++..+ ..+ ..+.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~-~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCE-IVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCE-EECCSSSSCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeE-EEEecccccChhhhHHHHHH
Confidence 799999999999999999999999640 0 1244 5665544 322 112221
Q ss_pred h------------hcCCccccccCcCchHHHHHHHHHHHHhC-CCCc--EEEEeCCCCCCChHHHHHHHHHHHHHHH-hC
Q 006859 430 T------------RMGTVDNLESNSSTFMTEMKETAFVMQNV-SERS--LIVMDELGRATSSSDGFAIAWSCCEHLL-SL 493 (628)
Q Consensus 430 ~------------~~~~~~~~~~~~s~~s~~~~~~~~i~~~~-~~~~--l~llDE~~~gt~~~~~~~~~~~~~~~l~-~~ 493 (628)
. ..|..+......+.+| +++..+.+.+ ..|+ ++++| |+.|.|+... ...+. +.
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~-------~~~~~~~~ 303 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------AREFNEVV 303 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH-------HHHHHHHT
T ss_pred HHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH-------HHHHHHhc
Confidence 1 1122222222223344 3455555554 7799 99999 9777765422 12333 45
Q ss_pred CcEEEEEcCC
Q 006859 494 KAYTIFASHM 503 (628)
Q Consensus 494 ~~~vi~~tH~ 503 (628)
+.+++++||.
T Consensus 304 g~t~iiiThl 313 (359)
T 2og2_A 304 GITGLILTKL 313 (359)
T ss_dssp CCCEEEEESC
T ss_pred CCeEEEEecC
Confidence 8999999995
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.92 E-value=2.5e-09 Score=117.47 Aligned_cols=142 Identities=11% Similarity=0.047 Sum_probs=79.6
Q ss_pred EEEEcCccCccccccc-ceeecccccccCCceEEEEecCCCChhHHHHH--HHHHHHHHhcCC-cccCCCCCchHHHHHH
Q 006859 354 LAIDGGRHPILESIHN-DFIPNNIFISEAANMVIVTGPNMSGKSTYLQQ--VCLIVILAQIGC-YVPAHFSTIRVVDRIF 429 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~-~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~--i~g~~~~~~~g~-~v~~~~~~i~~~~~~~ 429 (628)
+....++.++|+++++ .+. +|++++|+||||||||||+++ ++|+.-. .-|. ++...... .......
T Consensus 18 ~~~~~~g~~~Ld~i~~G~i~--------~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~~~-~~~~~~~ 87 (525)
T 1tf7_A 18 IAKMRTMIEGFDDISHGGLP--------IGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEETP-QDIIKNA 87 (525)
T ss_dssp CCEECCCCTTHHHHTTSSEE--------TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCH-HHHHHHH
T ss_pred cccccCCchhHHHhcCCCCC--------CCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeCCH-HHHHHHH
Confidence 5555667889999998 899 999999999999999999999 5674311 1121 22111100 0000111
Q ss_pred hhcCCc----------------c--ccccCcCchHHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCh--HHH--HHHHHH
Q 006859 430 TRMGTV----------------D--NLESNSSTFMTEMKETAFVMQNV--SERSLIVMDELGRATSS--SDG--FAIAWS 485 (628)
Q Consensus 430 ~~~~~~----------------~--~~~~~~s~~s~~~~~~~~i~~~~--~~~~l~llDE~~~gt~~--~~~--~~~~~~ 485 (628)
..+|.. + ....-...+..+. ....+...+ ..+.++++|||+..... .|. ......
T Consensus 88 ~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ 166 (525)
T 1tf7_A 88 RSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR 166 (525)
T ss_dssp GGGTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH
T ss_pred HHcCCChHHhhccCcEEEEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHH
Confidence 111110 0 0000112222221 122222222 57899999999764321 122 222445
Q ss_pred HHHHHHhCCcEEEEEcCChhH
Q 006859 486 CCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 486 ~~~~l~~~~~~vi~~tH~~~l 506 (628)
++..+.+.|+|++++||+.+.
T Consensus 167 ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 167 LVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp HHHHHHHHTCEEEEEEECSSS
T ss_pred HHHHHHHCCCEEEEEecCCCC
Confidence 666677779999999999653
No 95
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.91 E-value=7e-11 Score=118.03 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=27.2
Q ss_pred CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 462 RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 462 ~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
..++++|||+.|+++.| ..+++.+.+. .+++++.|..
T Consensus 114 ~~lllldep~~gL~~lD-----~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 114 CCLYFISPTGHSLRPLD-----LEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp EEEEEECCCSSSCCHHH-----HHHHHHHHTT-SEEEEEETTG
T ss_pred eeeEEEecCCCcCCHHH-----HHHHHHHHhc-CcEEEEEecc
Confidence 35899999999999877 2345556655 7777777764
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.89 E-value=2e-10 Score=113.39 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=25.5
Q ss_pred cCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH
Q 006859 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.|++++|+++++++. +|.+++|+|||||||||++++|+|..
T Consensus 9 ~~~~~~l~~isl~i~--------~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 9 SGVDLGTENLYFQSM--------RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------C--------CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceeecceeccCC--------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456778888888888 99999999999999999999999953
No 97
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.89 E-value=5.5e-11 Score=115.17 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=24.8
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
|.-|+++++++. +|++++|+||||||||||+++|+|+.
T Consensus 10 ~~~l~~isl~i~--------~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMN--------NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecC--------CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456778888888 99999999999999999999999954
No 98
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.85 E-value=1.8e-10 Score=108.64 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.6
Q ss_pred CceEEEEecCCCChhHHHHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCLIVI 407 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g~~~ 407 (628)
|++++|+||||||||||++.|+|..-
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 67899999999999999999999543
No 99
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.83 E-value=1.3e-08 Score=98.09 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=66.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCC-CCchHHHHHHhhcCCcc-----cc-ccCcCchHHHHHH-H
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHF-STIRVVDRIFTRMGTVD-----NL-ESNSSTFMTEMKE-T 452 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~-~~i~~~~~~~~~~~~~~-----~~-~~~~s~~s~~~~~-~ 452 (628)
+|++++|+||||+|||||++++++ -...-..|+..+. .....+......++... .+ ....+... .+.+ +
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 95 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFK-EQRRVI 95 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTS-HHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHH-HHHHHH
Confidence 899999999999999999999999 1111112443332 12222333344444310 00 00111111 1222 3
Q ss_pred HHHHHhCC-CCcEEEEeCCCCCCChHHH--------HHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 453 AFVMQNVS-ERSLIVMDELGRATSSSDG--------FAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 453 ~~i~~~~~-~~~l~llDE~~~gt~~~~~--------~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
..+...+. .++++++|||+.+.++... ..+...+.+...+.++++++++|...
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 33333444 4999999999888765321 11122223333345899999999853
No 100
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.82 E-value=1.5e-09 Score=115.75 Aligned_cols=145 Identities=9% Similarity=-0.019 Sum_probs=86.5
Q ss_pred cccCCCCEEEEcC-ccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH----------------H--
Q 006859 347 HFTENGPLAIDGG-RHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV----------------I-- 407 (628)
Q Consensus 347 ~~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~----------------~-- 407 (628)
.+.+...++..|+ +.++++++ +++. +|++++|+||||||||||+++|+|+. +
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~--------~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVG--------RGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD 200 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCB--------TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHH
T ss_pred CceEEeccceecCCCceEEeee-EEec--------CCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHH
Confidence 3444455777776 67788888 8888 99999999999999999999999953 0
Q ss_pred ----------H-HhcCCcccCCCCCch----HHH------HHHhhcCCc-cccccCcCchHHHHHHHHHHHHhCCCCcEE
Q 006859 408 ----------L-AQIGCYVPAHFSTIR----VVD------RIFTRMGTV-DNLESNSSTFMTEMKETAFVMQNVSERSLI 465 (628)
Q Consensus 408 ----------~-~~~g~~v~~~~~~i~----~~~------~~~~~~~~~-~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~ 465 (628)
+ ..++ ++++...... ..+ ..+...+.. ..+....+.|++++++++.+ +.+|++
T Consensus 201 ~~~~~~~~~~l~r~i~-~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~- 275 (438)
T 2dpy_A 201 FIENILGPDGRARSVV-IAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA- 275 (438)
T ss_dssp HHHTTTHHHHHHTEEE-EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC-
T ss_pred HHHhhccccccCceEE-EEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc-
Confidence 0 1133 5554322111 111 111111100 11122356788888555444 555554
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHh---C-Cc-----EEEEEcCChhHHHHhhh
Q 006859 466 VMDELGRATSSSDGFAIAWSCCEHLLS---L-KA-----YTIFASHMENLSELATI 512 (628)
Q Consensus 466 llDE~~~gt~~~~~~~~~~~~~~~l~~---~-~~-----~vi~~tH~~~l~~~~~~ 512 (628)
++|.++.....+ ..+++.+.+ . |. +++++||+.+ ..+++.
T Consensus 276 -----t~glD~~~~~~l-~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~ 324 (438)
T 2dpy_A 276 -----TKGYPPSVFAKL-PALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADS 324 (438)
T ss_dssp -----SSSCCTTHHHHH-HHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHH
T ss_pred -----cccCCHHHHHHH-HHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhce
Confidence 778887554443 334444433 2 53 8999999976 444444
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=7.4e-09 Score=93.64 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=55.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCC-CchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS-TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
+|+.++|+||||+|||||++.+++ ..++. | .... +...+.... ..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~---------~~~~~-g~~~~~-------~~~~~~~~~----------------~~~ 81 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA---------QALEA-GKNAAY-------IDAASMPLT----------------DAA 81 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH---------HHHTT-TCCEEE-------EETTTSCCC----------------GGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH---------HHHhc-CCcEEE-------EcHHHhhHH----------------HHH
Confidence 588999999999999999999999 33321 1 0000 000000000 113
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcE-EEEEcCC
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAY-TIFASHM 503 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~-vi~~tH~ 503 (628)
..++++++|||+..... . ......+++.+.+.+.+ ++++||.
T Consensus 82 ~~~~lLilDE~~~~~~~-~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNE-E-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTCCCSH-H-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred hCCCEEEEeCccccChH-H-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 46899999999874332 3 33344566666666776 8888885
No 102
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.79 E-value=3.2e-10 Score=114.47 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=70.1
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCC---------Cc
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFS---------TI 422 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~---------~i 422 (628)
..+++.|+ .++|+++++++. +|++++|+||||||||||+++|+|+. -..+-.++|+... .+
T Consensus 105 ~~vs~~y~-~~vL~~vsl~i~--------~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni 174 (305)
T 2v9p_A 105 QNIELITF-INALKLWLKGIP--------KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRA 174 (305)
T ss_dssp TTCCHHHH-HHHHHHHHHTCT--------TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSC
T ss_pred EEEEEEcC-hhhhccceEEec--------CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhh
Confidence 34777776 678888888888 99999999999999999999999976 2222224444321 01
Q ss_pred h-------HHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHH
Q 006859 423 R-------VVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSD 478 (628)
Q Consensus 423 ~-------~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~ 478 (628)
. .....+..+ +.+.++ ...+|+|++|+ +...+.+|+++| ++++|+..
T Consensus 175 ~~~~~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 175 ALVDDATHACWRYFDTY-LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp EEEEEECHHHHHHHHHT-TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTT
T ss_pred ccCccccHHHHHHHHHH-hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHH
Confidence 0 112233331 222222 45789999988 222337889888 77777643
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.78 E-value=1.4e-08 Score=105.36 Aligned_cols=136 Identities=11% Similarity=0.068 Sum_probs=72.8
Q ss_pred Cccccc-ccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH-Hhc----C--CcccCCCC-CchHHHHHHhhc
Q 006859 362 PILESI-HNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL-AQI----G--CYVPAHFS-TIRVVDRIFTRM 432 (628)
Q Consensus 362 ~~l~~~-~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~-~~~----g--~~v~~~~~-~i~~~~~~~~~~ 432 (628)
+.|+.+ +..+. .|++++|+||||||||||++++++.... ... | .|+..... ....+..++...
T Consensus 118 ~~LD~lL~ggi~--------~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~ 189 (349)
T 1pzn_A 118 KSLDKLLGGGIE--------TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 189 (349)
T ss_dssp HHHHHHHTSSEE--------SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT
T ss_pred HHHHHHhcCCCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 345543 56777 9999999999999999999999994311 111 1 12222211 012233344444
Q ss_pred CCcc-----ccccCcCchHHHHHHHHHHH----HhC----CCCcEEEEeCCCCCCChHH--------H----HHHHHHHH
Q 006859 433 GTVD-----NLESNSSTFMTEMKETAFVM----QNV----SERSLIVMDELGRATSSSD--------G----FAIAWSCC 487 (628)
Q Consensus 433 ~~~~-----~~~~~~s~~s~~~~~~~~i~----~~~----~~~~l~llDE~~~gt~~~~--------~----~~~~~~~~ 487 (628)
+... ++.-....-+.++.++...+ ..+ .+|+++++|||+.+.++.. . ..+...+.
T Consensus 190 ~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~ 269 (349)
T 1pzn_A 190 GLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLH 269 (349)
T ss_dssp TCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHH
Confidence 4321 11111111133444333222 222 5799999999977664421 0 11111222
Q ss_pred HHHHhCCcEEEEEcCChh
Q 006859 488 EHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 488 ~~l~~~~~~vi~~tH~~~ 505 (628)
....+.++++++++|...
T Consensus 270 ~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 270 RLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHTTCEEEEEEECC-
T ss_pred HHHHHcCcEEEEEccccc
Confidence 222346899999999853
No 104
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.76 E-value=3e-10 Score=115.81 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=60.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHH----HhcCCcccCCCCCc----------------------hHHHHHHhhcCC
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVIL----AQIGCYVPAHFSTI----------------------RVVDRIFTRMGT 434 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~----~~~g~~v~~~~~~i----------------------~~~~~~~~~~~~ 434 (628)
+|++++|+||||||||||+++|+|+.-- .++| +++.+.... ..+...+..++
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~-~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~- 166 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVD-LVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK- 166 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEE-EEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEE-EEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-
Confidence 7999999999999999999999996421 1233 444332111 12233344444
Q ss_pred ccccccCcCchHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 006859 435 VDNLESNSSTFMTEMKETAFVMQN-VSERSLIVMDELGRATS 475 (628)
Q Consensus 435 ~~~~~~~~s~~s~~~~~~~~i~~~-~~~~~l~llDE~~~gt~ 475 (628)
.+........||+|++++..++.. +.+|+++|+|||+...+
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 222234456788888776554433 37899999999987754
No 105
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.70 E-value=2.5e-09 Score=97.63 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=43.6
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchH
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRV 424 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~ 424 (628)
+++.|++..+++++++++. +|++++|+||||||||||+|+|+| .+ +.+|.+..
T Consensus 13 ~~~~~g~~~~l~~vsl~i~--------~Ge~v~L~G~nGaGKTTLlr~l~g---------~l-~~~G~V~~ 65 (158)
T 1htw_A 13 SMLRFGKKFAEILLKLHTE--------KAIMVYLNGDLGAGKTTLTRGMLQ---------GI-GHQGNVKS 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCS--------SCEEEEEECSTTSSHHHHHHHHHH---------HT-TCCSCCCC
T ss_pred HHHHHHHHHHHhccccccC--------CCCEEEEECCCCCCHHHHHHHHHH---------hC-CCCCeEEE
Confidence 4455677777888888888 999999999999999999999999 66 56676644
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.68 E-value=4.3e-08 Score=96.05 Aligned_cols=123 Identities=10% Similarity=0.082 Sum_probs=62.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHh------cCC-cccCCCC-CchHHHHHHhhcCCcc-----ccccCcCchH-
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQ------IGC-YVPAHFS-TIRVVDRIFTRMGTVD-----NLESNSSTFM- 446 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~------~g~-~v~~~~~-~i~~~~~~~~~~~~~~-----~~~~~~s~~s- 446 (628)
+|++++|+||||||||||++++++...+.. -|+ |+..+.. ..........+++... .+... ..++
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYA-RAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEE-ECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEE-ecCCH
Confidence 899999999999999999999999543311 111 2222211 1222333445555431 11110 0111
Q ss_pred HHHHH-HHHHHHhC--CCCcEEEEeCCCCCCChH-H-----H------HHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 447 TEMKE-TAFVMQNV--SERSLIVMDELGRATSSS-D-----G------FAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 447 ~~~~~-~~~i~~~~--~~~~l~llDE~~~gt~~~-~-----~------~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
.+..+ +..+...+ ..++++++|||+...++. . + ..+...+.+...+.++++++++|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 11111 11122222 579999999998776542 0 1 1122223333334699999999974
No 107
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.65 E-value=1.2e-08 Score=106.69 Aligned_cols=110 Identities=14% Similarity=0.200 Sum_probs=62.7
Q ss_pred cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCC-CCCchHHHHHHh-----hcC-Ccc-ccccCcCchHHHHHH
Q 006859 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAH-FSTIRVVDRIFT-----RMG-TVD-NLESNSSTFMTEMKE 451 (628)
Q Consensus 380 ~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~-~~~i~~~~~~~~-----~~~-~~~-~~~~~~s~~s~~~~~ 451 (628)
.+|++++|+|||||||||+++.|+| ++++. ++.+...+.... .++ ..+ .+......|+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~---------~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~---- 200 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID---------YINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFAD---- 200 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH---------HHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHH----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh---------hcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHH----
Confidence 3789999999999999999999999 33332 233211110000 000 000 00012234533
Q ss_pred HHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 452 TAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 452 ~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
.+..++ .+|+++++||| ++... ...+++. ...|.+++.++|..+..+..++
T Consensus 201 --~l~~~L~~~pd~illdE~---~d~e~----~~~~l~~-~~~g~~vi~t~H~~~~~~~~~r 252 (372)
T 2ewv_A 201 --ALRAALREDPDVIFVGEM---RDLET----VETALRA-AETGHLVFGTLHTNTAIDTIHR 252 (372)
T ss_dssp --HHHHHTTSCCSEEEESCC---CSHHH----HHHHHHH-HTTTCEEEECCCCCSHHHHHHH
T ss_pred --HHHHHhhhCcCEEEECCC---CCHHH----HHHHHHH-HhcCCEEEEEECcchHHHHHHH
Confidence 222232 68999999999 55422 2223333 3568899999998776554443
No 108
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.64 E-value=3.4e-08 Score=95.28 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=24.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|++++|+||||||||||+++|+|.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 8999999999999999999999994
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.63 E-value=8.1e-11 Score=113.29 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|++++|+|||||||||++++|+|+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999995
No 110
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.60 E-value=2e-08 Score=104.98 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=23.9
Q ss_pred C--CceEEEEecCCCChhHHHHHHHHH
Q 006859 381 A--ANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~--g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+ |+.++|+||||||||||+|+|+|+
T Consensus 167 ~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 167 PFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 7 999999999999999999999993
No 111
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.59 E-value=2.6e-07 Score=95.55 Aligned_cols=56 Identities=7% Similarity=0.032 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHHhC----------CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 444 TFMTEMKETAFVMQNV----------SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 444 ~~s~~~~~~~~i~~~~----------~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
.+|+|++|...++..+ ..|++++||||++++|+..... +.+.+.+.+.+++++||.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~----l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQY----LLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHH----HHHHHHHSSEEEEEESSC
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHH----HHHHHHhcCcEEEEEEec
Confidence 5788998876666554 5899999999999998755444 444444444789999995
No 112
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.53 E-value=1.8e-08 Score=104.92 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=70.5
Q ss_pred cccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCc
Q 006859 365 ESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSST 444 (628)
Q Consensus 365 ~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~ 444 (628)
+++++.+. +|+.++|+||||||||||+++|+| ++|+..+.+.+.+. ..+.... .....+.
T Consensus 166 ~~l~~~i~--------~G~~i~ivG~sGsGKSTll~~l~~---------~~~~~~g~I~ie~~--~e~~~~~-~~~~v~~ 225 (361)
T 2gza_A 166 SFLRRAVQ--------LERVIVVAGETGSGKTTLMKALMQ---------EIPFDQRLITIEDV--PELFLPD-HPNHVHL 225 (361)
T ss_dssp HHHHHHHH--------TTCCEEEEESSSSCHHHHHHHHHT---------TSCTTSCEEEEESS--SCCCCTT-CSSEEEE
T ss_pred HHHHHHHh--------cCCEEEEECCCCCCHHHHHHHHHh---------cCCCCceEEEECCc--cccCccc-cCCEEEE
Confidence 55555566 899999999999999999999999 99988887765431 1111110 0011111
Q ss_pred h---------HHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHhhh
Q 006859 445 F---------MTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELATI 512 (628)
Q Consensus 445 ~---------s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~~~ 512 (628)
+ +.+......+...+ ..|+.+++||+ ... . ....++.+..-..+++.++|........++
T Consensus 226 v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~---r~~-~----~~~~l~~l~~g~~~~l~t~H~~~~~~~~~R 295 (361)
T 2gza_A 226 FYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAEL---RGG-E----AYDFINVAASGHGGSITSCHAGSCELTFER 295 (361)
T ss_dssp ECC----------CCHHHHHHHHTTSCCSEEEESCC---CST-H----HHHHHHHHHTTCCSCEEEEECSSHHHHHHH
T ss_pred eecCccccccccccCHHHHHHHHHhcCCCEEEEcCc---hHH-H----HHHHHHHHhcCCCeEEEEECCCCHHHHHHH
Confidence 1 01222233333333 57899999999 322 1 222444444434567888898665544443
No 113
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.51 E-value=3.9e-08 Score=103.40 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=35.2
Q ss_pred EEEcCccCcccccccceeecccccccCCce--EEEEecCCCChhHHHHHHHHHH
Q 006859 355 AIDGGRHPILESIHNDFIPNNIFISEAANM--VIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~--~~i~GpNGsGKSTllk~i~g~~ 406 (628)
++.|++.+ ++++++.+. +|++ ++|+||||||||||+++|+|..
T Consensus 22 ~~~y~~~~-L~~vsl~i~--------~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVS--------QGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CC--C-HHHHHHSCC---------CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCee-cCCCceEec--------CCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 56677778 888888888 9999 9999999999999999999963
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.46 E-value=1.8e-07 Score=94.85 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
+|++++|+|||||||||+++.|+|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999999964
No 115
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.43 E-value=5.2e-08 Score=108.49 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=30.1
Q ss_pred CCcEEEEeCC------CCCCChHHHHHHHHHHHHHHHh-CCcEEEEEcCChh
Q 006859 461 ERSLIVMDEL------GRATSSSDGFAIAWSCCEHLLS-LKAYTIFASHMEN 505 (628)
Q Consensus 461 ~~~l~llDE~------~~gt~~~~~~~~~~~~~~~l~~-~~~~vi~~tH~~~ 505 (628)
.|+++++||| +.|.++.....+...+.+++.+ .+.+++++||+.+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 5889999999 7777775544444333343443 4678899999865
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.37 E-value=8.2e-08 Score=101.38 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=31.3
Q ss_pred CCEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHH
Q 006859 352 GPLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 352 ~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.++...|++++++++++++ ++|+||||+|||||+++++|
T Consensus 15 ~~l~~~y~~~~vl~~vsf~--------------I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 15 ANLPNQVYRKSVKRGFEFT--------------LMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp CCCCCCTTTTTCC-CCCEE--------------EEEECCTTSSHHHHHHHHTT
T ss_pred EecceeECCEEEecCCCEE--------------EEEECCCCCcHHHHHHHHhC
Confidence 3467778888888776533 48999999999999999999
No 117
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.37 E-value=3.1e-06 Score=82.77 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=64.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCC-cccCCCCCchHHHHHHhhcCCcc-------cc---c----------
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC-YVPAHFSTIRVVDRIFTRMGTVD-------NL---E---------- 439 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~-~v~~~~~~i~~~~~~~~~~~~~~-------~~---~---------- 439 (628)
+|++++|+||||+|||||+..++.......-++ |+..+.. .......+.++|..- .+ +
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSK 100 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccccc
Confidence 899999999999999999877766433221111 2222211 111111122223210 00 0
Q ss_pred -------cCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCC--ChHHHHHHHHHHHHHHHhCCcEEEEEcCChh
Q 006859 440 -------SNSSTFMTEMKETAFVMQNVSERSLIVMDELGRAT--SSSDGFAIAWSCCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 440 -------~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt--~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~ 505 (628)
........-..++..++.. ..++++++|+++... ++.........+.+.+.+.++++++++|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 101 EYEKYIVHDLTDIREFIEVLRQAIRD-INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp CCCSCBCSCCSSHHHHHHHHHHHHHH-HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred ccccccccCccCHHHHHHHHHHHHHH-hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 0001111112222222222 468899999997654 2222233344555656678999999999854
No 118
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.35 E-value=8e-07 Score=90.10 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=20.1
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHH
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
++...|++++++++++++ ++|+||||+|||||+++|.|.
T Consensus 3 ~l~~~~~~~~~l~~~~~~--------------I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEFT--------------LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ---------------CEE--------------EEEEEETTSSHHHHHHHHHC-
T ss_pred CCcceECCEEEEcCCCEE--------------EEEECCCCCCHHHHHHHHhCC
Confidence 367788888888875533 489999999999999999984
No 119
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.35 E-value=5.1e-07 Score=81.11 Aligned_cols=75 Identities=19% Similarity=0.110 Sum_probs=53.7
Q ss_pred cccCcCchHHHHHHHHHHH------Hh-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 438 LESNSSTFMTEMKETAFVM------QN-VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 438 ~~~~~s~~s~~~~~~~~i~------~~-~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
..+..+.+|+|++++..++ +. +.+|+++++|||+.|+|+.....+. .++..+.+.+.+++++||+.++ .
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~tiiivsH~~~~---~ 126 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQVILVSHDEEL---K 126 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSEEEEEESCGGG---G
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCEEEEEEChHHH---H
Confidence 4567788999999877654 33 3779999999999999886555433 3444455558899999999644 3
Q ss_pred hhCcce
Q 006859 511 TIYPNV 516 (628)
Q Consensus 511 ~~~~~v 516 (628)
..++.+
T Consensus 127 ~~~d~i 132 (148)
T 1f2t_B 127 DAADHV 132 (148)
T ss_dssp GGCSEE
T ss_pred HhCCEE
Confidence 444544
No 120
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.33 E-value=9.9e-07 Score=92.63 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=61.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHH-hcC-----C-cccCCC-CCchHHHHHHhhcCCcc-----ccccCcCchHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILA-QIG-----C-YVPAHF-STIRVVDRIFTRMGTVD-----NLESNSSTFMT 447 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~-~~g-----~-~v~~~~-~~i~~~~~~~~~~~~~~-----~~~~~~s~~s~ 447 (628)
+|++++|+||||||||||+++++...... ..| + |+..+. ........+..++|+.. ++.-.......
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 89999999999999999999876532221 011 1 221111 11112333455566531 11111001111
Q ss_pred HHHH-HHHHHHhC--CCCcEEEEeCCCCCCChHH--------HHHHHHHH---HHHH-HhCCcEEEEEcCCh
Q 006859 448 EMKE-TAFVMQNV--SERSLIVMDELGRATSSSD--------GFAIAWSC---CEHL-LSLKAYTIFASHME 504 (628)
Q Consensus 448 ~~~~-~~~i~~~~--~~~~l~llDE~~~gt~~~~--------~~~~~~~~---~~~l-~~~~~~vi~~tH~~ 504 (628)
...+ +..+...+ ..++++++|||+...++.. .......+ +..+ .+.++++++++|..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 1111 11222211 5789999999976544311 11111222 2233 34699999999983
No 121
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.33 E-value=4.9e-10 Score=115.57 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=66.5
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++.+|++++. ++|+|++.+|...+ +++.|.+.......|++++|||++.+..+|||+++|++|+
T Consensus 162 ~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~ 241 (366)
T 3tui_C 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 241 (366)
T ss_dssp TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 88999999998766 5554443322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+.+++..+.
T Consensus 242 iv~~g~~~e 250 (366)
T 3tui_C 242 LIEQDTVSE 250 (366)
T ss_dssp EEECCBHHH
T ss_pred EEEEcCHHH
Confidence 876655444
No 122
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.31 E-value=3.5e-07 Score=85.95 Aligned_cols=35 Identities=9% Similarity=-0.184 Sum_probs=24.6
Q ss_pred hhHHHHHH-HHHHHHHHHHHHhhhccCCCHHHHHHHHH
Q 006859 581 INCLQYKQ-IQMLYHAAQRLICLKYSNQDEESIRHALQ 617 (628)
Q Consensus 581 ~~~~~~h~-~~~~~~~~~~~~~l~~g~~~~~~~~~~l~ 617 (628)
+++.++|. ++.+.++|++|+ ++|++..++.++-|.
T Consensus 148 ~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 148 YFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp SEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred EEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 67778998 889999999998 899987776665543
No 123
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.29 E-value=3.1e-07 Score=98.22 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=44.8
Q ss_pred EEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHH
Q 006859 356 IDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRI 428 (628)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~ 428 (628)
+.....++++++++++. + ++++|+|||||||||||++|+| +.++.+|.+.+.+..
T Consensus 12 l~~~~~~~l~~vsl~i~--------~-e~~~liG~nGsGKSTLl~~l~G---------l~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 12 LTLINWNGFFARTFDFD--------E-LVTTLSGGNGAGKSTTMAGFVT---------ALIPDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEETTEEEEEEECC--------S-SEEEEECCTTSSHHHHHHHHHH---------HHCCCTTTCCCCCTT
T ss_pred EEEeccccccceEEEEc--------c-ceEEEECCCCCcHHHHHHHHhc---------CCCCCCCEEEECCEE
Confidence 34445677888887777 8 9999999999999999999999 888888887665443
No 124
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.29 E-value=1.2e-09 Score=113.37 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=72.1
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|.+.+|...+ +.+.+.+.......|++++|||++++..+|||+++|++|+
T Consensus 132 ~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~ 211 (381)
T 3rlf_A 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 211 (381)
T ss_dssp GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999999 88999999998755 4444444322223489999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHhc
Q 006859 607 QDEESIRHAL-QNLKESFID 625 (628)
Q Consensus 607 ~~~~~~~~~l-~~~~~~~~~ 625 (628)
+...+.++.+ ..+.+.|+.
T Consensus 212 i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 212 VAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp EEEEECHHHHHHCCSBHHHH
T ss_pred EEEEeCHHHHHhCCccHHHH
Confidence 9776655543 335555543
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.27 E-value=2.2e-07 Score=95.10 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
+|++++|+|||||||||+++.|+|..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999954
No 126
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.25 E-value=7.9e-06 Score=82.39 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcC---CcccCCCCCchHHHHH---HhhcCCccccccCcCchHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIG---CYVPAHFSTIRVVDRI---FTRMGTVDNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g---~~v~~~~~~i~~~~~~---~~~~~~~~~~~~~~s~~s~~~~~~~~ 454 (628)
+|++++|+||||+||||+++.|++.... .-| .++.++.......+.+ ....|+....... ... +..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~----~~~---l~~ 175 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYT----KEE---FQQ 175 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSS----HHH---HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCC----HHH---HHH
Confidence 6899999999999999999999995432 123 2455554333222222 2223332111111 111 222
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHh--C-CcEEEE-EcCCh-hHHHHhhhCc
Q 006859 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLS--L-KAYTIF-ASHME-NLSELATIYP 514 (628)
Q Consensus 455 i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~--~-~~~vi~-~tH~~-~l~~~~~~~~ 514 (628)
.+..+..++++|+|.+ |.++.+... ...+...+.. . +..+++ +||.. ++.+..+.+.
T Consensus 176 al~~~~~~dlvIiDT~--G~~~~~~~~-~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 176 AKELFSEYDHVFVDTA--GRNFKDPQY-IDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp HHHHGGGSSEEEEECC--CCCTTSHHH-HHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS
T ss_pred HHHHhcCCCEEEEeCC--CCChhhHHH-HHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh
Confidence 2333477899999955 555543322 2223332221 1 223333 48873 4455555443
No 127
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.20 E-value=3.2e-09 Score=109.42 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=67.7
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|.+.+|...+ +.+.+.+.......|++++|||++++..+|||+++|++|+
T Consensus 137 ~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~ 216 (359)
T 3fvq_A 137 HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGR 216 (359)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCE
Confidence 8999999999999999988 88999999998765 4444544333333489999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 006859 607 QDEESIRHAL 616 (628)
Q Consensus 607 ~~~~~~~~~l 616 (628)
+...+.++.+
T Consensus 217 i~~~g~~~el 226 (359)
T 3fvq_A 217 ILQTASPHEL 226 (359)
T ss_dssp EEEEECHHHH
T ss_pred EEEEeCHHHH
Confidence 9776655543
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.13 E-value=1.3e-05 Score=85.49 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=24.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.|++++|+||||||||||++.|+|+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 89999999999999999999999953
No 129
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.12 E-value=1.2e-06 Score=83.61 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=32.0
Q ss_pred CEEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHH
Q 006859 353 PLAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 353 ~l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
++++.|+. +++.+ +.+. +|..++|+|+||+|||||++.++|..
T Consensus 8 ~~~~~~~~-~~l~~--~~~~--------~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 8 QTHFVMSA-PDIRH--LPSD--------TGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ---CEEEE-SSGGG--SSCS--------CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhheeec-CCHhH--CCCC--------CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46666763 56665 4555 88999999999999999999999843
No 130
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.11 E-value=5.7e-06 Score=94.61 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=67.6
Q ss_pred HHhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 428 IFTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SE--RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 428 ~~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~--~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
.+..+|+.. .+++..+++|+|++|+..++..+ .. +.++|||||+.|+++.+...+ ..+++.|.+.|.||++++|+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L-~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL-IATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHH-HHHHHHHHTTTCEEEEECCC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHH-HHHHHHHHhCCCEEEEEecC
Confidence 367788875 47889999999999988888776 33 589999999999999887764 44667778889999999999
Q ss_pred hhHHHHhhhCcce
Q 006859 504 ENLSELATIYPNV 516 (628)
Q Consensus 504 ~~l~~~~~~~~~v 516 (628)
.+... .+++|
T Consensus 566 l~~i~---~ADrI 575 (972)
T 2r6f_A 566 EDTML---AADYL 575 (972)
T ss_dssp HHHHH---SCSEE
T ss_pred HHHHH---hCCEE
Confidence 66443 35555
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.08 E-value=2.7e-07 Score=95.07 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=37.9
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHH
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.+.|+.+.+++++++++. .|++++|+||||||||||++.|+|
T Consensus 35 ~~~~~~~~~~l~~i~~~~~--------~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 35 ADHRAAVRDLIDAVLPQTG--------RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHHHHHHHHHGGGCC--------CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccChHHHHHhCCcccC--------CCeEEEEECCCCCCHHHHHHHHHH
Confidence 5556666778888888888 899999999999999999999999
No 132
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.08 E-value=1.4e-06 Score=84.68 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=21.5
Q ss_pred ccccccceeecccccccCCceEEEEecCCCChhHHHHHHH-H
Q 006859 364 LESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVC-L 404 (628)
Q Consensus 364 l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~-g 404 (628)
..++++++. +|++++|+|||||||||++++|+ |
T Consensus 17 ~~~~sl~v~--------~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 17 QGPGSMLKS--------VGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp -----CCEE--------CCCEEEEECSCC----CHHHHHHC-
T ss_pred cCCCCcccC--------CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 344566666 89999999999999999999999 9
No 133
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.08 E-value=9.3e-09 Score=102.30 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=65.5
Q ss_pred eeeecCCCCCCcHHHHHHH-----------HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----------VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLI 600 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----------~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 600 (628)
.+||+|++|++.+|++++. ++|||++.+|...+ +++.+.+.......|++++|||++.+..+|||++
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~ 219 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIM 219 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEE
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEE
Confidence 7899999999999999997 78999999997765 4444443322212388999999999999999999
Q ss_pred hhhccCCCHHHHHHH
Q 006859 601 CLKYSNQDEESIRHA 615 (628)
Q Consensus 601 ~l~~g~~~~~~~~~~ 615 (628)
+|++|++..++..+.
T Consensus 220 vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 220 LLAQGKLVACGTPEE 234 (266)
T ss_dssp EEETTEEEEEECHHH
T ss_pred EEECCEEEEEcCHHH
Confidence 999999876555444
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=5.5e-06 Score=85.87 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+||||+||||+++.+++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999999
No 135
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.06 E-value=8.2e-06 Score=93.67 Aligned_cols=84 Identities=18% Similarity=0.134 Sum_probs=66.5
Q ss_pred HhhcCCcc-ccccCcCchHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 429 FTRMGTVD-NLESNSSTFMTEMKETAFVMQNV-SE--RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 429 ~~~~~~~~-~~~~~~s~~s~~~~~~~~i~~~~-~~--~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
+..+|+.. .+.+..+++|+|++|+..++..+ .. +.++|||||+.|+++.+...+ ..+++.|.+.|.|+++++|+.
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L-~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRL-IETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHH-HHHHHHHHHTTCEEEEECCCH
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHH-HHHHHHHHHcCCEEEEECCCH
Confidence 56678764 47889999999999988888776 43 589999999999999777664 446677788899999999996
Q ss_pred hHHHHhhhCcce
Q 006859 505 NLSELATIYPNV 516 (628)
Q Consensus 505 ~l~~~~~~~~~v 516 (628)
+... .+++|
T Consensus 584 ~~i~---~ADrI 592 (993)
T 2ygr_A 584 DTIE---HADWI 592 (993)
T ss_dssp HHHH---TCSEE
T ss_pred HHHH---hCCEE
Confidence 6544 35555
No 136
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.06 E-value=1.7e-08 Score=104.88 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=66.2
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 140 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 219 (372)
T 1v43_A 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQ 219 (372)
T ss_dssp TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 88999999998766 4444544322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+.++.
T Consensus 220 i~~~g~~~~ 228 (372)
T 1v43_A 220 LLQIGSPTE 228 (372)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 876555544
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.05 E-value=1.8e-06 Score=81.95 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|++++|+|||||||||++++|+|.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 7999999999999999999999993
No 138
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.01 E-value=3.5e-05 Score=79.53 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=64.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHh-cCCcccCCCCCchHHHHHHhhcCCcc-ccc-cCcCchHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQ-IGCYVPAHFSTIRVVDRIFTRMGTVD-NLE-SNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~-~g~~v~~~~~~i~~~~~~~~~~~~~~-~~~-~~~s~~s~~~~~~~~i~~ 457 (628)
+|+++.|.||||+|||||+..++....... -..|+..+...-.. ...++|... .+. ....+. .+...+...+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~---~a~~lG~~~~~l~i~~~~~~-e~~l~~~~~l~ 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE---YAKKLGVDTDSLLVSQPDTG-EQALEIADMLV 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSH-HHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH---HHHHcCCCHHHeEEecCCCH-HHHHHHHHHHH
Confidence 899999999999999999999987544321 11244433222111 234455431 111 111111 11222222222
Q ss_pred hCCCCcEEEEeCCCCCCChH-------HH----H--HHH---HHHHHHHHhCCcEEEEEcCCh
Q 006859 458 NVSERSLIVMDELGRATSSS-------DG----F--AIA---WSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 458 ~~~~~~l~llDE~~~gt~~~-------~~----~--~~~---~~~~~~l~~~~~~vi~~tH~~ 504 (628)
.-..++++++|+++...... +. . .+. ..+...+.+.++++++++|..
T Consensus 136 ~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp TTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred hcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 22568999999998766311 11 1 111 222222356799999999974
No 139
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.01 E-value=8e-06 Score=80.46 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=46.3
Q ss_pred CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccC
Q 006859 362 PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESN 441 (628)
Q Consensus 362 ~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~ 441 (628)
.++.++++.+. .| ++|+||||+|||||+++|++ ... .+.+.+....+....
T Consensus 39 ~~~~~~~~~~~--------~g--~ll~G~~G~GKTtl~~~i~~---------~~~--~~~i~~~~~~~~~~~-------- 89 (254)
T 1ixz_A 39 SRFHEMGARIP--------KG--VLLVGPPGVGKTHLARAVAG---------EAR--VPFITASGSDFVEMF-------- 89 (254)
T ss_dssp HHHHHTTCCCC--------SE--EEEECCTTSSHHHHHHHHHH---------HTT--CCEEEEEHHHHHHSC--------
T ss_pred HHHHHcCCCCC--------Ce--EEEECCCCCCHHHHHHHHHH---------HhC--CCEEEeeHHHHHHHH--------
Confidence 34455555555 56 99999999999999999999 332 222222222222111
Q ss_pred cCchHHHHHHHHHHHHhC--CCCcEEEEeCC
Q 006859 442 SSTFMTEMKETAFVMQNV--SERSLIVMDEL 470 (628)
Q Consensus 442 ~s~~s~~~~~~~~i~~~~--~~~~l~llDE~ 470 (628)
.....+.+..+++.+ ..+.++++||+
T Consensus 90 ---~~~~~~~i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 90 ---VGVGAARVRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp ---TTHHHHHHHHHHHHHTTSSSEEEEEETH
T ss_pred ---hhHHHHHHHHHHHHHHhcCCeEEEehhh
Confidence 011123455566554 35789999998
No 140
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.01 E-value=1.7e-08 Score=105.08 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=66.3
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++.+|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 138 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 217 (372)
T 1g29_1 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCE
Confidence 8999999999999999998 88999999998766 4444443322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+.++.
T Consensus 218 i~~~g~~~~ 226 (372)
T 1g29_1 218 LQQVGSPDE 226 (372)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 876555444
No 141
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.00 E-value=2.8e-06 Score=79.54 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.9
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
|++++|+|||||||||++++|+|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999999
No 142
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.00 E-value=1.3e-08 Score=104.86 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=65.8
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++.+|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 144 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 223 (355)
T 1z47_A 144 HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223 (355)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 88999999997766 4444443322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+.++.
T Consensus 224 i~~~g~~~~ 232 (355)
T 1z47_A 224 VEQFGTPEE 232 (355)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 876555444
No 143
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.98 E-value=1.6e-08 Score=104.58 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=66.2
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|.+.+|...+ +.+.+.+.......|++++|||++++..+|||+++|++|+
T Consensus 132 ~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~ 211 (359)
T 2yyz_A 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGK 211 (359)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 88999999997766 4444444322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+.++.
T Consensus 212 i~~~g~~~~ 220 (359)
T 2yyz_A 212 LVQYGTPDE 220 (359)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 876655554
No 144
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.97 E-value=1.4e-08 Score=105.05 Aligned_cols=82 Identities=9% Similarity=0.088 Sum_probs=66.2
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 132 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 211 (362)
T 2it1_A 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGE 211 (362)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 88999999998766 4444544322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+.++.
T Consensus 212 i~~~g~~~~ 220 (362)
T 2it1_A 212 ILQVGTPDE 220 (362)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 876555444
No 145
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.97 E-value=1.6e-06 Score=88.18 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCccc--CCCCCchH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP--AHFSTIRV 424 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~--~~~~~i~~ 424 (628)
.|++++|+||||||||||+++|+| .++ +.+|.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~---------~l~~~~~~G~i~v 115 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA---------LLSRWPEHRRVEL 115 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH---------HHTTSTTCCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---------HHhhCCCCCeEEE
Confidence 789999999999999999999999 665 56666544
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.96 E-value=1.8e-06 Score=86.20 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=62.1
Q ss_pred cccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCc
Q 006859 363 ILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNS 442 (628)
Q Consensus 363 ~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~ 442 (628)
+++++++.+. .| ++|+||||+|||||+|+|+| ...+ +.+.+.+ .+.....
T Consensus 35 ~l~~~~l~~~--------~G--vlL~Gp~GtGKTtLakala~---------~~~~--~~i~i~g--------~~l~~~~- 84 (274)
T 2x8a_A 35 QFKALGLVTP--------AG--VLLAGPPGCGKTLLAKAVAN---------ESGL--NFISVKG--------PELLNMY- 84 (274)
T ss_dssp HHHHTTCCCC--------SE--EEEESSTTSCHHHHHHHHHH---------HTTC--EEEEEET--------TTTCSST-
T ss_pred HHHHcCCCCC--------Ce--EEEECCCCCcHHHHHHHHHH---------HcCC--CEEEEEc--------HHHHhhh-
Confidence 4555666666 66 99999999999999999999 3332 1111110 0000000
Q ss_pred CchHHHHHHHHHHHHhC--CCCcEEEEeCCCCCCChHHH------HHHHHHHHHHHH----hCCcEEEEEcCChhHHH
Q 006859 443 STFMTEMKETAFVMQNV--SERSLIVMDELGRATSSSDG------FAIAWSCCEHLL----SLKAYTIFASHMENLSE 508 (628)
Q Consensus 443 s~~s~~~~~~~~i~~~~--~~~~l~llDE~~~gt~~~~~------~~~~~~~~~~l~----~~~~~vi~~tH~~~l~~ 508 (628)
.....+.+..+++.+ ..|.++++||+-........ .......+..+. +....++.+|+.+++.+
T Consensus 85 --~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 85 --VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp --THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred --hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 111234456666654 56889999999653321110 011222333343 12456778888876543
No 147
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.95 E-value=1.1e-06 Score=95.21 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=32.6
Q ss_pred cCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHH
Q 006859 380 EAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVV 425 (628)
Q Consensus 380 ~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~ 425 (628)
+.|+.++|+|||||||||++++++| ++|+..+.+.+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~---------~i~~~~giitie 294 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMM---------FIPPDAKVVSIE 294 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGG---------GSCTTCCEEEEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHh---------hCCCCCCEEEEc
Confidence 4788999999999999999999999 999888776543
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.95 E-value=3.6e-06 Score=79.72 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|+.++|+||||||||||+++|+|.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999999993
No 149
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.94 E-value=1.7e-08 Score=104.04 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=65.6
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 126 ~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~ 205 (348)
T 3d31_A 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGK 205 (348)
T ss_dssp GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSC
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999998888 88999999998766 4444544322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+.++.
T Consensus 206 i~~~g~~~~ 214 (348)
T 3d31_A 206 LIQVGKPEE 214 (348)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 876555444
No 150
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.93 E-value=1.5e-08 Score=104.70 Aligned_cols=82 Identities=7% Similarity=0.004 Sum_probs=65.5
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+.......|++++|||++++..+|||+++|++|+
T Consensus 139 ~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~ 218 (353)
T 1oxx_K 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218 (353)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 88999999997655 4444443322223489999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+.++.
T Consensus 219 i~~~g~~~~ 227 (353)
T 1oxx_K 219 LVQVGKPED 227 (353)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 876555444
No 151
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.92 E-value=4.8e-06 Score=79.49 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|++++|+||||||||||+++|+|+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999993
No 152
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.90 E-value=3.3e-08 Score=98.17 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=63.6
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++.+|++++. ++|+|++.+|...+ +.+.+.+... ...|++++|||++.+..+|||+++|++|+
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGK 230 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 88999999998766 4444433211 13389999999999999999999999999
Q ss_pred CCHHHHHH
Q 006859 607 QDEESIRH 614 (628)
Q Consensus 607 ~~~~~~~~ 614 (628)
+..++..+
T Consensus 231 i~~~g~~~ 238 (262)
T 1b0u_A 231 IEEEGDPE 238 (262)
T ss_dssp EEEEECHH
T ss_pred EEEeCCHH
Confidence 86544333
No 153
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.90 E-value=7.3e-09 Score=103.40 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=63.8
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|++.+|...+ +++.+.+.......|++++|||++.+..+|||+++|++|+
T Consensus 142 ~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~ 221 (275)
T 3gfo_A 142 HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGR 221 (275)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 88999999998765 4444433221113389999999999999999999999999
Q ss_pred CCHHHHHH
Q 006859 607 QDEESIRH 614 (628)
Q Consensus 607 ~~~~~~~~ 614 (628)
+..++.++
T Consensus 222 i~~~g~~~ 229 (275)
T 3gfo_A 222 VILQGNPK 229 (275)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 86544433
No 154
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.88 E-value=2.2e-08 Score=97.96 Aligned_cols=82 Identities=9% Similarity=-0.017 Sum_probs=64.2
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++++|++++. ++|+|++.+|...+ +.+.+.+.......|++++|||++.+..+|||+++|++|+
T Consensus 125 ~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~ 204 (240)
T 2onk_A 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204 (240)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999998888 78999999987766 4444443222123389999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+..++..+.
T Consensus 205 i~~~g~~~~ 213 (240)
T 2onk_A 205 IVEKGKLKE 213 (240)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 865544443
No 155
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.88 E-value=9.8e-07 Score=85.19 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=31.7
Q ss_pred ccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHH
Q 006859 375 NIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRI 428 (628)
Q Consensus 375 ~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~ 428 (628)
+++|.+ ++++|+|||||||||+|++|+| .+++++|.+.+.+..
T Consensus 22 ~~~~~~--~~~~i~GpnGsGKSTll~~i~g---------~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 22 TFDLDE--LVTTLSGGNGAGKSTTMAAFVT---------ALIPDLTLLHFRNTT 64 (227)
T ss_dssp EECHHH--HHHHHHSCCSHHHHHHHHHHHH---------HHSCCTTTC------
T ss_pred EEEEcC--cEEEEECCCCCCHHHHHHHHhc---------ccccCCCeEEECCEE
Confidence 444443 7899999999999999999999 888888887665443
No 156
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.88 E-value=2.4e-06 Score=83.86 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=34.2
Q ss_pred CCCCE-EEEc-CccCcccccccceeecccccccC---CceEEEEecCCCChhHHHHHHHH
Q 006859 350 ENGPL-AIDG-GRHPILESIHNDFIPNNIFISEA---ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 350 ~~~~l-~~~~-~~~~~l~~~~~~~~~~~~~l~~~---g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+..++ ++.| +.+++|+++++++. + |++++|+||+||||||+.+.|++
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~i~--------~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 19 ETGSLLHSPFDEEQQILKKKAEEVK--------PYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -------------CHHHHHHHHTTH--------HHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred EEcceeeEEecCcchhhhhhhhhhh--------hhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 33457 8888 78889999998888 8 99999999999999999999998
No 157
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.87 E-value=3.7e-05 Score=77.46 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.6
Q ss_pred cccccCCceEEEEecCCCChhHHHHHHHHHH
Q 006859 376 IFISEAANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 376 ~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
++++ +|++++|+|+||+||||+++.+++..
T Consensus 93 i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 93 PVLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCC-SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred eecC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 68999999999999999999999943
No 158
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.86 E-value=4.6e-05 Score=77.00 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.+++++|+||||+||||+++.|++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 68899999999999999999999943
No 159
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.85 E-value=3.5e-08 Score=97.85 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=64.1
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++.+|++++. ++|||++.+|...+ +.+.+.+.... ..|++++|||++.+..+|||+++|++|+
T Consensus 158 ~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 236 (263)
T 2olj_A 158 DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGY 236 (263)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999998888 88999999998766 44444332111 3389999999999999999999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+..++..+.
T Consensus 237 i~~~g~~~~ 245 (263)
T 2olj_A 237 IIEEGKPED 245 (263)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 865544443
No 160
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.85 E-value=5.9e-06 Score=87.23 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=32.2
Q ss_pred ccCCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHH
Q 006859 379 SEAANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVV 425 (628)
Q Consensus 379 ~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~ 425 (628)
..+|++++|+|||||||||+|++++| ++++..+.+...
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg---------~l~~~~g~I~~~ 201 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQ---------ELNSSERNILTV 201 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHH---------HHCCTTSCEEEE
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHh---------hcCCCCCEEEEe
Confidence 35789999999999999999999999 777777766543
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.83 E-value=8.3e-06 Score=81.59 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.| ++|+||||+|||||+++|++
T Consensus 74 ~g--vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 74 KG--VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CE--EEEECCTTSSHHHHHHHHHH
T ss_pred Ce--EEEECCCcChHHHHHHHHHH
Confidence 56 99999999999999999999
No 162
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.81 E-value=0.00021 Score=73.52 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=61.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHh-cCCcccCCCCCchHHHHHHhhcCCcc-cc-ccCcCchHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQ-IGCYVPAHFSTIRVVDRIFTRMGTVD-NL-ESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~-~g~~v~~~~~~i~~~~~~~~~~~~~~-~~-~~~~s~~s~~~~~~~~i~~ 457 (628)
+|+++.|+||||+|||||+.+++....... -..|+..+...-.. ...++|... .+ .....+. ........-+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~---ra~rlgv~~~~l~i~~~~~~-e~~l~~~~~l~ 135 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV---YAKNLGVDLKSLLISQPDHG-EQALEIVDELV 135 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHHTCCGGGCEEECCSSH-HHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH---HHHHcCCchhhhhhhhccCH-HHHHHHHHHHh
Confidence 899999999999999999999998543211 01244333222111 344555431 11 1111111 11112211111
Q ss_pred hCCCCcEEEEeCCCCCCCh--HH-----------HHHHHH---HHHHHHHhCCcEEEEEcCC
Q 006859 458 NVSERSLIVMDELGRATSS--SD-----------GFAIAW---SCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 458 ~~~~~~l~llDE~~~gt~~--~~-----------~~~~~~---~~~~~l~~~~~~vi~~tH~ 503 (628)
....++++++|.+..-... .+ ...+.. .+.....+.+++++++.|-
T Consensus 136 ~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 2356899999998654431 11 111111 1122223568999998886
No 163
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.80 E-value=7.2e-06 Score=82.41 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.+.+++|+||+|||||||.+.|++..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999854
No 164
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.80 E-value=8.2e-06 Score=76.47 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|++++|+|||||||||++|.|++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999999999
No 165
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.73 E-value=0.00015 Score=75.79 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=63.5
Q ss_pred eEEEEecCCCChhHHHHHHHHHHHHH-hcC-CcccCCCC--CchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLIVILA-QIG-CYVPAHFS--TIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV 459 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~~~~~-~~g-~~v~~~~~--~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~ 459 (628)
.++|+||+|+||||+++.+++...-. ... .++.+... ....+..++..++.... ..+. ....-...+...+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGL-SRDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCC-CHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCC-CHHHHHHHHHHHHhhc
Confidence 89999999999999999999832111 011 12222221 12344555555553210 0011 1122223344444445
Q ss_pred CCCcEEEEeCCCCCCChHHHHHHHHHHHHHH---Hh---CCcEEEEEcCChhHH
Q 006859 460 SERSLIVMDELGRATSSSDGFAIAWSCCEHL---LS---LKAYTIFASHMENLS 507 (628)
Q Consensus 460 ~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l---~~---~~~~vi~~tH~~~l~ 507 (628)
..+.++++||+... +. .....+...+ .. .+..++++||+.++.
T Consensus 124 ~~~~vlilDE~~~l-~~----~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-AP----DILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CH----HHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-ch----HHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 66889999999544 22 1122333333 23 477889999987554
No 166
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.73 E-value=7.9e-08 Score=94.17 Aligned_cols=80 Identities=15% Similarity=0.004 Sum_probs=63.4
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +.+.+.+... ...|++++|||++.+..+|||+++|++|+
T Consensus 138 ~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 216 (240)
T 1ji0_A 138 GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQ 216 (240)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 8999999999999998888 88999999998776 4444443221 23388999999999999999999999999
Q ss_pred CCHHHHHH
Q 006859 607 QDEESIRH 614 (628)
Q Consensus 607 ~~~~~~~~ 614 (628)
+...+..+
T Consensus 217 i~~~g~~~ 224 (240)
T 1ji0_A 217 IVLEGKAS 224 (240)
T ss_dssp EEEEEEHH
T ss_pred EEEEcCHH
Confidence 86544333
No 167
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.73 E-value=2.2e-05 Score=72.90 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+| +++|+|||||||||++++|.+
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 55 999999999999999999999
No 168
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.71 E-value=5.4e-05 Score=82.68 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=51.9
Q ss_pred cCcCch-HHHHHHHHHHHHhC-CCC--cEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHHh
Q 006859 440 SNSSTF-MTEMKETAFVMQNV-SER--SLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSELA 510 (628)
Q Consensus 440 ~~~s~~-s~~~~~~~~i~~~~-~~~--~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~~ 510 (628)
.+++.+ |+|++|+..++..+ ..| +++|+|||++|.|+.....+.. ++..+.+ +.+|+++||++++...+
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~-~l~~~~~-~~~vi~itH~~~~~~~~ 464 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLAD-TRQVLVVTHLAQIAARA 464 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHH-HHHHHHH-HSEEEEECCCHHHHHHS
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHH-HHHHHhC-CCEEEEEecCHHHHHhC
Confidence 344556 89999887777655 667 9999999999999876555443 4445555 89999999997766543
No 169
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.71 E-value=1.6e-05 Score=73.94 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=23.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|++++|+||||||||||++.|++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999999999
No 170
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.65 E-value=1.1e-07 Score=93.74 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=63.0
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +.+.+.+.......|+++++||++.+..+||++++|++|+
T Consensus 127 ~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 127 TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 8999999999999999988 88999999998766 4444443221112389999999999999999999999998
Q ss_pred CCHHHHHH
Q 006859 607 QDEESIRH 614 (628)
Q Consensus 607 ~~~~~~~~ 614 (628)
..++..+
T Consensus 207 -~~~g~~~ 213 (253)
T 2nq2_C 207 -FKFGETR 213 (253)
T ss_dssp -EEEEEHH
T ss_pred -EecCCHH
Confidence 5444333
No 171
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.64 E-value=4.3e-06 Score=88.16 Aligned_cols=124 Identities=17% Similarity=0.115 Sum_probs=67.6
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH----------HHHhcCCcccCC----------CCCch-------HHHHHHhhcC
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV----------ILAQIGCYVPAH----------FSTIR-------VVDRIFTRMG 433 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~----------~~~~~g~~v~~~----------~~~i~-------~~~~~~~~~~ 433 (628)
.+..++|+|+|||||||||++|++.. +-..+| +++.. .+.+. +....+....
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G-~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee-EEEecCcceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 88999999999999999999999842 111222 12111 11100 0011111110
Q ss_pred -Cc------cccccCcCchHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC-C-
Q 006859 434 -TV------DNLESNSSTFMTEMKETAFVMQNV-SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH-M- 503 (628)
Q Consensus 434 -~~------~~~~~~~s~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH-~- 503 (628)
.. +........++.+++++..+...+ ..|.++++ .+.|.... .....+.+.+.+.+.+++.+|. .
T Consensus 235 ra~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 235 RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp SSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCc
Confidence 00 000334456788888887765543 67888886 55665443 3334455555556666666664 3
Q ss_pred hhHHHHh
Q 006859 504 ENLSELA 510 (628)
Q Consensus 504 ~~l~~~~ 510 (628)
.++.++.
T Consensus 310 ~gi~eL~ 316 (416)
T 1udx_A 310 AGLPALK 316 (416)
T ss_dssp TTHHHHH
T ss_pred cCHHHHH
Confidence 2354433
No 172
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.63 E-value=2.4e-05 Score=74.06 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|++++|+|||||||||+++.|++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999999994
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.63 E-value=1.5e-05 Score=75.45 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|++++|+|||||||||+++.|++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999999999
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.62 E-value=0.00022 Score=76.46 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=31.3
Q ss_pred CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHH
Q 006859 362 PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVIL 408 (628)
Q Consensus 362 ~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~ 408 (628)
+.|+.+..-+. +|++++|.|++|+|||||+..+++....
T Consensus 191 ~~LD~~~gGl~--------~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 191 TELDRMTSGFQ--------RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp HHHHHHHSSBC--------TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34555444566 8999999999999999999999996544
No 175
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.60 E-value=9.1e-05 Score=79.08 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=56.5
Q ss_pred CceEEEEecCCCChhHHHHHHHHHHHHHhcCC---cccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC---YVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~---~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
+..+.|.||+|+|||||++.|+.......-|. ++.+.. ....+...+.. . ....+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~----~~~~~~~~~~~------~---------~~~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMKE------G---------KLNEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH----HHHHHHHHHHT------T---------CHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH----HHHHHHHHHHc------c---------cHHHHHHH
Confidence 46799999999999999999998432221111 111100 11111111100 0 01112222
Q ss_pred CC-CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 459 VS-ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 459 ~~-~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
.. .++++++||+...............+++.+.+.+..++++||.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 24 7899999999654442122222334555566778899999987
No 176
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.59 E-value=2.2e-07 Score=90.68 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=60.4
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++++|++++. ++|+|++.+|...+ +++.+.+.......|++++|||++. ..+|||+++|++|+
T Consensus 144 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~~G~ 222 (235)
T 3tif_A 144 NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGE 222 (235)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEECCE
Confidence 8999999999999999988 88999999997766 4444443222223389999999995 48999999999999
Q ss_pred CCHH
Q 006859 607 QDEE 610 (628)
Q Consensus 607 ~~~~ 610 (628)
+..+
T Consensus 223 i~~~ 226 (235)
T 3tif_A 223 VERE 226 (235)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8554
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.58 E-value=3.7e-05 Score=73.30 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=23.7
Q ss_pred cCCceEEEEecCCCChhHHHHHHHH
Q 006859 380 EAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 380 ~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
++|++++|+|||||||||+++.|++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 3799999999999999999999999
No 178
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.58 E-value=1.9e-07 Score=94.46 Aligned_cols=82 Identities=12% Similarity=0.195 Sum_probs=66.0
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++++|++++. ++|+|++.+|...+ +.+.|.+... ..|+++++|+++.+.. ||||++|++|+
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~ 265 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGC 265 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCE
Confidence 6899999999999999998 88999999998766 5555544321 2388999999999876 99999999999
Q ss_pred CCHHHHHHHHHH
Q 006859 607 QDEESIRHALQN 618 (628)
Q Consensus 607 ~~~~~~~~~l~~ 618 (628)
+.+.+..+.+..
T Consensus 266 iv~~G~~~el~~ 277 (306)
T 3nh6_A 266 IVERGRHEALLS 277 (306)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 987766665443
No 179
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.58 E-value=0.00015 Score=66.77 Aligned_cols=68 Identities=7% Similarity=-0.029 Sum_probs=47.9
Q ss_pred cCcCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHHH
Q 006859 440 SNSSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSEL 509 (628)
Q Consensus 440 ~~~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~~ 509 (628)
...+.+|+|++++..++..+ .++++++||||++|+|+.....+.. ++..+. .+.+++++||+..+...
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~-~~~~~ivith~~~~~~~ 132 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESS-KESQFIVITLRDVMMAN 132 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHT-TTSEEEEECSCHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhc-cCCEEEEEEecHHHHHh
Confidence 34556899999987777665 4579999999999998865555333 333333 35689999999655433
No 180
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.57 E-value=1.8e-05 Score=77.59 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCceEEEEecCCCChhHHHHHHH---HHHHHHhcCCcccCCCCCch
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVC---LIVILAQIGCYVPAHFSTIR 423 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~---g~~~~~~~g~~v~~~~~~i~ 423 (628)
.+++++|+|||||||||+++.|+ | +.+++.|.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg---------~~~~~~G~i~ 62 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG---------LQHLSSGHFL 62 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC---------CCCEEHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC---------CeEecHHHHH
Confidence 46899999999999999999999 6 6555555543
No 181
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.57 E-value=2.2e-05 Score=80.76 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCccc-CCCCCchHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVP-AHFSTIRVV 425 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~-~~~~~i~~~ 425 (628)
.|++++|+||||+|||||+++|+| ..+ +..|.+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g---------~~~~~~~G~I~~~ 250 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG---------LQNEILTNDVSNV 250 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC---------CSSCCCCC-----
T ss_pred CCCEEEEECCCCccHHHHHHHHhc---------cccccccCCcccc
Confidence 689999999999999999999999 888 888877654
No 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.56 E-value=2.7e-05 Score=78.81 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=27.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRV 424 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~ 424 (628)
.|++++|+||||||||||+++|+| ..++..|.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g---------~~~~~~G~i~~ 202 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP---------GLKLRVSEVSE 202 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST---------TCCCC------
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc---------cccccccceec
Confidence 789999999999999999999999 88888888765
No 183
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.56 E-value=3.6e-05 Score=72.96 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|++++|+|||||||||+++.|++
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999999999
No 184
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.55 E-value=9.9e-08 Score=94.25 Aligned_cols=80 Identities=6% Similarity=0.010 Sum_probs=63.2
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +.+.|.+... ...|++++||+++.+..+|||+++|++|+
T Consensus 145 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 145 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 8899999999999998888 88999999998766 4444443211 13388999999999999999999999999
Q ss_pred CCHHHHHH
Q 006859 607 QDEESIRH 614 (628)
Q Consensus 607 ~~~~~~~~ 614 (628)
+..++..+
T Consensus 224 i~~~g~~~ 231 (256)
T 1vpl_A 224 IVETGTVE 231 (256)
T ss_dssp EEEEEEHH
T ss_pred EEEecCHH
Confidence 86544333
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=3.7e-05 Score=72.64 Aligned_cols=36 Identities=19% Similarity=0.038 Sum_probs=23.3
Q ss_pred cCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHH
Q 006859 361 HPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 361 ~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.++++++.+. +|++++|+||+||||||+.+.|+.
T Consensus 12 ~~~~~~~~~~~~--------~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 12 DLGTENLYFQSN--------AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp --------------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCceeEecC--------CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 455666666666 899999999999999999999998
No 186
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.54 E-value=0.0001 Score=78.92 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEecCCCChhHHHHHHHH
Q 006859 385 VIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 385 ~~i~GpNGsGKSTllk~i~g 404 (628)
+.|+||+|+||||++|.+++
T Consensus 52 vLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999
No 187
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.53 E-value=1.8e-05 Score=81.50 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=33.3
Q ss_pred EEEEcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHH
Q 006859 354 LAIDGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 354 l~~~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+...+|+..++++++..+.+.- .-....+.++|+||||+|||||+++|++
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~-~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAK-MRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHH-HHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHH-hcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4444566667777655554100 0000127899999999999999999999
No 188
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.52 E-value=5.7e-08 Score=96.25 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=62.1
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++.+|++++. ++|||++.+|...+ +.+.+.+... ...|+++++||++.+..+|||+++|++|+
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 230 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCSTTGGGCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 8999999999999999988 78999999998766 4444433211 13389999999999999999999999999
Q ss_pred CCHHH
Q 006859 607 QDEES 611 (628)
Q Consensus 607 ~~~~~ 611 (628)
+..++
T Consensus 231 i~~~g 235 (257)
T 1g6h_A 231 IIAEG 235 (257)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 86443
No 189
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.51 E-value=1e-07 Score=95.34 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=63.3
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhh--HHHHHHHHHHHHHHHHHHhhhc
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEIN--CLQYKQIQMLYHAAQRLICLKY 604 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~--~~~~h~~~~~~~~~~~~~~l~~ 604 (628)
.+||+|++|++.+|++++. ++|+|++.+|...+ +++.|.+.... ..|+ +++|||++.+..+|||+++|++
T Consensus 160 ~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~ 238 (279)
T 2ihy_A 160 GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKD 238 (279)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEEC
Confidence 8999999999999999988 88999999998766 44444432211 3388 9999999999999999999999
Q ss_pred cCCCHHHHHH
Q 006859 605 SNQDEESIRH 614 (628)
Q Consensus 605 g~~~~~~~~~ 614 (628)
|++..++..+
T Consensus 239 G~i~~~g~~~ 248 (279)
T 2ihy_A 239 GQSIQQGAVE 248 (279)
T ss_dssp TEEEEEEEHH
T ss_pred CEEEEECCHH
Confidence 9986543333
No 190
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.47 E-value=0.00029 Score=71.60 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
++++++|+||||+||||++..|++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999994
No 191
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.47 E-value=1.7e-07 Score=93.45 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +++.|.+.......|+++++|+++.+.. ||++++|++|+
T Consensus 155 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~ 233 (271)
T 2ixe_A 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGS 233 (271)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCE
Confidence 7899999999999999888 88999999998776 5555544322123388999999998864 99999999999
Q ss_pred CCHHHHHHHH
Q 006859 607 QDEESIRHAL 616 (628)
Q Consensus 607 ~~~~~~~~~l 616 (628)
+..++..+.+
T Consensus 234 i~~~g~~~~l 243 (271)
T 2ixe_A 234 VCEQGTHLQL 243 (271)
T ss_dssp EEEEECHHHH
T ss_pred EEEECCHHHH
Confidence 8655444443
No 192
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.45 E-value=0.00014 Score=75.68 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=60.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHH---hcC-CcccCCC--CCchHHHHHHhhcCCccccccCcCchHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILA---QIG-CYVPAHF--STIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAF 454 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~---~~g-~~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~ 454 (628)
.+..++|+||+|+||||+++.++...--. ... .++.+.. ........++..++.... ..+ .....-...+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~-~~~-~~~~~~~~~l~~ 121 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP-FTG-LSIAELYRRLVK 121 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC-SSS-CCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCC-CCHHHHHHHHHH
Confidence 56789999999999999999999843221 111 0111110 111223333333332110 011 111222233444
Q ss_pred HHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH---hCCcEEEEEcCChhH
Q 006859 455 VMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL---SLKAYTIFASHMENL 506 (628)
Q Consensus 455 i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~---~~~~~vi~~tH~~~l 506 (628)
.+.....+.++++||+....+..+ ......+.+.+. ..+..++++||..++
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~-~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYN-DDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSC-STHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCc-CHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 444445588999999932211000 122333444442 336788999998653
No 193
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.45 E-value=2.5e-05 Score=76.83 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCceEEEEecCCCChhHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVC 403 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~ 403 (628)
+|.+++|+|||||||||++|.|+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999999999
No 194
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.45 E-value=4.3e-07 Score=89.24 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=63.2
Q ss_pred eeeecCCCCCCcHHHHHHH--H----------CCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 006859 534 FQLKDGPRHVPHYGLLLAE--V----------AGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRL 599 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~--~----------~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 599 (628)
..||+|++|++.+|++++. - +|+|++.+|...+ +.+.+.+.... ..|+++++||++.+..+||++
T Consensus 125 ~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEE
Confidence 8999999999999999988 3 6799999998766 44444433211 338899999999999999999
Q ss_pred HhhhccCCCHHHHHH
Q 006859 600 ICLKYSNQDEESIRH 614 (628)
Q Consensus 600 ~~l~~g~~~~~~~~~ 614 (628)
++|++|++..++..+
T Consensus 204 ~~l~~G~i~~~g~~~ 218 (249)
T 2qi9_C 204 WLLKGGKMLASGRRE 218 (249)
T ss_dssp EEEETTEEEEEEEHH
T ss_pred EEEECCEEEEeCCHH
Confidence 999999986544333
No 195
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.43 E-value=1.1e-07 Score=94.75 Aligned_cols=78 Identities=12% Similarity=0.160 Sum_probs=62.4
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +.+.+.+.... ..|++++|||++.+..+|||+++|++|+
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~ 215 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGK 215 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 8999999999999998888 88999999998766 44444432211 3389999999999999999999999999
Q ss_pred CCHHHH
Q 006859 607 QDEESI 612 (628)
Q Consensus 607 ~~~~~~ 612 (628)
+..++.
T Consensus 216 i~~~g~ 221 (266)
T 2yz2_A 216 KVFDGT 221 (266)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 865433
No 196
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.43 E-value=0.00044 Score=71.18 Aligned_cols=124 Identities=12% Similarity=0.118 Sum_probs=63.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHh----cC---CcccCCCC-CchHHHHHHhhcCCcc-----ccc--cC--cC
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQ----IG---CYVPAHFS-TIRVVDRIFTRMGTVD-----NLE--SN--SS 443 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~----~g---~~v~~~~~-~i~~~~~~~~~~~~~~-----~~~--~~--~s 443 (628)
.|+++.|.||+|+|||||+..++..+.+.. .| .|+..+.. ..........++|... ++. .. ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 899999999999999999999998432210 01 13333321 1222333445555431 110 11 01
Q ss_pred chHHHHHHHHHHHHhC-CCCcEEEEeCCCCCCChH--------HHH----HHHHHHHHHHHhCCcEEEEEcCCh
Q 006859 444 TFMTEMKETAFVMQNV-SERSLIVMDELGRATSSS--------DGF----AIAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 444 ~~s~~~~~~~~i~~~~-~~~~l~llDE~~~gt~~~--------~~~----~~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
.+..-..++...+... ..++++++|+++.-.... +.. .+...+.....+.+++|+++.|..
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 1111111222333332 568999999995432110 111 111122232335689999999874
No 197
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.41 E-value=2.6e-07 Score=89.47 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=58.9
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|++.+|++++. ++|||++.+|...+ +.+.+.+.... ..|++++|||++.+ .+||++++|++|+
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~ 216 (224)
T 2pcj_A 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGK 216 (224)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCE
Confidence 8999999999988888888 78999999998766 44444332211 33899999999987 8999999999998
Q ss_pred CCH
Q 006859 607 QDE 609 (628)
Q Consensus 607 ~~~ 609 (628)
+..
T Consensus 217 i~~ 219 (224)
T 2pcj_A 217 VVG 219 (224)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 198
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=6.7e-05 Score=68.88 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.+++|+|||||||||+++.|++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999999
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.40 E-value=0.00018 Score=77.62 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.| ++|+||||+|||||+|.|++
T Consensus 65 ~G--vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 65 KG--VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp SE--EEEECSSSSSHHHHHHHHHH
T ss_pred ce--EEEECCCCCCHHHHHHHHHH
Confidence 55 99999999999999999999
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.40 E-value=6e-05 Score=71.34 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+|||||||||+++.|++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999999
No 201
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.40 E-value=2.8e-07 Score=90.85 Aligned_cols=80 Identities=6% Similarity=-0.052 Sum_probs=58.9
Q ss_pred ee-eecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHhhhc
Q 006859 534 FQ-LKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHA-AQRLICLKY 604 (628)
Q Consensus 534 ~~-l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~-~~~~~~l~~ 604 (628)
.+ ||+|++|++.+|++++. ++|+|++.+|...+ +++.+.+... ...|++++|||++.+..+ |||+++|++
T Consensus 141 ~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~ 219 (250)
T 2d2e_A 141 NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMD 219 (250)
T ss_dssp TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEET
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEEC
Confidence 67 99999999999999999 88999999998766 5555543311 233889999999998888 599999999
Q ss_pred cCCCHHHHHH
Q 006859 605 SNQDEESIRH 614 (628)
Q Consensus 605 g~~~~~~~~~ 614 (628)
|++...+..+
T Consensus 220 G~i~~~g~~~ 229 (250)
T 2d2e_A 220 GRVVATGGPE 229 (250)
T ss_dssp TEEEEEESHH
T ss_pred CEEEEEeCHH
Confidence 9986543333
No 202
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.40 E-value=7.7e-05 Score=68.71 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|++++|+|||||||||+++.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 6889999999999999999999984
No 203
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.39 E-value=2.2e-05 Score=79.18 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=23.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRV 424 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~ 424 (628)
+|++++|+||||+|||||+++|+| ..++..|.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g---------~~~~~~G~I~~ 206 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP---------ELGLRTNEISE 206 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc---------cccccccceee
Confidence 799999999999999999999999 77777777654
No 204
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.37 E-value=8.6e-05 Score=75.69 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=21.1
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
++++|+|+||||||||+|.|.|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHh
Confidence 5899999999999999999999
No 205
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.37 E-value=0.0003 Score=71.74 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..+.|+||+|+||||+++.++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999998
No 206
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.36 E-value=3.2e-05 Score=78.49 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=20.4
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+|||||||||+++.|++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999999
No 207
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.34 E-value=5.8e-05 Score=73.14 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|.+++|.|||||||||+++.|++.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999999993
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.33 E-value=6.5e-05 Score=71.01 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.8
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.|+||+|+||||+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999998
No 209
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.32 E-value=2.4e-07 Score=96.78 Aligned_cols=88 Identities=11% Similarity=0.143 Sum_probs=67.5
Q ss_pred eecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCCC
Q 006859 536 LKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSNQD 608 (628)
Q Consensus 536 l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~~~ 608 (628)
||+|++|++++|++++. ++|+|.+.+|...+ +.+.|.+.. ...|+++++|+++. ...|||+++|++|++.
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~-~~~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEA-MLECDQFLVIEENKVR 232 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGG-GTTCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHH-HHhCCEEEEEECCEEE
Confidence 99999999999999998 88999999998765 555554432 12488999999864 5669999999999998
Q ss_pred HHHHHHHH-HHHHHHHhcc
Q 006859 609 EESIRHAL-QNLKESFIDG 626 (628)
Q Consensus 609 ~~~~~~~l-~~~~~~~~~~ 626 (628)
..+.++.+ ..+.+.|+..
T Consensus 233 ~~g~~~el~~~p~~~~va~ 251 (390)
T 3gd7_A 233 QYDSILELYHYPADRFVAG 251 (390)
T ss_dssp EESSHHHHHHCCSBHHHHH
T ss_pred EECCHHHHHhCCCchHHHh
Confidence 77666553 4455555543
No 210
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.31 E-value=5.9e-05 Score=78.41 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=30.2
Q ss_pred CcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHH
Q 006859 362 PILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 362 ~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
++++++++.+. +|++++|+||||+|||||++.|++
T Consensus 157 ~~l~~~~~~i~--------~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIP--------KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCT--------TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccC--------CCCEEEEECCCCCCHHHHHHHHHh
Confidence 45666666666 899999999999999999999999
No 211
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.29 E-value=0.00012 Score=68.66 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|++++|+||||||||||++.|.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 789999999999999999999998
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.25 E-value=0.00054 Score=72.30 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
++.+++++||||+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999984
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.24 E-value=0.00015 Score=65.02 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.0
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.+|+|||||||||++.+|..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 214
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.21 E-value=2.5e-07 Score=91.67 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=64.8
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH-HHHhhhcc
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQ-RLICLKYS 605 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~-~~~~l~~g 605 (628)
.+||+|++|++.+|++++. ++|+|++.+|...+ +.+.|.+. .. |++++|||++.+..+|| ++++|++|
T Consensus 127 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~-~~---tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 127 YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-GK---EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHS-CS---EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHh-cC---cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 8999999999999999988 88999999998766 55556543 22 88999999999999999 99999999
Q ss_pred CCCHHHHHHH
Q 006859 606 NQDEESIRHA 615 (628)
Q Consensus 606 ~~~~~~~~~~ 615 (628)
++...+..+.
T Consensus 203 ~i~~~g~~~~ 212 (263)
T 2pjz_A 203 RLQGPISVSE 212 (263)
T ss_dssp EEEEEEEHHH
T ss_pred EEEEecCHHH
Confidence 9876555444
No 215
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.20 E-value=4.9e-06 Score=92.33 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=65.9
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|+.++|+++++ ++|||++.+|...+ +.+.+.+..+ ..|+++++|+++.+. .|||+++|++|+
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~ 555 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLSTIE-QADEILVVDEGE 555 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-hCCEEEEEECCE
Confidence 6899999999999999988 88999999998876 5555544321 238899999999875 799999999999
Q ss_pred CCHHHHHHHHH
Q 006859 607 QDEESIRHALQ 617 (628)
Q Consensus 607 ~~~~~~~~~l~ 617 (628)
+.+++..+++.
T Consensus 556 i~~~g~~~~l~ 566 (582)
T 3b5x_A 556 IIERGRHADLL 566 (582)
T ss_pred EEEECCHHHHH
Confidence 98777666654
No 216
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.18 E-value=5.2e-07 Score=89.38 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=62.6
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +.+.+.+... ..|+++++|+++.+. .||++++|++|+
T Consensus 154 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~~~~-~~d~i~~l~~G~ 230 (260)
T 2ghi_A 154 MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLSTIS-SAESIILLNKGK 230 (260)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGST-TCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHH-hCCEEEEEECCE
Confidence 7899999999999999998 88999999998776 4444443221 238899999999875 599999999999
Q ss_pred CCHHHHHHHH
Q 006859 607 QDEESIRHAL 616 (628)
Q Consensus 607 ~~~~~~~~~l 616 (628)
+...+..+.+
T Consensus 231 i~~~g~~~~l 240 (260)
T 2ghi_A 231 IVEKGTHKDL 240 (260)
T ss_dssp EEEEECHHHH
T ss_pred EEEECCHHHH
Confidence 8655444443
No 217
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.17 E-value=0.00027 Score=68.30 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=22.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.+..+.|+||+|+||||+++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999883
No 218
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.16 E-value=0.001 Score=67.91 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.|+++.|.||+|+|||||+..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 89999999999999999999998743
No 219
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.15 E-value=6.3e-05 Score=69.17 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=21.0
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
++++|+||||||||||++.|++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999999
No 220
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.13 E-value=0.00028 Score=80.58 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|+.++|+||+||||||++.++.+
T Consensus 108 ~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 108 NNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999888855
No 221
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.11 E-value=9.4e-07 Score=86.64 Aligned_cols=79 Identities=4% Similarity=0.114 Sum_probs=61.5
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +.+.+.+.. ...|+++++|+++.+. .|||+++|++|+
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~ 214 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTIV-DADKIYFIEKGQ 214 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHHHH-HCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChHHHH-hCCEEEEEECCE
Confidence 7899999999999999998 88999999987654 444443321 1238899999999875 699999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+..+.
T Consensus 215 i~~~g~~~~ 223 (243)
T 1mv5_A 215 ITGSGKHNE 223 (243)
T ss_dssp ECCCSCHHH
T ss_pred EEEeCCHHH
Confidence 865544444
No 222
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.11 E-value=0.00099 Score=67.16 Aligned_cols=24 Identities=21% Similarity=0.330 Sum_probs=22.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..+.|.||+|+||||+.+.++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 567899999999999999999998
No 223
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.08 E-value=0.0011 Score=76.10 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=56.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHhC-
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQNV- 459 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~~- 459 (628)
.++.++|+||||+||||++|.|++ ..+.....+. ...+. + ...+.+ ..++..+++.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~---------~l~~~~i~v~--~~~l~--~------~~~g~~---~~~l~~vf~~a~ 294 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN---------ETGAFFFLIN--GPEIM--S------KLAGES---ESNLRKAFEEAE 294 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH---------TTTCEEEEEE--HHHHS--S------SSTTHH---HHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH---------HcCCcEEEEE--chHhh--h------hhhhhH---HHHHHHHHHHHH
Confidence 678899999999999999999999 4433221111 11110 0 111111 12344444443
Q ss_pred -CCCcEEEEeCCCCCCC------hHHHHHHHHHHHHHHHh----CCcEEEEEcCChh
Q 006859 460 -SERSLIVMDELGRATS------SSDGFAIAWSCCEHLLS----LKAYTIFASHMEN 505 (628)
Q Consensus 460 -~~~~l~llDE~~~gt~------~~~~~~~~~~~~~~l~~----~~~~vi~~tH~~~ 505 (628)
..+.++++||+..... ......+...++..+.. .+..++.+||..+
T Consensus 295 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~ 351 (806)
T 1ypw_A 295 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp HHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTT
T ss_pred hcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCch
Confidence 4689999999943221 11112223334444432 2467888888853
No 224
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.07 E-value=4.2e-07 Score=90.41 Aligned_cols=81 Identities=4% Similarity=-0.065 Sum_probs=63.1
Q ss_pred eeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHhhhccC
Q 006859 535 QLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHA-AQRLICLKYSN 606 (628)
Q Consensus 535 ~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~-~~~~~~l~~g~ 606 (628)
.||+|++|++.+|++++. ++|+|++.+|...+ +.+.+.+... ...|++++|||++.+..+ |||+++|++|+
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGR 242 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEEEECCE
Confidence 499999999999999998 88999999998766 5555543211 133889999999988776 89999999999
Q ss_pred CCHHHHHHHH
Q 006859 607 QDEESIRHAL 616 (628)
Q Consensus 607 ~~~~~~~~~l 616 (628)
+..++..+.+
T Consensus 243 i~~~g~~~~~ 252 (267)
T 2zu0_C 243 IVKSGDFTLV 252 (267)
T ss_dssp EEEEECTTHH
T ss_pred EEEEcCHHHH
Confidence 8655444443
No 225
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.05 E-value=0.0015 Score=65.57 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..+.|.||+|+||||+++.++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 457799999999999999999998
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.05 E-value=0.0019 Score=63.25 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
-++|+||+|+||||+++.+++
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 389999999999999999998
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.04 E-value=0.00027 Score=71.38 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcccCCCCCchH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYVPAHFSTIRV 424 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v~~~~~~i~~ 424 (628)
.|++++|+||||+|||||+++|+ . . ++..|.+..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~--------~-~~~~G~i~~ 197 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-G--------E-ELRTQEVSE 197 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-S--------C-CCCCSCC--
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-H--------h-hCccccccc
Confidence 68999999999999999999988 3 2 345677765
No 228
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.04 E-value=4.4e-07 Score=89.19 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=61.9
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +++.+.+.. ...|+++++|+++.+. .|||+++|++|+
T Consensus 144 ~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~~~~-~~d~v~~l~~G~ 220 (247)
T 2ff7_A 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVK-NADRIIVMEKGK 220 (247)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGGGGT-TSSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHH-hCCEEEEEECCE
Confidence 6899999999999999888 88999999988766 444444331 1338999999999875 499999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+..+.
T Consensus 221 i~~~g~~~~ 229 (247)
T 2ff7_A 221 IVEQGKHKE 229 (247)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 865544443
No 229
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.04 E-value=0.0057 Score=62.99 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=62.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHh-cCCcccCCCCCchHHHHHHhhcCCcc-ccc-cCcCchHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQ-IGCYVPAHFSTIRVVDRIFTRMGTVD-NLE-SNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~-~g~~v~~~~~~i~~~~~~~~~~~~~~-~~~-~~~s~~s~~~~~~~~i~~ 457 (628)
.|+++.|.||+|+|||||...++....... -..|+..+...-+. ...++|... .+. ....+. .....+...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~---~a~~~g~~~~~l~i~~~~~~-e~~~~~~~~l~ 137 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTG-EQALEICDALA 137 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSH-HHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHH---HHHHcCCChhheeeeCCCCH-HHHHHHHHHHH
Confidence 899999999999999999999887543321 11244443221111 234455421 110 111111 11222221111
Q ss_pred hCCCCcEEEEeCCCCCCChHH-----------HH--H---HHHHHHHHHHhCCcEEEEEcCCh
Q 006859 458 NVSERSLIVMDELGRATSSSD-----------GF--A---IAWSCCEHLLSLKAYTIFASHME 504 (628)
Q Consensus 458 ~~~~~~l~llDE~~~gt~~~~-----------~~--~---~~~~~~~~l~~~~~~vi~~tH~~ 504 (628)
....++++++|.++.-....+ .. . ....+...+.+.+++|+++.|..
T Consensus 138 ~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 125689999999976543211 01 1 11222333346789999998863
No 230
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.01 E-value=6.5e-07 Score=87.39 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=62.7
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHH--HhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRIT--KKEVKRMEINCLQYKQIQMLYHAAQRLICLKY 604 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~ 604 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +++.+. .... ...|+++++|+++.+ ..||++++|++
T Consensus 126 ~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 126 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTG-GGSSEEEEEET
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHH-HhCCEEEEEeC
Confidence 7899999999999999998 88999999998765 556563 1111 133889999999887 47999999999
Q ss_pred cCCCHHHHHHHH
Q 006859 605 SNQDEESIRHAL 616 (628)
Q Consensus 605 g~~~~~~~~~~l 616 (628)
|++...+..+.+
T Consensus 204 G~i~~~g~~~~~ 215 (237)
T 2cbz_A 204 GKISEMGSYQEL 215 (237)
T ss_dssp TEEEEEECHHHH
T ss_pred CEEEEeCCHHHH
Confidence 998655444443
No 231
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.99 E-value=0.00073 Score=71.88 Aligned_cols=66 Identities=17% Similarity=0.045 Sum_probs=47.4
Q ss_pred cCchHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHHH
Q 006859 442 SSTFMTEMKETAFVMQNV-----SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLSE 508 (628)
Q Consensus 442 ~s~~s~~~~~~~~i~~~~-----~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~~ 508 (628)
.+.+|+|++++..++..+ .+|++++||||++++|+.....+.. .+..+...+.+++++||+.++..
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQFIVISLKNTMFE 401 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBEEEEECSCHHHHT
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCEEEEEECCHHHHH
Confidence 456899999877776655 4789999999999998765544333 33334334789999999965544
No 232
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.99 E-value=2.4e-06 Score=94.87 Aligned_cols=82 Identities=9% Similarity=0.105 Sum_probs=66.2
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|+.++|+++++ ++|+|++.+|...+ +.+.+.+.. ...|+++++|+++.+. .|||+++|++|+
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~ 554 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGK 554 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTE
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCE
Confidence 6899999999999999988 88999999998766 555554422 1238999999999874 899999999999
Q ss_pred CCHHHHHHHHHH
Q 006859 607 QDEESIRHALQN 618 (628)
Q Consensus 607 ~~~~~~~~~l~~ 618 (628)
+.+++..+++..
T Consensus 555 i~~~g~~~el~~ 566 (587)
T 3qf4_A 555 VAGFGTHKELLE 566 (587)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 987766665543
No 233
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.98 E-value=0.00034 Score=74.49 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=50.1
Q ss_pred eeeecCCCCCCcHHHHHHH---------HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 006859 534 FQLKDGPRHVPHYGLLLAE---------VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICL 602 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~---------~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l 602 (628)
..+|+|+.++..+|+.+|. ++|+|.+.+|.... +.+.+..... ...++++++|+... ...||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~-~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTM-FEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHH-HTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-HHhCCEEEEE
Confidence 3489999988889998883 77999999987766 5555543211 12267899999654 5779999887
Q ss_pred hc
Q 006859 603 KY 604 (628)
Q Consensus 603 ~~ 604 (628)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 234
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.98 E-value=2.8e-06 Score=94.53 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=65.1
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|+.++|+++++ ++|+|++.+|...+ +.+.+.+.. ...|+++++|+++.+.. |||+++|++|+
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~ 566 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGE 566 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCE
Confidence 5799999999999999988 88999999998766 555554432 12388999999998754 99999999999
Q ss_pred CCHHHHHHHHH
Q 006859 607 QDEESIRHALQ 617 (628)
Q Consensus 607 ~~~~~~~~~l~ 617 (628)
+.++|..+++.
T Consensus 567 i~~~g~~~~l~ 577 (598)
T 3qf4_B 567 IVEMGKHDELI 577 (598)
T ss_dssp EEECSCHHHHH
T ss_pred EEEECCHHHHH
Confidence 98777666653
No 235
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.95 E-value=0.00039 Score=65.67 Aligned_cols=21 Identities=33% Similarity=0.156 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 236
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.94 E-value=0.00032 Score=66.37 Aligned_cols=21 Identities=33% Similarity=0.211 Sum_probs=20.0
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+|||||||||+.+.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 237
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.00042 Score=66.56 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.5
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.+++|+||+||||||+.+.|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 238
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.92 E-value=0.00039 Score=65.89 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+||+||||||+.+.|++
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999999998
No 239
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.91 E-value=0.00043 Score=64.64 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=20.2
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+||||+|||||++.++|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999999
No 240
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=0.00043 Score=63.95 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.+..+.|+||.|+||||+++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999883
No 241
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.86 E-value=0.00051 Score=73.92 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.+..++|.|++||||||++++|..-
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999998863
No 242
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.85 E-value=0.00034 Score=76.36 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|++++|+|+|||||||++|+|++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 789999999999999999999999
No 243
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.84 E-value=0.00055 Score=63.18 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=23.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|.+++|+|++||||||+.+.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999999
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.84 E-value=0.0031 Score=64.17 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.|+++.|.||+|+|||||+..++..+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999998743
No 245
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.84 E-value=2e-06 Score=86.45 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=60.8
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|+.|++.+|++++. ++|+|.+.+|...+ +.+.+..... ...|+++++|+++.+. .||++++|++|+
T Consensus 158 ~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i~~l~~G~ 235 (290)
T 2bbs_A 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKILILHEGS 235 (290)
T ss_dssp CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEEEEEECCe
Confidence 6899999999999999988 88999999998876 4443211111 1238899999999874 699999999999
Q ss_pred CCHHHHHHH
Q 006859 607 QDEESIRHA 615 (628)
Q Consensus 607 ~~~~~~~~~ 615 (628)
+...+..+.
T Consensus 236 i~~~g~~~~ 244 (290)
T 2bbs_A 236 SYFYGTFSE 244 (290)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 865444333
No 246
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.83 E-value=8.7e-07 Score=86.03 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=61.6
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcc
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRI-TKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYS 605 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l-~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g 605 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +.+.+ .... ...|+++++|+++.+. .||++++|++|
T Consensus 129 ~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G 205 (229)
T 2pze_A 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEG 205 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHHH-hCCEEEEEECC
Confidence 6899999999999999988 88999999998876 44432 2211 1238899999999875 59999999999
Q ss_pred CCCHHHHHHHH
Q 006859 606 NQDEESIRHAL 616 (628)
Q Consensus 606 ~~~~~~~~~~l 616 (628)
++...+..+.+
T Consensus 206 ~i~~~g~~~~~ 216 (229)
T 2pze_A 206 SSYFYGTFSEL 216 (229)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 98655444443
No 247
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.83 E-value=0.00053 Score=64.40 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=20.1
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+||||+|||||++.++|
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999999
No 248
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.82 E-value=0.00057 Score=64.66 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.0
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.+|+|||||||||++.+|.-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 249
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.82 E-value=0.0026 Score=66.11 Aligned_cols=123 Identities=13% Similarity=0.088 Sum_probs=59.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHh----cCC---cccCCC--CCchHHHHHHhhcCCccccccCcCchHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQ----IGC---YVPAHF--STIRVVDRIFTRMGTVDNLESNSSTFMTEMKE 451 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~----~g~---~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~ 451 (628)
.+..+.|+||.|+||||+++.++....-.. .++ ++.+.. ........++..++.... ..+. ....-...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~ 120 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP-FTGL-SVGEVYER 120 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC-SSCC-CHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC-CCCC-CHHHHHHH
Confidence 467899999999999999999988432210 021 122221 112344555555543210 0010 11111223
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHH----hCCcEEEEEcCChh
Q 006859 452 TAFVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLL----SLKAYTIFASHMEN 505 (628)
Q Consensus 452 ~~~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~----~~~~~vi~~tH~~~ 505 (628)
+...+.....+.++++||+..-............+.+... ..+..++.+|+...
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 3333333344679999999321110001222223333222 23568888888753
No 250
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.79 E-value=0.00037 Score=76.34 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|+.++|+||||+||||++|+|++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999999993
No 251
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.79 E-value=0.0014 Score=68.11 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=42.0
Q ss_pred cCchHHHHHHHHHH------HHh-CCC-CcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 442 SSTFMTEMKETAFV------MQN-VSE-RSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 442 ~s~~s~~~~~~~~i------~~~-~~~-~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
++.+|+|+++...+ ++. ... |+++++|||+.|.|+.....+... +..+ ..+.+++++||+.++.
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~-l~~~-~~~~~vi~~th~~~~~ 349 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI-FRKV-KSIPQMIIITHHRELE 349 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHH-HHHC-CSCSEEEEEESCGGGG
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHH-HHHh-ccCCeEEEEEChHHHH
Confidence 34578888875532 222 267 999999999999987654443332 2222 2346899999997643
No 252
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.79 E-value=2.6e-06 Score=94.50 Aligned_cols=82 Identities=7% Similarity=0.159 Sum_probs=65.6
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|+.++|+++++ ++|+|++.+|...+ +.+.+.+... ..|+++++|+++.+. .|||+++|++|+
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~ 552 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTIT-HADKIVVIENGH 552 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTT-TCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-cCCEEEEEECCE
Confidence 5799999999999999998 88999999998765 4444443211 238899999999875 599999999999
Q ss_pred CCHHHHHHHHHH
Q 006859 607 QDEESIRHALQN 618 (628)
Q Consensus 607 ~~~~~~~~~l~~ 618 (628)
+.+++..+++..
T Consensus 553 i~~~g~~~el~~ 564 (578)
T 4a82_A 553 IVETGTHRELIA 564 (578)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 988777776544
No 253
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.77 E-value=0.00026 Score=72.83 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=31.3
Q ss_pred cCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHHH
Q 006859 358 GGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
++...++.++++... .+.+++|+|+||+||||+++.+++.
T Consensus 40 ~~~~~~~~~l~~~~~--------~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 40 ALSTQLLDAIMPYCG--------NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHHHHGGGCS--------CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHhCCcccC--------CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 344445555555555 7899999999999999999999984
No 254
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.0011 Score=61.56 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+|++||||||+.+.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999998
No 255
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.0049 Score=59.54 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.|+.+++.||+||||||++..+..-
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 6889999999999999999877653
No 256
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.70 E-value=0.013 Score=58.87 Aligned_cols=25 Identities=40% Similarity=0.512 Sum_probs=22.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+|..+.|.||.|+|||||...++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 6788899999999999999999863
No 257
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.00058 Score=70.74 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.9
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.-.++|+|+||+|||||++.+++
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999988
No 258
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.66 E-value=0.00062 Score=62.67 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..+.|+||.|+||||+++.++.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999988
No 259
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.65 E-value=0.00093 Score=69.62 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=23.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|..++|+|+||+|||||+++|+|
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 788999999999999999999999
No 260
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.65 E-value=0.00083 Score=63.48 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|.+++|+||+||||||+.+.|+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999987
No 261
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.61 E-value=4.5e-06 Score=92.89 Aligned_cols=78 Identities=8% Similarity=0.075 Sum_probs=61.8
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|+.++|+++++ ++|||++.+|...+ +.+.+.+... ..|+++++|+++.+. .|||+++|++|+
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~ 558 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIK-NANMVAVLDQGK 558 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHH-HSSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHH-cCCEEEEEECCE
Confidence 6899999999999999998 88999999998776 5555544322 238899999999875 599999999998
Q ss_pred CCHHHHHH
Q 006859 607 QDEESIRH 614 (628)
Q Consensus 607 ~~~~~~~~ 614 (628)
+.+++..+
T Consensus 559 i~~~g~~~ 566 (595)
T 2yl4_A 559 ITEYGKHE 566 (595)
T ss_dssp EEEEECSC
T ss_pred EEEECCHH
Confidence 76544433
No 262
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.59 E-value=0.007 Score=60.62 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.|.||.|+|||++.+.|+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678889999999999999998
No 263
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0036 Score=62.27 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..+.|.||.|+||||+++.++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 456699999999999999999988
No 264
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.57 E-value=0.00043 Score=70.09 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.6
Q ss_pred CceEEEEecCCCChhHHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
+..+.|.||.|+|||+|++.|+.-
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999983
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.54 E-value=0.028 Score=57.94 Aligned_cols=120 Identities=15% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHh-cCCcccCCCCCchHHHHHHhhcCCccc-c-ccCcCchHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQ-IGCYVPAHFSTIRVVDRIFTRMGTVDN-L-ESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~-~g~~v~~~~~~i~~~~~~~~~~~~~~~-~-~~~~s~~s~~~~~~~~i~~ 457 (628)
.|+++.|.||.|+|||||...++....... -..|+..+...-.. ...++|.... + .....+.. .......-+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~---~a~~~g~d~~~l~i~~~~~~e-~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV---YARALGVNTDELLVSQPDNGE-QALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH---HHHHTTCCGGGCEEECCSSHH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH---HHHHcCCCHHHceeecCCcHH-HHHHHHHHHH
Confidence 899999999999999999998877443221 11244443322222 2344554311 1 11112221 1111111111
Q ss_pred hCCCCcEEEEeCCCCCCC-h-HH----------HHHHHHHHHHHH----HhCCcEEEEEcCCh
Q 006859 458 NVSERSLIVMDELGRATS-S-SD----------GFAIAWSCCEHL----LSLKAYTIFASHME 504 (628)
Q Consensus 458 ~~~~~~l~llDE~~~gt~-~-~~----------~~~~~~~~~~~l----~~~~~~vi~~tH~~ 504 (628)
....++++++|.++.-.. . .+ ........+..| .+.+++++++.|-.
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 225689999999976431 1 11 001112233333 45689999888863
No 266
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.53 E-value=0.00063 Score=75.69 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=33.8
Q ss_pred EcCccCcccccccceeecccccccCCceEEEEecCCCChhHHHHHHHH
Q 006859 357 DGGRHPILESIHNDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 357 ~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
-+|...+++.++..+. .|+.++|+||||+||||+++.|++
T Consensus 43 i~G~~~~l~~l~~~i~--------~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAAN--------QKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CCSCHHHHHHHHHHHH--------TTCCEEEECCTTSSHHHHHHHHHH
T ss_pred EECchhhHhhcccccc--------CCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3566666766666666 889999999999999999999999
No 267
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.52 E-value=5.1e-06 Score=92.16 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=64.9
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
.+||+|++|+.++|+++++ ++|||++.+|...+ +.+.+.+..+ ..|+++++|+++.+. .|||+++|++|+
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~ 555 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVEDGI 555 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHHH-hCCEEEEEECCE
Confidence 6899999999999999998 88999999998776 5555544321 238899999999775 699999999999
Q ss_pred CCHHHHHHHHH
Q 006859 607 QDEESIRHALQ 617 (628)
Q Consensus 607 ~~~~~~~~~l~ 617 (628)
+.+.+..+++.
T Consensus 556 i~~~g~~~~l~ 566 (582)
T 3b60_A 556 IVERGTHSELL 566 (582)
T ss_dssp EEEEECHHHHH
T ss_pred EEEecCHHHHH
Confidence 87766666543
No 268
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.52 E-value=0.0072 Score=57.79 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.|+||.|+||||+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 269
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.51 E-value=0.0012 Score=62.15 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.4
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+++|+|++||||||+.+.|+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999988
No 270
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.47 E-value=0.0011 Score=68.45 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.+.+++|+|++|||||||++.++|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999993
No 271
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.42 E-value=0.0035 Score=63.90 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=48.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcC-CcccCCCCCchHHHHHHhhc-CCc-cccccCcCchHHH-HHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIG-CYVPAHFSTIRVVDRIFTRM-GTV-DNLESNSSTFMTE-MKETAFVM 456 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g-~~v~~~~~~i~~~~~~~~~~-~~~-~~~~~~~s~~s~~-~~~~~~i~ 456 (628)
+|+.++|.|++|+|||||+..++......... +|+..+...-.+..+++... ++. +.+.. +.++.+ ..++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~--g~Ls~~e~~~l~~a~ 122 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLES--GRLDDDQWENLAKCF 122 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHH--TCCCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhc--CCCCHHHHHHHHHHH
Confidence 89999999999999999999998855442111 12222222222333333221 111 11111 123333 33444444
Q ss_pred HhCCCCcEEEEeCCC
Q 006859 457 QNVSERSLIVMDELG 471 (628)
Q Consensus 457 ~~~~~~~l~llDE~~ 471 (628)
..+....+.+.|+|+
T Consensus 123 ~~l~~~~l~I~d~~~ 137 (338)
T 4a1f_A 123 DHLSQKKLFFYDKSY 137 (338)
T ss_dssp HHHHHSCEEEECCTT
T ss_pred HHHhcCCeEEeCCCC
Confidence 444556788888874
No 272
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.40 E-value=0.0054 Score=58.63 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=57.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcC-Ccc-cCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIG-CYV-PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g-~~v-~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
+|.++.++||-|+||||++..++.-...+..- .++ |..... . ...+.+++|+.-... ..... .++...+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~srlG~~~~~~-~~~~~----~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQSRTGTSLPSV-EVESA----PEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCCCCCCSSCCE-EESST----HHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHHhcCCCcccc-ccCCH----HHHHHHHHH
Confidence 68999999999999999887766533222111 122 222111 1 113345555431110 11111 122222222
Q ss_pred -C--CCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcC
Q 006859 459 -V--SERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASH 502 (628)
Q Consensus 459 -~--~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH 502 (628)
. ..++++++||.-. .+. + .. ..+..+.+.+..++++-|
T Consensus 84 ~~~~~~~dvViIDEaQ~-l~~-~---~v-e~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQF-FDD-R---IC-EVANILAENGFVVIISGL 124 (223)
T ss_dssp TTSCTTCCEEEECSGGG-SCT-H---HH-HHHHHHHHTTCEEEEECC
T ss_pred HhhCCCCCEEEEecCcc-CcH-H---HH-HHHHHHHhCCCeEEEEec
Confidence 2 3589999999942 111 1 12 234555666899999999
No 273
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.0089 Score=62.88 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
+-+.+.||.|+|||++.|.+|+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999998
No 274
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.29 E-value=0.0017 Score=60.05 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+||+||||||+.+.++.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999999985
No 275
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.28 E-value=0.0011 Score=72.30 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=52.0
Q ss_pred Eeeee-ecCCCCCCcHHHHHHH-------HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 006859 532 FKFQL-KDGPRHVPHYGLLLAE-------VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLIC 601 (628)
Q Consensus 532 ~~~~l-~~G~~~~~~~a~~la~-------~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 601 (628)
+..+| |+|+.+++.+|++++. ++|+|+..+|.... +.+.|.+... ..+++++||+++.+ ..|||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~-~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIA-ARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHH-HHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-HhCCEEEE
Confidence 34566 9999999999998876 36899988886554 4444433221 23889999999876 46999999
Q ss_pred hhcc
Q 006859 602 LKYS 605 (628)
Q Consensus 602 l~~g 605 (628)
|.++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9554
No 276
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.26 E-value=0.0023 Score=59.30 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=22.6
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+|+.||||||+.+.++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999999987
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.25 E-value=0.018 Score=58.24 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=24.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
+|++++|.|+.|+|||||+..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999998754
No 278
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.01 Score=61.64 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
-+.+.||.|+|||++.|.+|+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHH
Confidence 389999999999999999999
No 279
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.23 E-value=0.002 Score=58.91 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|..++|+|++|+|||||++.+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999988
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.23 E-value=0.02 Score=60.35 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
++.+++++||+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 281
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.23 E-value=0.0023 Score=61.63 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|.||+||||||+++.|+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999999998
No 282
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.22 E-value=0.0025 Score=61.65 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+|++||||||+.+.|++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999987
No 283
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.015 Score=61.37 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
+-+.+.||.|+|||++.|.||+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4489999999999999999999
No 284
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.20 E-value=0.045 Score=54.76 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=62.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHH---hcCCcccCCCCCchHHHHHHhhcCCcc-ccccCcCchHHHH--HHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILA---QIGCYVPAHFSTIRVVDRIFTRMGTVD-NLESNSSTFMTEM--KETAF 454 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~---~~g~~v~~~~~~i~~~~~~~~~~~~~~-~~~~~~s~~s~~~--~~~~~ 454 (628)
+| ++.|.||.|+|||||+-+++...... ....|+..+...-+. ...++|... .+.-. ...+.+. ..+..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~d~llv~-~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDPERVIHT-PVQSLEQLRIDMVN 102 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCGGGEEEE-ECSBHHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCHHHeEEE-cCCCHHHHHHHHHH
Confidence 78 89999999999999977766543322 112355544332221 356677642 11111 1112222 12222
Q ss_pred HHHhC--CCCcEEEEeCCCCCCC--hHHH-------------HHHHHH---HHHHHHhCCcEEEEEcCChh
Q 006859 455 VMQNV--SERSLIVMDELGRATS--SSDG-------------FAIAWS---CCEHLLSLKAYTIFASHMEN 505 (628)
Q Consensus 455 i~~~~--~~~~l~llDE~~~gt~--~~~~-------------~~~~~~---~~~~l~~~~~~vi~~tH~~~ 505 (628)
.+..+ ..++++++|-+..-.. ..++ ...... +...+.+.+++++++-|-..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 22223 4689999999865431 1111 111111 22334567999999998755
No 285
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.16 E-value=0.0024 Score=66.46 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=47.1
Q ss_pred eeeeecCCCCCCcHHHHHHH------------HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 006859 533 KFQLKDGPRHVPHYGLLLAE------------VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQR 598 (628)
Q Consensus 533 ~~~l~~G~~~~~~~a~~la~------------~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~ 598 (628)
...+|+|+.+++.+|+.+|. ++|+|.+.+|.... +.+.+.+.... .+++++||+.+ +..+||+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI--PQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSC--SEEEEEESCGG-GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccC--CeEEEEEChHH-HHhhCCE
Confidence 35799999887655533222 46888888887665 55555442111 26789999986 5688999
Q ss_pred HHhhhc
Q 006859 599 LICLKY 604 (628)
Q Consensus 599 ~~~l~~ 604 (628)
++++++
T Consensus 355 ~~~l~k 360 (371)
T 3auy_A 355 IINVKK 360 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 988864
No 286
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.15 E-value=0.0028 Score=60.17 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+|++||||||+.+.|+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999998
No 287
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.15 E-value=0.0011 Score=67.94 Aligned_cols=39 Identities=13% Similarity=0.332 Sum_probs=30.6
Q ss_pred cCccCcccccccceeecccccccCCce--EEEEecCCCChhHHHHHHHH
Q 006859 358 GGRHPILESIHNDFIPNNIFISEAANM--VIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~l~~~g~~--~~i~GpNGsGKSTllk~i~g 404 (628)
+|...+++.+...+. .|++ ++++||+|+||||+++.+++
T Consensus 28 ~g~~~~~~~L~~~i~--------~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 28 YGQNEVITTVRKFVD--------EGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CSCHHHHHHHHHHHH--------TTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHh--------cCCCceEEEECCCCCCHHHHHHHHHH
Confidence 455556666555555 6666 99999999999999999999
No 288
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.10 E-value=0.003 Score=57.99 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred ceEEEEecCCCChhHHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.+++|+||+|||||||++.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999999999984
No 289
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.07 E-value=0.0023 Score=57.85 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..++|+|++|+|||||++.+++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999988
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.05 E-value=0.003 Score=57.40 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+||.||||||+.+.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 291
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.01 E-value=0.0035 Score=65.98 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
++++++++||||+||||++..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999993
No 292
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.99 E-value=3.6e-05 Score=80.07 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=58.3
Q ss_pred EeeeeecCCCCCCcHHHHHH------H-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 006859 532 FKFQLKDGPRHVPHYGLLLA------E-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQR 598 (628)
Q Consensus 532 ~~~~l~~G~~~~~~~a~~la------~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~ 598 (628)
+...||+|++|++++|++++ . ++|+|++.+|.... +++.+.+... ...|+++++|+++. ...||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhCCE
Confidence 44689999999999999988 2 67999999987765 4444443221 23388999999998 678999
Q ss_pred HHhhhccCCCH
Q 006859 599 LICLKYSNQDE 609 (628)
Q Consensus 599 ~~~l~~g~~~~ 609 (628)
+++|++|++..
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999998753
No 293
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.97 E-value=0.03 Score=56.15 Aligned_cols=25 Identities=20% Similarity=0.184 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.+..+.|+||.|+||||+.+.++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999883
No 294
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.96 E-value=0.014 Score=60.31 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
....+.|+||.|+||||+.+.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999987
No 295
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.94 E-value=0.026 Score=54.99 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.7
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
...+.|+||.|+||||+.+.++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999988
No 296
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.014 Score=61.45 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
+-+.+.||.|+|||++.+.+|+
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 4489999999999999999999
No 297
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.92 E-value=0.0033 Score=63.12 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.+++++++||||+||||++..+++..
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999843
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.92 E-value=0.0039 Score=57.09 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.5
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.+++|+|+.||||||+.+.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999988
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.90 E-value=0.0036 Score=58.06 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=19.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.++|+||+|||||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998765
No 300
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.87 E-value=0.029 Score=56.94 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
....+.|.||.|+|||++.+.++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 346689999999999999999998
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.85 E-value=0.004 Score=60.98 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+||+||||||+.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999987
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.80 E-value=0.0046 Score=57.21 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=21.4
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
|.+++|+||.||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 303
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.80 E-value=0.0039 Score=57.44 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|++|+|||||++.+++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999987
No 304
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.79 E-value=0.0047 Score=58.76 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=21.1
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.+++|+|++||||||+.+.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 305
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.73 E-value=0.038 Score=59.36 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
.-+.|.||.|+|||++.+.|+.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 4589999999999999999987
No 306
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.73 E-value=0.0026 Score=64.84 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=23.1
Q ss_pred CCce--EEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANM--VIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~--~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.|+. ++|+||+|+||||+.+.|++..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5666 9999999999999999999954
No 307
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.71 E-value=0.0063 Score=64.75 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=20.0
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.|.||.|+||||+.+.|+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999998
No 308
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.70 E-value=0.0041 Score=60.90 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+||+||||||+.+.|+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999988
No 309
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.70 E-value=0.005 Score=56.37 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+||+||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 310
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.70 E-value=0.0038 Score=62.84 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
++.+++|+|++|+|||||++.+.|
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 345899999999999999999998
No 311
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.68 E-value=0.0058 Score=56.67 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.+++|+|+.||||||+.+.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 312
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.68 E-value=0.036 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.-+.|.||.|+|||++.+.|+.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 345689999999999999999887
No 313
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.022 Score=59.40 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
+-+.+.||.|+|||++.+.+|+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHH
Confidence 3489999999999999999999
No 314
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.61 E-value=0.021 Score=58.79 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.7
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..-+.|.||.|+||||+.+.++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999998
No 315
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.60 E-value=0.1 Score=63.67 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=62.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhc-CCcccCCCCCchHHHHHHhhcCCcc-cc-ccCcCchHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQI-GCYVPAHFSTIRVVDRIFTRMGTVD-NL-ESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~-g~~v~~~~~~i~~~~~~~~~~~~~~-~~-~~~~s~~s~~~~~~~~i~~ 457 (628)
+|+.+.|.||+|+|||||+..++.......- ..|+..+...-... ..++|..- .+ -....+...-..++..+.+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~---A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHH---HHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 8999999999999999999999885543211 11443333222221 34444321 11 1111122111111222222
Q ss_pred hCCCCcEEEEeCCCCCCChH-------------HHHHHHH---HHHHHHHhCCcEEEEEcCC
Q 006859 458 NVSERSLIVMDELGRATSSS-------------DGFAIAW---SCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 458 ~~~~~~l~llDE~~~gt~~~-------------~~~~~~~---~~~~~l~~~~~~vi~~tH~ 503 (628)
-..++++++|++..-.... ....+.. .+.....+.+++++++.|-
T Consensus 808 -~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 808 -SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp -HTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred -ccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 2578999999997544210 1111221 2222345678999999884
No 316
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.59 E-value=0.0088 Score=61.41 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=24.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVI 407 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~ 407 (628)
+|+.++|+||+|+|||||++.|+..+-
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 899999999999999999999998543
No 317
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.59 E-value=0.0081 Score=69.56 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.2
Q ss_pred CceEEEEecCCCChhHHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
...++|+||+|+||||+++.++..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 345899999999999999999984
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.57 E-value=0.007 Score=56.62 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
...+++|+|+.||||||+.+.++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999998
No 319
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.57 E-value=1.3e-05 Score=76.62 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=54.3
Q ss_pred eeeecCCCCCCcHHHHHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 006859 534 FQLKDGPRHVPHYGLLLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQRLICLKYSN 606 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~l~~g~ 606 (628)
..||+|++|++.+|++++. ++|+|++.+|...+ +.+.+.+... ...|++++||+++.+..+||+++.+ .|+
T Consensus 132 ~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~v~~~-~~~ 209 (214)
T 1sgw_A 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIISSREELSYCDVNENLHKY-STK 209 (214)
T ss_dssp GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSEEEEEESSCCTTSSEEEEGGGG-BC-
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEe-CCc
Confidence 7899999999888888887 88999999987655 4444443221 1338899999999999999998765 555
Q ss_pred CC
Q 006859 607 QD 608 (628)
Q Consensus 607 ~~ 608 (628)
++
T Consensus 210 ~~ 211 (214)
T 1sgw_A 210 ID 211 (214)
T ss_dssp --
T ss_pred cc
Confidence 54
No 320
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.55 E-value=0.0064 Score=58.51 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.0
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.-+++|+||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 321
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.55 E-value=0.0064 Score=55.87 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+|+.||||||+.+.++-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 322
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.55 E-value=0.0062 Score=60.83 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+||+||||||+.+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 323
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.55 E-value=0.0059 Score=55.42 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=18.4
Q ss_pred ceEEEEecCCCChhHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQV 402 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i 402 (628)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999988
No 324
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.54 E-value=0.04 Score=58.53 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVIL 408 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~ 408 (628)
+|+.+.|.|++|+|||||+..++.....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999986544
No 325
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.52 E-value=0.026 Score=59.06 Aligned_cols=88 Identities=18% Similarity=0.145 Sum_probs=45.9
Q ss_pred CCceEEE--EecCCCChhHHHHHHHHHHHHH------hc-CCcccCC--CCCchHHHHHHhhcCCccccccCcCchHHHH
Q 006859 381 AANMVIV--TGPNMSGKSTYLQQVCLIVILA------QI-GCYVPAH--FSTIRVVDRIFTRMGTVDNLESNSSTFMTEM 449 (628)
Q Consensus 381 ~g~~~~i--~GpNGsGKSTllk~i~g~~~~~------~~-g~~v~~~--~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~ 449 (628)
.+..+.| +||.|+||||+++.++.-.--. .. ..++.+. .....+...++..++.... ..+. ....-.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~ 126 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQ-VRGA-PALDIL 126 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCC-CTTC-CHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCC-CHHHHH
Confidence 3457777 9999999999999998743221 11 1133321 1222345555655553211 0011 111112
Q ss_pred HHHHHHHHhCCCCcEEEEeCC
Q 006859 450 KETAFVMQNVSERSLIVMDEL 470 (628)
Q Consensus 450 ~~~~~i~~~~~~~~l~llDE~ 470 (628)
..+...+.....+-++++||+
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~ 147 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEF 147 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEEST
T ss_pred HHHHHHHHhcCCeEEEEEeCH
Confidence 233333333345779999998
No 326
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.49 E-value=0.0067 Score=55.47 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+++|+||+||||||+.+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 327
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.48 E-value=0.0046 Score=56.99 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|++|+|||||++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999988
No 328
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.47 E-value=0.0077 Score=55.85 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.-.++|+|++|+|||||++.+.+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999987
No 329
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.46 E-value=0.042 Score=55.91 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.|+||.|+||||+.+.++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999999977
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.42 E-value=0.0075 Score=56.39 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999988
No 331
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.043 Score=57.84 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
+-+.+.||.|+|||++.|.||+
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHh
Confidence 4489999999999999999999
No 332
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.41 E-value=0.0095 Score=68.33 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.++.++|+||+|+||||+.|.|++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999994
No 333
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.00012 Score=78.18 Aligned_cols=88 Identities=8% Similarity=-0.113 Sum_probs=64.7
Q ss_pred eeeecCCCCCCcHHHH--HHH---------HCCC-CHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH------HHHHH
Q 006859 534 FQLKDGPRHVPHYGLL--LAE---------VAGL-PSTVIETARSITSRITKKEVKRMEINCLQYKQIQ------MLYHA 595 (628)
Q Consensus 534 ~~l~~G~~~~~~~a~~--la~---------~~g~-p~~~l~~a~~~~~~l~~~~~~~~~~~~~~~h~~~------~~~~~ 595 (628)
..|++|++|++++|++ ++. ++|+ |...+|...+.+.++.+..+. ++++++|+.+ ++..+
T Consensus 234 ~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~---tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 234 KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNV---NIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTC---CEEEEECCSSCTHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCC---CEEEEEccCchhhhHHHHHHh
Confidence 6899999998888887 764 5799 899888774445444443333 7888999877 88899
Q ss_pred HHH-----HHhhh-ccCCCHHHHHHHHHHHHHHHhc
Q 006859 596 AQR-----LICLK-YSNQDEESIRHALQNLKESFID 625 (628)
Q Consensus 596 ~~~-----~~~l~-~g~~~~~~~~~~l~~~~~~~~~ 625 (628)
||| +++|+ +|++. ++..+.+..+++.+.+
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~ 345 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIR 345 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHH
Confidence 999 99998 99988 6655655555444433
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.34 E-value=0.0093 Score=55.40 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
++.+++|+|+.||||||+.+.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999986
No 335
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.33 E-value=0.0089 Score=55.96 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+|+.||||||+.+.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 477899999999999999999987
No 336
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.25 E-value=0.0051 Score=58.14 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|.||+||||||+++.|+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 337
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.24 E-value=0.01 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=22.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+|+.||||||+.+.++-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999987
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.24 E-value=0.01 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+++|+|++||||||++..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 339
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.24 E-value=0.019 Score=58.28 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=21.0
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
...+.|.||.|+|||++.+.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45689999999999999999988
No 340
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.24 E-value=0.0098 Score=54.79 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=21.2
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+..++|+||.||||||+.+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 341
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.22 E-value=0.13 Score=54.39 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=25.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVIL 408 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~ 408 (628)
+|+.++|.|+.|+|||||+-.++.....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 8999999999999999999999885544
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.0093 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.8
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.+++|+|+.||||||+.+.++-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 343
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.20 E-value=0.0099 Score=55.79 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=20.2
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+|++||||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999988
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.19 E-value=0.0098 Score=55.97 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999987
No 345
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.12 E-value=0.0096 Score=56.67 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCce-EEEEecCCCChhHHHHHHHHHHHHHhcCCcc---cCC-CCCchHHHHHHhhcCCccc--cccCcCchHHHHHHHH
Q 006859 381 AANM-VIVTGPNMSGKSTYLQQVCLIVILAQIGCYV---PAH-FSTIRVVDRIFTRMGTVDN--LESNSSTFMTEMKETA 453 (628)
Q Consensus 381 ~g~~-~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v---~~~-~~~i~~~~~~~~~~~~~~~--~~~~~s~~s~~~~~~~ 453 (628)
.|+. +.+.|+-|+||||+.-.++... ++-|.-| ..+ .+...... .+..+..... ....-..+. + ..+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l--~~~G~~V~v~d~D~q~~~~~~a-l~~gl~~~~~~~~~~~~~~~~-e-~~l~ 78 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ--LRQGVRVMAGVVETHGRAETEA-LLNGLPQQPLLRTEYRGMTLE-E-MDLD 78 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCCTTCHHHHH-HHTTSCBCCCEEEEETTEEEE-E-CCHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH--HHCCCCEEEEEeCCCCChhHHH-HhcCccccCcceeecCCcccc-c-ccHH
Confidence 4554 7889999999999977776633 2334211 111 23322221 1221111000 000000000 0 0112
Q ss_pred HHHHhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhHH
Q 006859 454 FVMQNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENLS 507 (628)
Q Consensus 454 ~i~~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l~ 507 (628)
.++. ..|+++++||++.-..+.......+..+..+...+..++.++|-.++.
T Consensus 79 ~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~e 130 (228)
T 2r8r_A 79 ALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLE 130 (228)
T ss_dssp HHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBG
T ss_pred HHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccc
Confidence 2222 368999999998643332222334444455666788888888865443
No 346
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.12 E-value=0.0087 Score=54.96 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=17.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.+++|+|+.||||||+.+.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999975
No 347
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.12 E-value=0.34 Score=49.17 Aligned_cols=22 Identities=5% Similarity=0.144 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.+.||.|.||||+.+.++.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHH
Confidence 4689999999999999999988
No 348
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.10 E-value=0.012 Score=55.48 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|+|+.||||||+.+.++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999986
No 349
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.06 E-value=0.037 Score=57.74 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..+.|.||.|+|||++.+.|+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346699999999999999999977
No 350
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.00 E-value=0.012 Score=54.38 Aligned_cols=21 Identities=48% Similarity=0.385 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+||.||||||+.+.|+-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 351
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.98 E-value=0.064 Score=55.18 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.|+||.|+||||+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.98 E-value=0.012 Score=54.69 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 353
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.94 E-value=0.011 Score=57.17 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|++|+|||||++.|.|
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999998
No 354
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.91 E-value=0.014 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.+++|+|+.||||||+.+.++-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 355
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.90 E-value=0.011 Score=58.34 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..++|+|++|+|||||++.++|
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999988
No 356
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.88 E-value=0.014 Score=60.34 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|++|||||||++.+.|
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 699999999999999999999
No 357
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.86 E-value=0.033 Score=59.17 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.1
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
...+.|.||.|+|||++.+.++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999998
No 358
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.84 E-value=0.11 Score=56.22 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
+|+.+.|.|+.|+|||||+-.++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH
Confidence 89999999999999999999888743
No 359
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.84 E-value=0.0097 Score=59.46 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=18.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.+++|+||.||||||+.+.++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 360
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.79 E-value=0.0083 Score=56.06 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.9
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999976
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.75 E-value=0.016 Score=55.09 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+|+.||||||+.+.|+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 362
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.73 E-value=0.012 Score=60.92 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=20.0
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+|++|+|||||++.++|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 489999999999999999998
No 363
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.69 E-value=0.11 Score=64.43 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=73.1
Q ss_pred CccCcccccc--cceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHH-hcCCcccCCCCCchHHHHHHhhcCCc
Q 006859 359 GRHPILESIH--NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILA-QIGCYVPAHFSTIRVVDRIFTRMGTV 435 (628)
Q Consensus 359 ~~~~~l~~~~--~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~-~~g~~v~~~~~~i~~~~~~~~~~~~~ 435 (628)
-+.|.|+.+. .-+. +|+.+.|+||.|+|||||..+++--.... .-+.|+..+...-.+. ...+|.+
T Consensus 1064 TGi~~Ld~~lg~ggi~--------~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~---a~~~G~d 1132 (2050)
T 3cmu_A 1064 TGSLSLDIALGAGGLP--------MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVD 1132 (2050)
T ss_dssp CSCHHHHHHHSSSSEE--------TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCC
T ss_pred CCcHHHHHHhccCCcC--------CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHH---HHHcCCC
Confidence 3455566643 3466 89999999999999999999988644322 2333555554433333 2333321
Q ss_pred --cccccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHHH----------------HHHHHHHHHHHhCCcEE
Q 006859 436 --DNLESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDGF----------------AIAWSCCEHLLSLKAYT 497 (628)
Q Consensus 436 --~~~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~~----------------~~~~~~~~~l~~~~~~v 497 (628)
+.....+ .......++...+.....++++++|+++.-....+.. .....+...+.+.++++
T Consensus 1133 l~~l~~~~p-d~~e~~~~i~~~l~~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~sti 1211 (2050)
T 3cmu_A 1133 IDNLLCSQP-DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLL 1211 (2050)
T ss_dssp TTTCEEECC-SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hhHheeecC-cchHHHHHHHHHHHHhCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 1111111 1222223344444445779999999986432211111 11223445555678888
Q ss_pred EEEcCC
Q 006859 498 IFASHM 503 (628)
Q Consensus 498 i~~tH~ 503 (628)
+++...
T Consensus 1212 I~tN~~ 1217 (2050)
T 3cmu_A 1212 IFINQI 1217 (2050)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 887554
No 364
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.68 E-value=0.23 Score=60.72 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=69.7
Q ss_pred cCccccc-c-cceeecccccccCCceEEEEecCCCChhHHHHHHHHHHHHHhc-CCcccCCCCCchHHHHHHhhcCCcc-
Q 006859 361 HPILESI-H-NDFIPNNIFISEAANMVIVTGPNMSGKSTYLQQVCLIVILAQI-GCYVPAHFSTIRVVDRIFTRMGTVD- 436 (628)
Q Consensus 361 ~~~l~~~-~-~~~~~~~~~l~~~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~-g~~v~~~~~~i~~~~~~~~~~~~~~- 436 (628)
.+.|+.+ + .-+. .|+++.|+||+|+|||+|.-+++-.....-- ..|+..+...-... ..+++..-
T Consensus 19 i~~LD~lL~~GGi~--------~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~---~~~lg~dl~ 87 (1706)
T 3cmw_A 19 SLSLDIALGAGGLP--------MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID 87 (1706)
T ss_dssp CHHHHHHTSSSSEE--------TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGG
T ss_pred cHHHHHHhhcCCcC--------CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHH---HHhhccCcc
Confidence 4455553 3 3567 8999999999999999999998865443321 22444333221121 33443221
Q ss_pred c-cccCcCchHHHHHHHHHHHHhCCCCcEEEEeCCCCCCChHHH----------------HHHHHHHHHHHHhCCcEEEE
Q 006859 437 N-LESNSSTFMTEMKETAFVMQNVSERSLIVMDELGRATSSSDG----------------FAIAWSCCEHLLSLKAYTIF 499 (628)
Q Consensus 437 ~-~~~~~s~~s~~~~~~~~i~~~~~~~~l~llDE~~~gt~~~~~----------------~~~~~~~~~~l~~~~~~vi~ 499 (628)
. ...... ......++...+.....++++++|+++.-...... ......+...+.+.++++++
T Consensus 88 ~i~i~~p~-t~e~l~~ll~~L~~~~~~~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~tVIv 166 (1706)
T 3cmw_A 88 NLLCSQPD-TGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF 166 (1706)
T ss_dssp GCEEECCS-SHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred ceeeeccC-cHHHHHHHHHHHHhccCCCEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 0 001111 12222233222222257899999999765443211 11223344445567888887
Q ss_pred EcCC
Q 006859 500 ASHM 503 (628)
Q Consensus 500 ~tH~ 503 (628)
+.|-
T Consensus 167 TNqv 170 (1706)
T 3cmw_A 167 INQI 170 (1706)
T ss_dssp EECE
T ss_pred Eeec
Confidence 7664
No 365
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.67 E-value=0.016 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+++|+|+.||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.66 E-value=0.016 Score=54.89 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.2
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+||.||||||+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.65 E-value=0.017 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.8
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+++|+|+.||||||+.+.++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 368
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.65 E-value=0.015 Score=52.67 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+++|+|+.||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.64 E-value=0.018 Score=55.16 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.+++|+||.||||||+.+.|+-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 370
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.61 E-value=0.014 Score=62.13 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+||+|||||++.++|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 3699999999999999999998
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.59 E-value=0.018 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+||.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999987
No 372
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.57 E-value=0.25 Score=47.34 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
+|+++.|.|+.|+|||||+-.++-..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998877543
No 373
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.56 E-value=0.075 Score=50.58 Aligned_cols=106 Identities=22% Similarity=0.189 Sum_probs=55.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcc--cCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV--PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v--~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
.|.+..++||=||||||.+-..+.-...+..-+++ |....... +.+.++.|..-... +..... + +...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~a~-~i~~~~-d------i~~~ 87 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEAL-PACLLR-D------VAQE 87 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEE-EESSGG-G------GHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch--HHHHhhcCCeeEEE-ecCCHH-H------HHHH
Confidence 58999999999999998765554433322222122 33222222 45666666532111 111111 1 1122
Q ss_pred CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 459 VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 459 ~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
+...+++++||.-.-++ ...+.+.+.+.|..|+++-++
T Consensus 88 ~~~~dvViIDEaQF~~~-------v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD-------IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp HTTCSEEEESSGGGCTT-------HHHHHHHHHHTTCEEEEECCS
T ss_pred hccCCEEEEEchhhhhh-------HHHHHHHHHhCCCEEEEEecc
Confidence 25679999999844332 344566667789999999988
No 374
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.54 E-value=0.087 Score=49.58 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=52.8
Q ss_pred CCceEEEEecCCCChhH-HHHHHHHHHHHHhcCCcc--cCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKST-YLQQVCLIVILAQIGCYV--PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKST-llk~i~g~~~~~~~g~~v--~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
.|.+.+|+||-|||||| |++.+-... .+..-+++ |+..... -.+.+.++.|..-.... .... ..+..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D~R~-~~~~I~Sr~G~~~~a~~-v~~~-------~di~~ 96 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAIDDRY-HKEKVVSHNGNAIEAIN-ISKA-------SEIMT 96 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC------------CBTTBCCEEEE-ESSG-------GGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccCCcc-hhhhHHHhcCCceeeEE-eCCH-------HHHHH
Confidence 68999999999999999 777764422 22221122 2221111 12346667665322110 1110 00111
Q ss_pred h-CCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 458 N-VSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 458 ~-~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
. ..+.+.+++||.=.-++ .+.+ .+..+...|..|+++-=+
T Consensus 97 ~i~~~~dvV~IDEaQFf~~-----~~v~-~l~~la~~gi~Vi~~GLd 137 (219)
T 3e2i_A 97 HDLTNVDVIGIDEVQFFDD-----EIVS-IVEKLSADGHRVIVAGLD 137 (219)
T ss_dssp SCCTTCSEEEECCGGGSCT-----HHHH-HHHHHHHTTCEEEEEEES
T ss_pred HHhcCCCEEEEechhcCCH-----HHHH-HHHHHHHCCCEEEEeecc
Confidence 1 25678999999733222 1122 344455678888887544
No 375
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.53 E-value=0.019 Score=53.67 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
...+++|+|+.||||||+.+.++-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999986
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.52 E-value=0.018 Score=53.23 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.50 E-value=0.018 Score=54.49 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=19.2
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+||.||||||+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 378
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.48 E-value=0.26 Score=61.03 Aligned_cols=87 Identities=20% Similarity=0.228 Sum_probs=46.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHh-cCCcccCCCCCchHHHHHHhhcCCc--cccccCcCchHHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQ-IGCYVPAHFSTIRVVDRIFTRMGTV--DNLESNSSTFMTEMKETAFVMQ 457 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~-~g~~v~~~~~~i~~~~~~~~~~~~~--~~~~~~~s~~s~~~~~~~~i~~ 457 (628)
+|+.+.|.||.|+|||||...++.-+...- -..|+.++...-+.. ...+|.+ ...-..+.+.......+...++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 899999999999999999999876333210 111444443322222 3444522 1111111111111111222222
Q ss_pred hCCCCcEEEEeCCC
Q 006859 458 NVSERSLIVMDELG 471 (628)
Q Consensus 458 ~~~~~~l~llDE~~ 471 (628)
. ..++++++||+.
T Consensus 1503 ~-~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1503 S-GAVDVIVVDSVA 1515 (2050)
T ss_dssp H-TCCSEEEESCGG
T ss_pred c-CCCCEEEEcChh
Confidence 2 579999999994
No 379
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.02 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.+.+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999998
No 380
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.45 E-value=0.019 Score=51.78 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 381
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.45 E-value=0.019 Score=56.25 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.+++|+|+.||||||+.+.++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 382
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.40 E-value=0.023 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.+++|+|+.||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.39 E-value=0.02 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.176 Sum_probs=20.9
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.-+++|+|+.||||||+.+.++-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 384
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.39 E-value=0.016 Score=60.12 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.+..++|+|+||+|||||++.++|.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5678999999999999999999984
No 385
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.20 E-value=0.093 Score=56.89 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
...+.|.||.|+||||+++.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 386
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.19 E-value=0.11 Score=58.91 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
+-+.+.||.|+|||++.|.++.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999998
No 387
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.18 E-value=0.025 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
++++|+|+.||||||+.+.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 388
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.14 E-value=0.024 Score=54.14 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+||.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 389
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.12 E-value=0.027 Score=49.93 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++++|+.|+|||||++.+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999988
No 390
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.10 E-value=0.024 Score=55.17 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+++|+|+.||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998877
No 391
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.09 E-value=0.028 Score=56.53 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..+.|+||.|+|||++.+.|+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHH
Confidence 345689999999999999999987
No 392
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.07 E-value=0.029 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999987
No 393
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.05 E-value=0.029 Score=50.14 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 394
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.04 E-value=0.028 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.6
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
....++|+|+.|+|||||++.+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999987
No 395
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.02 E-value=0.026 Score=58.93 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=22.6
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.+..++|+||+||||||+++.+++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35568999999999999999999855
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.99 E-value=0.026 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.228 Sum_probs=20.7
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+++|+|+.||||||+.+.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 397
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.99 E-value=0.029 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.141 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999986
No 398
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.92 E-value=0.047 Score=55.19 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.6
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+.+.||.|+||||+.+.++.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4678888899999999999987
No 399
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.87 E-value=0.024 Score=56.05 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|++|+|||||++.++|
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999998
No 400
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.85 E-value=0.02 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.6
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999887
No 401
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.84 E-value=0.018 Score=59.52 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.8
Q ss_pred EEEEecCCCChhHHHHHHHH
Q 006859 385 VIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 385 ~~i~GpNGsGKSTllk~i~g 404 (628)
++|+|++|+|||||++.|.+
T Consensus 40 I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHhC
Confidence 69999999999999999876
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.83 E-value=0.034 Score=49.72 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999999988
No 403
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.83 E-value=0.033 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999988
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.83 E-value=0.031 Score=52.83 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+||.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 405
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.80 E-value=0.034 Score=49.45 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999887
No 406
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.78 E-value=0.035 Score=49.46 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++++|+.|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999987
No 407
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.75 E-value=0.052 Score=54.60 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.+.|.||.|+||||+.+.++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 489999999999999999988
No 408
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.75 E-value=0.035 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 409
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.74 E-value=0.035 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 410
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.73 E-value=0.036 Score=49.56 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 411
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.69 E-value=0.023 Score=58.05 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEEecCCCChhHHHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
.+.|.||+|+||||+++.++...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999954
No 412
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.63 E-value=0.036 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|.||.||||||+++.++-
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999999987
No 413
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.62 E-value=0.041 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+|.+++|+||.|+||||++-.++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999855544
No 414
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.62 E-value=0.032 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.8
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.-.++|+|+.|+|||||++.+.+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 415
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.61 E-value=0.038 Score=49.91 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 416
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.57 E-value=0.04 Score=49.13 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.56 E-value=0.039 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.+++.|+||.||||+|..+.|+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999987
No 418
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.033 Score=49.87 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 419
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.56 E-value=0.039 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+|+.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999987
No 420
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.55 E-value=0.041 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.+.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999988
No 421
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.53 E-value=0.038 Score=55.34 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.5
Q ss_pred ceEEEEecCCCChhHHHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
..++|+||+|+||||+.+.++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999999943
No 422
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.52 E-value=0.042 Score=52.94 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.|.+++|.|+.||||||+++.++..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999873
No 423
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.47 E-value=0.035 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.+.+
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999987
No 424
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.45 E-value=0.042 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.1
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999977
No 425
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.43 E-value=0.036 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=19.6
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|.||.||||||+.+.|+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999987
No 426
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.41 E-value=0.033 Score=50.16 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 489999999999999999987
No 427
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.41 E-value=0.033 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999999875
No 428
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.40 E-value=0.027 Score=50.33 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=19.2
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999876
No 429
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=93.38 E-value=0.036 Score=62.10 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.++.++|+|+||+|||||++.+++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCChHHHHHHHHHH
Confidence 688999999999999999999997
No 430
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.37 E-value=0.023 Score=60.81 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred CceEEEEecCCCChhHHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
...+.|+||+|+||||+.+.++..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 445789999999999999999983
No 431
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.34 E-value=0.035 Score=49.74 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=19.2
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 379999999999999999976
No 432
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.33 E-value=0.044 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|..++|+||.|+|||||...++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999887765
No 433
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.31 E-value=0.048 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.+++|.|+.||||||.++.++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987
No 434
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.30 E-value=0.044 Score=50.46 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999999988
No 435
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.30 E-value=0.037 Score=50.68 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.4
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999987
No 436
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.30 E-value=0.046 Score=48.77 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 437
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.29 E-value=0.045 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999987
No 438
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.29 E-value=0.041 Score=62.74 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.+..+.|+||.|+||||+.+.++..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999984
No 439
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.27 E-value=0.048 Score=49.19 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999987
No 440
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.26 E-value=0.041 Score=55.00 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+++|+|++||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 441
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.21 E-value=0.042 Score=55.73 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+++|+||+||||||+.+.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999999999887
No 442
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.20 E-value=0.049 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999987
No 443
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.20 E-value=0.048 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.0
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999987776
No 444
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.20 E-value=0.05 Score=49.77 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 445
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.20 E-value=0.045 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.8
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.+++|+||+|||||||...++-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46789999999999999999887
No 446
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.17 E-value=0.049 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++++|+.|+|||||++.+.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999988
No 447
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.14 E-value=0.05 Score=49.07 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999988
No 448
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.12 E-value=0.052 Score=49.50 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 449
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.11 E-value=0.05 Score=49.80 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 450
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.10 E-value=0.049 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.+.+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999988
No 451
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.10 E-value=0.05 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999888
No 452
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.04 E-value=0.052 Score=49.35 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999987
No 453
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.01 E-value=0.053 Score=50.07 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 9 ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999998
No 454
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.98 E-value=0.046 Score=53.37 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.|
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999999988
No 455
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.98 E-value=0.048 Score=57.38 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
...+++|+|++||||||+.+.++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999999999875
No 456
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.92 E-value=0.034 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999876
No 457
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.057 Score=48.87 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 458
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.87 E-value=0.055 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
+.+++|+|+.||||||+.+.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 459
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=92.86 E-value=0.057 Score=55.43 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=20.6
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|++|+|||||++.+++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999998
No 460
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=92.86 E-value=0.00023 Score=63.66 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=49.8
Q ss_pred EeeeeecCCCCCCcHHH------HHHH-----HCCCCHHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 006859 532 FKFQLKDGPRHVPHYGL------LLAE-----VAGLPSTVIETARS--ITSRITKKEVKRMEINCLQYKQIQMLYHAAQR 598 (628)
Q Consensus 532 ~~~~l~~G~~~~~~~a~------~la~-----~~g~p~~~l~~a~~--~~~~l~~~~~~~~~~~~~~~h~~~~~~~~~~~ 598 (628)
.-..||+|+++++.+|. +++. ++|+|++.+|.... +.+.+.+... ...++++++|+++ ...+||+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-LKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-GGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChHH-HHHhCCE
Confidence 34789999999877653 2323 67899999987765 5555543221 1237899999994 6689999
Q ss_pred HHhhhc
Q 006859 599 LICLKY 604 (628)
Q Consensus 599 ~~~l~~ 604 (628)
+++++.
T Consensus 132 ii~l~~ 137 (148)
T 1f2t_B 132 VIRISL 137 (148)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999853
No 461
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.86 E-value=0.057 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999988
No 462
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.85 E-value=0.058 Score=48.88 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 463
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.85 E-value=0.059 Score=49.66 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999988
No 464
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.84 E-value=0.014 Score=54.12 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=56.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCC-cccCC-CCCchHHHHHHhhcCCccc--cccCcCchHHHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGC-YVPAH-FSTIRVVDRIFTRMGTVDN--LESNSSTFMTEMKETAFVM 456 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~-~v~~~-~~~i~~~~~~~~~~~~~~~--~~~~~s~~s~~~~~~~~i~ 456 (628)
.|++..|+||-||||||.|-...+....+..-+ ++.+. ..... +.+.++.|..-. .......|.. ..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~-------~~ 89 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRDVAQ-------EA 89 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHHHHSEEEEESSGGGGHH-------HH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccCCcccceecCCHHHHHH-------hc
Confidence 588999999999999965555555444443222 23222 11111 112233321100 0111112221 11
Q ss_pred HhCCCCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCChhH
Q 006859 457 QNVSERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHMENL 506 (628)
Q Consensus 457 ~~~~~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~~~l 506 (628)
...+++++||.=.- . + ....++.+.+.|..|+++..+.++
T Consensus 90 ---~~~DvIlIDEaQFf--k-~----~ve~~~~L~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 90 ---LGVAVIGIDEGQFF--P-D----IVEFCEAMANAGKTVIVAALDGTF 129 (195)
T ss_dssp ---HTCSEEEESSGGGC--T-T----HHHHHHHHHHTTCEEEEEEESBCT
T ss_pred ---cCCCEEEEEchhhh--H-H----HHHHHHHHHHCCCeEEEEeccccc
Confidence 23689999998322 1 1 122446667789999999887543
No 465
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.84 E-value=0.061 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..++|+|+.||||||+.+.|+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999987
No 466
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.84 E-value=0.049 Score=56.15 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.3
Q ss_pred eEEEEecCCCChhHHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.++|+|++|+|||||++.+++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999993
No 467
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.83 E-value=0.051 Score=49.07 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999999987
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.81 E-value=0.058 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.3
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
|.+++|.|+.||||||+.+.|+-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 469
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.78 E-value=0.059 Score=50.04 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 470
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.74 E-value=0.061 Score=49.35 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 471
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.72 E-value=0.049 Score=52.83 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.|.|
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3589999999999999999988
No 472
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.71 E-value=0.063 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.2
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3589999999999999999988
No 473
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.71 E-value=0.063 Score=50.14 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999887
No 474
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.71 E-value=0.062 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..++|+|+.|+|||||++.+++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999988
No 475
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.69 E-value=0.063 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 476
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.68 E-value=0.059 Score=50.72 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
+++|+||.||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 477
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.67 E-value=0.067 Score=50.74 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.++++.|+.||||||+.+.++-
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999987
No 478
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.65 E-value=0.064 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999887
No 479
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.63 E-value=0.064 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.63 E-value=0.065 Score=51.05 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.9
Q ss_pred CCceEEEEecCCCChhHHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLI 405 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~ 405 (628)
.|.+++|.|+.||||||+.+.++.-
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999873
No 481
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.63 E-value=0.067 Score=49.23 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999999987
No 482
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.63 E-value=0.3 Score=45.94 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=52.7
Q ss_pred CCceEEEEecCCCChhHHHHHHHHHHHHHhcCCcc--cCCCCCchHHHHHHhhcCCccccccCcCchHHHHHHHHHHHHh
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCLIVILAQIGCYV--PAHFSTIRVVDRIFTRMGTVDNLESNSSTFMTEMKETAFVMQN 458 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g~~~~~~~g~~v--~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~~~i~~~ 458 (628)
.|.+..++||=||||||.+-.++--...+..-+++ |....... .+.+.+++|..-... +.... ..++..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s~~g~~~~a~-~~~~~-------~~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVSHNGLKVKAV-PVSAS-------KDIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEE-ECSSG-------GGGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHhhcCCeeEEe-ecCCH-------HHHHHH
Confidence 78999999999999999887776644333322222 22111111 123455555431110 11111 122233
Q ss_pred CC-CCcEEEEeCCCCCCChHHHHHHHHHHHHHHHhCCcEEEEEcCC
Q 006859 459 VS-ERSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAYTIFASHM 503 (628)
Q Consensus 459 ~~-~~~l~llDE~~~gt~~~~~~~~~~~~~~~l~~~~~~vi~~tH~ 503 (628)
+. ..++|++||.-. .+. .. . ..++.+...+..|+++-++
T Consensus 98 ~~~~~dvViIDEaQF-~~~---~~-V-~~l~~l~~~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQF-FDG---DI-V-EVVQVLANRGYRVIVAGLD 137 (214)
T ss_dssp CCSSCCEEEECCGGG-SCT---TH-H-HHHHHHHHTTCEEEEEECS
T ss_pred HhcCCCEEEEECccc-CCH---HH-H-HHHHHHhhCCCEEEEEecc
Confidence 32 479999999843 211 11 2 2445555568899998883
No 483
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.63 E-value=0.13 Score=59.54 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.4
Q ss_pred ceEEEEecCCCChhHHHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCLIV 406 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g~~ 406 (628)
..+.|+||+|+|||++.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999943
No 484
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.61 E-value=0.068 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=19.6
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 485
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.59 E-value=0.058 Score=54.34 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..++|+||+||||||+.+.|+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 486
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.55 E-value=0.067 Score=48.60 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=19.5
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999887
No 487
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.55 E-value=0.069 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.+.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999999998
No 488
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.41 E-value=0.065 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred CceEEEEecCCCChhHHHHHHHH
Q 006859 382 ANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 382 g~~~~i~GpNGsGKSTllk~i~g 404 (628)
..+++|+||+|||||||...++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 45789999999999999999987
No 489
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.38 E-value=0.074 Score=49.55 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 490
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.35 E-value=0.072 Score=48.98 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 491
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.35 E-value=0.075 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999988
No 492
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.33 E-value=0.04 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=19.3
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999865
No 493
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.30 E-value=0.06 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.5
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
..++|+|++|+|||||++.+.|
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3699999999999999999988
No 494
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.29 E-value=0.078 Score=46.64 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=21.5
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.+..+.|.||.|+|||++.+.|+.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999999988
No 495
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.29 E-value=0.075 Score=48.71 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.7
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 496
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.29 E-value=0.075 Score=48.95 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999988
No 497
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.28 E-value=0.076 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.8
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.27 E-value=0.082 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.1
Q ss_pred CCceEEEEecCCCChhHHHHHHHH
Q 006859 381 AANMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 381 ~g~~~~i~GpNGsGKSTllk~i~g 404 (628)
.|.-++|+|++|+||||+...+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 688899999999999999877655
No 499
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.23 E-value=0.064 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.3
Q ss_pred ceEEEEecCCCChhHHHHHHHH
Q 006859 383 NMVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 383 ~~~~i~GpNGsGKSTllk~i~g 404 (628)
-.++|+|+.|+|||||++.+.|
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999987
No 500
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.15 E-value=0.065 Score=52.38 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.9
Q ss_pred eEEEEecCCCChhHHHHHHHH
Q 006859 384 MVIVTGPNMSGKSTYLQQVCL 404 (628)
Q Consensus 384 ~~~i~GpNGsGKSTllk~i~g 404 (628)
.++|+|+.|+|||||++.++|
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999999988
Done!