BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006862
(628 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/610 (63%), Positives = 466/610 (76%), Gaps = 10/610 (1%)
Query: 1 MPEAPKNSYPSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLN 60
M P S P + E + K L+FIE +T N D VQ++VL+EIL RN EYL+R L
Sbjct: 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLE 60
Query: 61 GHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPT 120
G T RE+FK +PVI YED+Q +I RIANGD S IL + PISEFLTSSGTS GERKLMPT
Sbjct: 61 GSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPT 120
Query: 121 IXXXXXXXXXXXXXXMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSC 180
I MPVM+ ++PGLDKGKG+YFLF+KSE +TPGGL+ARPVLTSYYKS
Sbjct: 121 IQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSE 180
Query: 181 HFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRF 240
HFK RPYDPY YTSPNE ILC DS+QSMY+Q+LCG+ + K+VLR+GAVFASG +RAIRF
Sbjct: 181 HFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240
Query: 241 LEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRL 300
L+ +W + DIRTGT+ +ITDPSVR+ V +LKP+P+LAD + EC KD W+GIITR+
Sbjct: 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRI 300
Query: 301 WPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTL 360
WPNTKY+DVIVTG M+QYIP LDYYS GLPL CTMYASSECYFG+NLNP+ KPSEVSYT+
Sbjct: 301 WPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTI 360
Query: 361 VPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYR 420
+P MAYFEFLP H ++ S+P S + R LVDL V++G+EYELV+TTYAGLYR
Sbjct: 361 MPNMAYFEFLP-HEHS------SIPLSRDSPPR--LVDLAHVEVGKEYELVITTYAGLYR 411
Query: 421 YRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVS 480
YRVGD+LRV GF N APQF+F+ RKNV+LSIDSDKTDE ELQ AV NA L + +V
Sbjct: 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVV 471
Query: 481 EYTSYADTTTVPGHYVLYWELSLNGTTPIPP-SVFEDCCLTIEESLNSVYRQGRVCDKSI 539
EYTS+ADT T+PGHYV+YWEL + + P + CCL +EESLNSVYRQGRV D SI
Sbjct: 472 EYTSFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSI 531
Query: 540 GPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPK 599
GPLEI++V+ GTF++LMDYAIS GASINQYK PRCV F PI+ELL+SRVVS++FSP P
Sbjct: 532 GPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPH 591
Query: 600 WVAGHKQWSS 609
W ++ ++
Sbjct: 592 WTPARRRAAA 601
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 542 bits (1396), Expect = e-154, Method: Compositional matrix adjust.
Identities = 275/590 (46%), Positives = 390/590 (66%), Gaps = 28/590 (4%)
Query: 13 YSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTM 72
+ ++E +K+L+ ++TSN +Q +L EI+ N EYLQR L D+E FKK +
Sbjct: 11 FDINETFEKQLK---DLTSNVKSIQDNLLEEIITPNTKTEYLQR-FLIDRFDKELFKKNV 66
Query: 73 PVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIXXXXXXXXXXX 132
P+++YEDI+ ++R+ NG++S ++ ++ I+ FL SSGTSGG +K+MP
Sbjct: 67 PIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIY 126
Query: 133 XXXMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTN 192
M V+++ + G+++GKGM FLF K E+ TP GL AR +SY+KS +FK RP + Y +
Sbjct: 127 DLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYS 186
Query: 193 YTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDI 252
YTSP+E ILCP++ +S+Y LLCGL Q EV+R G++FAS +RAI L+ W + +I
Sbjct: 187 YTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNI 246
Query: 253 RTGTIDSQITDPSVRDAVMKILK-PNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIV 311
R+G + + +TD +++V +L P P+LAD IE C ++ W+GI+ RLWPNTKY++ +V
Sbjct: 247 RSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVV 306
Query: 312 TGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLP 371
TG+M QY+P+L+YY N LPLV T Y SSE FG+NL+PLCKP +VSYT +P M+YFEF+P
Sbjct: 307 TGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIP 366
Query: 372 VHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAG 431
++ ++ ++VDL DVKLG YE VVT +AGLYR RVGD++ V G
Sbjct: 367 ----------------MDGGDKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTG 410
Query: 432 FKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTV 491
F N APQF F+ R+NVVLSIDSDKT+E +L AV A L + ++TSYADT+T
Sbjct: 411 FYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTF 470
Query: 492 PGHYVLYWELSLNGTTPIPPSVFE-------DCCLTIEESLNSVYRQGRVCDKSIGPLEI 544
PGHYV+Y E+ + FE CCL +EESL++VY++ R D SIGPLEI
Sbjct: 471 PGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEI 530
Query: 545 KIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFS 594
++V GTFD LMD+ IS GAS QYKTPRC+K +++L + VV+ +FS
Sbjct: 531 RVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/590 (45%), Positives = 379/590 (64%), Gaps = 28/590 (4%)
Query: 13 YSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTM 72
+ ++E +K+L+ ++TSN +Q +L EI+ N EYLQR L D+E FKK +
Sbjct: 11 FDINETFEKQLK---DLTSNVKSIQDNLLEEIITPNTKTEYLQR-FLIDRFDKELFKKNV 66
Query: 73 PVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIXXXXXXXXXXX 132
P+++YEDI+ ++R+ NG++S ++ ++ I+ FL SSGTSGG +K P
Sbjct: 67 PIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIY 126
Query: 133 XXXMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTN 192
V+++ + G+++GKG FLF K E+ TP GL AR +SY+KS +FK RP + Y +
Sbjct: 127 DLRXQVITKHVKGVEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYS 186
Query: 193 YTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDI 252
YTSP+E ILCP++ +S+Y LLCGL Q EV+R G++FAS +RAI L+ W + +I
Sbjct: 187 YTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNI 246
Query: 253 RTGTIDSQITDPSVRDAVMKILK-PNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIV 311
R+G + + +TD +++V +L P P+LAD IE C ++ W+GI+ RLWPNTKY++ +V
Sbjct: 247 RSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVV 306
Query: 312 TGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLP 371
TG+ QY+P L+YY N LPLV T Y SSE FG+NL+PLCKP +VSYT P +YFEF+P
Sbjct: 307 TGSXGQYVPXLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIP 366
Query: 372 VHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAG 431
+ ++ ++VDL DVKLG YE VVT +AGLYR RVGD++ V G
Sbjct: 367 X----------------DGGDKNDVVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTG 410
Query: 432 FKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTV 491
F N APQF F+ R+NVVLSIDSDKT+E +L AV A L + ++TSYADT+T
Sbjct: 411 FYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTF 470
Query: 492 PGHYVLYWELSLNGTTPIPPSVFE-------DCCLTIEESLNSVYRQGRVCDKSIGPLEI 544
PGHYV+Y E+ + FE CCL EESL++VY++ R D SIGPLEI
Sbjct: 471 PGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVXEESLDNVYKRCRFKDGSIGPLEI 530
Query: 545 KIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFS 594
++V GTFD L D+ IS GAS QYKTPRC+K +++L + VV+ +FS
Sbjct: 531 RVVRQGTFDSLXDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/584 (39%), Positives = 340/584 (58%), Gaps = 26/584 (4%)
Query: 17 EMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGH-TD-RESFKKTMPV 74
+MN+ EF E +T N +VQK+ L EILL+N YLQ GLNG+ TD E+FK +P+
Sbjct: 15 DMNRVIDEFDE-MTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPL 73
Query: 75 ITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIXXXXXXXXXXXXX 134
+T +++ I R+ +GDTSPIL P+ SSGTS G K +P
Sbjct: 74 VTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRT 133
Query: 135 XMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYT 194
++ P D GK + F+F + + GG+ T+ Y++ +FK +
Sbjct: 134 AFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSC 193
Query: 195 SPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRT 254
SP+E I PD +Q++Y LL G+ +V V AVFA G + A R E+ W +V DI+
Sbjct: 194 SPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKD 253
Query: 255 GTIDSQITDPSVRDAVMKILKPNPKLADFIENECRK-DCWQGIITRLWPNTKYVDVIVTG 313
G + ++IT PSVR A+ K+L PNP+LA+ I +C W G+I L+PN KYV I+TG
Sbjct: 254 GVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTG 313
Query: 314 TMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVH 373
+M Y+P L +Y+ LPLV Y SSE + N+ P P E ++ ++P + YFEFLPV
Sbjct: 314 SMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS 373
Query: 374 RNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFK 433
+ ++ V L VK+G+EYE+V+T YAGLYRYR+GDV++V GF
Sbjct: 374 ETG--------------EGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFY 419
Query: 434 NKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPG 493
N PQ FICR+N++LSI+ DK E +LQ +V++A L V +++SY D +T PG
Sbjct: 420 NNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG 479
Query: 494 HYVLYWELSLNGTTPIPPSVFEDCCLTIEES-LNSVYRQGRVCDKSIGPLEIKIVEPGTF 552
HY ++WE+S G T V +DCC ++ + +++ Y R C K+IG LE+++V GTF
Sbjct: 480 HYAIFWEIS--GET--NEDVLQDCCNCLDRAFIDAGYVSSRKC-KTIGALELRVVAKGTF 534
Query: 553 DKLMDYAISLGASINQYKTPRCVK--FAPIIELLNSRVVSNYFS 594
K+ ++ + LG+S Q+K PRCVK A ++++L VVS+YFS
Sbjct: 535 RKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFS 578
>pdb|3J20|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 67
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 7 NSYPSDYSLD-EMNKKKLEFIENVTS 31
N YP++++ D E NKKK++ + NVTS
Sbjct: 18 NKYPNEFTTDFEHNKKKVQELTNVTS 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,081,059
Number of Sequences: 62578
Number of extensions: 799829
Number of successful extensions: 1725
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1700
Number of HSP's gapped (non-prelim): 7
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)