BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006861
         (628 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P32812|YGL1_GEOSE Uncharacterized protein in gldA 5'region (Fragment) OS=Geobacillus
           stearothermophilus PE=4 SV=1
          Length = 97

 Score = 33.5 bits (75), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYSIE-----RHWQTLNEEAGGMNDVLYKL 312
           T+A+  E L+   W+ +  ++RV N+IK   IE     + ++  N+E  G+++ L +L
Sbjct: 22  TFAEYLEILKEKPWIAQSAHSRVYNMIKDAGIEEINGRKRYKFFNQEIFGLDEALERL 79


>sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig-1 PE=1 SV=2
          Length = 13100

 Score = 33.5 bits (75), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 572  PTWTSSNGAKATLNGQDLPLPSPGNFL------SVTKTWSSDDKLTIQLPLTLRTEAIQG 625
            P  T SNG   + +G  LP  + GN++      +VTK+  +DD   +  P+T+   ++  
Sbjct: 5838 PIPTDSNGVPLSEDGSPLPTDNQGNYVLVPTSETVTKSMPTDDNRNVIYPITMSDGSLLS 5897

Query: 626  T 626
            T
Sbjct: 5898 T 5898


>sp|Q38VV4|SYFB_LACSS Phenylalanine--tRNA ligase beta subunit OS=Lactobacillus sakei
           subsp. sakei (strain 23K) GN=pheT PE=3 SV=1
          Length = 806

 Score = 33.1 bits (74), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 21  VSAAQAKECTNAYPELASHTFRSNLLSSKNESYIKQIHSHNDHLTPSDDSAWLSLMPRKI 80
           + AA A + T+AYPE+      +  +       + QIH      T   ++    L   KI
Sbjct: 640 LQAAVAYQATDAYPEMHPGRTAAIYVGETFVGIVGQIHPKIAKATHLKETYIFELDLAKI 699

Query: 81  LREEEQDELFSWAMLYRKIKNPGQFKVP-------------ERSGEFLKEVSLHDVRLGS 127
           L  + Q  +   A  + ++      +VP             E+ G +L  VSL DV  GS
Sbjct: 700 LELQRQTIIAKPAPKFPEVTRDIALQVPEAITNADLVNAIKEKGGRYLVSVSLFDVYAGS 759

Query: 128 DSMHWRAQQTNLEYLL 143
              H  A + ++ Y L
Sbjct: 760 ---HIEAGEKSMAYTL 772


>sp|Q9PQL3|SYR_UREPA Arginine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
           700970) GN=argS PE=3 SV=1
          Length = 550

 Score = 32.7 bits (73), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 93  AMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVD 148
           A + + +KN  +FK+ +RSG+ L    L ++ +G D++ W    +++   +++DVD
Sbjct: 367 AQVMKLVKNNQEFKLSKRSGQSLTIKDLVEI-IGKDALRWFLGSSSMNSHVIIDVD 421


>sp|B1AIR8|SYR_UREP2 Arginine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
           27815 / 27 / NCTC 11736) GN=argS PE=3 SV=1
          Length = 550

 Score = 32.7 bits (73), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 93  AMLYRKIKNPGQFKVPERSGEFLKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVD 148
           A + + +KN  +FK+ +RSG+ L    L ++ +G D++ W    +++   +++DVD
Sbjct: 367 AQVMKLVKNNQEFKLSKRSGQSLTIKDLVEI-IGKDALRWFLGSSSMNSHVIIDVD 421


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,005,554
Number of Sequences: 539616
Number of extensions: 10577257
Number of successful extensions: 22599
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 22561
Number of HSP's gapped (non-prelim): 44
length of query: 628
length of database: 191,569,459
effective HSP length: 124
effective length of query: 504
effective length of database: 124,657,075
effective search space: 62827165800
effective search space used: 62827165800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)