Query 006863
Match_columns 628
No_of_seqs 309 out of 1845
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 15:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 1E-143 3E-148 1236.9 60.2 616 2-621 144-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 8E-131 2E-135 1135.2 58.4 571 7-618 149-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 4.1E-55 8.9E-60 468.4 20.6 254 8-291 113-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 1.4E-49 3E-54 415.2 14.0 193 7-212 101-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 3.6E-41 7.8E-46 354.4 17.7 186 8-216 114-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 1.1E-39 2.5E-44 327.8 14.4 215 253-483 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 6.9E-21 1.5E-25 155.6 6.6 69 545-614 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.4 0.012 2.7E-07 50.4 7.2 61 528-611 20-82 (101)
9 PF12690 BsuPI: Intracellular 95.4 0.11 2.4E-06 43.5 8.6 67 529-609 2-81 (82)
10 PF10633 NPCBM_assoc: NPCBM-as 94.5 0.18 3.9E-06 41.6 7.4 65 528-611 6-74 (78)
11 PF14874 PapD-like: Flagellar- 91.3 1.6 3.5E-05 37.7 9.1 61 528-594 21-81 (102)
12 PRK13203 ureB urease subunit b 89.9 0.55 1.2E-05 40.5 4.6 51 529-583 20-82 (102)
13 cd00407 Urease_beta Urease bet 89.6 0.61 1.3E-05 40.2 4.7 51 529-583 20-82 (101)
14 TIGR00192 urease_beta urease, 86.8 1.2 2.6E-05 38.3 4.7 51 529-583 20-82 (101)
15 PRK13201 ureB urease subunit b 86.7 1.1 2.4E-05 40.4 4.6 51 529-583 20-82 (136)
16 PRK13202 ureB urease subunit b 86.6 1.3 2.8E-05 38.3 4.8 50 530-583 22-83 (104)
17 PF00699 Urease_beta: Urease b 85.7 1.1 2.5E-05 38.4 4.0 52 528-583 18-81 (100)
18 PRK13205 ureB urease subunit b 85.1 1.4 3.1E-05 40.6 4.6 51 529-583 20-82 (162)
19 PF05506 DUF756: Domain of unk 82.1 15 0.00032 31.0 9.6 46 530-586 21-67 (89)
20 COG0486 ThdF Predicted GTPase 81.1 29 0.00062 38.4 13.4 96 102-216 60-171 (454)
21 PRK13198 ureB urease subunit b 80.8 2.7 5.9E-05 38.8 4.7 51 529-583 48-110 (158)
22 COG0832 UreB Urea amidohydrola 80.5 2.6 5.7E-05 36.1 4.2 51 529-583 20-82 (106)
23 PRK13204 ureB urease subunit b 80.4 3 6.5E-05 38.6 4.8 51 529-583 43-105 (159)
24 PF13473 Cupredoxin_1: Cupredo 79.8 5.4 0.00012 34.7 6.2 50 530-611 44-93 (104)
25 PF07610 DUF1573: Protein of u 78.8 4.6 9.9E-05 29.6 4.6 43 532-583 1-44 (45)
26 PRK13986 urease subunit alpha; 75.5 4 8.8E-05 40.1 4.4 51 529-583 125-187 (225)
27 COG1470 Predicted membrane pro 75.2 11 0.00023 41.5 7.9 81 528-624 398-483 (513)
28 PF00345 PapD_N: Pili and flag 75.2 7.7 0.00017 34.7 6.0 54 530-586 17-73 (122)
29 PF07385 DUF1498: Protein of u 74.9 4.4 9.6E-05 40.1 4.6 59 534-598 111-180 (225)
30 PRK13192 bifunctional urease s 73.6 5.3 0.00011 38.9 4.6 51 529-583 129-191 (208)
31 PF04744 Monooxygenase_B: Mono 71.0 9 0.0002 40.8 6.0 54 528-585 264-334 (381)
32 PF06030 DUF916: Bacterial pro 71.0 16 0.00034 33.0 6.9 57 528-586 28-103 (121)
33 COG1470 Predicted membrane pro 69.8 5 0.00011 43.9 4.0 83 528-624 285-375 (513)
34 PF00927 Transglut_C: Transglu 65.4 11 0.00024 32.8 4.7 58 528-586 16-76 (107)
35 PF14796 AP3B1_C: Clathrin-ada 61.7 22 0.00048 33.1 6.1 54 528-586 86-140 (145)
36 PF09624 DUF2393: Protein of u 59.0 26 0.00057 32.5 6.3 59 528-586 63-133 (149)
37 TIGR01759 MalateDH-SF1 malate 56.4 9.1 0.0002 40.7 3.0 59 331-393 74-134 (323)
38 PF14016 DUF4232: Protein of u 56.1 33 0.00072 31.1 6.3 57 528-586 19-82 (131)
39 COG1160 Predicted GTPases [Gen 55.9 32 0.0007 37.9 7.0 47 328-387 75-121 (444)
40 TIGR02695 azurin azurin. Azuri 51.3 35 0.00076 30.9 5.3 53 530-586 26-99 (125)
41 cd03708 GTPBP_III Domain III o 50.2 1E+02 0.0022 25.4 7.9 76 528-611 5-82 (87)
42 PF06510 DUF1102: Protein of u 48.4 95 0.0021 28.9 7.7 64 518-586 59-124 (146)
43 TIGR01756 LDH_protist lactate 48.0 12 0.00027 39.5 2.3 56 332-393 56-115 (313)
44 TIGR03079 CH4_NH3mon_ox_B meth 45.5 49 0.0011 35.4 6.1 54 528-586 283-354 (399)
45 cd00938 HisRS_RNA HisRS_RNA bi 44.9 47 0.001 24.5 4.2 31 187-217 12-42 (45)
46 PRK05442 malate dehydrogenase; 44.4 19 0.00042 38.2 3.2 56 332-393 76-135 (326)
47 cd00704 MDH Malate dehydrogena 44.0 18 0.00039 38.4 2.9 57 331-393 71-131 (323)
48 PLN02303 urease 43.9 27 0.0006 41.4 4.5 50 530-583 151-212 (837)
49 PF06858 NOG1: Nucleolar GTP-b 43.4 67 0.0015 25.1 5.1 24 363-386 31-55 (58)
50 PLN00135 malate dehydrogenase 43.3 19 0.00041 38.0 2.9 56 332-393 54-113 (309)
51 cd01338 MDH_choloroplast_like 41.2 22 0.00047 37.8 2.9 57 331-393 73-133 (322)
52 PF05753 TRAP_beta: Translocon 40.8 1.3E+02 0.0029 29.1 8.1 80 528-614 39-127 (181)
53 PRK13533 7-cyano-7-deazaguanin 39.6 29 0.00063 39.0 3.7 48 133-181 74-121 (487)
54 PRK09918 putative fimbrial cha 39.1 97 0.0021 31.2 7.1 47 530-585 41-93 (230)
55 TIGR03096 nitroso_cyanin nitro 39.0 81 0.0018 29.1 5.9 16 571-586 95-110 (135)
56 PF06205 GT36_AF: Glycosyltran 38.3 22 0.00048 30.2 2.0 26 559-586 59-84 (90)
57 cd01336 MDH_cytoplasmic_cytoso 38.0 26 0.00056 37.3 2.9 56 332-393 74-133 (325)
58 COG0039 Mdh Malate/lactate deh 36.2 30 0.00065 36.5 3.0 58 332-394 65-124 (313)
59 TIGR01758 MDH_euk_cyt malate d 36.1 28 0.0006 37.1 2.7 56 332-393 71-130 (324)
60 PF10087 DUF2325: Uncharacteri 36.1 1E+02 0.0022 26.3 5.8 40 330-384 42-81 (97)
61 TIGR01757 Malate-DH_plant mala 35.5 22 0.00047 38.8 1.8 56 332-393 116-175 (387)
62 PRK13211 N-acetylglucosamine-b 35.4 1.2E+02 0.0026 34.0 7.7 48 528-586 328-375 (478)
63 PF07233 DUF1425: Protein of u 35.0 1.6E+02 0.0034 25.2 6.8 53 528-586 25-82 (94)
64 PF06280 DUF1034: Fn3-like dom 34.1 86 0.0019 27.4 5.2 59 528-586 9-80 (112)
65 PRK05086 malate dehydrogenase; 33.1 32 0.00068 36.4 2.6 56 332-393 65-123 (312)
66 cd05290 LDH_3 A subgroup of L- 32.8 39 0.00084 35.6 3.2 57 332-393 64-124 (307)
67 PF09851 SHOCT: Short C-termin 32.3 77 0.0017 21.2 3.4 25 186-210 6-30 (31)
68 cd06557 KPHMT-like Ketopantoat 32.3 5.2E+02 0.011 26.4 11.2 17 136-152 29-45 (254)
69 PF00056 Ldh_1_N: lactate/mala 31.6 10 0.00022 35.0 -1.2 54 333-393 66-123 (141)
70 cd01857 HSR1_MMR1 HSR1/MMR1. 31.5 1.1E+02 0.0023 27.8 5.6 18 328-345 3-20 (141)
71 PF08530 PepX_C: X-Pro dipepti 30.9 1.1E+02 0.0024 30.1 6.0 56 528-586 97-162 (218)
72 PRK13555 azoreductase; Provisi 30.0 1.1E+02 0.0024 30.3 5.7 37 328-375 81-117 (208)
73 PRK13556 azoreductase; Provisi 29.8 1.4E+02 0.003 29.3 6.4 37 328-375 81-117 (208)
74 COG1361 S-layer domain [Cell e 29.7 1.3E+02 0.0029 33.8 7.1 58 528-586 168-226 (500)
75 cd01337 MDH_glyoxysomal_mitoch 29.3 41 0.0009 35.5 2.7 55 332-393 64-122 (310)
76 cd00300 LDH_like L-lactate deh 29.1 36 0.00078 35.7 2.2 57 332-393 62-120 (300)
77 COG1182 AcpD Acyl carrier prot 29.1 1.5E+02 0.0032 29.3 6.2 51 329-393 80-130 (202)
78 TIGR00237 xseA exodeoxyribonuc 29.0 2.2E+02 0.0048 31.6 8.4 56 327-394 175-233 (432)
79 PRK00286 xseA exodeoxyribonucl 29.0 2E+02 0.0044 31.8 8.2 57 326-394 180-238 (438)
80 PRK15249 fimbrial chaperone pr 28.8 1.2E+02 0.0026 31.0 5.9 54 530-585 45-103 (253)
81 TIGR01451 B_ant_repeat conserv 28.7 75 0.0016 24.0 3.3 22 528-550 13-34 (53)
82 PLN02602 lactate dehydrogenase 28.5 38 0.00083 36.4 2.3 54 333-393 102-159 (350)
83 PF07495 Y_Y_Y: Y_Y_Y domain; 28.5 91 0.002 24.0 4.0 11 601-611 36-46 (66)
84 PF01345 DUF11: Domain of unkn 28.3 67 0.0014 25.9 3.2 18 528-545 42-59 (76)
85 PLN00112 malate dehydrogenase 28.0 33 0.00072 38.1 1.8 56 332-393 172-231 (444)
86 PF11906 DUF3426: Protein of u 27.9 2.4E+02 0.0051 25.9 7.3 59 528-586 69-136 (149)
87 PRK09926 putative chaperone pr 27.6 1.3E+02 0.0029 30.5 6.0 55 530-586 42-100 (246)
88 PRK15295 fimbrial assembly cha 27.3 2.1E+02 0.0045 28.7 7.2 55 530-586 36-91 (226)
89 cd05294 LDH-like_MDH_nadp A la 27.3 56 0.0012 34.4 3.3 56 333-393 69-126 (309)
90 TIGR01772 MDH_euk_gproteo mala 27.1 59 0.0013 34.4 3.4 55 332-393 63-121 (312)
91 PF00009 GTP_EFTU: Elongation 26.3 2.4E+02 0.0051 26.8 7.3 48 327-387 84-131 (188)
92 TIGR03352 VI_chp_3 type VI sec 26.0 1.5E+02 0.0032 27.6 5.5 25 562-586 80-104 (146)
93 COG4454 Uncharacterized copper 25.9 75 0.0016 29.9 3.4 17 570-586 116-132 (158)
94 TIGR01763 MalateDH_bact malate 25.7 46 0.001 35.0 2.3 53 334-393 67-123 (305)
95 PRK15188 fimbrial chaperone pr 25.7 2.3E+02 0.0049 28.6 7.1 53 530-586 44-98 (228)
96 PF09544 DUF2381: Protein of u 25.7 2.9E+02 0.0063 28.9 8.1 57 528-586 203-260 (289)
97 PF02450 LCAT: Lecithin:choles 25.5 76 0.0017 34.6 4.0 61 367-427 107-175 (389)
98 PF11611 DUF4352: Domain of un 25.4 83 0.0018 27.6 3.6 59 528-586 37-101 (123)
99 PRK10528 multifunctional acyl- 25.4 2.8E+02 0.006 26.6 7.6 17 262-278 2-18 (191)
100 COG2003 RadC DNA repair protei 24.6 59 0.0013 32.5 2.6 51 99-150 158-209 (224)
101 PRK15224 pili assembly chapero 24.2 2.4E+02 0.0051 28.7 6.9 50 530-586 45-98 (237)
102 PRK15299 fimbrial chaperone pr 24.0 1.9E+02 0.004 29.1 6.2 55 530-586 39-95 (227)
103 TIGR02836 spore_IV_A stage IV 24.0 2.3E+02 0.005 31.5 7.1 54 333-392 140-194 (492)
104 TIGR01771 L-LDH-NAD L-lactate 23.7 47 0.001 34.9 1.9 55 332-393 60-118 (299)
105 TIGR03566 FMN_reduc_MsuE FMN r 23.5 1.6E+02 0.0035 27.9 5.4 52 326-388 58-111 (174)
106 PF13653 GDPD_2: Glycerophosph 23.0 73 0.0016 21.4 2.0 17 98-115 12-28 (30)
107 PF00703 Glyco_hydro_2: Glycos 22.4 3.1E+02 0.0068 22.8 6.6 63 528-595 19-81 (110)
108 PRK13534 7-cyano-7-deazaguanin 22.2 1E+02 0.0022 36.0 4.4 49 132-181 72-120 (639)
109 PRK10378 inactive ferrous ion 22.0 2.5E+02 0.0054 30.5 6.9 44 531-586 53-96 (375)
110 PF11614 FixG_C: IG-like fold 21.9 2.2E+02 0.0048 25.0 5.7 50 530-586 34-84 (118)
111 PTZ00325 malate dehydrogenase; 21.8 61 0.0013 34.4 2.3 57 331-393 71-130 (321)
112 PRK00170 azoreductase; Reviewe 21.6 1.8E+02 0.0038 28.0 5.4 38 326-374 76-113 (201)
113 PF01926 MMR_HSR1: 50S ribosom 21.3 1.6E+02 0.0035 25.4 4.6 45 328-386 71-115 (116)
114 PF09373 PMBR: Pseudomurein-bi 21.2 1.1E+02 0.0024 20.7 2.7 25 194-218 2-26 (33)
115 PF06165 Glyco_transf_36: Glyc 21.0 37 0.00081 29.9 0.4 17 472-488 31-47 (110)
116 PF10662 PduV-EutP: Ethanolami 20.8 5.9E+02 0.013 23.6 8.3 20 327-346 54-73 (143)
117 PRK15218 fimbrial chaperone pr 20.6 3.3E+02 0.0071 27.4 7.1 55 530-586 35-93 (226)
118 PRK15211 fimbrial chaperone pr 20.2 3.3E+02 0.0071 27.4 7.0 49 530-586 39-93 (229)
119 PF13157 DUF3992: Protein of u 20.2 4.3E+02 0.0094 22.6 6.6 67 528-609 25-91 (92)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=1.4e-143 Score=1236.86 Aligned_cols=616 Identities=49% Similarity=0.963 Sum_probs=534.7
Q ss_pred CCCCcccceeeCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCC---------CCCCceEEeecccccccCC
Q 006863 2 YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT---------GSRLKVAACCKHYTAYDLD 72 (628)
Q Consensus 2 ~~~~~~Gi~~~~P~~di~r~p~~gr~~e~fgEDP~l~~~~a~a~v~GlQ~~~---------~~~~~v~a~~KHF~g~g~~ 72 (628)
||.+.+|+++|+|++||+|||||||++|||||||+|+++|+.|||+|||+.+ .++.+|+||+||||||+++
T Consensus 144 g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e 223 (779)
T PLN03080 144 YNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLE 223 (779)
T ss_pred ccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCcc
Confidence 4555568998999999999999999999999999999999999999999841 1334599999999999998
Q ss_pred CCCCCCceeecccCCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHHhhcCCCcEEEcchhhhh
Q 006863 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG 152 (628)
Q Consensus 73 ~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~ 152 (628)
.+.+.+|...++.+++++|+|+||+||+++|++|.+.+||||||++||+|||+|++||++ ||+||||+|+|||||++|.
T Consensus 224 ~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~ 302 (779)
T PLN03080 224 KWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVA 302 (779)
T ss_pred ccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHH
Confidence 777778888889999999999999999999999988899999999999999999999986 9999999999999999999
Q ss_pred hhhccccccCChHHHHHHHHHcCCCcCCchhhHHHHHHHHHCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCCCCCC
Q 006863 153 VLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG 232 (628)
Q Consensus 153 ~~~~~~~~~~~~~~a~~~al~AG~D~~~~~~~~~~l~~av~~G~i~~~~ld~av~RIL~~k~~~Glf~~~p~~~~~~~~~ 232 (628)
.+...|++..+.++++++||+||+||+|+.++.+.|.+||++|+|+|++||+||+|||++|+++|+|+.+|...++.++.
T Consensus 303 ~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~ 382 (779)
T PLN03080 303 TIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLG 382 (779)
T ss_pred HhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccc
Confidence 99988888778999999999999999998877889999999999999999999999999999999999444333444444
Q ss_pred CCCCCCHHHHHHHHHHHhhcceeccCCCCCCCCcCCCCceEEEEccCCccccccccccccCCCCcCCHHHHHHHhh-cce
Q 006863 233 PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA-KTI 311 (628)
Q Consensus 233 ~~~v~~~~~~~la~~~A~eSivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~g~~~~~~t~~e~l~~~~-~~~ 311 (628)
...+++++|+++|+|+|++|||||||++++|||++.+.++|+||||+|+....++|+|++.+++.++++++|+++. .+.
T Consensus 383 ~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~ 462 (779)
T PLN03080 383 PNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTS 462 (779)
T ss_pred ccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcce
Confidence 5678899999999999999999999999999998765579999999999988888889888888999999999975 467
Q ss_pred eecccCccccCCcccHHHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCcee
Q 006863 312 HQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV 391 (628)
Q Consensus 312 y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~g~P~ 391 (628)
|..||....+.+...+++|+++|++||+|||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|+
T Consensus 463 y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv 542 (779)
T PLN03080 463 FAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPV 542 (779)
T ss_pred eccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCcee
Confidence 88888655444456788999999999999999999988999999999999999999999999986777899999999999
Q ss_pred eecccccCCCccEEEEecCCCchhHHHHHHHHhCCCCCCeecCcccCcccccCCCCCccccccc--cCCCCCCcccccCC
Q 006863 392 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKG 469 (628)
Q Consensus 392 ~l~~~~~~~~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~ 469 (628)
+|+|+.+.++++|||++|||||++|+|+||||||++|||||||+||||+++ +++|++++++++ ..+|++++||||+.
T Consensus 543 ~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~ 621 (779)
T PLN03080 543 DVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTG 621 (779)
T ss_pred eccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCC
Confidence 999987667899999999999999999999999999999999999999988 789998887754 35688999999999
Q ss_pred CcccccCcCCCCCCceeCCCccCCCccccccccccccccccc--c-c---ccccccc-cCCCCCceEEEEEEEEeCCCCC
Q 006863 470 PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTI--S-S---NAIRVAH-TNCNDAMSLGLHVDIKNTGDMA 542 (628)
Q Consensus 470 ~~~ypFG~GLSYTtF~~s~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~~~-~~~~~~~~~~vsv~VtNtG~~~ 542 (628)
+|+||||||||||||+||+++++...++........ ..... . . ..+.+.+ ..|+.. .++|+|+|||||+++
T Consensus 622 ~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~ 699 (779)
T PLN03080 622 DVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDS-ISRKPLLQRRDELDYVQIEDIASCESL-RFNVHISVSNVGEMD 699 (779)
T ss_pred CcceeccCCCccceeEeccccccccccccccccccc-cccccccccccccccccccccccCCCc-eEEEEEEEEECCccc
Confidence 999999999999999999987543111110000000 00000 0 0 0000000 112222 489999999999999
Q ss_pred cceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEEEEEeCCCCeeEEEE
Q 006863 543 GTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 621 (628)
Q Consensus 543 G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~ 621 (628)
|+||||||+++|.+. .+|+|||+||+||+|+||||++|+|+|+++++|++||++++|++++|+|+|+||+++|++++++
T Consensus 700 G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 700 GSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred CcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 999999999999875 8999999999999999999999999999657999999999999999999999999999998863
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=8.3e-131 Score=1135.18 Aligned_cols=571 Identities=31% Similarity=0.500 Sum_probs=490.3
Q ss_pred cccee-eCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCCC-CCCceEEeecccccccCCCCCCCCceeecc
Q 006863 7 AGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTG-SRLKVAACCKHYTAYDLDNWNGVDRYHFNA 84 (628)
Q Consensus 7 ~Gi~~-~~P~~di~r~p~~gr~~e~fgEDP~l~~~~a~a~v~GlQ~~~~-~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~ 84 (628)
.|+|+ |+|++||+|||+|||++|||||||+++++|+.|+|+|||+++. +..||++|+|||||||... .+|+...+
T Consensus 149 ~Gin~~laPv~Dv~r~p~~gr~~rsfgeDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~---~~~~~~~~ 225 (765)
T PRK15098 149 DGLNMTWAPMVDISRDPRWGRASEGFGEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVE---GGRDYNTV 225 (765)
T ss_pred cCCCEEeeCcccccCCCCccccccCcCCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCcc---cCccCccC
Confidence 39999 9999999999999999999999999999999999999998631 2337999999999999432 24555567
Q ss_pred cCCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHHhhcCCCcEEEcchhhhhhhhccccccCCh
Q 006863 85 RVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTP 164 (628)
Q Consensus 85 ~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~ 164 (628)
.+++++|+|+||+||+++|++| +.+||||||.+||+|||.|+++|+++||+||||+|+|||||++|..+.. |++..+.
T Consensus 226 ~~~~~~l~e~~l~PF~~ai~ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~ 303 (765)
T PRK15098 226 DMSPQRMFNDYLPPYKAGLDAG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADP 303 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCH
Confidence 8899999999999999999877 8999999999999999999999999999999999999999999998874 6766788
Q ss_pred HHHHHHHHHcCCCcCCchh-hHHHHHHHHHCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCC--C-CCCCCCCCCHH
Q 006863 165 EEAAADAIKAGLDLDCGPF-LAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPF--G-NLGPRDVCTPA 240 (628)
Q Consensus 165 ~~a~~~al~AG~D~~~~~~-~~~~l~~av~~G~i~~~~ld~av~RIL~~k~~~Glf~~~p~~~~~--~-~~~~~~v~~~~ 240 (628)
++++++||+||+||+|.+. +.+.|.+||++|+|++++||+||+|||++|+++|+|+ +|+...- . ......+.+++
T Consensus 304 ~ea~~~Al~AG~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~~ 382 (765)
T PRK15098 304 EDAVRLALKSGIDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESRL 382 (765)
T ss_pred HHHHHHHHHcCCCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccccCCHH
Confidence 9999999999999999654 4467999999999999999999999999999999999 6653210 0 00112345789
Q ss_pred HHHHHHHHHhhcceeccCCCCCCCCcCCCCceEEEEccCCccccccccccc--cCCCCcCCHHHHHHHhh----cceeec
Q 006863 241 HQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA--GVACGYTTPLQGISRYA----KTIHQA 314 (628)
Q Consensus 241 ~~~la~~~A~eSivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~--g~~~~~~t~~e~l~~~~----~~~y~~ 314 (628)
|+++++++|++|||||||++++|||++. +||+||||+++....+.|+|+ +.+.+.++++++|+++. .+.|..
T Consensus 383 ~~~~a~~~a~~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~ 460 (765)
T PRK15098 383 HRKEAREVARESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAK 460 (765)
T ss_pred HHHHHHHHHHhcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEec
Confidence 9999999999999999999999999753 699999999988765667664 55677899999999874 356888
Q ss_pred ccCcccc-------------------CCcccHHHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHH
Q 006863 315 GCFGVAC-------------------NGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 375 (628)
Q Consensus 315 g~~~~~~-------------------~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~ 375 (628)
||..... .....+++|+++|+.||++||++|.+...++|+.||.+|.||+.|.+||++|++
T Consensus 461 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~ 540 (765)
T PRK15098 461 GANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKA 540 (765)
T ss_pred ccccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHH
Confidence 8742110 112457889999999999999999988889999999999999999999999986
Q ss_pred hcCCCEEEEEecCceeeecccccCCCccEEEEecCCCchhHHHHHHHHhCCCCCCeecCcccCcccccCCCCCccccccc
Q 006863 376 ASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRA 455 (628)
Q Consensus 376 ~~~k~vVvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~ 455 (628)
.+||+|||+++|+||+|+|+. ++++|||++|+||+++|+|+||||||++|||||||+|| |++. +++|.++.....
T Consensus 541 -~~~~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~ 615 (765)
T PRK15098 541 -TGKPLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNT 615 (765)
T ss_pred -hCcCEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCC
Confidence 468999999999999999863 58999999999999999999999999999999999997 8887 788865322111
Q ss_pred cCCC-----CCCcccccCC--CcccccCcCCCCCCceeCCCccCCCcccccccccccccccccccccccccccCCCCCce
Q 006863 456 ARGY-----PGRTYRFYKG--PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMS 528 (628)
Q Consensus 456 ~~~~-----~~~~Yr~~~~--~~~ypFG~GLSYTtF~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (628)
...| .+.+||||+. +|+||||||||||+|+||++++.+. . .. .+. +
T Consensus 616 ~~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~~--------------------~--~~----~~~-~ 668 (765)
T PRK15098 616 GRPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSSP--------------------T--MK----RDG-K 668 (765)
T ss_pred CCccccCcccccccceeccCCCccccccCCCCCccEEeeccEeccc--------------------c--cc----CCC-e
Confidence 1112 2236899986 5999999999999999999986420 0 00 112 6
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 607 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~ 607 (628)
++|+|+|||||+++|+||||||+++|.++ .+|.|||+||+||+|+|||+++|+|+|+. ++|++||.+++|++|+|+|+
T Consensus 669 i~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~ 747 (765)
T PRK15098 669 VTASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFN 747 (765)
T ss_pred EEEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEE
Confidence 99999999999999999999999999876 89999999999999999999999999999 89999999999999999999
Q ss_pred EEEeCCCCeeE
Q 006863 608 LHIGDLKHSIS 618 (628)
Q Consensus 608 i~vG~ss~~~~ 618 (628)
|+||.||++++
T Consensus 748 v~vG~ss~d~~ 758 (765)
T PRK15098 748 VFIGLDSARVK 758 (765)
T ss_pred EEEECCCCccc
Confidence 99999999875
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-55 Score=468.41 Aligned_cols=254 Identities=31% Similarity=0.520 Sum_probs=221.8
Q ss_pred ccee-eCccccccCCCCCCccccc-CCCCHHHHHHHHHHHHHHHhcCCCCCCceEEeecccccccCCCCCCCCceeeccc
Q 006863 8 GLTY-WSPNVNIFRDPRWGRGQET-PGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (628)
Q Consensus 8 Gi~~-~~P~~di~r~p~~gr~~e~-fgEDP~l~~~~a~a~v~GlQ~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (628)
|||+ |+||+||.|||+|||++|+ |||||++++.|+.|||+|||+. ||++|+|||||||..+ .+++..+..
T Consensus 113 Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~-----gv~at~KHFpGhG~~~---~dsh~~~~~ 184 (397)
T COG1472 113 GINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA-----GVAATIKHFPGHGAVE---GDSHYGLLP 184 (397)
T ss_pred CCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC-----CceeeeccccCCCCCc---CCcccccCC
Confidence 9999 9999999999999999988 9999999999999999999998 8999999999998432 334433378
Q ss_pred CCHHHHHHhccHHHHHHHHcCC--CceEEeccccCCCcccccCHHHHHHHHHhhcCCCcEEEcchhhhhhhhccccccCC
Q 006863 86 VSKQDLEDTYNVPFKACVVEGK--VASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (628)
Q Consensus 86 ~~~~~l~e~~l~pF~~ai~~g~--~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~ 163 (628)
++++.|+|+|++||+.+++.+. +.++|++||+|||.|||.|+++|++|||++|||+|+|||||++|.++...|. +
T Consensus 185 v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g---~ 261 (397)
T COG1472 185 IDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHG---S 261 (397)
T ss_pred CChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhcc---C
Confidence 8999999999999999999986 8899999999999999999999999999999999999999999998776543 5
Q ss_pred hHHHHHHHHHcCCCcCCchh-hH-HHHHHHHHCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCCCCCCCCCCCCHHH
Q 006863 164 PEEAAADAIKAGLDLDCGPF-LA-IHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAH 241 (628)
Q Consensus 164 ~~~a~~~al~AG~D~~~~~~-~~-~~l~~av~~G~i~~~~ld~av~RIL~~k~~~Glf~~~p~~~~~~~~~~~~v~~~~~ 241 (628)
..+.+..+++|||||+|... .. ..+..+...+ +++++++++++|||++|+++|+|+ +|+. .+|
T Consensus 262 ~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~~~-------------~~~ 326 (397)
T COG1472 262 AADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NPYS-------------SEH 326 (397)
T ss_pred HHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CCCc-------------hhh
Confidence 66777889999999998543 22 3333444444 999999999999999999999999 6652 189
Q ss_pred HHHHHHHHhhcceeccCCCCCCCCcCCCCceEEEEccCCccccccccccc
Q 006863 242 QQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 291 (628)
Q Consensus 242 ~~la~~~A~eSivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~ 291 (628)
++++++++++|+|||||+..+|||+ +..++|+++||++... . |+|+
T Consensus 327 ~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 327 RALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 9999999999999999998999999 5567999999999887 5 5554
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=1.4e-49 Score=415.21 Aligned_cols=193 Identities=33% Similarity=0.525 Sum_probs=161.3
Q ss_pred cccee-eCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCceEEeeccccccc-CCCCCCCCceeecc
Q 006863 7 AGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYD-LDNWNGVDRYHFNA 84 (628)
Q Consensus 7 ~Gi~~-~~P~~di~r~p~~gr~~e~fgEDP~l~~~~a~a~v~GlQ~~~~~~~~v~a~~KHF~g~g-~~~~~~~~r~~~~~ 84 (628)
.|||+ |||++||.|+|+|||++|||||||+++++|+.|||+|+|+. ||++|+||||||+ .|+|.+ ....
T Consensus 101 ~Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q~~-----gv~~~~KHFpG~~~~d~~~~----~~~~ 171 (299)
T PF00933_consen 101 LGINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQGA-----GVAATAKHFPGHGAQDSHRD----LPSV 171 (299)
T ss_dssp TT-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHHCT-----TSEEEEEEETTGGCSCTTTT----TEEE
T ss_pred hhhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccccc-----cccccccccccccccccccc----ccee
Confidence 39999 99999999999999999999999999999999999999998 8999999999964 565543 3345
Q ss_pred cCCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHHhhcCCCcEEEcchhhhhhhhccccccCCh
Q 006863 85 RVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTP 164 (628)
Q Consensus 85 ~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~ 164 (628)
.+++++|+|.||+||+.+|+++++.+||+||+.+|++|+|+|+.+|+++||+||||+|+|||||++|+++...+ ..
T Consensus 172 ~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~ 247 (299)
T PF00933_consen 172 DVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNY----SI 247 (299)
T ss_dssp E--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCT----TH
T ss_pred cCCcccccchhcccchhcccccccceeeeeccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhcc----cc
Confidence 67999999999999999995556999999999999999999999999999999999999999999999997643 37
Q ss_pred HHHHHHHHHcCCCcCCchh----hHHHHHHHHHCCCCCHHHHHHHhhhhHHH
Q 006863 165 EEAAADAIKAGLDLDCGPF----LAIHTEGAVRGGLLREEDVNLALAYTITV 212 (628)
Q Consensus 165 ~~a~~~al~AG~D~~~~~~----~~~~l~~av~~G~i~~~~ld~av~RIL~~ 212 (628)
.+++++||+||+||+|.+. ..+.|.++|++|.++++|||+||+|||++
T Consensus 248 ~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 248 EEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH
T ss_pred chHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Confidence 8999999999999998642 24899999999999999999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=3.6e-41 Score=354.35 Aligned_cols=186 Identities=19% Similarity=0.229 Sum_probs=157.4
Q ss_pred ccee-eCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCceEEeecccccccCC---CCCCCCceeec
Q 006863 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD---NWNGVDRYHFN 83 (628)
Q Consensus 8 Gi~~-~~P~~di~r~p~~gr~~e~fgEDP~l~~~~a~a~v~GlQ~~~~~~~~v~a~~KHF~g~g~~---~~~~~~r~~~~ 83 (628)
|||+ |+|++||.++++| |+.|+|||||+++++|+.|||+|||+. ||++|+|||||||.. +|.+.+.
T Consensus 114 Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~-----gv~~~~KHFpG~G~~~~dsh~~~~~---- 183 (337)
T PRK05337 114 GIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA-----GMAATGKHFPGHGAVEADSHVETPV---- 183 (337)
T ss_pred CCCccccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC-----CCEEEecccCCCCCCcCCCCCCCCC----
Confidence 9999 9999999965555 889999999999999999999999998 799999999999954 3332221
Q ss_pred ccCCHHHHHHhccHHHHHHHHcCCCceEEec---cccCCCcccccCHHHHHHHHHhhcCCCcEEEcchhhhhhhhccccc
Q 006863 84 ARVSKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHY 160 (628)
Q Consensus 84 ~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~s---y~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~ 160 (628)
...+.++|++.||+||+.+|++| +.+|||| |+.+|++|||.|+++|++|||+||||+|+|||||++|.++..
T Consensus 184 ~~~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~---- 258 (337)
T PRK05337 184 DERPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV---- 258 (337)
T ss_pred CCCCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh----
Confidence 22366799999999999999988 8999999 999999999999999999999999999999999999986532
Q ss_pred cCChHHHHHHHHHcCCCcCCch---hhHHHHHHHHHCCCCCHHHHHHHhhhhHHHHHHh
Q 006863 161 TRTPEEAAADAIKAGLDLDCGP---FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRL 216 (628)
Q Consensus 161 ~~~~~~a~~~al~AG~D~~~~~---~~~~~l~~av~~G~i~~~~ld~av~RIL~~k~~~ 216 (628)
..+.++++++|++|||||+|.. .....+.+++.+ +.+.+|+++++.+.
T Consensus 259 ~~~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 259 AGDYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred cCCHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 3477889999999999998743 344566777755 67788888887653
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=1.1e-39 Score=327.80 Aligned_cols=215 Identities=41% Similarity=0.594 Sum_probs=153.7
Q ss_pred ceeccCCCCCCCCcCCCCceEEEEccCCccccccccccc-cCCCCcCCHHHHHHHhhcc---eeecccCccccCCcccHH
Q 006863 253 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA-GVACGYTTPLQGISRYAKT---IHQAGCFGVACNGNQLIG 328 (628)
Q Consensus 253 ivLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~-g~~~~~~t~~e~l~~~~~~---~y~~g~~~~~~~~~~~~~ 328 (628)
||||||++++|||++.+. ||+|+|+.+.....++|++. ..+....+++++++++... .+..++. .......++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999988643 99999999998765555443 3455678899999988542 1211111 112456788
Q ss_pred HHHHHhhcCCEEEEEEeCCCcccccc--------CCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeeecccccCC
Q 006863 329 AAEVAARQADATVLVMGLDQSIEAEF--------IDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDP 400 (628)
Q Consensus 329 ~a~~~a~~aD~vIv~vg~~~~~~~Eg--------~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~g~P~~l~~~~~~~ 400 (628)
++++.++++|++||++|.. ++|+ .||.++.|+..|.+||+++++.+ +|+|||+++++||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~~---~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGRP---SGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEETT---SBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEecccc---ccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 9999999999999999922 2333 69999999999999999998764 6899999999999997764 4
Q ss_pred CccEEEEecCCCchhHHHHHHHHhCCCCCCeecCcccCcccccCCCCCccccccccCCCCCCcccccCCCcccccCcCCC
Q 006863 401 RIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMS 480 (628)
Q Consensus 401 ~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~~ypFG~GLS 480 (628)
+++|||++|++|+++++|+||||||++|||||||+|| |++. +++|...... ..+++|++....++||||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLs 224 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLS 224 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS------THCCHHHHTTSESB-TT--B-
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-----ccCcccccCCCCccCcCCCCCE
Confidence 8999999999999999999999999999999999997 8876 7777542111 1234577777899999999999
Q ss_pred CCC
Q 006863 481 YTT 483 (628)
Q Consensus 481 YTt 483 (628)
||+
T Consensus 225 yt~ 227 (227)
T PF01915_consen 225 YTY 227 (227)
T ss_dssp TT-
T ss_pred eeC
Confidence 996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.83 E-value=6.9e-21 Score=155.65 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=59.9
Q ss_pred eEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCC-CCEEecCeEEEEEEeCCC
Q 006863 545 HTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRRIPMGEHSLHIGDLK 614 (628)
Q Consensus 545 evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss 614 (628)
||||||+++|.+. .+|.|+|+||+||+|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999986 89999999999999999999999999999 999999999 699999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.35 E-value=0.012 Score=50.42 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=44.0
Q ss_pred eEEEEEEEEeCCCC-CcceEEEEEEeCCCCCCCcchhhcccccc-ccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeE
Q 006863 528 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 605 (628)
Q Consensus 528 ~~~vsv~VtNtG~~-~G~evvQlY~~~p~~~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 605 (628)
.++++++|+|.|.. ++.-.|++|+.... .+-..| .|+||++++|+|++.. . .+|.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~~---------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~G~ 76 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGNS---------VSTVTIPSLAPGESETVTFTWTP-P-------------SPGS 76 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTEE---------EEEEEESEB-TTEEEEEEEEEE--S-------------S-CE
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCce---------eccEEECCcCCCcEEEEEEEEEe-C-------------CCCe
Confidence 68999999999997 46678888876532 144555 6999999999999997 3 4688
Q ss_pred EEEEEe
Q 006863 606 HSLHIG 611 (628)
Q Consensus 606 y~i~vG 611 (628)
|.|.+-
T Consensus 77 ~~i~~~ 82 (101)
T PF07705_consen 77 YTIRVV 82 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877654
No 9
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=95.38 E-value=0.11 Score=43.48 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=33.9
Q ss_pred EEEEEEEEeCCCCC------cceEEEEEEeCCCCC-------CCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeC
Q 006863 529 LGLHVDIKNTGDMA------GTHTLLVFAKPPAGN-------WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 595 (628)
Q Consensus 529 ~~vsv~VtNtG~~~------G~evvQlY~~~p~~~-------~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~ 595 (628)
+.+.++|+|+++.+ .---.-+.|.++.+. ++.- ...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 56778888888742 111223344444332 2221 23345677999999999999998 5554
Q ss_pred CCCEEecCeEEEEE
Q 006863 596 FGIRRIPMGEHSLH 609 (628)
Q Consensus 596 ~~~~~~~~G~y~i~ 609 (628)
||+|++.
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999875
No 10
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.48 E-value=0.18 Score=41.64 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=36.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCC-C--CCcchhhcccccc-ccCCCCeEEEEEEecCCCCeeEEeCCCCEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-N--WSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPM 603 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~-~--~~P~k~L~gF~kv-~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~ 603 (628)
+++++++|+|.|..+-. -+.+=+..|.+ . ..|. ++ .|+|||+++++|.|..-. -.++
T Consensus 6 ~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~~~~~~~-------~~~~l~pG~s~~~~~~V~vp~-----------~a~~ 66 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLT-NVSLSLSLPEGWTVSASPA-------SVPSLPPGESVTVTFTVTVPA-----------DAAP 66 (78)
T ss_dssp EEEEEEEEE--SSS-BS-S-EEEEE--TTSE---EEE-------EE--B-TTSEEEEEEEEEE-T-----------T--S
T ss_pred EEEEEEEEEECCCCcee-eEEEEEeCCCCccccCCcc-------ccccCCCCCEEEEEEEEECCC-----------CCCC
Confidence 68999999999976532 23444455653 1 2222 22 699999999999998821 1257
Q ss_pred eEEEEEEe
Q 006863 604 GEHSLHIG 611 (628)
Q Consensus 604 G~y~i~vG 611 (628)
|+|.|.+-
T Consensus 67 G~y~v~~~ 74 (78)
T PF10633_consen 67 GTYTVTVT 74 (78)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 99988653
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=91.33 E-value=1.6 Score=37.65 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=38.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCeeEEe
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVD 594 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d 594 (628)
..+.+++|+|+|....+- -+..+....... -.-+..-.|+||++.++++++.+......++
T Consensus 21 ~~~~~v~l~N~s~~p~~f----~v~~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARF----RVRQPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEEEEEEEEECCCCCEEE----EEEeCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 678999999999998543 333443211111 0123345599999999999999325555554
No 12
>PRK13203 ureB urease subunit beta; Reviewed
Probab=89.93 E-value=0.55 Score=40.48 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=31.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
-+++++|+|||+++ ||+=-+...-...| ...=.|+ +-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999999 89843332211111 1111111 3456789999999874
No 13
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=89.63 E-value=0.61 Score=40.18 Aligned_cols=51 Identities=22% Similarity=0.205 Sum_probs=31.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC-----CCcchhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~-----~~P~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
-+++++|+|||+++ +|+=-+...-. .-....=.|| +-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 36899999999999 89843332211 1111111122 3456789999999874
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=86.81 E-value=1.2 Score=38.34 Aligned_cols=51 Identities=25% Similarity=0.198 Sum_probs=31.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC-----CCcchhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~-----~~P~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
-+++++|+|||+++ +|+=-+...-. .--...=.|+ +-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999999 89833332211 1111111121 3456799999999875
No 15
>PRK13201 ureB urease subunit beta; Reviewed
Probab=86.74 E-value=1.1 Score=40.41 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=31.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
-+++++|+|||+++ |||=-+...-...| ...=.|| +-|..+||++++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46889999999999 89843332211111 1111122 3456799999999985
No 16
>PRK13202 ureB urease subunit beta; Reviewed
Probab=86.60 E-value=1.3 Score=38.30 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=30.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
+++++|+|||+++ +|+=-+...-...| ...=.|+ +-|..+|||+++|++.
T Consensus 22 ~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 22 RLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred eEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 6889999999999 88843332211111 1111111 3456789999999875
No 17
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=85.67 E-value=1.1 Score=38.44 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=27.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
.-+++++|+|||+++ +|+=-+.......| ...=.|+ +-|..+||++++|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 357899999999999 89833332211111 1111111 3456789999999874
No 18
>PRK13205 ureB urease subunit beta; Reviewed
Probab=85.06 E-value=1.4 Score=40.56 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=32.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
-+++++|+|||+++ |||=-+...-...| ...=.|| +-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999999 89843332211111 1111122 3456799999999986
No 19
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=82.13 E-value=15 Score=30.97 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=31.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCC-CCCCCcchhhccccccccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPP-AGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p-~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
.+.++++|.|+.+ +.+-|.+. +....| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~~----~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAA----VTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCc----EEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 6889999987655 44444442 221333 4778999999999999954
No 20
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=81.14 E-value=29 Score=38.39 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=57.3
Q ss_pred HHHcCCCceEEeccccCCCc-----ccccCHHHHHHHHHhhcCCCcEEEcchhhhhhhhccccccCChHHHHHHHHHcC-
Q 006863 102 CVVEGKVASVMCSYNQVNGK-----PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG- 175 (628)
Q Consensus 102 ai~~g~~~~vM~sy~~vng~-----pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~~a~~~al~AG- 175 (628)
.|+++ ...+|.+-+++.|. .|+.++.+++.+|+.=+.. |.-+.. ++|=..+|+..|
T Consensus 60 ~iDe~-lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~Ae----------------pGEFs~RAFLNgK 121 (454)
T COG0486 60 IIDEV-LVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAE----------------PGEFSKRAFLNGK 121 (454)
T ss_pred Eeeee-eEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecC----------------CCcchHHHHhcCC
Confidence 44566 56789999999874 6899999888888854433 222222 223345565544
Q ss_pred CCcCCc--------hhhHHHHHHHHH--CCCCCHHHHHHHhhhhHHHHHHh
Q 006863 176 LDLDCG--------PFLAIHTEGAVR--GGLLREEDVNLALAYTITVQMRL 216 (628)
Q Consensus 176 ~D~~~~--------~~~~~~l~~av~--~G~i~~~~ld~av~RIL~~k~~~ 216 (628)
+|+.-- .........|++ +|.++ +++++-.++++.+....
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGALS-QLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHh
Confidence 665321 011123334444 47775 57788888888876654
No 21
>PRK13198 ureB urease subunit beta; Reviewed
Probab=80.84 E-value=2.7 Score=38.84 Aligned_cols=51 Identities=20% Similarity=0.085 Sum_probs=31.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCC-----CCcchhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~-----~~P~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
-+++++|+|||+++ |||=-++..-. .-....=.|+ +-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 36889999999999 89843332211 1111111122 3456789999999875
No 22
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=80.54 E-value=2.6 Score=36.12 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=30.6
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCC----C---CCcc---h--hhccccccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAG----N---WSPN---K--QLIGFKKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~----~---~~P~---k--~L~gF~kv~l~pGes~~V~~~ 583 (628)
-+++++|.|||+++ +|+=-++... + .|.. + ..-.=+-|..+||+.|+|++.
T Consensus 20 ~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 20 PTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred cceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 46788899999999 8883322111 1 1110 0 011123466799999999874
No 23
>PRK13204 ureB urease subunit beta; Reviewed
Probab=80.39 E-value=3 Score=38.60 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=31.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
-.++++|+|||+++ |||=-+...-...| ...=.|+ +-|..+||++++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999999 89843332211111 1111121 3456799999999875
No 24
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=79.76 E-value=5.4 Score=34.66 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=27.6
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEEEE
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLH 609 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~ 609 (628)
.++++++|.|... .++ .+.. .+ ....|.||++++++|+-.. +|+|.++
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~~-----------~~-~~~~l~~g~~~~~~f~~~~----------------~G~y~~~ 91 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIPD-----------LG-ISKVLPPGETATVTFTPLK----------------PGEYEFY 91 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEGG-----------GT-EEEEE-TT-EEEEEEEE-S-----------------EEEEEB
T ss_pred eEEEEEEECCCCc-EEE---EECC-----------Cc-eEEEECCCCEEEEEEcCCC----------------CEEEEEE
Confidence 4678889999885 222 1111 12 2356999999999985433 6888877
Q ss_pred Ee
Q 006863 610 IG 611 (628)
Q Consensus 610 vG 611 (628)
.+
T Consensus 92 C~ 93 (104)
T PF13473_consen 92 CT 93 (104)
T ss_dssp -S
T ss_pred cC
Confidence 65
No 25
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=78.80 E-value=4.6 Score=29.58 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=26.6
Q ss_pred EEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEE
Q 006863 532 HVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLD 583 (628)
Q Consensus 532 sv~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~ 583 (628)
+++++|+|+.. ++++--.+.-. ..+ .+.|-.|+|||+..++++
T Consensus 1 ~F~~~N~g~~~----L~I~~v~tsCgCt~~-----~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP----LVITDVQTSCGCTTA-----EYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc----EEEEEeeEccCCEEe-----eCCcceECCCCEEEEEEE
Confidence 36889999876 44332222221 222 245656999999998875
No 26
>PRK13986 urease subunit alpha; Provisional
Probab=75.50 E-value=4 Score=40.14 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=31.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
=+++++|+|||+++ +|+=-++..-...| ...=.|| +-|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999999 88843332211111 1111111 3456799999999875
No 27
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.24 E-value=11 Score=41.49 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=51.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcccccc-ccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEE
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 606 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y 606 (628)
..++.+.|.|+|+.+=.. +-|=+..|+.= ..+.-.+ ++ .|+|||+++|.++++.-. + -.+|+|
T Consensus 398 e~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW---ei~Vd~~-~I~sL~pge~~tV~ltI~vP~--------~---a~aGdY 461 (513)
T COG1470 398 EKTIRISIENSGNAPLTD-IKLTVNGPQGW---EIEVDES-TIPSLEPGESKTVSLTITVPE--------D---AGAGDY 461 (513)
T ss_pred cceEEEEEEecCCCccce-eeEEecCCccc---eEEECcc-cccccCCCCcceEEEEEEcCC--------C---CCCCcE
Confidence 478899999999766333 44556666651 1123334 45 589999999999998721 1 147888
Q ss_pred EEEEeCCCC----eeEEEEEEe
Q 006863 607 SLHIGDLKH----SISLQANLE 624 (628)
Q Consensus 607 ~i~vG~ss~----~~~~~~~~~ 624 (628)
+|.+-..|. +-+++++|+
T Consensus 462 ~i~i~~ksDq~s~e~tlrV~V~ 483 (513)
T COG1470 462 RITITAKSDQASSEDTLRVVVG 483 (513)
T ss_pred EEEEEEeeccccccceEEEEEe
Confidence 888775433 334444443
No 28
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=75.22 E-value=7.7 Score=34.65 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCC-C-CCCcchhhcccccc-ccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPA-G-NWSPNKQLIGFKKV-HVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~-~-~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~ 586 (628)
+.+++|+|+|+ -.-.+|+.+.... . ...+...|.=+=.. .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999999 4577899888621 1 13333345555555 489999999999 544
No 29
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=74.86 E-value=4.4 Score=40.14 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=32.4
Q ss_pred EEEeCCCCCcceEEEEEEeCCCCC---CCc--------chhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCC
Q 006863 534 DIKNTGDMAGTHTLLVFAKPPAGN---WSP--------NKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGI 598 (628)
Q Consensus 534 ~VtNtG~~~G~evvQlY~~~p~~~---~~P--------~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~ 598 (628)
++-|.|. |.-+++||-+.+... ..| .+.+.+..++.|.||||- +|.+.-.-++|-+.|.
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESi----TL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESI----TLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EE----EE-TTEEEEEEE-TTS
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeE----eeCCCCeeeEEecCCC
Confidence 4567765 788889998886542 222 456888999999999984 6777323356654444
No 30
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=73.63 E-value=5.3 Score=38.90 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 529 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 529 ~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
-+++++|+|||+++ +|+=-++..-...| .+.=.|| +-|..+||++++|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999999 88843332211111 1111222 3456789999998874
No 31
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=71.02 E-value=9 Score=40.77 Aligned_cols=54 Identities=15% Similarity=0.337 Sum_probs=30.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEE--E----EeC--CC-CC--CCcchhhccc-----cc-cccCCCCeEEEEEEec
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLV--F----AKP--PA-GN--WSPNKQLIGF-----KK-VHVTAGALQSVRLDIH 585 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQl--Y----~~~--p~-~~--~~P~k~L~gF-----~k-v~l~pGes~~V~~~l~ 585 (628)
+++++++|||+|+.+ |+| | +++ |. .. ..-..+|.+- .- --|+|||++++++++.
T Consensus 264 ~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp EEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred EEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 799999999999865 555 1 111 11 11 1113355554 22 2489999999999985
No 32
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=70.99 E-value=16 Score=32.99 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=37.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCC------------------CCcchhhccccc-cccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN------------------WSPNKQLIGFKK-VHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~------------------~~P~k~L~gF~k-v~l~pGes~~V~~~l~~ 586 (628)
..+++++|+|+++-.- .+++++..-.+. ..+..+|....+ |.|+|+|+++|+|+|..
T Consensus 28 ~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred EEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 5688888899887543 344444331110 124555555544 57999999999999987
No 33
>COG1470 Predicted membrane protein [Function unknown]
Probab=69.77 E-value=5 Score=43.89 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=51.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEe-CCCC--CCCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCe
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAK-PPAG--NWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMG 604 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~-~p~~--~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 604 (628)
+..++|++.|.|.-+=.- -|=++ .|.. ..--.-+++ -.||.|.|||+++|++++.+ .. -.+||
T Consensus 285 t~sf~V~IeN~g~~~d~y--~Le~~g~pe~w~~~Fteg~~~-vt~vkL~~gE~kdvtleV~p-s~----------na~pG 350 (513)
T COG1470 285 TASFTVSIENRGKQDDEY--ALELSGLPEGWTAEFTEGELR-VTSVKLKPGEEKDVTLEVYP-SL----------NATPG 350 (513)
T ss_pred ceEEEEEEccCCCCCcee--EEEeccCCCCcceEEeeCceE-EEEEEecCCCceEEEEEEec-CC----------CCCCC
Confidence 678999999999876222 22222 3332 100011111 36788999999999999998 31 23689
Q ss_pred EEEEEEeCCCC-----eeEEEEEEe
Q 006863 605 EHSLHIGDLKH-----SISLQANLE 624 (628)
Q Consensus 605 ~y~i~vG~ss~-----~~~~~~~~~ 624 (628)
+|.+.|-.+|. .+.+++++-
T Consensus 351 ~Ynv~I~A~s~s~v~~e~~lki~~~ 375 (513)
T COG1470 351 TYNVTITASSSSGVTRELPLKIKNT 375 (513)
T ss_pred ceeEEEEEeccccceeeeeEEEEec
Confidence 99988775443 444544443
No 34
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=65.44 E-value=11 Score=32.80 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=34.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEE--eCCCCCCCcc-hhhccccccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFA--KPPAGNWSPN-KQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~--~~p~~~~~P~-k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
.++++++++|..+..-+. |++.+ ..-...+.+. .-.+-...+.|+|||++++++.+.+
T Consensus 16 d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp EEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 589999999999988443 22222 1112223332 2233345567999999999999988
No 35
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=61.72 E-value=22 Score=33.10 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=40.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccc-cCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH-VTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~-l~pGes~~V~~~l~~ 586 (628)
-+.|.++.+|+++. ++-=+-+..+. -..-.++++|.++. |+||++.++.+-++-
T Consensus 86 mvsIql~ftN~s~~---~i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 86 MVSIQLTFTNNSDE---PIKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred cEEEEEEEEecCCC---eecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 37899999999985 44445555543 12345889999996 899999999998875
No 36
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=58.98 E-value=26 Score=32.52 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=36.2
Q ss_pred eEEEEEEEEeCCCCCcceE-EEE--EEeC-CCCC--CCcchhhcccccc------ccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHT-LLV--FAKP-PAGN--WSPNKQLIGFKKV------HVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~ev-vQl--Y~~~-p~~~--~~P~k~L~gF~kv------~l~pGes~~V~~~l~~ 586 (628)
++.|..+|||+|+.+=++| +++ +-.. .... ..=..++.+|.+. .|+|||++.-++.++.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 6899999999999864433 122 2111 1111 2224445556322 2999999999988874
No 37
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=56.42 E-value=9.1 Score=40.68 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=35.1
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCCCCCh--hHHHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 331 ~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~--~q~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
.+..+.||+||++.|... .+|.+|.++--.. --.++++++.+.+++..|+++. +||+|+
T Consensus 74 ~~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 356789999999988643 4555664331111 1234556666654435555555 599987
No 38
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=56.12 E-value=33 Score=31.07 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=38.9
Q ss_pred eEEEEEEEEeCCCC----CcceEEEEEEeCCCCC---CCcchhhccccccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDM----AGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~----~G~evvQlY~~~p~~~---~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
.-.+.+++||+|+. .|.=-|++. ..... ....++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 35789999999995 677667766 22221 12222223456788999999999998876
No 39
>COG1160 Predicted GTPases [General function prediction only]
Probab=55.95 E-value=32 Score=37.88 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=32.7
Q ss_pred HHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEec
Q 006863 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (628)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~ 387 (628)
+++..++++||++|+++-.. + .+.+...++.+.|. ..+||+|+|+|-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~-------Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----E-------GITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----C-------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 46677889999999998422 2 23455555666555 467899999883
No 40
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=51.33 E-value=35 Score=30.92 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=31.9
Q ss_pred EEEEEEEeCCCCC----cceEEEEEEeCCCCC---------------CCcc--hhhccccccccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMA----GTHTLLVFAKPPAGN---------------WSPN--KQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~----G~evvQlY~~~p~~~---------------~~P~--k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
+|+|+.+|+|+.+ |--.|- ..+... --|. .+..+-.|+ |.|||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkl-iggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKV-IGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEccc-cCCCceEEEEEECCC
Confidence 5888999999876 554442 222110 0121 133333332 699999999999864
No 41
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=50.17 E-value=1e+02 Score=25.40 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=43.1
Q ss_pred eEEEEEEEEeC-CC-CCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeE
Q 006863 528 SLGLHVDIKNT-GD-MAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 605 (628)
Q Consensus 528 ~~~vsv~VtNt-G~-~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 605 (628)
.+++++.+-|. .. ..|. -.++|+...... . .+.....-.|.||++..|+|.+.. +.+ +.+..|.+.+..|
T Consensus 5 ~f~A~i~il~~~~~i~~Gy-~~~l~~~t~~~~---~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g- 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPGY-QATVHIGSIRQT---A-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG- 76 (87)
T ss_pred EEEEEEEEEcCCCcccCCC-EeEEEEcCCEEE---E-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-
Confidence 35566666662 23 3443 355666554321 1 111111246899999999999644 456 4455567777777
Q ss_pred EEEEEe
Q 006863 606 HSLHIG 611 (628)
Q Consensus 606 y~i~vG 611 (628)
-++.+|
T Consensus 77 ~tva~G 82 (87)
T cd03708 77 RTKGVG 82 (87)
T ss_pred CcEEEE
Confidence 566655
No 42
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=48.36 E-value=95 Score=28.88 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=35.8
Q ss_pred ccccCCCCCceEEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcc-hhhccccccccCCCCeEEEEEEecC
Q 006863 518 VAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPN-KQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 518 ~~~~~~~~~~~~~vsv~VtNtG~~~G~evvQlY~~~p~~~-~~P~-k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
++...|++.....|-|+|+ .....|++|...-... ..|- -.-+.-=...|.|||+..|=+.++.
T Consensus 59 VsN~lwEn~~~~~IcV~I~-----s~~~~i~fy~~~~~~~~~~~~sd~a~~~i~ftv~~ge~v~VGm~~~~ 124 (146)
T PF06510_consen 59 VSNHLWENGADVPICVTIS-----SSSDSIEFYTGDYDSYITGPGSDSARQSICFTVEPGESVKVGMIFDS 124 (146)
T ss_pred eecccccccCCceEEEEEe-----cCCCcEEEEecCCCccccCCccccccceEEEEecCCCeeEEEEEEec
Confidence 3334455411356677776 2356799998643321 1221 0111111335899999999999987
No 43
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=47.95 E-value=12 Score=39.47 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||+||++.|... .+|.+|.++ -..- .++++++.+..++..++++. +||+|+
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~a~~~~ivivv-tNPvDv 115 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEYAKPTVKVLVI-GNPVNT 115 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCchHH
Confidence 46789999999988643 345555432 1222 34455565544332444444 599987
No 44
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=45.54 E-value=49 Score=35.36 Aligned_cols=54 Identities=19% Similarity=0.414 Sum_probs=32.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEE---------EEeC-CCCC---CCcchhhcc--cc---ccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLV---------FAKP-PAGN---WSPNKQLIG--FK---KVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQl---------Y~~~-p~~~---~~P~k~L~g--F~---kv~l~pGes~~V~~~l~~ 586 (628)
+++++++|||.|+-+ |.| ++.. .... ..| ++|.+ -. ..-++|||+++|+++..-
T Consensus 283 ~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP-~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 283 ALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYP-RELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred EEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCCh-HHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 689999999999854 333 1211 0111 233 33332 21 224899999999998764
No 45
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=44.89 E-value=47 Score=24.47 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=27.3
Q ss_pred HHHHHHHCCCCCHHHHHHHhhhhHHHHHHhC
Q 006863 187 HTEGAVRGGLLREEDVNLALAYTITVQMRLG 217 (628)
Q Consensus 187 ~l~~av~~G~i~~~~ld~av~RIL~~k~~~G 217 (628)
..+..++...-+.+.|+..|..+|.+|..+|
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 4566777888999999999999999999988
No 46
>PRK05442 malate dehydrogenase; Provisional
Probab=44.43 E-value=19 Score=38.25 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=32.6
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||+||++.|... .+|.+|.++ -... .++++++.+..++..++++. +||+|+
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 135 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVLVV-GNPANT 135 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHH
Confidence 56789999999887542 345565432 1222 23445555533334554444 599987
No 47
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=44.03 E-value=18 Score=38.39 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=33.7
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 331 ~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
.+..+.||+||++.|... .+|.+|.++ -... .++++++.+..++..++++. +||+|+
T Consensus 71 ~~~~~~aDiVVitAG~~~---~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 71 EEAFKDVDVAILVGAFPR---KPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 356789999999988643 344455432 1222 34555665543345555555 599986
No 48
>PLN02303 urease
Probab=43.93 E-value=27 Score=41.43 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=31.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 583 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 583 (628)
+++++|+|||+|+ ||+=-++..-...| ...=.|| +-|..+|||+++|++.
T Consensus 151 ~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 151 AVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred eEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 6889999999999 89843332211111 1111222 3466799999999985
No 49
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=43.36 E-value=67 Score=25.07 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHHhc-CCCEEEEEe
Q 006863 363 PGRQQELVSRVAKAS-RGPVVLVLM 386 (628)
Q Consensus 363 ~~~q~~li~~v~~~~-~k~vVvVl~ 386 (628)
.++|..|.+++.... ++|+|+|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 478999999998766 789988875
No 50
>PLN00135 malate dehydrogenase
Probab=43.31 E-value=19 Score=38.00 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=33.2
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||+||++.|... .+|.+|.++ -... .++++++.+..++..++++. +||+|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dl--l~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDV--MSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHH
Confidence 46789999999988653 344455432 1112 34556666532345555545 599987
No 51
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.20 E-value=22 Score=37.82 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=33.3
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 331 ~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
.+..+.||+||++.|... .+|.+|.++ -... .++.+++.+.+.+..++++. +||+|+
T Consensus 73 ~~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (322)
T cd01338 73 NVAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNT 133 (322)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHH
Confidence 356789999999988643 345555433 2222 23445555543224555444 599987
No 52
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.80 E-value=1.3e+02 Score=29.05 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=49.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEE-eCCCCC-----CCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCC---
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFA-KPPAGN-----WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGI--- 598 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~-~~p~~~-----~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~--- 598 (628)
.++|+++|.|.|+-+--+| +|.= ++|... +.+... |+ .|+||++.+-++.|.+ .....++-...
T Consensus 39 ~v~V~~~iyN~G~~~A~dV-~l~D~~fp~~~F~lvsG~~s~~---~~--~i~pg~~vsh~~vv~p-~~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDV-KLTDDSFPPEDFELVSGSLSAS---WE--RIPPGENVSHSYVVRP-KKSGYFNFTPAVVT 111 (181)
T ss_pred EEEEEEEEEECCCCeEEEE-EEECCCCCccccEeccCceEEE---EE--EECCCCeEEEEEEEee-eeeEEEEccCEEEE
Confidence 6999999999999875554 4433 233221 222211 22 4999999999999998 66777665443
Q ss_pred EEecCeEEEEEEeCCC
Q 006863 599 RRIPMGEHSLHIGDLK 614 (628)
Q Consensus 599 ~~~~~G~y~i~vG~ss 614 (628)
+..+.|.=.+.++.|+
T Consensus 112 Y~~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSS 127 (181)
T ss_pred EECCCCCceeEEEEec
Confidence 3334443344444443
No 53
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=39.58 E-value=29 Score=39.03 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=35.0
Q ss_pred HHHhhcCCCcEEEcchhhhhhhhccccccCChHHHHHHHHHcCCCcCCc
Q 006863 133 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 181 (628)
Q Consensus 133 ~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~ 181 (628)
=|++=+||+|.|+||.++.+.+.-. ....++++.+.---.-|.|+.|.
T Consensus 74 Glh~f~~w~g~ilTDSGgfQv~s~g-~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 74 GLHKLLGFDGPIMTDSGSYQLLVYG-DVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred CHHHHhCCCCCeEeccCCcEEEEcC-CccCCHHHHHHHHHHhCCCEEeE
Confidence 3667799999999999987655432 23457777666556789999873
No 54
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=39.14 E-value=97 Score=31.17 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=32.9
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC------CCcchhhccccccccCCCCeEEEEEEec
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGN------WSPNKQLIGFKKVHVTAGALQSVRLDIH 585 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~------~~P~k~L~gF~kv~l~pGes~~V~~~l~ 585 (628)
.++++|+|+|+. .-.+|.-+...... ..|+ -..|+||+++.|++-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPP-------l~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPP-------VARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCC-------eEEECCCCceEEEEEEC
Confidence 467888999976 47889988754321 1232 23589999999998643
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=39.05 E-value=81 Score=29.06 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=14.0
Q ss_pred ccCCCCeEEEEEEecC
Q 006863 571 HVTAGALQSVRLDIHV 586 (628)
Q Consensus 571 ~l~pGes~~V~~~l~~ 586 (628)
.|+|||+++++|..+.
T Consensus 95 ~I~pGet~TitF~adK 110 (135)
T TIGR03096 95 VIKAGETKTISFKADK 110 (135)
T ss_pred EECCCCeEEEEEECCC
Confidence 4899999999999875
No 56
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=38.30 E-value=22 Score=30.21 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=16.8
Q ss_pred CcchhhccccccccCCCCeEEEEEEecC
Q 006863 559 SPNKQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 559 ~P~k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
.|.-.|+ .++.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 3444444 3778999999999998754
No 57
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.99 E-value=26 Score=37.29 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.+|+||++.|... .++.+|..+ -..- .++++.+.+..++..++++. .||+|+
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l--~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDL--LKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 45679999999988643 234444322 1122 33445555543334555555 489976
No 58
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=36.21 E-value=30 Score=36.53 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=35.0
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCC--hhHHHHHHHHHHhcCCCEEEEEecCceeeec
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~--~~q~~li~~v~~~~~k~vVvVl~~g~P~~l~ 394 (628)
+..+.||+||++.|... +.|-+|.+|--. .-..++.+++.+.+. ..++++. .||+|+.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVv-tNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVV-TNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEe-cCcHHHH
Confidence 45689999999988654 455566443110 112455666766544 4555444 5999873
No 59
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=36.15 E-value=28 Score=37.05 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.+|+||+..|... .++.+|.++ -... .++++++.+..++..|+++. +||+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 46789999999888643 234344322 1222 24455565543344665555 499987
No 60
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.14 E-value=1e+02 Score=26.27 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=29.8
Q ss_pred HHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEE
Q 006863 330 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 384 (628)
Q Consensus 330 a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvV 384 (628)
..+..+++|+||++++. ....-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~---------------vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDY---------------VSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCC---------------cChHHHHHHHHHHHHcCCcEEEE
Confidence 44567899999998853 23456678888888888887754
No 61
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=35.46 E-value=22 Score=38.81 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||+||++.|... ++|.+|.++ -..-. ++.+++.+..++..++++. +||+|+
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv 175 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADL--LDINGQIFADQGKALNAVASKNCKVLVV-GNPCNT 175 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHH
Confidence 46789999999887543 345455432 12222 3344454433334544444 699987
No 62
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=35.43 E-value=1.2e+02 Score=34.01 Aligned_cols=48 Identities=29% Similarity=0.370 Sum_probs=37.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
.+++.++|+-+|++. |.+||-+.. ++.+++.+..|.-+. +.|+|.|..
T Consensus 328 ~~~i~ftv~a~g~~~----vta~V~d~~------g~~~~~~~~~v~d~s-~~vtL~Ls~ 375 (478)
T PRK13211 328 AATLDFTVTATGDMN----VEATVYNHD------GEALGSKSQTVNDGS-QSVSLDLSK 375 (478)
T ss_pred cEEEEEEEEeccceE----EEEEEEcCC------CCeeeeeeEEecCCc-eeEEEeccc
Confidence 688999999888664 778887654 477788888887755 888888875
No 63
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=35.01 E-value=1.6e+02 Score=25.17 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=31.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeC----CCCCCCcchhh-ccccccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKP----PAGNWSPNKQL-IGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~----p~~~~~P~k~L-~gF~kv~l~pGes~~V~~~l~~ 586 (628)
-.+++++++|+.+.+ ++|+.++ ..+- ++... ..++++.|.|+|+.+|+..-+.
T Consensus 25 ~~~~~~~l~N~~~~~----~~l~Yrf~WyD~~G~--~v~~~~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 25 LLRAQATLSNKSSKP----LTLQYRFYWYDKQGL--EVDPEQSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp EEEEEEEEEE-SSS-----EEEEEEEEEE-TTS---EE--TT---EEEEE-TT-EEEEEEE-SS
T ss_pred eEEEEEEEEECCCCc----EEEEEEEEEECCCCC--CcCCCCCCCEEEEEcCCCEEEEEEECCC
Confidence 689999999999988 5555553 4442 22222 5688899999999999887765
No 64
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=34.07 E-value=86 Score=27.43 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=30.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEEE-----EeCCCCC---CCcch---hhccc--cccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVF-----AKPPAGN---WSPNK---QLIGF--KKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY-----~~~p~~~---~~P~k---~L~gF--~kv~l~pGes~~V~~~l~~ 586 (628)
..+.+++|+|.|+.+=.--+... ....... ..|.. ....| .++.|+||++++|+++++.
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 46888999999997543322222 1110111 11110 02333 4567899999999999998
No 65
>PRK05086 malate dehydrogenase; Provisional
Probab=33.14 E-value=32 Score=36.37 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~---~q~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.+|+||++.|... .++.+|.++ |.. --.++++++.+.+.+ .++++. .||.|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~~~-~ivivv-sNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTCPK-ACIGII-TNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhCCC-eEEEEc-cCchHH
Confidence 45578999999998643 233344332 111 234566677665433 444433 599964
No 66
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.76 E-value=39 Score=35.63 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||+||++.|... .+|.+|.-+.|-..-. ++++++.+.+. ..++++. .||+|+
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~ivv-sNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVIILI-TNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEe-cCcHHH
Confidence 46789999999988643 2333321122222233 34455555443 4554444 599987
No 67
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=32.32 E-value=77 Score=21.22 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=22.0
Q ss_pred HHHHHHHHCCCCCHHHHHHHhhhhH
Q 006863 186 IHTEGAVRGGLLREEDVNLALAYTI 210 (628)
Q Consensus 186 ~~l~~av~~G~i~~~~ld~av~RIL 210 (628)
..|.+...+|.||++..++.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4678889999999999999988886
No 68
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=32.27 E-value=5.2e+02 Score=26.44 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=10.0
Q ss_pred hhcCCCcEEEcchhhhh
Q 006863 136 GQWRLDGYIVSDCDSVG 152 (628)
Q Consensus 136 ~e~gf~G~v~SD~~~~~ 152 (628)
++.||+.+.+.|...|.
T Consensus 29 e~aG~d~i~vGds~~~~ 45 (254)
T cd06557 29 DEAGVDVILVGDSLGMV 45 (254)
T ss_pred HHcCCCEEEECHHHHHH
Confidence 45566666666665543
No 69
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=31.59 E-value=10 Score=35.03 Aligned_cols=54 Identities=28% Similarity=0.463 Sum_probs=29.9
Q ss_pred HhhcCCEEEEEEeCCCccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCceeee
Q 006863 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 333 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
..++||++|++.|... .+|.+|..+ -.... ++.+++.+.+.+.++ ++. .+|+++
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p~~~v-ivv-tNPvd~ 123 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAPDAIV-IVV-TNPVDV 123 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHSTTSEE-EE--SSSHHH
T ss_pred ccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCCccEE-EEe-CCcHHH
Confidence 5679999999877543 344454332 12222 344555555544343 334 589986
No 70
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=31.52 E-value=1.1e+02 Score=27.80 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.5
Q ss_pred HHHHHHhhcCCEEEEEEe
Q 006863 328 GAAEVAARQADATVLVMG 345 (628)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg 345 (628)
.++.+.++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999998874
No 71
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=30.94 E-value=1.1e+02 Score=30.07 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=32.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccc----------cccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----------VHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~k----------v~l~pGes~~V~~~l~~ 586 (628)
..++++.|+=++. ++.=+|+|+--.|.+..+++.. |..| ..|.|||..+|+|+|.+
T Consensus 97 ~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 97 PPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 4667777775554 4477777777777764333222 3333 35899999999999987
No 72
>PRK13555 azoreductase; Provisional
Probab=29.99 E-value=1.1e+02 Score=30.27 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=26.1
Q ss_pred HHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHH
Q 006863 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 375 (628)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~ 375 (628)
.+..+..+.||.+|++.=. + ++.+|..-+.+|+.+..
T Consensus 81 ~~~~~~~~~AD~lvi~~P~---~--------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPL---W--------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHcCEEEEEcCc---c--------cccchHHHHHHHHHHhc
Confidence 4556778899999987521 1 45678877788887764
No 73
>PRK13556 azoreductase; Provisional
Probab=29.80 E-value=1.4e+02 Score=29.32 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHH
Q 006863 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 375 (628)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~ 375 (628)
++..+..+.||.+|++.=.. ++..|..-+.+|+.+..
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-----------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-----------ccCCcHHHHHHHHHHhc
Confidence 45557788999999875221 46678888888888875
No 74
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=29.74 E-value=1.3e+02 Score=33.79 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=37.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhc-cccccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-GFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~-gF~kv~l~pGes~~V~~~l~~ 586 (628)
+-+++++|+|+|...-+.+.-.|.. |..-..|..+.. -+-.-.|.|||+..|+|.+..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 4589999999999877766666643 111011111111 122335899999999999987
No 75
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.27 E-value=41 Score=35.50 Aligned_cols=55 Identities=25% Similarity=0.396 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||+||++.|... .+|.+|.++ -... .+.++++.+.++ ..++++. .||+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p-~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACP-KALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEEEc-cCchhh
Confidence 46789999999988643 334455432 1222 234555655443 4554444 599986
No 76
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=29.14 E-value=36 Score=35.68 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=33.1
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCCh--hHHHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~--~q~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||++|++.|... .++.+|.++-.-. --.++.+++.+.+ ++.++++. ++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~-sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVV-SNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc-cChHHH
Confidence 46789999999998653 3455554332111 1234555565544 34554444 599987
No 77
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=29.07 E-value=1.5e+02 Score=29.29 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=33.9
Q ss_pred HHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 329 AAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 329 ~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+.++....||.+|++..- -|+..|..-...|+.++.+ +| +-=.. ..+|.-|
T Consensus 80 ~l~~ef~aAD~vVi~~PM-----------~Nf~iPa~LK~yiD~i~~a-Gk-TFkYt-e~Gp~GL 130 (202)
T COG1182 80 KLLEEFLAADKVVIAAPM-----------YNFNIPAQLKAYIDHIAVA-GK-TFKYT-ENGPVGL 130 (202)
T ss_pred HHHHHHHhcCeEEEEecc-----------cccCCCHHHHHHHHHHhcC-Cc-eEEec-cCCcccc
Confidence 345566789999987632 2688899999999999864 44 33222 2356655
No 78
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.02 E-value=2.2e+02 Score=31.56 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHHhhc---CCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeeec
Q 006863 327 IGAAEVAARQ---ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (628)
Q Consensus 327 ~~~a~~~a~~---aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~g~P~~l~ 394 (628)
+..+.+.+.. .|++||+=|.-+ ..+| .+=+...+++++++ +..|||.- .|.=.|.+
T Consensus 175 i~~al~~~~~~~~~dviii~RGGGs--------~eDL-~~Fn~e~~~rai~~-~~~Pvis~--iGHe~D~t 233 (432)
T TIGR00237 175 IVESIELANTKNECDVLIVGRGGGS--------LEDL-WSFNDEKVARAIFL-SKIPIISA--VGHETDFT 233 (432)
T ss_pred HHHHHHHhhcCCCCCEEEEecCCCC--------HHHh-hhcCcHHHHHHHHc-CCCCEEEe--cCcCCCcc
Confidence 3444444443 688888654321 1222 12356778999985 67887643 36666553
No 79
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=28.97 E-value=2e+02 Score=31.78 Aligned_cols=57 Identities=25% Similarity=0.243 Sum_probs=32.9
Q ss_pred cHHHHHHHhhc--CCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeeec
Q 006863 326 LIGAAEVAARQ--ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (628)
Q Consensus 326 ~~~~a~~~a~~--aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~g~P~~l~ 394 (628)
.+.+|.+.+.. .|++|++=|.- ...+|. +=++..+++++++ +..|||.- .|.=.|..
T Consensus 180 ~i~~al~~~~~~~~Dviii~RGGG--------S~eDL~-~Fn~e~v~~ai~~-~~~Pvis~--IGHE~D~t 238 (438)
T PRK00286 180 SIVAAIERANARGEDVLIVARGGG--------SLEDLW-AFNDEAVARAIAA-SRIPVISA--VGHETDFT 238 (438)
T ss_pred HHHHHHHHhcCCCCCEEEEecCCC--------CHHHhh-ccCcHHHHHHHHc-CCCCEEEe--ccCCCCcc
Confidence 34455555555 48888865422 122221 2246789999986 67887643 36655543
No 80
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=28.77 E-value=1.2e+02 Score=31.01 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=35.1
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcch----hhcccccc-ccCCCCeEEEEEEec
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK----QLIGFKKV-HVTAGALQSVRLDIH 585 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k----~L~gF~kv-~l~pGes~~V~~~l~ 585 (628)
.++++|+|+|+. .-.||..+........|.+ .+.-.==+ .|+||+.+.|+|...
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 478888999986 5899999865332222321 13333333 389999999997654
No 81
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=28.72 E-value=75 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=16.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEE
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVF 550 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY 550 (628)
.++.+++|+|+|..... -|++-
T Consensus 13 ~v~Yti~v~N~g~~~a~-~v~v~ 34 (53)
T TIGR01451 13 TITYTITVTNNGNVPAT-NVVVT 34 (53)
T ss_pred EEEEEEEEEECCCCceE-eEEEE
Confidence 79999999999997744 34443
No 82
>PLN02602 lactate dehydrogenase
Probab=28.53 E-value=38 Score=36.39 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=31.9
Q ss_pred HhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 333 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
..+.||+||++.|... .+|.+|.++ -... .++++++.+.+. +.++++. .||+++
T Consensus 102 ~~~daDiVVitAG~~~---k~g~tR~dl--l~~N~~I~~~i~~~I~~~~p-~~ivivv-tNPvdv 159 (350)
T PLN02602 102 VTAGSDLCIVTAGARQ---IPGESRLNL--LQRNVALFRKIIPELAKYSP-DTILLIV-SNPVDV 159 (350)
T ss_pred HhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCchHH
Confidence 4689999999988643 345555433 1222 244455555443 4555545 499977
No 83
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.48 E-value=91 Score=24.04 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.1
Q ss_pred ecCeEEEEEEe
Q 006863 601 IPMGEHSLHIG 611 (628)
Q Consensus 601 ~~~G~y~i~vG 611 (628)
++||+|+|.|-
T Consensus 36 L~~G~Y~l~V~ 46 (66)
T PF07495_consen 36 LPPGKYTLEVR 46 (66)
T ss_dssp --SEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 57999999886
No 84
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=28.30 E-value=67 Score=25.88 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.8
Q ss_pred eEEEEEEEEeCCCCCcce
Q 006863 528 SLGLHVDIKNTGDMAGTH 545 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~e 545 (628)
.++.+++|+|+|+..-..
T Consensus 42 ~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATN 59 (76)
T ss_pred EEEEEEEEEECCCCeeEe
Confidence 799999999999998554
No 85
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=28.05 E-value=33 Score=38.08 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||+||++.|... ++|.+|.++ -..- .++.+++.+..++..++++. +||+|+
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dL--l~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv 231 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADL--LDINGQIFAEQGKALNEVASRNVKVIVV-GNPCNT 231 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHH
Confidence 46789999999887543 355566432 1222 23444555412334554444 699987
No 86
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=27.87 E-value=2.4e+02 Score=25.93 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=38.4
Q ss_pred eEEEEEEEEeCCCCCc-ceEEEEEEeCCCCC------CCcchhhccc--cccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAG-THTLLVFAKPPAGN------WSPNKQLIGF--KKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G-~evvQlY~~~p~~~------~~P~k~L~gF--~kv~l~pGes~~V~~~l~~ 586 (628)
.+.++.+++|+++.+= -=.+++-+.+..+. -.|..-|..- .+..|+||++.++++.+..
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 6899999999999751 22344444544442 2453334432 2446999999999998874
No 87
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=27.61 E-value=1.3e+02 Score=30.53 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=35.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchh---hcccccc-ccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQ---LIGFKKV-HVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~---L~gF~kv-~l~pGes~~V~~~l~~ 586 (628)
.++++|+|+|+. .-.+|..+........|.+. +.-.=-+ .|+||+.+.|+|-...
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~ 100 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTA 100 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCC
Confidence 578888999987 58999999643322223211 2211222 3899999999987543
No 88
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=27.34 E-value=2.1e+02 Score=28.72 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=34.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccc-cccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK-VHVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~k-v~l~pGes~~V~~~l~~ 586 (628)
.++++|+|+|+. .-.||..+........+...+.---= ..|+||++++|+|....
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~ 91 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSG 91 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECC
Confidence 578999999986 48899999764321111000111111 13899999999987653
No 89
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=27.32 E-value=56 Score=34.42 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=30.1
Q ss_pred HhhcCCEEEEEEeCCCccccccCCCCCCCCC--hhHHHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 333 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~--~~q~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
..+.||++|+++|... .++.+|.++-.- .--.+.++++.+.+. ..++++. ++|+++
T Consensus 69 ~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~-~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVV-TNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-CCchHH
Confidence 4789999999998653 344444322000 011234444554443 3444444 489876
No 90
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=27.13 E-value=59 Score=34.39 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||+||++.|... .+|.+|.++ -... .+..+++.+.++ ..++++. .||+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~~p-~~iiivv-sNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAESCP-KAMILVI-TNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHhCC-CeEEEEe-cCchhh
Confidence 46789999999998643 345555443 1222 234455555443 4554444 599984
No 91
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=26.31 E-value=2.4e+02 Score=26.83 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEec
Q 006863 327 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (628)
Q Consensus 327 ~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~ 387 (628)
..+....++.+|.+|+++-... | +.....+.++.+. ..+.|+|+|++-
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~-----g-------~~~~~~~~l~~~~-~~~~p~ivvlNK 131 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAND-----G-------IQPQTEEHLKILR-ELGIPIIVVLNK 131 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTT-----B-------STHHHHHHHHHHH-HTT-SEEEEEET
T ss_pred eecccceecccccceeeeeccc-----c-------ccccccccccccc-ccccceEEeeee
Confidence 3456667889999999995331 1 2344455666654 467888888763
No 92
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=26.02 E-value=1.5e+02 Score=27.65 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.1
Q ss_pred hhhccccccccCCCCeEEEEEEecC
Q 006863 562 KQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 562 k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
..|.+-.++.|.|||+++++++++.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCC
Confidence 3467777888999999999999986
No 93
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=25.90 E-value=75 Score=29.93 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=14.6
Q ss_pred cccCCCCeEEEEEEecC
Q 006863 570 VHVTAGALQSVRLDIHV 586 (628)
Q Consensus 570 v~l~pGes~~V~~~l~~ 586 (628)
++|+||+|.+.++.++.
T Consensus 116 v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 116 VTLAPGKSGELVVVFTG 132 (158)
T ss_pred eEeCCCCcEEEEEEecC
Confidence 46999999999988884
No 94
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=25.74 E-value=46 Score=34.98 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=30.0
Q ss_pred hhcCCEEEEEEeCCCccccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEecCceeee
Q 006863 334 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 334 a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~----li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
++.||++|+++|... .++.+|.+ |-....+ .++++.+.++ ..++++. .||+++
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~--l~~~N~~iv~~i~~~I~~~~p-~~~iIv~-tNP~di 123 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSRED--LLSMNAGIVREVTGRIMEHSP-NPIIVVV-SNPLDA 123 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHH--HHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHH
Confidence 579999999998654 22334422 2223333 4445555443 3444444 489987
No 95
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=25.72 E-value=2.3e+02 Score=28.59 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=33.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCC-Ccchhhccccc-cccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNW-SPNKQLIGFKK-VHVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~-~P~k~L~gF~k-v~l~pGes~~V~~~l~~ 586 (628)
.++++|+|+++. .--.||..+....... .|. .-.-= ..|+||++++++|-...
T Consensus 44 ~~sv~i~N~~~~-~p~LvQsWv~~~~~~~~~pF---ivtPPlfrl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSAS-NVFLIQSWVANADGSRSTDF---IITPPLFVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCCC-ccEEEEEEEecCCCCccCCE---EEcCCeEEECCCCceEEEEEECC
Confidence 578999999862 2366999997654321 110 00001 23899999999987654
No 96
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=25.66 E-value=2.9e+02 Score=28.90 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=41.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcc-ccccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIG-FKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~g-F~kv~l~pGes~~V~~~l~~ 586 (628)
.+-+.|+|.|...-.-=..-+..+..+. +.+.|.+.= ++.=.|.||++..|-++.+.
T Consensus 203 ~vav~v~l~N~~g~~PW~~~~A~L~g~~--G~~lr~~~V~~~~~~i~PG~~grVvVe~e~ 260 (289)
T PF09544_consen 203 WVAVVVTLRNLSGQPPWTPGEARLTGPS--GEPLRALAVRWQEGPIAPGGSGRVVVEAEA 260 (289)
T ss_pred eEEEEEEEECCCCCCCceeeEEEEECCC--CCcceeeeeecccCccCCCCceeEEEEecC
Confidence 5789999999555444445567776555 445555544 66677999999999999986
No 97
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=25.50 E-value=76 Score=34.57 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCEEEEEec-Cceeeeccccc-------CCCccEEEEecCCCchhHHHHHHHHhCCC
Q 006863 367 QELVSRVAKASRGPVVLVLMC-GGPVDVSFAKN-------DPRIGAILWVGYPGQAGGAAIADVLFGRA 427 (628)
Q Consensus 367 ~~li~~v~~~~~k~vVvVl~~-g~P~~l~~~~~-------~~~v~AiL~a~~~G~~~g~AlAdVL~G~~ 427 (628)
.++|+++.+.+++|||+|.++ |+++..-.+.. ...|+.++...-|=.-+..|+..+++|+.
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~~ 175 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGDN 175 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhhh
Confidence 456777666568899999887 77765432211 13688888776665556789999999983
No 98
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=25.43 E-value=83 Score=27.55 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=27.5
Q ss_pred eEEEEEEEEeCCCCCcce-EEEEEEeCCCCC-CCcchh----hccccccccCCCCeEEEEEEecC
Q 006863 528 SLGLHVDIKNTGDMAGTH-TLLVFAKPPAGN-WSPNKQ----LIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~e-vvQlY~~~p~~~-~~P~k~----L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
-+.|+|+|+|+|+-+-.- ..+..+.+.... -.|... ...+--..|+||++.+..+-+..
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 589999999999865321 013334444432 112111 11144557999999886665443
No 99
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=25.39 E-value=2.8e+02 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=13.3
Q ss_pred CCCCcCCCCceEEEEcc
Q 006863 262 TLPLSTLRHHTVAVIGP 278 (628)
Q Consensus 262 ~LPL~~~~~~kIaviGp 278 (628)
+||+.+....+|.++|.
T Consensus 2 ~~~~~~~~~~~iv~~GD 18 (191)
T PRK10528 2 LLTFRAAAADTLLILGD 18 (191)
T ss_pred ccccccCCCCEEEEEeC
Confidence 57887766779999994
No 100
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=24.62 E-value=59 Score=32.55 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=40.2
Q ss_pred HHHHHHcCCCceEEeccccCCCccc-ccCHHHHHHHHHhhcCCCcEEEcchhh
Q 006863 99 FKACVVEGKVASVMCSYNQVNGKPT-CADPDILKNTIHGQWRLDGYIVSDCDS 150 (628)
Q Consensus 99 F~~ai~~g~~~~vM~sy~~vng~pa-~~s~~ll~~~LR~e~gf~G~v~SD~~~ 150 (628)
|+.|++.. +.+||++||-=.|.|. +.....+|.-|.+-..+-|+.+=|-.-
T Consensus 158 ~k~Al~~n-AaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiI 209 (224)
T COG2003 158 FKEALKYN-AAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHII 209 (224)
T ss_pred HHHHHHhc-chhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEE
Confidence 68889876 7899999999988653 334446888999999999988877543
No 101
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=24.23 E-value=2.4e+02 Score=28.65 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=35.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcccccc----ccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv----~l~pGes~~V~~~l~~ 586 (628)
.++++|+|+++.. -.||..+.......++ -|-=+ .|+||+.++++|....
T Consensus 45 ~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~-----pFivtPPlfRlep~~~~~lRI~~~~ 98 (237)
T PRK15224 45 GATLSVSNPQNYP--ILVQSSVKAADKSSPA-----PFLVMPPLFRLEANQQSQLRIVRTG 98 (237)
T ss_pred EEEEEEEcCCCCc--EEEEEEEeCCCCCccC-----CEEECCCeEEECCCCceEEEEEECC
Confidence 4788889999764 9999999865432111 12222 3899999999998764
No 102
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=23.97 E-value=1.9e+02 Score=29.07 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=34.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhcccccc-ccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV-HVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~kv-~l~pGes~~V~~~l~~ 586 (628)
.++++|+|+|+. .-.||..+...... ..+...+.-.=-+ .|+||+++.++|-...
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~ 95 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTG 95 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECC
Confidence 578889999986 68999998753211 0111112222222 3899999999976543
No 103
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=23.96 E-value=2.3e+02 Score=31.46 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=36.2
Q ss_pred Hhh-cCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceee
Q 006863 333 AAR-QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 392 (628)
Q Consensus 333 ~a~-~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~~g~P~~ 392 (628)
... .+|..||++. +... .+..|.+ .-..+.++|+++.+ .+||.|+|+++..|+.
T Consensus 140 VI~dhstIgivVtT-Dgsi--~dI~Re~--y~~aEe~~i~eLk~-~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 140 VIQEHSTIGVVVTT-DGTI--TDIPRED--YVEAEERVIEELKE-LNKPFIILLNSTHPYH 194 (492)
T ss_pred HHHhcCcEEEEEEc-CCCc--ccccccc--chHHHHHHHHHHHh-cCCCEEEEEECcCCCC
Confidence 344 8999998872 1111 0122332 34667889999875 6899999999988874
No 104
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=23.68 E-value=47 Score=34.86 Aligned_cols=55 Identities=27% Similarity=0.386 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEEeCCCccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
+..+.||++|++.|... .+|.+|.++ -..- .++++++.+.+ ...++++. +||.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~-p~~~vivv-sNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSG-FDGIFLVA-TNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhC-CCeEEEEe-CCHHHH
Confidence 46789999999988643 345565432 1222 34455665543 34554444 599876
No 105
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=23.47 E-value=1.6e+02 Score=27.86 Aligned_cols=52 Identities=21% Similarity=0.061 Sum_probs=31.8
Q ss_pred cHHHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHH--hcCCCEEEEEecC
Q 006863 326 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK--ASRGPVVLVLMCG 388 (628)
Q Consensus 326 ~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~--~~~k~vVvVl~~g 388 (628)
.+.+..+....||.+|++.=.. +...|+.-+.+|+.+.. -.+||++++..+|
T Consensus 58 ~~~~~~~~i~~AD~iIi~tP~Y-----------~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g 111 (174)
T TIGR03566 58 DAERILQAIESADLLVVGSPVY-----------RGSYTGLFKHLFDLVDPNALIGKPVLLAATGG 111 (174)
T ss_pred HHHHHHHHHHHCCEEEEECCcC-----------cCcCcHHHHHHHHhcCHhHhCCCEEEEEEecC
Confidence 4566777888999999865221 23456666667766431 1356766655443
No 106
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=22.98 E-value=73 Score=21.35 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=12.6
Q ss_pred HHHHHHHcCCCceEEecc
Q 006863 98 PFKACVVEGKVASVMCSY 115 (628)
Q Consensus 98 pF~~ai~~g~~~~vM~sy 115 (628)
-++.++..| +.+||+-|
T Consensus 12 ~~~~~l~~G-VDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLG-VDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT--SEEEES-
T ss_pred HHHHHHHcC-CCEeeCCC
Confidence 468888888 99999965
No 107
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=22.36 E-value=3.1e+02 Score=22.83 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=40.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeC
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 595 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~ 595 (628)
.+++.+++.|.+.....-.+++.+..+.... ... .-..+.+..+....+.+++.. .....|+.
T Consensus 19 ~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 19 KVSVEVEVRNESNKPLDVTVRVRLFDPEGKK--VVT--QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEETTSEE--EEE--EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEeCCCCcEEEEEEEEEECCCCCE--EEE--eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 5777777799999999999999888776431 101 112334566666666555555 45677776
No 108
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=22.20 E-value=1e+02 Score=35.99 Aligned_cols=49 Identities=24% Similarity=0.223 Sum_probs=35.5
Q ss_pred HHHHhhcCCCcEEEcchhhhhhhhccccccCChHHHHHHHHHcCCCcCCc
Q 006863 132 NTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 181 (628)
Q Consensus 132 ~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~~ 181 (628)
+=|++=+||+|.|+||.++.+.+.-. ....++++.+.---.-|.|+.|.
T Consensus 72 gGlH~f~~w~g~ilTDSGgfQv~s~g-~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 72 KGIHSLIGFDGPIMTDSGSFQLSVYG-DVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred CChHHHhCCCCCeEecCCceeeeecC-ccccCHHHHHHHHHHhCCCEEEE
Confidence 34567789999999999998765433 23457777665555679999873
No 109
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=21.96 E-value=2.5e+02 Score=30.52 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=26.5
Q ss_pred EEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecC
Q 006863 531 LHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 531 vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 586 (628)
+.+.|+|.|..... ..+| .. . ++-=+|=.|.||.|.+++++|.+
T Consensus 53 ~~f~V~N~~~~~~E--fe~~--~~------~--~vv~e~EnIaPG~s~~l~~~L~p 96 (375)
T PRK10378 53 TQFIIQNHSQKALE--WEIL--KG------V--MVVEERENIAPGFSQKMTANLQP 96 (375)
T ss_pred EEEEEEeCCCCcce--EEee--cc------c--cccccccccCCCCceEEEEecCC
Confidence 67888999988733 2222 11 0 10001235899999988877754
No 110
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=21.94 E-value=2.2e+02 Score=24.98 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=29.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhh-ccccccccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQL-IGFKKVHVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L-~gF~kv~l~pGes~~V~~~l~~ 586 (628)
.-+++|+|...-+- .+++=+..+. --+| .+...+.|+|||++++.|.|..
T Consensus 34 ~Y~lkl~Nkt~~~~--~~~i~~~g~~-----~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQPR--TYTISVEGLP-----GAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS-E--EEEEEEES-S-----S-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCCE--EEEEEEecCC-----CeEEECCCcceEECCCCEEEEEEEEEE
Confidence 46788899988762 3445444432 3344 4667888999999999998876
No 111
>PTZ00325 malate dehydrogenase; Provisional
Probab=21.80 E-value=61 Score=34.42 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=33.2
Q ss_pred HHHhhcCCEEEEEEeCCCccccccCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEecCceeee
Q 006863 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (628)
Q Consensus 331 ~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~---~q~~li~~v~~~~~k~vVvVl~~g~P~~l 393 (628)
.+..+.+|+||++.|... .++.+|.++ |.. .-.++++++.+...+ -|+++. .+|++.
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~-~iviv~-SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAPK-AIVGIV-SNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCC-eEEEEe-cCcHHH
Confidence 456789999999998643 223344333 222 234566677665443 444433 589887
No 112
>PRK00170 azoreductase; Reviewed
Probab=21.57 E-value=1.8e+02 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=26.8
Q ss_pred cHHHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHH
Q 006863 326 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 374 (628)
Q Consensus 326 ~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~ 374 (628)
...+..+....||.+|++.=.. ++.+|+.-+.+|+.+.
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP~y-----------~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAPMY-----------NFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHHHHHHHHHCCEEEEeeccc-----------ccCCcHHHHHHHHhhe
Confidence 3456677888999999875221 3567777777888775
No 113
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=21.27 E-value=1.6e+02 Score=25.35 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCEEEEEEeCCCccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 006863 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 386 (628)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~li~~v~~~~~k~vVvVl~ 386 (628)
....+....+|++|+++-.+. .+.....++++.+. .++|+++|++
T Consensus 71 ~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N 115 (116)
T PF01926_consen 71 RKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN 115 (116)
T ss_dssp HHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence 345566788999999985321 12244567778874 5688888875
No 114
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=21.18 E-value=1.1e+02 Score=20.75 Aligned_cols=25 Identities=12% Similarity=0.015 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHhhhhHHHHHHhCC
Q 006863 194 GGLLREEDVNLALAYTITVQMRLGM 218 (628)
Q Consensus 194 ~G~i~~~~ld~av~RIL~~k~~~Gl 218 (628)
.|.|+.+.+-+++.||+..+.+-|-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999888764
No 115
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=21.03 E-value=37 Score=29.89 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.6
Q ss_pred ccccCcCCCCCCceeCC
Q 006863 472 VFPFGHGMSYTTFAHTL 488 (628)
Q Consensus 472 ~ypFG~GLSYTtF~~s~ 488 (628)
.|-.-||+.||+|....
T Consensus 31 ~y~~~~g~g~~~f~~~~ 47 (110)
T PF06165_consen 31 EYEVRHGFGYTRFERED 47 (110)
T ss_dssp EEEEEEESSEEEEEEEE
T ss_pred cEEEEECCCeEEEEEEe
Confidence 58899999999999764
No 116
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=20.84 E-value=5.9e+02 Score=23.64 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=14.9
Q ss_pred HHHHHHHhhcCCEEEEEEeC
Q 006863 327 IGAAEVAARQADATVLVMGL 346 (628)
Q Consensus 327 ~~~a~~~a~~aD~vIv~vg~ 346 (628)
.......+.+||+++++...
T Consensus 54 y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred HHHHHHHHhhCCEEEEEecC
Confidence 34556678899999998753
No 117
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=20.61 E-value=3.3e+02 Score=27.36 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcccccc----ccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv----~l~pGes~~V~~~l~~ 586 (628)
.++++|+|+|+. .-.||..+.+......|.+.=.-|-=+ .|+||+.++++|....
T Consensus 35 ~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~ 93 (226)
T PRK15218 35 DITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA 93 (226)
T ss_pred EEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC
Confidence 578888999986 599999998754322221110123322 3899999999998653
No 118
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=20.21 E-value=3.3e+02 Score=27.43 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=34.3
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCC--Ccchhhccccc----cccCCCCeEEEEEEecC
Q 006863 530 GLHVDIKNTGDMAGTHTLLVFAKPPAGNW--SPNKQLIGFKK----VHVTAGALQSVRLDIHV 586 (628)
Q Consensus 530 ~vsv~VtNtG~~~G~evvQlY~~~p~~~~--~P~k~L~gF~k----v~l~pGes~~V~~~l~~ 586 (628)
.++++|+|+|+. .-.||..+....... .| |-= ..|+||++++|+|....
T Consensus 39 ~~si~i~N~~~~--p~LvQswv~~~~~~~~~~p------FivtPPlfrl~p~~~q~lRI~~~~ 93 (229)
T PRK15211 39 NISFEVTNQADQ--TYGGQVWIDNTTQGSSTVY------MVPAPPFFKVRPKEKQIIRIMKTD 93 (229)
T ss_pred eEEEEEEeCCCC--cEEEEEEEecCCCCCccCC------EEEcCCeEEECCCCceEEEEEECC
Confidence 578889999986 489999997543211 12 221 13899999999987653
No 119
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=20.16 E-value=4.3e+02 Score=22.65 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=40.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCeeEEeCCCCEEecCeEEE
Q 006863 528 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 607 (628)
Q Consensus 528 ~~~vsv~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~ 607 (628)
.+..++.|+|.+.....-.||++..... . .-..+.||+|...+ ++.-+..++.+ .+ -....|+|.
T Consensus 25 ~i~gTi~V~n~~~~~~~itV~i~~~g~~-----v------~tftV~pG~S~S~T--~~~~~sI~I~~-~~-~g~~~G~~C 89 (92)
T PF13157_consen 25 SISGTIYVYNDTGSGNPITVTILQNGTA-----V------NTFTVQPGNSRSFT--VRDFQSIQIVT-TP-TGTIEGEFC 89 (92)
T ss_pred EEEEEEEEEECCCCCCCEEEEEEECCcE-----E------eEEEECCCceEEEE--eccceEEEEEe-CC-CcEEEEEEE
Confidence 4788899999999988888998833221 1 12247999997433 32222334444 22 223458887
Q ss_pred EE
Q 006863 608 LH 609 (628)
Q Consensus 608 i~ 609 (628)
+.
T Consensus 90 ~~ 91 (92)
T PF13157_consen 90 IT 91 (92)
T ss_pred EE
Confidence 64
Done!