Query 006862
Match_columns 628
No_of_seqs 199 out of 877
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b2g_A GH3-1 auxin conjugating 100.0 3E-141 9E-146 1190.9 46.3 595 4-607 4-599 (609)
2 4eql_A 4-substituted benzoates 100.0 6E-138 2E-142 1161.9 41.3 565 13-594 8-580 (581)
3 4epl_A Jasmonic acid-amido syn 100.0 7E-137 2E-141 1151.3 48.1 563 15-597 12-581 (581)
4 3qov_A Phenylacetate-coenzyme 99.8 4.7E-20 1.6E-24 200.4 23.0 379 32-554 18-421 (436)
5 2y27_A Phenylacetate-coenzyme 99.8 2.1E-19 7.2E-24 195.3 23.7 315 32-468 22-355 (437)
6 2y4o_A Phenylacetate-coenzyme 99.8 5.4E-19 1.9E-23 192.4 25.4 313 33-467 25-356 (443)
7 3hgu_A EHPF; phenazine, antibi 99.5 4E-13 1.4E-17 142.5 18.6 85 36-127 22-118 (369)
8 3etc_A AMP-binding protein; ad 99.4 1.4E-11 4.7E-16 139.1 24.0 128 307-467 343-496 (580)
9 3e7w_A D-alanine--poly(phospho 99.4 2.2E-11 7.6E-16 134.7 24.4 133 299-467 257-419 (511)
10 2d1s_A Luciferase, luciferin 4 99.4 2.6E-11 8.8E-16 135.7 23.4 130 307-467 311-462 (548)
11 3fce_A D-alanine--poly(phospho 99.4 1.6E-11 5.5E-16 135.8 20.8 132 301-468 260-421 (512)
12 4fuq_A Malonyl COA synthetase; 99.4 2.9E-11 9.9E-16 133.8 22.2 129 307-467 270-420 (503)
13 3ni2_A 4-coumarate:COA ligase; 99.3 3.1E-11 1.1E-15 134.5 20.9 130 307-467 299-455 (536)
14 3l8c_A D-alanine--poly(phospho 99.3 4E-11 1.4E-15 132.8 20.6 129 307-467 266-424 (521)
15 3nyq_A Malonyl-COA ligase; A/B 99.3 7E-11 2.4E-15 130.9 22.0 131 307-467 274-427 (505)
16 1t5h_X 4-chlorobenzoyl COA lig 99.3 8.4E-11 2.9E-15 129.9 20.5 129 307-467 274-423 (504)
17 3rix_A Luciferase, luciferin 4 99.3 2.3E-11 8E-16 135.9 14.1 132 307-468 309-461 (550)
18 3ivr_A Putative long-chain-fat 99.3 2.9E-11 1E-15 133.6 13.8 130 307-468 274-422 (509)
19 3g7s_A Long-chain-fatty-acid-- 99.3 8.2E-11 2.8E-15 131.5 17.5 141 307-486 298-471 (549)
20 1amu_A GRSA, gramicidin synthe 99.2 1.7E-10 5.7E-15 129.7 19.8 129 307-467 295-451 (563)
21 2v7b_A Benzoate-coenzyme A lig 99.2 9.5E-11 3.3E-15 130.1 17.6 128 307-467 302-450 (529)
22 1mdb_A 2,3-dihydroxybenzoate-A 99.2 1.5E-10 5.3E-15 129.0 19.0 128 307-467 300-451 (539)
23 3r44_A Fatty acyl COA syntheta 99.2 1.2E-10 4.3E-15 129.1 17.9 61 402-467 358-434 (517)
24 1pg4_A Acetyl-COA synthetase; 99.2 6.8E-10 2.3E-14 127.0 24.3 162 401-589 455-646 (652)
25 3c5e_A Acyl-coenzyme A synthet 99.2 4.2E-10 1.5E-14 126.6 22.0 128 307-467 324-477 (570)
26 3kxw_A Saframycin MX1 syntheta 99.2 6.4E-11 2.2E-15 132.9 13.7 64 400-468 392-480 (590)
27 3rg2_A Enterobactin synthase c 99.2 4.6E-10 1.6E-14 127.4 20.5 129 307-467 304-455 (617)
28 3ite_A SIDN siderophore synthe 99.2 8.4E-11 2.9E-15 131.6 14.0 64 401-468 368-449 (562)
29 3o83_A Peptide arylation enzym 99.2 4E-11 1.4E-15 133.9 10.6 130 307-468 309-461 (544)
30 3tsy_A Fusion protein 4-coumar 99.2 1.5E-10 5E-15 138.4 14.4 131 307-468 346-503 (979)
31 3ipl_A 2-succinylbenzoate--COA 99.2 8.3E-10 2.8E-14 121.6 19.2 60 404-467 345-419 (501)
32 4gr5_A Non-ribosomal peptide s 99.1 1.2E-10 4.2E-15 130.8 11.8 130 307-468 328-491 (570)
33 1ry2_A Acetyl-coenzyme A synth 99.1 1.3E-09 4.4E-14 125.0 19.7 228 306-586 385-659 (663)
34 3gqw_A Fatty acid AMP ligase; 99.1 2.7E-09 9.2E-14 119.1 19.8 63 401-468 405-483 (576)
35 4dg8_A PA1221; ANL superfamily 99.1 1.3E-09 4.5E-14 124.1 17.2 62 402-467 355-440 (620)
36 4gs5_A Acyl-COA synthetase (AM 99.0 7.5E-10 2.6E-14 117.5 9.6 63 401-468 209-272 (358)
37 1v25_A Long-chain-fatty-acid-C 98.9 6.8E-09 2.3E-13 115.8 14.4 59 406-468 382-457 (541)
38 2vsq_A Surfactin synthetase su 98.9 1.7E-08 5.7E-13 124.2 18.2 63 401-467 797-882 (1304)
39 3t5a_A Long-chain-fatty-acid-- 97.9 2.6E-05 8.8E-10 84.7 10.4 27 100-127 184-210 (480)
40 3lax_A Phenylacetate-coenzyme 96.3 0.0091 3.1E-07 51.7 7.7 92 444-554 2-94 (109)
41 3gxs_A Phenylacetate-coenzyme 96.0 0.019 6.4E-07 49.9 7.8 94 443-554 1-94 (109)
42 3onr_A Protein transport prote 37.9 83 0.0028 25.2 6.4 49 454-503 15-64 (72)
43 2cc6_A VNG1446H, dodecin; flav 34.2 96 0.0033 24.6 6.1 49 454-503 13-62 (68)
44 2ux9_A Dodecin; flavoprotein; 24.6 96 0.0033 24.7 4.6 49 454-503 15-64 (69)
45 2vxa_A Dodecin; flavoprotein, 24.0 98 0.0034 24.8 4.6 49 454-503 16-65 (72)
46 2yiz_A Dodecin; flavoprotein, 23.8 1E+02 0.0035 24.5 4.6 49 454-503 15-64 (69)
47 2aze_A Transcription factor DP 22.6 73 0.0025 29.3 4.0 44 50-97 101-152 (155)
48 1lbj_A Motilin; A-helix, B-tur 20.7 63 0.0021 20.5 2.1 18 72-89 2-19 (26)
No 1
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=2.7e-141 Score=1190.90 Aligned_cols=595 Identities=66% Similarity=1.118 Sum_probs=537.0
Q ss_pred CCCCCCCCCCchhhhcHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCChHHHhhCCCCCCChhhHhhhCCCCChhhhHHH
Q 006862 4 APKNSYPSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQAD 83 (628)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~gf~~i~~~edF~~~vPl~tYedl~py 83 (628)
.|.-+-|-+....+++++.+++||+.|+||.++|+++|++||++|++|+|||+|||++|++++||+++|||++|||++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~ 83 (609)
T 4b2g_A 4 DPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPE 83 (609)
T ss_dssp ------------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHH
T ss_pred cccccCchhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHH
Confidence 34455566777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcccCCCcceeecccccCCCcccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEccCCccC
Q 006862 84 INRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKT 163 (628)
Q Consensus 84 IeRi~~Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~~~~~~~~~~t 163 (628)
|+||++||.++|||++||.+|++|||||||++|+||+|+++++.+.+++++++.++++++|+++.||.|+|++++.+.+|
T Consensus 84 ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t 163 (609)
T 4b2g_A 84 IQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRT 163 (609)
T ss_dssp HHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEEC
T ss_pred HHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccC
Confidence 99999999889999999999999999999999999999999999888899999999999999889999999888888999
Q ss_pred CCCceeeeccccccccccccCCCCCCCcccCCCcccccCCChhhHHHHHHhhhcccCccccEEeecchHHHHHHHHHHhh
Q 006862 164 PGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEK 243 (628)
Q Consensus 164 ~~Gi~~g~~s~~~~~s~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~fa~~ll~~~~~Le~ 243 (628)
++|+++|++|+.+++|.+|+++|.+|+..|++|.+++.++|..|+|||||||||.++++|++|+++|++++++++++|++
T Consensus 164 ~~Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~ 243 (609)
T 4b2g_A 164 PGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQL 243 (609)
T ss_dssp TTSCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCCCChhhHHHHhhhcCCCHHHHHHHHHHhhhcCccccccccCCCCceeEEEEcCCccchHHHHH
Q 006862 244 HWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILD 323 (628)
Q Consensus 244 ~w~~l~~dI~~Gtl~~~i~~~~~r~~l~~~l~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~ 323 (628)
+|++||+||++|+++++|+++++|+++.++|+|+|++|++|+++|.+.+|.|++.+|||||++|+||++|+|++|+++|+
T Consensus 244 ~Weel~~dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~ 323 (609)
T 4b2g_A 244 NWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLD 323 (609)
T ss_dssp HHHHHHHHHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHH
T ss_pred HHHHHHHHHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred hhcCCCceeccccccccccccccCCCCCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCCccccccccceeeeccccC
Q 006862 324 YYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVK 403 (628)
Q Consensus 324 ~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve 403 (628)
+++|++|+++.+|+||||+||+|++|.|+|+..+|+|+|+++||||||+++.+.. ..+.+++++|+++|||
T Consensus 324 ~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~---------~~~~~~~~~v~l~eVe 394 (609)
T 4b2g_A 324 YYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP---------LSRDSPPRLVDLAHVE 394 (609)
T ss_dssp HHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC---------CCSSSCCCCEEGGGCC
T ss_pred HHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc---------cccCCCCccccHhHcC
Confidence 9999999999999999999999999999988899999999999999999864100 0012458899999999
Q ss_pred CCceEEEEEeeccceEeeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEeEE
Q 006862 404 LGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYT 483 (628)
Q Consensus 404 ~G~~YeLVvTt~~GLyRYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~eft 483 (628)
+|++|||||||++||||||+||+|+|+|||+++|+|+|+||.+++||++|||++|++|++||.+|++.|+++|+.|.|||
T Consensus 395 ~G~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft 474 (609)
T 4b2g_A 395 VGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYT 474 (609)
T ss_dssp TTCEEEEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEE
T ss_pred CCCeEEEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred EeecCCCCCceEEEEEEEeeC-CCCCCCcchHHHHHHHHHHHhChhhHhcccCCCccCCeEEEEcCCccHHHHHHHHHhc
Q 006862 484 SYADTTTVPGHYVLYWELSLN-GTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISL 562 (628)
Q Consensus 484 ~~~d~~~~p~~Yvl~~El~~~-~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~~~l~pl~v~~V~~GtF~~l~~~~~~~ 562 (628)
+++|.++.||||++|||+++. +...++++++++||..||++||++|+.+|.++++|+||+|++|++|+|++||++++++
T Consensus 475 ~~~d~~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~ 554 (609)
T 4b2g_A 475 SFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISR 554 (609)
T ss_dssp EEEECSSSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC--------
T ss_pred EecCCCCCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhC
Confidence 999988899999999999752 1233466899999999999999999999977789999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCHhHHHHHhhccccccccCCCCCCCcccccc
Q 006862 563 GASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVAGHKQW 607 (628)
Q Consensus 563 G~~~~Q~K~Pr~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~~ 607 (628)
|+++||||+|||+++++++++|+++||++|||+++|+|.|.++++
T Consensus 555 G~~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~~ 599 (609)
T 4b2g_A 555 GASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRRA 599 (609)
T ss_dssp --------CCSSCC--CCHHHHHTTEEEEEECCSCCCCCSCCC--
T ss_pred CCCCCCcCCCcccCCHHHHHHHHhcccccccCCCCCCCCcccchh
Confidence 999999999999999999999999999999999999999987765
No 2
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=6.4e-138 Score=1161.94 Aligned_cols=565 Identities=48% Similarity=0.875 Sum_probs=477.0
Q ss_pred CchhhhcHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCChHHHhhCCCCCCChhhHhhhCCCCChhhhHHHHHHHHcCCC
Q 006862 13 YSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQADINRIANGDT 92 (628)
Q Consensus 13 ~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~gf~~i~~~edF~~~vPl~tYedl~pyIeRi~~Ge~ 92 (628)
.+..+++++.+++||+.++||.++|+++|++||++|++|+|||+| |++|++++|||++|||++|||++|||+||++||.
T Consensus 8 ~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~-f~~i~~~~~F~~~VPi~~Yedl~pyIeRi~~Ge~ 86 (581)
T 4eql_A 8 KPIFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRF-LIDRFDKELFKKNVPIVSYEDIKPYLDRVVNGES 86 (581)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHT-TCCSCCHHHHHHHSCCBCHHHHHHHHHHHHTTCC
T ss_pred ccccCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHH-hhcCCCHHHHHHhCCCccHHHHHHHHHHHHcCCC
Confidence 345678889999999999999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred CCcccCCCcceeecccccCCCcccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEccCCccCCCCceeeec
Q 006862 93 SPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPV 172 (628)
Q Consensus 93 ~~lL~~~pi~~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~~~~~~~~~~t~~Gi~~g~~ 172 (628)
++|||++||.+|++|||||||++|+||+|+++++.+.+++++++.++++++|+++.||.|+|++.+.+.+|++|+|+|++
T Consensus 87 ~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~g~~ 166 (581)
T 4eql_A 87 SDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVA 166 (581)
T ss_dssp GGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEEECH
T ss_pred CcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeeeccc
Confidence 89999999999999999999999999999999999888899999999999999889999999888888999999999999
Q ss_pred cccccccccccCCCCCCCcccCCCcccccCCChhhHHHHHHhhhcccCccccEEeecchHHHHHHHHHHhhhHHHHHHHH
Q 006862 173 LTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDI 252 (628)
Q Consensus 173 s~~~~~s~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~fa~~ll~~~~~Le~~w~~l~~dI 252 (628)
|+.+++|.+|+++|.+|+..|++|.+++.++|..|+|||||||||.++++|++|+++|++++++++++|+++|++||+||
T Consensus 167 s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~~dI 246 (581)
T 4eql_A 167 TSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNI 246 (581)
T ss_dssp HHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCChhhHHHHhhhcC-CCHHHHHHHHHHhhhcCccccccccCCCCceeEEEEcCCccchHHHHHhhcCCCce
Q 006862 253 RTGTIDSQITDPSVRDAVMKILK-PNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPL 331 (628)
Q Consensus 253 ~~Gtl~~~i~~~~~r~~l~~~l~-p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~~g~p~ 331 (628)
++|+++++|+++++|++|..+|+ |||++|++|+++|.+.+|.|++++|||||++|+||+||+|++|+++|++|+|++|+
T Consensus 247 ~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g~~p~ 326 (581)
T 4eql_A 247 RSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPL 326 (581)
T ss_dssp HHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTTCCE
T ss_pred HhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCcc
Confidence 99999999999999999999998 99999999999999988999999999999999999999999999999999999999
Q ss_pred eccccccccccccccCCCCCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCCccccccccceeeeccccCCCceEEEE
Q 006862 332 VCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELV 411 (628)
Q Consensus 332 ~~~~Y~aSEg~~gi~~~~~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLV 411 (628)
++++|+||||+||+|++|.|+|+.++|+|+|+++||||||+++.+ ++++++++|||+|++||||
T Consensus 327 ~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~----------------~~~~v~l~eVe~G~~YelV 390 (581)
T 4eql_A 327 VSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGD----------------KNDVVDLEDVKLGCTYEPV 390 (581)
T ss_dssp ECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTC----------------CSSCEEGGGCCTTCEEEEE
T ss_pred ccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEeccccC----------------CCcEeCHHHcCCCceEEEE
Confidence 999999999999999999999888899999999999999987532 3679999999999999999
Q ss_pred EeeccceEeeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEeEEEeecCCCC
Q 006862 412 VTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTV 491 (628)
Q Consensus 412 vTt~~GLyRYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~ 491 (628)
|||.+||||||+||+|+|+|||+++|+|+|+||.+++||++|||++|++|++||.+|++.|+++|+.|.|||+++|.++.
T Consensus 391 iTt~~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~ 470 (581)
T 4eql_A 391 VTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTF 470 (581)
T ss_dssp EECSSSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEEEECSSS
T ss_pred EeeccceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998787899999999999998889
Q ss_pred CceEEEEEEEeeCC-------CCCCCcchHHHHHHHHHHHhChhhHhcccCCCccCCeEEEEcCCccHHHHHHHHHhcCC
Q 006862 492 PGHYVLYWELSLNG-------TTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISLGA 564 (628)
Q Consensus 492 p~~Yvl~~El~~~~-------~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~~~l~pl~v~~V~~GtF~~l~~~~~~~G~ 564 (628)
||||+||||+++.+ ..+++++++++||..||++||++|+.+|.++++|+||+|++|++|+|++||++++++|+
T Consensus 471 p~Hy~~~wel~~~~~~~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~ 550 (581)
T 4eql_A 471 PGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGA 550 (581)
T ss_dssp SBEEEEECC---------------CCHHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC------------------
T ss_pred CCeEEEEEEEecccccccccccCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCC
Confidence 99999999997511 22345579999999999999999999997778999999999999999999999999999
Q ss_pred CCCCCCCCcccCCHhHHHHHhhcccccccc
Q 006862 565 SINQYKTPRCVKFAPIIELLNSRVVSNYFS 594 (628)
Q Consensus 565 ~~~Q~K~Pr~~~~~~~~~~L~~~v~~~~~s 594 (628)
++||||+|||+++++++++|+++||++|||
T Consensus 551 ~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 551 STGQYKTPRCIKSGKALQVLETCVVAKFFS 580 (581)
T ss_dssp --------------------------CEEC
T ss_pred CCCCcCCCcccCCHHHHHHHHhcchheeec
Confidence 999999999999999999999999999998
No 3
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=6.5e-137 Score=1151.29 Aligned_cols=563 Identities=40% Similarity=0.707 Sum_probs=523.9
Q ss_pred hhhhcHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCChHHHhhCCCCC-CChh-hHhhhCCCCChhhhHHHHHHHHcCCC
Q 006862 15 LDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGH-TDRE-SFKKTMPVITYEDIQADINRIANGDT 92 (628)
Q Consensus 15 ~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~gf~~i-~~~e-dF~~~vPl~tYedl~pyIeRi~~Ge~ 92 (628)
..+++++.+++||+.++||.++|+++|++||++|++|+|||+|||++| +|++ |||++|||++|||++|||+||++||.
T Consensus 12 ~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi~~Ge~ 91 (581)
T 4epl_A 12 ETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRMVDGDT 91 (581)
T ss_dssp -CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHHHCCCC
Confidence 356777889999999999999999999999999999999999999999 9999 99999999999999999999999998
Q ss_pred CCcccCCCcceeecccccCCCcccccccCHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCeEEEEEccCCccCCCCceeee
Q 006862 93 SPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLD-KGKGMYFLFIKSEAKTPGGLVARP 171 (628)
Q Consensus 93 ~~lL~~~pi~~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~-~Gk~l~~~~~~~~~~t~~Gi~~g~ 171 (628)
++|||++||.+|++|||||+|++|+||+|+++++.+.+++.+++.++++ +|+++ .||.|+|++++.+.+|++|+++|+
T Consensus 92 ~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~~Gi~~G~ 170 (581)
T 4epl_A 92 SPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYISTGGVPVGT 170 (581)
T ss_dssp SSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECTTSCEEEC
T ss_pred CCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCCCCceeee
Confidence 8999999999999999999999999999999999988888888888876 78888 899999988999999999999999
Q ss_pred ccccccccccccCCCCCCCcccCCCcccccCCChhhHHHHHHhhhcccCccccEEeecchHHHHHHHHHHhhhHHHHHHH
Q 006862 172 VLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKD 251 (628)
Q Consensus 172 ~s~~~~~s~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~fa~~ll~~~~~Le~~w~~l~~d 251 (628)
+|+.+++|.+|+++|..+...|++|.+++.++|+.|+|||||||||.++++|.+|+++||++|++++++|+++|++||+|
T Consensus 171 ~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~l~~d 250 (581)
T 4epl_A 171 ATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTD 250 (581)
T ss_dssp HHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCChhhHHHHhhhcCCCHHHHHHHHHHhhhc-CccccccccCCCCceeEEEEcCCccchHHHHHhhcCCCc
Q 006862 252 IRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKD-CWQGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLP 330 (628)
Q Consensus 252 I~~Gtl~~~i~~~~~r~~l~~~l~p~p~~A~~L~~~~~~~-~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~~g~p 330 (628)
|++|+++++++++++|+++.++++|+|++|++|+++|.+. +|.|++++|||||++|+||+||+|++|+++|++|+|++|
T Consensus 251 I~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~p 330 (581)
T 4epl_A 251 IKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDLP 330 (581)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHHTTSC
T ss_pred HHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred eeccccccccccccccCCCCCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCCccccccccceeeeccccCCCceEEE
Q 006862 331 LVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYEL 410 (628)
Q Consensus 331 ~~~~~Y~aSEg~~gi~~~~~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeL 410 (628)
+++.+|+||||+||+|++|.|+|++++|+|+|+++||||||+++.+. +++++|+++|||+|++|||
T Consensus 331 ~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~--------------~~~~~v~l~eve~G~~Yel 396 (581)
T 4epl_A 331 LVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGE--------------GEEKPVGLTQVKIGEEYEV 396 (581)
T ss_dssp EEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC---------------------CCCEEGGGCCTTCEEEE
T ss_pred cccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecccccC--------------CCCceeeHHHcCCCCeEEE
Confidence 99999999999999999999998889999999999999999886432 3478999999999999999
Q ss_pred EEeeccceEeeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEeEEEeecCCC
Q 006862 411 VVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTT 490 (628)
Q Consensus 411 VvTt~~GLyRYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~ 490 (628)
||||.+||||||+||+|+|+||||++|+|+|+||++++||++|||++|++|++||.+|+++|+++|+.|.|||+++|.++
T Consensus 397 viTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~ 476 (581)
T 4epl_A 397 VITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVST 476 (581)
T ss_dssp EEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSS
T ss_pred EEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888789999999999999888
Q ss_pred CCceEEEEEEEeeCCCCCCCcchHHHHHHHHHHHh-ChhhHhcccCCCccCCeEEEEcCCccHHHHHHHHHhcCCCCCCC
Q 006862 491 VPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESL-NSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQY 569 (628)
Q Consensus 491 ~p~~Yvl~~El~~~~~~~~~~~~l~~~~~~ld~~L-n~~Y~~~R~~~~~l~pl~v~~V~~GtF~~l~~~~~~~G~~~~Q~ 569 (628)
.||||+||||++. . ++.+.+++||..||++| |++|+.+| .+++|+||+|++|++|+|++|+++++++|+++|||
T Consensus 477 ~p~hyv~~wE~~~---~-~~~~~l~~~~~~Ld~~L~n~~Y~~~R-~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~ 551 (581)
T 4epl_A 477 DPGHYAIFWEISG---E-TNEDVLQDCCNCLDRAFIDAGYVSSR-KCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQF 551 (581)
T ss_dssp SSCEEEEEEEESS---C-CCHHHHHHHHHHHHHHCCCHHHHHHH-HHTSSCCCEEEEECTTHHHHHHHHHHTTC------
T ss_pred CCCcEEEEEeecC---C-CCHHHHHHHHHHHHHHhCChhHHHHH-hcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCc
Confidence 8999999999852 2 45578999999999999 99999999 56799999999999999999999999999999999
Q ss_pred CCCccc--CCHhHHHHHhhccccccccCCC
Q 006862 570 KTPRCV--KFAPIIELLNSRVVSNYFSPKC 597 (628)
Q Consensus 570 K~Pr~~--~~~~~~~~L~~~v~~~~~s~~~ 597 (628)
|+|||+ ++++++++|+++||++|||+++
T Consensus 552 K~PR~~~~~~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 552 KMPRCVKPSNAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp CCCSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred CCCeeecCCCHHHHHHHHhcccccccCCCC
Confidence 999999 9999999999999999999874
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.85 E-value=4.7e-20 Score=200.36 Aligned_cols=379 Identities=17% Similarity=0.191 Sum_probs=217.2
Q ss_pred CHHHHHHHHHHHHHHhcCCChHHHhh----CCC--CCCChhhHhhhCCCCChhhhHHHHHHHHcCCCCCcccC---CCcc
Q 006862 32 NPDEVQKKVLSEILLRNAHVEYLQRN----GLN--GHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCS---KPIS 102 (628)
Q Consensus 32 ~~~~~Q~~~L~~iL~~n~~T~ygr~~----gf~--~i~~~edF~~~vPl~tYedl~pyIeRi~~Ge~~~lL~~---~pi~ 102 (628)
..++.|.+.|+++++...+++|+|++ |+. .+.+.+||. ++|++++++++.... . .+++. +.+.
T Consensus 18 ~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~dl~-~lP~~~~~~l~~~~p------~-~~~~~~~~~~~a 89 (436)
T 3qov_A 18 KLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDDIR-KIPFTTKSDMRANYP------F-GLVAGDMKRDGV 89 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGGGG-GSCCBCHHHHHHTTT------T-TTCCSCHHHHEE
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC------C-ccccCCCcCCeE
Confidence 45789999999999866999999975 665 688899995 899999999986331 1 12221 2344
Q ss_pred eeecccccCCCcccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEccCCccCCCCceeeeccccccccccc
Q 006862 103 EFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHF 182 (628)
Q Consensus 103 ~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~~~~~~~~~~t~~Gi~~g~~s~~~~~s~~~ 182 (628)
+...||||| |+||-++.|...+........ ..+. ..++..+..+... .+ -+.-.+
T Consensus 90 ~i~~TSGTT-G~PK~v~~th~~~~~~~~~~~---~~~~--~~~~~~~d~~~~~--~~-----~~~~~~------------ 144 (436)
T 3qov_A 90 RIHSSSGTT-GNPTVIVHSQHDLDSWANLVA---RCLY--MVGIRKTDVFQNS--SG-----YGMFTG------------ 144 (436)
T ss_dssp EEEECSCSS-SCCCEEEEEHHHHHHHHHHHH---HHHH--HTTCCTTSEEEEC--SC-----CTTCHH------------
T ss_pred EEEECCCcC-CCCeEEEECHHHHHHHHHHHH---HHHH--HcCCCCCCEEEEC--cc-----cccchh------------
Confidence 778899999 899999999987654322111 1111 1123334332211 00 000000
Q ss_pred cCCCCCCCcccCCCcccccCCChhhHHHHHHhhhcccCccccEEeecchHHHHHHHHHHhhhHHHHHHHHHhccCCCCCC
Q 006862 183 KERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQIT 262 (628)
Q Consensus 183 ~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~fa~~ll~~~~~Le~~w~~l~~dI~~Gtl~~~i~ 262 (628)
.....+..+..|.. +.. ...+ +-+.+++.|++..+.--..
T Consensus 145 ----------------------~~~~~~~~l~~G~~----~~~-~~~~-------------~~~~~~~~i~~~~~t~~~~ 184 (436)
T 3qov_A 145 ----------------------GLGFQYGAERLGCL----TVP-AAAG-------------NSKRQIKFISDFKTTALHA 184 (436)
T ss_dssp ----------------------HHHHHHHHHHHTCE----EEC-CCSC-------------CHHHHHHHHHHHTCCEEEC
T ss_pred ----------------------HHHHHHHHHHcCCE----EEe-CCCC-------------CHHHHHHHHHHHCCCEEEE
Confidence 00011222222210 000 0001 1234455555444222112
Q ss_pred ChhhHHHHhhhcCCCHHHHHHHHHHhhhcCccccccccCCCCceeEEEEcCCc---cchHHHHHhhcCCCceeccccccc
Q 006862 263 DPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASS 339 (628)
Q Consensus 263 ~~~~r~~l~~~l~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aS 339 (628)
-|..+..|.+...+. +. ..-.++ ++.+++||. ...++.+++.+ |++++ +.||+|
T Consensus 185 --------------~P~~~~~l~~~~~~~---~~-~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~T 241 (436)
T 3qov_A 185 --------------IPSYAIRLAEVFQEE---GI-DPRETT---LKTLVIGAEPHTDEQRRKIERML-NVKAY-NSFGMT 241 (436)
T ss_dssp --------------CHHHHHHHHHHHHHT---TC-CTTSSS---CCEEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEEG
T ss_pred --------------CHHHHHHHHHHHHHc---CC-CcccCC---ccEEEEeCCcCCHHHHHHHHHHh-CccEE-ecCcch
Confidence 334444444443332 11 111344 566666663 34567777778 89998 999999
Q ss_pred cc-cccccCCCCCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCCccccccccceeeeccccCCCceEEEEEeec---
Q 006862 340 EC-YFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTY--- 415 (628)
Q Consensus 340 Eg-~~gi~~~~~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt~--- 415 (628)
|+ ..++.. .|+ ...++++......+|.++++... .|..|+.+||+||+.
T Consensus 242 E~~~~~~~~--~~~-~~~g~~~~~~~~~v~i~d~~~g~------------------------~~~~g~~Gel~v~~~~~~ 294 (436)
T 3qov_A 242 EMNGPGVAF--ECQ-EQNGMHFWEDCYLVEIIDPETGE------------------------PVPEGEIGELVLTTLDRE 294 (436)
T ss_dssp GGTEEEEEE--ECT-TCSSEEECTTTEEEEEECTTTCS------------------------BCSTTCCEEEEEEESSCC
T ss_pred hhcCCeeEE--ecC-CCCeeEEccCceEEEEEECCCCC------------------------CCCCCCceEEEEeccCcC
Confidence 98 332322 222 34567766566778888754321 367899999999963
Q ss_pred -cceEeeeeCCEEEEecccCC------CCEE-EEeeecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEe-EEEee
Q 006862 416 -AGLYRYRVGDVLRVAGFKNK------APQF-NFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSE-YTSYA 486 (628)
Q Consensus 416 -~GLyRYr~GDvv~v~gf~~~------~P~~-~f~gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~e-ft~~~ 486 (628)
..+.||+|||++++.. ++ .|++ .|+||.++++++.|+++...+|++++.+. .+ |.+ +.+..
T Consensus 295 ~~~~~~y~TGDl~~~~~--~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~--v~~~~vv~~ 364 (436)
T 3qov_A 295 MMPLIRYRTRDLTRILP--GKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PE--LGSNYLITL 364 (436)
T ss_dssp SSCCCSEEEEEEECEEC--SCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TT--EEEEEEEEE
T ss_pred CceEEEEEcCCEEEEcC--CCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cC--cCCcEEEEE
Confidence 2366899999999985 33 4556 99999999999999999999999999652 23 222 22222
Q ss_pred cCCCCCceEEEEEEEeeCCCCCCCcchHHHHHHHHHHHhChhhHhcccCCCccCCeEEEEcCCccHHH
Q 006862 487 DTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDK 554 (628)
Q Consensus 487 d~~~~p~~Yvl~~El~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~~~l~pl~v~~V~~GtF~~ 554 (628)
.........++++++. . ....+....+++.+.|.+.|.. | .--|..|.+|..+.|.+
T Consensus 365 ~~~~~~~~l~a~v~~~-~-~~~~~~~~~~~l~~~l~~~l~~-~--------~~~p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 365 ETVNNQDEMIVEVELS-D-LSTDNYIELEKIRRDIIRQLKD-E--------ILVTPKVKLVKKGSLPQ 421 (436)
T ss_dssp EEETTEEEEEEEEEEC-T-TCCCCHHHHHHHHHHHHHHHHH-H--------HSSCCEEEEECTTCCC-
T ss_pred EcCCCCcEEEEEEEEc-C-ccccchhhHHHHHHHHHHHHHH-h--------cCCceEEEEeCCCcccC
Confidence 2111223455777765 2 1111111234444455554433 1 02345799999887774
No 5
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.83 E-value=2.1e-19 Score=195.30 Aligned_cols=315 Identities=17% Similarity=0.195 Sum_probs=187.1
Q ss_pred CHHHHHHHHHHHHHHh-cCCChHHHhh----CCC--CCCChhhHhhhCCCCChhhhHHHHHHHHcCCCCCcccCCCccee
Q 006862 32 NPDEVQKKVLSEILLR-NAHVEYLQRN----GLN--GHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEF 104 (628)
Q Consensus 32 ~~~~~Q~~~L~~iL~~-n~~T~ygr~~----gf~--~i~~~edF~~~vPl~tYedl~pyIeRi~~Ge~~~lL~~~pi~~f 104 (628)
+.++.|.+.|+++|+. .++++|++++ |+. .+.+.+||. ++|+++|++++.... .+- .-...+.+.++
T Consensus 22 ~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~~---~~~--~~~~~~~~~~i 95 (437)
T 2y27_A 22 ELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLRDSYP---FGM--FAVPQDRISRI 95 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHHHTTT---TTT--CSSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHHhcCC---Ccc--ccCChhHeEEE
Confidence 3568899999999996 5789999986 443 578899995 899999999975321 010 11233445578
Q ss_pred ecccccCCCcccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEccCCccCCCCceeeeccccccccccccC
Q 006862 105 LTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKE 184 (628)
Q Consensus 105 ~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~~~~~~~~~~t~~Gi~~g~~s~~~~~s~~~~~ 184 (628)
..||||| |+||-+++|...+.......... +. . -++..+..+... .+ -+.- ..
T Consensus 96 ~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~---~~-~-~~~~~~d~~~~~-~~------~~~~----~~---------- 148 (437)
T 2y27_A 96 HASSGTT-GKPTVVGYTAADIDTWANLVARS---IR-A-AGARRGDKVHVS-YG------YGLF----TG---------- 148 (437)
T ss_dssp EECCCTT-SSCCEEEECHHHHHHHHHHHHHH---HH-H-TTCCTTCEEEEC-SC------CSSS----HH----------
T ss_pred EECCCCC-CCceEEecCHHHHHHHHHHHHHH---HH-H-cCCCCCCEEEEc-cc------cccc----cc----------
Confidence 8899999 89999999998765432221111 10 1 123334332211 00 0000 00
Q ss_pred CCCCCCcccCCCcccccCCChhhHHHHHHhhhcccCccccEEeecchHHHHHHHHHHhhhHHHHHHHHHhccCCCCCCCh
Q 006862 185 RPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQITDP 264 (628)
Q Consensus 185 ~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~fa~~ll~~~~~Le~~w~~l~~dI~~Gtl~~~i~~~ 264 (628)
.....+..+++|.. +.. ... .+.+.+++.|++..+.--.
T Consensus 149 --------------------~~~~~~~~~~~G~~----~~~-~~~-------------~~~~~~~~~i~~~~~t~l~--- 187 (437)
T 2y27_A 149 --------------------GLGAHYGAERAGLT----VIP-FGG-------------GQTEKQVQLIQDFRPDIIM--- 187 (437)
T ss_dssp --------------------HHHHHHHHHHTTCE----EEC-CCS-------------CCHHHHHHHHHHHCCSEEE---
T ss_pred --------------------chHHHHHHHHcCCE----EEe-CCC-------------CCHHHHHHHHHHhCCCEEE---
Confidence 00001112222210 000 000 1234455566654422211
Q ss_pred hhHHHHhhhcCCCHHHHHHHHHHhhhcCccccccccCCCCceeEEEEcCCc---cchHHHHHhhcCCCceeccccccccc
Q 006862 265 SVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSEC 341 (628)
Q Consensus 265 ~~r~~l~~~l~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg 341 (628)
..|..+..|.+...+. +. ..-+++ ++.+++|+. ...++.+++.+ |++++ +.||+||+
T Consensus 188 -----------~~Ps~~~~l~~~~~~~---~~-~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~ 247 (437)
T 2y27_A 188 -----------VTPSYMLSIADEIERQ---GL-DPVQSS---LRIGIFGAEPWTNDMRVAIEQRM-GIDAV-DIYGLSEV 247 (437)
T ss_dssp -----------ECHHHHHHHHHHHHHT---TC-CGGGSS---CCEEEEESSCCCHHHHHHHHHHH-TSEEE-EEEEETTT
T ss_pred -----------ECHHHHHHHHHHHHHc---CC-CcccCC---eeEEEEcCccCCHHHHHHHHHHH-CcCEE-ecCCchhh
Confidence 1333444443333322 11 111455 455555553 44567777777 79988 99999995
Q ss_pred -c--ccccCCCCCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCCccccccccceeeeccccCCCceEEEEEeeccc-
Q 006862 342 -Y--FGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAG- 417 (628)
Q Consensus 342 -~--~gi~~~~~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt~~G- 417 (628)
. ++++ |+....++++.....++|+++++... .|..|+.+||+||+...
T Consensus 248 ~g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~~g~------------------------~~~~g~~Gel~v~~~t~~ 299 (437)
T 2y27_A 248 MGPGVASE----CVETKDGPTIWEDHFYPEIIDPETGE------------------------VLPDGELGELVFTSLTKE 299 (437)
T ss_dssp TEEEEEEC----CTTTCSSCEECTTTEEEEEECTTTCC------------------------BCCTTCCEEEEEEESSCS
T ss_pred cCCeeEEe----cCCCCCceeEccCceEEEEEcCCCCC------------------------CCCCCCccEEEEecCCcC
Confidence 2 3332 22222257665566788988765321 35679999999997433
Q ss_pred ---eEeeeeCCEEEEecc-cCCCCEE-EEeeecCceEeccceeccHHHHHHHHHHH
Q 006862 418 ---LYRYRVGDVLRVAGF-KNKAPQF-NFICRKNVVLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 418 ---LyRYr~GDvv~v~gf-~~~~P~~-~f~gR~~~~l~i~gek~~e~~v~~av~~a 468 (628)
+.||||||++++... -...|++ .|+||.+|++++.|+++++.+|++++.+.
T Consensus 300 ~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~ 355 (437)
T 2y27_A 300 ALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ 355 (437)
T ss_dssp SSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTC
T ss_pred CchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhC
Confidence 679999999999852 2246778 89999999999999999999999999653
No 6
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.83 E-value=5.4e-19 Score=192.38 Aligned_cols=313 Identities=15% Similarity=0.152 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHh-cCCChHHHhh----CCC--CCCChhhHhhhCCCCChhhhHHHHHHHHcCCCCCcccCCCcceee
Q 006862 33 PDEVQKKVLSEILLR-NAHVEYLQRN----GLN--GHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFL 105 (628)
Q Consensus 33 ~~~~Q~~~L~~iL~~-n~~T~ygr~~----gf~--~i~~~edF~~~vPl~tYedl~pyIeRi~~Ge~~~lL~~~pi~~f~ 105 (628)
.++.|.+.|+++|+. .++++|++++ |+. .+.+++||+ ++|+++|++++.... .+- .-...+.+.+..
T Consensus 25 ~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~~~~p---~~~--~~~~~~~~~~i~ 98 (443)
T 2y4o_A 25 LQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLADLA-KFPFSTKNDLRDNYP---FGL--FAVPREQVVRVH 98 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGGGG-GSCCBCHHHHHTTTT---TTT--CSSCGGGCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCcHHHHHhhCC---Ccc--cCCChhheEEEE
Confidence 568899999999996 5789999986 543 588999995 899999999974321 010 112334455788
Q ss_pred cccccCCCcccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEccCCccCCCCceeeeccccccccccccCC
Q 006862 106 TSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKER 185 (628)
Q Consensus 106 ~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~~~~~~~~~~t~~Gi~~g~~s~~~~~s~~~~~~ 185 (628)
.||||| |+||.+++|...+.......... + .. -++..+..+... .+ -+.- ..
T Consensus 99 ~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~---~-~~-~~~~~~d~~l~~-~~------~~~~----~~----------- 150 (443)
T 2y4o_A 99 ASSGTT-GKPTVVGYTARDIDTWANVTARS---I-RA-AGGRPGDTLHNA-FG------YGLF----TG----------- 150 (443)
T ss_dssp EECCSS-SSCEEEEECHHHHHHHHHHHHHH---H-HH-TTCCTTCEEEEC-SC------CSSS----HH-----------
T ss_pred ECCCCC-CCceEEecCHHHHHHHHHHHHHH---H-HH-cCCCCCCEEEEe-cc------Cccc----cc-----------
Confidence 899999 89999999998765432221111 1 01 123334332211 00 0000 00
Q ss_pred CCCCCcccCCCcccccCCChhhHHHHHHhhhcccCccccEEeecchHHHHHHHHHHhhhHHHHHHHHHhccCCCCCCChh
Q 006862 186 PYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQITDPS 265 (628)
Q Consensus 186 ~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~fa~~ll~~~~~Le~~w~~l~~dI~~Gtl~~~i~~~~ 265 (628)
.....+..+++|.. +..+ ..+ +-+++++.|++..+.--.
T Consensus 151 -------------------~~~~~~~~~~~G~~----~~~~-~~~-------------~~~~~~~~i~~~~~t~l~---- 189 (443)
T 2y4o_A 151 -------------------GLGIHYGAERLGCM----VVPM-SGG-------------QTEKQVQLIRDFEPKIIL---- 189 (443)
T ss_dssp -------------------HHHHHHHHHHHTCE----EECC-CSC-------------CHHHHHHHHHHHCCSEEE----
T ss_pred -------------------HHHHHHHHHHcCCE----EEEC-CCC-------------CHHHHHHHHHHhCCcEEE----
Confidence 00011122222211 0000 001 234445555544322111
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHhhhcCccccccccCCCCceeEEEEcCCc---cchHHHHHhhcCCCceeccccccccc-
Q 006862 266 VRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSEC- 341 (628)
Q Consensus 266 ~r~~l~~~l~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg- 341 (628)
..|..+..|.+...+. +. ..-+++ ++.+++||. ...++.+++.+ |++++ +.||+||+
T Consensus 190 ----------~~Ps~~~~l~~~~~~~---~~-~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~ 250 (443)
T 2y4o_A 190 ----------VTPSYMLNLIDEMVRQ---GM-DPAESS---LKIGIFGAEPWTQALRNEVETRV-GIDAL-DIYGLSEVM 250 (443)
T ss_dssp ----------ECHHHHHHHHHHHHHT---TC-CGGGSS---CCEEEEESSCCCHHHHHHHHHHH-TCEEE-EEEEETTTT
T ss_pred ----------ECHHHHHHHHHHHHHc---CC-CcccCC---ceEEEECCCcCCHHHHHHHHHHh-CcCEE-eccCchhhc
Confidence 1333444443333322 11 111355 455555553 44567777777 79988 99999995
Q ss_pred c--ccccCCCCCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCCccccccccceeeeccccCCCceEEEEEeecc---
Q 006862 342 Y--FGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYA--- 416 (628)
Q Consensus 342 ~--~gi~~~~~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt~~--- 416 (628)
. ++.. |+....++++.....++|+++++... .|..|+.|||+||+..
T Consensus 251 g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~~g~------------------------~~~~G~~Gel~v~~~t~~~ 302 (443)
T 2y4o_A 251 GPGVACE----CVETKDGPVIWEDHFYPEIIDPVTGE------------------------VLPDGSQGELVFTSLTKEA 302 (443)
T ss_dssp EEEEEEE----CTTTCCSEEECTTTEEEEEECTTTCC------------------------BCCTTCCEEEEEEESSCSS
T ss_pred CCeEEec----cCCCCCceEEccCCeEEEEEcCCCCC------------------------CCCCCCceEEEEeCCCccc
Confidence 3 3332 22122257765566788888754321 3568999999999743
Q ss_pred -ceEeeeeCCEEEEecc-cCCCCEE-EEeeecCceEeccceeccHHHHHHHHHH
Q 006862 417 -GLYRYRVGDVLRVAGF-KNKAPQF-NFICRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 417 -GLyRYr~GDvv~v~gf-~~~~P~~-~f~gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
.+.||||||++++..- ....|+| .|+||.+|++++.|+++++.+|++++.+
T Consensus 303 ~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~ 356 (443)
T 2y4o_A 303 MPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVA 356 (443)
T ss_dssp SCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHT
T ss_pred ChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHh
Confidence 2568999999999851 1124667 8999999999999999999999999965
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.50 E-value=4e-13 Score=142.46 Aligned_cols=85 Identities=9% Similarity=0.160 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHh-cC---CChHHHhh----CCC---CCCChhhHhhhCCCCChhhhHH-HHHHHHcCCCCCcccCCCcce
Q 006862 36 VQKKVLSEILLR-NA---HVEYLQRN----GLN---GHTDRESFKKTMPVITYEDIQA-DINRIANGDTSPILCSKPISE 103 (628)
Q Consensus 36 ~Q~~~L~~iL~~-n~---~T~ygr~~----gf~---~i~~~edF~~~vPl~tYedl~p-yIeRi~~Ge~~~lL~~~pi~~ 103 (628)
.+++.|+++++. .. +++|+|++ |+. .+++.+|+ .++|+++ ++++. +.+.+..- . +..+.+.+
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~dl-~~lP~~~-~~l~~~~~~~~~p~---~-~~~~~~a~ 95 (369)
T 3hgu_A 22 DTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTINDL-RQFSDIS-HCLRQEPVANLVPQ---G-LPADSHPQ 95 (369)
T ss_dssp CHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGGG-GGSCCCG-GGGTTSCGGGGSCT---T-SCTTCCCE
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHHH-hhCCCch-hhhhcCCHHHcCCc---c-CCccccEE
Confidence 467789999985 56 89999986 553 57889999 5799999 99865 33222110 1 13455567
Q ss_pred eecccccCCCcccccccCHHHHHH
Q 006862 104 FLTSSGTSGGERKLMPTIEEELER 127 (628)
Q Consensus 104 f~~TSGTT~G~~K~IP~t~~~l~~ 127 (628)
...||||| |+||-+.+|...+..
T Consensus 96 i~~TSGTT-G~PKgv~~t~~~~~~ 118 (369)
T 3hgu_A 96 VYESGGTT-GAPKYVVAYDAWIEA 118 (369)
T ss_dssp EEEECC----CCEEEEECHHHHHH
T ss_pred EEECCCCC-CCCCEEEECHHHHHH
Confidence 88999999 899999999986544
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.41 E-value=1.4e-11 Score=139.14 Aligned_cols=128 Identities=16% Similarity=0.275 Sum_probs=86.6
Q ss_pred eEEEEcCCcc---chHHHHHhhcCCCceeccccccccccccccCCCCCC--CCCCceeecCCceEEEEEeCCCCCCCccc
Q 006862 307 VDVIVTGTMS---QYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCK--PSEVSYTLVPTMAYFEFLPVHRNNGVANS 381 (628)
Q Consensus 307 i~~~~~G~~~---~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~--p~~~~~~l~~~~~~fEFip~~~~~~~~~~ 381 (628)
++.+++||.. ..++.+++.+ |++++ +.||.||+.+.+...+... +...+. ..|+. -++.++.+.
T Consensus 343 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~v~ivd~~g------- 411 (580)
T 3etc_A 343 LKYAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTPGY-KIELMDRDG------- 411 (580)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECTTC-EEEEECTTS-------
T ss_pred ceEEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCcccc-CCCCC-EEEEECCCC-------
Confidence 5666667642 3345555666 78998 9999999955443222211 122222 22332 244444321
Q ss_pred CCCCccccccccceeeeccccCCCceEEEEEeec--------cceEe-------------eeeCCEEEEecccCCCCEEE
Q 006862 382 ISMPKSLNEKERQELVDLVDVKLGQEYELVVTTY--------AGLYR-------------YRVGDVLRVAGFKNKAPQFN 440 (628)
Q Consensus 382 ~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt~--------~GLyR-------------Yr~GDvv~v~gf~~~~P~~~ 440 (628)
.++.+|+.+||+|++. .|+|+ |||||++++.. ...+.
T Consensus 412 ------------------~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~----dG~l~ 469 (580)
T 3etc_A 412 ------------------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE----DGYLW 469 (580)
T ss_dssp ------------------CBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT----TSCEE
T ss_pred ------------------CCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC----CCcEE
Confidence 2467899999999853 34443 99999999973 45799
Q ss_pred EeeecCceEeccceeccHHHHHHHHHH
Q 006862 441 FICRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 441 f~gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
|+||.+|++++.|+++.+.+|+.+|.+
T Consensus 470 ~~GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 470 FVGRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp EEEESSSCEEETTEEECHHHHHHHHTT
T ss_pred EEecCCCEEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999965
No 9
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.40 E-value=2.2e-11 Score=134.75 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=87.6
Q ss_pred ccCCCCceeEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCC-------CCCCCCCceeecCCceEEE
Q 006862 299 RLWPNTKYVDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNP-------LCKPSEVSYTLVPTMAYFE 368 (628)
Q Consensus 299 ~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~-------~~~p~~~~~~l~~~~~~fE 368 (628)
...+.+ +.+++||. ....+.+++.+++++++ +.||+||+...+.... .+.....+. ..|+. -++
T Consensus 257 ~~~~~l---~~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~ 330 (511)
T 3e7w_A 257 DLLPHA---DTFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPDM-NIF 330 (511)
T ss_dssp TTCTTC---CEEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTTC-EEE
T ss_pred ccCCcc---cEEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcc-eeCCC-EEE
Confidence 345554 45555553 34456677788889999 9999999854321100 000011222 12332 233
Q ss_pred EEeCCCCCCCcccCCCCccccccccceeeeccccCCCceEEEEEee---ccceE-----------------eeeeCCEEE
Q 006862 369 FLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLY-----------------RYRVGDVLR 428 (628)
Q Consensus 369 Fip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLy-----------------RYr~GDvv~ 428 (628)
.++.+ . ..|..|+.+||+|+. ..|+| .|||||+++
T Consensus 331 i~d~~--------------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~ 385 (511)
T 3e7w_A 331 IMDEE--------------------G-----QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGF 385 (511)
T ss_dssp EECTT--------------------S-----CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEE
T ss_pred EECCC--------------------C-----CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEE
Confidence 33322 1 246789999999985 23433 599999998
Q ss_pred EecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHH
Q 006862 429 VAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 429 v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
+. ...+.|+||.+++++++|++++..+|++++.+
T Consensus 386 ~~-----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 419 (511)
T 3e7w_A 386 IQ-----DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQ 419 (511)
T ss_dssp EE-----TTEEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred cc-----CCeEEEEccccCEEEECCEEeCHHHHHHHHHh
Confidence 84 34799999999999999999999999999976
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.38 E-value=2.6e-11 Score=135.70 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=88.3
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCCC--CCCCCceeecCCceEEEEEeCCCCCCCccc
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLC--KPSEVSYTLVPTMAYFEFLPVHRNNGVANS 381 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~--~p~~~~~~l~~~~~~fEFip~~~~~~~~~~ 381 (628)
++.+++|+. ...++.+++.+++++++ +.||+||+...+...+.. .+...+. ..|+ .-.+.+++++.
T Consensus 311 lr~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~~~------ 381 (548)
T 2d1s_A 311 LVEIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGK-VVPL-FKAKVIDLDTK------ 381 (548)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBE-ECTT-CEEEEECTTTC------
T ss_pred eeEEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCc-cCCC-ceEEEEeCCcC------
Confidence 455666663 34456677788788888 999999985433222211 1111222 2233 23444443221
Q ss_pred CCCCccccccccceeeeccccCCCceEEEEEee---ccceE--------------eeeeCCEEEEecccCCCCEEEEeee
Q 006862 382 ISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLY--------------RYRVGDVLRVAGFKNKAPQFNFICR 444 (628)
Q Consensus 382 ~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLy--------------RYr~GDvv~v~gf~~~~P~~~f~gR 444 (628)
..|..|+.+||+|+. ..|+| .|||||++++.. ...+.|+||
T Consensus 382 ------------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR 439 (548)
T 2d1s_A 382 ------------------KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFFIVDR 439 (548)
T ss_dssp ------------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEEEE
T ss_pred ------------------ccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEEEecc
Confidence 146689999999986 34544 399999999973 347999999
Q ss_pred cCceEeccceeccHHHHHHHHHH
Q 006862 445 KNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 445 ~~~~l~i~gek~~e~~v~~av~~ 467 (628)
.+++++++|++++..+|++++.+
T Consensus 440 ~~d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 440 LKSLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp GGGCBCBTTCCBCHHHHHHHHHT
T ss_pred ccceEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999965
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.37 E-value=1.6e-11 Score=135.82 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=86.9
Q ss_pred CCCCceeEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCCC-------CCCCCceeecCCceEEEEE
Q 006862 301 WPNTKYVDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLC-------KPSEVSYTLVPTMAYFEFL 370 (628)
Q Consensus 301 WP~l~~i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~-------~p~~~~~~l~~~~~~fEFi 370 (628)
.|+ ++.+++|+. ....+.+.+.+++++++ +.||+||+...+...+.. .+...+.. .++ .-...+
T Consensus 260 ~~~---lr~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~-~~~~i~ 333 (512)
T 3fce_A 260 LPN---MKTFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC-KSD-CRLLIM 333 (512)
T ss_dssp STT---CCEEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEE-CTT-CEEEEE
T ss_pred Ccc---ccEEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCccccc-cCC-cEEEEE
Confidence 455 455555653 33456677778889999 999999985432111100 00112221 122 223333
Q ss_pred eCCCCCCCcccCCCCccccccccceeeeccccCCCceEEEEEee---ccceE-----------------eeeeCCEEEEe
Q 006862 371 PVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLY-----------------RYRVGDVLRVA 430 (628)
Q Consensus 371 p~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLy-----------------RYr~GDvv~v~ 430 (628)
+.+ . ..+..|+.+||+|+. ..|+| -|||||++++.
T Consensus 334 d~~--------------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~ 388 (512)
T 3fce_A 334 KED--------------------G-----TIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE 388 (512)
T ss_dssp CSS--------------------S-----CBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEE
T ss_pred CCC--------------------C-----CCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEec
Confidence 321 1 146689999999985 44554 39999999874
Q ss_pred cccCCCCEEEEeeecCceEeccceeccHHHHHHHHHHH
Q 006862 431 GFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 431 gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a 468 (628)
...+.|+||.+|+++++|++++..+|++++.+.
T Consensus 389 -----dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 389 -----NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp -----TTEEEEEEEGGGCEEETTEEECHHHHHHHHHHS
T ss_pred -----CCEEEEecccCCEEEECCEEECHHHHHHHHHhC
Confidence 348999999999999999999999999999763
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.37 E-value=2.9e-11 Score=133.80 Aligned_cols=129 Identities=11% Similarity=0.167 Sum_probs=86.0
Q ss_pred eEEEEcCCcc---chHHHHHhhcCCCceeccccccccccccccCCCCCCCCC-Cc-eeecCCceEEEEEeCCCCCCCccc
Q 006862 307 VDVIVTGTMS---QYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSE-VS-YTLVPTMAYFEFLPVHRNNGVANS 381 (628)
Q Consensus 307 i~~~~~G~~~---~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~p~~-~~-~~l~~~~~~fEFip~~~~~~~~~~ 381 (628)
++.+++|+.. ...+.++..+ |++++ +.||+||+.+.... +...... .. -..+|+. -.+.++.+..
T Consensus 270 lr~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~-~~~~~~~~~~~G~p~~~~-~~~i~d~~~g------ 339 (503)
T 4fuq_A 270 MRLFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSN-PYDGDRVPGAVGPALPGV-SARVTDPETG------ 339 (503)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCC-CSSSCCCTTEEEEBCTTC-EEEEECTTTC------
T ss_pred cEEEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCccccc-CCCCCCcCCccccCCCCe-EEEEEECCCC------
Confidence 5666667642 3345555666 68888 99999998554321 1111010 11 1112222 2344442211
Q ss_pred CCCCccccccccceeeeccccCCCceEEEEEee---ccceEe--------------eeeCCEEEEecccCCCCEEEEeee
Q 006862 382 ISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKNKAPQFNFICR 444 (628)
Q Consensus 382 ~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR--------------Yr~GDvv~v~gf~~~~P~~~f~gR 444 (628)
.+|..|+.+||+|+. ..|+|+ |||||++++.. ...+.|+||
T Consensus 340 ------------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR 397 (503)
T 4fuq_A 340 ------------------KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RGYVHILGR 397 (503)
T ss_dssp ------------------CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TCEEEECCS
T ss_pred ------------------CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CCcEEEEec
Confidence 246789999999985 456653 99999999973 458999999
Q ss_pred cCceEeccceeccHHHHHHHHHH
Q 006862 445 KNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 445 ~~~~l~i~gek~~e~~v~~av~~ 467 (628)
.+++++++|+++...+|++++.+
T Consensus 398 ~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 398 GKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp STTCEEETTEEECHHHHHHHHHT
T ss_pred CCCEEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999965
No 13
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.35 E-value=3.1e-11 Score=134.48 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=87.7
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccc--cC----CCC-CCCCCCceeecCCceEEEEEeCCCCC
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGV--NL----NPL-CKPSEVSYTLVPTMAYFEFLPVHRNN 376 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi--~~----~~~-~~p~~~~~~l~~~~~~fEFip~~~~~ 376 (628)
++.+++|+. ....+.+++.+++++++ +.||+||+...+ +. .+. ..+...+. ..|+. -++.++.+..
T Consensus 299 lr~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~~~- 374 (536)
T 3ni2_A 299 LRMIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRNA-EMKIVDPETG- 374 (536)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEEECTTTC-
T ss_pred ceEEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCCCc-EEEEEeCCCC-
Confidence 556666663 33456677778889998 999999985321 11 000 01111222 22332 3444443321
Q ss_pred CCcccCCCCccccccccceeeeccccCCCceEEEEEee---ccceEe--------------eeeCCEEEEecccCCCCEE
Q 006862 377 GVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKNKAPQF 439 (628)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR--------------Yr~GDvv~v~gf~~~~P~~ 439 (628)
..|..|+.+||+|+. ..|+|+ |||||++++.. ...+
T Consensus 375 -----------------------~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~----dG~l 427 (536)
T 3ni2_A 375 -----------------------ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD----DDEL 427 (536)
T ss_dssp -----------------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCE
T ss_pred -----------------------cCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----CceE
Confidence 246789999999985 445552 99999999973 4579
Q ss_pred EEeeecCceEeccceeccHHHHHHHHHH
Q 006862 440 NFICRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 440 ~f~gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
.|+||.+++++++|+++...+|++++.+
T Consensus 428 ~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 428 FIVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp EEEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred EEEecccceEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999999965
No 14
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.33 E-value=4e-11 Score=132.80 Aligned_cols=129 Identities=11% Similarity=0.124 Sum_probs=80.3
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCCC-------CCCCCceeecCCceEEEEEeCCCCC
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLC-------KPSEVSYTLVPTMAYFEFLPVHRNN 376 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~-------~p~~~~~~l~~~~~~fEFip~~~~~ 376 (628)
++.+++|+. ......+.+.+++++++ +.||+||+...+...... .+...+. ..|+. -...++.+
T Consensus 266 lr~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i~d~~--- 339 (521)
T 3l8c_A 266 LTHFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDS-PTYIIDED--- 339 (521)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTS-CEEEECTT---
T ss_pred ceEEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcccccc-ccCCC-EEEEECCC---
Confidence 455555653 33455666777889999 999999985432110000 0000111 11222 12233321
Q ss_pred CCcccCCCCccccccccceeeeccccCCCceEEEEEee---ccceE-----------------eeeeCCEEEEecccCCC
Q 006862 377 GVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLY-----------------RYRVGDVLRVAGFKNKA 436 (628)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLy-----------------RYr~GDvv~v~gf~~~~ 436 (628)
..+|..|+.+||+|+. ..|+| -|||||++++.. .
T Consensus 340 ----------------------g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----d 393 (521)
T 3l8c_A 340 ----------------------GKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----D 393 (521)
T ss_dssp ----------------------SCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----S
T ss_pred ----------------------cCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----C
Confidence 1246789999999986 44554 299999999973 4
Q ss_pred CEEEEeeecCceEeccceeccHHHHHHHHHH
Q 006862 437 PQFNFICRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 437 P~~~f~gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
..+.|+||.+++++++|++++..+|++++.+
T Consensus 394 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 394 NILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp SCEEEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred CeEEEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 5799999999999999999999999999965
No 15
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.32 E-value=7e-11 Score=130.87 Aligned_cols=131 Identities=14% Similarity=0.204 Sum_probs=82.4
Q ss_pred eEEEEcCCcc---chHHHHHhhcCCCceeccccccccccccccCCCCCC--CCCCceeecCCceEEEEEeCCCCCCCccc
Q 006862 307 VDVIVTGTMS---QYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCK--PSEVSYTLVPTMAYFEFLPVHRNNGVANS 381 (628)
Q Consensus 307 i~~~~~G~~~---~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~--p~~~~~~l~~~~~~fEFip~~~~~~~~~~ 381 (628)
++.+++|+.. ...+.++..+ +++++ +.||+||+.+.+...+... +...+. ..|+. -++.++.+
T Consensus 274 lr~i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i~d~~-------- 341 (505)
T 3nyq_A 274 ARLLVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGV-PLPGV-ELRLVEED-------- 341 (505)
T ss_dssp CSEEEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-EEEEC-----------
T ss_pred ceEEEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCccc-CCCCC-EEEEECCC--------
Confidence 3456666642 3345555666 78898 9999999865433222111 111122 12222 23333322
Q ss_pred CCCCccccccccceeeeccccCCCceEEEEEee---ccceEe--------------eeeCCEEEEecccCCCCEEEEeee
Q 006862 382 ISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKNKAPQFNFICR 444 (628)
Q Consensus 382 ~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR--------------Yr~GDvv~v~gf~~~~P~~~f~gR 444 (628)
.+.+. .+..|+.+||+|+. ..|+|. |||||++++.. ...+.|+||
T Consensus 342 ------------g~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR 403 (505)
T 3nyq_A 342 ------------GTPIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGR 403 (505)
T ss_dssp --------------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEE
T ss_pred ------------CCCcc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCC
Confidence 11111 12348899999985 456553 99999999973 457999999
Q ss_pred c-CceEeccceeccHHHHHHHHHH
Q 006862 445 K-NVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 445 ~-~~~l~i~gek~~e~~v~~av~~ 467 (628)
. +++++++|+++...+|++++.+
T Consensus 404 ~~d~~ik~~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 404 KATDLIKSGGYKIGAGEIENALLE 427 (505)
T ss_dssp SSCCCEEETTEEECHHHHHHHHTT
T ss_pred ccCceEEeCCEEECHHHHHHHHHH
Confidence 8 5899999999999999999964
No 16
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.30 E-value=8.4e-11 Score=129.88 Aligned_cols=129 Identities=13% Similarity=0.197 Sum_probs=84.9
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCCCCCCCCceeecCC-ceEEEEEeCCCCCCCcccC
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPT-MAYFEFLPVHRNNGVANSI 382 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~p~~~~~~l~~~-~~~fEFip~~~~~~~~~~~ 382 (628)
++.+++|+. ...++.+++.+ +++++ +.||+||+.+.+... . ...+..-.|. ..-...++.+...
T Consensus 274 lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~---~~~~~~g~p~~~~~~~i~~~~~~~------ 341 (504)
T 1t5h_X 274 LRHVTFAGATMPDAVLETVHQHL-PGEKV-NIYGTTEAMNSLYMR-Q---PKTGTEMAPGFFSEVRIVRIGGGV------ 341 (504)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHC-CSEEE-EEEEETTTEEEEEEE-S---CSSSSEEBCCTTCCEEEECTTSCT------
T ss_pred ccEEEEcCCcCCHHHHHHHHHhc-Cccee-eeecccccccccccc-C---CCCCccccCCCCCceeEEeccCCC------
Confidence 566666664 33456666777 67888 999999984333211 1 1111111121 1112223322100
Q ss_pred CCCccccccccceeeeccccCCCceEEEEEe-e---ccceEe-------------eeeCCEEEEecccCCCCEEEEeeec
Q 006862 383 SMPKSLNEKERQELVDLVDVKLGQEYELVVT-T---YAGLYR-------------YRVGDVLRVAGFKNKAPQFNFICRK 445 (628)
Q Consensus 383 ~~~~~~~~~~~~~~v~l~eve~G~~YeLVvT-t---~~GLyR-------------Yr~GDvv~v~gf~~~~P~~~f~gR~ 445 (628)
...|..|+.+||+|+ . ..|+|+ |||||++++.. ...+.|+||.
T Consensus 342 ----------------~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~ 401 (504)
T 1t5h_X 342 ----------------DEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRV 401 (504)
T ss_dssp ----------------TCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEG
T ss_pred ----------------CCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcc
Confidence 024678999999998 4 357775 99999999973 3579999999
Q ss_pred CceEeccceeccHHHHHHHHHH
Q 006862 446 NVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 446 ~~~l~i~gek~~e~~v~~av~~ 467 (628)
+++++++|+++...+|++++.+
T Consensus 402 dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 402 DDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp GGCEEETTEEECHHHHHHHHTT
T ss_pred cCEEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999964
No 17
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.27 E-value=2.3e-11 Score=135.94 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=62.8
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCCCCCCCCce-eecCCceEEEEEeCCCCCCCcccC
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSY-TLVPTMAYFEFLPVHRNNGVANSI 382 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~p~~~~~-~l~~~~~~fEFip~~~~~~~~~~~ 382 (628)
++.+++|+. ...++.+++.++...++ +.||+||+...+...+......... ...|+ .-.+.++++..
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~-~~~~i~d~~~~------- 379 (550)
T 3rix_A 309 LHEIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKVVPF-FEAKVVDLDTG------- 379 (550)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEECTT-CEEEEECTTTC-------
T ss_pred ccEEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccccCC-cEEEEEeCCCC-------
Confidence 556666664 33456666777333466 9999999865443332221111111 12232 23444443321
Q ss_pred CCCccccccccceeeeccccCCCceEEEEEee---ccceEe--------------eeeCCEEEEecccCCCCEEEEeeec
Q 006862 383 SMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKNKAPQFNFICRK 445 (628)
Q Consensus 383 ~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR--------------Yr~GDvv~v~gf~~~~P~~~f~gR~ 445 (628)
..|..|+.+||+|+. ..|+|. |||||++++.. ...+.|+||.
T Consensus 380 -----------------~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~GR~ 438 (550)
T 3rix_A 380 -----------------KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEHFFIVDRL 438 (550)
T ss_dssp -----------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEC---
T ss_pred -----------------cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----CceEEEEecc
Confidence 246789999999985 345552 99999999973 4579999999
Q ss_pred CceEeccceeccHHHHHHHHHHH
Q 006862 446 NVVLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 446 ~~~l~i~gek~~e~~v~~av~~a 468 (628)
+++++++|+++...+|++++.+.
T Consensus 439 dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 439 KSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp -----------------------
T ss_pred hheeEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999764
No 18
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.25 E-value=2.9e-11 Score=133.63 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=70.1
Q ss_pred eEEEEcCCccchHHHHHhhcCCCceeccccccccccccccCCC-CCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCC
Q 006862 307 VDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNP-LCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMP 385 (628)
Q Consensus 307 i~~~~~G~~~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~-~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~ 385 (628)
++.+.+|+....++.++..+++++++ +.||+||+.......+ ...+...+.. .|+. -++.++.+.
T Consensus 274 lr~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~p-~~~~-~~~i~d~~~----------- 339 (509)
T 3ivr_A 274 LRAVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGRP-LFWR-TVAVVDAED----------- 339 (509)
T ss_dssp CCEEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCEE-CTTC-EEEEECTTS-----------
T ss_pred hheecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCccccc-CCCc-EEEEECCCC-----------
Confidence 45566666656677888888899999 9999999854221111 1111112222 2332 344444321
Q ss_pred ccccccccceeeeccccCCCceEEEEEee---ccceEe-------------eeeCCEEEEecccCCCCEEEEeeec--Cc
Q 006862 386 KSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQFNFICRK--NV 447 (628)
Q Consensus 386 ~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR-------------Yr~GDvv~v~gf~~~~P~~~f~gR~--~~ 447 (628)
.+|..|+.+||+|+. ..|+|+ |||||++++.. ...+.|+||. ++
T Consensus 340 --------------~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~d 401 (509)
T 3ivr_A 340 --------------RPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEKE 401 (509)
T ss_dssp --------------CBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC----
T ss_pred --------------CCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcce
Confidence 246789999999986 467775 99999999973 4579999999 99
Q ss_pred eEeccceeccHHHHHHHHHHH
Q 006862 448 VLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 448 ~l~i~gek~~e~~v~~av~~a 468 (628)
+++++|+++...+|++++.+.
T Consensus 402 ~ik~~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 402 LIKTGGENVYPAEVEGALKQH 422 (509)
T ss_dssp ---------------------
T ss_pred eEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999764
No 19
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.25 E-value=8.2e-11 Score=131.48 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=78.1
Q ss_pred eEEEEcCCc---cchHHHHHhh----cC--CCceeccccccccccccccCCCCC---CCCCCceeecCCceEEEEEeCCC
Q 006862 307 VDVIVTGTM---SQYIPILDYY----SN--GLPLVCTMYASSECYFGVNLNPLC---KPSEVSYTLVPTMAYFEFLPVHR 374 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~----~~--g~p~~~~~Y~aSEg~~gi~~~~~~---~p~~~~~~l~~~~~~fEFip~~~ 374 (628)
++.+++|+. ...++.+.+. ++ +++++ +.||+||+...+...+.. .+...+.. +|+. -++.++.++
T Consensus 298 lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p-~~~~-~~~i~d~~~ 374 (549)
T 3g7s_A 298 LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQGVP-MSDI-ELKVISLED 374 (549)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCCEE-CTTC-EEEEECSSS
T ss_pred eeEEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCcccc-CCCC-EEEEEeCCC
Confidence 556666663 2334455544 53 27888 999999985433222110 11112222 2332 344444332
Q ss_pred CCCCcccCCCCccccccccceeeeccccCCCceEEEEEee---ccceE------------------eeeeCCEEEEeccc
Q 006862 375 NNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLY------------------RYRVGDVLRVAGFK 433 (628)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLy------------------RYr~GDvv~v~gf~ 433 (628)
.+ +|..|+.+||+|+. ..|+| .|||||++++..
T Consensus 375 -------------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~-- 428 (549)
T 3g7s_A 375 -------------------GR-----ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE-- 428 (549)
T ss_dssp -------------------CC-----EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT--
T ss_pred -------------------Cc-----CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcC--
Confidence 11 45689999999985 33443 699999999973
Q ss_pred CCCCEEEEeeecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEeEEEee
Q 006862 434 NKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYA 486 (628)
Q Consensus 434 ~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~eft~~~ 486 (628)
...+.|+||.+++++++|+++...+|++++.+. .+ |.+..++.
T Consensus 429 --dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~------p~--V~~a~Vv~ 471 (549)
T 3g7s_A 429 --EGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH------EA--VMDVAVIG 471 (549)
T ss_dssp --TSCEEEEEEC------------CHHHHHHHTTS------TT--EEEEEEEC
T ss_pred --CceEEEeccccceEEECCEEECHHHHHHHHHhC------CC--eeeEEEEe
Confidence 458999999999999999999999999998642 23 55666553
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.25 E-value=1.7e-10 Score=129.73 Aligned_cols=129 Identities=12% Similarity=0.222 Sum_probs=83.5
Q ss_pred eEEEEcCCccchHHHHHhhcCCCceeccccccccccccccCCCCC-----CCCCCceeecCCceEEEEEeCCCCCCCccc
Q 006862 307 VDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLC-----KPSEVSYTLVPTMAYFEFLPVHRNNGVANS 381 (628)
Q Consensus 307 i~~~~~G~~~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~-----~p~~~~~~l~~~~~~fEFip~~~~~~~~~~ 381 (628)
++.+++|+.....+.++.+...++++ +.||+||+.+.+...... .+...+.. .|+. -+..++.+
T Consensus 295 lr~~~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p-~~~~-~v~i~d~~-------- 363 (563)
T 1amu_A 295 IQTLITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAP-IQNT-QIYIVDEN-------- 363 (563)
T ss_dssp CSEEEEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBEE-CTTE-EEEEECTT--------
T ss_pred ccEEEEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCcccce-eCCC-EEEEECCC--------
Confidence 45556666544445555555457888 999999985422111100 00112222 2222 23333321
Q ss_pred CCCCccccccccceeeeccccCCCceEEEEEee---ccceE--------------------eeeeCCEEEEecccCCCCE
Q 006862 382 ISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLY--------------------RYRVGDVLRVAGFKNKAPQ 438 (628)
Q Consensus 382 ~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLy--------------------RYr~GDvv~v~gf~~~~P~ 438 (628)
...+..|+.+||+|+. ..|+| .|||||++++.. ...
T Consensus 364 -----------------~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~ 422 (563)
T 1amu_A 364 -----------------LQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGN 422 (563)
T ss_dssp -----------------SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSC
T ss_pred -----------------cCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCe
Confidence 1246689999999986 34543 699999999873 347
Q ss_pred EEEeeecCceEeccceeccHHHHHHHHHH
Q 006862 439 FNFICRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 439 ~~f~gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
+.|+||.+++++++|+++...+|++++.+
T Consensus 423 l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 423 IEYLGRIDNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp EEEEEEGGGEEEETTEEEEHHHHHHHHTT
T ss_pred EEEeccccCEEEECCEEeCHHHHHHHHHh
Confidence 99999999999999999999999999965
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.25 E-value=9.5e-11 Score=130.12 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=83.0
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccc-cccccCCC-CCCCCCCceeecCCceEEEEEeCCCCCCCccc
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSEC-YFGVNLNP-LCKPSEVSYTLVPTMAYFEFLPVHRNNGVANS 381 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg-~~gi~~~~-~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~ 381 (628)
++.+++||. ...++.+++.+ |++++ +.||+||+ .+.+...+ .+.+...+. ..|+ .-++.++.+
T Consensus 302 lr~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~-------- 369 (529)
T 2v7b_A 302 IRICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPG-YEIELRDEA-------- 369 (529)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECTT-CEEEEECTT--------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCccc-CCCC-CEEEEECCC--------
Confidence 556666663 33456666667 78988 99999998 33222111 111111222 2233 234444422
Q ss_pred CCCCccccccccceeeeccccCCCceEEEEEee---ccceEe-------------eeeCCEEEEecccCCCCEEEEeeec
Q 006862 382 ISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQFNFICRK 445 (628)
Q Consensus 382 ~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR-------------Yr~GDvv~v~gf~~~~P~~~f~gR~ 445 (628)
. ..|..|+.+||+|+. ..|+|+ |+|||++++.. ...+.|+||.
T Consensus 370 ------------g-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~ 428 (529)
T 2v7b_A 370 ------------G-----HAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRS 428 (529)
T ss_dssp ------------S-----CBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEG
T ss_pred ------------C-----CCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCcc
Confidence 1 146689999999986 456664 89999999873 4579999999
Q ss_pred CceEeccceeccHHHHHHHHHH
Q 006862 446 NVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 446 ~~~l~i~gek~~e~~v~~av~~ 467 (628)
+++++++|++++..+|++++.+
T Consensus 429 dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 429 DDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp GGCBC----CBCHHHHHHHHTT
T ss_pred CCeEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999965
No 22
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.24 E-value=1.5e-10 Score=129.04 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=84.7
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCCCCC----CCCceeecCCceEEEEEeCCCCCCCc
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKP----SEVSYTLVPTMAYFEFLPVHRNNGVA 379 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~p----~~~~~~l~~~~~~fEFip~~~~~~~~ 379 (628)
++.+++||. ...++.+++.+ |++++ +.||.||+.+.+... ..+. ...+..+ ++..-...++.+
T Consensus 300 lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p~-~~~~~~~i~d~~------ 369 (539)
T 1mdb_A 300 LQVLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRL-DDPEEIIVNTQGKPM-SPYDESRVWDDH------ 369 (539)
T ss_dssp CCEEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCT-TSCHHHHHHCCCEES-STTCEEEEECTT------
T ss_pred eeEEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCC-CCcHHhcCCCCCccc-CCCceEEEECCC------
Confidence 456666664 23345555667 78888 999999986554211 1100 0122222 222123333321
Q ss_pred ccCCCCccccccccceeeeccccCCCceEEEEEee---ccceE--------------eeeeCCEEEEecccCCCCEEEEe
Q 006862 380 NSISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLY--------------RYRVGDVLRVAGFKNKAPQFNFI 442 (628)
Q Consensus 380 ~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLy--------------RYr~GDvv~v~gf~~~~P~~~f~ 442 (628)
..+|..|+.+||+|+. ..|+| .|||||++++.. ...+.|+
T Consensus 370 -------------------~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~ 426 (539)
T 1mdb_A 370 -------------------DRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVVE 426 (539)
T ss_dssp -------------------SCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEE
T ss_pred -------------------CCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEEe
Confidence 1246789999999986 34554 299999999973 3579999
Q ss_pred eecCceEeccceeccHHHHHHHHHH
Q 006862 443 CRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 443 gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
||.+++++++|+++...+|++++.+
T Consensus 427 GR~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 427 GRAKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp EEGGGCEECSSCEECHHHHHHHHTT
T ss_pred ccccceEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999964
No 23
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.24 E-value=1.2e-10 Score=129.13 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=52.2
Q ss_pred cCCCceEEEEEee---ccceEe-------------eeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHH
Q 006862 402 VKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAV 465 (628)
Q Consensus 402 ve~G~~YeLVvTt---~~GLyR-------------Yr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av 465 (628)
+..| .+||+|+. ..|+|. |||||++++.. ...+.|+||.+++++++|+++...+|++++
T Consensus 358 ~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 432 (517)
T 3r44_A 358 REHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRLKDMIISGGENVYPAEIESVI 432 (517)
T ss_dssp ESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECGGGCEEETTEEECHHHHHHHH
T ss_pred CCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCCcCEEEECCEEECHHHHHHHH
Confidence 3456 79999987 456664 99999999973 457999999999999999999999999998
Q ss_pred HH
Q 006862 466 KN 467 (628)
Q Consensus 466 ~~ 467 (628)
.+
T Consensus 433 ~~ 434 (517)
T 3r44_A 433 IG 434 (517)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 24
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.23 E-value=6.8e-10 Score=126.98 Aligned_cols=162 Identities=16% Similarity=0.187 Sum_probs=90.9
Q ss_pred ccCCCceEEEEEeec-----cceE----------------eeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHH
Q 006862 401 DVKLGQEYELVVTTY-----AGLY----------------RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEV 459 (628)
Q Consensus 401 eve~G~~YeLVvTt~-----~GLy----------------RYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~ 459 (628)
+|..|+.+||+|+.. .|+| -|||||++++.. ...+.|+||.++++++.|+++...
T Consensus 455 ~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~i~GR~dd~Ik~~G~rI~~~ 530 (652)
T 1pg4_A 455 PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWITGRVDDVLNVSGHRLGTA 530 (652)
T ss_dssp BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEEEESSSEEEETTEEEEHH
T ss_pred CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CCcEEEEecCCCEEEECCEEECHH
Confidence 466799999999862 2333 299999999973 357999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEeEEEeecCCCCCc-eEEEEEEEeeCCCCCCCcchHHHHHHHHHHHhChhhHhcccCCCc
Q 006862 460 ELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPG-HYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKS 538 (628)
Q Consensus 460 ~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~-~Yvl~~El~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~~~ 538 (628)
||+++|.+. .+ |.+..++.-.....+ .-+.|+.+.. ....+.+..+++.+.+.+.|.. |.
T Consensus 531 eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~l~a~Vv~~~--~~~~~~~~~~~l~~~l~~~l~~-~~-------- 591 (652)
T 1pg4_A 531 EIESALVAH------PK--IAEAAVVGIPHAIKGQAIYAYVTLNH--GEEPSPELYAEVRNWVRKEIGP-LA-------- 591 (652)
T ss_dssp HHHHHHHHS------TT--EEEEEEEEEEETTTEEEEEEEEEECT--TCCCCHHHHHHHHHHHHHHTCG-GG--------
T ss_pred HHHHHHHhC------CC--cceEEEEEEEcCCCCeEEEEEEEECC--CCCCCHHHHHHHHHHHHHhCCC-Cc--------
Confidence 999999753 22 455555421111222 2345666542 1222223334444455444432 22
Q ss_pred cCCeEEEEcC------CccHH--HHHHHHHhcCCCCCCCCCCcccCCHhHHHHHhhccc
Q 006862 539 IGPLEIKIVE------PGTFD--KLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVV 589 (628)
Q Consensus 539 l~pl~v~~V~------~GtF~--~l~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~v~ 589 (628)
.|-.|.+|. .|-.+ .+++.. .+. ..+++.+--+.|++.++.+.+.+.
T Consensus 592 -~P~~i~~v~~lP~T~sGKi~R~~L~~~~--~~~-~~~~~~~~~l~~p~~~~~~~~~~~ 646 (652)
T 1pg4_A 592 -TPDVLHWTDSLPKTRSGKIMRRILRKIA--AGD-TSNLGDTSTLADPGVVEKLLEEKQ 646 (652)
T ss_dssp -CCSEEEECSCCCBCTTSCBCHHHHHHHH--HTC-----------CCTTHHHHHHHHHH
T ss_pred -CCeEEEEcCCCCCCCCccchHHHHHHHH--hCC-CCCCCCccccCCHHHHHHHHHHhh
Confidence 233455543 23322 233222 221 135566677778888888876543
No 25
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.23 E-value=4.2e-10 Score=126.59 Aligned_cols=128 Identities=15% Similarity=0.184 Sum_probs=84.2
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCC--CCCCCCceeecCCceEEEEEeCCCCCCCccc
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPL--CKPSEVSYTLVPTMAYFEFLPVHRNNGVANS 381 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~--~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~ 381 (628)
++.+++|+. ...++.++..+ |++++ +.||+||+.+.+...+. ..+...+.. .|+. -++.++.+
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~~-~v~i~d~~-------- 391 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGTA-ASCY-DVQIIDDK-------- 391 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCEE-CTTC-CEEEECTT--------
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCccccc-CCCc-eEEEECCC--------
Confidence 445555553 33345566666 78888 99999998543322211 111112221 2222 23333322
Q ss_pred CCCCccccccccceeeeccccCCCceEEEEEe-----e---ccceEe-------------eeeCCEEEEecccCCCCEEE
Q 006862 382 ISMPKSLNEKERQELVDLVDVKLGQEYELVVT-----T---YAGLYR-------------YRVGDVLRVAGFKNKAPQFN 440 (628)
Q Consensus 382 ~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvT-----t---~~GLyR-------------Yr~GDvv~v~gf~~~~P~~~ 440 (628)
...|..|+.+||+|+ . ..|+|. |+|||++++.. ...+.
T Consensus 392 -----------------g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~ 450 (570)
T 3c5e_A 392 -----------------GNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQ 450 (570)
T ss_dssp -----------------SCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEE
T ss_pred -----------------CCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEE
Confidence 124678999999998 2 345552 99999999873 34799
Q ss_pred EeeecCceEeccceeccHHHHHHHHHH
Q 006862 441 FICRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 441 f~gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
|+||.+++++++|+++...+|++++.+
T Consensus 451 ~~GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 451 FMGRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp EEEEGGGCEEETTEEECHHHHHHHHHT
T ss_pred EEecCCCEEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999965
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.21 E-value=6.4e-11 Score=132.92 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=54.0
Q ss_pred cccCCCceEEEEEee---ccceE----------------------eeeeCCEEEEecccCCCCEEEEeeecCceEeccce
Q 006862 400 VDVKLGQEYELVVTT---YAGLY----------------------RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSD 454 (628)
Q Consensus 400 ~eve~G~~YeLVvTt---~~GLy----------------------RYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~ge 454 (628)
.++..|+.+||+|+. ..|+| .|||||++++. .-.+.|+||.+|+++++|+
T Consensus 392 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----dG~l~~~GR~dd~Ik~~G~ 466 (590)
T 3kxw_A 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----ENELYVTGRIKDLIIIYGK 466 (590)
T ss_dssp CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----TTEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----CCEEEEEcCccceEEECCE
Confidence 357789999999986 34443 69999999887 2369999999999999999
Q ss_pred eccHHHHHHHHHHH
Q 006862 455 KTDEVELQNAVKNA 468 (628)
Q Consensus 455 k~~e~~v~~av~~a 468 (628)
+++..+|+.++...
T Consensus 467 ~v~p~eIE~~l~~~ 480 (590)
T 3kxw_A 467 NHYPQDIEFSLMHS 480 (590)
T ss_dssp TTHHHHHHHHHHHS
T ss_pred ecCHHHHHHHHHhc
Confidence 99999999999553
No 27
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.20 E-value=4.6e-10 Score=127.36 Aligned_cols=129 Identities=13% Similarity=0.176 Sum_probs=85.0
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCCCC---CCCCceeecCCceEEEEEeCCCCCCCcc
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCK---PSEVSYTLVPTMAYFEFLPVHRNNGVAN 380 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~---p~~~~~~l~~~~~~fEFip~~~~~~~~~ 380 (628)
++.+++||. ....+.+...+ +++++ +.||.||+.+......... +...+..+.++. -...++.+
T Consensus 304 lr~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~-~~~i~d~~------- 373 (617)
T 3rg2_A 304 LKLLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDD-EVWVADAE------- 373 (617)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTTC-EEEEECTT-------
T ss_pred ccEEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCCCc-eEEEECCC-------
Confidence 456666664 33345555666 78888 9999999865432111000 001222222222 22223321
Q ss_pred cCCCCccccccccceeeeccccCCCceEEEEEee---ccceEe--------------eeeCCEEEEecccCCCCEEEEee
Q 006862 381 SISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKNKAPQFNFIC 443 (628)
Q Consensus 381 ~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR--------------Yr~GDvv~v~gf~~~~P~~~f~g 443 (628)
...|..|+.+||+|+. ..|+|. |||||++++.. ...+.|+|
T Consensus 374 ------------------~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----dG~l~~~G 431 (617)
T 3rg2_A 374 ------------------GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----EGYITVQG 431 (617)
T ss_dssp ------------------SCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEE
T ss_pred ------------------CCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----CceEEEEe
Confidence 1246789999999985 346553 99999999973 45799999
Q ss_pred ecCceEeccceeccHHHHHHHHHH
Q 006862 444 RKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 444 R~~~~l~i~gek~~e~~v~~av~~ 467 (628)
|.+++++++|+++...+|++++.+
T Consensus 432 R~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 432 REKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp ECSSEEEETTEEEEHHHHHHHHTT
T ss_pred ecCCEEEECCEEeCHHHHHHHHHh
Confidence 999999999999999999999965
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.20 E-value=8.4e-11 Score=131.56 Aligned_cols=64 Identities=25% Similarity=0.448 Sum_probs=33.5
Q ss_pred ccCCCceEEEEEee---ccceE---------------eeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHH
Q 006862 401 DVKLGQEYELVVTT---YAGLY---------------RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQ 462 (628)
Q Consensus 401 eve~G~~YeLVvTt---~~GLy---------------RYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~ 462 (628)
.|..|+.+||+|.. ..|+| .|||||++++.. ...+.|+||.+|+++++|++++..+|+
T Consensus 368 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR~dd~Ik~~G~~v~p~eIE 443 (562)
T 3ite_A 368 HVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLGRKDEQVKVRGQRLELGEVS 443 (562)
T ss_dssp BCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEEEC-----------------
T ss_pred CCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEccccCEEeECcEEECHHHHH
Confidence 46789999999975 45655 499999999973 458999999999999999999999999
Q ss_pred HHHHHH
Q 006862 463 NAVKNA 468 (628)
Q Consensus 463 ~av~~a 468 (628)
++|.+.
T Consensus 444 ~~l~~~ 449 (562)
T 3ite_A 444 EVIRSL 449 (562)
T ss_dssp ------
T ss_pred HHHHhc
Confidence 999764
No 29
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.18 E-value=4e-11 Score=133.94 Aligned_cols=130 Identities=11% Similarity=0.141 Sum_probs=65.8
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCCCCCC---CCCCceeecCCceEEEEEeCCCCCCCcc
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCK---PSEVSYTLVPTMAYFEFLPVHRNNGVAN 380 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~---p~~~~~~l~~~~~~fEFip~~~~~~~~~ 380 (628)
++.+++|+. ....+.+++.+ +++++ +.||.||+.+.+....... +...+..+.++ .-++.++.+
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~~------- 378 (544)
T 3o83_A 309 LKLLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD-DEIKIVDEQ------- 378 (544)
T ss_dssp CCEEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCTT-CEEEEECTT-------
T ss_pred ceEEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecCCC-cEEEEECCC-------
Confidence 455555653 33345566667 78888 9999999865432111000 00122222232 223333321
Q ss_pred cCCCCccccccccceeeeccccCCCceEEEEEee---ccceEe--------------eeeCCEEEEecccCCCCEEEEee
Q 006862 381 SISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKNKAPQFNFIC 443 (628)
Q Consensus 381 ~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR--------------Yr~GDvv~v~gf~~~~P~~~f~g 443 (628)
..+|..|+.+||+|+. ..|+|+ |||||++++.. ...+.|+|
T Consensus 379 ------------------~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~G 436 (544)
T 3o83_A 379 ------------------YREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DGNLRVVG 436 (544)
T ss_dssp ------------------SCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TSCEEEEE
T ss_pred ------------------CCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CCCEEEEe
Confidence 1246789999999986 345552 99999999973 45899999
Q ss_pred ecCceEeccceeccHHHHHHHHHHH
Q 006862 444 RKNVVLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 444 R~~~~l~i~gek~~e~~v~~av~~a 468 (628)
|.+++++++|++++..+|++++.+.
T Consensus 437 R~dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 437 RIKDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp EEC----------------------
T ss_pred ecCCEEEeCCEEECHHHHHHHHHhC
Confidence 9999999999999999999999764
No 30
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.16 E-value=1.5e-10 Score=138.35 Aligned_cols=131 Identities=12% Similarity=0.149 Sum_probs=69.9
Q ss_pred eEEEEcCCc---cchHHHHHhhcCCCceeccccccccccccccCC------CCC-CCCCCceeecCCceEEEEEeCCCCC
Q 006862 307 VDVIVTGTM---SQYIPILDYYSNGLPLVCTMYASSECYFGVNLN------PLC-KPSEVSYTLVPTMAYFEFLPVHRNN 376 (628)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~------~~~-~p~~~~~~l~~~~~~fEFip~~~~~ 376 (628)
++.+++|+. ....+.+++.+++++++ +.||.||+...+... +.. .+...+. ..|+. -++.++++..
T Consensus 346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~~~- 421 (979)
T 3tsy_A 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRNA-EMKIVDPDTG- 421 (979)
T ss_dssp CCEEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEEECTTSC-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCCc-EEEEEeCCCC-
Confidence 566676763 34567777888899999 999999985322111 000 0111122 22332 2444443321
Q ss_pred CCcccCCCCccccccccceeeeccccCCCceEEEEEee---ccceEe--------------eeeCCEEEEecccCCCCEE
Q 006862 377 GVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKNKAPQF 439 (628)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLyR--------------Yr~GDvv~v~gf~~~~P~~ 439 (628)
..|..|+.+||+|+. ..|+|+ |||||++++.. ...+
T Consensus 422 -----------------------~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~----dG~l 474 (979)
T 3tsy_A 422 -----------------------DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD----DDEL 474 (979)
T ss_dssp -----------------------CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCE
T ss_pred -----------------------CCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----CceE
Confidence 246789999999985 456653 99999999973 3579
Q ss_pred EEeeecCceEeccceeccHHHHHHHHHHH
Q 006862 440 NFICRKNVVLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 440 ~f~gR~~~~l~i~gek~~e~~v~~av~~a 468 (628)
.|+||.+++++++|+++...+|++++.+.
T Consensus 475 ~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 475 FIVDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp EEEEESCC---------------------
T ss_pred EEecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999999999763
No 31
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.15 E-value=8.3e-10 Score=121.58 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCceEEEEEee---ccceEe------------eeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHH
Q 006862 404 LGQEYELVVTT---YAGLYR------------YRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKN 467 (628)
Q Consensus 404 ~G~~YeLVvTt---~~GLyR------------Yr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~ 467 (628)
.|+.+||+|+. ..|+|. |||||++++.. ...+.|+||.+++++++|++++..+|++++.+
T Consensus 345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 345 KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 57789999975 456664 99999999973 45899999999999999999999999998864
No 32
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.14 E-value=1.2e-10 Score=130.75 Aligned_cols=130 Identities=17% Similarity=0.136 Sum_probs=62.9
Q ss_pred eEEEEcCCcc---chHHHHHhhcCCCceeccccccccccccccCCCC------CCCCCCceeecCCceEEEEEeCCCCCC
Q 006862 307 VDVIVTGTMS---QYIPILDYYSNGLPLVCTMYASSECYFGVNLNPL------CKPSEVSYTLVPTMAYFEFLPVHRNNG 377 (628)
Q Consensus 307 i~~~~~G~~~---~y~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~------~~p~~~~~~l~~~~~~fEFip~~~~~~ 377 (628)
++.+++|+.. ....++.+.+++++++ +.||.||+......... ..+...+.. +|+. -+..++.+
T Consensus 328 lr~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~~~-~v~i~d~~---- 400 (570)
T 4gr5_A 328 VRYAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVP-LAGK-RAYVLDDD---- 400 (570)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEE-CTTE-EEEEECTT----
T ss_pred ceEEEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCcccccee-eCCC-EEEEECCC----
Confidence 4556666643 3345566777789998 99999997432111000 000011221 2222 22333321
Q ss_pred CcccCCCCccccccccceeeeccccCCCceEEEEEee---ccceE----------------------eeeeCCEEEEecc
Q 006862 378 VANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTT---YAGLY----------------------RYRVGDVLRVAGF 432 (628)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YeLVvTt---~~GLy----------------------RYr~GDvv~v~gf 432 (628)
..++..|+.+||+|+. ..|+| -|||||++++..
T Consensus 401 ---------------------~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~- 458 (570)
T 4gr5_A 401 ---------------------LKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRA- 458 (570)
T ss_dssp ---------------------SCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT-
T ss_pred ---------------------CCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC-
Confidence 1246789999999976 44554 299999999973
Q ss_pred cCCCCEEEEeeecCceEeccceeccHHHHHHHHHHH
Q 006862 433 KNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 433 ~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a 468 (628)
...+.|+||.+++++++|++++..+|+++|.+.
T Consensus 459 ---dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 459 ---DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp ---TSCEEEEEC------------------------
T ss_pred ---CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 457999999999999999999999999999763
No 33
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.12 E-value=1.3e-09 Score=125.01 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=117.2
Q ss_pred eeEEEEcCCcc---chHHHHHhhcC--CCceeccccccccccccccCC-C-C---CCCCCCceeecCCceEEEEEeCCCC
Q 006862 306 YVDVIVTGTMS---QYIPILDYYSN--GLPLVCTMYASSECYFGVNLN-P-L---CKPSEVSYTLVPTMAYFEFLPVHRN 375 (628)
Q Consensus 306 ~i~~~~~G~~~---~y~~~l~~~~~--g~p~~~~~Y~aSEg~~gi~~~-~-~---~~p~~~~~~l~~~~~~fEFip~~~~ 375 (628)
.++.+++||.. ...+.+.+.+| +++++ +.||.||+...+... + . ..+...+.. +|+.. .+.++.++
T Consensus 385 sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p-~~g~~-v~i~d~~~- 460 (663)
T 1ry2_A 385 SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASFP-FFGID-AVVLDPNT- 460 (663)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCEE-CTTCC-EEEECSSS-
T ss_pred ceEEEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCccccC-cCCCe-EEEEcCCC-
Confidence 36677767743 23445555663 38998 999999984322111 1 0 011112221 22221 23333211
Q ss_pred CCCcccCCCCccccccccceeeeccccCC-CceEEEEEeec-----cceE----------------eeeeCCEEEEeccc
Q 006862 376 NGVANSISMPKSLNEKERQELVDLVDVKL-GQEYELVVTTY-----AGLY----------------RYRVGDVLRVAGFK 433 (628)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~l~eve~-G~~YeLVvTt~-----~GLy----------------RYr~GDvv~v~gf~ 433 (628)
.+ +|.. |+.+||+|+.. .|+| .|+|||++++..
T Consensus 461 ------------------g~-----~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~-- 515 (663)
T 1ry2_A 461 ------------------GE-----ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK-- 515 (663)
T ss_dssp ------------------TT-----CEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT--
T ss_pred ------------------CC-----cCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC--
Confidence 11 2445 88999999862 3343 299999999973
Q ss_pred CCCCEEEEeeecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEeEEEeecCCCCCc-eEEEEEEEeeCCCCC--C-
Q 006862 434 NKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPG-HYVLYWELSLNGTTP--I- 509 (628)
Q Consensus 434 ~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~-~Yvl~~El~~~~~~~--~- 509 (628)
...+.|+||.++++++.|+++...+|+++|.+. .+ |.+..++.......+ .-+.|+.+... ... .
T Consensus 516 --dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~~-~~~~~~~ 584 (663)
T 1ry2_A 516 --DGYIWILGRVDDVVNVSGHRLSTAEIEAAIIED------PI--VAECAVVGFNDDLTGQAVAAFVVLKNK-SSWSTAT 584 (663)
T ss_dssp --TCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS------TT--EEEEEEECCCCCTTSCCCEEEEEEC----------
T ss_pred --CCCEEEEeecCCEEEECCEEcCHHHHHHHHHhC------CC--cceEEEEEEecCCCCeEEEEEEEEcCC-Ccccccc
Confidence 357999999999999999999999999999642 22 556665532211122 23455665421 110 1
Q ss_pred Cc---chHHHHHHHHHHHhChhhHhcccCCCccCCeEEEEcC------CccHHHHHHHHHhcCCCC--CCCCCCcccCCH
Q 006862 510 PP---SVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVE------PGTFDKLMDYAISLGASI--NQYKTPRCVKFA 578 (628)
Q Consensus 510 ~~---~~l~~~~~~ld~~Ln~~Y~~~R~~~~~l~pl~v~~V~------~GtF~~l~~~~~~~G~~~--~Q~K~Pr~~~~~ 578 (628)
+. +..+++...+.+.|.. ...|-.|.+|. .|-.++ ..+.+=... .+++.+-.+.|+
T Consensus 585 ~~~~~~l~~~l~~~l~~~L~~----------~~~P~~i~~v~~lP~T~sGKi~R---~~L~~~~~~~~~~~~~~~~l~~p 651 (663)
T 1ry2_A 585 DDELQDIKKHLVFTVRKDIGP----------FAAPKLIILVDDLPKTRSGKIMR---RILRKILAGESDQLGDVSTLSNP 651 (663)
T ss_dssp ---CCSHHHHHHHHHHHHTCT----------TTSCSEEEECSCCCBCTTSCBCH---HHHHHSCC-------------CC
T ss_pred chhHHHHHHHHHHHHHHhCCC----------CcCCeEEEEcCCCCCCCccCchH---HHHHHHHcCCCCCCCCcccccCH
Confidence 11 2233444444444322 23344555553 233322 222221112 267777888899
Q ss_pred hHHHHHhh
Q 006862 579 PIIELLNS 586 (628)
Q Consensus 579 ~~~~~L~~ 586 (628)
+.++.+.+
T Consensus 652 ~~~~~~~~ 659 (663)
T 1ry2_A 652 GIVRHLID 659 (663)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988865
No 34
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.09 E-value=2.7e-09 Score=119.05 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=54.5
Q ss_pred ccCCCceEEEEEee---ccceEe-------------eeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHH
Q 006862 401 DVKLGQEYELVVTT---YAGLYR-------------YRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNA 464 (628)
Q Consensus 401 eve~G~~YeLVvTt---~~GLyR-------------Yr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~a 464 (628)
.|..|+.+||+|.. ..|+|+ |||||++++. ...+.|+||.+|+++++|+++...+|+++
T Consensus 405 ~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~-----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 479 (576)
T 3gqw_A 405 PVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLL-----DGYLYVTGRIKDLIIIRGRNIWPQDIEYI 479 (576)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEE-----TTEEEEEEETTTCEEETTEEECHHHHHHH
T ss_pred CCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEEE-----CCEEEEEecCcceEEECCEEECHHHHHHH
Confidence 46789999999986 456665 9999999884 35899999999999999999999999999
Q ss_pred HHHH
Q 006862 465 VKNA 468 (628)
Q Consensus 465 v~~a 468 (628)
+.+.
T Consensus 480 l~~~ 483 (576)
T 3gqw_A 480 AEQE 483 (576)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 9763
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.08 E-value=1.3e-09 Score=124.07 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=52.6
Q ss_pred cCCCceEEEEEee---ccceE---------------------eeeeCCEEEEecccCCCCEEEEeeecCceEeccceecc
Q 006862 402 VKLGQEYELVVTT---YAGLY---------------------RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTD 457 (628)
Q Consensus 402 ve~G~~YeLVvTt---~~GLy---------------------RYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~ 457 (628)
+..|+.+||+|.. ..|+| .|||||++++.. ...+.|+||.+++++++|+++.
T Consensus 355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~----dG~l~~~GR~dd~Ik~~G~ri~ 430 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE----QGRLRFIGRGDGQVKLNGYRLD 430 (620)
T ss_dssp CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT----TSCEEEEECSSSEEEETTEEEE
T ss_pred CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC----CCeEEEEccCCCEEEECCEEcC
Confidence 4679999999964 33443 399999999973 4579999999999999999999
Q ss_pred HHHHHHHHHH
Q 006862 458 EVELQNAVKN 467 (628)
Q Consensus 458 e~~v~~av~~ 467 (628)
..||++++.+
T Consensus 431 ~~eIE~~l~~ 440 (620)
T 4dg8_A 431 LPALEQRFRR 440 (620)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 36
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=98.99 E-value=7.5e-10 Score=117.53 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=49.3
Q ss_pred ccCCCceEEEEEeec-cceEeeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHHH
Q 006862 401 DVKLGQEYELVVTTY-AGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 401 eve~G~~YeLVvTt~-~GLyRYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a 468 (628)
++..++.+||++... ..-.-|||||++++.. . .+.|+||.+++++++|++++..+|++++...
T Consensus 209 ~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~---~--g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 209 QYGVDERGCLHISGAVTNGQTVQTNDLVEIHG---N--AFQWIGRADNVINSGGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp EEEECTTSEEEEESGGGTTCCEEEEEEEEECS---S--EEEEEEEGGGEEEETTEEEEHHHHHHHHHHH
T ss_pred EEEecCcCceEEecccccCcceecCCcccccc---C--ceEEcccccCeEEECCEEECHHHHHHHHHHh
Confidence 345567789998742 1112388999999984 2 3889999999999999999999999988654
No 37
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=98.92 E-value=6.8e-09 Score=115.78 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=48.1
Q ss_pred ceEEEEEee---ccceEe--------------eeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHHH
Q 006862 406 QEYELVVTT---YAGLYR--------------YRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNA 468 (628)
Q Consensus 406 ~~YeLVvTt---~~GLyR--------------Yr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a 468 (628)
+.+||+|+. ..|+|. |||||++++.. ...+.|+||.+++++++|++++..+|++++.+.
T Consensus 382 ~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 457 (541)
T 1v25_A 382 ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE----EGYVEIKDRLKDLIKSGGEWISSVDLENALMGH 457 (541)
T ss_dssp CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT----TCCEEEEEESSCEEEETTEEEEHHHHHCC----
T ss_pred cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC----CceEEEeecccceeeeCCEEECHHHHHHHHHhC
Confidence 579999986 456662 99999999973 357999999999999999999999999999763
No 38
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.90 E-value=1.7e-08 Score=124.23 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=53.6
Q ss_pred ccCCCceEEEEEee---ccceE--------------------eeeeCCEEEEecccCCCCEEEEeeecCceEeccceecc
Q 006862 401 DVKLGQEYELVVTT---YAGLY--------------------RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTD 457 (628)
Q Consensus 401 eve~G~~YeLVvTt---~~GLy--------------------RYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~ 457 (628)
.|..|+.+||+|.. ..|+| .|||||+++... ...++|+||.+++++++|+++.
T Consensus 797 ~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~GR~d~qvki~G~rie 872 (1304)
T 2vsq_A 797 LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DGTIEYAGRIDDQVKIRGHRIE 872 (1304)
T ss_dssp BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TSCEEEEEEGGGEEEETTEEEE
T ss_pred CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CCeEEEEcCCCCEEEECCEeeC
Confidence 46689999999975 23432 499999999873 4579999999999999999999
Q ss_pred HHHHHHHHHH
Q 006862 458 EVELQNAVKN 467 (628)
Q Consensus 458 e~~v~~av~~ 467 (628)
..||+.++.+
T Consensus 873 ~~eIE~~l~~ 882 (1304)
T 2vsq_A 873 LEEIEKQLQE 882 (1304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=97.93 E-value=2.6e-05 Score=84.72 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=16.5
Q ss_pred CcceeecccccCCCcccccccCHHHHHH
Q 006862 100 PISEFLTSSGTSGGERKLMPTIEEELER 127 (628)
Q Consensus 100 pi~~f~~TSGTT~G~~K~IP~t~~~l~~ 127 (628)
.+.+...||||| |+||-+..|...+..
T Consensus 184 d~a~i~~TSGTT-G~PKgV~~th~~l~~ 210 (480)
T 3t5a_A 184 STAYLQYTSGST-RTPAGVVMSHQNVRV 210 (480)
T ss_dssp SEEEEECC-------CCCEEEEHHHHHH
T ss_pred ceEEEEecCCCC-CCCcEEEEeHHHHHH
Confidence 345778899999 899999999987643
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=96.34 E-value=0.0091 Score=51.75 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=56.5
Q ss_pred ecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEe-EEEeecCCCCCceEEEEEEEeeCCCCCCCcchHHHHHHHHH
Q 006862 444 RKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSE-YTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIE 522 (628)
Q Consensus 444 R~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~e-ft~~~d~~~~p~~Yvl~~El~~~~~~~~~~~~l~~~~~~ld 522 (628)
|.+|||+++|.++++.+|+++|.+. .+ |.+ +.+..+.......-.+++++.. ....+...++.++..|.
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~--v~~~~vv~v~~~~~~~~~~~~V~~~~--~~~~~~~~~~~l~~~i~ 71 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KE--LGSDYLITLETAESNDEMTVEVELSQ--LFTDDYGRLQALTREIT 71 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TT--EEEEEEEEEEEETTEEEEEEEEEECT--TCCCCHHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CC--cccceEEEEeccccceeEEEEEEEee--ccccccchhhhhHHHHH
Confidence 8899999999999999999999653 23 222 3332222112223446666642 22334455666666666
Q ss_pred HHhChhhHhcccCCCccCCeEEEEcCCccHHH
Q 006862 523 ESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDK 554 (628)
Q Consensus 523 ~~Ln~~Y~~~R~~~~~l~pl~v~~V~~GtF~~ 554 (628)
+.+... -| + ++.|.+|++|++.+
T Consensus 72 ~~l~~~-------~g-v-~~~v~~v~~~~lPr 94 (109)
T 3lax_A 72 RQLKDE-------IL-V-TPRVKLVPKGALPK 94 (109)
T ss_dssp HHHHHH-------HS-S-CCEEEEECTTCSCC
T ss_pred HHHHHH-------hC-C-ccceEEEcCCeecC
Confidence 665331 11 3 45799999998873
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=95.97 E-value=0.019 Score=49.93 Aligned_cols=94 Identities=12% Similarity=0.123 Sum_probs=55.4
Q ss_pred eecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEeEEEeecCCCCCceEEEEEEEeeCCCCCCCcchHHHHHHHHH
Q 006862 443 CRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIE 522 (628)
Q Consensus 443 gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~~Yvl~~El~~~~~~~~~~~~l~~~~~~ld 522 (628)
||.+|||++.|.++++.+|+.++.+. . ++. ..|.+..+.....-.-++++|+ . +....+....++++..|.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~-~~~~~~~~~~~~l~~~i~ 71 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-S-QLFTDDYGRLQALTREIT 71 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-C-TTCCCCHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-c-CccccchhHHHHHHHHHH
Confidence 79999999999999999999999763 2 211 1344332221111234577777 2 211111223445555555
Q ss_pred HHhChhhHhcccCCCccCCeEEEEcCCccHHH
Q 006862 523 ESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDK 554 (628)
Q Consensus 523 ~~Ln~~Y~~~R~~~~~l~pl~v~~V~~GtF~~ 554 (628)
+.+...+ .+. +.|.+|++|++.+
T Consensus 72 ~~l~~~~--------~~~-~~v~~v~~~~lPr 94 (109)
T 3gxs_A 72 RQLKDEI--------LVT-PRVKLVPKGALPK 94 (109)
T ss_dssp HHHHHHH--------SSC-CEEEEECTTCSCC
T ss_pred HHHHHhh--------CCc-eEEEEECCCCccC
Confidence 5553311 243 4899999998774
No 42
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=37.85 E-value=83 Score=25.23 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=37.5
Q ss_pred eeccHHHHHHHHHHHHhhcCCC-CceEEeEEEeecCCCCCceEEEEEEEee
Q 006862 454 DKTDEVELQNAVKNAVNHLVPF-DAAVSEYTSYADTTTVPGHYVLYWELSL 503 (628)
Q Consensus 454 ek~~e~~v~~av~~a~~~l~~~-g~~l~eft~~~d~~~~p~~Yvl~~El~~ 503 (628)
.+-.|+.+++||.+|.+.|+.- +++|.+..+..+. +.-.||.+-+.+.|
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~F 64 (72)
T 3onr_A 15 PTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEVSF 64 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 3566899999999999987533 4678888887664 35569998888877
No 43
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=34.23 E-value=96 Score=24.58 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=36.1
Q ss_pred eeccHHHHHHHHHHHHhhcCCC-CceEEeEEEeecCCCCCceEEEEEEEee
Q 006862 454 DKTDEVELQNAVKNAVNHLVPF-DAAVSEYTSYADTTTVPGHYVLYWELSL 503 (628)
Q Consensus 454 ek~~e~~v~~av~~a~~~l~~~-g~~l~eft~~~d~~~~p~~Yvl~~El~~ 503 (628)
.+-.|+.+++||.+|.+.|+.- +++|.+.....+.. .-.||.+-+++.|
T Consensus 13 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lKV~F 62 (68)
T 2cc6_A 13 EESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGAV-EERTYQTEVQVAF 62 (68)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTTS-SSCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEEE
Confidence 4566899999999999987422 45777777776543 4469998888876
No 44
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=24.60 E-value=96 Score=24.66 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=35.3
Q ss_pred eeccHHHHHHHHHHHHhhcCCC-CceEEeEEEeecCCCCCceEEEEEEEee
Q 006862 454 DKTDEVELQNAVKNAVNHLVPF-DAAVSEYTSYADTTTVPGHYVLYWELSL 503 (628)
Q Consensus 454 ek~~e~~v~~av~~a~~~l~~~-g~~l~eft~~~d~~~~p~~Yvl~~El~~ 503 (628)
.+=.|+.+++||.+|.+.|+.- +++|.+.....+.. .-.||.+-+++.|
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lkV~F 64 (69)
T 2ux9_A 15 EEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGEA-GVKEYQVVLEVGF 64 (69)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEEE
Confidence 4456899999999999987422 45777777766542 4469998888766
No 45
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=24.03 E-value=98 Score=24.80 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=35.5
Q ss_pred eeccHHHHHHHHHHHHhhcCCC-CceEEeEEEeecCCCCCceEEEEEEEee
Q 006862 454 DKTDEVELQNAVKNAVNHLVPF-DAAVSEYTSYADTTTVPGHYVLYWELSL 503 (628)
Q Consensus 454 ek~~e~~v~~av~~a~~~l~~~-g~~l~eft~~~d~~~~p~~Yvl~~El~~ 503 (628)
.+=.|+.+++||.+|.+.|+.- +++|.+.....+. +.-.||.+-+++.|
T Consensus 16 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~d-gki~~yqV~lKV~F 65 (72)
T 2vxa_A 16 PNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEG-GRVNHWQVTVKVGF 65 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 4466899999999999987422 4577777776653 34469998888776
No 46
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=23.75 E-value=1e+02 Score=24.51 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=35.2
Q ss_pred eeccHHHHHHHHHHHHhhcCCC-CceEEeEEEeecCCCCCceEEEEEEEee
Q 006862 454 DKTDEVELQNAVKNAVNHLVPF-DAAVSEYTSYADTTTVPGHYVLYWELSL 503 (628)
Q Consensus 454 ek~~e~~v~~av~~a~~~l~~~-g~~l~eft~~~d~~~~p~~Yvl~~El~~ 503 (628)
.+=.|+.+++||.+|.+.|+.- +++|.+.....+.. .-.||.+-+++.|
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~dg-kv~~yqv~lkv~F 64 (69)
T 2yiz_A 15 PDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVDG-AVAHFQVTMKVGF 64 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeCC-cEEEEEEEEEEEE
Confidence 3456889999999999987422 45777777766542 4469998888766
No 47
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=22.60 E-value=73 Score=29.33 Aligned_cols=44 Identities=23% Similarity=0.517 Sum_probs=30.5
Q ss_pred CChHHHhhCCC-----CCCChhhHh---hhCCCCChhhhHHHHHHHHcCCCCCccc
Q 006862 50 HVEYLQRNGLN-----GHTDRESFK---KTMPVITYEDIQADINRIANGDTSPILC 97 (628)
Q Consensus 50 ~T~ygr~~gf~-----~i~~~edF~---~~vPl~tYedl~pyIeRi~~Ge~~~lL~ 97 (628)
|.+.+|+.|+. +..+.+|.+ +.|| ..+++|++.|+.|..+++.|
T Consensus 101 D~eVLK~mgl~~gle~g~cs~e~l~~~ks~vP----~~l~~yv~~~a~g~~~~~~~ 152 (155)
T 2aze_A 101 DIEVLKRMGMACGLESGSCSAEDLKMARSLVP----KALEPYVTEMAQGTVGGVFI 152 (155)
T ss_dssp HHHHHHHTTTTTTGGGTCCCHHHHHHHHHTSC----GGGHHHHHHHHHTTTCSCC-
T ss_pred hHHHHHHHHHHhCCCCCCCCHHHHHHHHHhCC----hhhhhhHHHHhcCCCCCcee
Confidence 44566776664 345677775 7777 45999999999998655443
No 48
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=20.67 E-value=63 Score=20.49 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.3
Q ss_pred CCCCChhhhHHHHHHHHc
Q 006862 72 MPVITYEDIQADINRIAN 89 (628)
Q Consensus 72 vPl~tYedl~pyIeRi~~ 89 (628)
||+.||.|++.--|+-.+
T Consensus 2 vPiFt~selqr~qEkErN 19 (26)
T 1lbj_A 2 VPIFTYGELQRMQEKERN 19 (26)
T ss_dssp CCTTCHHHHHHHHHHHHH
T ss_pred CceeeHHHHHHHHHHHhc
Confidence 899999999776666554
Done!