Query 006861
Match_columns 628
No_of_seqs 193 out of 881
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 15:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07944 DUF1680: Putative gly 100.0 5E-105 1E-109 894.1 46.5 478 122-623 1-499 (520)
2 COG3533 Uncharacterized protei 100.0 8E-104 2E-108 831.5 35.8 476 115-627 9-487 (589)
3 cd00249 AGE AGE domain; N-acyl 98.9 3.9E-07 8.4E-12 98.8 23.0 273 182-467 55-352 (384)
4 cd00249 AGE AGE domain; N-acyl 98.3 3.2E-05 7E-10 83.8 18.7 194 182-384 117-336 (384)
5 PF03663 Glyco_hydro_76: Glyco 98.2 8.8E-06 1.9E-10 88.5 12.8 184 182-384 38-255 (370)
6 COG1331 Highly conserved prote 98.1 0.00066 1.4E-08 77.4 23.3 264 166-454 199-574 (667)
7 PF07944 DUF1680: Putative gly 98.1 9.2E-05 2E-09 84.1 16.7 193 245-450 60-267 (520)
8 PF07470 Glyco_hydro_88: Glyco 98.1 0.00035 7.5E-09 74.9 20.1 233 182-455 27-290 (336)
9 cd04791 LanC_SerThrkinase Lant 97.9 0.00023 4.9E-09 75.2 15.6 182 185-384 88-275 (321)
10 cd04791 LanC_SerThrkinase Lant 97.9 0.00096 2.1E-08 70.5 18.8 178 251-453 88-276 (321)
11 PF03663 Glyco_hydro_76: Glyco 97.7 0.00022 4.7E-09 77.7 11.0 231 201-453 2-256 (370)
12 COG1331 Highly conserved prote 97.5 0.0033 7.1E-08 71.9 17.7 131 251-382 416-567 (667)
13 cd04792 LanM-like LanM-like pr 97.3 0.013 2.9E-07 70.3 20.2 215 188-447 549-777 (825)
14 PF07221 GlcNAc_2-epim: N-acyl 97.3 0.0047 1E-07 66.3 14.8 251 182-446 23-304 (346)
15 COG3533 Uncharacterized protei 97.2 0.0012 2.7E-08 72.3 9.5 118 182-330 133-258 (589)
16 cd04434 LanC_like LanC-like pr 97.1 0.047 1E-06 57.5 20.1 225 186-452 56-300 (343)
17 PF07221 GlcNAc_2-epim: N-acyl 96.9 0.0093 2E-07 64.1 12.7 185 184-384 85-309 (346)
18 PF06662 C5-epim_C: D-glucuron 96.8 0.014 3E-07 57.6 11.8 142 179-329 29-188 (189)
19 cd04794 euk_LANCL eukaryotic L 96.6 0.085 1.8E-06 56.7 16.7 191 184-385 105-305 (343)
20 PTZ00470 glycoside hydrolase f 96.5 0.039 8.3E-07 62.6 14.2 78 251-329 160-251 (522)
21 cd04794 euk_LANCL eukaryotic L 96.5 0.14 3E-06 55.1 17.8 226 185-449 57-302 (343)
22 cd04434 LanC_like LanC-like pr 96.4 0.11 2.4E-06 54.8 16.4 188 185-383 104-299 (343)
23 cd04792 LanM-like LanM-like pr 96.4 0.18 3.9E-06 60.7 19.8 219 189-447 500-732 (825)
24 COG4403 LcnDR2 Lantibiotic mod 96.3 0.034 7.4E-07 65.0 12.1 120 183-328 699-821 (963)
25 COG4225 Predicted unsaturated 96.3 0.077 1.7E-06 56.2 13.5 188 251-455 41-246 (357)
26 PF01532 Glyco_hydro_47: Glyco 96.2 0.034 7.3E-07 62.3 11.6 195 251-450 82-312 (452)
27 PF07470 Glyco_hydro_88: Glyco 96.1 0.029 6.3E-07 60.1 10.1 131 305-455 30-162 (336)
28 PTZ00470 glycoside hydrolase f 96.0 0.26 5.7E-06 56.0 17.4 258 182-452 157-455 (522)
29 PF01532 Glyco_hydro_47: Glyco 95.8 0.077 1.7E-06 59.5 11.7 265 182-452 79-389 (452)
30 cd04793 LanC LanC is the cycla 95.5 0.6 1.3E-05 50.9 17.2 183 197-384 120-327 (382)
31 PF06662 C5-epim_C: D-glucuron 95.2 0.15 3.3E-06 50.4 10.2 132 307-444 37-186 (189)
32 COG2942 N-acyl-D-glucosamine 2 95.2 0.48 1E-05 51.4 14.7 195 173-383 111-336 (388)
33 KOG2787 Lanthionine synthetase 93.9 0.52 1.1E-05 49.7 10.9 130 183-330 221-356 (403)
34 COG4225 Predicted unsaturated 93.6 0.29 6.3E-06 52.0 8.5 141 301-464 37-180 (357)
35 PF00759 Glyco_hydro_9: Glycos 93.1 3.2 7E-05 46.2 16.5 128 198-330 93-245 (444)
36 cd04793 LanC LanC is the cycla 92.2 2.2 4.7E-05 46.5 13.4 138 185-329 177-322 (382)
37 COG2942 N-acyl-D-glucosamine 2 91.9 2.2 4.8E-05 46.4 12.6 141 182-329 176-332 (388)
38 KOG2429 Glycosyl hydrolase, fa 91.7 1.1 2.4E-05 50.4 10.2 76 195-281 211-293 (622)
39 PF05147 LANC_like: Lanthionin 91.5 0.37 7.9E-06 51.3 6.3 180 192-384 118-308 (355)
40 KOG2244 Highly conserved prote 90.8 1.4 3.1E-05 49.3 9.9 141 182-328 507-671 (786)
41 KOG2787 Lanthionine synthetase 89.1 6.1 0.00013 41.9 12.4 109 264-384 240-360 (403)
42 PF05147 LANC_like: Lanthionin 87.8 1.7 3.6E-05 46.3 7.8 129 185-329 172-303 (355)
43 COG4403 LcnDR2 Lantibiotic mod 86.6 13 0.00028 44.5 14.3 159 190-376 657-819 (963)
44 PLN02909 Endoglucanase 85.6 15 0.00034 41.5 14.1 120 198-327 119-264 (486)
45 PLN02345 endoglucanase 83.9 11 0.00024 42.5 12.1 123 198-326 81-228 (469)
46 PLN02266 endoglucanase 83.9 18 0.00038 41.3 13.7 127 198-328 129-280 (510)
47 PF06917 Pectate_lyase_2: Peri 83.8 3 6.4E-05 46.6 7.2 74 252-328 390-465 (557)
48 KOG2244 Highly conserved prote 83.4 68 0.0015 36.6 17.3 46 182-227 338-383 (786)
49 PLN00119 endoglucanase 82.0 18 0.00038 41.1 12.7 126 198-328 116-265 (489)
50 KOG2204 Mannosyl-oligosacchari 80.6 12 0.00026 42.4 10.5 129 181-319 267-411 (625)
51 KOG2431 1, 2-alpha-mannosidase 80.5 2.1 4.5E-05 46.7 4.4 79 251-329 180-270 (546)
52 PLN02175 endoglucanase 80.5 17 0.00036 41.3 11.8 117 252-383 175-308 (484)
53 PLN02613 endoglucanase 80.4 20 0.00043 40.8 12.4 122 197-328 110-257 (498)
54 KOG2204 Mannosyl-oligosacchari 78.5 18 0.00039 41.1 10.9 29 194-224 344-372 (625)
55 PLN02340 endoglucanase 78.4 31 0.00067 40.3 13.4 126 198-328 115-264 (614)
56 PF06917 Pectate_lyase_2: Peri 77.1 9.6 0.00021 42.7 8.3 87 182-281 386-472 (557)
57 PLN02420 endoglucanase 74.9 42 0.00092 38.5 13.1 169 154-328 69-276 (525)
58 PF13243 Prenyltrans_1: Prenyl 74.6 3.1 6.8E-05 36.4 3.3 37 188-226 31-67 (109)
59 PLN02308 endoglucanase 72.7 62 0.0013 36.9 13.6 124 199-327 112-261 (492)
60 PLN03009 cellulase 70.2 53 0.0011 37.5 12.4 172 153-327 55-264 (495)
61 TIGR02474 pec_lyase pectate ly 68.1 6.3 0.00014 41.6 4.2 51 417-470 44-94 (290)
62 KOG2430 Glycosyl hydrolase, fa 68.1 26 0.00056 37.5 8.6 144 166-330 235-389 (587)
63 PF09492 Pec_lyase: Pectic aci 64.2 20 0.00044 37.8 7.0 90 359-455 48-146 (289)
64 PLN02171 endoglucanase 62.1 1.1E+02 0.0023 36.2 13.0 125 199-328 116-265 (629)
65 PF05592 Bac_rhamnosid: Bacter 60.0 54 0.0012 37.1 10.2 130 186-329 156-311 (509)
66 TIGR02474 pec_lyase pectate ly 59.0 70 0.0015 33.9 9.9 89 185-281 49-149 (290)
67 PRK13807 maltose phosphorylase 57.2 48 0.001 39.8 9.4 148 122-282 307-466 (756)
68 COG1554 ATH1 Trehalose and mal 53.4 60 0.0013 38.7 9.2 111 163-283 344-476 (772)
69 KOG2430 Glycosyl hydrolase, fa 53.2 1.5E+02 0.0032 32.0 11.0 179 193-391 198-400 (587)
70 PF09492 Pec_lyase: Pectic aci 50.3 78 0.0017 33.5 8.6 92 184-282 43-145 (289)
71 cd02889 SQCY Squalene cyclase 49.8 1.5E+02 0.0033 31.3 11.2 45 182-228 94-140 (348)
72 PF13249 Prenyltrans_2: Prenyl 39.2 73 0.0016 27.6 5.6 61 205-281 42-104 (113)
73 PHA02811 putative host range p 39.2 44 0.00095 32.8 4.3 40 551-592 32-74 (197)
74 PF12273 RCR: Chitin synthesis 38.7 23 0.00049 32.7 2.3 23 3-25 1-23 (130)
75 PF03632 Glyco_hydro_65m: Glyc 38.6 62 0.0013 35.5 6.0 110 164-283 27-147 (370)
76 TIGR01507 hopene_cyclase squal 38.3 1.2E+02 0.0027 35.7 8.7 56 166-228 364-426 (635)
77 cd02892 SQCY_1 Squalene cyclas 38.1 1.7E+02 0.0036 34.5 9.9 57 166-228 358-423 (634)
78 PF09586 YfhO: Bacterial membr 38.1 88 0.0019 37.8 7.8 58 551-614 773-831 (843)
79 COG1188 Ribosome-associated he 35.3 62 0.0014 28.7 4.3 33 579-620 33-65 (100)
80 KOG2429 Glycosyl hydrolase, fa 34.3 4.5E+02 0.0098 30.4 11.7 117 198-325 150-283 (622)
81 COG1339 Transcriptional regula 34.3 43 0.00094 33.3 3.5 45 568-619 145-197 (214)
82 KOG2431 1, 2-alpha-mannosidase 34.0 76 0.0017 35.1 5.6 115 351-468 176-292 (546)
83 PF13243 Prenyltrans_1: Prenyl 32.4 9.5 0.00021 33.3 -1.3 60 205-283 1-60 (109)
84 TIGR03000 plancto_dom_1 Planct 31.6 2.6E+02 0.0056 23.6 7.2 21 565-590 3-23 (75)
85 PF03287 Pox_C7_F8A: Poxvirus 30.2 76 0.0017 30.2 4.3 40 551-592 32-74 (149)
86 TIGR03463 osq_cycl 2,3-oxidosq 28.5 3.8E+02 0.0081 31.7 10.6 109 166-282 357-490 (634)
87 TIGR00187 ribE riboflavin synt 28.3 1.7E+02 0.0036 29.3 6.6 54 564-618 21-90 (200)
88 PRK09289 riboflavin synthase s 27.5 1.9E+02 0.0041 28.7 6.9 40 579-618 38-89 (194)
89 PRK09289 riboflavin synthase s 27.0 1.8E+02 0.004 28.8 6.6 58 562-619 115-187 (194)
90 PRK13020 riboflavin synthase s 25.6 1.8E+02 0.0039 29.2 6.3 40 579-618 39-90 (206)
91 cd02889 SQCY Squalene cyclase 25.3 1.9E+02 0.0041 30.6 7.0 88 195-282 37-130 (348)
92 TIGR01787 squalene_cyclas squa 24.3 1.2E+03 0.026 27.4 15.7 81 197-282 382-473 (621)
93 PHA02919 host-range protein; P 21.9 1.4E+02 0.003 28.3 4.2 40 551-592 31-73 (150)
94 TIGR01535 glucan_glucosid gluc 20.9 7.5E+02 0.016 29.4 11.1 116 190-328 304-438 (648)
95 PLN02993 lupeol synthase 20.8 2.6E+02 0.0056 33.8 7.3 81 182-282 566-652 (763)
96 PRK13020 riboflavin synthase s 20.7 2.1E+02 0.0045 28.8 5.7 57 562-618 116-187 (206)
97 TIGR01577 oligosac_amyl oligos 20.7 7.2E+02 0.016 29.1 11.0 129 169-328 295-449 (616)
98 PRK05659 sulfur carrier protei 20.7 1.1E+02 0.0025 24.2 3.2 32 579-615 31-62 (66)
No 1
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=4.8e-105 Score=894.12 Aligned_cols=478 Identities=38% Similarity=0.651 Sum_probs=435.3
Q ss_pred CeEecCCCchHHHHHHHHhhhhccccchhhHHHHHhcCCCCCCCCCCCCC--CCCcCCCccchHHHHHHHHHHHHhcCCh
Q 006861 122 DVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWE--EPSCELRGHFVGHYLSASALMWASTHNE 199 (628)
Q Consensus 122 ~V~l~~~~~~~~~~~~~~~~ll~ld~drll~nFr~~agl~~~g~~~ggWe--~~d~~l~Gh~~G~~LsalA~~ya~t~D~ 199 (628)
+|+|++ |+|+++|+++.++++++++|+|+.+||..||++..+.++|||| +++..++||++||||||+|++|+.++|+
T Consensus 1 ~V~l~~-~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~D~ 79 (520)
T PF07944_consen 1 DVRLTD-GFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTGDP 79 (520)
T ss_pred CeEECc-HHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCCCH
Confidence 699985 7999999999999999999999999999999999888999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccc----cchhhhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006861 200 SLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP----YYTIHKILAGLLDQYTYADNAEALRMTTWMV 275 (628)
Q Consensus 200 ~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~p----yy~~Hki~aGLl~~Y~~tG~~kaL~ia~~~a 275 (628)
+|+++++++|+.|++||+ +||||+++++.. ..+....|+| +|+.|||+.||+++|++|||+++|++++|++
T Consensus 80 ~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~a 154 (520)
T PF07944_consen 80 ELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLA 154 (520)
T ss_pred HHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHH
Confidence 999999999999999999 999999998753 1134577888 9999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccch--hhccCCCCCCCcccCCc
Q 006861 276 EYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL--LALQADDISGFHSNTHI 353 (628)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~--~~~~~d~l~g~hanthi 353 (628)
||+.+++....+ +....++.+++|||+++|++||++|||++||++|++|++..+.++ +..+.|.+.+.|+|+++
T Consensus 155 d~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~~~~a~~~~ 230 (520)
T PF07944_consen 155 DWVYRRLSRLGP----EPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLPGRHANTHI 230 (520)
T ss_pred HHHHHHhccCCH----HHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCCCcccccee
Confidence 999655443211 111233447899999999999999999999999999999888887 77788899999999999
Q ss_pred chhh-------HHHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCCC---CCCCCCcccccCCCCCccccchHHHHH
Q 006861 354 PIVI-------GSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG---EFWSDPKRLASNLDSNTEESCTTYNML 423 (628)
Q Consensus 354 p~~~-------G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~---E~f~~~~~L~~~~~~~~~EtCas~~~l 423 (628)
|.++ |++++|++|||++|+++++++|++|+++|||+|||+|++ |+|+.++++|+ ...++|||++++||
T Consensus 231 ~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~--~~~~~EtCas~~~~ 308 (520)
T PF07944_consen 231 GHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPN--RLAYAETCASVNMM 308 (520)
T ss_pred eEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCc--CCCCccccHHHHHH
Confidence 9877 999999999999999999999999999999999999998 99999999987 45669999999999
Q ss_pred HHHHHhhhccCCchhHHHHHHHHhhhhhccCCCCCCCcEEEEccCCCCCCCCcCCCccCCCCCCCcccCCCcCCchhhcc
Q 006861 424 KVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLG 503 (628)
Q Consensus 424 ~~~~~L~~~tgd~~YaD~~Er~lyN~ila~~~~~d~~~~~Y~~pl~~g~~k~~~~~~~~~~~~~f~CC~gt~~~~~~kl~ 503 (628)
+++++||++|||++|+|+|||++||++||+|++ |++.++|+|||+++..+... ..+++++.+||||+||++|+++||+
T Consensus 309 ~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~~r~~~~~~ 386 (520)
T PF07944_consen 309 KLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNGARGWAKLP 386 (520)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchHHHHHHHHh
Confidence 999999999999999999999999999999986 99999999999887654321 2456788899999999999999999
Q ss_pred cceEeeecCCCCcEEEEEeeCcEEEEeeCc--eEEEEEEcCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCCCCCCcE
Q 006861 504 DSIYFEEEGKYPGVYIIQYISSRLDWKSGQ--IVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAK 581 (628)
Q Consensus 504 ~~iY~~~~~~~~~L~v~lyipS~l~~~~~g--v~l~q~t~~~yp~~~~~~v~i~v~~~~~~~~ftL~lRIP~Wa~~~~~~ 581 (628)
++||++++ ++||||||+||+++|+.++ |+|+|+|+ |||++ +|+|+|+++ ++.+|+|+||||+||+ +++
T Consensus 387 ~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~-~~~~f~l~lRIP~Wa~--~~~ 456 (520)
T PF07944_consen 387 DYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD-KPVPFTLRLRIPSWAK--GAT 456 (520)
T ss_pred hhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC-CCccEEEEEEccCCCC--CcE
Confidence 99999986 6999999999999999988 77778877 99998 899999875 7899999999999998 799
Q ss_pred EEECCee-cCCCCCCCEEEEEeecCCCCEEEEEecCceeEEeC
Q 006861 582 ATLNGQD-LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAI 623 (628)
Q Consensus 582 v~VNG~~-~~~~~~~gy~~I~R~W~~GD~I~L~lpm~~r~~~~ 623 (628)
|+|||++ +....++||++|+|+|++||+|+|+|||++|++++
T Consensus 457 i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~ 499 (520)
T PF07944_consen 457 IRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPA 499 (520)
T ss_pred EEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeC
Confidence 9999999 55667899999999999999999999999999999
No 2
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=8.5e-104 Score=831.50 Aligned_cols=476 Identities=26% Similarity=0.430 Sum_probs=429.3
Q ss_pred cccccCCCeEecCCCchHHHHHHHHhhhhccccchhhHHHHHhcCCCCCCCCCCCCCCCCcCCCccchHHHHHHHHHHHH
Q 006861 115 LKEVSLHDVRLGSDSMHWRAQQTNLEYLLMLDVDKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWA 194 (628)
Q Consensus 115 ~~~~~l~~V~l~~~~~~~~~~~~~~~~ll~ld~drll~nFr~~agl~~~g~~~ggWe~~d~~l~Gh~~G~~LsalA~~ya 194 (628)
++++++++|.+ +++ |..+.++++.++.|+|++++-..+.++.....++||+... +.||-+||||||+|++++
T Consensus 9 ~r~v~v~~~~~--~~~----qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q~--f~dsdlgkwlea~A~~l~ 80 (589)
T COG3533 9 LRPVTVKDVIF--GQF----QGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQM--FWDSDLGKWLEAAAYSLA 80 (589)
T ss_pred cccCCcCchhc--ccc----ccccceeEEecCHHHHHhHhhhccCCCccCcccccceeee--eccccHHHHHHHHHHHHh
Confidence 77888888877 344 5667789999999999999999999998888899998544 446669999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchh--hhhhhhcCCcccccchhhhhHHHHHHHHHHcCCHHHHHHHH
Q 006861 195 STHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQ--FDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTT 272 (628)
Q Consensus 195 ~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~--~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~~kaL~ia~ 272 (628)
.++|++|.+++|++|+++++.|+ +|||||++.+.. ..||.+++..++.|+.+|+|.++ +++|++||+.++|+|++
T Consensus 81 ~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~-va~~qaTGkr~lldV~~ 157 (589)
T COG3533 81 NKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGG-VAAHQATGKRRLLDVVC 157 (589)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchHHHHhHHHHhhh-hHHHHhhCcchHHHHHH
Confidence 99999999999999999999999 999999998743 36899999999988888777755 59999999999999999
Q ss_pred HHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccchhhccCCCCCCCcccCC
Q 006861 273 WMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTH 352 (628)
Q Consensus 273 ~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~~~~d~l~g~hanth 352 (628)
++|||+.+.|++... +.++.+++++|+++|++||+.|||+|||+||++|.++...+|++.+.+.+.+.||++.
T Consensus 158 rlADhi~tvfgp~~~-------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHAvr~ 230 (589)
T COG3533 158 RLADHIATVFGPEED-------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHAVRQ 230 (589)
T ss_pred HHHHhhhhhcCcccc-------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhHHHH
Confidence 999999998876432 2344578889999999999999999999999999999888888877777888999999
Q ss_pred cchhhHHHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCC-CCCCCCCcccccCCCCCccccchHHHHHHHHHHhhh
Q 006861 353 IPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV-GEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFR 431 (628)
Q Consensus 353 ip~~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~-~E~f~~~~~L~~~~~~~~~EtCas~~~l~~~~~L~~ 431 (628)
+|+.+|+|++|++|||+.+++++++||++++++|+|||||+|+ +|+|+.+|+||+ .+.|+|||+|||||||++||+.
T Consensus 231 iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~Rml~ 308 (589)
T COG3533 231 IYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARRMLG 308 (589)
T ss_pred HHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999975 599999999998 5799999999999999999999
Q ss_pred ccCCchhHHHHHHHHhhhhhccCCCCCCCcEEEEccCCCCCCCCcCCCccCCCCCCCcccCCCcCCchhhcccceEeeec
Q 006861 432 WTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYFEEE 511 (628)
Q Consensus 432 ~tgd~~YaD~~Er~lyN~ila~~~~~d~~~~~Y~~pl~~g~~k~~~~~~~~~~~~~f~CC~gt~~~~~~kl~~~iY~~~~ 511 (628)
+.+|++|||+|||+|||++|++|++ |+++|||+|||+.+.. +.+.++.+||||.||+.+.++|+++|||...+
T Consensus 309 ~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~~~~ 381 (589)
T COG3533 309 WGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYTRAD 381 (589)
T ss_pred cCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEccCC
Confidence 9999999999999999999999985 9999999999985431 22457788999999999999999999999987
Q ss_pred CCCCcEEEEEeeCcEEEEeeCceEEEEEEcCCCCCCCCeEEEEEEEeCCCCeeeEEEEeccCCCCCCCcEEEECCeecCC
Q 006861 512 GKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPL 591 (628)
Q Consensus 512 ~~~~~L~v~lyipS~l~~~~~gv~l~q~t~~~yp~~~~~~v~i~v~~~~~~~~ftL~lRIP~Wa~~~~~~v~VNG~~~~~ 591 (628)
++||||||+.|+++.+..+|.|+|+|+ |||++ +|+|+|... .+.+|+|+||||+||. .++++|||+.+..
T Consensus 382 ---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~~~~ 451 (589)
T COG3533 382 ---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKEVIQ 451 (589)
T ss_pred ---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcchhh
Confidence 599999999999999988899999988 99998 899999885 7899999999999998 8999999977666
Q ss_pred CCCCCEEEEEeecCCCCEEEEEecCceeEEeCCCCC
Q 006861 592 PSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQGTF 627 (628)
Q Consensus 592 ~~~~gy~~I~R~W~~GD~I~L~lpm~~r~~~~~d~~ 627 (628)
...+||++|+|+||+||+|+|.|||++|+++-||+.
T Consensus 452 ~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r 487 (589)
T COG3533 452 TRGKGYARISREWQAGDRVELMLPMPVRIYANPDVR 487 (589)
T ss_pred ccCCCeeeeeehhcCCCeEEEeecceeEeecCCcch
Confidence 667899999999999999999999999999888763
No 3
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.85 E-value=3.9e-07 Score=98.76 Aligned_cols=273 Identities=13% Similarity=0.078 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcC-CcccccCCchhhhhhhhcCCcccc-cchhhhhHHHHHHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAP-YYTIHKILAGLLDQY 259 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~-dGYl~~~~~~~~~r~~~~~~~w~p-yy~~Hki~aGLl~~Y 259 (628)
.+..|-|+|.+|..+++++.++.++..++.|.+.-.... .||+..+..+. ..... .+ .|..-.++.|+.++|
T Consensus 55 ~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g----~~~~~--~~~l~~~a~~l~ala~~~ 128 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG----RPVDA--TKDLYSHAFALLAAAQAA 128 (384)
T ss_pred ecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC----CCccc--ccchHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999998643112 46766553210 00000 01 222223566888999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhhhhhccc--cccccccccccccch--HHHHHHHHHHcCCHHHHHHHhhccc---cc
Q 006861 260 TYADNAEALRMTTWMVEYFYNRVQNVIKKYS--IERHWQTLNEEAGGM--NDVLYKLFCITQDPKHLMLAHLFDK---PC 332 (628)
Q Consensus 260 ~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~--~~~~~~~l~~e~GGm--~~~L~~LY~~TGd~ryL~lA~~f~~---~~ 332 (628)
+++|++++|+.|+++++++.+++-+..+.+- ....+.....-..=| .++|..||++|||++|++.|+.+.+ ..
T Consensus 129 ~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~ 208 (384)
T cd00249 129 KVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDR 208 (384)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888731111110 000011111100112 3689999999999999999976421 11
Q ss_pred ccch----h--hccCC--CC---CCCccc-CC-cchhhHHHHHHHHhCChHHHHHHHHHHHHhhhcCce-e-ecCCCCCC
Q 006861 333 FLGL----L--ALQAD--DI---SGFHSN-TH-IPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTY-A-TGGTSVGE 397 (628)
Q Consensus 333 ~~~~----~--~~~~d--~l---~g~han-th-ip~~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y-~-TGG~g~~E 397 (628)
+..+ + ....+ .+ .+...+ .| ...+.+....++++||+.|++.++..++.+.+ ++. . +||+- +
T Consensus 209 ~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~-~~~d~~~G~~~--~ 285 (384)
T cd00249 209 FIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALA-LGWDPERGGLY--Y 285 (384)
T ss_pred hcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-hCcCccCCCEE--E
Confidence 1111 0 00011 00 011110 01 11223456779999999999999999998774 332 2 23221 1
Q ss_pred CCCCCcccccCCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHHhhhhhc-cCCCCCCCcEEEEcc
Q 006861 398 FWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG-IQRGTEPGVMIYLLP 467 (628)
Q Consensus 398 ~f~~~~~L~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~ila-~~~~~d~~~~~Y~~p 467 (628)
....+...+ ...+.-.....++++....|++++||.+|.+.++++. +.+.. ..++..|+=+.+.++
T Consensus 286 ~~~~~~~~~---~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~-~~~~~~~~d~~~G~w~~~~~~ 352 (384)
T cd00249 286 SFLDDGGLL---EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAW-AYLWRHFIDPEYGLWFGYLDA 352 (384)
T ss_pred eeECCCCCc---ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHhcCCCCCCcceeeECC
Confidence 011111111 1234455667888888888999999999999998874 23332 223223444445444
No 4
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.30 E-value=3.2e-05 Score=83.80 Aligned_cols=194 Identities=10% Similarity=0.020 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCc-ccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSG-YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYT 260 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dG-Yl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~ 260 (628)
-++.|.|++.+|..++|++.++.+.++++.+.+... .++| ++...... .. ......-.+|.+. +++..++
T Consensus 117 ~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~-~~~g~~~~~~~~~----~~---~~~~~~~~~h~~~-all~l~~ 187 (384)
T cd00249 117 HAFALLAAAQAAKVGGDPEARALAEETIDLLERRFW-EDHPGAFDEADPG----TP---PYRGSNPHMHLLE-AMLAAYE 187 (384)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-cCCCcccCCCCCC----CC---CCCCCChhHHHHH-HHHHHHH
Confidence 467899999999999999999999999999988874 1333 43222111 00 1111222346566 5779999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhhhhhc-cc--cccccccccccc-----cchH----HHHHHHHHHcCCHHHHHHHhhc
Q 006861 261 YADNAEALRMTTWMVEYFYNRVQNVIKK-YS--IERHWQTLNEEA-----GGMN----DVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 261 ~tG~~kaL~ia~~~ad~~~~~~~~~~~~-~~--~~~~~~~l~~e~-----GGm~----~~L~~LY~~TGd~ryL~lA~~f 328 (628)
+||+++.++.+.++.+.+.+.+.....+ +. ...-|.++..+. -|++ ..|.+||+.|||++|++.|+.+
T Consensus 188 ~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~ 267 (384)
T cd00249 188 ATGEQKYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRL 267 (384)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999999999999999998776421111 10 000111111000 1222 4668999999999999999875
Q ss_pred cc---ccccchhh-------ccCCCC---CCCcccCCcchhhHHHHHHHHhCChHHHHHHHHHHHHhhh
Q 006861 329 DK---PCFLGLLA-------LQADDI---SGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (628)
Q Consensus 329 ~~---~~~~~~~~-------~~~d~l---~g~hanthip~~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~ 384 (628)
.. ..+.++.. ...+.. .+.....|.-.+.+....|++|||+.|++.++..++.+.+
T Consensus 268 ~~~~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~ 336 (384)
T cd00249 268 FDLALALGWDPERGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWR 336 (384)
T ss_pred HHHHHHhCcCccCCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 32 11212110 001110 0000011111234577889999999999999988888763
No 5
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=98.25 E-value=8.8e-06 Score=88.50 Aligned_cols=184 Identities=15% Similarity=0.157 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCch--hhhhhhhcCCcccccchhhhhHHHHHHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTE--QFDRLEALIPVWAPYYTIHKILAGLLDQY 259 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~--~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y 259 (628)
.|+.++++.-.+..++|+++.+.+.+.+........ +-|....... ..|. ..| +-.+++++|
T Consensus 38 ~a~~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~DD-----~aw--------~~la~l~ay 101 (370)
T PF03663_consen 38 QAVMLSALIDYYRRTGDPTYNDLIQNALLNQRGPNY---DSYNPSNGSGDRYYDD-----NAW--------WALALLRAY 101 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT---SSS--S------BHHH-----HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhcccc---cccccccccccCccCh-----HHH--------HHHHHHHHH
Confidence 688999999999999998888888877766543321 2233221110 1111 112 234667999
Q ss_pred HHcCCH-----HHHHHHHHHHHHHHHHhhhhh-hcccccccccc---------cc-ccccchHHHHHHHHHHcCCHHHHH
Q 006861 260 TYADNA-----EALRMTTWMVEYFYNRVQNVI-KKYSIERHWQT---------LN-EEAGGMNDVLYKLFCITQDPKHLM 323 (628)
Q Consensus 260 ~~tG~~-----kaL~ia~~~ad~~~~~~~~~~-~~~~~~~~~~~---------l~-~e~GGm~~~L~~LY~~TGd~ryL~ 323 (628)
+.||++ +.|+.|+...+++...+.... .+ .-+|.. .+ +..|......++||++|||++||+
T Consensus 102 e~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgG---Gi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~ 178 (370)
T PF03663_consen 102 ELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGG---GIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLD 178 (370)
T ss_dssp HHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS----BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCC---CccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHH
Confidence 999999 999999999999986655431 11 112331 11 112223356789999999999999
Q ss_pred HHhhccc---c-cccchh-hccCCCC----------CCCcccCCcchhhHHHHHHHHhCCh-HHHHHHHHHHHHhhh
Q 006861 324 LAHLFDK---P-CFLGLL-ALQADDI----------SGFHSNTHIPIVIGSQMRYEVTGDQ-LHKTISMFFMDIVNS 384 (628)
Q Consensus 324 lA~~f~~---~-~~~~~~-~~~~d~l----------~g~hanthip~~~G~a~~Y~~TGD~-~y~~a~~~~~~~v~~ 384 (628)
.|++..+ . .+.++. ..-.|.+ ...+.+.+..++.|++.+|+.|+++ .|++.++...+.+.+
T Consensus 179 ~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~ 255 (370)
T PF03663_consen 179 WAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAIN 255 (370)
T ss_dssp HHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 9988632 1 232221 0000111 1122333444567789999999887 999999999888864
No 6
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00066 Score=77.39 Aligned_cols=264 Identities=18% Similarity=0.159 Sum_probs=154.8
Q ss_pred CCCCCCCCCcCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh--hcCCcccccCCchhhhhhhhcCCccc
Q 006861 166 PYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQK--EIGSGYLSAFPTEQFDRLEALIPVWA 243 (628)
Q Consensus 166 ~~ggWe~~d~~l~Gh~~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~--~~~dGYl~~~~~~~~~r~~~~~~~w~ 243 (628)
.||||-+.+-.. ..|-|+-+-..+..++|++-+..+..-++.++.-=- ..+.|+ -|+. ....|-
T Consensus 199 ~~GGfg~~pKFP----~~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGIyDhlgGGF---------~RYS-tD~~Wl 264 (667)
T COG1331 199 EYGGFGSAPKFP----PPHLLLFLLRYSLRTGDERALDMVLRTLDAMARGGIYDHLGGGF---------FRYS-TDREWL 264 (667)
T ss_pred hhCCcCCCCCCC----ChHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCCccccCCce---------eeee-cCCcee
Confidence 577886655433 467777788777789999888888888887753211 001122 2221 112332
Q ss_pred -c-----cchhhhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhcc---------cccc---ccc------ccc
Q 006861 244 -P-----YYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKY---------SIER---HWQ------TLN 299 (628)
Q Consensus 244 -p-----yy~~Hki~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~---------~~~~---~~~------~l~ 299 (628)
| .|..-.++.....+|..|||+.+++++....+|+.+.+...-+++ +.++ -|. .+.
T Consensus 265 vPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg 344 (667)
T COG1331 265 VPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLG 344 (667)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhc
Confidence 2 444444666667899999999999999999999987653210000 0000 010 000
Q ss_pred ------------------------------------------------------------------ccccchHHHHHHHH
Q 006861 300 ------------------------------------------------------------------EEAGGMNDVLYKLF 313 (628)
Q Consensus 300 ------------------------------------------------------------------~e~GGm~~~L~~LY 313 (628)
.-.|-|..+|++++
T Consensus 345 ~d~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~ 424 (667)
T COG1331 345 EDAELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAG 424 (667)
T ss_pred ccHHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHH
Confidence 00234567999999
Q ss_pred HHcCCHHHHHHHhhcc---cccccchhhccCCCCCCCc----------ccCCcchhhHHHHHHHHhCChHHHHHHHHHHH
Q 006861 314 CITQDPKHLMLAHLFD---KPCFLGLLALQADDISGFH----------SNTHIPIVIGSQMRYEVTGDQLHKTISMFFMD 380 (628)
Q Consensus 314 ~~TGd~ryL~lA~~f~---~~~~~~~~~~~~d~l~g~h----------anthip~~~G~a~~Y~~TGD~~y~~a~~~~~~ 380 (628)
+.+||++|++.|++.. ...+... .+...+ ..++.-++.|....|++|+|.+|++.|..+.+
T Consensus 425 ~~~~d~~~l~~A~~~~~fi~~~l~~~------rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~ 498 (667)
T COG1331 425 RVLGDPEYLEAAERAADFILDNLYVD------RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELAD 498 (667)
T ss_pred HHcCChHHHHHHHHHHHHHHHhhccc------chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 9999999999998742 2222111 111111 12222345788899999999999999999998
Q ss_pred HhhhcCceeecCC----CCCCCC-CCCcccccCCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHH--hhhhhcc
Q 006861 381 IVNSSHTYATGGT----SVGEFW-SDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL--TNGVLGI 453 (628)
Q Consensus 381 ~v~~~~~y~TGG~----g~~E~f-~~~~~L~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~l--yN~ila~ 453 (628)
.+...--=.+||+ +.+|.- ..+... .+.-.++=+++. +.-.-+|-++|||.+|.|..|++| +=+.+..
T Consensus 499 ~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~----~D~a~~S~na~~-~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~~~ 573 (667)
T COG1331 499 EAIADFWDDEGGFYDTPSDSEDLLIRPKEP----TDGATPSGNAVA-AQALLRLSLLTGDARYLEAAEDILQAFAGLAER 573 (667)
T ss_pred HHHHHhcCCCCCcccCCCcccccccCCCCC----CCCCCCCHHHHH-HHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHh
Confidence 8864322233442 112221 111110 011123322322 223445889999999999999999 5555544
Q ss_pred C
Q 006861 454 Q 454 (628)
Q Consensus 454 ~ 454 (628)
.
T Consensus 574 ~ 574 (667)
T COG1331 574 A 574 (667)
T ss_pred C
Confidence 3
No 7
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.07 E-value=9.2e-05 Score=84.13 Aligned_cols=193 Identities=18% Similarity=0.165 Sum_probs=113.5
Q ss_pred cchhhhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh--hhhcc------cccccccc-ccccc--cchHHHHHHHH
Q 006861 245 YYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN--VIKKY------SIERHWQT-LNEEA--GGMNDVLYKLF 313 (628)
Q Consensus 245 yy~~Hki~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~--~~~~~------~~~~~~~~-l~~e~--GGm~~~L~~LY 313 (628)
...+|-|. |+...|..++|+++.+.+.++.|.+.+...+ .+..+ .....|.. .++-. |-+.++|+.-|
T Consensus 60 ~~~g~wl~-a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y 138 (520)
T PF07944_consen 60 HDVGKWLE-AAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYY 138 (520)
T ss_pred CcHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHH
Confidence 34555566 4446788999999999999999999765432 11111 11122332 00001 12447999999
Q ss_pred HHcCCHHHHHHHhhcccccc--cchhhccCCCCCCCcccCCcchhhHHHHHHHHhCChHHHHHHHHHHHHhhhcCceeec
Q 006861 314 CITQDPKHLMLAHLFDKPCF--LGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATG 391 (628)
Q Consensus 314 ~~TGd~ryL~lA~~f~~~~~--~~~~~~~~d~l~g~hanthip~~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TG 391 (628)
+.||+++.|+.|.++.+--. ...+ +.+.........|.=+.++.+.+|++|||++|++.|+.|.+.-.. -.
T Consensus 139 ~~tG~~~~L~v~~k~ad~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~----~~- 211 (520)
T PF07944_consen 139 EATGNERALDVATKLADWVYRRLSRL--GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGF----DP- 211 (520)
T ss_pred HHHCcHHHHHHHHHHHHHHHHHhccC--CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC----CC-
Confidence 99999999999988743110 0110 011111111223444558899999999999999999999884321 00
Q ss_pred CCCCCCCCCCCcccccCCCCCccccchH--HHHHHHHHHhhhccCCchhHHHHHHHHhhhh
Q 006861 392 GTSVGEFWSDPKRLASNLDSNTEESCTT--YNMLKVSRHLFRWTKEIAYADYYERSLTNGV 450 (628)
Q Consensus 392 G~g~~E~f~~~~~L~~~~~~~~~EtCas--~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~i 450 (628)
.+.. ...+.++... ....+..+. .-+..-...+++.|||.+|.+..|+..-|-+
T Consensus 212 ---~~~~-~~~d~~~~~~-a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 212 ---YDLA-YGQDHLPGRH-ANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred ---Cchh-hcCccCCCcc-ccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 0011 1111233321 112222322 3455556789999999999999999886654
No 8
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.06 E-value=0.00035 Score=74.85 Aligned_cols=233 Identities=15% Similarity=0.063 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~ 261 (628)
-|-++.++..+|..|+|+++++.+.++++.+..... . .... +. |-+-..++..|+.
T Consensus 27 ~G~~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~~~----------d~-------~~~g~~~~~~y~~ 82 (336)
T PF07470_consen 27 NGVFWYGLLEAYEYTGDERYLDYAERWADRFIEEDG--S-----DYNL----------DD-------HDIGFLLLDLYER 82 (336)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--T-----TTSC----------CG-------TTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC--C-----ccCC----------ch-------hhhHHHHHHHHHH
Confidence 577788888999999999999999999998887777 3 1100 11 1122233568999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhh-hhccc---cccccccccccccchH-HHHHHHHHHcCCHHHHHHHhhccc---ccc
Q 006861 262 ADNAEALRMTTWMVEYFYNRVQNV-IKKYS---IERHWQTLNEEAGGMN-DVLYKLFCITQDPKHLMLAHLFDK---PCF 333 (628)
Q Consensus 262 tG~~kaL~ia~~~ad~~~~~~~~~-~~~~~---~~~~~~~l~~e~GGm~-~~L~~LY~~TGd~ryL~lA~~f~~---~~~ 333 (628)
||++++++++.+.+|++.+...+. ..... ....+..++.- .|+ ..|+++++.|||++|++.|..-.. ...
T Consensus 83 t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~--~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~ 160 (336)
T PF07470_consen 83 TGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGM--YMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYL 160 (336)
T ss_dssp H-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHH--HHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccc--cccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhc
Confidence 999999999999999887655431 11110 00111111111 245 578999999999999999865321 112
Q ss_pred cchhhccCCCCCCCcccC---Cc-----c-------hhhHHHHHHHHhCC-----hHHHHHHHHHHHHhhhcCceeecCC
Q 006861 334 LGLLALQADDISGFHSNT---HI-----P-------IVIGSQMRYEVTGD-----QLHKTISMFFMDIVNSSHTYATGGT 393 (628)
Q Consensus 334 ~~~~~~~~d~l~g~hant---hi-----p-------~~~G~a~~Y~~TGD-----~~y~~a~~~~~~~v~~~~~y~TGG~ 393 (628)
+++. +.+ ..|..+ .. . .+.|.++.|+...+ +.+++.++.+.+.+.+.+- ..|
T Consensus 161 ~d~~----tGl-~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G-- 232 (336)
T PF07470_consen 161 YDPE----TGL-YYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDG-- 232 (336)
T ss_dssp B-TT----TSS-BESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTS--
T ss_pred cCCC----CCc-eeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCC--
Confidence 2221 111 011111 11 1 24778888988744 4566666666666654322 222
Q ss_pred CCCCCCCCCcccccCCCCCccccchHHHHHHHHHH-h-hhccCCchhHHHHHHHHhhhhhcc-CC
Q 006861 394 SVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRH-L-FRWTKEIAYADYYERSLTNGVLGI-QR 455 (628)
Q Consensus 394 g~~E~f~~~~~L~~~~~~~~~EtCas~~~l~~~~~-L-~~~tgd~~YaD~~Er~lyN~ila~-~~ 455 (628)
.|...-+-|. +..+.||.+|.-...-.-+ + ..+..+.+|.+.+||++ +++... ..
T Consensus 233 ----~w~~~~~~~~--~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~-~~l~~~~~~ 290 (336)
T PF07470_consen 233 ----LWYQDLDDPD--PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKAL-EALLSNAID 290 (336)
T ss_dssp ----BEBSBTTTTT--TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHH-HHHHHCEB-
T ss_pred ----CcceecCCCC--CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH-HHHHhCccC
Confidence 1211111111 2356777776533333322 2 23344678999999987 777776 44
No 9
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.93 E-value=0.00023 Score=75.24 Aligned_cols=182 Identities=12% Similarity=-0.007 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCC
Q 006861 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (628)
Q Consensus 185 ~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~ 264 (628)
.+-++..++.. +|+++.+.+.++++.|.+......++ . .+... ......+..=+++ |..+|+..|+.||+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~-~-~~~~~-----~~~~~G~~hG~aG--i~~~L~~l~~~t~d 157 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPA-L-LWPDF-----DRVDHGLLHGWAG--IALFLLRLYKATGD 157 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccc-c-ccccC-----CCCCCccccCcHH--HHHHHHHHHHHHCC
Confidence 44456666777 99999999999999998776521111 1 11000 0001122222223 66677889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccc-ccc-cccccccccc--chHHHHHHHHHHcCCHHHHHHHhhcccccccchhhcc
Q 006861 265 AEALRMTTWMVEYFYNRVQNVIKKYS-IER-HWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ 340 (628)
Q Consensus 265 ~kaL~ia~~~ad~~~~~~~~~~~~~~-~~~-~~~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~~~ 340 (628)
+++++.+.++.+++.+.+.+....+. ... ......-.+| |+..++.+||+.|+|++|++.|+...+..... .
T Consensus 158 ~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~----~ 233 (321)
T cd04791 158 SRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSS----C 233 (321)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh----h
Confidence 99999999999999876643211110 000 0001112234 78889999999999999999998764321100 0
Q ss_pred CCCCCCCcccCCcchhhH--HHHHHHHhCChHHHHHHHHHHHHhhh
Q 006861 341 ADDISGFHSNTHIPIVIG--SQMRYEVTGDQLHKTISMFFMDIVNS 384 (628)
Q Consensus 341 ~d~l~g~hanthip~~~G--~a~~Y~~TGD~~y~~a~~~~~~~v~~ 384 (628)
...+...|...-++ ....++.++|+.|++.+.+..+.+..
T Consensus 234 ----~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (321)
T cd04791 234 ----YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIA 275 (321)
T ss_pred ----ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhcc
Confidence 01123456665444 34557899999999988888777664
No 10
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.86 E-value=0.00096 Score=70.49 Aligned_cols=178 Identities=15% Similarity=-0.023 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhcccccccccc-cccccc--chHHHHHHHHHHcCCHHHHHHHhh
Q 006861 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQT-LNEEAG--GMNDVLYKLFCITQDPKHLMLAHL 327 (628)
Q Consensus 251 i~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~-l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~ 327 (628)
+..+++..|+. |+++.++++.+.++++.+...+............. ..-.+| |+..+|..||+.|+|++|++.|+.
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~ 166 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEE 166 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 44556677888 99999999999999997654321000000000000 001122 677899999999999999999987
Q ss_pred cccc---cccchhhc---cCCCCCCCcccCCcchhhH--HHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCCCCCC
Q 006861 328 FDKP---CFLGLLAL---QADDISGFHSNTHIPIVIG--SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFW 399 (628)
Q Consensus 328 f~~~---~~~~~~~~---~~d~l~g~hanthip~~~G--~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~E~f 399 (628)
..+. .+...... .++......+-.|....++ ....|+.|+|++|++.++...+.+.... +
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~------------~ 234 (321)
T cd04791 167 ALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC------------Y 234 (321)
T ss_pred HHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh------------c
Confidence 5321 11100000 0000000111233433333 4567899999999998888877765320 1
Q ss_pred CCCcccccCCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHHhhhhhcc
Q 006861 400 SDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI 453 (628)
Q Consensus 400 ~~~~~L~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~ila~ 453 (628)
...+=.|.+.+.+.....+.+.++|.+|.+.+++.. ..++..
T Consensus 235 -----------~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 276 (321)
T cd04791 235 -----------ANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIAT 276 (321)
T ss_pred -----------cCccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhccc
Confidence 112356778888888899999999999999999876 666654
No 11
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.69 E-value=0.00022 Score=77.67 Aligned_cols=231 Identities=16% Similarity=0.108 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCc-ccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 006861 201 LKEKMSAVVSALSACQKEIGSG-YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFY 279 (628)
Q Consensus 201 L~~k~d~~Vd~l~~~Q~~~~dG-Yl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~~kaL~ia~~~ad~~~ 279 (628)
+++.+..+++.|.+.=.....| +.+.++.. ..|++ ..|. +.+++++|+.+|++++.+++.+......
T Consensus 2 ~~~~A~~~~~~l~~~y~~~~~g~~~g~~~~~---------~~~W~--~a~~-~~~~~d~~~~t~d~~y~~~~~~~~~~~~ 69 (370)
T PF03663_consen 2 IKDAAKSAADALQKYYNGNASGNIPGLFPSP---------YYWWW--QAVM-LSALIDYYRRTGDPTYNDLIQNALLNQR 69 (370)
T ss_dssp ------HHHHHHHHHHB-SSTTT-B-SEES-----------H-HH--HHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCCCCCCCC---------CCcCh--HHHH-HHHHHHHHHHhCcchHHHHHHHHHHHHh
Confidence 4566677777776333311123 22322221 12322 4443 4577899999999999999888777765
Q ss_pred HHhhh-hhhccccccccccccccccchHHHHHHHHHHcCCH-----HHHHHHhhccc---ccccchh-hcc----CC---
Q 006861 280 NRVQN-VIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDP-----KHLMLAHLFDK---PCFLGLL-ALQ----AD--- 342 (628)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~~l~~e~GGm~~~L~~LY~~TGd~-----ryL~lA~~f~~---~~~~~~~-~~~----~d--- 342 (628)
..... ..+. ...........+=...++.++|++||++ +||++|+.... ..+.... ..+ ..
T Consensus 70 ~~~~~~~~~~---~~~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~ 146 (370)
T PF03663_consen 70 GPNYDSYNPS---NGSGDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTN 146 (370)
T ss_dssp HHTTSSS--S---------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----
T ss_pred cccccccccc---cccccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccC
Confidence 44311 1110 0000001111111235889999999999 99999987521 1111110 000 00
Q ss_pred -CCCCCcccCCcchhhHHHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCCCCCCCCCcccccCC-CCCccccchHH
Q 006861 343 -DISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNL-DSNTEESCTTY 420 (628)
Q Consensus 343 -~l~g~hanthip~~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~E~f~~~~~L~~~~-~~~~~EtCas~ 420 (628)
.-...-+.+..|.++.++++|++|||+.|++.|+..|+.+.+.+++=. . .+...+. +...- -....++--||
T Consensus 147 ~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~-~----~g~v~Dg-~~~~~~c~~~~~~~~TY 220 (370)
T PF03663_consen 147 SGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDP-S----TGLVYDG-INIDGNCTNINKTKWTY 220 (370)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB---T----TS-B--E-E-TTSSS-B-TT---HH
T ss_pred CCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEEC-C----CcEEEeC-CccCCCCCcCCCceech
Confidence 000001112223346688999999999999999999999876444411 0 0111100 10000 00122333333
Q ss_pred H---HHHHHHHhhhccCCc-hhHHHHHHHHhhhhhcc
Q 006861 421 N---MLKVSRHLFRWTKEI-AYADYYERSLTNGVLGI 453 (628)
Q Consensus 421 ~---~l~~~~~L~~~tgd~-~YaD~~Er~lyN~ila~ 453 (628)
| +|.-+..|++.|++. .|.|..++++ ++++..
T Consensus 221 NqG~~l~a~~~Ly~~T~~~~~yl~~A~~la-~~~~~~ 256 (370)
T PF03663_consen 221 NQGVFLGAAAYLYNATNDEQTYLDRAEKLA-DAAINH 256 (370)
T ss_dssp HHHHHHHHHHHHHHHH--H-HHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHH
Confidence 3 566778899999776 9999999988 555544
No 12
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0033 Score=71.88 Aligned_cols=131 Identities=14% Similarity=0.010 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhh-hhcccccccccc--ccccccchHHHHHHHHHHcCCHHHHHHHhh
Q 006861 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNV-IKKYSIERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAHL 327 (628)
Q Consensus 251 i~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~-~~~~~~~~~~~~--l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~ 327 (628)
+..+|..+++++|+++++++|++.++++.+.+... +.....++.-.. +-+...-+..+|..||++|+|.+||+.|..
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~ 495 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIE 495 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 56688889999999999999999999998766431 000000110000 000001123688999999999999999988
Q ss_pred ccccc---ccchhhcc--------CCCC--CCCcccCCcchh-----hHHHHHHHHhCChHHHHHHHHHHHHh
Q 006861 328 FDKPC---FLGLLALQ--------ADDI--SGFHSNTHIPIV-----IGSQMRYEVTGDQLHKTISMFFMDIV 382 (628)
Q Consensus 328 f~~~~---~~~~~~~~--------~d~l--~g~hanthip~~-----~G~a~~Y~~TGD~~y~~a~~~~~~~v 382 (628)
+.++. |.++. .+ .+.+ ...-...-+|.. ....++-++|||..|.+.++.....+
T Consensus 496 L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~ 567 (667)
T COG1331 496 LADEAIADFWDDE-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAF 567 (667)
T ss_pred HHHHHHHHhcCCC-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 74321 22221 11 0000 000112233332 23445579999999998877655443
No 13
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.30 E-value=0.013 Score=70.30 Aligned_cols=215 Identities=13% Similarity=0.005 Sum_probs=128.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCCHHH
Q 006861 188 ASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEA 267 (628)
Q Consensus 188 alA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~~ka 267 (628)
++.+++..++|+.+++.+.++++.+.+... .+..++.. ... +| +...|+..|+.++++++
T Consensus 549 ~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~--~~~~~D~~------------~G~----aG--ii~~Ll~l~~~~~~~~~ 608 (825)
T cd04792 549 ALTHLGKLLKDDRLLNLAKEILDLIDELIE--KDEKLDFI------------SGA----AG--LILVLLSLYELFLSERF 608 (825)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhc--cccCCCEe------------eec----HH--HHHHHHHHHhccCChHH
Confidence 345556678999999999999988876544 22211111 001 11 34456678999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccccccc--chHHHHHHHHHHcCCHHHHHHHhhccc---ccc-----cchh
Q 006861 268 LRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK---PCF-----LGLL 337 (628)
Q Consensus 268 L~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~~---~~~-----~~~~ 337 (628)
++++.+.++++.+...+...............-.+| |+..+|..||+.|+|++|++.|+...+ ..+ .|+
T Consensus 609 l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~- 687 (825)
T cd04792 609 LDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWP- 687 (825)
T ss_pred HHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCC-
Confidence 999999999987543221100000000000111234 788999999999999999999876532 111 111
Q ss_pred hccCCCCCCCcccCCcchhhH--HHHHHHH--hCChHHHHHHHHHHHHhhhcCceeecCCCCCCCCCCCcccccCCCCCc
Q 006861 338 ALQADDISGFHSNTHIPIVIG--SQMRYEV--TGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNT 413 (628)
Q Consensus 338 ~~~~d~l~g~hanthip~~~G--~a~~Y~~--TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~E~f~~~~~L~~~~~~~~ 413 (628)
. ..+.. ..-+-.|...-++ ....++. .+|+.+.+.+....+.+... | +. ...
T Consensus 688 ~-~~~~~-~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~-----~-------~~----------~~~ 743 (825)
T cd04792 688 R-KDGNS-FSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKE-----G-------FG----------NNH 743 (825)
T ss_pred C-cCcCC-CCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh-----c-------CC----------CCC
Confidence 0 00000 0112234554333 4456777 57888877666665554321 0 00 113
Q ss_pred cccchHHHHHHHHHHhhhccCCchhHHHHHHHHh
Q 006861 414 EESCTTYNMLKVSRHLFRWTKEIAYADYYERSLT 447 (628)
Q Consensus 414 ~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~ly 447 (628)
+=+|...+.+.+...+.+.++|.+|.+.+++.+-
T Consensus 744 slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~ 777 (825)
T cd04792 744 SLCHGDLGNLEILLYAAKAFGDEKLQELANSLAI 777 (825)
T ss_pred eecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3567778888888889999999999988887753
No 14
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=97.29 E-value=0.0047 Score=66.35 Aligned_cols=251 Identities=16% Similarity=0.143 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhc-CCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYT 260 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~ 260 (628)
-|..|-..|.+|. +++++.++.++.-++.|.+.-... ..||+....... . ... --..|..-.++.|+.. +.
T Consensus 23 q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~---~~~-~~~~Y~~af~l~ala~-~~ 94 (346)
T PF07221_consen 23 QARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--P---LDP-QKDLYDQAFALLALAE-AR 94 (346)
T ss_dssp HHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--E---EE---EEHHHHHHHHHHHHH-HH
T ss_pred eHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--C---Ccc-ccchHHHHHHHHHHHH-HH
Confidence 5778888888887 889999999999999998877411 345654332210 0 000 0124555557778744 89
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhhhh-hccc--cccccccc---cccccchHHHHHHHHHHcCCHHHHHHHhhccc---c
Q 006861 261 YADNAEALRMTTWMVEYFYNRVQNVI-KKYS--IERHWQTL---NEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK---P 331 (628)
Q Consensus 261 ~tG~~kaL~ia~~~ad~~~~~~~~~~-~~~~--~~~~~~~l---~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~---~ 331 (628)
.||++++++.|.++.+++.+++.... +.+. ..+.+... +.- -=+.+++..||+.|+|++|++.|+.+.+ .
T Consensus 95 ~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~-mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~ 173 (346)
T PF07221_consen 95 ATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPH-MHLLEAFLALYEATGDPRYLDRAEELLDLFLD 173 (346)
T ss_dssp CTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChh-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988874321 1110 11111111 110 0012577889999999999999876532 1
Q ss_pred cccchh------hccCC--CCC-CCcccCCcc--hhhHH-------HHHHH---HhCChHHHHHHHHHHHHhhhcCceee
Q 006861 332 CFLGLL------ALQAD--DIS-GFHSNTHIP--IVIGS-------QMRYE---VTGDQLHKTISMFFMDIVNSSHTYAT 390 (628)
Q Consensus 332 ~~~~~~------~~~~d--~l~-g~hanthip--~~~G~-------a~~Y~---~TGD~~y~~a~~~~~~~v~~~~~y~T 390 (628)
.|..+. ....| .+. +.+..+-.+ +-.|| ...+. ..+++.+++.++..++...+.-.-..
T Consensus 174 ~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~ 253 (346)
T PF07221_consen 174 RFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDRE 253 (346)
T ss_dssp TCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTT
T ss_pred HHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecC
Confidence 121111 00110 000 000000000 22343 22233 45777888877777776653222222
Q ss_pred cCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHH
Q 006861 391 GGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL 446 (628)
Q Consensus 391 GG~g~~E~f~~~~~L~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~l 446 (628)
|| |-.-. .+.. +......--.-...+.|+-+-.++++|||.+|.+.++++.
T Consensus 254 ~g-G~~~~-~d~~---g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~ 304 (346)
T PF07221_consen 254 GG-GLFYS-VDRD---GKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVW 304 (346)
T ss_dssp TS-SB-SE-EETT---S-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred CC-eEEEE-EeCC---CCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 32 21100 0000 1111222334556777777788999999999999988876
No 15
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.0012 Score=72.29 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhh-hHHHHHHHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK-ILAGLLDQYT 260 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hk-i~aGLl~~Y~ 260 (628)
.||-++|+--.+..|+...+.+.+.++.|.|...-. +-.. =.+.|++|- |+.+|+..|+
T Consensus 133 aghLieg~va~~qaTGkr~lldV~~rlADhi~tvfg--------p~~~------------q~~g~~gH~eielAl~~Ly~ 192 (589)
T COG3533 133 AGHLIEGGVAAHQATGKRRLLDVVCRLADHIATVFG--------PEED------------QVPGYCGHPEIELALAELYR 192 (589)
T ss_pred hHHHHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcC--------cccc------------ccccccCCCchhHHHHHHHH
Confidence 689999999999999999999999999999875543 1100 124566775 7889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchH-------HHHHHHHHHcCCHHHHHHHhhccc
Q 006861 261 YADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMN-------DVLYKLFCITQDPKHLMLAHLFDK 330 (628)
Q Consensus 261 ~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~-------~~L~~LY~~TGd~ryL~lA~~f~~ 330 (628)
.||++++|+++++|.++-.. .+.-++ ..+ .+ ||+. ..+++||++|||+.+...+.+|.+
T Consensus 193 ~Tg~~rYL~LA~~Fi~~rg~--~P~~~r-g~e-------~~-~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~ 258 (589)
T COG3533 193 LTGDQRYLDLARRFIHQRGV--EPLAQR-GDE-------LE-GGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQ 258 (589)
T ss_pred HhcChHHHHHHHHHHHHhcc--ChhhcC-chh-------hh-hhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999887421 121110 001 11 3332 367899999999999999999854
No 16
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.13 E-value=0.047 Score=57.53 Aligned_cols=225 Identities=15% Similarity=0.048 Sum_probs=132.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhh----cCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHH
Q 006861 186 LSASALMWASTHNESLKEKMSAVVSALSACQKE----IGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (628)
Q Consensus 186 LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~----~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~ 261 (628)
+-++..++..++|+++.+.+.++++.+.+.-.. ...+++. .. ++ +...|+..|+.
T Consensus 56 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---------------G~----aG--~~~~ll~~~~~ 114 (343)
T cd04434 56 AYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLS---------------GL----AG--LLLALLLLYKT 114 (343)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceee---------------ch----HH--HHHHHHHHHHh
Confidence 334555556789999999999999887765320 0111111 11 11 44556678888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccc---ccccc-ccccccc--chHHHHHHHHHHcCCHHHHHHHhhccc---cc
Q 006861 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSI---ERHWQ-TLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK---PC 332 (628)
Q Consensus 262 tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~---~~~~~-~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~~---~~ 332 (628)
++++..++++.+.++++.+...+....... ..... ...-.+| |+..+|..+|+.+.++.+.++++.... ..
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (343)
T cd04434 115 FGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRL 194 (343)
T ss_pred cCCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHc
Confidence 899999999999999997765432111100 00000 0111233 777899999999988888887765421 11
Q ss_pred c-----cchhhccCCCCCCCcccCCcch--hhHHHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCCCCCCCCCccc
Q 006861 333 F-----LGLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRL 405 (628)
Q Consensus 333 ~-----~~~~~~~~d~l~g~hanthip~--~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~E~f~~~~~L 405 (628)
+ .++.....+.......-.|... .......|+.++|+.+.+.++...+.+..+... +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------- 258 (343)
T cd04434 195 QDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLL--------E-------- 258 (343)
T ss_pred cCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc--------c--------
Confidence 1 0100000000011112234443 333566789999999988877766655432110 0
Q ss_pred ccCCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHHhhhhhc
Q 006861 406 ASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG 452 (628)
Q Consensus 406 ~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~ila 452 (628)
....+=.|...+.+....++.+.+++.+|.+..++.. +.++.
T Consensus 259 ----~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~ 300 (343)
T cd04434 259 ----LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLIS 300 (343)
T ss_pred ----CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHH
Confidence 1234556778888999999999999999998876665 45443
No 17
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.93 E-value=0.0093 Score=64.05 Aligned_cols=185 Identities=19% Similarity=0.185 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhc-CCcccccCCchhhhhhhhcCCcccc----cchhhhhHHHHHHH
Q 006861 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAP----YYTIHKILAGLLDQ 258 (628)
Q Consensus 184 ~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~-~dGYl~~~~~~~~~r~~~~~~~w~p----yy~~Hki~aGLl~~ 258 (628)
-.|-|+|. +..++|++.++.+++.++.|.+.-... ..||...++. .|.+ .-.+|++++- ++.
T Consensus 85 f~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~-----------~~~~~r~~n~~mhl~eA~-l~l 151 (346)
T PF07221_consen 85 FALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDP-----------DWSPPRGQNPHMHLLEAF-LAL 151 (346)
T ss_dssp HHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETT-----------TSSCBEEHHHHHHHHHHH-HHH
T ss_pred HHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCC-----------ccccCCCCChhHHHHHHH-HHH
Confidence 35777888 678999999999999999998775411 2344433322 1221 1125667655 589
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhhhhhcccc---cccccccc------------ccccchH----HHHHHHH--HHcC
Q 006861 259 YTYADNAEALRMTTWMVEYFYNRVQNVIKKYSI---ERHWQTLN------------EEAGGMN----DVLYKLF--CITQ 317 (628)
Q Consensus 259 Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~---~~~~~~l~------------~e~GGm~----~~L~~LY--~~TG 317 (628)
|+++|+++.++.+.++++.+.+++-....+... ...|.++. .+- |++ ..|.++. ...+
T Consensus 152 ~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~p-GH~~E~~wll~~~~~~~~~~ 230 (346)
T PF07221_consen 152 YEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEP-GHDFEWAWLLLEAARLTGRG 230 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-H-HHHHHHHHHHHHHHHHCHCT
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCC-chhHHHHHHHHHHHHhcccc
Confidence 999999999999999999998665321111100 11122221 111 343 2445555 3458
Q ss_pred CHHHHHHHhhcccccc---cchhhccCCCCCCCcccCCcc-----------hhhHHHHHHHHhCChHHHHHHHHHHHHhh
Q 006861 318 DPKHLMLAHLFDKPCF---LGLLALQADDISGFHSNTHIP-----------IVIGSQMRYEVTGDQLHKTISMFFMDIVN 383 (628)
Q Consensus 318 d~ryL~lA~~f~~~~~---~~~~~~~~d~l~g~hanthip-----------~~~G~a~~Y~~TGD~~y~~a~~~~~~~v~ 383 (628)
++++++.|..+..... .++...+- ......+.+.+ ...+.+..|+.|||+.|++.++..|+.+.
T Consensus 231 ~~~~~~~a~~l~~~~~~~G~d~~~gG~--~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~ 308 (346)
T PF07221_consen 231 DPDWLERARRLFDFALEHGWDREGGGL--FYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIF 308 (346)
T ss_dssp -HTHHHHHHHHHHHHHHHHBSTTTSSB---SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHheEecCCCeE--EEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 8899988866522110 11100000 00000111111 13578889999999999999999999876
Q ss_pred h
Q 006861 384 S 384 (628)
Q Consensus 384 ~ 384 (628)
+
T Consensus 309 ~ 309 (346)
T PF07221_consen 309 R 309 (346)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=96.82 E-value=0.014 Score=57.55 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=91.5
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCc-h-hhhhhhhcCCcccccchhhhh-HHHH
Q 006861 179 GHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPT-E-QFDRLEALIPVWAPYYTIHKI-LAGL 255 (628)
Q Consensus 179 Gh~~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~-~-~~~r~~~~~~~w~pyy~~Hki-~aGL 255 (628)
+..-|+-||.++.+|..|+|+++.+.+++.++-+..--+ +.|-+..+.. . .++.+....... -.+||.. +.||
T Consensus 29 amaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~~~wyeEYp~~p~s~--VLNGfiysL~GL 104 (189)
T PF06662_consen 29 AMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNKYPWYEEYPTTPPSY--VLNGFIYSLIGL 104 (189)
T ss_pred HHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCCcEeEeecCCCCCCE--EeehHHHHHHHH
Confidence 444699999999999999999999999999988876665 5565544322 1 122221111211 2355554 7899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhcccccccccc-------------cc--ccccchHHHHHHHHHHcCCHH
Q 006861 256 LDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQT-------------LN--EEAGGMNDVLYKLFCITQDPK 320 (628)
Q Consensus 256 l~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~-------------l~--~e~GGm~~~L~~LY~~TGd~r 320 (628)
-|.+..+++++|.++-.+-.+=+.+.+.. +.. +.|.. +. .-+..+..-|.+||.+|||+.
T Consensus 105 yd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~----yD~-G~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d~~ 179 (189)
T PF06662_consen 105 YDYYRLTGDEEAKELFDKGLKSLKKMLPL----YDT-GSWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGDPI 179 (189)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHh----hhc-CCCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCCHH
Confidence 89999999999887766666655444322 111 11110 00 011123457889999999999
Q ss_pred HHHHHhhcc
Q 006861 321 HLMLAHLFD 329 (628)
Q Consensus 321 yL~lA~~f~ 329 (628)
+.+.|+++.
T Consensus 180 f~~~a~rW~ 188 (189)
T PF06662_consen 180 FKEYAERWK 188 (189)
T ss_pred HHHHHHHhc
Confidence 999998763
No 19
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.56 E-value=0.085 Score=56.71 Aligned_cols=191 Identities=13% Similarity=0.043 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhc-CCcccccchhhhhHHHHHHHHHH
Q 006861 184 HYLSASALMWASTHN-ESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEAL-IPVWAPYYTIHKILAGLLDQYTY 261 (628)
Q Consensus 184 ~~LsalA~~ya~t~D-~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~-~~~w~pyy~~Hki~aGLl~~Y~~ 261 (628)
=++.++..++..+++ +.+.+.++++++.+.+.-+...+......+. .+ .|.+. .-.|..=.++ |...|+..+..
T Consensus 105 G~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~-~~-~~~~~~~~G~aHG~aG--I~~~L~~~~~~ 180 (343)
T cd04794 105 GYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPL-MY-EWHGKEYLGAAHGLAG--ILYILLQTPLF 180 (343)
T ss_pred HHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCc-cc-cccCceecchhhhHHH--HHHHHHhhhhh
Confidence 367777777777763 4567788888877666522112222111111 00 01100 0122221222 55667778888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccc--cc--cccccccccc--chHHHHHHHHHHcCCHHHHHHHhhcccccccc
Q 006861 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSI--ER--HWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLG 335 (628)
Q Consensus 262 tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~--~~--~~~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~ 335 (628)
+++++.++.+.+..+++.+...+. ..++. +. ......-.+| |+...+..+|+.++|+++.+.++...+..+
T Consensus 181 ~~~~~~~~~i~~~i~~~~~~~~~~-g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 257 (343)
T cd04794 181 LLKPSLAPLIKRSLDYLLSLQFPS-GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIW-- 257 (343)
T ss_pred cCCccHHHHHHHHHHHHHHhhccC-CCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--
Confidence 899999999999999997653211 11110 00 0011112345 788899999999999999998877533211
Q ss_pred hhhccCCCCCCCcccCCcc--hhhHHHHHHHHhCChHHHHHHHHHHHHhhhc
Q 006861 336 LLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNSS 385 (628)
Q Consensus 336 ~~~~~~d~l~g~hanthip--~~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~ 385 (628)
... ....-+...|.- +..+....|+.|+|+.|++.+..+.+.+.++
T Consensus 258 ~~g----~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 258 KRG----LLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred HhC----CccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 000 000012234444 3455778899999999999999998887754
No 20
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.53 E-value=0.039 Score=62.62 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhcccc-----------cccc---ccccccccchHHHHHHHHHHc
Q 006861 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSI-----------ERHW---QTLNEEAGGMNDVLYKLFCIT 316 (628)
Q Consensus 251 i~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~-----------~~~~---~~l~~e~GGm~~~L~~LY~~T 316 (628)
++.||+.+|..+|++.+|+.|..++|.+..-|.. ..+.+. ...| ...-.|.|.+.+-+..|.++|
T Consensus 160 ~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdT-ptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lT 238 (522)
T PTZ00470 160 VLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNE-DTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEIT 238 (522)
T ss_pred hHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhh
Confidence 5789999999999999999999999999877742 111110 0011 111235666667788999999
Q ss_pred CCHHHHHHHhhcc
Q 006861 317 QDPKHLMLAHLFD 329 (628)
Q Consensus 317 Gd~ryL~lA~~f~ 329 (628)
||++|.+.|++..
T Consensus 239 Gd~kY~~~a~~i~ 251 (522)
T PTZ00470 239 GDPKYAEYVDKVM 251 (522)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998763
No 21
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.48 E-value=0.14 Score=55.05 Aligned_cols=226 Identities=12% Similarity=-0.046 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-HhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcC
Q 006861 185 YLSASALMWASTHNESLKEKMSAVVSALSAC-QKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYAD 263 (628)
Q Consensus 185 ~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~-Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG 263 (628)
.+..+..++..++|+++.+.+.+.++.+.+. .....++.. + + +.+. +| ++.+|+..|+.++
T Consensus 57 i~~~l~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d----~--l~G~-----aG--~l~~Ll~l~~~~~ 118 (343)
T cd04794 57 VYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPD-----E----L--LYGR-----AG--YLYALLFLNKKFG 118 (343)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcccCCch-----h----h--hccH-----HH--HHHHHHHHHHHcC
Confidence 3444666777899999999998888877543 220011100 0 0 0000 11 4456678888888
Q ss_pred C-HHHHHHHHHHHHHHHHHhhhhhhcc--cccccc--c---ccccccc--chHHHHHHHHHHcCCHHHHHHHhhccc---
Q 006861 264 N-AEALRMTTWMVEYFYNRVQNVIKKY--SIERHW--Q---TLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK--- 330 (628)
Q Consensus 264 ~-~kaL~ia~~~ad~~~~~~~~~~~~~--~~~~~~--~---~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~~--- 330 (628)
+ +.+++.+.+.++.+.+......... ..+..| . .+.-.+| |+..+|..+|+.++++++++.++...+
T Consensus 119 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~ 198 (343)
T cd04794 119 FKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLL 198 (343)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHH
Confidence 3 3455666676666544321111000 000111 0 0112234 677889999999999999998876421
Q ss_pred -c---cccchhhccCCCCCCCcccCCcch--hhHHHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCCCCCCCCCcc
Q 006861 331 -P---CFLGLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKR 404 (628)
Q Consensus 331 -~---~~~~~~~~~~d~l~g~hanthip~--~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~E~f~~~~~ 404 (628)
. .-.++...+.+.-....+-.|... .......|++++|+.+++.++..-+.+.++.
T Consensus 199 ~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------ 260 (343)
T cd04794 199 SLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRG------------------ 260 (343)
T ss_pred HhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC------------------
Confidence 0 011111111000000011234443 3335577899999999988877666554221
Q ss_pred cccCCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHHhhh
Q 006861 405 LASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNG 449 (628)
Q Consensus 405 L~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~ 449 (628)
+.. ...+=.|...+.....-+|++.+++.+|.+...+.+=..
T Consensus 261 ~~~---~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~ 302 (343)
T cd04794 261 LLK---KGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFL 302 (343)
T ss_pred Ccc---CCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 110 112334555566677778999999999999877666433
No 22
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.44 E-value=0.11 Score=54.76 Aligned_cols=188 Identities=14% Similarity=-0.033 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCC
Q 006861 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (628)
Q Consensus 185 ~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~ 264 (628)
.+.++...+..++|+...+.+..+++.+.+.+....+++-..... ..+ .....|..=..+ |...|...++.+.+
T Consensus 104 ~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~---~~~~g~~HG~~G--i~~~l~~~~~~~~~ 177 (343)
T cd04434 104 LLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYF-PEG---RVNLGLAHGLAG--ILLALLLLYKKTVD 177 (343)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeec-cCC---ccccchhhhhHH--HHHHHHHHHHhcCC
Confidence 344455566678899999999999999998887333333211000 000 011122222222 56666678888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccc----cccccccccccc--chHHHHHHHHHHcCCHHHHHHHhhcccccccchhh
Q 006861 265 AEALRMTTWMVEYFYNRVQNVIKKYSI----ERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLA 338 (628)
Q Consensus 265 ~kaL~ia~~~ad~~~~~~~~~~~~~~~----~~~~~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~ 338 (628)
++..+++....++..+.+......++. ........-.+| |+..++.++|+.|+|+++++.++...........
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (343)
T cd04434 178 KSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGL- 256 (343)
T ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhh-
Confidence 888888877777665443211000000 000001112344 7889999999999999999998765332110100
Q ss_pred ccCCCCCCCcccCCcchh--hHHHHHHHHhCChHHHHHHHHHHHHhh
Q 006861 339 LQADDISGFHSNTHIPIV--IGSQMRYEVTGDQLHKTISMFFMDIVN 383 (628)
Q Consensus 339 ~~~d~l~g~hanthip~~--~G~a~~Y~~TGD~~y~~a~~~~~~~v~ 383 (628)
. + ...+...|...- ......|+.|+|+.+++.+..+...+.
T Consensus 257 -~-~--~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~ 299 (343)
T cd04434 257 -L-E--LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLI 299 (343)
T ss_pred -c-c--CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 0 0 112334555543 446677999999999988877766544
No 23
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.39 E-value=0.18 Score=60.68 Aligned_cols=219 Identities=14% Similarity=0.121 Sum_probs=122.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcc----cccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCC
Q 006861 189 SALMWASTHNESLKEKMSAVVSALSACQKEIGSGY----LSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (628)
Q Consensus 189 lA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGY----l~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~ 264 (628)
+++++..++|+.+++.+.+.++.+.+.-+ .++. ++.+. .++. +...+...|+.+++
T Consensus 500 l~~l~~~t~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~gl~~------------G~aG------i~~~L~~l~~~~~~ 559 (825)
T cd04792 500 LAYLGQLTGDERYTRLARKILDSLVKSLS--ELKTDDTGIGAFS------------GLGG------ILYALTHLGKLLKD 559 (825)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHh--cccccccCceeEe------------chhH------HHHHHHHHHHHcCC
Confidence 33444578999999999998888776644 2110 01110 0111 33344567888999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccchhhccCCCC
Q 006861 265 AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDI 344 (628)
Q Consensus 265 ~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~~~~d~l 344 (628)
+++++.+.+.++.+.+.... . .....++.. .|+..+|..||+.|++++++++|....+.-. .. ....+..
T Consensus 560 ~~~~~~a~~~~~~l~~~~~~------~-~~~D~~~G~-aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~-~~-~~~~~~~ 629 (825)
T cd04792 560 DRLLNLAKEILDLIDELIEK------D-EKLDFISGA-AGLILVLLSLYELFLSERFLDLALKCGDHLL-EN-ASNEDGG 629 (825)
T ss_pred HHHHHHHHHHHHHHHHhhcc------c-cCCCEeeec-HHHHHHHHHHHhccCChHHHHHHHHHHHHHH-Hh-hhhccCC
Confidence 99999999888877543211 0 001111111 2566889999999999999999877533211 00 0000000
Q ss_pred ------CCCcccCCcchh--hHHHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCCCCCCCCCcccccCCCCCcccc
Q 006861 345 ------SGFHSNTHIPIV--IGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEES 416 (628)
Q Consensus 345 ------~g~hanthip~~--~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~E~f~~~~~L~~~~~~~~~Et 416 (628)
.....-.|...- ...+..|+.|+|+.|+++++...+... .+ +..++ ..|..+. .. .....=+
T Consensus 630 ~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~-~~-~~~~~----~~w~~~~--~~--~~~~~WC 699 (825)
T cd04792 630 IGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYER-RL-FSEEG----WNWPRKD--GN--SFSAAWC 699 (825)
T ss_pred cccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-Hh-cCHhh----cCCCCcC--cC--CCCCccc
Confidence 000112333322 235667899999999998888887543 12 11111 1121110 00 0111223
Q ss_pred chHHHHHHHHHHhhhc--cCCchhHHHHHHHHh
Q 006861 417 CTTYNMLKVSRHLFRW--TKEIAYADYYERSLT 447 (628)
Q Consensus 417 Cas~~~l~~~~~L~~~--tgd~~YaD~~Er~ly 447 (628)
..+.+.+.....+.+. ..|..+.+.+++++-
T Consensus 700 hG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~ 732 (825)
T cd04792 700 HGAPGILLARLELLKFNDLDDEELKEEIEIALK 732 (825)
T ss_pred CCcHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3445666666677777 578888888888763
No 24
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.29 E-value=0.034 Score=65.02 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcC-CcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHH
Q 006861 183 GHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (628)
Q Consensus 183 G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~-dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~ 261 (628)
+-++-|++..++.++|..+.+.+.+.|..|..+-++.. -+|++.- .+ +..-|+..|+.
T Consensus 699 ~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl---------------~g------~i~~L~~iYk~ 757 (963)
T COG4403 699 SGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGL---------------AG------VICVLVSIYKL 757 (963)
T ss_pred chhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhcc---------------HH------HHHHHHHHHhh
Confidence 34666788888899999999999999999988866332 2333221 11 33445689999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc--chHHHHHHHHHHcCCHHHHHHHhhc
Q 006861 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 262 tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f 328 (628)
+..++.|++|...++.+++..-... +.....+.-.+| |+..+|..||+.|||++|+..++..
T Consensus 758 ~~epk~l~~ais~~~~l~~~~v~~d-----~s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 758 TDEPKFLELAISLGRILMEKIVGND-----SSETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred ccchHHHHHHHHHHHHHHHHhhccc-----cccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999999986542211 100011123344 7778999999999999999998764
No 25
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.25 E-value=0.077 Score=56.24 Aligned_cols=188 Identities=15% Similarity=0.075 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHHhhccc
Q 006861 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (628)
Q Consensus 251 i~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~ 330 (628)
.+-|+..+|++||++++|+.++..+|....+=+ ++... ++... +...|+-||+.|||++||++|....+
T Consensus 41 ~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g--~~~~~-------id~i~--~g~~L~~L~e~T~~~~Yl~~a~~~a~ 109 (357)
T COG4225 41 FLYGVARAYEATGDAEYLDYLKTWFDEQIDEGG--LPPRN-------IDHIA--AGLTLLPLYEQTGDPRYLEAAIKLAS 109 (357)
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCC--CCccc-------hhhhc--cCceeeehhhhhCCHHHHHHHHHHHH
Confidence 346888999999999999999988887754311 11111 11110 11478899999999999999877633
Q ss_pred ccccchhhccCCCCCCCcccCCcc-------hhhH---HHHHHHHhCChHHHH-HHHHHHHHhhhcCceeecCCCCCCCC
Q 006861 331 PCFLGLLALQADDISGFHSNTHIP-------IVIG---SQMRYEVTGDQLHKT-ISMFFMDIVNSSHTYATGGTSVGEFW 399 (628)
Q Consensus 331 ~~~~~~~~~~~d~l~g~hanthip-------~~~G---~a~~Y~~TGD~~y~~-a~~~~~~~v~~~~~y~TGG~g~~E~f 399 (628)
.-.-.+ +....++..-..-| +.+| .++.-+++|+++|.+ +.+.|+..+..-+==.||=.= ..|
T Consensus 110 ~l~~~~----Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~Y--H~w 183 (357)
T COG4225 110 WLVHEP----RTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYY--HGW 183 (357)
T ss_pred HHhhCc----ccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceE--Eee
Confidence 111111 00011111011112 2344 455669999999975 778888766422222233221 112
Q ss_pred CCCcccccCCC--C-----CccccchHHHHHHHHHHhhhccCCchhHHHHHHHHhhhhhccCC
Q 006861 400 SDPKRLASNLD--S-----NTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQR 455 (628)
Q Consensus 400 ~~~~~L~~~~~--~-----~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~ila~~~ 455 (628)
.+....|-..+ . +-+-...++.+..+.+.|=.-.++..+..-.=|.+--+|+.-|+
T Consensus 184 d~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd 246 (357)
T COG4225 184 DEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD 246 (357)
T ss_pred ccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 22111111001 1 12345677788887777777666555544444444455555554
No 26
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=96.24 E-value=0.034 Score=62.32 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhhhhhccc-----cc----ccc---ccccccccchHHHHHHHHHHc
Q 006861 251 ILAGLLDQYTYA--DNAEALRMTTWMVEYFYNRVQNVIKKYS-----IE----RHW---QTLNEEAGGMNDVLYKLFCIT 316 (628)
Q Consensus 251 i~aGLl~~Y~~t--G~~kaL~ia~~~ad~~~~~~~~~~~~~~-----~~----~~~---~~l~~e~GGm~~~L~~LY~~T 316 (628)
++.||+.+|..+ +++.+|+.|+.+||.+..-|.. ..+.+ .. ..+ ...-.|.|.+..-+.+|.++|
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t-~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lT 160 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDT-PTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLT 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSS-SSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccC-CCccccceeeecccCCCCCCCCcccccccccceechhHHHHHh
Confidence 678999999999 9999999999999998776632 11111 10 001 011135567777889999999
Q ss_pred CCHHHHHHHhhccccc--------ccchhhccCCCCCCCcccCCcchh-------hHHHHHHHHhC--ChHHHHHHHHHH
Q 006861 317 QDPKHLMLAHLFDKPC--------FLGLLALQADDISGFHSNTHIPIV-------IGSQMRYEVTG--DQLHKTISMFFM 379 (628)
Q Consensus 317 Gd~ryL~lA~~f~~~~--------~~~~~~~~~d~l~g~hanthip~~-------~G~a~~Y~~TG--D~~y~~a~~~~~ 379 (628)
||++|.+.|++..+.- ..+-....-|...+.....++-+. +=..+.|.++| |+.|++.-....
T Consensus 161 gd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~ 240 (452)
T PF01532_consen 161 GDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAV 240 (452)
T ss_dssp S-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHH
Confidence 9999999998863210 111000011111121111111111 22567789999 888888777777
Q ss_pred HHhhhcCceeecCCCCCC--CCCCCcc--ccc-CCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHHhhhh
Q 006861 380 DIVNSSHTYATGGTSVGE--FWSDPKR--LAS-NLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGV 450 (628)
Q Consensus 380 ~~v~~~~~y~TGG~g~~E--~f~~~~~--L~~-~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~i 450 (628)
+.+. +|+......-..+ .|-.... ... ..+....-+|-.-+|+.+..+++. +.++.+..++......
T Consensus 241 ~~i~-~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~---~~~~~~~A~~l~~~C~ 312 (452)
T PF01532_consen 241 DAIK-KHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFN---DEGDLELAEELTETCY 312 (452)
T ss_dssp HHHH-HHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTT---CHHHHHHHHHHHHHHH
T ss_pred HHHH-HHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccC---chhHHHHHHHHHHHHH
Confidence 7765 3444432221111 1111000 000 012445688999999999999983 3555665555544433
No 27
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.13 E-value=0.029 Score=60.06 Aligned_cols=131 Identities=15% Similarity=-0.020 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHhhcccccccchhhccCCCCCCCcccCCcchhhHHHHHHHHhCChHHHHHHHHHHH-Hhh
Q 006861 305 MNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMD-IVN 383 (628)
Q Consensus 305 m~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~~~~d~l~g~hanthip~~~G~a~~Y~~TGD~~y~~a~~~~~~-~v~ 383 (628)
.-.+|..+|+.|||++|++.|+.+.+... +.... .+...++.+.......|+.|||++|++++....+ .+.
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~-~~~~~-------~~~~d~~~~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~ 101 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFI-EEDGS-------DYNLDDHDIGFLLLDLYERTGDEKYKDAAIQAADWLLA 101 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHT-------TTSCCGTTHHHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hccCC-------ccCCchhhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44678899999999999999987644322 11110 1112223334445778999999999999999999 554
Q ss_pred hcCceeecCCCCCCCCCCCcccccCCCCCccccchHHH-HHHHHHHhhhccCCchhHHHHHHHHhhhhhccCC
Q 006861 384 SSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYN-MLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQR 455 (628)
Q Consensus 384 ~~~~y~TGG~g~~E~f~~~~~L~~~~~~~~~EtCas~~-~l~~~~~L~~~tgd~~YaD~~Er~lyN~ila~~~ 455 (628)
+..--..||+...+. ....--|-+.- .+-+.-++...|||.+|.|.+.+-+-...--..+
T Consensus 102 ~~~~~~~G~~~~~~~------------~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d 162 (336)
T PF07470_consen 102 RRPRTSDGGFWHNRP------------YPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYD 162 (336)
T ss_dssp TSCBECTGCBECTTT------------STTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-
T ss_pred hCCCCCCCccccCCC------------CCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccC
Confidence 332224565543111 00111122221 2334455688999999999888776544433333
No 28
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.03 E-value=0.26 Score=56.00 Aligned_cols=258 Identities=14% Similarity=0.092 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCccc-c------cchhhhhHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWA-P------YYTIHKILAG 254 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~-p------yy~~Hki~aG 254 (628)
.-++|.++--+|..++|+.|.+|+.++.|.|..+-+. +.|. |++.-.+..-......|. + .-++. ++.
T Consensus 157 tIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdT-ptgi--P~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~-LEF- 231 (522)
T PTZ00470 157 TIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNE-DTGF--PASEINLATGRKSYPGWAGGCSILSEVGTLQ-LEF- 231 (522)
T ss_pred ehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-CCCC--CcceeecccCCCCCcccCCCccchhhhhhHH-HHH-
Confidence 4567777777788899999999999999999988752 5553 221100000001112232 1 11111 121
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhcc-c-----cccccccccccccchH----HHHHHHHHHcC--CHHHH
Q 006861 255 LLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKY-S-----IERHWQTLNEEAGGMN----DVLYKLFCITQ--DPKHL 322 (628)
Q Consensus 255 Ll~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~-~-----~~~~~~~l~~e~GGm~----~~L~~LY~~TG--d~ryL 322 (628)
....+.||++++.+.+.+..+.+.+.-. .+.++ + ..+.|..-....|++. |-|.+.|-.+| |++|+
T Consensus 232 -~~LS~lTGd~kY~~~a~~i~~~l~~~~~-~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~ 309 (522)
T PTZ00470 232 -NYLSEITGDPKYAEYVDKVMDALFSMKP-AINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGREERYR 309 (522)
T ss_pred -HHHHHhhCCHHHHHHHHHHHHHHHhcCC-CCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHH
Confidence 2346789999999999999999975421 11111 1 0111211112234443 67788999995 77787
Q ss_pred HHHhhccc---cccc-----chhh-ccCCCCCCCcccCCcchhhH-HHHHH---H----HhCChHHHHHHHHHHHH-hhh
Q 006861 323 MLAHLFDK---PCFL-----GLLA-LQADDISGFHSNTHIPIVIG-SQMRY---E----VTGDQLHKTISMFFMDI-VNS 384 (628)
Q Consensus 323 ~lA~~f~~---~~~~-----~~~~-~~~d~l~g~hanthip~~~G-~a~~Y---~----~TGD~~y~~a~~~~~~~-v~~ 384 (628)
++-....+ ..++ +... ...+.-.-.|-..|+..+.| ...+. . ...++.|++.++...+. ...
T Consensus 310 ~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~ 389 (522)
T PTZ00470 310 RLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYET 389 (522)
T ss_pred HHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHH
Confidence 65433211 0000 0000 00000011233455555544 22221 1 12345677766655444 333
Q ss_pred cCceeecCCCCCCCCC--CC-cccccC-CCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHHhhhhhc
Q 006861 385 SHTYATGGTSVGEFWS--DP-KRLASN-LDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG 452 (628)
Q Consensus 385 ~~~y~TGG~g~~E~f~--~~-~~L~~~-~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~ila 452 (628)
++...||-.- |.|. .. .++.-. ....|- ---+.+.+.-.|+|+|||++|-|+..+++ .+|-.
T Consensus 390 Y~~~~tGl~P--E~~~~~~~~~~~~~~~~d~~Y~---LRPE~iES~fylyR~TgD~~yre~gW~~f-~ai~k 455 (522)
T PTZ00470 390 YATSPTGLGP--EIFHFDPNSGDISPNVHDSHYI---LRPETVESIFILYRLTGDPKYREWAWKIF-QAIEK 455 (522)
T ss_pred HHhcccCCCC--ceEEeccCccccccccCCCCCC---CChhHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHH
Confidence 4445666432 3331 10 011000 011110 11334566778999999999999987754 55544
No 29
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.76 E-value=0.077 Score=59.48 Aligned_cols=265 Identities=8% Similarity=0.038 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCccccc-chhhhh---HHHH
Q 006861 182 VGHYLSASALMWAST--HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPY-YTIHKI---LAGL 255 (628)
Q Consensus 182 ~G~~LsalA~~ya~t--~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~py-y~~Hki---~aGL 255 (628)
.-++|.++--+|..+ +|+.|.+|+.++.|.|..+-+ .++|. |++.-.+.. .....|.+. -+++-+ ..-.
T Consensus 79 ~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~-t~~g~--P~~~~n~~~--~~~~~~~~~~~~la~~gs~~lEf 153 (452)
T PF01532_consen 79 TIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFD-TPTGI--PYPRVNLRT--GGKNRWPGGESSLAEAGSLQLEF 153 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGS-SSSS-----SEEETTT--CEEETTCCGEEEHHHHCSSHHHH
T ss_pred hhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhcc-CCCcc--ccceeeecc--cCCCCCCCCcccccccccceech
Confidence 567888886677777 999999999999999998875 25664 222111100 001112111 011111 1111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh-----hhhhhcc-c-cccccccccccccchH----HHHHHHHHHcC--CHHHH
Q 006861 256 LDQYTYADNAEALRMTTWMVEYFYNRV-----QNVIKKY-S-IERHWQTLNEEAGGMN----DVLYKLFCITQ--DPKHL 322 (628)
Q Consensus 256 l~~Y~~tG~~kaL~ia~~~ad~~~~~~-----~~~~~~~-~-~~~~~~~l~~e~GGm~----~~L~~LY~~TG--d~ryL 322 (628)
....+.||++++.+.+.+..+.+.+.. ..+.+.. . ..+.|..-....|++. |-|.+.|-.+| |+.|+
T Consensus 154 ~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~ 233 (452)
T PF01532_consen 154 TRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYR 233 (452)
T ss_dssp HHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHH
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHH
Confidence 235678999999999999999997621 1111110 0 0111111112334443 68899999999 88888
Q ss_pred HHHhhccc---cc-ccchhh--------c-cCC---CCCCCcccCCcchhhHH-HHH-HHHhCChHHHHHHHHHHHH-hh
Q 006861 323 MLAHLFDK---PC-FLGLLA--------L-QAD---DISGFHSNTHIPIVIGS-QMR-YEVTGDQLHKTISMFFMDI-VN 383 (628)
Q Consensus 323 ~lA~~f~~---~~-~~~~~~--------~-~~d---~l~g~hanthip~~~G~-a~~-Y~~TGD~~y~~a~~~~~~~-v~ 383 (628)
++=+...+ +. ...+.. . ..+ ...-.+...|+-.+.|. ..+ .+.-+++.+++.|+...+. ..
T Consensus 234 ~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~~~~~~~A~~l~~~C~~ 313 (452)
T PF01532_consen 234 DMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFNDEGDLELAEELTETCYW 313 (452)
T ss_dssp HHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCchhHHHHHHHHHHHHHH
Confidence 76433210 00 011000 0 000 11112334566666552 222 2344778888877665554 33
Q ss_pred hcCceeecCCCCCCCCCCCc-----cc---ccCCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHHHHhhhhhc
Q 006861 384 SSHTYATGGTSVGEFWSDPK-----RL---ASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG 452 (628)
Q Consensus 384 ~~~~y~TGG~g~~E~f~~~~-----~L---~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~ila 452 (628)
-++.++||..-..=.|.... +- ............--.+.+.+..+|+|+|||++|-|+-..++ +++-.
T Consensus 314 ~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if-~ai~k 389 (452)
T PF01532_consen 314 LYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIF-QAIEK 389 (452)
T ss_dssp HHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHH-HHHHH
T ss_pred HHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHH-HHHHH
Confidence 45566667543211111100 00 00000011223334477888889999999999999987765 55544
No 30
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=95.47 E-value=0.6 Score=50.86 Aligned_cols=183 Identities=11% Similarity=-0.075 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCcccccCCchh-hh--hhhh--cCCcccccchhhhhHHHHHHHHHHc-CCHHHHHH
Q 006861 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQ-FD--RLEA--LIPVWAPYYTIHKILAGLLDQYTYA-DNAEALRM 270 (628)
Q Consensus 197 ~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~-~~--r~~~--~~~~w~pyy~~Hki~aGLl~~Y~~t-G~~kaL~i 270 (628)
.+++....+..+++.+.+.+.....+|.-...... .. .+.. ..-.|+.=.++ |+..|...|+.+ ++++.+++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aG--i~~~L~~~~~~~~~~~~~~~~ 197 (382)
T cd04793 120 PDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEFPEGHINLGLAHGIAG--PLALLALAKERGIRVDGQLEA 197 (382)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccCCCccccccchhcchH--HHHHHHHHHHcCCCcCChHHH
Confidence 56777778888888887765422223332211100 00 0000 00011111122 455555677777 88999999
Q ss_pred HHHHHHHHHHHhhhhhh-cccccc------------cc--cccccccc--chHHHHHHHHHHcCCHHHHHHHhhcccccc
Q 006861 271 TTWMVEYFYNRVQNVIK-KYSIER------------HW--QTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCF 333 (628)
Q Consensus 271 a~~~ad~~~~~~~~~~~-~~~~~~------------~~--~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~~~~~ 333 (628)
+.+..+|+.+.+..... .+...+ .. ....-.+| |+..++..+++.++|+++.+.|....+...
T Consensus 198 i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 277 (382)
T cd04793 198 IQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAAL 277 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999988665421100 000000 00 00111234 778899999999999999999887643321
Q ss_pred cchhhccCCCCCCCcccCCcchh--hHHHHHHHHhCChHHHHHHHHHHHHhhh
Q 006861 334 LGLLALQADDISGFHSNTHIPIV--IGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (628)
Q Consensus 334 ~~~~~~~~d~l~g~hanthip~~--~G~a~~Y~~TGD~~y~~a~~~~~~~v~~ 384 (628)
..... .... ..+...|...- ......|+.|+|+.++++++++.+.+..
T Consensus 278 ~~~~~--~~~~-~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~ 327 (382)
T cd04793 278 KDKKQ--LSKL-ISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQIIS 327 (382)
T ss_pred hChhh--hccC-CCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 11000 0000 12334555533 3466779999999999999988887764
No 31
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=95.22 E-value=0.15 Score=50.36 Aligned_cols=132 Identities=19% Similarity=0.127 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcccccccchhhcc-----CC---------CCCCCc-ccCCcchhhHHHHHHHHhCChHH
Q 006861 307 DVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ-----AD---------DISGFH-SNTHIPIVIGSQMRYEVTGDQLH 371 (628)
Q Consensus 307 ~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~~~-----~d---------~l~g~h-anthip~~~G~a~~Y~~TGD~~y 371 (628)
.+|+|+|++|||++||+.|++..+....-....+ .+ ..+..| -|.||-..+|.-+.+..|+++..
T Consensus 37 s~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~~A 116 (189)
T PF06662_consen 37 SVLARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDEEA 116 (189)
T ss_pred HHHHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCHHH
Confidence 6889999999999999999985322110000000 00 000111 14455556788888899999887
Q ss_pred HHHHHHHHHHhhhc-CceeecCCCCCC--CCCCCcccccCCCCCccccchHHHHHHHHHHhhhccCCchhHHHHHH
Q 006861 372 KTISMFFMDIVNSS-HTYATGGTSVGE--FWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYER 444 (628)
Q Consensus 372 ~~a~~~~~~~v~~~-~~y~TGG~g~~E--~f~~~~~L~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~~YaD~~Er 444 (628)
++.-+...+.+... ..|-+|+.+... |+.... .++.-+-.|- .. -+.....|..+|+|+.|.+++||
T Consensus 117 ~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~~-~~~~a~~~YH--~l---Hi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 117 KELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLGN-APNIARWDYH--RL---HIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCchhhcccccccc-CcCcCcchHH--HH---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 77666666655321 256677666432 222111 1111001121 22 23445679999999999999997
No 32
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=95.17 E-value=0.48 Score=51.38 Aligned_cols=195 Identities=15% Similarity=0.078 Sum_probs=107.2
Q ss_pred CCcCCCccchHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhh
Q 006861 173 PSCELRGHFVGHYLSASALMWASTHNES---LKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIH 249 (628)
Q Consensus 173 ~d~~l~Gh~~G~~LsalA~~ya~t~D~~---L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~H 249 (628)
.+.++.+|.+ -|-|+|. ++..++++ +++.+..+++.+..-++.---||.-+.+.. ... ...-.+|
T Consensus 111 at~d~Y~haF--allA~A~-~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~------~pl---~sNp~MH 178 (388)
T COG2942 111 ATKDLYGHAF--ALLAAAH-AATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGS------APL---GSNPHMH 178 (388)
T ss_pred ccHhHHHHHH--HHHHHHH-HHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCC------Ccc---CCCcchH
Confidence 4557766665 4555555 34455555 555555555555444441112333222211 000 1233567
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhc----ccccccccccccccc-----ch--H--HHHHHHHHHc
Q 006861 250 KILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKK----YSIERHWQTLNEEAG-----GM--N--DVLYKLFCIT 316 (628)
Q Consensus 250 ki~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~----~~~~~~~~~l~~e~G-----Gm--~--~~L~~LY~~T 316 (628)
+++ ++++.|+.+|.+..++.|.+.++-++.+|-....+ +-. .-|.+.+.+.| |+ + ..|.++-+..
T Consensus 179 l~E-A~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd-~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~ 256 (388)
T COG2942 179 LLE-AMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFD-HDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRR 256 (388)
T ss_pred HHH-HHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcc-ccCCcCCCcccCCCCCchHHHHHHHHHHHHHHh
Confidence 666 55699999999999999999999999887542211 111 11333333333 22 2 3677888888
Q ss_pred CCHHHHHHHhhcccccc---cchhhc------cCCCCCCCc--ccCCcch--hhHHH-HHHHHhC-ChHHHHHHHHHHHH
Q 006861 317 QDPKHLMLAHLFDKPCF---LGLLAL------QADDISGFH--SNTHIPI--VIGSQ-MRYEVTG-DQLHKTISMFFMDI 381 (628)
Q Consensus 317 Gd~ryL~lA~~f~~~~~---~~~~~~------~~d~l~g~h--anthip~--~~G~a-~~Y~~TG-D~~y~~a~~~~~~~ 381 (628)
++...++.|+++..... .++... ..|. ..| .+-.=|. .++++ ..+..|| +++|.+...++|+.
T Consensus 257 ~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~--~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~ 334 (388)
T COG2942 257 GRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDG--SPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDY 334 (388)
T ss_pred chhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCC--CcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 99999999988643211 011000 0011 001 0111122 24444 4578889 89999988888887
Q ss_pred hh
Q 006861 382 VN 383 (628)
Q Consensus 382 v~ 383 (628)
..
T Consensus 335 ~~ 336 (388)
T COG2942 335 LW 336 (388)
T ss_pred HH
Confidence 65
No 33
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=93.91 E-value=0.52 Score=49.68 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhh-hHHHHHH
Q 006861 183 GHYLSASALMWAST----HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHK-ILAGLLD 257 (628)
Q Consensus 183 G~~LsalA~~ya~t----~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hk-i~aGLl~ 257 (628)
.|=|-++-+++... .++.+.+-+..-||.+.+.|. ++|-.-+--....||+ +.||-+-- +..-|+.
T Consensus 221 AhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rf--psGNyP~s~~~~~drL-------VhWcHGApGv~~~L~k 291 (403)
T KOG2787|consen 221 AHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRF--PSGNYPSSEGNKRDRL-------VHWCHGAPGVAYTLAK 291 (403)
T ss_pred hhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccC--CCCCCCcccCCCccee-------eeeccCCchHHHHHHH
Confidence 44455555555432 356788889999999998888 8885322212222332 11221110 2223457
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhhhhhc-cccccccccccccccchHHHHHHHHHHcCCHHHHHHHhhccc
Q 006861 258 QYTYADNAEALRMTTWMVEYFYNRVQNVIKK-YSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (628)
Q Consensus 258 ~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~-~~~~~~~~~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~ 330 (628)
+|+.-+.+++|+.+.+.+|-+.++ .++.+ .++ -|... |-.-++.-||+.|||.+||.=|+.|..
T Consensus 292 Ay~VF~Eekyl~aa~ecadvVW~r--GlLkkg~Gi-chGva------GNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 292 AYQVFKEEKYLEAAMECADVVWKR--GLLKKGVGI-CHGVA------GNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHh--hhhhcCCcc-ccccc------CchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 899999999999999999999765 22222 211 01111 333688899999999999999999854
No 34
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=93.59 E-value=0.29 Score=52.03 Aligned_cols=141 Identities=16% Similarity=0.036 Sum_probs=76.0
Q ss_pred cccchHHHHHHHHHHcCCHHHHHHHhhcccccccchhhccCCCCCCCcccCCcchhhH--HHHHHHHhCChHHHHHHHHH
Q 006861 301 EAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIG--SQMRYEVTGDQLHKTISMFF 378 (628)
Q Consensus 301 e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~~~~d~l~g~hanthip~~~G--~a~~Y~~TGD~~y~~a~~~~ 378 (628)
|.|-.-..++++|+.|||++||+..+......+... .+.. ..-.| +..| ..-+|+.|||++|++++..+
T Consensus 37 e~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~------g~~~-~~id~--i~~g~~L~~L~e~T~~~~Yl~~a~~~ 107 (357)
T COG4225 37 EQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEG------GLPP-RNIDH--IAAGLTLLPLYEQTGDPRYLEAAIKL 107 (357)
T ss_pred cccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccC------CCCc-cchhh--hccCceeeehhhhhCCHHHHHHHHHH
Confidence 334333578999999999999998876422211111 0100 00111 2233 34569999999999999999
Q ss_pred HHHhhhcCceeecCCCCCCCCCCCcccccCCCCCccccchHHHH-HHHHHHhhhccCCchhHHHHHHHHhhhhhccCCCC
Q 006861 379 MDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNM-LKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGT 457 (628)
Q Consensus 379 ~~~v~~~~~y~TGG~g~~E~f~~~~~L~~~~~~~~~EtCas~~~-l~~~~~L~~~tgd~~YaD~~Er~lyN~ila~~~~~ 457 (628)
-+.+.+.--.--||+ |.... .| +.-=|-+--| .-+.-++=+.+++++|.|.+=+.+-=+.---++|
T Consensus 108 a~~l~~~~Rt~eG~f-----~H~~~-~p------~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp- 174 (357)
T COG4225 108 ASWLVHEPRTKEGGF-----QHKVK-YP------HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDP- 174 (357)
T ss_pred HHHHhhCcccCCCcc-----ccccC-ch------hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCC-
Confidence 888764221112222 11100 00 1111111111 1123446678899999998888775555444543
Q ss_pred CCCcEEE
Q 006861 458 EPGVMIY 464 (628)
Q Consensus 458 d~~~~~Y 464 (628)
+. ..+|
T Consensus 175 ~T-GL~Y 180 (357)
T COG4225 175 ET-GLYY 180 (357)
T ss_pred Cc-CceE
Confidence 32 3455
No 35
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=93.08 E-value=3.2 Score=46.15 Aligned_cols=128 Identities=14% Similarity=0.023 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcccccCCc------hhhhhhhhc-CCcccc-cch-------hhhhHHHHHHHHHHc
Q 006861 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFPT------EQFDRLEAL-IPVWAP-YYT-------IHKILAGLLDQYTYA 262 (628)
Q Consensus 198 D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~------~~~~r~~~~-~~~w~p-yy~-------~Hki~aGLl~~Y~~t 262 (628)
-+.+++.+..=+|.|.++|. ++|.|-.-.. ..|.+.+.. ...-.+ +.. .-.+-++|-.+++.-
T Consensus 93 ~~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~ 170 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF 170 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999 6554322110 011111110 000000 110 111234444455554
Q ss_pred CC------HHHHHHHHHHHHHHHHHhhhhhhcccc--cc-ccc-cccccccchHHHHHHHHHHcCCHHHHHHHhhccc
Q 006861 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYSI--ER-HWQ-TLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 330 (628)
Q Consensus 263 G~------~kaL~ia~~~ad~~~~~~~~~~~~~~~--~~-~~~-~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~ 330 (628)
.+ +++|+.|+++-+|..+.-......... .+ +.. ....| +..+-++||+.|||++|++.++.+..
T Consensus 171 k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De---~~wAA~~Ly~aTg~~~Y~~~a~~~~~ 245 (444)
T PF00759_consen 171 KDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDE---LAWAAAELYRATGDESYLDYAKEYYD 245 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHH---HHHHHHHHHHHHT-HHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccH---HHHHHHHHHHhcCcHHHHHHHHHhHH
Confidence 44 588999999999886543221111000 00 000 00011 23466899999999999999988754
No 36
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=92.19 E-value=2.2 Score=46.49 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhhcCCc-ccccC-Cch-hhhhhh-hcCCcccccchhhh-hHHHHHHH
Q 006861 185 YLSASALMWAST-HNESLKEKMSAVVSALSACQKEIGSG-YLSAF-PTE-QFDRLE-ALIPVWAPYYTIHK-ILAGLLDQ 258 (628)
Q Consensus 185 ~LsalA~~ya~t-~D~~L~~k~d~~Vd~l~~~Q~~~~dG-Yl~~~-~~~-~~~r~~-~~~~~w~pyy~~Hk-i~aGLl~~ 258 (628)
.+.+++.++..+ .++..++.+.+.++.+.+.+.....| |.... +.. ....-. .......-+|.|-. |...++.+
T Consensus 177 i~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~ 256 (382)
T cd04793 177 PLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLA 256 (382)
T ss_pred HHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHH
Confidence 556677777777 89999999999999988887633332 11110 100 000000 00000111332211 55566678
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc--chHHHHHHHHHHcCCHHHHHHHhhcc
Q 006861 259 YTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFD 329 (628)
Q Consensus 259 Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~ 329 (628)
++.++++++++.+.+....+.++..... . ...+. -.+| |+...|.++|+.|+|+++++.|+++.
T Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~--~~~~~----lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~ 322 (382)
T cd04793 257 GKALDDQKLQEAAEKILKAALKDKKQLS-K--LISPT----LCHGLAGLLFIFYLLYKDTNTNEFKSALEYLL 322 (382)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhChhhhc-c--CCCCC----cCccHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 8899999999998888776654321110 0 00000 1233 67789999999999999999988763
No 37
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=91.92 E-value=2.2 Score=46.41 Aligned_cols=141 Identities=12% Similarity=0.029 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHH--HHHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAG--LLDQY 259 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aG--Ll~~Y 259 (628)
.=|-+||+=..|+.+++....++++++++.+...+-..++|=+.-++...++-....++.+ .--||-++-+ |++..
T Consensus 176 ~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~--~ePGH~fEW~~Lll~~a 253 (388)
T COG2942 176 HMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRG--IEPGHQFEWAWLLLDIA 253 (388)
T ss_pred chHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCC--CCCchHHHHHHHHHHHH
Confidence 4588899888899999999999999999999999886677777655442211000011111 2246776544 24667
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhh-hhhc----c--------ccccccccccccccchHHHHHHHHHHcC-CHHHHHHH
Q 006861 260 TYADNAEALRMTTWMVEYFYNRVQN-VIKK----Y--------SIERHWQTLNEEAGGMNDVLYKLFCITQ-DPKHLMLA 325 (628)
Q Consensus 260 ~~tG~~kaL~ia~~~ad~~~~~~~~-~~~~----~--------~~~~~~~~l~~e~GGm~~~L~~LY~~TG-d~ryL~lA 325 (628)
+..|+.++...|+++.+-..+.--. .-++ + ..+..|- .+|. ..+++-|+..|| +++|.+..
T Consensus 254 ~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~Wp--Q~E~---l~AA~ala~~~~~~~~y~~~~ 328 (388)
T COG2942 254 RRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWP--QTEA---LKAAVALAETTGARERYWQWY 328 (388)
T ss_pred HHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhCh--HHHH---HHHHHHHHhcCCchHHHHHHH
Confidence 7789999999999998877553111 0000 0 0011221 1332 257788999999 99999998
Q ss_pred hhcc
Q 006861 326 HLFD 329 (628)
Q Consensus 326 ~~f~ 329 (628)
.++.
T Consensus 329 ~R~~ 332 (388)
T COG2942 329 ARAW 332 (388)
T ss_pred HHHH
Confidence 8763
No 38
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=91.71 E-value=1.1 Score=50.41 Aligned_cols=76 Identities=21% Similarity=0.185 Sum_probs=49.6
Q ss_pred hcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHH-------HHHHHcCCHHH
Q 006861 195 STHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLL-------DQYTYADNAEA 267 (628)
Q Consensus 195 ~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl-------~~Y~~tG~~ka 267 (628)
.|+|+.+++-+.+.++.+-+... +-|-+|...... ...|.-.-++ |=||+- -.|-.-|++++
T Consensus 211 LTGD~~fE~vA~~A~~~lW~~RS--~igLlGn~idV~-------tG~W~~~~sG--IGAgiDSfyEYllK~yILfgd~e~ 279 (622)
T KOG2429|consen 211 LTGDPKFEKVARRALDALWSLRS--GIGLLGNHIDVQ-------TGEWTAPDSG--IGAGIDSFYEYLLKGYILFGDPEL 279 (622)
T ss_pred hhCCcHHHHHHHHHHHHHHhhcC--CCCcccceeecc-------ccceeccccc--cccchHHHHHHHHHHheecCCHHH
Confidence 89999999999999999999888 888887764321 1223222222 333332 34445688888
Q ss_pred HHHHHHHHHHHHHH
Q 006861 268 LRMTTWMVEYFYNR 281 (628)
Q Consensus 268 L~ia~~~ad~~~~~ 281 (628)
|++-.....-+.++
T Consensus 280 lemf~ea~~ai~~y 293 (622)
T KOG2429|consen 280 LEMFNEAYEAIQKY 293 (622)
T ss_pred HHHHHHHHHHHHHH
Confidence 88766665555444
No 39
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=91.50 E-value=0.37 Score=51.29 Aligned_cols=180 Identities=14% Similarity=0.058 Sum_probs=96.7
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhh-h-cCCcccccchhhhhHHHHHHHH-HHcCCHHHH
Q 006861 192 MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLE-A-LIPVWAPYYTIHKILAGLLDQY-TYADNAEAL 268 (628)
Q Consensus 192 ~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~-~-~~~~w~pyy~~Hki~aGLl~~Y-~~tG~~kaL 268 (628)
.+..++++++.+.+..+++.|.+... ... . ... .....|. . ..-..+.=.+| |+..|...| +.+++++.+
T Consensus 118 ~~~~~~~~~~l~~i~~~~~~l~~~~~--~~~-~-~~~-~~~~~~~~~~~~~G~aHG~~G--i~~~L~~~~~~~~~~~~~~ 190 (355)
T PF05147_consen 118 LYEKTKDPKYLDIIEKILEKLLESII--NDD-P-SEN-QIGSEWKEGFINLGFAHGIAG--ILYALLRLYKKGTKDPEYL 190 (355)
T ss_dssp HHHHHCCHHS-HHHHHHHHHCCCHHC--CCH-T-CCG-SSSHHCHTTBEE-STTTSHHH--HHHHHCHCCHHT--HHHHH
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHh--hcc-c-ccC-CCccccCCCCccCCccccHHH--HHHHHHHhhhcccCchhHH
Confidence 33456888888999999988887776 321 0 000 0001110 0 00001111122 455555667 588999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccccc----ccccccc--chHHHHHHHHHHcCCHHHHHHHhhcccccccchhhccCC
Q 006861 269 RMTTWMVEYFYNRVQNVIKKYSIERHWQ----TLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQAD 342 (628)
Q Consensus 269 ~ia~~~ad~~~~~~~~~~~~~~~~~~~~----~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~~~~d 342 (628)
+++.++.++..+........++...... ...-.+| |+..++.++++.++|+.+.+.+..+....... ..
T Consensus 191 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 265 (355)
T PF05147_consen 191 KLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQK-----GL 265 (355)
T ss_dssp HCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH------T
T ss_pred HHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-----cc
Confidence 9999999999776532111111000000 0111234 77889999999999999999888764332110 00
Q ss_pred CCCCCcccCCcchh--hHHHHHHHHhCChHHHHHHHHHHHHhhh
Q 006861 343 DISGFHSNTHIPIV--IGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (628)
Q Consensus 343 ~l~g~hanthip~~--~G~a~~Y~~TGD~~y~~a~~~~~~~v~~ 384 (628)
...-....|...- .-....|+.++++.|++.++.+++.+.+
T Consensus 266 -~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T PF05147_consen 266 -FLNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLS 308 (355)
T ss_dssp -CTTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCT
T ss_pred -cCCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 0011224455532 3367779999999999999999888763
No 40
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=90.79 E-value=1.4 Score=49.32 Aligned_cols=141 Identities=23% Similarity=0.195 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhhcC-------CcccccCCchhhhhhh-hcCCcccccch--hhh
Q 006861 182 VGHYLSASALMWASTH-NESLKEKMSAVVSALSACQKEIG-------SGYLSAFPTEQFDRLE-ALIPVWAPYYT--IHK 250 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~-D~~L~~k~d~~Vd~l~~~Q~~~~-------dGYl~~~~~~~~~r~~-~~~~~w~pyy~--~Hk 250 (628)
-|--+|++|.+++.++ ++++.+.+..+++.+.+.-...+ .=|.++-- +.+ ..+..|+|-+. .-.
T Consensus 507 nGLviSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g-----~ve~~n~~~~~~~FldDYAF 581 (786)
T KOG2244|consen 507 NGLVISGLAKAGKILKAEPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASG-----RVEHSNRPSKAPAFLDDYAF 581 (786)
T ss_pred cchhhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCc-----ceeccCCccccchhhhhHHH
Confidence 4677899999998775 55999999999988876654111 22322221 111 12355664211 123
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhcccc-----ccccccccccc-c----c---hHHHHHHHHHHcC
Q 006861 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSI-----ERHWQTLNEEA-G----G---MNDVLYKLFCITQ 317 (628)
Q Consensus 251 i~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~-----~~~~~~l~~e~-G----G---m~~~L~~LY~~TG 317 (628)
+..||+|.|+.+|+...|+-|.++-|--.+.|-+. .++-. ++--.-+.+.+ | | -.-.|++||.+++
T Consensus 582 lI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdg-ggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~ 660 (786)
T KOG2244|consen 582 LISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDG-GGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVA 660 (786)
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHheecC-CceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhh
Confidence 78899999999999999999999988665544320 11100 00000000001 1 1 1146899999999
Q ss_pred CHHHHHHHhhc
Q 006861 318 DPKHLMLAHLF 328 (628)
Q Consensus 318 d~ryL~lA~~f 328 (628)
.+.||+-|.++
T Consensus 661 ~e~yl~ka~~l 671 (786)
T KOG2244|consen 661 AESYLNKAHRL 671 (786)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 41
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=89.06 E-value=6.1 Score=41.92 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHHHHH-hhhhhhcccc--cc-cccccccccc--chHHHHHHHHHHcCCHHHHHHHhhc----ccccc
Q 006861 264 NAEALRMTTWMVEYFYNR-VQNVIKKYSI--ER-HWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLF----DKPCF 333 (628)
Q Consensus 264 ~~kaL~ia~~~ad~~~~~-~~~~~~~~~~--~~-~~~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f----~~~~~ 333 (628)
.++.++.++.-.||+.+. |.. +.++. .+ ....+|-.+| |+...|++.|++-++++||+.|..- .+..+
T Consensus 240 ~~~~~~dVK~sldym~~~rfps--GNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 240 QPALLKDVKGSLDYMIQNRFPS--GNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred chhHHHhhhhHHHHHHHccCCC--CCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 345688899999999753 321 11211 11 1112233455 8889999999999999999887653 23222
Q ss_pred cchhhccCCCCCCCcccCCcch--hhHHHHHHHHhCChHHHHHHHHHHHHhhh
Q 006861 334 LGLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTISMFFMDIVNS 384 (628)
Q Consensus 334 ~~~~~~~~d~l~g~hanthip~--~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~ 384 (628)
+- ++. | -.|..- ..-+...|++|||.+|+--|..|...+.+
T Consensus 318 Lk---kg~----G---ichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld 360 (403)
T KOG2787|consen 318 LK---KGV----G---ICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLD 360 (403)
T ss_pred hh---cCC----c---ccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHh
Confidence 11 111 1 122222 23377889999999999999999998875
No 42
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=87.80 E-value=1.7 Score=46.26 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=74.7
Q ss_pred HHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcC
Q 006861 185 YLSASALMW-ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYAD 263 (628)
Q Consensus 185 ~LsalA~~y-a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG 263 (628)
.+.+++.++ ..++++++++.+.++++.+.+.+.....+|..........+ +..|--=-.| |..++..+++..+
T Consensus 172 i~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~WC~G~~G--i~~~~~~~~~~~~ 245 (355)
T PF05147_consen 172 ILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKS----RPSWCYGSPG--ILLALLKAYKILD 245 (355)
T ss_dssp HHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC------SSSSSHHH--HHHHHHHHHHHCT
T ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccccc----ccccccCcHH--HHHHHHHHHHhhc
Confidence 444555555 37789999999999999999888643566543322211100 2333111122 4555567888899
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccc--chHHHHHHHHHHcCCHHHHHHHhhcc
Q 006861 264 NAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFD 329 (628)
Q Consensus 264 ~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~G--Gm~~~L~~LY~~TGd~ryL~lA~~f~ 329 (628)
++...+.+..+...+.+.-. ... . ..-.+| |+...|..+|+.|+++.|.+.++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~~~-----~----~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (355)
T PF05147_consen 246 DEEYDEEAEQALESILQKGL-FLN-----N----PSLCHGTAGILEILLDLYKYTGDEEYKELANKLI 303 (355)
T ss_dssp -HHHHHHHHHHHHHHHHH-T-CTT-----S----S-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccc-cCC-----C----CceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988888877754210 000 0 001233 67789999999999999999998873
No 43
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=86.57 E-value=13 Score=44.46 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=88.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCc-ccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCCHHHH
Q 006861 190 ALMWASTHNESLKEKMSAVVSALSACQKEIGSG-YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEAL 268 (628)
Q Consensus 190 A~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dG-Yl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~~kaL 268 (628)
||+..+|+...+++.+.+.+..+.+.-...-.+ -+|++. +.=.-.| ||.-.|..+++..+-
T Consensus 657 ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~-----------G~~g~~y-------al~~I~~~~~~~~l~ 718 (963)
T COG4403 657 AYLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFT-----------GLSGYFY-------ALWKIYSVTRDNYLI 718 (963)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHhhhhccCCccccccc-----------ccchhhh-------hhHHHHHhcccHHHH
Confidence 333347999999999999888777665411111 111221 1111123 444567778888877
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHHcCCHHHHHHHhhcccccccchhhccCCCCC-CC
Q 006861 269 RMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDIS-GF 347 (628)
Q Consensus 269 ~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f~~~~~~~~~~~~~d~l~-g~ 347 (628)
.-+.+.+..+...... --. ...+++-. |.--+|+.+|+.|.+||.|++|.-..+..+.. ..+.|... -.
T Consensus 719 ~~~~~~i~~le~~v~~----~~~---~d~i~Gl~-g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l 788 (963)
T COG4403 719 QSAENSIRHLEILVQK----SKD---PDFINGLA-GVICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVL 788 (963)
T ss_pred HHHHHHHHHHHHHHhh----ccC---cchhhccH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhcccccccee
Confidence 7777766655443221 000 01111111 34468999999999999999997654322211 11112111 11
Q ss_pred cccCCcc--hhhHHHHHHHHhCChHHHHHHH
Q 006861 348 HSNTHIP--IVIGSQMRYEVTGDQLHKTISM 376 (628)
Q Consensus 348 hanthip--~~~G~a~~Y~~TGD~~y~~a~~ 376 (628)
..-.|.. ++...+..|+.|||+.++...+
T Consensus 789 ~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~ 819 (963)
T COG4403 789 LGFSHGASGIILTLLKLYEATGEESLLKKIK 819 (963)
T ss_pred cccccchHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1234444 2334677899999999877654
No 44
>PLN02909 Endoglucanase
Probab=85.63 E-value=15 Score=41.54 Aligned_cols=120 Identities=10% Similarity=0.006 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcccccCCch------hhhhhhhcCCcccccch----------hhhhHHHHHHHHHH
Q 006861 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFPTE------QFDRLEALIPVWAPYYT----------IHKILAGLLDQYTY 261 (628)
Q Consensus 198 D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~------~~~r~~~~~~~w~pyy~----------~Hki~aGLl~~Y~~ 261 (628)
-+.+++.+..-+|.|+++|. ++|-+-.--.. .|.+=++.... -|.|. ....-++|-.+++.
T Consensus 119 ~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~-R~~~~i~~~~pgtd~a~~~AAAlA~as~v 195 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTP-RTVLEIDEKTPGTEIAAETAAAMAASSMV 195 (486)
T ss_pred hHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCC-ceeEecCCCCCCcHHHHHHHHHHHHHHHh
Confidence 47889999999999999998 55543211000 01100110000 01111 11234455455555
Q ss_pred cCC------HHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccc----hHHHHHHHHHHcCCHHHHHHHhh
Q 006861 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHL 327 (628)
Q Consensus 262 tG~------~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG----m~~~L~~LY~~TGd~ryL~lA~~ 327 (628)
-.+ ++.|+.|+++-+|..+.-+ . +... ...-...+| +..+-+|||+.|||++||+.+..
T Consensus 196 fk~~D~~yA~~lL~~Ak~~y~fA~~~~g-~---y~~~---~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 196 FRHVDHKYSRRLLNKAKLLFKFAKAHKG-T---YDGE---CPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCC-C---cCCC---CCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 443 4688888888888865311 1 1100 000011111 33566899999999999997664
No 45
>PLN02345 endoglucanase
Probab=83.91 E-value=11 Score=42.47 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcccccCCch------hhhhhhhcCCcccccch----------hhhhHHHHHHHHHH
Q 006861 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFPTE------QFDRLEALIPVWAPYYT----------IHKILAGLLDQYTY 261 (628)
Q Consensus 198 D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~------~~~r~~~~~~~w~pyy~----------~Hki~aGLl~~Y~~ 261 (628)
-+.+++.+..-.|.|+++|. ++|-+-.--.. .|.+=++.. .--|.|. .-.+-++|.+++..
T Consensus 81 ~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~~~~~~pgsd~a~~~AAAlA~as~v 157 (469)
T PLN02345 81 LDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMD-EKRPLTKINTSSPGSEVAAETAAAMAAASLV 157 (469)
T ss_pred hHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcC-CcceEEecCCCCCCcHHHHHHHHHHHHHHHH
Confidence 36788889999999999998 66543211000 011001100 0011111 11234444455555
Q ss_pred cCC------HHHHHHHHHHHHHHHHHhhhhhhcccc-cc-ccc-cccccccchHHHHHHHHHHcCCHHHHHHHh
Q 006861 262 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSI-ER-HWQ-TLNEEAGGMNDVLYKLFCITQDPKHLMLAH 326 (628)
Q Consensus 262 tG~------~kaL~ia~~~ad~~~~~~~~~~~~~~~-~~-~~~-~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~ 326 (628)
-.+ .++|+.|+++-+|..+.-+......+. .+ +.. ....| +..+-+|||+.|||++||+.+.
T Consensus 158 fk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s~~~~DE---l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 158 FKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNSTGYGDE---LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCCcccccH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 443 478888999888886532111000000 00 000 00111 3356789999999999999874
No 46
>PLN02266 endoglucanase
Probab=83.88 E-value=18 Score=41.35 Aligned_cols=127 Identities=11% Similarity=0.003 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcccccCCch------hhhhhhh---cCCccc-----ccc-hhhhhHHHHHHHHHHc
Q 006861 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFPTE------QFDRLEA---LIPVWA-----PYY-TIHKILAGLLDQYTYA 262 (628)
Q Consensus 198 D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~------~~~r~~~---~~~~w~-----pyy-~~Hki~aGLl~~Y~~t 262 (628)
-+.+++.+..-.|.|+++|. ++|-+-.--.. .|.+=++ .|.... |-- ..-..-|+|-++++.-
T Consensus 129 ~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vf 206 (510)
T PLN02266 129 LQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVF 206 (510)
T ss_pred cHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHh
Confidence 47889999999999999997 55433211000 0110000 111110 000 0111334554555554
Q ss_pred CC------HHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccch----HHHHHHHHHHcCCHHHHHHHhhc
Q 006861 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGM----NDVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 263 G~------~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm----~~~L~~LY~~TGd~ryL~lA~~f 328 (628)
.+ ++.|+.|+++-+|..+.-+.... ++...........+|. ..+-+|||+.|||++|++.++..
T Consensus 207 k~~D~~yA~~~L~~Ak~ly~fa~~~~g~y~~--~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 207 RKSDPTYSKLLVRRAIRVFQFADKYRGAYSN--GLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCCccC--CCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 43 47899999998888643111000 0000000011111222 24668999999999999987654
No 47
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=83.83 E-value=3 Score=46.61 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccc--cchHHHHHHHHHHcCCHHHHHHHhhc
Q 006861 252 LAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEA--GGMNDVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 252 ~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~--GGm~~~L~~LY~~TGd~ryL~lA~~f 328 (628)
+..++-+|+.++++.+.++++.|++.+- ++.. +.....+...-+.... --+..++.+||+.|++++||++|...
T Consensus 390 ll~~vra~~~s~D~~Lw~~~~~m~~~~g--LGdi-g~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~ 465 (557)
T PF06917_consen 390 LLPYVRAYRLSRDPELWDLARTMAHHFG--LGDI-GNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQV 465 (557)
T ss_dssp HHHHHHHHHHS--HHHHHHHHHHHHHTT---EE--TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhcC--cccc-cCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4466789999999999999999998652 2211 1100000000000000 00124789999999999999999875
No 48
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=83.36 E-value=68 Score=36.63 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccC
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAF 227 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~ 227 (628)
-|+-+-|.+..+..|+|+-+..-++.+.+++.+--..-..|+..+.
T Consensus 338 Q~QL~~aysdafklT~de~y~~va~~I~qYl~rdlsh~~GGfysaE 383 (786)
T KOG2244|consen 338 QGQLANAYSDAFKLTKDEMYSYVARDILQYLRRDLSHPEGGFYSAE 383 (786)
T ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHhccCCCCCccccc
Confidence 5778888888899999999999999999999874433244566554
No 49
>PLN00119 endoglucanase
Probab=82.01 E-value=18 Score=41.14 Aligned_cols=126 Identities=10% Similarity=-0.097 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcccccCCc------hhhhhhhh---cCCcc-----ccc-chhhhhHHHHHHHHHHc
Q 006861 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFPT------EQFDRLEA---LIPVW-----APY-YTIHKILAGLLDQYTYA 262 (628)
Q Consensus 198 D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~------~~~~r~~~---~~~~w-----~py-y~~Hki~aGLl~~Y~~t 262 (628)
-+.+++.+..-.|.|+++|. .+|.+-.--. ..|.+=++ .|... .|- -.-...-++|..+++.-
T Consensus 116 ~~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vf 193 (489)
T PLN00119 116 LGNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAF 193 (489)
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHc
Confidence 35688888889999999997 4443311000 01111011 11110 010 01122344444555554
Q ss_pred CC------HHHHHHHHHHHHHHHHHhhhhhhcccc-cc-ccc-cccccccchHHHHHHHHHHcCCHHHHHHHhhc
Q 006861 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYSI-ER-HWQ-TLNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 263 G~------~kaL~ia~~~ad~~~~~~~~~~~~~~~-~~-~~~-~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f 328 (628)
.+ ++.|+.|+++-+|..+.-+..-...+. .+ +.. ....| +..+-+|||+.|||+.|++.++..
T Consensus 194 k~~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~~~g~Y~ss~~~DE---l~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 194 APSDPAYASILIGHAKDLFEFAKAHPGLYQNSIPNAGGFYASSGYEDE---LLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCchhhH---HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 43 468889999888886531110000000 00 000 00111 335668999999999999987644
No 50
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=80.56 E-value=12 Score=42.42 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCccc--------ccchhhhhH
Q 006861 181 FVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWA--------PYYTIHKIL 252 (628)
Q Consensus 181 ~~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~--------pyy~~Hki~ 252 (628)
|+|-+|+|.+ .++|+-++.|+.++.+.|+.+-.. |+|-=.+--. .+.-...+..|+ .+=+.|+..
T Consensus 267 F~GGllsay~----lsge~~f~~kA~~igdkLLpAfnt-ptGIp~~~vn--~ksG~~~n~~wasgg~SILaE~gtlhlef 339 (625)
T KOG2204|consen 267 FVGGLLSAYA----LSGEEMFLEKAPEIGDKLLPAFNT-PTGIPKALVN--NKSGDADNYGWASGGSSILAEFGTLHLEF 339 (625)
T ss_pred eehhhHHHhh----hcccHHHHHhhHHHHHHhhhcccC-CCCCchhhhc--cccCccCCcccccCcchHhhhcCceeeeh
Confidence 4666666544 699999999999999999877652 5553111000 000001123343 244566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh--hhhcc--ccccccccccccccchH----HHHHHHHHHcCCH
Q 006861 253 AGLLDQYTYADNAEALRMTTWMVEYFYNRVQN--VIKKY--SIERHWQTLNEEAGGMN----DVLYKLFCITQDP 319 (628)
Q Consensus 253 aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~--~~~~~--~~~~~~~~l~~e~GGm~----~~L~~LY~~TGd~ 319 (628)
.-| =+.+|++..-+.+.+.-+-+.+...+ +.+.+ +..+.|...+.+.|++- +-|.+++-.|++.
T Consensus 340 ~~L---S~ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~kT 411 (625)
T KOG2204|consen 340 SYL---SKLTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSDKT 411 (625)
T ss_pred HHh---hhccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcCCc
Confidence 544 25689998888777776666554433 11222 22234555566677665 4556777777754
No 51
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=80.55 E-value=2.1 Score=46.75 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhh--hhcc--cc------ccccc--cccccccchHHHHHHHHHHcCC
Q 006861 251 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNV--IKKY--SI------ERHWQ--TLNEEAGGMNDVLYKLFCITQD 318 (628)
Q Consensus 251 i~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~~~--~~~~--~~------~~~~~--~l~~e~GGm~~~L~~LY~~TGd 318 (628)
|+-||+.+|..+|++-+|+.|..++|-+..-|+.. ++.- ++ ..+|. .--.|.-.+.+-+-.|-+.|||
T Consensus 180 vLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~ltgd 259 (546)
T KOG2431|consen 180 VLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLTGD 259 (546)
T ss_pred HHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhcCC
Confidence 78899999999999999999999999998877421 1110 00 11121 0111222233345678889999
Q ss_pred HHHHHHHhhcc
Q 006861 319 PKHLMLAHLFD 329 (628)
Q Consensus 319 ~ryL~lA~~f~ 329 (628)
++|-++|.+..
T Consensus 260 ~kY~~~a~kv~ 270 (546)
T KOG2431|consen 260 PKYEELAEKVT 270 (546)
T ss_pred chHHHHHHHHH
Confidence 99999998864
No 52
>PLN02175 endoglucanase
Probab=80.53 E-value=17 Score=41.27 Aligned_cols=117 Identities=12% Similarity=-0.043 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccch----HHHHHHHHHHcCCHHH
Q 006861 252 LAGLLDQYTYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGM----NDVLYKLFCITQDPKH 321 (628)
Q Consensus 252 ~aGLl~~Y~~tG~------~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm----~~~L~~LY~~TGd~ry 321 (628)
-|+|-++++.-.+ ++.|+.|+++-+|..+.-+.... .........-...+|. ..+-+|||+.|||++|
T Consensus 175 AAALAaaS~vfk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~--~~~~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd~~Y 252 (484)
T PLN02175 175 AAALAAASMVFRKVDSKYSRLLLATAKKVMQFAIQYRGAYSD--SLSSSVCPFYCSYSGYKDELMWGASWLLRATNDPYY 252 (484)
T ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHhCCCCccc--CccccccCccccCCCccHHHHHHHHHHHHHhCCHHH
Confidence 3444455555443 46899999998988653211100 0000000011111222 2466899999999999
Q ss_pred HHHHhhcccccccchhhccCCCCCCCcccCCcchhhHHHHH-HHH------hCChHHHHHHHHHHHHhh
Q 006861 322 LMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMR-YEV------TGDQLHKTISMFFMDIVN 383 (628)
Q Consensus 322 L~lA~~f~~~~~~~~~~~~~d~l~g~hanthip~~~G~a~~-Y~~------TGD~~y~~a~~~~~~~v~ 383 (628)
|+.++.+..... ..... + . .+..|..++ +++ ++.+.|++.+++++....
T Consensus 253 l~~~~~~~~~~~-------~~~~~--W-d---~k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~ 308 (484)
T PLN02175 253 ANFIKSLGGGDQ-------PDIFS--W-D---NKYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKIL 308 (484)
T ss_pred HHHHHHcCCCCC-------CCccC--C-c---CHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcc
Confidence 987765421100 00111 1 1 133454433 332 334578888888888654
No 53
>PLN02613 endoglucanase
Probab=80.43 E-value=20 Score=40.85 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHHHHHHhh-------cCCcccccCCchhhhhhhh---cCCccc-----ccc-hhhhhHHHHHHHHH
Q 006861 197 HNESLKEKMSAVVSALSACQKE-------IGSGYLSAFPTEQFDRLEA---LIPVWA-----PYY-TIHKILAGLLDQYT 260 (628)
Q Consensus 197 ~D~~L~~k~d~~Vd~l~~~Q~~-------~~dGYl~~~~~~~~~r~~~---~~~~w~-----pyy-~~Hki~aGLl~~Y~ 260 (628)
+.+.+++.+..-.|.|.++|.. .+||-.. . ..|.+=++ .|.... |-- ..-..-++|-++++
T Consensus 110 ~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~d--H-~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~ 186 (498)
T PLN02613 110 QLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNAD--H-QCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASL 186 (498)
T ss_pred CchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcc--c-cccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHH
Confidence 4578999999999999999861 0333210 0 00100000 111111 100 01113344445556
Q ss_pred HcCC------HHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccc----hHHHHHHHHHHcCCHHHHHHHhhc
Q 006861 261 YADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 261 ~tG~------~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GG----m~~~L~~LY~~TGd~ryL~lA~~f 328 (628)
.-.+ ++.|+.|+++-+|..+.-+ .+... .......+| +..+-+|||+.|||++|++.++..
T Consensus 187 vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g----~y~~~---~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 187 VFKDVDSSYSSKLLNHARSLFEFADKYRG----SYQAS---CPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHhCCC----CcCCC---CCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 5443 4678889998888865311 11100 000011111 235668999999999999987654
No 54
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=78.47 E-value=18 Score=41.14 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.5
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHhhcCCccc
Q 006861 194 ASTHNESLKEKMSAVVSALSACQKEIGSGYL 224 (628)
Q Consensus 194 a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl 224 (628)
..++|+.+.+|+..+.+.|.+.-. |+|-.
T Consensus 344 ~ltg~P~~~ekv~~IRk~l~k~ek--P~GLy 372 (625)
T KOG2204|consen 344 KLTGNPTFAEKVVKIRKVLNKSEK--PHGLY 372 (625)
T ss_pred hccCCchHHHHHHHHHHHHHhhcC--CCCCC
Confidence 378999999999999999999888 88743
No 55
>PLN02340 endoglucanase
Probab=78.37 E-value=31 Score=40.32 Aligned_cols=126 Identities=10% Similarity=-0.098 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcccccCC------chhhhhhhh---cCCccc-----ccc-hhhhhHHHHHHHHHHc
Q 006861 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFP------TEQFDRLEA---LIPVWA-----PYY-TIHKILAGLLDQYTYA 262 (628)
Q Consensus 198 D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~------~~~~~r~~~---~~~~w~-----pyy-~~Hki~aGLl~~Y~~t 262 (628)
-+.+++.+..-.|.|.+||. +++-|-.-- -..|.+=++ .|.... |-- .-..+-|+|.++++.-
T Consensus 115 ~~~~ldeirw~~Dyllk~~~--~~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vf 192 (614)
T PLN02340 115 MQRTLWAIRWGTDYFIKAHT--QPNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAF 192 (614)
T ss_pred hHHHHHHHHHHHHHHHHhcC--CCCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhc
Confidence 47888889999999999987 443321100 001111111 111110 100 0011334554555544
Q ss_pred CC------HHHHHHHHHHHHHHHHHhhhhhhccc-ccc-ccc-cccccccchHHHHHHHHHHcCCHHHHHHHhhc
Q 006861 263 DN------AEALRMTTWMVEYFYNRVQNVIKKYS-IER-HWQ-TLNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 263 G~------~kaL~ia~~~ad~~~~~~~~~~~~~~-~~~-~~~-~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f 328 (628)
.+ ++.|+.|+++-+|..+.-+..-...+ ..+ +.. ....| +..+-+|||+.|||++||+.+...
T Consensus 193 k~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~s~~~a~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 193 KPYNSSYSDLLLVHAKQLFSFADKFRGLYDDSIQNAKKFYTSSGYSDE---LLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCccccCCCCCCcchH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 32 46888999998988653221100000 000 000 00112 235668999999999999988754
No 56
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=77.08 E-value=9.6 Score=42.73 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHH
Q 006861 182 VGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~ 261 (628)
.++||-+++..|..++|++|.+-+..|...+ +=|=|+...... -+.+.....-.|| ++.++++.|++
T Consensus 386 ~~~yll~~vra~~~s~D~~Lw~~~~~m~~~~-------gLGdig~~~~~~-~~~~~~~~~~sp~-----~L~allEL~~a 452 (557)
T PF06917_consen 386 DPDYLLPYVRAYRLSRDPELWDLARTMAHHF-------GLGDIGNAAGKE-PRVNMQTDNASPY-----LLFALLELYQA 452 (557)
T ss_dssp -HHHHHHHHHHHHHS--HHHHHHHHHHHHHT-------T-EE-TTBTTBS--EE-TT-----HH-----HHHHHHHHHHH
T ss_pred chhHhHHHHHHHHcCCCHHHHHHHHHHHhhc-------CcccccCccccc-cccccCCCCCCHH-----HHHHHHHHHHH
Confidence 5789999999999999999988777766532 456666543321 0011111222333 45577799999
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 006861 262 ADNAEALRMTTWMVEYFYNR 281 (628)
Q Consensus 262 tG~~kaL~ia~~~ad~~~~~ 281 (628)
|+++++|+.|.++++-+.+.
T Consensus 453 tq~~~~l~lA~~~g~~l~~~ 472 (557)
T PF06917_consen 453 TQDARYLELADQVGENLFEQ 472 (557)
T ss_dssp H--HHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 57
>PLN02420 endoglucanase
Probab=74.91 E-value=42 Score=38.48 Aligned_cols=169 Identities=10% Similarity=0.013 Sum_probs=81.4
Q ss_pred HHHhcCCCCCC-----CCCCCCCCCCcCCCccch-HHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHHHHHhhc
Q 006861 154 FRKTARLPAPG-----EPYGGWEEPSCELRGHFV-GHYLSASALMWAS--------THNESLKEKMSAVVSALSACQKEI 219 (628)
Q Consensus 154 Fr~~agl~~~g-----~~~ggWe~~d~~l~Gh~~-G~~LsalA~~ya~--------t~D~~L~~k~d~~Vd~l~~~Q~~~ 219 (628)
+|..++++ +| .--|||.+.+--++-.++ +.-+.-|++.|.. .+-+.+++.+..-+|.|++||.
T Consensus 69 Wr~~s~~~-Dg~~~~~DlsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~ef~d~~~~~g~~~d~Ldeikw~lD~llk~~~-- 145 (525)
T PLN02420 69 WRDHSGLT-DGLEQGVDLVGGYHDAGDHVKFGLPMAFTVTMLSWSVIEYGDQLASTGELSHALEAIKWGTDYFIKAHT-- 145 (525)
T ss_pred ccccCcCc-CCCcCcccCCCcceecCccceecchHHHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHhCc--
Confidence 56666665 22 134688654333332222 3333344444422 2347899999999999999997
Q ss_pred CCcccccCCc------hhhhhhhh---cCCccc-----ccch-hhhhHHHHHHHHHHcCC------HHHHHHHHHHHHHH
Q 006861 220 GSGYLSAFPT------EQFDRLEA---LIPVWA-----PYYT-IHKILAGLLDQYTYADN------AEALRMTTWMVEYF 278 (628)
Q Consensus 220 ~dGYl~~~~~------~~~~r~~~---~~~~w~-----pyy~-~Hki~aGLl~~Y~~tG~------~kaL~ia~~~ad~~ 278 (628)
.++-+-.--. ..|.+=++ .|.... |--. ....-++|-.+++.-.+ ++.|+.|+++-+|.
T Consensus 146 ~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk~~D~~YA~~~L~~Ak~ly~fA 225 (525)
T PLN02420 146 SPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDIAGETAAAMAAASIVFRSTNPHYSHLLLHHAQQLFEFG 225 (525)
T ss_pred CCCceEEeeCCCCcccccccChhhccccCceEEecCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 4332210000 00100000 111100 1000 11123334445554443 36788898888887
Q ss_pred HHHhhhhhhcccc-ccc---cccccccccchHHHHHHHHHHcCCHHHHHHHhhc
Q 006861 279 YNRVQNVIKKYSI-ERH---WQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 279 ~~~~~~~~~~~~~-~~~---~~~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f 328 (628)
.+.-+..-...+. .+. +.....| +..+-+|||+.|||+.|++.+...
T Consensus 226 ~~~~g~y~~~~~~~~g~Y~s~s~y~DE---l~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 226 DKYRGKYDESLKVVKSYYASVSGYMDE---LLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred HhcCCccCCCCcccCCCCCCcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6421110000000 000 0001122 335678999999999999988654
No 58
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=74.57 E-value=3.1 Score=36.39 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=18.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCccccc
Q 006861 188 ASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSA 226 (628)
Q Consensus 188 alA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~ 226 (628)
+++.++...+++...+.+++-++.|.++|. +||-++.
T Consensus 31 ~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~ 67 (109)
T PF13243_consen 31 ALILALAAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGY 67 (109)
T ss_dssp ----------TS-SSBSSHHHHHHHHH-----TTS--S-
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHhcC--CCCCCCC
Confidence 344555566788999999999999999999 9996553
No 59
>PLN02308 endoglucanase
Probab=72.73 E-value=62 Score=36.88 Aligned_cols=124 Identities=10% Similarity=-0.054 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcccccCCch------hhhhhhh---cCCccc-----cc-chhhhhHHHHHHHHHHcC
Q 006861 199 ESLKEKMSAVVSALSACQKEIGSGYLSAFPTE------QFDRLEA---LIPVWA-----PY-YTIHKILAGLLDQYTYAD 263 (628)
Q Consensus 199 ~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~------~~~r~~~---~~~~w~-----py-y~~Hki~aGLl~~Y~~tG 263 (628)
+.+++.+..-.|.|.++|. ++|.+-.--.. .|.+=++ .|.... |- -.....-|+|-++++.-.
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~ 189 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFR 189 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhcc
Confidence 4567777788999999998 66654211000 0110011 111110 10 011123445555666554
Q ss_pred C------HHHHHHHHHHHHHHHHHhhhhhhccccc--c-cc--ccccccccchHHHHHHHHHHcCCHHHHHHHhh
Q 006861 264 N------AEALRMTTWMVEYFYNRVQNVIKKYSIE--R-HW--QTLNEEAGGMNDVLYKLFCITQDPKHLMLAHL 327 (628)
Q Consensus 264 ~------~kaL~ia~~~ad~~~~~~~~~~~~~~~~--~-~~--~~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~ 327 (628)
+ ++.|+.|+++-+|..+.-+......... . +. .....| +..+-+|||+.|||++||+.+..
T Consensus 190 ~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DE---l~WAAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 190 KRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDE---LLWGAAWLHKASRRREYREYIVK 261 (492)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 2 4688888888888865321110000000 0 00 000112 23566899999999999997755
No 60
>PLN03009 cellulase
Probab=70.17 E-value=53 Score=37.48 Aligned_cols=172 Identities=12% Similarity=-0.001 Sum_probs=81.5
Q ss_pred HHHHhcCCCCCC-----CCCCCCCCCCcCCCccch-HHHHHHHHHHHHh-------cCChHHHHHHHHHHHHHHHHHhhc
Q 006861 153 NFRKTARLPAPG-----EPYGGWEEPSCELRGHFV-GHYLSASALMWAS-------THNESLKEKMSAVVSALSACQKEI 219 (628)
Q Consensus 153 nFr~~agl~~~g-----~~~ggWe~~d~~l~Gh~~-G~~LsalA~~ya~-------t~D~~L~~k~d~~Vd~l~~~Q~~~ 219 (628)
.+|..+++. +| .--|||.+.+--++-.++ +.-+.-+++.+.. .+-+.+++.+..-+|.|.++|.
T Consensus 55 ~Wr~ds~~~-Dg~~~~~DlsGGwyDAGD~~Ky~~p~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llkm~~-- 131 (495)
T PLN03009 55 TWRANSGLS-DGWTHNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLKTVS-- 131 (495)
T ss_pred CCcccCcCC-CCCcccccCCCcceeCCCCceeccchHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHHccc--
Confidence 456666664 22 134688654322222222 2223333333322 2346788888889999999987
Q ss_pred CCcccccCCc-h-----hhhhhhh---cCCccc-----ccc-hhhhhHHHHHHHHHHcCC------HHHHHHHHHHHHHH
Q 006861 220 GSGYLSAFPT-E-----QFDRLEA---LIPVWA-----PYY-TIHKILAGLLDQYTYADN------AEALRMTTWMVEYF 278 (628)
Q Consensus 220 ~dGYl~~~~~-~-----~~~r~~~---~~~~w~-----pyy-~~Hki~aGLl~~Y~~tG~------~kaL~ia~~~ad~~ 278 (628)
++|-+-.--. . .|.+=++ .|.... |-- .....-++|-.+++.-.+ ++.|+.|+++-+|.
T Consensus 132 ~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~vfk~~D~~YA~~ll~~Ak~ly~~a 211 (495)
T PLN03009 132 QPNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAIKTFQFA 211 (495)
T ss_pred CcCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHH
Confidence 4543211000 0 0000000 111110 000 012344455455665543 46788888888888
Q ss_pred HHHhhhhhhccc-ccccccccccccc---chHHHHHHHHHHcCCHHHHHHHhh
Q 006861 279 YNRVQNVIKKYS-IERHWQTLNEEAG---GMNDVLYKLFCITQDPKHLMLAHL 327 (628)
Q Consensus 279 ~~~~~~~~~~~~-~~~~~~~l~~e~G---Gm~~~L~~LY~~TGd~ryL~lA~~ 327 (628)
.+.-+....... ..+.......+.| -+..+-+|||+.|||++||+-++.
T Consensus 212 ~~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 212 DMYRGAYSDNDDIKDGVCPFYCDFDGYQDELLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred HHcCCCccCCccccCccccCcCCcccccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 653211100000 0000000001111 123566899999999999998764
No 61
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=68.14 E-value=6.3 Score=41.56 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhhhccCCchhHHHHHHHHhhhhhccCCCCCCCcEEEEccCCC
Q 006861 417 CTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP 470 (628)
Q Consensus 417 Cas~~~l~~~~~L~~~tgd~~YaD~~Er~lyN~ila~~~~~d~~~~~Y~~pl~~ 470 (628)
=+|+.-|++.-++++.++|.+|-|.++|++ |-||++|++ +|| +-.+-|++.
T Consensus 44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgl-d~LL~aQyp-nGG-WPQf~p~~~ 94 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQEKNAKYRDAARKGI-EYLLKAQYP-NGG-WPQFYPLKG 94 (290)
T ss_pred ccHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHhhhCC-CCC-cCcccCCcC
Confidence 356677778888999999999999999999 899999996 655 333337654
No 62
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=68.08 E-value=26 Score=37.48 Aligned_cols=144 Identities=16% Similarity=0.318 Sum_probs=76.0
Q ss_pred CCCCCCCCCcCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCccccc
Q 006861 166 PYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPY 245 (628)
Q Consensus 166 ~~ggWe~~d~~l~Gh~~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~py 245 (628)
+-|.|..-++-+ |--.--|-+-+-.+|...+|+.+.++.+.--+.|.+.-.+ +.=++.- +.+-|-
T Consensus 235 hsgdw~rkdsgi-gagidsyyey~lkayillgddsfldrfn~hydai~ryi~k-~pi~ldv-------------hihkp~ 299 (587)
T KOG2430|consen 235 HSGDWTRKDSGI-GAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKRYINK-GPIFLDV-------------HIHKPM 299 (587)
T ss_pred ccCcceecccCc-CcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHhcC-CCeEEEE-------------ecccch
Confidence 445687776653 3334456666667777899999999888888877654431 1111111 122222
Q ss_pred chhhhhHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHhhh--hhhc---cccccccc--cccccccchHHHHHHHHH
Q 006861 246 YTIHKILAGLLDQY----TYADNAEALRMTTWMVEYFYNRVQN--VIKK---YSIERHWQ--TLNEEAGGMNDVLYKLFC 314 (628)
Q Consensus 246 y~~Hki~aGLl~~Y----~~tG~~kaL~ia~~~ad~~~~~~~~--~~~~---~~~~~~~~--~l~~e~GGm~~~L~~LY~ 314 (628)
-+.--.|-+|++.+ ...|+-+ -|..+..-+.+..+. .++. ...+-||. ++.+|+ .++-+-||+
T Consensus 300 l~ar~~mdallaf~pglqvlkgdik---~aie~heml~qvikkh~flpeaft~df~vhwaehpirpef---aestyflyk 373 (587)
T KOG2430|consen 300 LAARGFMDALLAFFPGLQVLKGDIK---EAIEMHEMLFQVIKKHKFLPEAFTHDFQVHWAEHPIRPEF---AESTYFLYK 373 (587)
T ss_pred hhHhhHHHHHHHhCcchhhhccccH---HHHHHHHHHHHHHHHcccChHhhcccceeecccCCCChhh---hhhheeeec
Confidence 21111233333221 1123322 233333333332211 1111 12234553 455664 578899999
Q ss_pred HcCCHHHHHHHhhccc
Q 006861 315 ITQDPKHLMLAHLFDK 330 (628)
Q Consensus 315 ~TGd~ryL~lA~~f~~ 330 (628)
.|||+-||+.|+.+.+
T Consensus 374 at~dp~yl~v~k~iid 389 (587)
T KOG2430|consen 374 ATGDPHYLEVAKQIID 389 (587)
T ss_pred ccCCchHHHHHHHHHH
Confidence 9999999999998743
No 63
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=64.22 E-value=20 Score=37.85 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=59.0
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCCCCCCCCCcccccCCCCCccccchHHHHHHHHHHhhhccCCc--
Q 006861 359 SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEI-- 436 (628)
Q Consensus 359 ~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~E~f~~~~~L~~~~~~~~~EtCas~~~l~~~~~L~~~tgd~-- 436 (628)
.++.|..|+|++|++++.+..+.+. .--|+.||.-. .|-......+.+ +---=+.++.|.+.+....-.++-
T Consensus 48 La~~y~~t~d~~y~~A~~kgl~ylL-~aQypnGGWPQ--~yP~~~~Y~~~I---TfNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 48 LARVYQATKDPRYREAFLKGLDYLL-KAQYPNGGWPQ--FYPLRGGYHDHI---TFNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHCG-HHHHHHHHHHHHHHH-HHS-TTS--BS--ECS--SGGGGSE---E-GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHH-HhhCCCCCCCc--cCCCCCCCCCce---EEccHHHHHHHHHHHHHHhhcCCccc
Confidence 6788999999999999999999988 46688888764 211111111110 111236688888888888888887
Q ss_pred -------hhHHHHHHHHhhhhhccCC
Q 006861 437 -------AYADYYERSLTNGVLGIQR 455 (628)
Q Consensus 437 -------~YaD~~Er~lyN~ila~~~ 455 (628)
++.+.++|.+ ..||..|-
T Consensus 122 v~~~~~~r~~~A~~kgi-~ciL~tQi 146 (289)
T PF09492_consen 122 VDESLRARARAAVDKGI-DCILKTQI 146 (289)
T ss_dssp S-HHHHHHHHHHHHHHH-HHHHHHS-
T ss_pred cCHHHHHHHHHHHHHHH-HHHHHHHc
Confidence 8888899888 67777664
No 64
>PLN02171 endoglucanase
Probab=62.13 E-value=1.1e+02 Score=36.16 Aligned_cols=125 Identities=9% Similarity=-0.034 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCcccccCCc------hhhhhhhh---cCCcc-----cccc-hhhhhHHHHHHHHHHcC
Q 006861 199 ESLKEKMSAVVSALSACQKEIGSGYLSAFPT------EQFDRLEA---LIPVW-----APYY-TIHKILAGLLDQYTYAD 263 (628)
Q Consensus 199 ~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~------~~~~r~~~---~~~~w-----~pyy-~~Hki~aGLl~~Y~~tG 263 (628)
+.+++.+..-.|.|+++|. ++|-+-.--. ..|.+=++ .|... .|-- .--..-|+|.++++.-.
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk 193 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFR 193 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhcc
Confidence 5677888888999999997 4432211000 00111011 11111 0100 01123344445555544
Q ss_pred C------HHHHHHHHHHHHHHHHHhhhhhhccc-cccccc---cccccccchHHHHHHHHHHcCCHHHHHHHhhc
Q 006861 264 N------AEALRMTTWMVEYFYNRVQNVIKKYS-IERHWQ---TLNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 328 (628)
Q Consensus 264 ~------~kaL~ia~~~ad~~~~~~~~~~~~~~-~~~~~~---~l~~e~GGm~~~L~~LY~~TGd~ryL~lA~~f 328 (628)
+ ++.|+.|+++-+|..+.-+..-...+ ..+.-. -...| +..+-+|||+.|||++||+.+...
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 194 RSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDE---LLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 46888888888888653111000000 000000 00112 235668999999999999987654
No 65
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=60.03 E-value=54 Score=37.13 Aligned_cols=130 Identities=15% Similarity=0.158 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCccccc-CCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCC
Q 006861 186 LSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSA-FPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN 264 (628)
Q Consensus 186 LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~-~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~ 264 (628)
+++.+.+| ..+|.+ -+.+.++.+...|. ++|.+.. +|... . ...-.|-|.++.|. .+-++|+.+||
T Consensus 156 ~~~~~~~~-~~~~~~---l~~~~l~~~~~~q~--~~G~~p~~~P~~~--~----~~~~~~~w~l~~i~-~~~~~y~~tGD 222 (509)
T PF05592_consen 156 VSALTAYY-SFGDAA---LYRKWLRDFADSQR--PDGLLPSVAPSYG--G----GGFGIPDWSLAWII-IPWDYYLYTGD 222 (509)
T ss_dssp HHHHHHHC-CT--HH---HHHHHHHHHHGGTT--TSTT-SSBSS-----S----SGGGBHHHHHHHHH-HHHHHHHHHT-
T ss_pred HHHHHHHH-hCCcHH---HHHHHHHHHHHhhc--ccCCceEEecccC--C----CCCCCccHHHHHHH-HHHHHHHHhCC
Confidence 34444433 455654 46777888888999 8998765 33311 0 01112344444455 44599999999
Q ss_pred HHHH----HHHHHHHHHHHHHhhh---hhhccccccccc----ccccccc----------chHHHHHHHHHHcCCH----
Q 006861 265 AEAL----RMTTWMVEYFYNRVQN---VIKKYSIERHWQ----TLNEEAG----------GMNDVLYKLFCITQDP---- 319 (628)
Q Consensus 265 ~kaL----~ia~~~ad~~~~~~~~---~~~~~~~~~~~~----~l~~e~G----------Gm~~~L~~LY~~TGd~---- 319 (628)
.+.+ +.+++..||+.+...+ .+..+.... |. ......+ .....+++|.+..|++
T Consensus 223 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~D-W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~ 301 (509)
T PF05592_consen 223 REFLEEYYPAMKRYLDYLERRVDDGLDGLPGWGFGD-WLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAA 301 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccCCCCCceee-cCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8655 4567777777654443 111111111 11 0000000 1123567888899984
Q ss_pred HHHHHHhhcc
Q 006861 320 KHLMLAHLFD 329 (628)
Q Consensus 320 ryL~lA~~f~ 329 (628)
+|.++|+.+.
T Consensus 302 ~y~~~a~~lk 311 (509)
T PF05592_consen 302 EYRARAERLK 311 (509)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888887763
No 66
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=58.97 E-value=70 Score=33.88 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccc---hhhhhHHHHHHHHHH
Q 006861 185 YLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYY---TIHKILAGLLDQYTY 261 (628)
Q Consensus 185 ~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy---~~Hki~aGLl~~Y~~ 261 (628)
=|.=|+.+|..++|+.+++.+.+-|+.|++.|- ++|=...+.... ..+ ..+-++. +.| ++..|.+.++.
T Consensus 49 e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p~~-~~Y----~~~ITfND~am~~-vl~lL~~i~~~ 120 (290)
T TIGR02474 49 EIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYPLK-GGY----SDAITYNDNAMVN-VLTLLDDIANG 120 (290)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccCCc-CCc----ccccccCcHHHHH-HHHHHHHHHhc
Confidence 344588889899999999999999999999999 776433332110 000 0001111 112 23334344443
Q ss_pred cC---------CHHHHHHHHHHHHHHHHH
Q 006861 262 AD---------NAEALRMTTWMVEYFYNR 281 (628)
Q Consensus 262 tG---------~~kaL~ia~~~ad~~~~~ 281 (628)
-+ .+++...+.|..|||.+.
T Consensus 121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 121 KDPFDVFPDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 22 257888888888888654
No 67
>PRK13807 maltose phosphorylase; Provisional
Probab=57.24 E-value=48 Score=39.83 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=79.7
Q ss_pred CeEecCCCchHHHHHHHHhhhhcc-cc-chhhHHHHHhcCCCCCCCCCCCCCCCCcCCCccchHHHHHHHHHHHHhcCCh
Q 006861 122 DVRLGSDSMHWRAQQTNLEYLLML-DV-DKLVWNFRKTARLPAPGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNE 199 (628)
Q Consensus 122 ~V~l~~~~~~~~~~~~~~~~ll~l-d~-drll~nFr~~agl~~~g~~~ggWe~~d~~l~Gh~~G~~LsalA~~ya~t~D~ 199 (628)
+|++..+....++.+-++=.|+.. .. +.-+ +. -..|| .|+.|.|-.|+|.++ ||- =..+..+.=+
T Consensus 307 di~I~gd~~~q~alr~~~fhL~~s~~~~~~~~-~i-~a~GL--sge~Y~Gh~FWDtE~-------f~l--P~~~~~~~Pe 373 (756)
T PRK13807 307 DVVIEGDDAAQQGIRFNIFQLFSTYYGEDARL-NI-GPKGF--TGEKYGGATYWDTEA-------YCV--PFYLATADPE 373 (756)
T ss_pred CeEEcCCHHHHHHHHHHHHHHHhccCCCCCCC-Cc-CCCCC--CcCCcCCeeeeccch-------hhh--hhhhhccCHH
Confidence 788854433333444444445432 11 1101 10 13345 356788999999873 221 1111123333
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCCcccccCCchhhhhhhhcCCcccccch-hhh---hHHHHHHHHHHcCCHHHH-----H
Q 006861 200 SLKEKMSAVVSALSACQK-EIGSGYLSAFPTEQFDRLEALIPVWAPYYT-IHK---ILAGLLDQYTYADNAEAL-----R 269 (628)
Q Consensus 200 ~L~~k~d~~Vd~l~~~Q~-~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~-~Hk---i~aGLl~~Y~~tG~~kaL-----~ 269 (628)
.-++.+.+-...|.++.+ +...||-|+.+...-..-....+.|.+-.. .|. |--++..||++|||...| +
T Consensus 374 ~Ar~lL~YR~~~L~~Ar~~A~~~g~~GA~yPW~s~~G~E~~~~w~~~~~e~HI~adIaya~~~Y~~~TgD~~fl~~~G~e 453 (756)
T PRK13807 374 VTRNLLKYRYNQLPGAKENAKKQGLKGALYPMVTFNGIECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDESYLKEEGLE 453 (756)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcCCCccccceEcCCCCcCCCCcCCCceeEechHHHHHHHHHHHHHhCCHHHHHhcCHH
Confidence 445555777777777765 235789888654110011112244543222 232 444666899999998765 7
Q ss_pred HHHHHHHHHHHHh
Q 006861 270 MTTWMVEYFYNRV 282 (628)
Q Consensus 270 ia~~~ad~~~~~~ 282 (628)
++...|.|..++.
T Consensus 454 ~l~etArfw~s~~ 466 (756)
T PRK13807 454 VLVEIARFWADRV 466 (756)
T ss_pred HHHHHHHHHHHhe
Confidence 8888999988775
No 68
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=53.44 E-value=60 Score=38.74 Aligned_cols=111 Identities=17% Similarity=0.247 Sum_probs=66.6
Q ss_pred CCCCCCCCCCCCcCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-hcCCcccccCCchh-hhhhhhcCC
Q 006861 163 PGEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQK-EIGSGYLSAFPTEQ-FDRLEALIP 240 (628)
Q Consensus 163 ~g~~~ggWe~~d~~l~Gh~~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~-~~~dGYl~~~~~~~-~~r~~~~~~ 240 (628)
.|+.|+|-.|+|.++ |+ += .++.+.-+.-+..+.+-...|-.+|+ |...||.|+-+... +..-....+
T Consensus 344 tGegY~GhvfWDTEi-------f~--lP-~l~~t~P~vArnLL~YR~~~L~~Ak~nA~~~G~~GAlyPW~S~~~G~E~t~ 413 (772)
T COG1554 344 TGEGYGGHVFWDTEI-------FV--LP-FLLFTDPEVARNLLLYRYNTLPGAKENAKKYGLKGALYPWESATDGDECTP 413 (772)
T ss_pred CccccCCeeeecchH-------Hh--hh-hhhccChHHHHHHHHHHHhcCHHHHHHHHHcCCCcccceeeecCCCCccCC
Confidence 467899999999873 11 22 23345445566677777788888887 34789999864310 110111123
Q ss_pred cccccc------------hhhh---hHHHHHHHHHHcCCHHHH-----HHHHHHHHHHHHHhh
Q 006861 241 VWAPYY------------TIHK---ILAGLLDQYTYADNAEAL-----RMTTWMVEYFYNRVQ 283 (628)
Q Consensus 241 ~w~pyy------------~~Hk---i~aGLl~~Y~~tG~~kaL-----~ia~~~ad~~~~~~~ 283 (628)
-|++-. -.|. |--++-.|+++|||+++| +|+...|.|..++..
T Consensus 414 ~w~~~~~~~~~~~~~~~~E~Hin~dIAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv~ 476 (772)
T COG1554 414 EWEATFERTGWRVASSDREIHINADIAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRVH 476 (772)
T ss_pred cccccccccccccCccccceehhhHHHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHhe
Confidence 333221 2232 233455788899999865 578888888877753
No 69
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=53.24 E-value=1.5e+02 Score=32.00 Aligned_cols=179 Identities=20% Similarity=0.176 Sum_probs=90.3
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCccc-----------ccchhhhhHHHHHHHHHH
Q 006861 193 WASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWA-----------PYYTIHKILAGLLDQYTY 261 (628)
Q Consensus 193 ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~-----------pyy~~Hki~aGLl~~Y~~ 261 (628)
-..|+++.+++++.+.+|.|-+-.++ ..--.|+.-.- ..++|. .|| .-++.+|-.
T Consensus 198 s~~tg~~ifee~arkaldflwekr~r-ss~l~g~~ini-------hsgdw~rkdsgigagidsyy------ey~lkayil 263 (587)
T KOG2430|consen 198 SRFTGAPIFEEKARKALDFLWEKRHR-SSDLMGTTINI-------HSGDWTRKDSGIGAGIDSYY------EYLLKAYIL 263 (587)
T ss_pred hhccCChhhHHHHHHHHHHHHHHhcc-cccccceeEEe-------ccCcceecccCcCcchHHHH------HHHHHHhhe
Confidence 34799999999999999998765553 22222322110 113333 244 233466777
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHH----HHHHcCCHH-HHHHHhhc----cccc
Q 006861 262 ADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYK----LFCITQDPK-HLMLAHLF----DKPC 332 (628)
Q Consensus 262 tG~~kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~~~L~~----LY~~TGd~r-yL~lA~~f----~~~~ 332 (628)
-|++.+|+..-+..|-+.++....+--....-|.-+++ .+|=| ++|.- |--.-||-+ -+++-+.+ .+..
T Consensus 264 lgddsfldrfn~hydai~ryi~k~pi~ldvhihkp~l~-ar~~m-dallaf~pglqvlkgdik~aie~heml~qvikkh~ 341 (587)
T KOG2430|consen 264 LGDDSFLDRFNKHYDAIKRYINKGPIFLDVHIHKPMLA-ARGFM-DALLAFFPGLQVLKGDIKEAIEMHEMLFQVIKKHK 341 (587)
T ss_pred eccHHHHHHHHHHHHHHHHHhcCCCeEEEEecccchhh-HhhHH-HHHHHhCcchhhhccccHHHHHHHHHHHHHHHHcc
Confidence 89999999888888888665532100000111111111 12212 22211 111234421 22222111 1112
Q ss_pred ccchhhccCCCCCCCcccCCcchh----hHHHHHHHHhCChHHHHHHHHHHHHhhhcCceeec
Q 006861 333 FLGLLALQADDISGFHSNTHIPIV----IGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATG 391 (628)
Q Consensus 333 ~~~~~~~~~d~l~g~hanthip~~----~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TG 391 (628)
| -|.+...|- ..|.-. -|+. +..--.|+.|||+-|++.++...++++.+--.+.|
T Consensus 342 f-lpeaft~df--~vhwae-hpirpefaestyflykat~dp~yl~v~k~iidninkyakvpcg 400 (587)
T KOG2430|consen 342 F-LPEAFTHDF--QVHWAE-HPIRPEFAESTYFLYKATGDPHYLEVAKQIIDNINKYAKVPCG 400 (587)
T ss_pred c-ChHhhcccc--eeeccc-CCCChhhhhhheeeecccCCchHHHHHHHHHHHHhhheeCCch
Confidence 2 222322221 123222 2433 33445589999999999999999999865443333
No 70
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=50.27 E-value=78 Score=33.54 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCc-ccccCCchh-hhhhhhcCCcccccchhhhhHHHHHHHHHH
Q 006861 184 HYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSG-YLSAFPTEQ-FDRLEALIPVWAPYYTIHKILAGLLDQYTY 261 (628)
Q Consensus 184 ~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dG-Yl~~~~~~~-~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~ 261 (628)
.=|.-||.+|..++|+++++-+.+-|+.|+++|- ++| |=.-||... +.+.--.+++ + +.+ ++.=|.+.++.
T Consensus 43 ~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQy--pnGGWPQ~yP~~~~Y~~~ITfNDd-a---m~~-vl~lL~~v~~~ 115 (289)
T PF09492_consen 43 TEIRFLARVYQATKDPRYREAFLKGLDYLLKAQY--PNGGWPQFYPLRGGYHDHITFNDD-A---MVN-VLELLRDVAEG 115 (289)
T ss_dssp HHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS---TTS--BSECS--SGGGGSEE-GGG-H---HHH-HHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhC--CCCCCCccCCCCCCCCCceEEccH-H---HHH-HHHHHHHHHhh
Confidence 4456689999999999999999999999999999 654 433333210 0000000000 0 000 22223466666
Q ss_pred cCCH---------HHHHHHHHHHHHHHHHh
Q 006861 262 ADNA---------EALRMTTWMVEYFYNRV 282 (628)
Q Consensus 262 tG~~---------kaL~ia~~~ad~~~~~~ 282 (628)
.++- ++.+.+.|..|+|.+.-
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQ 145 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQ 145 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 89999999999997653
No 71
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=49.75 E-value=1.5e+02 Score=31.32 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHhhcCCcccccCC
Q 006861 182 VGHYLSASALMWAST--HNESLKEKMSAVVSALSACQKEIGSGYLSAFP 228 (628)
Q Consensus 182 ~G~~LsalA~~ya~t--~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~ 228 (628)
.+--+.+++.+.... ++....+.+++.++.|.++|. +||-+..+.
T Consensus 94 Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~--~dG~f~~~~ 140 (348)
T cd02889 94 TAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQN--SNGGFAAFE 140 (348)
T ss_pred hHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhcc--CCCCEeeec
Confidence 345555665544343 246778899999999999999 999887653
No 72
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=39.20 E-value=73 Score=27.55 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=35.8
Q ss_pred HHHH--HHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 006861 205 MSAV--VSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNR 281 (628)
Q Consensus 205 ~d~~--Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~ 281 (628)
.+++ ++.|.++|. +||-++..+... . ...+. ...++ .+....|.++..+.+.+..+|+.+.
T Consensus 42 ~~~~~~~~~L~~~q~--~dGg~~~~~~~~------~----~~~~~---t~~~l-~~l~~~~~~~~~~~~~~a~~~l~~~ 104 (113)
T PF13249_consen 42 RDRAAAVEWLLSQQN--PDGGWGSNPDGG------P----PDVYT---TYVAL-AALELLGRPDDEEAVRKAVDWLLSC 104 (113)
T ss_dssp HHHHHHHHHHHHHB---TTSGBBSSTTTT-----------BSHHH---HHHHH-HHHHHHT-GGCHTTHCCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC--CCCCccCCCCCC------C----ccHHH---HHHHH-HHHHHcCCCcccHHHHHHHHHHHHh
Confidence 5666 999999999 999887765311 0 01111 22333 2334456555467888889999753
No 73
>PHA02811 putative host range protein; Provisional
Probab=39.17 E-value=44 Score=32.85 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=29.2
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCCC--C-CCcEEEECCeecCCC
Q 006861 551 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLP 592 (628)
Q Consensus 551 ~v~i~v~~~~~~~~ftL~lRIP~Wa~--~-~~~~v~VNG~~~~~~ 592 (628)
.+.|.++.. +.-.|-+-|| |.|.. . ...++++||..+...
T Consensus 32 ~I~Lk~~~~-Kk~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~ 74 (197)
T PHA02811 32 TINIKVNQQ-KKLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTT 74 (197)
T ss_pred EEEEEeCCc-cEEEEEEEec-cchhhhhhccceEEEECCcEeEEE
Confidence 677777654 5666778889 99943 1 167899999988754
No 74
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=38.66 E-value=23 Score=32.69 Aligned_cols=23 Identities=17% Similarity=0.389 Sum_probs=15.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhhc
Q 006861 3 KWMCSIGFFKFLLTFLLIVSAAQ 25 (628)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (628)
||...+++++++|++|++|.|..
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHH
Confidence 68777766666666666666543
No 75
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=38.59 E-value=62 Score=35.50 Aligned_cols=110 Identities=21% Similarity=0.293 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCcCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHh-hcCCcccccCCchhhhh-hhhcCCc
Q 006861 164 GEPYGGWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQK-EIGSGYLSAFPTEQFDR-LEALIPV 241 (628)
Q Consensus 164 g~~~ggWe~~d~~l~Gh~~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~-~~~dGYl~~~~~~~~~r-~~~~~~~ 241 (628)
|+.|.|..|+|+++ || -=.+..+.=+.-++-+.+-+..|..+.+ +...||-|+-+...-.+ -++....
T Consensus 27 ge~Y~Gh~FWDtE~-------~~---~P~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~~g~~GA~yPWeS~~~G~E~t~~ 96 (370)
T PF03632_consen 27 GEGYKGHVFWDTEI-------FM---LPFFLLTHPEAARSLLNYRYRTLPQARENAREYGYKGAMYPWESARTGEECTGP 96 (370)
T ss_dssp -STTTTSB-THHHH-------CH---HHHHHHS-HHHHHHHHHHHHTTHHHHHHHHHCTT--S----SSBSS-SSB----
T ss_pred CCCcCCeeeecchH-------Hh---cchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeecccccCccccCCC
Confidence 56788999998763 11 1112234334556666777777777765 33678887754310000 0001111
Q ss_pred ccc-cchhhh---hHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHhh
Q 006861 242 WAP-YYTIHK---ILAGLLDQYTYADNAE-----ALRMTTWMVEYFYNRVQ 283 (628)
Q Consensus 242 w~p-yy~~Hk---i~aGLl~~Y~~tG~~k-----aL~ia~~~ad~~~~~~~ 283 (628)
|.. .+-.|. |--++..+|..|||.+ .++|+...|+|..++..
T Consensus 97 ~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~~ 147 (370)
T PF03632_consen 97 WPAGDYEIHINADIAYAIWQYYQATGDEEFLREYGAEILFETARFWASRVE 147 (370)
T ss_dssp HHHHTT-THHHHHHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-E
T ss_pred CCchHhhhcchHHHHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHheE
Confidence 221 222332 4556678999999864 78899999999988764
No 76
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=38.29 E-value=1.2e+02 Score=35.68 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=39.4
Q ss_pred CCCCCCCC-------CcCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCcccccCC
Q 006861 166 PYGGWEEP-------SCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFP 228 (628)
Q Consensus 166 ~~ggWe~~-------d~~l~Gh~~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~ 228 (628)
..|||-|. |+|= .+.-|.|+... ....++...+.+++-|+.|...|. +||.+++|.
T Consensus 364 ~~GGW~f~~~~~~~pd~dd----Ta~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~~Qn--~dGgw~af~ 426 (635)
T TIGR01507 364 EPGGWAFQFDNVYYPDVDD----TAVVVWALNGL-RLPDERRRRDAMTKAFRWIAGMQS--SNGGWGAFD 426 (635)
T ss_pred CCCccCCCCCCCCCCCchh----HHHHHHHHHHc-CCCccccchHHHHHHHHHHHHhcC--CCCCEeccc
Confidence 45788664 3331 45566766553 222455677899999999999999 999998874
No 77
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=38.12 E-value=1.7e+02 Score=34.47 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=39.4
Q ss_pred CCCCCCCC-------CcCCCccchHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHhhcCCcccccCC
Q 006861 166 PYGGWEEP-------SCELRGHFVGHYLSASALMWASTH--NESLKEKMSAVVSALSACQKEIGSGYLSAFP 228 (628)
Q Consensus 166 ~~ggWe~~-------d~~l~Gh~~G~~LsalA~~ya~t~--D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~ 228 (628)
..|||-|. +++. .+.-|.|+..+....+ +....+.+++-|+.|..+|. +||-+.+|.
T Consensus 358 ~~GGW~fs~~~~~~pd~d~----Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn--~dGgf~~y~ 423 (634)
T cd02892 358 RKGGWAFSTANQGYPDSDD----TAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQN--SNGGFAAFE 423 (634)
T ss_pred CCCCCCCCCCCCCCCCcCc----hHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccC--CCCCEeeec
Confidence 35788664 3443 4566666665443322 45677899999999999999 899887663
No 78
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=38.11 E-value=88 Score=37.80 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=43.8
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCCCCCCcEEEECCeecCCC-CCCCEEEEEeecCCCCEEEEEe
Q 006861 551 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLP-SPGNFLSVTKTWSSDDKLTIQL 614 (628)
Q Consensus 551 ~v~i~v~~~~~~~~ftL~lRIP~Wa~~~~~~v~VNG~~~~~~-~~~gy~~I~R~W~~GD~I~L~l 614 (628)
+++.+|+.. .++-.|.+-||-- + |.+++|||++++.. +.++|.-|.-. ++..+|+++.
T Consensus 773 ~i~~~i~~~--~~~~~l~~sipy~-~--GW~~~vdGk~~~~~~~~~~f~g~~l~-~G~h~i~~~y 831 (843)
T PF09586_consen 773 HISGTITAT--SKDGYLVLSIPYD-K--GWKAYVDGKKVEIEKVNGGFMGVPLP-KGEHQIELKY 831 (843)
T ss_pred EEEEEEEec--CCCcEEEEEeccC-C--CCEEEECCEEccHhhhcCeEEEEEEc-CCceEEEEEE
Confidence 677788762 2345788889985 2 89999999999864 46889999876 4447888876
No 79
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=35.33 E-value=62 Score=28.74 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=23.4
Q ss_pred CcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecCceeE
Q 006861 579 GAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRT 620 (628)
Q Consensus 579 ~~~v~VNG~~~~~~~~~gy~~I~R~W~~GD~I~L~lpm~~r~ 620 (628)
+-.|.|||+.++.. ..-+.||+|+|.|.-....
T Consensus 33 ~GrV~vNG~~aKpS---------~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 33 GGRVKVNGQRAKPS---------KEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred CCeEEECCEEcccc---------cccCCCCEEEEEeCCcEEE
Confidence 45899999987532 2236799999999765544
No 80
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=34.31 E-value=4.5e+02 Score=30.37 Aligned_cols=117 Identities=12% Similarity=0.160 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccc---------cchhhhhHHHHHHHHHHcCCHHHH
Q 006861 198 NESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP---------YYTIHKILAGLLDQYTYADNAEAL 268 (628)
Q Consensus 198 D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~p---------yy~~Hki~aGLl~~Y~~tG~~kaL 268 (628)
|.+|..-++++.+.|+-+-+ .+.|- ||+.- ++...|.+ -...-.++.|.+. +.|||+++-
T Consensus 150 ~g~LLrLA~dlA~RLLPAF~-T~TGi--Py~~v------NLk~GV~~~Et~~tctAg~gslllEFg~LS--rLTGD~~fE 218 (622)
T KOG2429|consen 150 DGELLRLAEDLARRLLPAFE-TPTGI--PYGRV------NLKYGVDKGETTETCTAGAGSLLLEFGTLS--RLTGDPKFE 218 (622)
T ss_pred CchHHHHHHHHHHhhccccc-CCCCC--Cccee------ehhcCCCCCCCcceecccccceeeehhhhH--HhhCCcHHH
Confidence 45788888899988886665 35554 33321 11111111 0111125677753 679999999
Q ss_pred HHHHHHHHHHHHHhhh--hhhcc--cccccccccccccc-chH---HHHHHHHHHcCCHHHHHHH
Q 006861 269 RMTTWMVEYFYNRVQN--VIKKY--SIERHWQTLNEEAG-GMN---DVLYKLFCITQDPKHLMLA 325 (628)
Q Consensus 269 ~ia~~~ad~~~~~~~~--~~~~~--~~~~~~~~l~~e~G-Gm~---~~L~~LY~~TGd~ryL~lA 325 (628)
++|+++.+-+.++=.+ +.+.. ...+.|.....-.| |+. |-|++-|=.-||++||++=
T Consensus 219 ~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lemf 283 (622)
T KOG2429|consen 219 KVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEMF 283 (622)
T ss_pred HHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHHHHH
Confidence 9999999988765332 11110 11233432122222 443 6778888889999999874
No 81
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=34.26 E-value=43 Score=33.32 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=31.4
Q ss_pred EEeccCCCCCC-------CcEEEECCeecCCCCCCCEEEE-EeecCCCCEEEEEecCcee
Q 006861 568 NLRIPTWTSSN-------GAKATLNGQDLPLPSPGNFLSV-TKTWSSDDKLTIQLPLTLR 619 (628)
Q Consensus 568 ~lRIP~Wa~~~-------~~~v~VNG~~~~~~~~~gy~~I-~R~W~~GD~I~L~lpm~~r 619 (628)
-+|||+|-.++ -+.++|||. .|.+.+ +|+-.+.|.|+|-=|+.+|
T Consensus 145 gi~Iegf~~~~RtfG~v~~yp~~Ingi-------~gaiV~P~rT~h~~dviEIIapv~LR 197 (214)
T COG1339 145 GIRIEGFKTEDRTFGGVKAYPCKINGI-------EGAIVIPERTHHPTDVIEIIAPVKLR 197 (214)
T ss_pred CEeeCCCCCCCceeccEEEEEEEEcCc-------ceEEEeeccccCCcceEEEEccHhHH
Confidence 47999997431 246788982 235555 4777778888888888776
No 82
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=33.97 E-value=76 Score=35.15 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=63.5
Q ss_pred CCcchhhHHHHHHHHhCChHHHHHHHHHHHHhhhcCceeecCCCCCCCCCCCcccccCCCCCccccchHHHHHHH-HHHh
Q 006861 351 THIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKV-SRHL 429 (628)
Q Consensus 351 thip~~~G~a~~Y~~TGD~~y~~a~~~~~~~v~~~~~y~TGG~g~~E~f~~~~~L~~~~~~~~~EtCas~~~l~~-~~~L 429 (628)
+.|-+.=|..-.|-++|++.|+..|..+=|.+...-.-.++.-=++=.......-+. .....-+-+-+..+++ .+.|
T Consensus 176 tTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p--~~~~~SStaEvttiQlEfr~L 253 (546)
T KOG2431|consen 176 TTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPP--RWTGDSSTAEVTTIQLEFRYL 253 (546)
T ss_pred hhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCC--CCCCccchhhheeeeeeHHHH
Confidence 446666788888999999999886665555554322223322111111000000000 0112222233333333 3789
Q ss_pred hhccCCchhHHHHHHHHhhhhhccCCC-CCCCcEEEEccC
Q 006861 430 FRWTKEIAYADYYERSLTNGVLGIQRG-TEPGVMIYLLPL 468 (628)
Q Consensus 430 ~~~tgd~~YaD~~Er~lyN~ila~~~~-~d~~~~~Y~~pl 468 (628)
-++|||++|-+..|++. -+|.+--.- -||-.-+|.||-
T Consensus 254 s~ltgd~kY~~~a~kv~-ehih~~~~~~~dGLvPi~in~~ 292 (546)
T KOG2431|consen 254 SRLTGDPKYEELAEKVT-EHIHGLGKKKHDGLVPIFINPN 292 (546)
T ss_pred HhhcCCchHHHHHHHHH-HHHhccCccccCCeeeEEEcCC
Confidence 99999999999999986 444432111 156677888874
No 83
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=32.39 E-value=9.5 Score=33.29 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccccchhhhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Q 006861 205 MSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQ 283 (628)
Q Consensus 205 ~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~pyy~~Hki~aGLl~~Y~~tG~~kaL~ia~~~ad~~~~~~~ 283 (628)
|++.|+.|.+.|. +||..+.. . . ...+ +...++.++...|+.+..+.+.+.++|+.+...
T Consensus 1 i~~~~~~l~~~Q~--~dG~W~~~-~------~------~~~~----~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~ 60 (109)
T PF13243_consen 1 IKRAAEWLLSQQN--PDGSWGYN-W------G------SDVF----VTAALILALAAAGDAAVDEAIKKAIDWLLSHQN 60 (109)
T ss_dssp -----------------------------------------------------------TS-SSBSSHHHHHHHHH---
T ss_pred Ccccccccccccc--cccccccc-c------c------cccc----ccccccccccccCCCCcHHHHHHHHHHHHHhcC
Confidence 4678899999999 99986321 1 0 0011 223334455556777888889999999987643
No 84
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=31.64 E-value=2.6e+02 Score=23.60 Aligned_cols=21 Identities=19% Similarity=0.567 Sum_probs=15.8
Q ss_pred eEEEEeccCCCCCCCcEEEECCeecC
Q 006861 565 TSLNLRIPTWTSSNGAKATLNGQDLP 590 (628)
Q Consensus 565 ftL~lRIP~Wa~~~~~~v~VNG~~~~ 590 (628)
.+|.|.+| . +++|+|||++..
T Consensus 3 a~itv~vP---a--dAkl~v~G~~t~ 23 (75)
T TIGR03000 3 ATITVTLP---A--DAKLKVDGKETN 23 (75)
T ss_pred eEEEEEeC---C--CCEEEECCeEcc
Confidence 36778888 2 689999998754
No 85
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=30.24 E-value=76 Score=30.16 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=29.0
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCCC---CCCcEEEECCeecCCC
Q 006861 551 RVTLTFSSKGSGLTTSLNLRIPTWTS---SNGAKATLNGQDLPLP 592 (628)
Q Consensus 551 ~v~i~v~~~~~~~~ftL~lRIP~Wa~---~~~~~v~VNG~~~~~~ 592 (628)
.+.|.++.. +.-.|-+-|| |.|.. -....+++||..++..
T Consensus 32 ~I~lk~~~~-K~i~f~~Il~-pdwseI~~vKpi~~~~Ng~~id~~ 74 (149)
T PF03287_consen 32 TIKLKSKET-KKINFIFILR-PDWSEIDEVKPIRMKLNGKSIDLE 74 (149)
T ss_pred EEEEEeCCc-cEEEEEEEEc-cChhhcccccceEEEECCeEeeEE
Confidence 567777653 5667788889 99953 1257899999988763
No 86
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=28.52 E-value=3.8e+02 Score=31.68 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=60.0
Q ss_pred CCCCCCCC-------CcCCCccchHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhh
Q 006861 166 PYGGWEEP-------SCELRGHFVGHYLSASALMWASTH---NESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRL 235 (628)
Q Consensus 166 ~~ggWe~~-------d~~l~Gh~~G~~LsalA~~ya~t~---D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~ 235 (628)
..|||-|. ++|- .+.-|+|+..+-.... ++.-.+.+.+-|+.|+.+|. +||=+++|....-.+|
T Consensus 357 ~~GGW~f~~~~~~~pdsD~----Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn--~dGGw~~y~~~~~~~~ 430 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDC----TAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQN--EDGGFGTYERQRGPRV 430 (634)
T ss_pred CCCccccccCCCCCCcccc----HHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcC--CCCCEeccCCCCcHHH
Confidence 45788664 3332 5667777665322111 11234788999999999999 8887777753211111
Q ss_pred ----------hhc-CCcccccchhhhhHHHHHHHHHHc-C---CHHHHHHHHHHHHHHHHHh
Q 006861 236 ----------EAL-IPVWAPYYTIHKILAGLLDQYTYA-D---NAEALRMTTWMVEYFYNRV 282 (628)
Q Consensus 236 ----------~~~-~~~w~pyy~~Hki~aGLl~~Y~~t-G---~~kaL~ia~~~ad~~~~~~ 282 (628)
.+. .+.=-+.+|.|-|. +| ..+... . +++..+.+.+.++|+.+..
T Consensus 431 l~~~~~~~~f~~~~~d~~~~d~Ta~~l~-aL-~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q 490 (634)
T TIGR03463 431 LELLNPSEMFSTCMTDVSYVECTSSCLQ-AL-AAWRKHHPHVPDGRITRAISRGVRFLRSRQ 490 (634)
T ss_pred HhcCChHHhhcccccCCCcCcHHHHHHH-HH-HHHhhcCcchhhhHHHHHHHHHHHHHHHhc
Confidence 110 11112466666444 45 333321 1 2344556788889986553
No 87
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=28.25 E-value=1.7e+02 Score=29.32 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=35.4
Q ss_pred eeEEEEeccCCC----CCCCcEEEECCeecCCC-CCCCEEEEE-----------eecCCCCEEEEEecCce
Q 006861 564 TTSLNLRIPTWT----SSNGAKATLNGQDLPLP-SPGNFLSVT-----------KTWSSDDKLTIQLPLTL 618 (628)
Q Consensus 564 ~ftL~lRIP~Wa----~~~~~~v~VNG~~~~~~-~~~gy~~I~-----------R~W~~GD~I~L~lpm~~ 618 (628)
...|.++.|.+. .. +-.|.|||.-.+.. ..++..++. ..|+.||.|-|+.+|++
T Consensus 21 ~~~l~i~~~~~~~~~l~~-G~SIAvnGvCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLEral~~ 90 (200)
T TIGR00187 21 FISLVVNLADHMLDDLEL-GDSIAVNGVCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIERALKA 90 (200)
T ss_pred cEEEEEEeChHHhccccc-CCEEEECcEEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEcccCCC
Confidence 345555555321 22 67999999876642 245555655 37899999999888765
No 88
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=27.49 E-value=1.9e+02 Score=28.73 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=28.0
Q ss_pred CcEEEECCeecCCC-CCCCEEEEE-----------eecCCCCEEEEEecCce
Q 006861 579 GAKATLNGQDLPLP-SPGNFLSVT-----------KTWSSDDKLTIQLPLTL 618 (628)
Q Consensus 579 ~~~v~VNG~~~~~~-~~~gy~~I~-----------R~W~~GD~I~L~lpm~~ 618 (628)
+..|.|||.-.+.. ..++..++. ..|+.||.|-|+-+|++
T Consensus 38 g~SIAvnGvcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~~VNLEra~~~ 89 (194)
T PRK09289 38 GDSIAVNGVCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGDRVNLERALRL 89 (194)
T ss_pred CCEEEEccEEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCCEEEEeEcccC
Confidence 67899999876542 234444432 35889999999888765
No 89
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=26.98 E-value=1.8e+02 Score=28.84 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=39.2
Q ss_pred CeeeEEEEeccCCCCC---CCcEEEECCeecCCC-CCCCEEEEE-----------eecCCCCEEEEEecCcee
Q 006861 562 GLTTSLNLRIPTWTSS---NGAKATLNGQDLPLP-SPGNFLSVT-----------KTWSSDDKLTIQLPLTLR 619 (628)
Q Consensus 562 ~~~ftL~lRIP~Wa~~---~~~~v~VNG~~~~~~-~~~gy~~I~-----------R~W~~GD~I~L~lpm~~r 619 (628)
+....+.+++|..... .+-.|.|||.-.+.. ..++...+. ..|+.||+|-|+.++--|
T Consensus 115 ~~~~~~~i~~~~~~~~~l~~kgSIavdGvsLTV~~~~~~~f~v~lipeTl~~T~l~~~k~G~~VNlE~D~~~k 187 (194)
T PRK09289 115 GNSVEFRFKAPAELAKYIVEKGSIAVDGVSLTVNEVDGDRFSVNLIPHTLENTTLGEKKVGDRVNLEIDLLAK 187 (194)
T ss_pred CCcEEEEEECChHHhcccccCCEEEEccEEEEEEEEcCCEEEEEEeHHHHhhCccccCCCCCEEEEeEehHHH
Confidence 3456788888854311 156889999876642 244555554 578999999999987544
No 90
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=25.56 E-value=1.8e+02 Score=29.21 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=28.2
Q ss_pred CcEEEECCeecCCC-CCCCEEEEE-----------eecCCCCEEEEEecCce
Q 006861 579 GAKATLNGQDLPLP-SPGNFLSVT-----------KTWSSDDKLTIQLPLTL 618 (628)
Q Consensus 579 ~~~v~VNG~~~~~~-~~~gy~~I~-----------R~W~~GD~I~L~lpm~~ 618 (628)
+-.|.|||.-.+.. ..++..++. ..|+.||.|-|+-+|++
T Consensus 39 g~SIavnGVcLTV~~v~~~~f~~~lipeTl~~T~l~~~~~G~~VNlEral~~ 90 (206)
T PRK13020 39 GASVAVNGVCLTVTKIEGDRVFFDVMEETLRLTNLADLRVGDRVNIERSAKF 90 (206)
T ss_pred CCEEEECCEEEEEEEECCCEEEEEEhHHHHhhCchhhccCCCEEeeEecccC
Confidence 56899999876642 234444433 36889999999988876
No 91
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=25.32 E-value=1.9e+02 Score=30.62 Aligned_cols=88 Identities=7% Similarity=-0.013 Sum_probs=44.4
Q ss_pred hcCC-hHHHHHHHHHHHHHHHHHh-hcCCcccccCCchhhhh--hhhcCCcccccchhhhhHHHHHHHHHHc--CCHHHH
Q 006861 195 STHN-ESLKEKMSAVVSALSACQK-EIGSGYLSAFPTEQFDR--LEALIPVWAPYYTIHKILAGLLDQYTYA--DNAEAL 268 (628)
Q Consensus 195 ~t~D-~~L~~k~d~~Vd~l~~~Q~-~~~dGYl~~~~~~~~~r--~~~~~~~w~pyy~~Hki~aGLl~~Y~~t--G~~kaL 268 (628)
.++. ++..+.+++.++.|.++|. ..++|....++...-.. +......|.-....-.++.+|+.+.... |+....
T Consensus 37 ~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~ 116 (348)
T cd02889 37 EAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSR 116 (348)
T ss_pred HcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhH
Confidence 3444 5788999999999999993 11222111111100000 0000000000001122455665555554 346667
Q ss_pred HHHHHHHHHHHHHh
Q 006861 269 RMTTWMVEYFYNRV 282 (628)
Q Consensus 269 ~ia~~~ad~~~~~~ 282 (628)
+.+.+..+|+.+..
T Consensus 117 ~~i~~a~~~L~~~Q 130 (348)
T cd02889 117 ERLYDAVDWLLSMQ 130 (348)
T ss_pred HHHHHHHHHHHHhc
Confidence 88999999998753
No 92
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=24.29 E-value=1.2e+03 Score=27.40 Aligned_cols=81 Identities=12% Similarity=0.161 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCCcccccCCchh----hhh------hhhcC-CcccccchhhhhHHHHHHHHHHcCCH
Q 006861 197 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQ----FDR------LEALI-PVWAPYYTIHKILAGLLDQYTYADNA 265 (628)
Q Consensus 197 ~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~----~~r------~~~~~-~~w~pyy~~Hki~aGLl~~Y~~tG~~ 265 (628)
+++...+.+++.++.|.+.|. +||-.++|.... ... +.+.. +.=.+-+|.+-|+ +|. .+.. +.+
T Consensus 382 ~~~~~~~~l~~a~~~Ll~~Qn--~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~-aL~-~~~~-r~~ 456 (621)
T TIGR01787 382 DEHVKRDRLRDAVNWILGMQS--SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQ-ALG-AFGH-RAD 456 (621)
T ss_pred cccccHHHHHHHHHHHHHHcC--CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHH-HHH-HhcC-ccH
Confidence 456677889999999999999 999888774311 011 11110 0001235555343 552 2221 123
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006861 266 EALRMTTWMVEYFYNRV 282 (628)
Q Consensus 266 kaL~ia~~~ad~~~~~~ 282 (628)
...+.+.+..+|+.+..
T Consensus 457 ~~~~~i~rAl~~L~~~Q 473 (621)
T TIGR01787 457 EIRNVLERALEYLRREQ 473 (621)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 45678999999997654
No 93
>PHA02919 host-range protein; Provisional
Probab=21.89 E-value=1.4e+02 Score=28.30 Aligned_cols=40 Identities=15% Similarity=0.349 Sum_probs=26.1
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCCC--C-CCcEEEECCeecCCC
Q 006861 551 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLP 592 (628)
Q Consensus 551 ~v~i~v~~~~~~~~ftL~lRIP~Wa~--~-~~~~v~VNG~~~~~~ 592 (628)
.+.|.++.. +.-.|-+-|| |.|.. + .+..+.+||..++..
T Consensus 31 ~i~lk~~~~-K~~~fi~vLe-PdWseId~vKpi~m~~Ng~~v~v~ 73 (150)
T PHA02919 31 KLKIISNDY-KKLKFRFIIR-PDWSEIDEVKGLTVFANNYAVKVN 73 (150)
T ss_pred EEEEEECCc-eEEEEEEEEc-cChhhhhcccceEEEECCEEEEEE
Confidence 577777653 4444555555 99953 1 157899999988753
No 94
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=20.90 E-value=7.5e+02 Score=29.35 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=63.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCccc-ccCCchhhhhhhhcCCcccc---cchhhhhHHHHHHHHHHcCCH
Q 006861 190 ALMWASTHNESLKEKMSAVVSALSACQKEIGSGYL-SAFPTEQFDRLEALIPVWAP---YYTIHKILAGLLDQYTYADNA 265 (628)
Q Consensus 190 A~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYl-~~~~~~~~~r~~~~~~~w~p---yy~~Hki~aGLl~~Y~~tG~~ 265 (628)
++++...++ .+.+.++.+.|.+.|. ++|++ ..|.. +....|.. =-++..|+++- .+++ .|..
T Consensus 304 a~AL~~~G~---~~~a~~~~~~l~~~~~--~~G~~lq~y~v-------dG~~~~~~iQlD~~g~~i~~~~-~l~~-~~~~ 369 (648)
T TIGR01535 304 ANAFLAAGD---VDSALRSLDYLAKVQQ--DNGMFPQNSWV-------DGKPYWTGIQLDETAFPILLAY-RLHR-YDHA 369 (648)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHhc--cCCCcCceecc-------CCCCCCCCccccHHHHHHHHHH-HHHH-cCcH
Confidence 333345565 5667778888888999 88874 22211 12222321 01122344332 2333 4556
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchH-----------HHHHHHHHHcCCH----HHHHHHhhc
Q 006861 266 EALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMN-----------DVLYKLFCITQDP----KHLMLAHLF 328 (628)
Q Consensus 266 kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~-----------~~L~~LY~~TGd~----ryL~lA~~f 328 (628)
...+++++++||+.+.... +.++.|+ |.+|.. ...+++-+..|++ +|++.|+.+
T Consensus 370 ~~~~~vk~aadfl~~~~p~-----p~~d~WE----er~g~~~~T~a~v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~i 438 (648)
T TIGR01535 370 FYDKMLKPAADFIVKNGPK-----TGQERWE----EIGGYSPSTLAAEIAGLTAAADIAEQNGDAGSAQKYRETADNW 438 (648)
T ss_pred HHHHHHHHHHHHHHHcCCC-----CCCCccc----ccCCcCchhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778899999999875321 2234453 333221 2345777777774 577777665
No 95
>PLN02993 lupeol synthase
Probab=20.80 E-value=2.6e+02 Score=33.79 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHhhcCCcccccCCchhhhhhhhcCCcccc--cchhhhhHHHHH
Q 006861 182 VGHYLSASALMWASTHN---ESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP--YYTIHKILAGLL 256 (628)
Q Consensus 182 ~G~~LsalA~~ya~t~D---~~L~~k~d~~Vd~l~~~Q~~~~dGYl~~~~~~~~~r~~~~~~~w~p--yy~~Hki~aGLl 256 (628)
.++-|+|++..-....+ +++.+.+++-|+.|++.|+ +||=... .|.. .|..-..+.||.
T Consensus 566 T~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~--~DGSW~G--------------~Wgv~y~YgT~~aL~aL~ 629 (763)
T PLN02993 566 TSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQT--PDGSWYG--------------NWGICFIYATWFALGGLA 629 (763)
T ss_pred HHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcC--CCCCccc--------------ccccccCcHHHHHHHHHH
Confidence 68889999875332222 4567889999999999999 8874311 1222 222222445552
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHHHHHh
Q 006861 257 DQYTYADNA-EALRMTTWMVEYFYNRV 282 (628)
Q Consensus 257 ~~Y~~tG~~-kaL~ia~~~ad~~~~~~ 282 (628)
..|.. .--..+.|.++|+.+..
T Consensus 630 ----a~G~~~~~~~~IrrAv~fLls~Q 652 (763)
T PLN02993 630 ----AAGKTYNDCLAMRKGVHFLLTIQ 652 (763)
T ss_pred ----HcCCCCCCcHHHHHHHHHHHHhc
Confidence 34443 11246788999997653
No 96
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=20.74 E-value=2.1e+02 Score=28.81 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=38.2
Q ss_pred CeeeEEEEeccCCCCC---CCcEEEECCeecCCC-CCCCEEEEE-----------eecCCCCEEEEEecCce
Q 006861 562 GLTTSLNLRIPTWTSS---NGAKATLNGQDLPLP-SPGNFLSVT-----------KTWSSDDKLTIQLPLTL 618 (628)
Q Consensus 562 ~~~ftL~lRIP~Wa~~---~~~~v~VNG~~~~~~-~~~gy~~I~-----------R~W~~GD~I~L~lpm~~ 618 (628)
+..+.+.+++|.+... .+..|.|||...+.. ..+..+.+. ..++.||.|-|+.++--
T Consensus 116 ~~~~~~~i~~~~~~~~~i~~kgSIaidGvsLTV~~v~~~~f~v~lIp~Tl~~T~l~~~k~G~~VNiE~D~~~ 187 (206)
T PRK13020 116 EENYDIRFRVPPEWMKYIFAKGFIGVNGCSLTVGEVDESEFEVHLIPETLRATNLGAKKVGDLVNIEIDSQT 187 (206)
T ss_pred CCCEEEEEEEChHHhcccccCCEEEEeeEEEEEEeEcCCEEEEEEeHHHHhhcccccCCCCCEEEEeEeccc
Confidence 4567788888977431 156888999876642 234444443 46789999999998543
No 97
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=20.69 E-value=7.2e+02 Score=29.08 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCCCCCcCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCc------ccccCCchhh-hhhhhcCCc
Q 006861 169 GWEEPSCELRGHFVGHYLSASALMWASTHNESLKEKMSAVVSALSACQKEIGSG------YLSAFPTEQF-DRLEALIPV 241 (628)
Q Consensus 169 gWe~~d~~l~Gh~~G~~LsalA~~ya~t~D~~L~~k~d~~Vd~l~~~Q~~~~dG------Yl~~~~~~~~-~r~~~~~~~ 241 (628)
+|.+..+. .+.++...++ .+.+.+.++.+.+.|. +|| |+..-+...- ....+....
T Consensus 295 ~W~RD~~~------------~a~Al~~~G~---~~~a~~~l~~l~~~q~--~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~ 357 (616)
T TIGR01577 295 CWGRDASY------------IATALDRAGY---HDRVDRFFRWAMQTQS--RDGSWQQRYYLNGRLAPLQWGLQIDETGS 357 (616)
T ss_pred eccccHHH------------HHHHHHHCCC---HHHHHHHHHHHHHhhC--cCCCcceEEecCCCCCCCCCCccccchhH
Q ss_pred ccccchhhhhHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchH-----------
Q 006861 242 WAPYYTIHKILAGLLDQYTYADNA----EALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMN----------- 306 (628)
Q Consensus 242 w~pyy~~Hki~aGLl~~Y~~tG~~----kaL~ia~~~ad~~~~~~~~~~~~~~~~~~~~~l~~e~GGm~----------- 306 (628)
++-++..+++.+|+. +..+.++++++|+.+...+.++....+.+ ++++|..
T Consensus 358 ---------~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lW-----Eer~G~~~~t~a~~~aAL 423 (616)
T TIGR01577 358 ---------ILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLW-----EEREGVFTYTASAVYGGL 423 (616)
T ss_pred ---------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccc-----eecCCccCccHHHHHHHH
Q ss_pred HHHHHHHHHcCC----HHHHHHHhhc
Q 006861 307 DVLYKLFCITQD----PKHLMLAHLF 328 (628)
Q Consensus 307 ~~L~~LY~~TGd----~ryL~lA~~f 328 (628)
...++|.+..|| ++|.+.|+.+
T Consensus 424 ~~aa~lA~~lGd~~~a~~~~~~Ad~i 449 (616)
T TIGR01577 424 DAAAAVADKLGEKRLAQNWKKAAEFI 449 (616)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
No 98
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=20.65 E-value=1.1e+02 Score=24.20 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=19.9
Q ss_pred CcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEec
Q 006861 579 GAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLP 615 (628)
Q Consensus 579 ~~~v~VNG~~~~~~~~~gy~~I~R~W~~GD~I~L~lp 615 (628)
...|.+||+-++-.. |... .-++||+|+|-=+
T Consensus 31 ~vav~vNg~iv~r~~---~~~~--~l~~gD~vei~~~ 62 (66)
T PRK05659 31 RVAVEVNGEIVPRSQ---HAST--ALREGDVVEIVHA 62 (66)
T ss_pred eEEEEECCeEeCHHH---cCcc--cCCCCCEEEEEEE
Confidence 567889997665321 2222 2368999998644
Done!