Query 006864
Match_columns 628
No_of_seqs 418 out of 2842
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 15:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01327 PGDH D-3-phosphoglyc 100.0 8E-113 2E-117 956.4 59.2 517 92-627 1-520 (525)
2 PRK13581 D-3-phosphoglycerate 100.0 1E-111 3E-116 947.3 59.1 517 92-627 2-521 (526)
3 KOG0068 D-3-phosphoglycerate d 100.0 2.3E-90 5E-95 705.1 32.0 398 90-491 6-406 (406)
4 PRK11790 D-3-phosphoglycerate 100.0 1.2E-76 2.5E-81 645.5 41.1 393 86-628 6-406 (409)
5 COG0111 SerA Phosphoglycerate 100.0 1.4E-73 3.1E-78 602.0 33.6 317 89-409 2-321 (324)
6 PRK15409 bifunctional glyoxyla 100.0 1.6E-70 3.5E-75 580.3 36.4 312 90-403 2-320 (323)
7 COG1052 LdhA Lactate dehydroge 100.0 5.4E-69 1.2E-73 566.8 33.7 312 90-403 2-323 (324)
8 PRK08410 2-hydroxyacid dehydro 100.0 1.2E-67 2.6E-72 556.4 35.1 299 92-396 2-311 (311)
9 PRK13243 glyoxylate reductase; 100.0 5.5E-67 1.2E-71 556.3 36.8 312 90-403 2-323 (333)
10 PRK06487 glycerate dehydrogena 100.0 3E-66 6.6E-71 547.1 34.9 303 92-402 2-317 (317)
11 PLN02306 hydroxypyruvate reduc 100.0 3.4E-65 7.3E-70 550.0 36.4 320 83-403 8-355 (386)
12 PRK06932 glycerate dehydrogena 100.0 9.9E-65 2.1E-69 534.7 32.6 273 118-396 32-314 (314)
13 PLN02928 oxidoreductase family 100.0 7.5E-64 1.6E-68 534.6 36.0 309 86-399 14-342 (347)
14 PLN03139 formate dehydrogenase 100.0 2.9E-63 6.2E-68 533.6 33.2 295 102-397 66-369 (386)
15 PRK07574 formate dehydrogenase 100.0 5.1E-63 1.1E-67 532.0 33.6 296 105-401 62-366 (385)
16 PRK08605 D-lactate dehydrogena 100.0 1.9E-60 4.2E-65 506.1 33.2 313 88-402 1-332 (332)
17 PRK12480 D-lactate dehydrogena 100.0 2.1E-60 4.5E-65 504.9 32.4 309 91-402 2-330 (330)
18 PRK15438 erythronate-4-phospha 100.0 8E-57 1.7E-61 482.1 31.5 275 91-393 1-279 (378)
19 KOG0069 Glyoxylate/hydroxypyru 100.0 5.7E-57 1.2E-61 471.1 26.2 282 120-402 50-335 (336)
20 PRK00257 erythronate-4-phospha 100.0 5.4E-56 1.2E-60 477.0 32.1 284 91-402 1-288 (381)
21 PRK15469 ghrA bifunctional gly 100.0 6.9E-56 1.5E-60 466.8 29.3 267 128-403 36-308 (312)
22 PRK06436 glycerate dehydrogena 100.0 3.4E-55 7.4E-60 459.3 31.0 283 92-403 2-290 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 1.5E-46 3.3E-51 366.1 16.8 176 195-370 1-178 (178)
24 TIGR00719 sda_beta L-serine de 100.0 2.5E-40 5.5E-45 329.7 22.4 186 417-618 21-208 (208)
25 KOG0067 Transcription factor C 100.0 7.7E-32 1.7E-36 278.9 14.4 293 107-407 49-354 (435)
26 PF00389 2-Hacid_dh: D-isomer 99.9 5.4E-22 1.2E-26 184.1 15.8 101 93-194 1-101 (133)
27 PTZ00075 Adenosylhomocysteinas 99.9 5.9E-21 1.3E-25 209.0 17.5 169 159-352 197-367 (476)
28 PRK06545 prephenate dehydrogen 99.8 2E-21 4.3E-26 209.3 4.7 322 230-618 1-350 (359)
29 TIGR02853 spore_dpaA dipicolin 99.8 3.7E-19 7.9E-24 186.1 12.6 170 127-326 51-248 (287)
30 PRK08818 prephenate dehydrogen 99.8 1.2E-18 2.7E-23 187.3 8.4 310 228-617 3-354 (370)
31 PRK08306 dipicolinate synthase 99.6 1.3E-14 2.9E-19 152.5 17.1 166 126-320 51-242 (296)
32 PLN02494 adenosylhomocysteinas 99.6 4.9E-15 1.1E-19 162.3 10.8 121 224-349 249-373 (477)
33 TIGR00936 ahcY adenosylhomocys 99.5 8.8E-14 1.9E-18 151.2 11.1 121 224-348 190-312 (406)
34 PRK13403 ketol-acid reductoiso 99.5 8.9E-14 1.9E-18 145.8 8.7 93 225-318 12-105 (335)
35 COG1760 SdaA L-serine deaminas 99.4 4.5E-16 9.8E-21 157.3 -10.7 190 419-627 55-249 (262)
36 PRK07417 arogenate dehydrogena 99.4 6.5E-13 1.4E-17 138.5 9.1 230 230-486 1-259 (279)
37 PRK05476 S-adenosyl-L-homocyst 99.4 6.3E-12 1.4E-16 137.6 16.1 211 101-331 87-312 (425)
38 PLN02256 arogenate dehydrogena 99.4 2.3E-13 5E-18 143.6 3.7 233 226-482 33-286 (304)
39 PRK07502 cyclohexadienyl dehyd 99.3 1.4E-12 3.1E-17 137.7 6.7 238 229-485 6-269 (307)
40 PLN02712 arogenate dehydrogena 99.3 4.5E-12 9.8E-17 146.5 6.8 242 223-482 363-619 (667)
41 COG0287 TyrA Prephenate dehydr 99.3 7.4E-12 1.6E-16 130.4 7.4 221 229-473 3-248 (279)
42 PRK08655 prephenate dehydrogen 99.2 7.6E-12 1.6E-16 138.4 6.7 227 230-481 1-251 (437)
43 PRK08507 prephenate dehydrogen 99.2 2.6E-11 5.6E-16 126.2 7.8 224 230-482 1-253 (275)
44 PF00670 AdoHcyase_NAD: S-aden 99.2 7.3E-11 1.6E-15 112.8 10.0 103 224-330 18-122 (162)
45 PF03446 NAD_binding_2: NAD bi 99.2 3.5E-11 7.6E-16 115.7 7.9 113 230-344 2-117 (163)
46 COG2084 MmsB 3-hydroxyisobutyr 99.2 1.2E-10 2.6E-15 121.2 10.8 123 230-352 1-128 (286)
47 PRK11559 garR tartronate semia 99.1 1.2E-10 2.6E-15 122.2 10.0 121 230-350 3-127 (296)
48 TIGR01505 tartro_sem_red 2-hyd 99.1 1.8E-10 4E-15 120.6 10.4 108 231-338 1-112 (291)
49 PRK05479 ketol-acid reductoiso 99.1 2.3E-10 5.1E-15 121.5 7.2 121 225-355 13-135 (330)
50 PLN02712 arogenate dehydrogena 99.0 3.1E-10 6.7E-15 131.4 8.2 238 227-483 50-303 (667)
51 PRK15461 NADH-dependent gamma- 99.0 8.2E-10 1.8E-14 116.3 10.5 113 230-344 2-118 (296)
52 cd00401 AdoHcyase S-adenosyl-L 99.0 9.3E-10 2E-14 120.4 10.7 104 224-331 197-302 (413)
53 PRK11199 tyrA bifunctional cho 99.0 3.2E-10 7E-15 123.2 6.6 215 228-483 97-332 (374)
54 PRK12490 6-phosphogluconate de 99.0 1.3E-09 2.8E-14 115.0 10.7 111 231-344 2-117 (299)
55 PRK14806 bifunctional cyclohex 99.0 1.1E-09 2.4E-14 128.7 10.0 212 230-464 4-244 (735)
56 PF03315 SDH_beta: Serine dehy 99.0 3.3E-10 7.1E-15 108.4 3.9 116 421-549 20-157 (157)
57 PRK09599 6-phosphogluconate de 98.9 4.4E-09 9.5E-14 111.0 11.1 112 230-344 1-117 (301)
58 PRK15059 tartronate semialdehy 98.9 6.5E-09 1.4E-13 109.4 10.3 108 231-338 2-112 (292)
59 PLN02350 phosphogluconate dehy 98.8 1.3E-08 2.8E-13 113.8 10.7 140 230-380 7-158 (493)
60 PRK15040 L-serine dehydratase 98.8 2.1E-08 4.5E-13 109.6 11.5 147 421-592 22-194 (454)
61 TIGR00465 ilvC ketol-acid redu 98.8 1.5E-08 3.3E-13 107.6 9.1 95 227-323 1-97 (314)
62 PRK05225 ketol-acid reductoiso 98.7 1.2E-08 2.5E-13 111.4 6.6 100 216-317 21-129 (487)
63 TIGR00872 gnd_rel 6-phosphoglu 98.7 4.9E-08 1.1E-12 103.0 11.0 108 230-339 1-113 (298)
64 TIGR01692 HIBADH 3-hydroxyisob 98.7 3.4E-08 7.3E-13 103.6 8.8 105 234-338 1-109 (288)
65 PLN02858 fructose-bisphosphate 98.7 6.1E-08 1.3E-12 120.3 11.6 107 229-335 324-434 (1378)
66 cd04902 ACT_3PGDH-xct C-termin 98.7 4.2E-08 9.1E-13 80.7 6.7 67 561-627 2-68 (73)
67 PLN02858 fructose-bisphosphate 98.7 5.4E-08 1.2E-12 120.7 10.7 120 228-349 3-130 (1378)
68 PRK15023 L-serine deaminase; P 98.7 7E-08 1.5E-12 105.5 10.3 146 421-592 22-194 (454)
69 PLN02545 3-hydroxybutyryl-CoA 98.7 2E-07 4.3E-12 98.0 13.2 130 230-372 5-161 (295)
70 PF07991 IlvN: Acetohydroxy ac 98.7 3.3E-08 7.3E-13 94.3 6.0 90 227-317 2-93 (165)
71 PTZ00142 6-phosphogluconate de 98.7 8.8E-08 1.9E-12 106.9 10.2 121 230-351 2-133 (470)
72 PRK08293 3-hydroxybutyryl-CoA 98.6 4.5E-07 9.7E-12 95.1 14.7 131 230-372 4-162 (287)
73 PF02153 PDH: Prephenate dehyd 98.6 3.8E-09 8.2E-14 109.2 -1.2 219 244-482 1-244 (258)
74 COG0499 SAM1 S-adenosylhomocys 98.6 8.5E-08 1.8E-12 101.0 8.7 102 225-330 205-308 (420)
75 KOG0409 Predicted dehydrogenas 98.6 1.3E-07 2.7E-12 97.8 9.3 112 227-338 33-149 (327)
76 PRK09260 3-hydroxybutyryl-CoA 98.6 4.8E-07 1E-11 94.9 13.3 131 230-372 2-159 (288)
77 cd01075 NAD_bind_Leu_Phe_Val_D 98.6 2.6E-07 5.7E-12 92.0 10.5 108 224-338 23-133 (200)
78 TIGR00873 gnd 6-phosphoglucona 98.5 2.6E-07 5.6E-12 103.2 10.2 119 231-350 1-129 (467)
79 PLN02688 pyrroline-5-carboxyla 98.5 1.1E-06 2.4E-11 90.8 13.8 102 230-335 1-109 (266)
80 PF03807 F420_oxidored: NADP o 98.5 1.6E-07 3.4E-12 81.8 6.3 88 231-321 1-96 (96)
81 TIGR00518 alaDH alanine dehydr 98.5 8.7E-07 1.9E-11 96.4 13.4 93 227-319 165-267 (370)
82 PRK14619 NAD(P)H-dependent gly 98.5 2.2E-07 4.9E-12 98.3 8.4 82 228-322 3-85 (308)
83 PRK11064 wecC UDP-N-acetyl-D-m 98.5 4.4E-07 9.5E-12 100.1 10.8 106 230-335 4-135 (415)
84 KOG1370 S-adenosylhomocysteine 98.5 3.4E-07 7.4E-12 94.3 8.5 103 225-335 210-314 (434)
85 cd04901 ACT_3PGDH C-terminal A 98.5 2.4E-07 5.1E-12 75.5 5.0 66 561-628 2-67 (69)
86 TIGR00561 pntA NAD(P) transhyd 98.4 8.3E-06 1.8E-10 91.6 18.8 177 130-319 64-284 (511)
87 PRK07066 3-hydroxybutyryl-CoA 98.4 2.8E-06 6E-11 90.6 14.1 113 230-346 8-143 (321)
88 PRK15182 Vi polysaccharide bio 98.4 1.6E-06 3.4E-11 96.0 12.5 135 230-365 7-173 (425)
89 PRK07530 3-hydroxybutyryl-CoA 98.4 2.7E-06 5.9E-11 89.3 13.3 129 230-372 5-161 (292)
90 PRK14194 bifunctional 5,10-met 98.4 6.5E-07 1.4E-11 94.1 8.2 80 223-321 153-233 (301)
91 PRK07819 3-hydroxybutyryl-CoA 98.4 4.1E-06 8.9E-11 88.0 13.3 167 230-420 6-203 (286)
92 cd01065 NAD_bind_Shikimate_DH 98.3 2.8E-06 6.1E-11 80.1 10.4 107 226-337 16-132 (155)
93 PRK07679 pyrroline-5-carboxyla 98.3 2.6E-06 5.6E-11 89.0 11.1 104 228-335 2-113 (279)
94 PRK06129 3-hydroxyacyl-CoA deh 98.3 4.4E-06 9.4E-11 88.6 12.1 131 230-372 3-160 (308)
95 PRK05808 3-hydroxybutyryl-CoA 98.3 6.5E-06 1.4E-10 86.0 13.2 130 230-372 4-160 (282)
96 PRK12491 pyrroline-5-carboxyla 98.3 1.6E-06 3.5E-11 90.4 8.2 102 230-335 3-111 (272)
97 PRK14189 bifunctional 5,10-met 98.3 2E-06 4.4E-11 89.8 8.5 81 223-322 152-233 (285)
98 PRK13302 putative L-aspartate 98.3 2.7E-06 5.8E-11 88.7 9.2 106 228-338 5-117 (271)
99 cd04903 ACT_LSD C-terminal ACT 98.3 2.5E-06 5.4E-11 68.9 7.1 68 560-627 1-68 (71)
100 PRK08268 3-hydroxy-acyl-CoA de 98.3 9.4E-06 2E-10 91.8 13.8 129 230-372 8-164 (507)
101 PRK06035 3-hydroxyacyl-CoA deh 98.3 1.3E-05 2.9E-10 84.1 14.1 113 230-347 4-146 (291)
102 cd04879 ACT_3PGDH-like ACT_3PG 98.3 2.6E-06 5.6E-11 68.6 6.7 68 561-628 2-69 (71)
103 TIGR03026 NDP-sugDHase nucleot 98.2 1.1E-05 2.5E-10 88.8 13.8 102 230-331 1-132 (411)
104 TIGR00720 sda_mono L-serine de 98.2 4.7E-06 1E-10 91.5 10.4 135 437-592 41-194 (455)
105 PRK09424 pntA NAD(P) transhydr 98.2 3.9E-05 8.4E-10 86.4 17.7 185 130-319 65-285 (509)
106 PF01842 ACT: ACT domain; Int 98.2 1.4E-06 3.1E-11 69.9 4.3 65 559-623 1-66 (66)
107 PRK07531 bifunctional 3-hydrox 98.2 1.3E-05 2.7E-10 90.6 13.4 104 230-335 5-130 (495)
108 PRK06130 3-hydroxybutyryl-CoA 98.2 1.7E-05 3.6E-10 84.0 13.5 110 230-341 5-136 (311)
109 PRK14188 bifunctional 5,10-met 98.2 4.4E-06 9.4E-11 87.9 8.2 81 223-322 152-233 (296)
110 PRK14618 NAD(P)H-dependent gly 98.2 8.6E-06 1.9E-10 86.9 10.5 101 229-335 4-123 (328)
111 cd01080 NAD_bind_m-THF_DH_Cycl 98.1 9.8E-06 2.1E-10 78.7 9.0 90 225-340 40-130 (168)
112 PRK14179 bifunctional 5,10-met 98.1 7.1E-06 1.5E-10 85.7 8.4 79 223-320 152-231 (284)
113 PRK00094 gpsA NAD(P)H-dependen 98.1 7.3E-06 1.6E-10 86.8 7.9 92 230-323 2-109 (325)
114 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.1 4.2E-05 9.2E-10 86.4 14.3 117 230-351 6-149 (503)
115 PRK06476 pyrroline-5-carboxyla 98.0 1.3E-05 2.7E-10 82.7 8.0 100 231-336 2-108 (258)
116 PRK11880 pyrroline-5-carboxyla 98.0 6.7E-05 1.5E-09 77.5 13.4 104 230-339 3-113 (267)
117 PRK15057 UDP-glucose 6-dehydro 98.0 3.3E-05 7.2E-10 84.6 11.0 129 230-365 1-160 (388)
118 PRK14175 bifunctional 5,10-met 98.0 1.8E-05 3.8E-10 82.9 8.3 80 223-321 152-232 (286)
119 PRK07680 late competence prote 98.0 2.8E-05 6E-10 81.0 9.4 100 231-334 2-109 (273)
120 PF10727 Rossmann-like: Rossma 98.0 1.1E-05 2.3E-10 74.9 5.5 106 229-338 10-121 (127)
121 cd04878 ACT_AHAS N-terminal AC 98.0 1.4E-05 3E-10 64.6 5.6 69 559-627 1-71 (72)
122 COG1023 Gnd Predicted 6-phosph 98.0 5.2E-05 1.1E-09 76.4 10.6 115 230-347 1-120 (300)
123 TIGR01724 hmd_rel H2-forming N 98.0 5.3E-05 1.1E-09 79.9 11.2 106 241-350 32-145 (341)
124 PRK08229 2-dehydropantoate 2-r 97.9 3.7E-05 7.9E-10 82.3 10.0 107 230-340 3-127 (341)
125 COG2085 Predicted dinucleotide 97.9 2.7E-05 6E-10 77.5 8.1 88 230-320 2-94 (211)
126 PRK06928 pyrroline-5-carboxyla 97.9 4.7E-05 1E-09 79.6 10.2 105 230-338 2-115 (277)
127 TIGR01915 npdG NADPH-dependent 97.9 5.2E-05 1.1E-09 76.4 10.1 91 230-323 1-105 (219)
128 KOG2380 Prephenate dehydrogena 97.9 5.3E-05 1.1E-09 79.6 9.9 137 230-370 53-192 (480)
129 cd05191 NAD_bind_amino_acid_DH 97.9 5.7E-05 1.2E-09 64.9 8.4 67 225-319 19-86 (86)
130 COG0059 IlvC Ketol-acid reduct 97.9 2.6E-05 5.6E-10 81.1 7.2 88 226-314 15-104 (338)
131 PF01488 Shikimate_DH: Shikima 97.8 1.3E-05 2.9E-10 74.8 4.0 94 226-322 9-112 (135)
132 PRK05472 redox-sensing transcr 97.8 1.9E-05 4.1E-10 79.4 4.1 127 191-335 64-201 (213)
133 cd04889 ACT_PDH-BS-like C-term 97.8 5.2E-05 1.1E-09 59.5 5.6 45 563-608 3-47 (56)
134 PRK13304 L-aspartate dehydroge 97.8 8.9E-05 1.9E-09 77.1 8.8 103 230-337 2-113 (265)
135 PF02882 THF_DHG_CYH_C: Tetrah 97.8 7.1E-05 1.5E-09 72.1 7.4 82 223-323 30-112 (160)
136 TIGR01546 GAPDH-II_archae glyc 97.7 9.9E-05 2.1E-09 79.0 9.1 85 232-319 1-108 (333)
137 PRK10792 bifunctional 5,10-met 97.7 0.00012 2.6E-09 76.6 9.4 78 223-319 153-231 (285)
138 TIGR01035 hemA glutamyl-tRNA r 97.7 9.1E-05 2E-09 82.0 8.8 97 226-325 177-283 (417)
139 cd05311 NAD_bind_2_malic_enz N 97.7 0.00066 1.4E-08 69.0 14.2 131 224-371 20-169 (226)
140 PF03721 UDPG_MGDP_dh_N: UDP-g 97.7 0.00012 2.6E-09 72.2 8.4 136 230-365 1-171 (185)
141 cd05212 NAD_bind_m-THF_DH_Cycl 97.7 0.00023 5E-09 67.1 9.9 81 223-322 22-103 (140)
142 PRK09287 6-phosphogluconate de 97.7 0.00011 2.4E-09 82.1 9.1 139 240-390 1-149 (459)
143 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00023 4.9E-09 70.4 10.0 98 215-319 48-156 (197)
144 PRK07634 pyrroline-5-carboxyla 97.7 0.00017 3.6E-09 73.5 9.2 104 228-336 3-114 (245)
145 COG0345 ProC Pyrroline-5-carbo 97.7 0.00027 5.9E-09 73.4 10.6 102 230-339 2-113 (266)
146 PF01262 AlaDh_PNT_C: Alanine 97.7 0.00011 2.3E-09 71.2 7.1 94 226-319 17-139 (168)
147 PF01210 NAD_Gly3P_dh_N: NAD-d 97.6 0.00011 2.4E-09 70.2 7.0 89 231-321 1-105 (157)
148 cd05213 NAD_bind_Glutamyl_tRNA 97.6 0.00015 3.3E-09 77.1 8.6 93 227-321 176-275 (311)
149 PRK06349 homoserine dehydrogen 97.6 0.0051 1.1E-07 68.4 20.8 67 559-626 349-418 (426)
150 PRK12921 2-dehydropantoate 2-r 97.6 0.00023 5E-09 74.7 9.6 108 230-340 1-122 (305)
151 PRK14176 bifunctional 5,10-met 97.6 0.00017 3.7E-09 75.5 8.4 79 223-320 158-237 (287)
152 cd04874 ACT_Af1403 N-terminal 97.6 0.00015 3.2E-09 58.7 6.2 66 561-627 3-69 (72)
153 PRK14178 bifunctional 5,10-met 97.6 0.00015 3.2E-09 75.7 7.5 79 223-320 146-225 (279)
154 PRK14191 bifunctional 5,10-met 97.6 0.00017 3.8E-09 75.4 7.9 80 223-321 151-231 (285)
155 PRK00045 hemA glutamyl-tRNA re 97.6 0.0002 4.3E-09 79.4 8.8 91 226-319 179-280 (423)
156 PRK06522 2-dehydropantoate 2-r 97.6 0.00051 1.1E-08 71.9 11.1 107 230-340 1-120 (304)
157 PRK14192 bifunctional 5,10-met 97.5 0.00029 6.2E-09 74.0 8.9 80 223-321 153-233 (283)
158 PF02737 3HCDH_N: 3-hydroxyacy 97.5 0.0002 4.4E-09 70.2 7.2 127 231-368 1-154 (180)
159 PLN00203 glutamyl-tRNA reducta 97.5 0.0002 4.4E-09 81.0 8.0 92 226-320 263-370 (519)
160 COG0677 WecC UDP-N-acetyl-D-ma 97.5 0.0015 3.3E-08 70.5 13.5 142 230-378 10-189 (436)
161 PTZ00431 pyrroline carboxylate 97.5 0.00038 8.2E-09 72.1 8.5 123 229-370 3-131 (260)
162 PRK14170 bifunctional 5,10-met 97.5 0.00059 1.3E-08 71.4 9.8 81 223-322 151-232 (284)
163 cd04883 ACT_AcuB C-terminal AC 97.5 0.00036 7.8E-09 57.2 6.6 62 560-621 3-64 (72)
164 PRK14183 bifunctional 5,10-met 97.4 0.00038 8.3E-09 72.7 8.3 79 223-320 151-230 (281)
165 PRK12557 H(2)-dependent methyl 97.4 0.00042 9.1E-09 74.7 8.8 93 241-334 32-132 (342)
166 PRK14982 acyl-ACP reductase; P 97.4 0.0012 2.5E-08 71.1 11.9 98 223-326 149-253 (340)
167 PRK14171 bifunctional 5,10-met 97.4 0.00058 1.3E-08 71.6 9.3 78 223-319 153-231 (288)
168 cd04882 ACT_Bt0572_2 C-termina 97.4 0.00033 7.1E-09 56.0 5.9 59 561-621 2-60 (65)
169 PF13291 ACT_4: ACT domain; PD 97.4 0.00022 4.7E-09 60.1 4.9 67 561-627 9-78 (80)
170 PRK00258 aroE shikimate 5-dehy 97.4 0.00042 9.2E-09 72.5 7.6 96 225-320 119-222 (278)
171 PRK06249 2-dehydropantoate 2-r 97.4 0.0035 7.6E-08 66.6 14.6 108 230-341 6-127 (313)
172 PRK14186 bifunctional 5,10-met 97.4 0.00061 1.3E-08 71.8 8.6 81 223-322 152-233 (297)
173 PRK14190 bifunctional 5,10-met 97.4 0.00071 1.5E-08 70.9 9.0 82 222-322 151-233 (284)
174 PRK14169 bifunctional 5,10-met 97.3 0.00066 1.4E-08 71.0 8.6 79 223-320 150-229 (282)
175 cd04908 ACT_Bt0572_1 N-termina 97.3 0.00048 1E-08 56.0 6.0 57 561-621 4-60 (66)
176 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.00064 1.4E-08 69.2 8.1 106 225-338 27-153 (227)
177 PF03720 UDPG_MGDP_dh_C: UDP-g 97.3 0.00075 1.6E-08 60.4 7.4 79 240-319 18-101 (106)
178 PRK11152 ilvM acetolactate syn 97.3 0.00072 1.6E-08 57.1 6.7 70 558-627 3-73 (76)
179 PRK11861 bifunctional prephena 97.3 9E-05 2E-09 86.8 1.7 176 287-482 1-196 (673)
180 cd01078 NAD_bind_H4MPT_DH NADP 97.3 0.0015 3.4E-08 64.3 10.2 97 224-324 23-134 (194)
181 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.3 0.00036 7.8E-09 57.3 4.8 68 560-627 2-72 (79)
182 PRK06737 acetolactate synthase 97.3 0.00051 1.1E-08 58.0 5.6 69 559-627 3-73 (76)
183 PLN02516 methylenetetrahydrofo 97.3 0.0009 1.9E-08 70.6 8.8 79 223-320 161-240 (299)
184 PRK14166 bifunctional 5,10-met 97.2 0.00099 2.2E-08 69.7 8.5 78 223-319 151-229 (282)
185 PRK08178 acetolactate synthase 97.2 0.0008 1.7E-08 59.1 6.5 71 557-627 7-78 (96)
186 PLN02897 tetrahydrofolate dehy 97.2 0.00087 1.9E-08 71.7 8.1 79 223-320 208-287 (345)
187 PRK14177 bifunctional 5,10-met 97.2 0.0011 2.3E-08 69.5 8.5 79 223-320 153-232 (284)
188 cd05313 NAD_bind_2_Glu_DH NAD( 97.2 0.01 2.2E-07 61.4 15.5 108 224-338 33-171 (254)
189 PRK06444 prephenate dehydrogen 97.2 0.0012 2.7E-08 65.7 8.5 124 230-416 1-129 (197)
190 PLN02616 tetrahydrofolate dehy 97.2 0.00096 2.1E-08 71.7 8.2 79 223-320 225-304 (364)
191 PRK14181 bifunctional 5,10-met 97.2 0.0011 2.4E-08 69.5 8.5 80 223-321 147-231 (287)
192 PRK08577 hypothetical protein; 97.2 0.0023 4.9E-08 59.9 9.8 70 558-627 56-129 (136)
193 COG0686 Ald Alanine dehydrogen 97.2 0.00084 1.8E-08 70.3 7.5 126 227-371 166-303 (371)
194 PRK13562 acetolactate synthase 97.2 0.00076 1.7E-08 57.8 5.9 69 559-627 3-74 (84)
195 PRK14173 bifunctional 5,10-met 97.2 0.0012 2.6E-08 69.2 8.6 81 223-322 149-230 (287)
196 PRK14187 bifunctional 5,10-met 97.2 0.0012 2.6E-08 69.5 8.5 79 223-320 154-233 (294)
197 PRK14172 bifunctional 5,10-met 97.2 0.0013 2.8E-08 68.7 8.6 78 223-319 152-230 (278)
198 PRK06141 ornithine cyclodeamin 97.2 0.0017 3.7E-08 69.2 9.6 84 228-318 124-217 (314)
199 PLN02353 probable UDP-glucose 97.2 0.0076 1.6E-07 67.8 15.2 133 230-365 2-176 (473)
200 PRK14180 bifunctional 5,10-met 97.2 0.0013 2.8E-08 68.9 8.4 78 223-319 152-230 (282)
201 PRK14182 bifunctional 5,10-met 97.1 0.0014 3.1E-08 68.5 8.5 79 223-320 151-230 (282)
202 PF13710 ACT_5: ACT domain; PD 97.1 0.0011 2.4E-08 53.9 5.9 61 567-627 1-63 (63)
203 TIGR02371 ala_DH_arch alanine 97.1 0.0021 4.5E-08 68.9 9.5 87 229-321 128-224 (325)
204 PRK14031 glutamate dehydrogena 97.1 0.0039 8.4E-08 69.3 11.6 109 224-338 223-361 (444)
205 PRK14193 bifunctional 5,10-met 97.0 0.0021 4.4E-08 67.4 8.5 111 223-374 152-265 (284)
206 PF13241 NAD_binding_7: Putati 97.0 0.00047 1E-08 61.3 3.1 87 225-319 3-91 (103)
207 PRK09414 glutamate dehydrogena 97.0 0.0058 1.3E-07 68.0 12.0 108 224-338 227-361 (445)
208 cd04888 ACT_PheB-BS C-terminal 97.0 0.0018 4E-08 53.5 6.2 66 561-627 3-72 (76)
209 TIGR00507 aroE shikimate 5-deh 97.0 0.0035 7.6E-08 65.2 9.8 104 227-335 115-228 (270)
210 PRK14184 bifunctional 5,10-met 97.0 0.002 4.4E-08 67.6 7.8 78 223-319 151-233 (286)
211 TIGR01763 MalateDH_bact malate 97.0 0.0038 8.2E-08 66.3 10.1 113 230-344 2-147 (305)
212 PRK00194 hypothetical protein; 97.0 0.00077 1.7E-08 58.2 4.0 64 558-623 3-70 (90)
213 PRK14030 glutamate dehydrogena 97.0 0.018 3.9E-07 64.0 15.5 108 224-338 223-361 (445)
214 TIGR01921 DAP-DH diaminopimela 97.0 0.0024 5.2E-08 68.2 8.3 105 230-339 4-115 (324)
215 PRK07340 ornithine cyclodeamin 96.9 0.0031 6.8E-08 66.9 9.1 87 228-321 124-219 (304)
216 TIGR00119 acolac_sm acetolacta 96.9 0.0016 3.4E-08 62.6 6.1 69 559-627 2-72 (157)
217 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.014 3.1E-07 59.0 13.3 106 225-338 19-144 (217)
218 COG0190 FolD 5,10-methylene-te 96.9 0.0022 4.7E-08 66.8 7.4 113 222-374 149-262 (283)
219 PRK11895 ilvH acetolactate syn 96.9 0.0017 3.6E-08 62.7 6.0 69 559-627 3-73 (161)
220 PRK14185 bifunctional 5,10-met 96.9 0.0031 6.8E-08 66.3 8.5 79 223-320 151-234 (293)
221 PRK14174 bifunctional 5,10-met 96.9 0.0026 5.7E-08 67.1 7.9 79 223-320 153-236 (295)
222 cd04887 ACT_MalLac-Enz ACT_Mal 96.9 0.0031 6.7E-08 52.0 6.7 64 561-625 2-68 (74)
223 PRK14167 bifunctional 5,10-met 96.8 0.0038 8.3E-08 65.8 8.5 79 223-320 151-234 (297)
224 PRK09310 aroDE bifunctional 3- 96.8 0.0025 5.5E-08 71.8 7.3 70 225-294 328-401 (477)
225 PRK14168 bifunctional 5,10-met 96.8 0.0041 8.8E-08 65.7 8.3 81 223-322 155-240 (297)
226 PRK13940 glutamyl-tRNA reducta 96.8 0.004 8.7E-08 68.9 8.7 89 226-319 178-273 (414)
227 PLN02477 glutamate dehydrogena 96.8 0.045 9.8E-07 60.5 16.7 107 224-338 201-328 (410)
228 PTZ00117 malate dehydrogenase; 96.8 0.0059 1.3E-07 65.3 9.6 115 227-342 3-147 (319)
229 PRK11730 fadB multifunctional 96.8 0.012 2.6E-07 69.6 13.0 113 230-347 314-453 (715)
230 COG0373 HemA Glutamyl-tRNA red 96.8 0.0045 9.7E-08 68.0 8.5 92 226-320 175-275 (414)
231 COG0362 Gnd 6-phosphogluconate 96.7 0.029 6.3E-07 60.7 14.2 160 230-401 4-173 (473)
232 TIGR02437 FadB fatty oxidation 96.7 0.015 3.2E-07 68.8 13.0 113 230-347 314-453 (714)
233 CHL00100 ilvH acetohydroxyacid 96.7 0.0021 4.6E-08 62.7 5.0 69 559-627 3-73 (174)
234 TIGR01470 cysG_Nterm siroheme 96.6 0.0045 9.8E-08 62.1 7.0 90 225-319 5-100 (205)
235 TIGR03376 glycerol3P_DH glycer 96.6 0.0063 1.4E-07 65.7 8.6 89 231-321 1-118 (342)
236 PF01408 GFO_IDH_MocA: Oxidore 96.6 0.0041 8.9E-08 55.9 6.1 63 231-293 2-72 (120)
237 cd04875 ACT_F4HF-DF N-terminal 96.6 0.0051 1.1E-07 51.1 6.0 49 561-609 2-50 (74)
238 cd04869 ACT_GcvR_2 ACT domains 96.6 0.0066 1.4E-07 50.9 6.8 61 561-621 2-69 (81)
239 TIGR02992 ectoine_eutC ectoine 96.6 0.0095 2.1E-07 63.9 9.6 85 229-319 129-224 (326)
240 PRK06718 precorrin-2 dehydroge 96.6 0.0061 1.3E-07 60.9 7.5 90 224-319 5-100 (202)
241 TIGR02441 fa_ox_alpha_mit fatt 96.6 0.017 3.8E-07 68.4 12.5 113 230-347 336-475 (737)
242 PRK14620 NAD(P)H-dependent gly 96.6 0.0061 1.3E-07 65.0 7.9 90 231-322 2-109 (326)
243 cd04893 ACT_GcvR_1 ACT domains 96.6 0.0045 9.8E-08 52.1 5.5 46 561-608 4-49 (77)
244 PRK08618 ornithine cyclodeamin 96.6 0.0095 2.1E-07 63.8 9.3 87 228-321 126-223 (325)
245 COG1064 AdhP Zn-dependent alco 96.5 0.0076 1.6E-07 64.7 8.3 64 229-292 167-238 (339)
246 PRK11154 fadJ multifunctional 96.5 0.021 4.4E-07 67.6 12.6 113 230-347 310-450 (708)
247 cd04909 ACT_PDH-BS C-terminal 96.5 0.0066 1.4E-07 49.4 6.1 62 559-620 2-64 (69)
248 smart00859 Semialdhyde_dh Semi 96.5 0.0054 1.2E-07 55.8 6.2 88 231-320 1-100 (122)
249 PRK13301 putative L-aspartate 96.5 0.011 2.4E-07 61.3 9.1 101 230-335 3-112 (267)
250 TIGR02354 thiF_fam2 thiamine b 96.5 0.0048 1E-07 61.6 6.2 92 225-317 17-143 (200)
251 TIGR02440 FadJ fatty oxidation 96.5 0.022 4.8E-07 67.2 12.6 113 230-347 305-445 (699)
252 PF02558 ApbA: Ketopantoate re 96.4 0.0031 6.6E-08 59.2 4.1 108 232-342 1-123 (151)
253 PRK06046 alanine dehydrogenase 96.4 0.013 2.7E-07 63.0 9.1 85 229-320 129-224 (326)
254 PRK12549 shikimate 5-dehydroge 96.4 0.012 2.5E-07 62.0 8.7 69 226-294 124-203 (284)
255 cd04870 ACT_PSP_1 CT domains f 96.4 0.0082 1.8E-07 50.1 6.0 46 561-608 2-47 (75)
256 COG2150 Predicted regulator of 96.4 0.0065 1.4E-07 57.8 5.9 64 564-627 101-164 (167)
257 PRK12439 NAD(P)H-dependent gly 96.4 0.0067 1.5E-07 65.4 6.9 90 230-322 8-114 (341)
258 cd04884 ACT_CBS C-terminal ACT 96.4 0.0074 1.6E-07 49.8 5.6 60 562-621 3-66 (72)
259 PTZ00345 glycerol-3-phosphate 96.4 0.012 2.6E-07 64.1 8.7 90 230-321 12-131 (365)
260 KOG0023 Alcohol dehydrogenase, 96.4 0.012 2.7E-07 62.1 8.4 89 228-319 181-279 (360)
261 cd04886 ACT_ThrD-II-like C-ter 96.4 0.0074 1.6E-07 48.5 5.5 58 563-620 3-66 (73)
262 TIGR00670 asp_carb_tr aspartat 96.3 0.085 1.8E-06 56.1 14.8 93 226-319 147-263 (301)
263 COG0334 GdhA Glutamate dehydro 96.3 0.016 3.5E-07 63.2 9.4 108 224-338 202-330 (411)
264 PRK01713 ornithine carbamoyltr 96.3 0.058 1.3E-06 58.1 13.6 94 226-319 153-275 (334)
265 COG4747 ACT domain-containing 96.3 0.022 4.8E-07 51.6 8.5 114 476-620 15-128 (142)
266 PRK01710 murD UDP-N-acetylmura 96.3 0.022 4.8E-07 63.8 10.6 108 227-335 12-141 (458)
267 PRK00676 hemA glutamyl-tRNA re 96.3 0.014 2.9E-07 62.9 8.4 90 226-319 171-261 (338)
268 PRK00779 ornithine carbamoyltr 96.3 0.061 1.3E-06 57.2 13.3 127 172-319 116-265 (304)
269 COG0240 GpsA Glycerol-3-phosph 96.3 0.0087 1.9E-07 63.8 6.8 119 230-350 2-146 (329)
270 cd04876 ACT_RelA-SpoT ACT dom 96.3 0.0084 1.8E-07 46.7 5.2 64 563-627 3-69 (71)
271 PRK08291 ectoine utilization p 96.2 0.018 3.8E-07 61.9 9.0 85 229-319 132-227 (330)
272 PRK06719 precorrin-2 dehydroge 96.2 0.015 3.3E-07 55.8 7.7 69 223-292 7-79 (157)
273 TIGR03026 NDP-sugDHase nucleot 96.2 0.021 4.6E-07 63.0 9.8 89 226-318 310-409 (411)
274 PF00208 ELFV_dehydrog: Glutam 96.2 0.015 3.3E-07 59.9 8.1 106 226-338 29-164 (244)
275 PTZ00079 NADP-specific glutama 96.2 0.052 1.1E-06 60.4 12.7 109 224-338 232-370 (454)
276 PF02423 OCD_Mu_crystall: Orni 96.2 0.012 2.6E-07 62.8 7.2 89 230-322 129-227 (313)
277 PRK13303 L-aspartate dehydroge 96.1 0.021 4.5E-07 59.5 8.8 102 230-336 2-112 (265)
278 TIGR00658 orni_carb_tr ornithi 96.1 0.1 2.2E-06 55.6 14.0 93 227-319 146-264 (304)
279 cd04926 ACT_ACR_4 C-terminal 96.1 0.02 4.3E-07 47.5 6.9 59 560-620 3-65 (72)
280 PRK06823 ornithine cyclodeamin 96.1 0.025 5.4E-07 60.5 9.4 86 229-320 128-223 (315)
281 PRK13814 pyrB aspartate carbam 96.1 0.081 1.7E-06 56.5 13.2 63 227-289 155-223 (310)
282 COG1748 LYS9 Saccharopine dehy 96.1 0.019 4.2E-07 62.8 8.6 88 230-323 2-103 (389)
283 cd00650 LDH_MDH_like NAD-depen 96.1 0.015 3.2E-07 60.3 7.4 114 232-345 1-148 (263)
284 PRK06199 ornithine cyclodeamin 96.1 0.02 4.3E-07 62.8 8.7 89 229-320 155-260 (379)
285 PF13740 ACT_6: ACT domain; PD 96.1 0.0052 1.1E-07 51.5 3.3 45 563-607 7-51 (76)
286 COG1712 Predicted dinucleotide 96.1 0.019 4.2E-07 57.8 7.7 94 230-328 1-100 (255)
287 COG0026 PurK Phosphoribosylami 96.1 0.011 2.4E-07 63.5 6.4 61 229-289 1-68 (375)
288 PF00185 OTCace: Aspartate/orn 96.1 0.043 9.4E-07 52.7 9.9 92 228-319 1-120 (158)
289 cd04872 ACT_1ZPV ACT domain pr 96.0 0.0081 1.8E-07 51.7 4.3 60 560-621 3-66 (88)
290 PRK00683 murD UDP-N-acetylmura 96.0 0.021 4.6E-07 63.1 8.4 107 229-335 3-126 (418)
291 PRK06223 malate dehydrogenase; 96.0 0.031 6.6E-07 59.2 9.2 62 230-292 3-79 (307)
292 PRK02255 putrescine carbamoylt 96.0 0.13 2.7E-06 55.6 13.9 64 226-289 151-228 (338)
293 cd04877 ACT_TyrR N-terminal AC 95.9 0.0095 2E-07 49.5 4.1 64 561-627 3-67 (74)
294 COG1250 FadB 3-hydroxyacyl-CoA 95.9 0.14 2.9E-06 54.6 13.7 116 229-349 3-145 (307)
295 PLN02353 probable UDP-glucose 95.9 0.039 8.5E-07 62.2 10.3 101 226-330 321-456 (473)
296 PLN02527 aspartate carbamoyltr 95.9 0.19 4.1E-06 53.6 14.9 92 226-318 148-265 (306)
297 PRK03515 ornithine carbamoyltr 95.8 0.093 2E-06 56.6 12.0 65 226-290 153-232 (336)
298 PRK04284 ornithine carbamoyltr 95.8 0.12 2.6E-06 55.7 12.8 128 172-319 118-274 (332)
299 TIGR02356 adenyl_thiF thiazole 95.8 0.021 4.6E-07 57.0 6.6 37 225-261 17-54 (202)
300 PRK04435 hypothetical protein; 95.8 0.024 5.2E-07 53.9 6.6 69 558-627 69-141 (147)
301 KOG2304 3-hydroxyacyl-CoA dehy 95.7 0.0099 2.1E-07 59.9 3.8 220 228-474 10-268 (298)
302 PRK00856 pyrB aspartate carbam 95.7 0.17 3.6E-06 54.0 13.3 64 227-291 154-221 (305)
303 PTZ00082 L-lactate dehydrogena 95.7 0.03 6.5E-07 60.0 7.7 115 227-342 4-153 (321)
304 PRK06407 ornithine cyclodeamin 95.7 0.051 1.1E-06 57.7 9.4 85 229-319 117-212 (301)
305 PRK03369 murD UDP-N-acetylmura 95.6 0.026 5.5E-07 63.9 7.5 109 227-335 10-141 (488)
306 PRK07589 ornithine cyclodeamin 95.6 0.043 9.4E-07 59.4 8.8 87 229-319 129-225 (346)
307 PRK11891 aspartate carbamoyltr 95.6 0.2 4.3E-06 55.7 14.0 102 170-291 198-316 (429)
308 PRK02102 ornithine carbamoyltr 95.6 0.15 3.3E-06 54.9 12.8 64 227-290 153-231 (331)
309 TIGR03316 ygeW probable carbam 95.6 0.25 5.4E-06 53.8 14.4 65 226-290 167-252 (357)
310 COG2423 Predicted ornithine cy 95.5 0.047 1E-06 58.7 8.6 86 229-320 130-226 (330)
311 TIGR01850 argC N-acetyl-gamma- 95.5 0.036 7.8E-07 60.0 7.8 86 230-321 1-101 (346)
312 PRK00048 dihydrodipicolinate r 95.5 0.054 1.2E-06 56.1 8.7 63 230-292 2-69 (257)
313 PLN02342 ornithine carbamoyltr 95.4 0.23 5.1E-06 53.8 13.5 128 171-319 157-307 (348)
314 TIGR00655 PurU formyltetrahydr 95.4 0.022 4.8E-07 59.8 5.6 50 560-609 2-51 (280)
315 PF01118 Semialdhyde_dh: Semia 95.4 0.017 3.6E-07 52.7 4.0 85 231-320 1-98 (121)
316 PRK08306 dipicolinate synthase 95.4 0.071 1.5E-06 56.5 9.2 87 228-316 1-98 (296)
317 COG5322 Predicted dehydrogenas 95.4 0.045 9.7E-07 56.6 7.2 113 199-327 148-269 (351)
318 PRK04207 glyceraldehyde-3-phos 95.3 0.042 9.1E-07 59.4 7.5 31 230-260 2-34 (341)
319 PRK14804 ornithine carbamoyltr 95.3 0.26 5.7E-06 52.6 13.4 66 226-291 150-226 (311)
320 PF01113 DapB_N: Dihydrodipico 95.3 0.046 9.9E-07 50.3 6.7 98 231-333 2-112 (124)
321 PRK08269 3-hydroxybutyryl-CoA 95.3 0.15 3.3E-06 54.4 11.6 99 240-340 1-135 (314)
322 cd05312 NAD_bind_1_malic_enz N 95.3 1.1 2.4E-05 47.0 17.6 168 223-394 19-223 (279)
323 cd00762 NAD_bind_malic_enz NAD 95.3 0.79 1.7E-05 47.5 16.3 159 191-371 5-196 (254)
324 PRK13010 purU formyltetrahydro 95.3 0.032 7E-07 58.9 6.2 49 559-607 10-58 (289)
325 TIGR02964 xanthine_xdhC xanthi 95.3 0.095 2.1E-06 54.1 9.5 85 230-335 101-185 (246)
326 PRK14106 murD UDP-N-acetylmura 95.3 0.044 9.5E-07 61.0 7.6 110 226-335 2-132 (450)
327 COG0569 TrkA K+ transport syst 95.3 0.027 5.9E-07 57.2 5.4 63 230-292 1-75 (225)
328 cd04900 ACT_UUR-like_1 ACT dom 95.3 0.082 1.8E-06 43.8 7.4 60 560-620 3-67 (73)
329 PRK11064 wecC UDP-N-acetyl-D-m 95.3 0.048 1E-06 60.5 7.8 70 224-293 315-396 (415)
330 COG1648 CysG Siroheme synthase 95.2 0.042 9.2E-07 55.3 6.5 90 224-319 7-103 (210)
331 PRK01390 murD UDP-N-acetylmura 95.2 0.04 8.6E-07 61.7 7.0 109 227-335 7-138 (460)
332 COG1004 Ugd Predicted UDP-gluc 95.2 0.15 3.3E-06 55.6 11.0 141 230-375 1-175 (414)
333 PRK00066 ldh L-lactate dehydro 95.2 0.041 8.9E-07 58.8 6.7 65 228-292 5-82 (315)
334 cd04873 ACT_UUR-ACR-like ACT d 95.2 0.073 1.6E-06 42.7 6.7 59 560-620 2-64 (70)
335 PRK12548 shikimate 5-dehydroge 95.1 0.067 1.5E-06 56.4 8.1 37 226-262 123-160 (289)
336 cd01339 LDH-like_MDH L-lactate 95.1 0.045 9.8E-07 57.9 6.8 109 232-342 1-140 (300)
337 PRK12562 ornithine carbamoyltr 95.1 0.37 8.1E-06 52.0 13.7 94 226-319 153-275 (334)
338 PRK06019 phosphoribosylaminoim 95.1 0.045 9.7E-07 59.7 6.9 61 229-289 2-69 (372)
339 PRK02006 murD UDP-N-acetylmura 95.1 0.048 1E-06 61.7 7.3 109 227-335 5-145 (498)
340 PLN02520 bifunctional 3-dehydr 95.1 0.089 1.9E-06 60.2 9.4 39 224-262 374-412 (529)
341 PRK09496 trkA potassium transp 95.0 0.05 1.1E-06 60.4 7.2 65 230-294 1-76 (453)
342 cd05293 LDH_1 A subgroup of L- 95.0 0.14 3E-06 54.7 10.3 111 230-341 4-144 (312)
343 cd05292 LDH_2 A subgroup of L- 95.0 0.042 9.2E-07 58.4 6.3 64 230-294 1-78 (308)
344 PF02254 TrkA_N: TrkA-N domain 95.0 0.06 1.3E-06 48.1 6.4 84 232-317 1-94 (116)
345 TIGR01809 Shik-DH-AROM shikima 95.0 0.037 8.1E-07 58.1 5.8 69 226-294 122-201 (282)
346 cd05291 HicDH_like L-2-hydroxy 95.0 0.051 1.1E-06 57.7 6.8 64 230-293 1-78 (306)
347 PRK07232 bifunctional malic en 95.0 0.97 2.1E-05 53.7 17.8 176 175-387 152-351 (752)
348 PRK02472 murD UDP-N-acetylmura 94.9 0.19 4.2E-06 55.8 11.5 110 226-335 2-132 (447)
349 PRK12749 quinate/shikimate deh 94.9 0.11 2.3E-06 55.0 8.7 70 225-294 120-207 (288)
350 PRK13376 pyrB bifunctional asp 94.9 0.6 1.3E-05 53.2 15.1 61 226-286 171-244 (525)
351 COG1004 Ugd Predicted UDP-gluc 94.8 0.08 1.7E-06 57.7 7.7 66 227-292 308-385 (414)
352 PRK12475 thiamine/molybdopteri 94.8 0.059 1.3E-06 58.2 6.8 37 225-261 20-57 (338)
353 cd04925 ACT_ACR_2 ACT domain-c 94.8 0.11 2.5E-06 43.2 7.0 58 561-620 3-66 (74)
354 cd02116 ACT ACT domains are co 94.8 0.066 1.4E-06 39.3 5.1 56 563-618 3-59 (60)
355 PRK00141 murD UDP-N-acetylmura 94.8 0.066 1.4E-06 60.3 7.3 111 225-335 11-145 (473)
356 PRK08300 acetaldehyde dehydrog 94.8 0.1 2.2E-06 55.4 8.2 86 229-319 4-101 (302)
357 COG0771 MurD UDP-N-acetylmuram 94.8 0.057 1.2E-06 60.2 6.6 122 227-349 5-156 (448)
358 PRK15182 Vi polysaccharide bio 94.7 0.13 2.9E-06 57.2 9.5 96 224-323 309-416 (425)
359 cd00300 LDH_like L-lactate deh 94.6 0.11 2.3E-06 55.2 8.0 87 232-319 1-115 (300)
360 PRK00421 murC UDP-N-acetylmura 94.6 0.073 1.6E-06 59.6 7.2 110 227-336 5-132 (461)
361 PRK06270 homoserine dehydrogen 94.6 0.17 3.6E-06 54.8 9.5 108 231-338 4-145 (341)
362 cd04899 ACT_ACR-UUR-like_2 C-t 94.6 0.11 2.4E-06 42.0 6.3 59 560-620 2-64 (70)
363 cd00757 ThiF_MoeB_HesA_family 94.6 0.042 9E-07 55.8 4.6 91 225-319 17-143 (228)
364 cd04905 ACT_CM-PDT C-terminal 94.5 0.11 2.3E-06 43.8 6.3 61 560-620 3-68 (80)
365 COG0281 SfcA Malic enzyme [Ene 94.5 0.99 2.1E-05 49.7 15.1 183 174-393 165-370 (432)
366 PRK11589 gcvR glycine cleavage 94.5 0.045 9.8E-07 54.3 4.5 48 559-606 96-145 (190)
367 PF13478 XdhC_C: XdhC Rossmann 94.5 0.046 9.9E-07 51.3 4.2 80 232-336 1-80 (136)
368 PF13380 CoA_binding_2: CoA bi 94.4 0.13 2.8E-06 46.8 7.1 99 230-339 1-104 (116)
369 TIGR03215 ac_ald_DH_ac acetald 94.4 0.18 3.8E-06 53.3 9.0 84 230-318 2-94 (285)
370 PRK06027 purU formyltetrahydro 94.4 0.05 1.1E-06 57.4 4.9 50 559-608 7-56 (286)
371 PRK07200 aspartate/ornithine c 94.4 0.73 1.6E-05 50.8 13.9 65 226-290 184-269 (395)
372 PRK11579 putative oxidoreducta 94.3 0.098 2.1E-06 56.3 7.1 63 230-293 5-74 (346)
373 PRK09880 L-idonate 5-dehydroge 94.3 0.16 3.5E-06 54.2 8.6 46 228-273 169-216 (343)
374 PRK12862 malic enzyme; Reviewe 94.3 1.5 3.2E-05 52.4 17.2 172 176-386 161-358 (763)
375 PRK05708 2-dehydropantoate 2-r 94.3 0.15 3.3E-06 54.1 8.2 110 230-342 3-126 (305)
376 KOG2653 6-phosphogluconate deh 94.3 0.66 1.4E-05 49.9 12.6 157 230-398 7-174 (487)
377 cd05297 GH4_alpha_glucosidase_ 94.2 0.13 2.7E-06 57.4 7.9 160 230-394 1-221 (423)
378 PRK00436 argC N-acetyl-gamma-g 94.2 0.11 2.4E-06 56.1 7.3 87 230-321 3-101 (343)
379 PRK13011 formyltetrahydrofolat 94.2 0.11 2.4E-06 54.8 6.9 50 559-608 8-57 (286)
380 PRK01438 murD UDP-N-acetylmura 94.2 0.11 2.3E-06 58.5 7.2 112 224-335 11-146 (480)
381 COG1707 ACT domain-containing 94.1 0.079 1.7E-06 50.8 5.0 66 562-627 6-72 (218)
382 PRK08192 aspartate carbamoyltr 94.1 0.7 1.5E-05 50.0 12.9 66 225-290 155-233 (338)
383 PF00056 Ldh_1_N: lactate/mala 94.1 0.05 1.1E-06 51.2 3.7 94 230-325 1-122 (141)
384 PRK10669 putative cation:proto 94.0 0.088 1.9E-06 60.5 6.3 86 230-317 418-513 (558)
385 cd04880 ACT_AAAH-PDT-like ACT 94.0 0.14 3.1E-06 42.4 5.8 59 561-620 2-66 (75)
386 cd08230 glucose_DH Glucose deh 94.0 0.13 2.8E-06 55.2 7.1 46 228-273 172-221 (355)
387 PRK04308 murD UDP-N-acetylmura 94.0 0.12 2.7E-06 57.5 7.1 109 227-335 3-134 (445)
388 COG0788 PurU Formyltetrahydrof 93.9 0.09 2E-06 54.2 5.4 55 557-611 6-60 (287)
389 COG0169 AroE Shikimate 5-dehyd 93.8 0.18 3.8E-06 53.2 7.6 95 225-322 122-229 (283)
390 cd04928 ACT_TyrKc Uncharacteri 93.8 0.21 4.6E-06 41.3 6.3 49 559-608 2-50 (68)
391 PRK05562 precorrin-2 dehydroge 93.8 0.16 3.4E-06 51.7 6.8 90 224-318 20-115 (223)
392 PRK07688 thiamine/molybdopteri 93.7 0.14 2.9E-06 55.5 6.7 37 225-261 20-57 (339)
393 PRK03659 glutathione-regulated 93.7 0.14 2.9E-06 59.6 7.0 90 229-320 400-499 (601)
394 PRK04523 N-acetylornithine car 93.6 1.1 2.5E-05 48.3 13.3 99 171-291 132-252 (335)
395 PRK05086 malate dehydrogenase; 93.5 0.37 8.1E-06 51.4 9.5 91 230-320 1-119 (312)
396 PRK04690 murD UDP-N-acetylmura 93.5 0.15 3.3E-06 57.4 6.8 109 227-335 6-139 (468)
397 PRK10637 cysG siroheme synthas 93.5 0.19 4.1E-06 56.5 7.6 91 224-319 7-103 (457)
398 PRK03803 murD UDP-N-acetylmura 93.5 0.17 3.6E-06 56.5 7.2 107 229-335 6-132 (448)
399 PLN02968 Probable N-acetyl-gam 93.5 0.15 3.3E-06 56.0 6.6 95 227-327 36-142 (381)
400 PLN02948 phosphoribosylaminoim 93.4 0.2 4.3E-06 58.0 7.8 68 226-293 19-93 (577)
401 PRK05690 molybdopterin biosynt 93.4 0.13 2.8E-06 53.0 5.7 37 225-261 28-65 (245)
402 COG0673 MviM Predicted dehydro 93.4 0.17 3.8E-06 53.7 6.9 64 230-293 4-77 (342)
403 COG0440 IlvH Acetolactate synt 93.4 0.17 3.6E-06 48.8 5.9 70 557-626 3-74 (163)
404 cd01486 Apg7 Apg7 is an E1-lik 93.4 0.15 3.3E-06 54.0 6.2 86 231-320 1-141 (307)
405 PLN02819 lysine-ketoglutarate 93.3 0.31 6.8E-06 59.7 9.5 66 228-293 568-658 (1042)
406 PRK03806 murD UDP-N-acetylmura 93.3 0.33 7.2E-06 53.9 9.1 108 227-335 4-129 (438)
407 PRK14027 quinate/shikimate deh 93.3 0.41 9E-06 50.4 9.3 69 226-294 124-205 (283)
408 PRK04148 hypothetical protein; 93.1 0.22 4.7E-06 46.7 6.1 64 228-292 16-86 (134)
409 PRK12861 malic enzyme; Reviewe 93.1 3.9 8.4E-05 48.8 17.6 172 176-386 157-354 (764)
410 TIGR01532 E4PD_g-proteo D-eryt 93.0 0.31 6.6E-06 52.4 7.8 31 231-261 1-35 (325)
411 TIGR00036 dapB dihydrodipicoli 92.9 0.39 8.4E-06 50.1 8.3 63 230-292 2-77 (266)
412 TIGR01087 murD UDP-N-acetylmur 92.8 0.53 1.1E-05 52.2 9.8 106 231-336 1-127 (433)
413 COG2716 GcvR Glycine cleavage 92.8 0.21 4.6E-06 48.3 5.7 33 563-595 97-129 (176)
414 PRK15057 UDP-glucose 6-dehydro 92.8 0.3 6.6E-06 53.7 7.7 63 227-291 294-367 (388)
415 PF03435 Saccharop_dh: Sacchar 92.8 0.18 3.8E-06 55.1 5.8 81 232-318 1-97 (386)
416 PRK08762 molybdopterin biosynt 92.7 0.32 6.8E-06 53.3 7.8 75 170-261 93-168 (376)
417 TIGR01381 E1_like_apg7 E1-like 92.7 0.26 5.5E-06 57.2 7.2 118 185-319 306-480 (664)
418 TIGR01161 purK phosphoribosyla 92.7 0.28 6E-06 52.9 7.2 59 231-289 1-66 (352)
419 TIGR02355 moeB molybdopterin s 92.7 0.15 3.2E-06 52.4 4.8 37 225-261 20-57 (240)
420 PF13460 NAD_binding_10: NADH( 92.7 0.18 4E-06 48.3 5.2 63 232-295 1-72 (183)
421 cd05188 MDR Medium chain reduc 92.7 0.99 2.1E-05 45.2 10.8 35 228-262 134-168 (271)
422 PRK03815 murD UDP-N-acetylmura 92.6 0.26 5.7E-06 54.4 7.0 103 230-335 1-113 (401)
423 TIGR03366 HpnZ_proposed putati 92.6 0.39 8.4E-06 49.8 7.8 45 228-272 120-166 (280)
424 TIGR02853 spore_dpaA dipicolin 92.6 0.44 9.4E-06 50.3 8.2 103 229-338 1-114 (287)
425 cd01483 E1_enzyme_family Super 92.6 1.1 2.4E-05 41.7 10.2 100 231-338 1-115 (143)
426 PRK03562 glutathione-regulated 92.5 0.22 4.8E-06 58.2 6.5 89 229-319 400-498 (621)
427 COG1893 ApbA Ketopantoate redu 92.5 1.5 3.4E-05 46.7 12.3 138 230-373 1-154 (307)
428 cd04927 ACT_ACR-like_2 Second 92.4 0.54 1.2E-05 39.5 7.0 56 563-619 5-64 (76)
429 TIGR02822 adh_fam_2 zinc-bindi 92.3 0.38 8.3E-06 51.2 7.6 87 228-319 165-254 (329)
430 PTZ00325 malate dehydrogenase; 92.3 0.29 6.3E-06 52.5 6.6 67 227-293 6-86 (321)
431 COG3830 ACT domain-containing 92.3 0.099 2.1E-06 45.4 2.4 30 562-591 7-36 (90)
432 PLN02272 glyceraldehyde-3-phos 92.2 0.39 8.5E-06 53.2 7.6 36 230-265 86-123 (421)
433 PRK01368 murD UDP-N-acetylmura 92.2 0.35 7.6E-06 54.3 7.4 107 228-335 5-128 (454)
434 PLN02602 lactate dehydrogenase 92.2 0.36 7.8E-06 52.4 7.2 89 230-319 38-154 (350)
435 PRK08644 thiamine biosynthesis 92.1 0.36 7.8E-06 48.7 6.7 37 225-261 24-61 (212)
436 cd04895 ACT_ACR_1 ACT domain-c 92.0 0.61 1.3E-05 39.0 6.8 58 561-620 4-66 (72)
437 PRK09496 trkA potassium transp 91.9 0.32 6.9E-06 54.0 6.6 67 227-293 229-307 (453)
438 PLN02586 probable cinnamyl alc 91.8 0.7 1.5E-05 49.9 9.0 45 228-272 183-229 (360)
439 PF04016 DUF364: Domain of unk 91.8 0.24 5.3E-06 47.0 4.8 85 227-320 9-96 (147)
440 PRK07877 hypothetical protein; 91.8 0.24 5.2E-06 58.6 5.6 96 226-325 104-235 (722)
441 cd04896 ACT_ACR-like_3 ACT dom 91.8 0.63 1.4E-05 39.3 6.6 60 561-620 3-66 (75)
442 KOG2663 Acetolactate synthase, 91.7 0.15 3.2E-06 52.1 3.3 71 557-627 76-148 (309)
443 PRK14805 ornithine carbamoyltr 91.7 3 6.5E-05 44.4 13.4 65 226-291 144-222 (302)
444 COG3288 PntA NAD/NADP transhyd 91.7 0.33 7.2E-06 51.2 6.0 95 224-319 159-281 (356)
445 cd04906 ACT_ThrD-I_1 First of 91.6 0.41 8.9E-06 40.9 5.5 59 561-621 4-65 (85)
446 PF05368 NmrA: NmrA-like famil 91.6 0.23 4.9E-06 49.9 4.6 63 232-294 1-75 (233)
447 PRK08223 hypothetical protein; 91.5 0.34 7.3E-06 51.2 5.8 37 225-261 23-60 (287)
448 PRK10206 putative oxidoreducta 91.4 0.41 8.9E-06 51.7 6.6 64 231-294 3-75 (344)
449 PRK10872 relA (p)ppGpp synthet 91.4 0.33 7.1E-06 57.5 6.1 68 560-627 668-738 (743)
450 cd05294 LDH-like_MDH_nadp A la 91.2 0.56 1.2E-05 50.0 7.3 63 230-293 1-82 (309)
451 CHL00194 ycf39 Ycf39; Provisio 91.2 0.49 1.1E-05 50.1 6.9 62 230-291 1-72 (317)
452 COG0078 ArgF Ornithine carbamo 91.2 3.3 7.2E-05 43.9 12.7 92 227-318 151-269 (310)
453 PRK11589 gcvR glycine cleavage 91.1 0.21 4.6E-06 49.6 3.7 42 563-604 13-54 (190)
454 PLN02178 cinnamyl-alcohol dehy 91.1 0.82 1.8E-05 49.8 8.6 35 228-262 178-212 (375)
455 cd08239 THR_DH_like L-threonin 90.9 0.71 1.5E-05 48.9 7.8 34 229-262 164-198 (339)
456 cd05283 CAD1 Cinnamyl alcohol 90.9 0.95 2E-05 48.0 8.8 45 228-272 169-214 (337)
457 PRK15076 alpha-galactosidase; 90.9 0.74 1.6E-05 51.4 8.1 112 230-342 2-169 (431)
458 cd01487 E1_ThiF_like E1_ThiF_l 90.9 0.75 1.6E-05 44.9 7.2 31 231-261 1-32 (174)
459 cd05290 LDH_3 A subgroup of L- 90.8 0.46 1E-05 50.7 6.2 63 231-293 1-78 (307)
460 TIGR03201 dearomat_had 6-hydro 90.8 0.76 1.6E-05 49.2 7.9 35 228-262 166-200 (349)
461 TIGR01761 thiaz-red thiazoliny 90.8 0.62 1.3E-05 50.5 7.2 63 230-293 4-72 (343)
462 PRK12550 shikimate 5-dehydroge 90.8 0.7 1.5E-05 48.5 7.4 64 229-294 122-189 (272)
463 PLN00106 malate dehydrogenase 90.5 0.56 1.2E-05 50.4 6.5 64 229-292 18-95 (323)
464 PRK13529 malate dehydrogenase; 90.4 9.9 0.00022 43.7 16.5 194 152-371 239-472 (563)
465 PRK02705 murD UDP-N-acetylmura 90.4 0.75 1.6E-05 51.3 7.7 105 231-335 2-133 (459)
466 PRK07231 fabG 3-ketoacyl-(acyl 90.4 0.64 1.4E-05 46.6 6.5 37 226-262 2-39 (251)
467 KOG0022 Alcohol dehydrogenase, 90.4 0.35 7.6E-06 51.3 4.6 46 228-273 192-239 (375)
468 PRK12769 putative oxidoreducta 90.3 0.79 1.7E-05 53.8 8.2 35 227-261 325-359 (654)
469 COG1063 Tdh Threonine dehydrog 90.3 1 2.2E-05 48.8 8.4 39 231-269 171-211 (350)
470 cd08281 liver_ADH_like1 Zinc-d 90.3 0.92 2E-05 49.0 8.1 45 228-272 191-237 (371)
471 PRK05600 thiamine biosynthesis 90.2 0.35 7.6E-06 52.9 4.7 37 225-261 37-74 (370)
472 cd01336 MDH_cytoplasmic_cytoso 90.2 0.51 1.1E-05 50.7 5.9 63 231-293 4-88 (325)
473 PF03447 NAD_binding_3: Homose 90.2 0.44 9.4E-06 42.9 4.6 96 236-336 1-110 (117)
474 PRK06382 threonine dehydratase 90.1 0.41 8.8E-06 53.0 5.2 68 554-621 326-399 (406)
475 PRK05597 molybdopterin biosynt 90.0 0.33 7.1E-06 52.8 4.2 37 225-261 24-61 (355)
476 PF05222 AlaDh_PNT_N: Alanine 89.9 1.8 3.9E-05 40.6 8.7 96 243-348 18-119 (136)
477 PF02629 CoA_binding: CoA bind 89.9 0.23 5.1E-06 43.4 2.6 61 230-292 4-71 (96)
478 cd01338 MDH_choloroplast_like 89.9 0.42 9.1E-06 51.3 5.0 64 230-293 3-88 (322)
479 TIGR01202 bchC 2-desacetyl-2-h 89.8 1 2.2E-05 47.5 7.8 34 228-261 144-178 (308)
480 PRK06182 short chain dehydroge 89.8 0.95 2.1E-05 46.4 7.3 35 228-262 2-37 (273)
481 TIGR01082 murC UDP-N-acetylmur 89.7 0.72 1.6E-05 51.5 6.8 104 232-335 2-123 (448)
482 cd04885 ACT_ThrD-I Tandem C-te 89.7 0.69 1.5E-05 37.7 5.0 57 563-620 3-61 (68)
483 cd08237 ribitol-5-phosphate_DH 89.7 1.3 2.9E-05 47.3 8.7 35 228-262 163-199 (341)
484 PRK07411 hypothetical protein; 89.7 0.41 9E-06 52.7 4.8 37 225-261 34-71 (390)
485 PRK12809 putative oxidoreducta 89.4 0.9 1.9E-05 53.3 7.6 36 227-262 308-343 (639)
486 TIGR01759 MalateDH-SF1 malate 89.2 1 2.2E-05 48.4 7.2 64 230-293 4-89 (323)
487 PRK12814 putative NADPH-depend 89.1 3.5 7.5E-05 48.5 12.1 68 227-294 191-289 (652)
488 PF00899 ThiF: ThiF family; I 89.0 0.39 8.5E-06 44.4 3.5 34 228-261 1-35 (135)
489 PLN02819 lysine-ketoglutarate 88.8 1.1 2.3E-05 55.2 7.8 89 229-319 203-338 (1042)
490 PRK11863 N-acetyl-gamma-glutam 88.8 1.1 2.3E-05 48.1 7.0 76 230-319 3-81 (313)
491 PRK06392 homoserine dehydrogen 88.8 1.5 3.2E-05 47.3 8.1 105 231-336 2-134 (326)
492 TIGR03451 mycoS_dep_FDH mycoth 88.8 1.5 3.2E-05 47.1 8.3 45 228-272 176-222 (358)
493 cd08296 CAD_like Cinnamyl alco 88.7 1.9 4.1E-05 45.7 8.9 35 228-262 163-197 (333)
494 PRK14573 bifunctional D-alanyl 88.6 2.5 5.4E-05 51.0 10.8 107 230-336 5-129 (809)
495 PLN02740 Alcohol dehydrogenase 88.5 1.7 3.6E-05 47.3 8.5 45 228-272 198-244 (381)
496 TIGR01851 argC_other N-acetyl- 88.5 1.5 3.3E-05 46.8 7.8 75 231-319 3-80 (310)
497 PRK04663 murD UDP-N-acetylmura 88.4 3.1 6.7E-05 46.3 10.7 109 227-335 4-132 (438)
498 TIGR01318 gltD_gamma_fam gluta 88.3 1.3 2.8E-05 49.9 7.7 35 227-261 139-173 (467)
499 PRK06128 oxidoreductase; Provi 88.3 2.1 4.7E-05 44.7 8.9 35 226-260 52-87 (300)
500 PRK11092 bifunctional (p)ppGpp 88.2 0.77 1.7E-05 54.3 5.9 67 560-627 628-697 (702)
No 1
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=8.2e-113 Score=956.43 Aligned_cols=517 Identities=44% Similarity=0.712 Sum_probs=487.9
Q ss_pred eEEEeCCCCHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHh
Q 006864 92 TILVSEKLGEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (628)
Q Consensus 92 ~vlv~~~l~~~~~~~l~~~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~ 170 (628)
|||+++++.++.++.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+||||||++
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 79 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIE 79 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHH
Confidence 4889999999999888765 3666544567889999999999999998889999999988 5999999999999999999
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHc
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~ 250 (628)
+|+++||.|+|+|++|+.+||||+++|||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|+||+.+|++|++
T Consensus 80 ~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~ 159 (525)
T TIGR01327 80 AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159 (525)
T ss_pred HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986677899999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHH
Q 006864 251 LGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329 (628)
Q Consensus 251 ~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL 329 (628)
|||+|++|||+.+.+.+...++..+ ++++++++||+|++|+|++++|+++||++.|++||+|++|||||||++||++||
T Consensus 160 fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 9999999999866666667787766 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcc
Q 006864 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSE 409 (628)
Q Consensus 330 ~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~ 409 (628)
++||++|+|+||+||||+.||+ .++|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.+.||.|.++++
T Consensus 240 ~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 240 YEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred HHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 9999999999999999999996 589999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcC
Q 006864 410 VLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKG 489 (628)
Q Consensus 410 ~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~G 489 (628)
.+++++||++||+|||++++||+++ .+++++|+|+|||+ . +++|++++|+++|+|+...++++|++||+.+|||+|
T Consensus 319 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~GsfA-~-~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~G 394 (525)
T TIGR01327 319 VMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA-T-ENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERG 394 (525)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcCC--CceEEEEEEEcchh-c-ccccHHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999988 89999999999998 4 599999999999999887776899999999999999
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCC
Q 006864 490 LRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQ 568 (628)
Q Consensus 490 I~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~ 568 (628)
|+|.|.+.+.. ..|||+++++++ +++++++|.|+|+| |.++|++||||+|++.|++|+|++.|.|+
T Consensus 395 I~v~~~~~~~~---~~hpNtv~i~l~----------~~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~ 461 (525)
T TIGR01327 395 ITVEESKSESS---PDYKNYLSVTVT----------GDSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461 (525)
T ss_pred CEEEEEEccCC---CCCCCEEEEEEE----------eCCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCc
Confidence 99999877643 489999999997 45678999999997 79999999999999999999999999999
Q ss_pred CCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 569 PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
||+|++|+++|++++|||++|+++|..+|++|+|+|++|++++++++++|+++++|.++
T Consensus 462 pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v 520 (525)
T TIGR01327 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSV 520 (525)
T ss_pred CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999998875
No 2
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-111 Score=947.30 Aligned_cols=517 Identities=49% Similarity=0.746 Sum_probs=487.2
Q ss_pred eEEEeCCCCHhHHHHhhcCC--cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccH
Q 006864 92 TILVSEKLGEAGLAILRSFG--NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL 169 (628)
Q Consensus 92 ~vlv~~~l~~~~~~~l~~~~--~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl 169 (628)
||++++++.+..++.|++.. ++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+||||||+
T Consensus 2 ~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 80 (526)
T PRK13581 2 KVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVDV 80 (526)
T ss_pred eEEEeCCCCHHHHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccccH
Confidence 68999999998888888752 444434557889999999999999988789999999988 599999999999999999
Q ss_pred hHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHH
Q 006864 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAK 249 (628)
Q Consensus 170 ~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~ 249 (628)
++|+++||.|+|+|++|+.+||||+++|||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|+||+.+|++|+
T Consensus 81 ~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~ 160 (526)
T PRK13581 81 PAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAK 160 (526)
T ss_pred HHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987666789999999999999999999999999
Q ss_pred cCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHH
Q 006864 250 GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329 (628)
Q Consensus 250 ~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL 329 (628)
+|||+|++|||+.+.+.+...+++.+++++++++||+|++|+|++++|++++|++.|++||+|++|||++||++||++||
T Consensus 161 ~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 240 (526)
T PRK13581 161 AFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAAL 240 (526)
T ss_pred hCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHH
Confidence 99999999999876666667788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcc
Q 006864 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSE 409 (628)
Q Consensus 330 ~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~ 409 (628)
++||++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.++||.|.++++
T Consensus 241 ~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 319 (526)
T PRK13581 241 AEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITAE 319 (526)
T ss_pred HHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCchh
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcC
Q 006864 410 VLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKG 489 (628)
Q Consensus 410 ~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~G 489 (628)
.+++++||++||+|||++++||+++ .+++++|+|+|||+ .+|.+ ++++|+++|+|+...++++|++||.++|||+|
T Consensus 320 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~Gsfa-~t~~~-~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~G 395 (526)
T PRK13581 320 EAEKLKPYLDLAEKLGSLAAQLADG--PIKSVEITYRGELA-EEDTE-PLTAAALKGLLSPVLGERVNYVNAPLLAKERG 395 (526)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHcCC--CceEEEEEEecccc-ccccc-HHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999988 89999999999999 77775 99999999999777666699999999999999
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCC
Q 006864 490 LRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQ 568 (628)
Q Consensus 490 I~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~ 568 (628)
|+++|.+.+.. ..|||+++|+++ +++++++|.|+|+| |.+||++||||+|++.|++|+|++.|+|+
T Consensus 396 I~~~~~~~~~~---~~hpNtv~i~l~----------~~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D~ 462 (526)
T PRK13581 396 IEVEESKSEES---PDYSNLITVTVT----------TDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRDR 462 (526)
T ss_pred CEEEEEEecCC---CCCCCEEEEEEE----------eCCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCCc
Confidence 99999987644 489999999998 35578999999997 78999999999999999999999999999
Q ss_pred CCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 569 PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
||+|++|+++|++++|||++|+++|..+|+.|+|+|++|++++++++++|+++++|.++
T Consensus 463 pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~ 521 (526)
T PRK13581 463 PGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSA 521 (526)
T ss_pred CChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999875
No 3
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-90 Score=705.05 Aligned_cols=398 Identities=61% Similarity=0.871 Sum_probs=383.2
Q ss_pred CCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006864 90 KPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iD 168 (628)
+.+||+++++.+.+++.|++.+ ++++.+.++.||+...++++|++++|+.|++|+++|+++..+||+|+|+|+|+||||
T Consensus 6 ~~~il~~e~~~~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 6 MRKILVAESLDQACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred cceEEEecccchHHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 4489999999999999999987 899999999999999999999999999999999999966679999999999999999
Q ss_pred HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHH
Q 006864 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (628)
Q Consensus 169 l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l 248 (628)
+++|+++||.|+|+|.+|+.++|||+++|+++|+|++++++.+||+|+|++..+.|.+|+|||+||+|+|+||+++|+++
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~ 165 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRA 165 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006864 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (628)
Q Consensus 249 ~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~a 328 (628)
+++||+|++|||..+.++++..|++.++++|++..||||++|||++|+|++|+|++.|++||+|.++||++||++||+.|
T Consensus 166 k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~A 245 (406)
T KOG0068|consen 166 KAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPA 245 (406)
T ss_pred HhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeeEEEeeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCC
Q 006864 329 LVRALDSGVVAQAALDVFTEEPPAK--DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMV 406 (628)
Q Consensus 329 L~~aL~~g~i~ga~lDV~~~EP~~~--~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~ 406 (628)
|++||++|+++||++|||+.||+.. ++.|.++|||++|||+|++|.|||.+++.++++++.+|++| .....||+|.+
T Consensus 246 Lv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v 324 (406)
T KOG0068|consen 246 LVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEV 324 (406)
T ss_pred HHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccceechhhh
Confidence 9999999999999999999999754 78999999999999999999999999999999999999999 67899999999
Q ss_pred CcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHh
Q 006864 407 PSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAK 486 (628)
Q Consensus 407 ~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAk 486 (628)
..+.+++++||+.||+++||++.|++.+.+++..+..+|.+.. +.+++.+.+.+.+|+.+++.+-.+|++|+..++|
T Consensus 325 ~~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s~~---~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k 401 (406)
T KOG0068|consen 325 ALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFS---DGDIALLRADISKGIIEPIKDIYVNLVNADAKAK 401 (406)
T ss_pred hhhhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhhcc---ccceeeeHHHHhccCcchHHHHHHHHhccchhhh
Confidence 9999999999999999999999999998777888888777643 5889999999999999999999999999999999
Q ss_pred hcCce
Q 006864 487 QKGLR 491 (628)
Q Consensus 487 e~GI~ 491 (628)
+||++
T Consensus 402 ~r~l~ 406 (406)
T KOG0068|consen 402 QRGLY 406 (406)
T ss_pred hhccC
Confidence 99974
No 4
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-76 Score=645.48 Aligned_cols=393 Identities=32% Similarity=0.475 Sum_probs=351.4
Q ss_pred ccCCCCeEEEeCCCCHhHHHHhhcC-C-cEEEec-CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccc
Q 006864 86 AVTPKPTILVSEKLGEAGLAILRSF-G-NVECLY-DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162 (628)
Q Consensus 86 ~~~~~~~vlv~~~l~~~~~~~l~~~-~-~v~~~~-~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~ 162 (628)
.++.|++|++++.+.++..+.|++. . ++.... ..+++++.+.++++|++++++.+++++++++++ |+||||+++|+
T Consensus 6 ~~~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~ 84 (409)
T PRK11790 6 LPKDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCI 84 (409)
T ss_pred CCCCCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECce
Confidence 3456789999999998988888765 3 554432 356788999999999999888788999999988 59999999999
Q ss_pred ccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHH
Q 006864 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGS 242 (628)
Q Consensus 163 G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~ 242 (628)
|+||||+++|+++||.|+|+||+|+.+||||++++||+++|++.++++.+++|+|.+..+.|.+|.|||+||||+|+||+
T Consensus 85 G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~ 164 (409)
T PRK11790 85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGT 164 (409)
T ss_pred ecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999765668999999999999999999
Q ss_pred HHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 243 EVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
.+|+++++|||+|++|||+... ...++..+ +|++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||
T Consensus 165 ~vA~~~~~fGm~V~~~d~~~~~---~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG 241 (409)
T PRK11790 165 QLSVLAESLGMRVYFYDIEDKL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRG 241 (409)
T ss_pred HHHHHHHHCCCEEEEECCCccc---ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCC
Confidence 9999999999999999986421 11234433 8999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhCCCeeEEEeeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006864 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (628)
Q Consensus 322 ~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (628)
++||++||+++|++|+|+||+||||+.||++. ++|||.+|||++|||+|++|.|++++++..+++|+.+|++|+.+
T Consensus 242 ~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~ 321 (409)
T PRK11790 242 TVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGST 321 (409)
T ss_pred cccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999876 36999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCcccccccccHHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCccc
Q 006864 398 ATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFIN 477 (628)
Q Consensus 398 ~~~vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn 477 (628)
.+.||.| +
T Consensus 322 ~~~vn~~---------------------------------------------------------------------~--- 329 (409)
T PRK11790 322 LSAVNFP---------------------------------------------------------------------E--- 329 (409)
T ss_pred Ccceecc---------------------------------------------------------------------c---
Confidence 9999974 0
Q ss_pred ccchHhHHhhcCceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEECCeeEEEEECceeEEeecC
Q 006864 478 LVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLE 557 (628)
Q Consensus 478 lvNA~~iAke~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~~~ 557 (628)
+. .. +...
T Consensus 330 --------------~~---~~-------------------------------------------------------~~~~ 337 (409)
T PRK11790 330 --------------VS---LP-------------------------------------------------------EHPG 337 (409)
T ss_pred --------------cc---cC-------------------------------------------------------CCCC
Confidence 00 00 0001
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCccccC
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v~ 628 (628)
.|.|++.|+|+||+|++|+++|++++|||++|++.|. ++.|+|+|++|+.++++++++|+++++|.+|+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~~~~~~~~~i~~i~~v~~v~ 406 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDADYAEEALDALKAIPGTIRAR 406 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCCCcHHHHHHHHcCCCeEEEE
Confidence 4677889999999999999999999999999999754 48999999999999999999999999998864
No 5
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-73 Score=602.01 Aligned_cols=317 Identities=48% Similarity=0.695 Sum_probs=294.3
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCC--cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 89 PKPTILVSEKLGEAGLAILRSFG--NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 89 ~~~~vlv~~~l~~~~~~~l~~~~--~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
.+++++.++.+.++.++.+.... ++......+.+++.+.++++|++++ +.+++++++++++ ++||+|+++|+|+||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDN 79 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccc
Confidence 47889999999999999887642 2223345677889999999999999 8899999999998 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~ 246 (628)
||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++++|+|.|++..+.|.+|+|||+||||+|+||+.+|+
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999778899999999999999999999999
Q ss_pred HHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006864 247 RAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (628)
Q Consensus 247 ~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd 325 (628)
+|++|||+|++|||+.+.+.+...++. ..+|+++|++||||++|+|+|++|++|||++.|++||+|++|||||||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 999999999999998876655555554 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCC
Q 006864 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPM 405 (628)
Q Consensus 326 e~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~ 405 (628)
++||++||++|+|+||+||||++||++.++|||++|||++|||+|++|.|++++++.++++|+.+|++|..+.+ |.|.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~ 317 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPE 317 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888 7777
Q ss_pred CCcc
Q 006864 406 VPSE 409 (628)
Q Consensus 406 ~~~~ 409 (628)
++..
T Consensus 318 v~~~ 321 (324)
T COG0111 318 VDLE 321 (324)
T ss_pred cccc
Confidence 6654
No 6
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.6e-70 Score=580.30 Aligned_cols=312 Identities=30% Similarity=0.501 Sum_probs=288.5
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
+++||++++++++..+.|++..++.... ..+.+++.+.++++|++|+++ .++++++++++ |+||+|+++|+|+||
T Consensus 2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d~ 79 (323)
T PRK15409 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYDN 79 (323)
T ss_pred CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceeccc
Confidence 5789999999988888888766665432 235678889999999999864 58999999988 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc---ccceeeecCCeEEEEecChhHHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~GktiGIIGlG~IG~~ 243 (628)
||+++|+++||.|+|+|++|+.+||||+++|||+++|++.+.++.+++|+|... .+.|.+|+|||+||||+|+||+.
T Consensus 80 id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~ 159 (323)
T PRK15409 80 FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMA 159 (323)
T ss_pred ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 23588999999999999999999
Q ss_pred HHHHHH-cCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 244 VARRAK-GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 244 vA~~l~-~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
+|++++ +|||+|++|||+...+.....++++++|++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||+
T Consensus 160 va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 160 LAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 999998 9999999999986555455667788899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 006864 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (628)
Q Consensus 323 ~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn 402 (628)
+||++||++||++|+|+||+||||+.||++.++|||++|||++|||+|++|.|++.+++..+++||.+|++|+++.+.||
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999998
Q ss_pred C
Q 006864 403 A 403 (628)
Q Consensus 403 ~ 403 (628)
.
T Consensus 320 ~ 320 (323)
T PRK15409 320 P 320 (323)
T ss_pred c
Confidence 3
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=5.4e-69 Score=566.81 Aligned_cols=312 Identities=38% Similarity=0.600 Sum_probs=290.0
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEecCC---CHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLYDL---SPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~~~---~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
|++++.+.+++++..+.+.+.+++...... .. ++.+.++++|++++...+++++++++++ |+||+|+..|+||||
T Consensus 2 k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~ 79 (324)
T COG1052 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDN 79 (324)
T ss_pred CcEEEecCcCCHHHHHHhhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCc
Confidence 677999999999988888877665554332 22 6788899999999987789999999998 699999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc----cceeeecCCeEEEEecChhHH
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK----YVGVSLVGKTLAVMGFGKVGS 242 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~----~~g~~l~GktiGIIGlG~IG~ 242 (628)
||+++|+++||.|+|+|++++++||||+++|||++.|++.++++.+|+|+|.... ..|.+++|||+||||+|+||+
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~ 159 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQ 159 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999864 678899999999999999999
Q ss_pred HHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 243 EVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
++|+++++|||+|++||++..++..+..++.+++++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||+
T Consensus 160 avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 160 AVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 99999999999999999987655556666888899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006864 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN---VTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (628)
Q Consensus 323 ~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~n---vilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (628)
+||++||++||++|+|+|||||||+.||...++||+.++| |++|||+|+.|.|++.+|+..+++|+.+|++|+.+.+
T Consensus 240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~ 319 (324)
T COG1052 240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPN 319 (324)
T ss_pred ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999877899998877 9999999999999999999999999999999999999
Q ss_pred cccC
Q 006864 400 AINA 403 (628)
Q Consensus 400 ~vn~ 403 (628)
.||.
T Consensus 320 ~v~~ 323 (324)
T COG1052 320 EVNP 323 (324)
T ss_pred CCCC
Confidence 8874
No 8
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-67 Score=556.39 Aligned_cols=299 Identities=29% Similarity=0.482 Sum_probs=271.9
Q ss_pred eEEEeCC--CCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccH
Q 006864 92 TILVSEK--LGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL 169 (628)
Q Consensus 92 ~vlv~~~--l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl 169 (628)
||++++. +.+..++.|++.+++......+.+++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||||+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 79 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDI 79 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccH
Confidence 4777765 667778888876666544334578889999999999886 468999999998 599999999999999999
Q ss_pred hHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccccc------ceeeecCCeEEEEecChhHHH
Q 006864 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY------VGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 170 ~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~------~g~~l~GktiGIIGlG~IG~~ 243 (628)
++|+++||.|+|+||+|+.+||||+++|||+++|+++..++.+|+|+|.+... .+.+|+|||+||||+|+||++
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999985421 257999999999999999999
Q ss_pred HHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 244 vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
+|+++++|||+|++|||+... ...++..++|++++++||+|++|+|+|++|++|||++.|++||||++|||+|||++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~---~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKN---KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHhhcCCEEEEECCCccc---cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999997532 12356678999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006864 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH---ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (628)
Q Consensus 324 vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~---~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (628)
||++||++||++|+|+ |+||||++||++.++|||.+ ||||+|||+|++|.|++.++...+++|+.+|++|+.
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999 99999999999999999986 899999999999999999999999999999999863
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=5.5e-67 Score=556.27 Aligned_cols=312 Identities=38% Similarity=0.633 Sum_probs=286.9
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 90 ~~~vlv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
|+||++++++.++..+.|++..++.... ..+.+++.+.++++|++|+++.+++++++++++ |+||||+++|+|+||
T Consensus 2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~ 80 (333)
T PRK13243 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDN 80 (333)
T ss_pred CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccc
Confidence 5889999998888888887765554332 246788889999999999987678999999988 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc-------cceeeecCCeEEEEecCh
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGK 239 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~GktiGIIGlG~ 239 (628)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+.. +.|.+|+||||||||+|+
T Consensus 81 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~ 160 (333)
T PRK13243 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGR 160 (333)
T ss_pred cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999999999999997521 257899999999999999
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
||+.+|++|++|||+|++||++.........++...++++++++||+|++|+|++++|+++|+++.|++||+|++|||++
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 99999999999999999999986544445567777799999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 006864 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (628)
Q Consensus 320 Rg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (628)
||+++|++||+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++.+++..+++||.+|++|+++.|
T Consensus 241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~ 319 (333)
T PRK13243 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPT 319 (333)
T ss_pred CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999987 8999999999999999999999999999999999999999999989
Q ss_pred cccC
Q 006864 400 AINA 403 (628)
Q Consensus 400 ~vn~ 403 (628)
.||.
T Consensus 320 ~v~~ 323 (333)
T PRK13243 320 LVNR 323 (333)
T ss_pred ccCH
Confidence 8874
No 10
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3e-66 Score=547.10 Aligned_cols=303 Identities=30% Similarity=0.468 Sum_probs=269.8
Q ss_pred eEEEeCCC----CHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006864 92 TILVSEKL----GEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (628)
Q Consensus 92 ~vlv~~~l----~~~~~~~l~~~-~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~ 166 (628)
||++++.. .+...+.|++. .++.+....+.+++.+.++++|+++++ .+++++++++++ |+||||+++|+|+||
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccc
Confidence 46666542 23445666643 455554555678899999999998875 468999999988 599999999999999
Q ss_pred ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc------cceeeecCCeEEEEecChh
Q 006864 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLAVMGFGKV 240 (628)
Q Consensus 167 iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~GktiGIIGlG~I 240 (628)
||+++|+++||.|+|+||+++.+||||++++||+++|++.++++.+++|+|.+.. +.+.+|+|||+||||+|+|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999998642 2357899999999999999
Q ss_pred HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 241 G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
|+.+|++|++|||+|++||++.... .+..++|++++++||+|++|+|+|++|++|||++.|++||+|++|||+||
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-----RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-----cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999874321 23456999999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCcccc--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006864 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQ--HENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398 (628)
Q Consensus 321 g~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~--~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 398 (628)
|++||++||++||++|+|+||+||||+.||++.++|||. +|||++|||+|++|.|++++++..+++||.+|++|++.
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999988999995 89999999999999999999999999999999999754
Q ss_pred Cccc
Q 006864 399 TAIN 402 (628)
Q Consensus 399 ~~vn 402 (628)
+.||
T Consensus 314 ~~v~ 317 (317)
T PRK06487 314 RVVS 317 (317)
T ss_pred cCCC
Confidence 5554
No 11
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=3.4e-65 Score=549.96 Aligned_cols=320 Identities=33% Similarity=0.424 Sum_probs=284.0
Q ss_pred cccccCCCCeEEEeCCCCHh-HHHHhhcC-CcEEEec----CCCHhHHHhhc-CCCeEEEEcCCCCCCHHHHHhcCC-cc
Q 006864 83 NVQAVTPKPTILVSEKLGEA-GLAILRSF-GNVECLY----DLSPEALCEKI-SQCDALIVRSGTKVTRSVFEAANG-KL 154 (628)
Q Consensus 83 ~~~~~~~~~~vlv~~~l~~~-~~~~l~~~-~~v~~~~----~~~~~el~~~~-~~~d~liv~~~~~v~~~~l~~~~~-~L 154 (628)
++-.+..|++|++++++.++ .++.|++. .++.... ..+.+++.+.+ .++|+++++..++++++++++++. +|
T Consensus 8 ~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~l 87 (386)
T PLN02306 8 EVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGG 87 (386)
T ss_pred EeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCc
Confidence 44556789999999999774 67888765 4664321 25788888887 579999998777899999999852 47
Q ss_pred eeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc---ccceeeecCCe
Q 006864 155 KVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKT 231 (628)
Q Consensus 155 k~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~Gkt 231 (628)
|+|++.|+|+||||+++|+++||.|+|+||+++.+||||+++|||+++|+++++++.+++|+|.+. ...|.+|.|||
T Consensus 88 k~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt 167 (386)
T PLN02306 88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT 167 (386)
T ss_pred eEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999998532 23578999999
Q ss_pred EEEEecChhHHHHHHHHH-cCCCEEEEECCCCChhHH---HHcC------------Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 232 LAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAPADKA---RAVG------------VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~a---~~~g------------~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
+||||+|+||+.+|++++ +|||+|++|||+...... ...+ ++. .+|++++++||+|++|+|+|
T Consensus 168 vGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt 247 (386)
T PLN02306 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD 247 (386)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence 999999999999999985 999999999998643211 1121 122 48999999999999999999
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ 374 (628)
++|++|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||++ +++||++|||++|||+|++|.
T Consensus 248 ~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~ 326 (386)
T PLN02306 248 KTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASK 326 (386)
T ss_pred hhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcH
Confidence 9999999999999999999999999999999999999999999999999999999974 678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 375 EAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 375 ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
++++++...+++||.+|++|+++.|.||.
T Consensus 327 e~~~~~~~~~~~ni~~~~~g~~~~~~~~~ 355 (386)
T PLN02306 327 WTREGMATLAALNVLGKLKGYPVWGDPNR 355 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 99999999999999999999999999993
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=9.9e-65 Score=534.75 Aligned_cols=273 Identities=31% Similarity=0.476 Sum_probs=252.3
Q ss_pred CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHH
Q 006864 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIAL 197 (628)
Q Consensus 118 ~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l 197 (628)
..+++++.+.++++|++++. .+++++++++++ |+||+|+++|+|+||||+++|.++||.|+|+||+++.+||||++++
T Consensus 32 ~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l 109 (314)
T PRK06932 32 HTSAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGM 109 (314)
T ss_pred CCChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHH
Confidence 45688899999999998874 568999999988 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHchhHHHHHHHcCcccccc------cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC
Q 006864 198 LASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271 (628)
Q Consensus 198 ~L~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g 271 (628)
||++.|+++..++.+++|+|.+.. +.+.+|+|||+||||+|+||+.+|+++++|||+|++||++.... ..
T Consensus 110 ~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~ 185 (314)
T PRK06932 110 IFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CR 185 (314)
T ss_pred HHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cc
Confidence 999999999999999999997531 23579999999999999999999999999999999999864211 12
Q ss_pred CcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCC
Q 006864 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351 (628)
Q Consensus 272 ~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 351 (628)
..+.+|++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||+
T Consensus 186 ~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 186 EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc----cCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006864 352 AKDSKLV----QHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (628)
Q Consensus 352 ~~~~~L~----~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (628)
+.++||| ++|||++|||+|++|.|+++++...+++||.+|++|++
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999998 48999999999999999999999999999999998763
No 13
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=7.5e-64 Score=534.55 Aligned_cols=309 Identities=26% Similarity=0.394 Sum_probs=274.2
Q ss_pred ccCCCCeEEEeCCCCHhH----HHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecc
Q 006864 86 AVTPKPTILVSEKLGEAG----LAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAG 161 (628)
Q Consensus 86 ~~~~~~~vlv~~~l~~~~----~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g 161 (628)
..+.|||||++.+..+.. .+.++... +......+.+|+.+.++++|+++++ ..++++++++++ |+||||++.|
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~ 90 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYP-FIQVDAVAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQFG 90 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCC-eeEecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEECC
Confidence 356688999998877653 34444333 3333345778899999999998876 458999999987 5999999999
Q ss_pred cccCcccHhHHHhcCceEEcCCCC---ChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC
Q 006864 162 VGIDNVDLQAATEFGCLVVNAPIA---NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG 238 (628)
Q Consensus 162 ~G~D~iDl~aa~~~GI~V~n~p~~---~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG 238 (628)
+|+||||+++|.++||.|+|+|++ |+.+||||++++||+++|++...++.+++|.|.+ ..+.+|+|||+||||+|
T Consensus 91 ~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvGIiG~G 168 (347)
T PLN02928 91 VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--PIGDTLFGKTVFILGYG 168 (347)
T ss_pred cccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--ccccCCCCCEEEEECCC
Confidence 999999999999999999999985 7899999999999999999999999999999975 35789999999999999
Q ss_pred hhHHHHHHHHHcCCCEEEEECCCCChhHHHH-------------cCCcccCHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 239 KVGSEVARRAKGLGMNVIAHDPYAPADKARA-------------VGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 239 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-------------~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
.||+.+|++|++|||+|++|||+........ .+....+|++++++||+|++|+|+|++|++|||++.
T Consensus 169 ~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~ 248 (347)
T PLN02928 169 AIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEF 248 (347)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHH
Confidence 9999999999999999999999753322111 112456899999999999999999999999999999
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~ 385 (628)
|++||+|++|||+|||++||++||++||++|+|+||+||||+.||+++++|||++|||++|||+|++|.+++++++..++
T Consensus 249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~ 328 (347)
T PLN02928 249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG 328 (347)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCC
Q 006864 386 EAVVGALRGELSAT 399 (628)
Q Consensus 386 ~~i~~~l~g~~~~~ 399 (628)
+|+.+|++|+++.+
T Consensus 329 ~nl~~~~~g~~~~~ 342 (347)
T PLN02928 329 DAALQLHAGRPLTG 342 (347)
T ss_pred HHHHHHHCCCCCCc
Confidence 99999999987654
No 14
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-63 Score=533.64 Aligned_cols=295 Identities=29% Similarity=0.400 Sum_probs=267.8
Q ss_pred hHHHHhhcCC-cEEEec--CCCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcC
Q 006864 102 AGLAILRSFG-NVECLY--DLSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFG 176 (628)
Q Consensus 102 ~~~~~l~~~~-~v~~~~--~~~~~el~~~~~~~d~liv~~--~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~G 176 (628)
...+.|++.+ ++.... ..+.+++.+.++++|++|+.. .+++++++++++ |+||||+++|+|+||||+++|+++|
T Consensus 66 ~~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~g 144 (386)
T PLN03139 66 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAG 144 (386)
T ss_pred cHHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCC
Confidence 3455666664 544433 235678899999999999864 247999999998 5999999999999999999999999
Q ss_pred ceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChhHHHHHHHHHcCCCE
Q 006864 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254 (628)
Q Consensus 177 I~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~ 254 (628)
|.|+|+||+|+.+||||++++||++.|++.+.++.+++|.|.... ..+.+|.|||+||||+|+||+.+|++|++|||+
T Consensus 145 I~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~ 224 (386)
T PLN03139 145 LTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN 224 (386)
T ss_pred eEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCE
Confidence 999999999999999999999999999999999999999998532 357899999999999999999999999999999
Q ss_pred EEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHH
Q 006864 255 VIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332 (628)
Q Consensus 255 V~~~d~~~-~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~a 332 (628)
|++||++. +.+.....|+..+ ++++++++||+|++|+|++++|+++||++.|++||+|++|||++||++||++||+++
T Consensus 225 V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A 304 (386)
T PLN03139 225 LLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADA 304 (386)
T ss_pred EEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHH
Confidence 99999975 3444455677655 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006864 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (628)
Q Consensus 333 L~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (628)
|++|+|+||++|||++||++.++|||.+||+++|||+|+.|.+++++++..+++||.+|++|++.
T Consensus 305 L~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~ 369 (386)
T PLN03139 305 CSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF 369 (386)
T ss_pred HHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999853
No 15
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-63 Score=532.04 Aligned_cols=296 Identities=29% Similarity=0.453 Sum_probs=269.6
Q ss_pred HHhhcCC-cEEEec--CCCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceE
Q 006864 105 AILRSFG-NVECLY--DLSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLV 179 (628)
Q Consensus 105 ~~l~~~~-~v~~~~--~~~~~el~~~~~~~d~liv~~--~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V 179 (628)
+.|++.+ ++.... ..+.+++.+.+.++|++|++. ..++++++++++ |+||||+++|+|+||||+++|+++||.|
T Consensus 62 ~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 62 KFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEE
Confidence 5566663 554432 235688899999999999863 457999999998 5999999999999999999999999999
Q ss_pred EcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE
Q 006864 180 VNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (628)
Q Consensus 180 ~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~ 257 (628)
+|+|++|+.+||||++++||++.|++.+.++.+++|.|.+.. ..+.+|+||||||||+|+||+.+|++|++|||+|++
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999998643 247899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 258 HDPYA-PADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 258 ~d~~~-~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
||++. +.+.....++. ..++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||+++|++||++||++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 99986 33444456765 36899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q 006864 336 GVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (628)
Q Consensus 336 g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~v 401 (628)
|+|+||+||||++||++.++|||.+|||++|||+|++|.|++++++..+++||.+|++|+++.|.-
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~ 366 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEY 366 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999998876643
No 16
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.9e-60 Score=506.05 Aligned_cols=313 Identities=26% Similarity=0.426 Sum_probs=277.0
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCCcEEE--ecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCC-cceeEEeccccc
Q 006864 88 TPKPTILVSEKLGEAGLAILRSFGNVEC--LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG-KLKVVGRAGVGI 164 (628)
Q Consensus 88 ~~~~~vlv~~~l~~~~~~~l~~~~~v~~--~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~-~Lk~I~~~g~G~ 164 (628)
|.|++++++++.....++.+.+..++++ ......+|+.+.+.++|++++++.++++++++++++. +||+|+++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~ 80 (332)
T PRK08605 1 MTKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGF 80 (332)
T ss_pred CcEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEccccc
Confidence 4567889888887777877765554443 2223345667899999999998888999999999852 399999999999
Q ss_pred CcccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-ccceeeecCCeEEEEecChhHHH
Q 006864 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSE 243 (628)
Q Consensus 165 D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~GktiGIIGlG~IG~~ 243 (628)
||||+++|+++||.|+|+|++++.+||||++++||+++|++...++.+++|.|... ...|.+|+|++|||||+|.||++
T Consensus 81 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (332)
T PRK08605 81 DTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLA 160 (332)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988532 24588999999999999999999
Q ss_pred HHHHH-HcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 244 VARRA-KGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 244 vA~~l-~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
+|++| ++|||+|++||++..... ...+... ++++++++||+|++|+|++++|+++++++.|++||+|++|||++||
T Consensus 161 vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 161 VAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred HHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCC
Confidence 99999 799999999999864322 1234444 8999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHHHhCCCeeEEEeeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 006864 322 GVIDEEALVRALDSGVVAQAALDVFTEEP--PAKDS-----------KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388 (628)
Q Consensus 322 ~~vde~aL~~aL~~g~i~ga~lDV~~~EP--~~~~~-----------~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i 388 (628)
.++|+++|+++|++|+|+||+||||+.|| ++.++ +||.+|||++|||+|++|.|++++++..+++|+
T Consensus 239 ~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~ 318 (332)
T PRK08605 239 SLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDAT 318 (332)
T ss_pred cccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 34554 499999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccc
Q 006864 389 VGALRGELSATAIN 402 (628)
Q Consensus 389 ~~~l~g~~~~~~vn 402 (628)
.+|++|+...+.||
T Consensus 319 ~~~~~g~~~~~~~~ 332 (332)
T PRK08605 319 LEVLQTGTTRLRVN 332 (332)
T ss_pred HHHHcCCCCCCCcC
Confidence 99999999998876
No 17
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-60 Score=504.91 Aligned_cols=309 Identities=24% Similarity=0.370 Sum_probs=267.6
Q ss_pred CeEEEeCCCCH---hHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcC-CcceeEEecccccC
Q 006864 91 PTILVSEKLGE---AGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN-GKLKVVGRAGVGID 165 (628)
Q Consensus 91 ~~vlv~~~l~~---~~~~~l~~~~-~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~-~~Lk~I~~~g~G~D 165 (628)
+||++.+.-+. ...+.++++. ++......-.+|+.+.+.++|+++++..++++++++++++ ++||+|++.|+|+|
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d 81 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFD 81 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccc
Confidence 67777654432 2234455543 3433222223445889999999999766789999999985 38999999999999
Q ss_pred cccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-ccceeeecCCeEEEEecChhHHHH
Q 006864 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEV 244 (628)
Q Consensus 166 ~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~GktiGIIGlG~IG~~v 244 (628)
|||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|... ...+.+|+|++|||||+|.||+.+
T Consensus 82 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~v 161 (330)
T PRK12480 82 MYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAAT 161 (330)
T ss_pred hhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976432 245789999999999999999999
Q ss_pred HHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 245 ARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 245 A~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
|++|++|||+|++||++...... .... .++++++++||+|++|+|++++|+++++++.|++||+|++|||++||++
T Consensus 162 A~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~ 238 (330)
T PRK12480 162 AKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238 (330)
T ss_pred HHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccc
Confidence 99999999999999987532211 1223 3899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHhCCCeeEEEeeccCCCCCC-------------CCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 006864 324 IDEEALVRALDSGVVAQAALDVFTEEPPA-------------KDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVG 390 (628)
Q Consensus 324 vde~aL~~aL~~g~i~ga~lDV~~~EP~~-------------~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~ 390 (628)
||++||+++|++|+|+||+||||+.||+. ..+|||++|||++|||+|++|.|+++++...+++|+.+
T Consensus 239 vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~ 318 (330)
T PRK12480 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALS 318 (330)
T ss_pred cCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999962 12379999999999999999999999999999999999
Q ss_pred HHcCCCCCCccc
Q 006864 391 ALRGELSATAIN 402 (628)
Q Consensus 391 ~l~g~~~~~~vn 402 (628)
|++|+...+.||
T Consensus 319 ~~~~~~~~~~~~ 330 (330)
T PRK12480 319 VINTGTCETRLN 330 (330)
T ss_pred HHhCCCCcccCC
Confidence 999999998887
No 18
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=8e-57 Score=482.12 Aligned_cols=275 Identities=28% Similarity=0.422 Sum_probs=244.5
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHh
Q 006864 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (628)
Q Consensus 91 ~~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~ 170 (628)
+|||+.+.++ ...+.+++.+++.+....+ ...+.++++|++++++.+++++++++ . ++||+|+++++|+||||++
T Consensus 1 mkIl~d~~~~-~~~~~~~~~~ev~~~~~~~--~~~~~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~ 75 (378)
T PRK15438 1 MKILVDENMP-YARELFSRLGEVKAVPGRP--IPVAQLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVDEA 75 (378)
T ss_pred CEEEEeCCcc-hHHHHHhhcCcEEEeCCCC--CCHHHhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccCHH
Confidence 3788888775 6677888777877654321 11234789999999998999999996 4 5999999999999999999
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHc
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~ 250 (628)
+|+++||.|+|+||+|+.+||||++++||++.|+ .|.+|.|||+||||+|+||+.+|++|++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------------~g~~L~gktvGIIG~G~IG~~vA~~l~a 137 (378)
T PRK15438 76 WLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARLEA 137 (378)
T ss_pred HHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------------CCCCcCCCEEEEECcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 2458999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcc----ccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 251 LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 251 ~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~----t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
|||+|++|||..... .....+.+|++++++||+|++|+|+|++ |++|+|++.|++||+|++|||+|||++||+
T Consensus 138 ~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe 214 (378)
T PRK15438 138 LGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDN 214 (378)
T ss_pred CCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCH
Confidence 999999999864221 1123467999999999999999999996 999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~ 393 (628)
+||+++|++|++.||+||||++||+ .+++|+.+++ |+|||+||+|.|++.++..++++|+.+|+.
T Consensus 215 ~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 215 TALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred HHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999997 5778988776 999999999999999999999999999994
No 19
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=5.7e-57 Score=471.07 Aligned_cols=282 Identities=33% Similarity=0.514 Sum_probs=255.4
Q ss_pred CHhHHHhhcCCCeEEEEcC-CCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCChhhHHHHHHHHH
Q 006864 120 SPEALCEKISQCDALIVRS-GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALL 198 (628)
Q Consensus 120 ~~~el~~~~~~~d~liv~~-~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~ 198 (628)
+..+....+.++...+... ...++.+++.+..|+||+|+.+|+|+||||+++|++|||.|+|+|+.++++|||++++++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~li 129 (336)
T KOG0069|consen 50 IKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLL 129 (336)
T ss_pred chhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHH
Confidence 3445555666665555433 235788888887679999999999999999999999999999999999999999999999
Q ss_pred HHHHHchhHHHHHHHcCccccc--ccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc
Q 006864 199 ASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV 275 (628)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~ 275 (628)
|.+.|++..+++++++|+|... ...|..+.||||||+|+|+||+.+|+||++||+.+.|+.++. ..+.+.+.+.+.+
T Consensus 130 l~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~ 209 (336)
T KOG0069|consen 130 LALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFV 209 (336)
T ss_pred HHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccccc
Confidence 9999999999999999999332 235789999999999999999999999999998888888875 4566666777788
Q ss_pred CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC
Q 006864 276 SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (628)
Q Consensus 276 sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~ 355 (628)
++++++++||+|++|||+|++|+|+||++.|.+||+|++|||+|||+++|++++++||++|+|+|||||||++|| +.++
T Consensus 210 d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~ 288 (336)
T KOG0069|consen 210 DIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDH 288 (336)
T ss_pred CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 006864 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (628)
Q Consensus 356 ~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn 402 (628)
+|+.++|+++|||+|+.|.+++++|+..++.|+.+++.|++..+.++
T Consensus 289 ~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 289 PLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred chhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence 99999999999999999999999999999999999999998766554
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=5.4e-56 Score=477.02 Aligned_cols=284 Identities=29% Similarity=0.432 Sum_probs=250.5
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHh
Q 006864 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (628)
Q Consensus 91 ~~vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~ 170 (628)
+||++.+.++ ...+.+++.+++.+... .+...+.++++|++|+++.+++++++++. ++||+|+++++|+||||++
T Consensus 1 mkI~~d~~~p-~~~~~~~~~~~v~~~~~--~~~~~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 1 MKIVADENIP-LLDAFFAGFGEIRRLPG--RAFDRAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred CEEEEecCch-hHHHHHhhCCcEEEcCC--cccCHHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHH
Confidence 5788888775 44666776677765432 12224567999999999988999999974 4899999999999999999
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHc
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~ 250 (628)
+|+++||.|+|+||+|+.+||||++++||++.|+ .|.++.|||+||||+|+||+.+|++|++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------------~g~~l~gktvGIIG~G~IG~~va~~l~a 137 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRG 137 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------------cCCCcCcCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 2568999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCc----cccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 251 LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP----TTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 251 ~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~----~t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
|||+|++|||.... ...+....++++++++||+|++|+|+|+ +|++|||++.|++||+|++|||++||++||+
T Consensus 138 ~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 138 LGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 99999999986421 1123456799999999999999999999 5999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn 402 (628)
+||+++|++|++.||+||||++||+ .+++|+.. |+++|||+||+|.|++.++..++++|+.+|+++.......+
T Consensus 215 ~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~~~ 288 (381)
T PRK00257 215 QALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSLTD 288 (381)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccchhc
Confidence 9999999999999999999999996 57889885 99999999999999999999999999999999887655544
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=6.9e-56 Score=466.77 Aligned_cols=267 Identities=22% Similarity=0.283 Sum_probs=236.2
Q ss_pred cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhH-----HHhcCceEEcCCC-CChhhHHHHHHHHHHHH
Q 006864 128 ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQA-----ATEFGCLVVNAPI-ANTVAAAEHGIALLASM 201 (628)
Q Consensus 128 ~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~a-----a~~~GI~V~n~p~-~~~~avAE~~l~l~L~~ 201 (628)
..++|+++++.. +.++++ . ++||||++.|+|+|++|..+ +..+||.|+|+++ +++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999998652 467775 4 59999999999999998332 3458999999975 68999999999999999
Q ss_pred HHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHh
Q 006864 202 ARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281 (628)
Q Consensus 202 ~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell 281 (628)
+|++++..+.+++|.|.+ ..+.+++|||+||||+|.||+.+|++|++|||+|++||++.........-....++++++
T Consensus 111 ~r~~~~~~~~~~~~~w~~--~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 111 FRRFDDYQALQNSSHWQP--LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred HcChHHHHHHHHhCCcCC--CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 999999999999999975 345689999999999999999999999999999999998653211000011245899999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||++.++|||.+|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 362 NVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 362 nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
||++|||+|++|.++ ++...+++|+.+|++|+++.|.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999885 4778889999999999999998874
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-55 Score=459.27 Aligned_cols=283 Identities=25% Similarity=0.407 Sum_probs=245.4
Q ss_pred eEEEeCCCCHhHHHHhhcC---CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006864 92 TILVSEKLGEAGLAILRSF---GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (628)
Q Consensus 92 ~vlv~~~l~~~~~~~l~~~---~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iD 168 (628)
++++..++.+...+.+.+. .++... ....++|++++++. . ..+ ++||||+++|+|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~------~-~~~-~~Lk~I~~~~aG~D~id 64 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWY---------PDYYDAEAILIKGR------Y-VPG-KKTKMIQSLSAGVDHID 64 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEec---------cccCCCCEEEecCC------c-CCC-CCeEEEEECCcccCccc
Confidence 3566678888877765542 233221 12568898876542 1 123 58999999999999999
Q ss_pred HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHH
Q 006864 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (628)
Q Consensus 169 l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l 248 (628)
+++|+++||.+.|. |+++.+||||++++||+++|++++.++.+++|+|.+. .+.+|+|||+||||+|+||+++|+++
T Consensus 65 ~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 65 VSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 99999998888775 8899999999999999999999999999999999863 46899999999999999999999999
Q ss_pred HcCCCEEEEECCCCChhHHHHcCC--cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 249 KGLGMNVIAHDPYAPADKARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 249 ~~~G~~V~~~d~~~~~~~a~~~g~--~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
++|||+|++|||+.... ++ ...++++++++||+|++|+|++++|+++|+++.|++||+|++|||++||+++|+
T Consensus 142 ~afG~~V~~~~r~~~~~-----~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 142 KAFGMNIYAYTRSYVND-----GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred HHCCCEEEEECCCCccc-----CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 99999999999875321 22 245899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccC
Q 006864 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG-ASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (628)
Q Consensus 327 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig-~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~ 403 (628)
+||+++|++|++.||+||||+.||++.++ .+||+++|||++ +.|.|+++++...+++|+.+|++|++ .|.||.
T Consensus 217 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999999999999987665 689999999975 58999999999999999999999986 677764
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=1.5e-46 Score=366.08 Aligned_cols=176 Identities=46% Similarity=0.759 Sum_probs=159.5
Q ss_pred HHHHHHHHHchhHHHHHHHcCcc-cccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH-HHHcCC
Q 006864 195 IALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGV 272 (628)
Q Consensus 195 l~l~L~~~R~i~~~~~~~~~g~W-~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g~ 272 (628)
++|||++.|+++++++.+++|.| ......+.+++|+|+||||+|+||+.+|++|++|||+|++|||+..... +...++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 3345678999999999999999999999999999999999999985544 566777
Q ss_pred cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC
Q 006864 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (628)
Q Consensus 273 ~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 352 (628)
...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|++.||+||||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCcEEEcCCCC
Q 006864 353 KDSKLVQHENVTVTPHLG 370 (628)
Q Consensus 353 ~~~~L~~~~nvilTPHig 370 (628)
.++|||++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 899999999999999986
No 24
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=100.00 E-value=2.5e-40 Score=329.72 Aligned_cols=186 Identities=17% Similarity=0.199 Sum_probs=172.9
Q ss_pred HHHHHHHHhHHHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcCceEEEEE
Q 006864 417 YVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEER 496 (628)
Q Consensus 417 ~~~lAerlG~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~GI~i~~~~ 496 (628)
+-.||+|||++++||+++ .+++++++|+|+++ .++++|++++|+++|||++..+ ++|++||+.+|||+||++.|.+
T Consensus 21 ht~laerlG~l~~ql~~~--~~~~I~i~~~Gsla-~t~~~~~~~~A~l~GlL~~~~~-~vn~vNA~~iAkerGI~v~~~~ 96 (208)
T TIGR00719 21 HTAGAAKIANVARSIFGN--EPEQIEFQFHGSFA-ETFKGHGTDRAIIGGILDFDPD-DDRIKTAFEIAEAAGIDIEFRT 96 (208)
T ss_pred HHHHHHHHHHHHHHHhcC--CCcEEEEEEEeeec-ccCCCchHHHHHHhhhcCCCCC-chHHHHHHhhhhhcCceEEEEE
Confidence 789999999999999988 89999999999998 7799999999999999988777 5999999999999999999987
Q ss_pred eecCCCCC-CCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCCCCchhh
Q 006864 497 VVADSSPE-FPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGK 574 (628)
Q Consensus 497 ~~~~~~~~-~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~PGvIa~ 574 (628)
.+. +. .|+|+++++++ +.++..+++.|+|+| |.+||++||||+||+.|++|+|++.|.|+||+|++
T Consensus 97 ~~~---~~~~~~n~v~i~v~---------~~~g~~~~v~Gts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~ 164 (208)
T TIGR00719 97 EDA---GDNVHPNSAKITFS---------DEKGEEEELIGISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGTIAG 164 (208)
T ss_pred CCC---CCCCCCCeEEEEEE---------cCCCCEEEEEEEEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCChHHH
Confidence 642 23 69999999997 234444899999997 79999999999999999999999999999999999
Q ss_pred HHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHH
Q 006864 575 VGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEI 618 (628)
Q Consensus 575 V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L 618 (628)
|+++|++++|||++|+++|..+|++|+|+|++|+++|+++|++|
T Consensus 165 vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~i 208 (208)
T TIGR00719 165 VANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208 (208)
T ss_pred HHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhhC
Confidence 99999999999999999999999999999999999999999975
No 25
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=7.7e-32 Score=278.90 Aligned_cols=293 Identities=29% Similarity=0.450 Sum_probs=252.5
Q ss_pred hhcCCcEEEecCCCHhHHHhhc-CCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCC
Q 006864 107 LRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA 185 (628)
Q Consensus 107 l~~~~~v~~~~~~~~~el~~~~-~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~ 185 (628)
|+....+-++...+..|+.+++ .++-+-+......++++-+++.+ -||+|.+.|.|+||+|+.+|.+.||.|||.|+.
T Consensus 49 lk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfk-alRv~~rig~g~dn~dikaAseL~iavC~ip~~ 127 (435)
T KOG0067|consen 49 LKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFK-ALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD 127 (435)
T ss_pred hhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhh-hhceeeeeccccchhhhhhhhhheeeeecccch
Confidence 5555556666666777776533 34433333344579999999986 799999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccccc-------ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE
Q 006864 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY-------VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258 (628)
Q Consensus 186 ~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~-------~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~ 258 (628)
.-+.+|+-++.++|.++|+-....+.+++|.|..... ....++|.++|++|+|+.|+.++.++++||..|+.|
T Consensus 128 ~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ify 207 (435)
T KOG0067|consen 128 AVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFY 207 (435)
T ss_pred hHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeee
Confidence 9999999999999999999999999999999975321 234689999999999999999999999999999999
Q ss_pred CCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC
Q 006864 259 DPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 259 d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 337 (628)
|||...-..+.+|.+.+ ++++++.++|.+++||-+++.+.++||.-.+.+|+.|++++|++||+++|+++|.++|+.|+
T Consensus 208 dp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~ 287 (435)
T KOG0067|consen 208 DPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGR 287 (435)
T ss_pred cchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCc
Confidence 99987766777888766 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeccCCCCC-CCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC---CCcccCCCCC
Q 006864 338 VAQAALDVFTEEPP-AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS---ATAINAPMVP 407 (628)
Q Consensus 338 i~ga~lDV~~~EP~-~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~---~~~vn~p~~~ 407 (628)
+.+++ |- -...||.+.||.|+|||.+++++.+..++...++..+...+.|..+ +++||..+..
T Consensus 288 i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE~~~ 354 (435)
T KOG0067|consen 288 IRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKEFSP 354 (435)
T ss_pred eeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhhhcc
Confidence 99887 21 1356888999999999999999999999999999999999988764 5667764433
No 26
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.88 E-value=5.4e-22 Score=184.10 Aligned_cols=101 Identities=43% Similarity=0.549 Sum_probs=91.4
Q ss_pred EEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHH
Q 006864 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAA 172 (628)
Q Consensus 93 vlv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~~~~~d~liv~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa 172 (628)
||++++++++.+++|++..++.+....+.+++.+.++++|++++++.+++++++++++ |+||||++.|+|+||||+++|
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 7899999999999999933888888888999999999999999998777999999998 599999999999999999999
Q ss_pred HhcCceEEcCCCCChhhHHHHH
Q 006864 173 TEFGCLVVNAPIANTVAAAEHG 194 (628)
Q Consensus 173 ~~~GI~V~n~p~~~~~avAE~~ 194 (628)
+++||.|+|+||+++.+||||+
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999
No 27
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.86 E-value=5.9e-21 Score=208.97 Aligned_cols=169 Identities=21% Similarity=0.309 Sum_probs=141.1
Q ss_pred ecccccCccc-HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec
Q 006864 159 RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237 (628)
Q Consensus 159 ~~g~G~D~iD-l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl 237 (628)
-.++|+...- ++..-..||+|+|+|++++.+++|+++++++++. +..+|.+ +..+.||++||+|+
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~--------~~~LaGKtVgVIG~ 262 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT--------DVMIAGKTVVVCGY 262 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc--------CCCcCCCEEEEECC
Confidence 4688887742 3333446899999999999999999999999888 3334443 45899999999999
Q ss_pred ChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 238 GKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 238 G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
|+||+.+|++|++|||+|+++|+.... ..+...|++.+++++++++||+|++|+ .++++|+++.|++||+|++|+
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEE
Confidence 999999999999999999999665422 234456888889999999999999985 478999999999999999999
Q ss_pred EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC
Q 006864 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 352 (628)
|++|+ |++.+.++|+.+. ++|+++.||..
T Consensus 339 NvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 339 NIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred EcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 99999 7888888988754 68999999975
No 28
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.83 E-value=2e-21 Score=209.34 Aligned_cols=322 Identities=20% Similarity=0.254 Sum_probs=216.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCc-----ccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVE-----LVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~-----~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|+|||+|.||+++|+.|+..|++|.+|++..... .....+.. ..++++++++||+|++|+|.. .+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence 579999999999999999999998888877654332 22233322 136788999999999999964 4555553
Q ss_pred HHHh-cCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC---------CCCccccCCcEEEcCCCCCCc
Q 006864 304 ETFA-KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---------KDSKLVQHENVTVTPHLGAST 373 (628)
Q Consensus 304 ~~l~-~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~---------~~~~L~~~~nvilTPHig~~T 373 (628)
+... .++++++|+|++.-+.-..+++.+.+..+ . .+....|++ ++..|+....+++||+-+..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~-~-----~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~- 151 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGDL-I-----RFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTD- 151 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC-C-----eEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCC-
Confidence 3333 47899999999998876666655543222 1 112224543 23468899999999987654
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHH---HHHHHHh---HHHHHHhcCCCCceEE
Q 006864 374 KEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYV---VLAKKLG---RLAVQLVSGGSGIKSV 441 (628)
Q Consensus 374 ~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~---~lAerlG---~la~qL~~g~~~~~~v 441 (628)
.+. .+.+.++++.-... .+ .++++.+|.+- |++ .|+..++ ..+.+|+++ +|+++
T Consensus 152 ~~~--------~~~v~~l~~~lGa~-~v---~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~--gfrd~ 217 (359)
T PRK06545 152 PDA--------VAELKDLLSGTGAK-FV---VLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAG--GFRDI 217 (359)
T ss_pred HHH--------HHHHHHHHHHcCCE-EE---ECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcc--cccCC
Confidence 222 23333333322211 11 23444555433 322 2344443 245678887 89999
Q ss_pred EEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcCceEEEEEeecCCCCCCCCceEEEEEEeccccc
Q 006864 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKF 521 (628)
Q Consensus 442 ~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~ 521 (628)
++...+++. +|.+....++..+...|+.+..+...++++..--+...|.-.|.+.. ...+.+..+
T Consensus 218 tRia~~~p~-~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~------~~r~~~~~~-------- 282 (359)
T PRK06545 218 TRIASSDPG-MWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGK------AGRDRLPGK-------- 282 (359)
T ss_pred ccccCCCHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCccc--------
Confidence 999999998 99999999999888889888877667777775433333332222211 111111111
Q ss_pred ceeeCCCcEEEEEEEEECCeeEEEEECceeEEeecCCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEE
Q 006864 522 AAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGI 601 (628)
Q Consensus 522 ~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~~~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al 601 (628)
.+ ...++++.|++..+|+||.|+.|+++|+++||||.++++.+.+++..++
T Consensus 283 -----~~------------------------~~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~ 333 (359)
T PRK06545 283 -----HG------------------------GAIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGV 333 (359)
T ss_pred -----cC------------------------CCCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCce
Confidence 11 1456789999999999999999999999999999999999998888899
Q ss_pred EEEEeCCCCCHHHHHHH
Q 006864 602 MAIGVDEEPNQDSLKEI 618 (628)
Q Consensus 602 ~~i~vD~~~~~~~l~~L 618 (628)
..|.++.+...+...++
T Consensus 334 ~~~~~~~~~~~~~~~~~ 350 (359)
T PRK06545 334 LQISFKNEEDRERAKAL 350 (359)
T ss_pred EEEEeCCHHHHHHHHHH
Confidence 99999887665444443
No 29
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.79 E-value=3.7e-19 Score=186.08 Aligned_cols=170 Identities=21% Similarity=0.350 Sum_probs=137.6
Q ss_pred hcCCCeEEEEcCC----------------CCCCHHHHHhcCCcceeEEecccccCcccHh-HHHhcCceEE------cCC
Q 006864 127 KISQCDALIVRSG----------------TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ-AATEFGCLVV------NAP 183 (628)
Q Consensus 127 ~~~~~d~liv~~~----------------~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~-aa~~~GI~V~------n~p 183 (628)
.+.++|++|+--. ..++++++++++ .++...+|+++.|++ +|+++||.|+ |++
T Consensus 51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~----~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va 126 (287)
T TIGR02853 51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK----GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVA 126 (287)
T ss_pred hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC----CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceE
Confidence 3678888876422 225688887763 477788999999999 9999999999 999
Q ss_pred CCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC
Q 006864 184 IANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263 (628)
Q Consensus 184 ~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 263 (628)
.+|+.++||+++++++.. .+.+++|++++|+|+|.||+.+|++|+++|++|.++|+...
T Consensus 127 ~~n~~~~Ae~ai~~al~~---------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEH---------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred EEccHhHHHHHHHHHHHh---------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999999999877732 24478999999999999999999999999999999998752
Q ss_pred -hhHHHHcCCccc---CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCc-hhcH
Q 006864 264 -ADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG-VIDE 326 (628)
Q Consensus 264 -~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~-~vde 326 (628)
...+...++..+ +++++++++|+|++|+|.. +++++.++.||+++++||++... -.|.
T Consensus 186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence 233344565433 5778899999999999964 77889999999999999998743 3344
No 30
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.75 E-value=1.2e-18 Score=187.27 Aligned_cols=310 Identities=17% Similarity=0.186 Sum_probs=201.0
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHc-CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH-H
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKG-LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND-E 304 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~-~ 304 (628)
.-.||+|||+ |.||+++|+.|+. +|.+|++||+... ...++++.+++||+|++|+|... +..++.+ .
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv~~-~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPIRH-TAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCHHH-HHHHHHHHh
Confidence 4579999999 9999999999995 5899999998410 12367888999999999999654 4444432 1
Q ss_pred HH-hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC--CCCccccCCcEEEcCCCCCCcHHHHHHHH
Q 006864 305 TF-AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA--KDSKLVQHENVTVTPHLGASTKEAQEGVA 381 (628)
Q Consensus 305 ~l-~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~~L~~~~nvilTPHig~~T~ea~~~~~ 381 (628)
.+ ..+|++++|+|+++-+.--.+++. +.+ .++.+..|+. ..+.+|+..++++||. ...+.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~~---~~~------~~fVG~HPMaG~E~s~lf~g~~~iltp~---~~~~~----- 135 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAML---ASQ------AEVVGLHPMTAPPKSPTLKGRVMVVCEA---RLQHW----- 135 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHHH---hcC------CCEEeeCCCCCCCCCcccCCCeEEEeCC---CchhH-----
Confidence 11 247999999999998854444432 211 1356677864 2357899999999997 22221
Q ss_pred HHHHHHHHHHHcCCCCCCcccCCCCCcccccccccHH---------HHHHHH-------hHHHH--HHhcCCCCce----
Q 006864 382 IEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV---------VLAKKL-------GRLAV--QLVSGGSGIK---- 439 (628)
Q Consensus 382 ~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~---------~lAerl-------G~la~--qL~~g~~~~~---- 439 (628)
...++++...+..+. -.++++++|++--++ .++.-+ +.++. .+.++ +|+
T Consensus 136 ~~~v~~l~~~~Ga~v-------~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~--gFr~d~t 206 (370)
T PRK08818 136 SPWVQSLCSALQAEC-------VYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSA--SFELDTA 206 (370)
T ss_pred HHHHHHHHHHcCCEE-------EEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccch--hhHHHhh
Confidence 112344444333222 257788888866444 222211 11111 23344 677
Q ss_pred EEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcCceEE---EEEeecCCCCCCC-CceEE----
Q 006864 440 SVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS---EERVVADSSPEFP-IDSIQ---- 511 (628)
Q Consensus 440 ~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~GI~i~---~~~~~~~~~~~~~-~ntv~---- 511 (628)
.+++++.+++. +|.+....|+ .+.-.|+.+.+....+.++..--++.+|.-. |..... ..+ .+.+.
T Consensus 207 ~iTRIAss~P~-mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~----~~~~r~~~~~~~~ 280 (370)
T PRK08818 207 VIARILSLNPS-IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANA----QALQEDALAAGNY 280 (370)
T ss_pred hcchhhcCCHH-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh----hhcchhhCCcccc
Confidence 66799999998 9999999999 5666776666665566665543333333222 221110 001 11221
Q ss_pred -EEEEecccccceeeCCCcEEEEEEEEECCeeEEEEECceeEEeec----CCcEEEEecc-CCCCchhhHHhhhhcCCcc
Q 006864 512 -VQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASL----EGNLILCRQV-DQPGMIGKVGNILGEHNVN 585 (628)
Q Consensus 512 -v~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~~----~~~~Llv~~~-D~PGvIa~V~~iL~~~~IN 585 (628)
.+-. ...+ +.+.|+|..+ |+||.|+.|.++|++++||
T Consensus 281 ~~~~~-------------------------------------g~~~~~~~~~~~l~~~v~~d~pG~L~~vl~~la~~~IN 323 (370)
T PRK08818 281 TYERV-------------------------------------GYLLADLTEPLTLSVYLPEDRPGSLRTLLHVFEQHGVN 323 (370)
T ss_pred ccccc-------------------------------------ccccCCCCcceEEEEECCCCCCChHHHHHHHHHHcCcc
Confidence 1110 1334 6788888885 9999999999999999999
Q ss_pred ccceEEeeeecCccEEEEEEeCCCCCHHHHHH
Q 006864 586 VNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617 (628)
Q Consensus 586 Ia~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~ 617 (628)
|.+++..+.+.+... ..|++..+.+...+.+
T Consensus 324 it~Ies~~~r~~~y~-f~i~~~~~~~~~~~~~ 354 (370)
T PRK08818 324 LSSIHSSRTPAGELH-FRIGFEPGSDRAALAR 354 (370)
T ss_pred cceEEEecccCceEE-EEEEEeccccHHHHHH
Confidence 999999888887777 7888887666665544
No 31
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.61 E-value=1.3e-14 Score=152.54 Aligned_cols=166 Identities=22% Similarity=0.337 Sum_probs=132.6
Q ss_pred hhcCCCeEEEEcCC----------------CCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCC----
Q 006864 126 EKISQCDALIVRSG----------------TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA---- 185 (628)
Q Consensus 126 ~~~~~~d~liv~~~----------------~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~---- 185 (628)
+.+.++|+++.-.. ..++++.++.++ ++..+. .|.+.+++| +.|.++||.|++.+..
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP-EHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC-CCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 45789999985411 123678898885 675433 599999998 8999999999998864
Q ss_pred --ChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-
Q 006864 186 --NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA- 262 (628)
Q Consensus 186 --~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~- 262 (628)
|+.++||.++.+++. ..+..+.|++++|||+|.+|+.++++|+++|++|.++|++.
T Consensus 128 ~~ns~~~aegav~~a~~---------------------~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIE---------------------HTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred hhccHhHHHHHHHHHHH---------------------hCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 889999997765431 11346789999999999999999999999999999999985
Q ss_pred ChhHHHHcCCccc---CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 263 PADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 263 ~~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
....+.+.|++.+ ++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 3344556777654 467888999999999983 5688999999999999999975
No 32
>PLN02494 adenosylhomocysteinase
Probab=99.58 E-value=4.9e-15 Score=162.27 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=107.3
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
+..+.||+++|+|+|.||+.+|+++++|||+|+++|+... ...+...|+..++++++++.+|+|+. +..++++++
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~ 324 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIM 324 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchH
Confidence 3458999999999999999999999999999999987753 34566678877789999999999987 345789999
Q ss_pred HHHHhcCCCCcEEEEcCC-CchhcHHHHHHH--HhCCCeeEEEeeccCCC
Q 006864 303 DETFAKMKKGVRIVNVAR-GGVIDEEALVRA--LDSGVVAQAALDVFTEE 349 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aR-g~~vde~aL~~a--L~~g~i~ga~lDV~~~E 349 (628)
.+.|+.||+|++|+|++| +..||+++|.++ ++.+.+. +.+|+|..|
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 679999999998 8888886 999999986
No 33
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.49 E-value=8.8e-14 Score=151.25 Aligned_cols=121 Identities=26% Similarity=0.389 Sum_probs=105.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
+..+.|++++|+|+|.||+.+|++++++|++|+++|... ....+...|+...+++++++.+|+|+.++. +.++++
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG----~~~vI~ 265 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG----NKDVIR 265 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC----CHHHHH
Confidence 445899999999999999999999999999999997654 223455668877789999999999987653 688999
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHHHHhCCCeeEEEeeccCC
Q 006864 303 DETFAKMKKGVRIVNVARGGV-IDEEALVRALDSGVVAQAALDVFTE 348 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i~ga~lDV~~~ 348 (628)
.+.|..||+|++++|++|+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus 266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 999999999999999999998 9999999999887777899999884
No 34
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.47 E-value=8.9e-14 Score=145.84 Aligned_cols=93 Identities=25% Similarity=0.422 Sum_probs=82.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
..|+||||||||+|.||+++|++|+++||+|++||+.. +.+.+...|++..++++++++||+|++|+|. +++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 57999999999999999999999999999999996543 3345566688777999999999999999996 678999999
Q ss_pred HHHhcCCCCcEEEEc
Q 006864 304 ETFAKMKKGVRIVNV 318 (628)
Q Consensus 304 ~~l~~mk~gailIN~ 318 (628)
+.+..||+|++|+-.
T Consensus 91 eil~~MK~GaiL~f~ 105 (335)
T PRK13403 91 EVEENLREGQMLLFS 105 (335)
T ss_pred HHHhcCCCCCEEEEC
Confidence 999999999988764
No 35
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Probab=99.44 E-value=4.5e-16 Score=157.34 Aligned_cols=190 Identities=18% Similarity=0.136 Sum_probs=171.7
Q ss_pred HHHHHHhHHHHHHhcCCCC---ceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHhhcCceEEEE
Q 006864 419 VLAKKLGRLAVQLVSGGSG---IKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEE 495 (628)
Q Consensus 419 ~lAerlG~la~qL~~g~~~---~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAke~GI~i~~~ 495 (628)
.-+.|+|+.+++|.+. . ++.+.+.++++++ .++.+|+++.|.+.|.+ ++.+++.++.+.+.++.++||.+.+.
T Consensus 55 aGa~rigr~A~~l~~~--~~~~~~~v~~~a~a~~e-ena~Gg~~~~Apt~Ga~-G~~P~vl~~~~~~~~a~~~~i~~fl~ 130 (262)
T COG1760 55 AGALRIGRRARALFGE--LKNVPDWVNIYAYASFE-ENAAGGGTVTAPTAGAL-GIIPAVLRIKESFEIAAEKGIKIFLL 130 (262)
T ss_pred cccceechhHHHHHHH--HhhhhHHHHHHHHHhhH-hhccCCcEeeeccCccc-cCCcchHHHHHHhhhhhhhhhHhhhh
Confidence 3456789999999876 6 8899999999998 99999999999999999 77788899999999999999999887
Q ss_pred EeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCCCCchhh
Q 006864 496 RVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGK 574 (628)
Q Consensus 496 ~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~PGvIa~ 574 (628)
.....+ ..|||++.|.. .+++...+.|.+.| |.+.+++++|+.+++.+..+.+++.|. +|++..
T Consensus 131 ~a~aig--~~~~nnAsIsg-----------ae~gcq~evGsa~~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lGltcd 195 (262)
T COG1760 131 TAGAIG--ALHPNNASISG-----------AEGGCQGEVGSAIGMGAAALTELNGGSPEQSGNAPEIAMEHN--LGLTCD 195 (262)
T ss_pred hccccc--ccccCcceEEe-----------ccCceEEEeehhhhhHHHHHHHHhCCChHHhccccHHHHhcC--CCceeh
Confidence 655432 47999999876 46889999999998 789999999999999999999999998 999999
Q ss_pred -HHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 575 -VGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 575 -V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
|+.++....||++.|...|...+.++.|+++.|..+.+++++.+++++...++
T Consensus 196 pVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~ 249 (262)
T COG1760 196 PVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNV 249 (262)
T ss_pred hhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcch
Confidence 99999999999999999999999999999999999999999999998876543
No 36
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.40 E-value=6.5e-13 Score=138.49 Aligned_cols=230 Identities=15% Similarity=0.145 Sum_probs=145.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCc--ccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~--~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
++|||||+|.||+++|+.|+..|++|.+||+.. ..+.+.+.|.. ..+..+.+++||+|++|+|... ...++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 379999999999999999999999999999875 23344455532 2222357899999999999443 23332 4556
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC---------CCCccccCCcEEEcCCCCCCcHHHH
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---------KDSKLVQHENVTVTPHLGASTKEAQ 377 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~---------~~~~L~~~~nvilTPHig~~T~ea~ 377 (628)
..++++++++|++.-+.-..+++.+... ++ ....|+. ....||...++++||+-+.. .++.
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~~~~--~~-------v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~-~~~~ 148 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEKLHP--RF-------VGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD-LNAL 148 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHHhhC--Cc-------eeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC-HHHH
Confidence 6789999999999866544333332211 22 2223432 12247888999999987654 2222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHHhH-----------HHHHHhcCCCCceE
Q 006864 378 EGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGR-----------LAVQLVSGGSGIKS 440 (628)
Q Consensus 378 ~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerlG~-----------la~qL~~g~~~~~~ 440 (628)
..++.+.+.+..... .++++.++++- |++-...-+.. ++..++++ +|++
T Consensus 149 -----~~v~~l~~~lG~~~v-------~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--gfrd 214 (279)
T PRK07417 149 -----AIVEELAVSLGSKIY-------TADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASS--GFAD 214 (279)
T ss_pred -----HHHHHHHHHcCCEEE-------EcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccC--cccc
Confidence 223344333322211 23444444432 33222121111 12356666 8999
Q ss_pred EEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHHh
Q 006864 441 VKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAK 486 (628)
Q Consensus 441 v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iAk 486 (628)
++++..+++. +|.+....|+..+...|+.+..+...+.++..--+
T Consensus 215 ~tRia~~~p~-~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d 259 (279)
T PRK07417 215 TSRVGGGNPE-LGVMMAEYNRAALLRSLASYRQSLDQLEELIEQEN 259 (279)
T ss_pred cccccCCChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998 99999999998776678777776666666664333
No 37
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.38 E-value=6.3e-12 Score=137.58 Aligned_cols=211 Identities=20% Similarity=0.250 Sum_probs=140.0
Q ss_pred HhHHHHhhcCC-cEEEecCCCHhHHHh----hc--CCCeEEEEcCCCCCCHHHHHhc---CCcceeE-EecccccCcc-c
Q 006864 101 EAGLAILRSFG-NVECLYDLSPEALCE----KI--SQCDALIVRSGTKVTRSVFEAA---NGKLKVV-GRAGVGIDNV-D 168 (628)
Q Consensus 101 ~~~~~~l~~~~-~v~~~~~~~~~el~~----~~--~~~d~liv~~~~~v~~~~l~~~---~~~Lk~I-~~~g~G~D~i-D 168 (628)
++..+.|.+.+ .|......+.+|... .+ .+.|++ +..+..+..-+-... .++++-+ =-.++|+... .
T Consensus 87 d~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~~p~ii-iDdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~ 165 (425)
T PRK05476 87 DDVAAALAAAGIPVFAWKGETLEEYWECIERALDGHGPNMI-LDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYA 165 (425)
T ss_pred HHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhcCCCCCEE-EecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHH
Confidence 45555565543 443334455555422 22 234544 444444443332221 1233333 2468888874 3
Q ss_pred HhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCccccc-ccceeeecCCeEEEEecChhHHHHHHH
Q 006864 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVARR 247 (628)
Q Consensus 169 l~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~GktiGIIGlG~IG~~vA~~ 247 (628)
+....+.+++|.|++..++...-|...+. ..+.|+.- ...+..+.|++++|+|+|.||+.+|++
T Consensus 166 ~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt---------------~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~ 230 (425)
T PRK05476 166 MAKDGALKFPAINVNDSVTKSKFDNRYGT---------------GESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQR 230 (425)
T ss_pred HHHcCCCCCCEEecCCcccCccccccHHH---------------HhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence 33445678999999999887754433221 22233210 012446899999999999999999999
Q ss_pred HHcCCCEEEEECCCCCh-hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCch-hc
Q 006864 248 AKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV-ID 325 (628)
Q Consensus 248 l~~~G~~V~~~d~~~~~-~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~-vd 325 (628)
|+++|++|+++|+.... ..+...|+...+++++++.+|+|+.++ .+.++|+.+.|..||+|++++|+++... +|
T Consensus 231 lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~GailiNvG~~d~Eid 306 (425)
T PRK05476 231 LRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAILANIGHFDNEID 306 (425)
T ss_pred HHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence 99999999999876522 334455777778999999999998865 3578899999999999999999999876 67
Q ss_pred HHHHHH
Q 006864 326 EEALVR 331 (628)
Q Consensus 326 e~aL~~ 331 (628)
.++|.+
T Consensus 307 ~~~L~~ 312 (425)
T PRK05476 307 VAALEE 312 (425)
T ss_pred hHHHhh
Confidence 777654
No 38
>PLN02256 arogenate dehydrogenase
Probab=99.37 E-value=2.3e-13 Score=143.57 Aligned_cols=233 Identities=14% Similarity=0.153 Sum_probs=150.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHh-ccCCEEEEcCCCCccccccccH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQAL-ATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell-~~aDvV~l~~Plt~~t~~li~~ 303 (628)
+-++++|||||+|.||+.+|+.|+..|++|++||+......+...|+... ++++++ .++|+|++|+|.. .+..++.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~ 111 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRS 111 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHh
Confidence 34678999999999999999999999999999998864444556676543 678876 4799999999954 56666654
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCC---CCccccCCcEEEcCCC---CCCcHHHH
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK---DSKLVQHENVTVTPHL---GASTKEAQ 377 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~---~~~L~~~~nvilTPHi---g~~T~ea~ 377 (628)
-....++++++|+|++.++-+..+++.+.+..+. .+....|+.. ....+...+++++|+. .....++.
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 185 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARC 185 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHH
Confidence 3356689999999999988777888887775542 1233344321 1234555666666653 22333332
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHHhHHH---HHHhcCCCCceEEEEEEe--
Q 006864 378 EGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGRLA---VQLVSGGSGIKSVKLIYR-- 446 (628)
Q Consensus 378 ~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerlG~la---~qL~~g~~~~~~v~i~~~-- 446 (628)
+ .+.++.+.+..+.. .++++++|++- |++ +|.-|..+. ..+++| +|++.+....
T Consensus 186 ~-----~l~~l~~~lGa~v~-------~~~~eeHD~~vA~iShLpH~-la~~L~~~~~~~~~~~~~--gfrd~tria~r~ 250 (304)
T PLN02256 186 E-----RFLDIFEEEGCRMV-------EMSCEEHDRYAAGSQFITHT-VGRILGKMELESTPINTK--GYETLLRLVENT 250 (304)
T ss_pred H-----HHHHHHHHCCCEEE-------EeCHHHHhHHHHhhhhHHHH-HHHHHHHcCCcccccccc--cHHHHHHHHHhh
Confidence 2 22333332322221 45677777643 332 222222221 145555 7888777765
Q ss_pred --ecCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 447 --SARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 447 --Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
+++. +|.++...|+..+ ..++.+.+....+.++.
T Consensus 251 ~~~~p~-lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l 286 (304)
T PLN02256 251 SSDSFD-LYYGLFMYNPNAT-EELERLELAFDSVKKQL 286 (304)
T ss_pred cCCCHH-HHHHHHHHChHHH-HHHHHHHHHHHHHHHHH
Confidence 8887 9999999998877 66766665544555444
No 39
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.33 E-value=1.4e-12 Score=137.67 Aligned_cols=238 Identities=19% Similarity=0.228 Sum_probs=147.4
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCC-ChhHHHHcCCc---ccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
.++|+|||+|.||+.+|+.|+..|. +|++||+.. ..+.+.+.|+. ..++++.+++||+|++|+|... +..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH-
Confidence 4689999999999999999998884 899999875 23444555642 2367888999999999999532 23332
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQE 378 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~E---P~~~~~~L~~~~nvilTPHig~~T~ea~~ 378 (628)
++....++++.++++++..+.-..+++.+.+..+ ++.+. --+++.| |-.....|+...++++||+-++. .++.+
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~-hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~-~~~~~ 161 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPG-HPLAGTEHSGPDAGFAELFENRWCILTPPEGTD-PAAVA 161 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeC-CCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC-HHHHH
Confidence 4455678999999999876654444555444332 22111 1122222 11123478888999999987654 33222
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHH----------hHHHHHHhcCCCCceEEE
Q 006864 379 GVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKL----------GRLAVQLVSGGSGIKSVK 442 (628)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerl----------G~la~qL~~g~~~~~~v~ 442 (628)
.+..+.+.+..... .++++.+|++- |++-...-. ..-...+.++ +|++.+
T Consensus 162 -----~~~~l~~~lG~~~~-------~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~--gfrd~t 227 (307)
T PRK07502 162 -----RLTAFWRALGARVE-------EMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSAS--GFRDFT 227 (307)
T ss_pred -----HHHHHHHHcCCEEE-------EcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccc--cccccc
Confidence 22333333322111 34455555533 322111111 1112246666 899999
Q ss_pred EEEeecCCCCCCCcccchHHHHHhhccccccCcccccchHhHH
Q 006864 443 LIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTA 485 (628)
Q Consensus 443 i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~iA 485 (628)
++..++.. +|.+....|+..+.-.|+.+......+.++..--
T Consensus 228 Ria~~~~~-~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~ 269 (307)
T PRK07502 228 RIAASDPT-MWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWG 269 (307)
T ss_pred ccccCChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999998 9999999999776556666655555555555433
No 40
>PLN02712 arogenate dehydrogenase
Probab=99.27 E-value=4.5e-12 Score=146.51 Aligned_cols=242 Identities=15% Similarity=0.149 Sum_probs=148.1
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhc-cCCEEEEcCCCCcccccc
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALA-TADFISLHMPLNPTTSKI 300 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~-~aDvV~l~~Plt~~t~~l 300 (628)
.|.++.+++|||||+|+||+.+|++|+++|++|++||+....+.+.+.|+... ++++++. +||+|++|+|. ..+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHH
Confidence 46778999999999999999999999999999999998754345566776544 7888876 59999999994 567777
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC-eeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~ 379 (628)
+.+-.+..||+|++|+|++.++-...+++.+.+..|. +.+ +--.++.|-. ... |+.-..++.++.-....+..+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~-~HPm~G~e~~--~~G-~~~~~~lf~~~~v~~~~~~~~- 516 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILC-THPMFGPESG--KNG-WNNLAFVFDKVRIGSDDRRVS- 516 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEe-eCCCCCcccc--ccc-hhhhhhhccCcEeCCCcchHH-
Confidence 7765555799999999999998767777776665542 221 1112222210 001 111112222222111111211
Q ss_pred HHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccccHH-HHHHHHhHHHHH-------HhcCCCCceEEE----EEEee
Q 006864 380 VAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV-VLAKKLGRLAVQ-------LVSGGSGIKSVK----LIYRS 447 (628)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~-~lAerlG~la~q-------L~~g~~~~~~v~----i~~~G 447 (628)
.++.+.+++..-.. . .-.++++.+|++--+. .|-.-+|....+ +.++ +++.+. .++.+
T Consensus 517 ----~~~~l~~l~~~lGa-~---vv~ms~eeHD~~~A~vShLpHlla~~L~~~~~~~~~~~~~--gfr~l~~Li~Ria~~ 586 (667)
T PLN02712 517 ----RCDSFLDIFAREGC-R---MVEMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTK--GYETLLNLVENTAGD 586 (667)
T ss_pred ----HHHHHHHHHHHcCC-E---EEEeCHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccH--HHHHHHHHHHhhcCC
Confidence 22233333322221 1 1156788887543221 122223443332 2233 577766 88899
Q ss_pred cCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 448 ARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 448 s~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
++. +|++....|+.. ...|+.+......++++.
T Consensus 587 ~p~-l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l 619 (667)
T PLN02712 587 SFD-LYYGLFMYNVNA-MEQLERLDLAFESLKKQL 619 (667)
T ss_pred CHH-HHHHHHHHChHH-HHHHHHHHHHHHHHHHHH
Confidence 998 999999999888 556666655544444444
No 41
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.26 E-value=7.4e-12 Score=130.39 Aligned_cols=221 Identities=25% Similarity=0.314 Sum_probs=152.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEE--EEECCCC-ChhHHHHcCCcc---cCH-HHHhccCCEEEEcCCCCccccccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNV--IAHDPYA-PADKARAVGVEL---VSF-DQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V--~~~d~~~-~~~~a~~~g~~~---~sl-~ell~~aDvV~l~~Plt~~t~~li 301 (628)
-++|+|+|+|.||+.+|+.++..|+.| +++|++. ....+..+|+.. .+. .+.+..||+|++++|... |..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~-~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA-TEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH-HHHHH
Confidence 368999999999999999999999876 5556654 334455566632 233 677888999999999654 44444
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC---CCCccccCCcEEEcCCCCCCcHHHHH
Q 006864 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---KDSKLVQHENVTVTPHLGASTKEAQE 378 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~~L~~~~nvilTPHig~~T~ea~~ 378 (628)
++....+|+|++|+|+++-+--..+++.+.+.++. .+....|+. ++.+++....+|+||.-...
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~------ 148 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE------ 148 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCCCC------
Confidence 33334799999999999988877777777664431 224456653 25689999999999986655
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHH---HHHHHHhH------HHHHHhcCCCCceEEEE
Q 006864 379 GVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYV---VLAKKLGR------LAVQLVSGGSGIKSVKL 443 (628)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~---~lAerlG~------la~qL~~g~~~~~~v~i 443 (628)
.+..+.+.+++.+...+ + -.++++++|++- ||+ .|+..+.. ++..++++ +++++++
T Consensus 149 ---~~~~~~~~~~~~~~ga~-~---v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~--~frd~tR 219 (279)
T COG0287 149 ---KEWVEEVKRLWEALGAR-L---VEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASG--GFRDITR 219 (279)
T ss_pred ---HHHHHHHHHHHHHcCCE-E---EEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhcccc--chhhHHH
Confidence 33556677777664421 1 156788888865 332 22222322 23556676 8999999
Q ss_pred EEeecCCCCCCCcccchHHHHHhhcccccc
Q 006864 444 IYRSARDPDDLDTRILRAMITKGIIEPISA 473 (628)
Q Consensus 444 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 473 (628)
++.+++. +|.+.+..+...+...++.+..
T Consensus 220 ia~~~P~-m~~dI~~~N~~~~l~~i~~~~~ 248 (279)
T COG0287 220 IASSDPE-MYADIQLSNKEALLEAIERFAK 248 (279)
T ss_pred HHcCChH-HHHHHHHhCcHHHHHHHHHHHH
Confidence 9999998 9999999998854444444433
No 42
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.24 E-value=7.6e-12 Score=138.43 Aligned_cols=227 Identities=20% Similarity=0.232 Sum_probs=149.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHH
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~ 305 (628)
++|+||| +|.||+.+|+.|+..|++|.+||+.... ..+.+.|+... ++++.+.+||+|++|+|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 9999999999999999999999987532 34455676544 6888999999999999964 345554 455
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA-KDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~ 384 (628)
...+++++++++++..+....+++.+.+..+. .+....|+. +..+++....+++||+-+.. .+ .
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~~~~-~~--------~ 143 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTEKRS-NP--------W 143 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCCCCC-HH--------H
Confidence 56789999999999987777777777765431 223335542 23467888999999976433 22 2
Q ss_pred HHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHH---HH---HHHh---HHHHHHhcCCCCceEE----EEEE
Q 006864 385 AEAVVGALRGELSATAINAPMVPSEVLSELA------PYVV---LA---KKLG---RLAVQLVSGGSGIKSV----KLIY 445 (628)
Q Consensus 385 ~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~---lA---erlG---~la~qL~~g~~~~~~v----~i~~ 445 (628)
++.+.+++..-... ++ .++++.++++- |++. ++ .++| ..+.+++++ ++++. +++.
T Consensus 144 ~~~v~~ll~~~G~~-v~---~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~--~frd~~~~~tRIa 217 (437)
T PRK08655 144 FDKVKNFLEKEGAR-VI---VTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASP--IYELMIDIIGRIL 217 (437)
T ss_pred HHHHHHHHHHcCCE-EE---ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCh--hhHHHHHHHHHHh
Confidence 23344444332211 11 34455665543 3321 22 2223 223456666 89985 8999
Q ss_pred eecCCCCCCCcccchHHHHHhhccccccCcccccch
Q 006864 446 RSARDPDDLDTRILRAMITKGIIEPISASFINLVNA 481 (628)
Q Consensus 446 ~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA 481 (628)
.+++. +|.+.+..|.. +...++.+......+.++
T Consensus 218 ~~~p~-lw~dI~~~N~~-~~~~l~~~~~~l~~l~~~ 251 (437)
T PRK08655 218 GQNPY-LYASIQMNNPQ-IPEIHETFIKECEELSEL 251 (437)
T ss_pred cCCHH-HHHHHHHhCHH-HHHHHHHHHHHHHHHHHH
Confidence 99998 99999999984 555565554443344333
No 43
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.20 E-value=2.6e-11 Score=126.16 Aligned_cols=224 Identities=17% Similarity=0.242 Sum_probs=136.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCC-hhHHHHcCCc--ccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAP-ADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~~g~~--~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
++|+|||+|.||+.+|+.|+..|. +|++||+... .+.+.+.|+. ..+++++. +||+|++|+|... +...+ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 379999999999999999997774 8999998752 2344556652 33677765 4999999999543 33343 34
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCC---------CCCCccccCCcEEEcCCCCCCcHH
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP---------AKDSKLVQHENVTVTPHLGASTKE 375 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~---------~~~~~L~~~~nvilTPHig~~T~e 375 (628)
... ++++++|++++.-+. .+.+.+.... . ..+....|. .+...|++...++++|+-+.. .+
T Consensus 78 l~~-l~~~~iv~d~gs~k~----~i~~~~~~~~-~---~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~-~~ 147 (275)
T PRK08507 78 LLD-IKENTTIIDLGSTKA----KIIESVPKHI-R---KNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG-EK 147 (275)
T ss_pred Hhc-cCCCCEEEECccchH----HHHHHHHHhc-C---CCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC-HH
Confidence 445 889999999876432 2333333210 0 012223443 122246777788999965443 22
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHHHHHhHH---------HHHHhcCCCCceE
Q 006864 376 AQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGRL---------AVQLVSGGSGIKS 440 (628)
Q Consensus 376 a~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerlG~l---------a~qL~~g~~~~~~ 440 (628)
.. ..++.+.+.+..+.. .++++.++++- |+ -++.-++.. ...+.++ +|++
T Consensus 148 ~~-----~~v~~l~~~~G~~~~-------~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~~~~~~~~~~~~~~~--gfrd 212 (275)
T PRK08507 148 HQ-----ERAKEIFSGLGMRIV-------YMDAKEHDLHAAYISHLPH-IISFALANTVLKEEDERNIFDLAGG--GFRS 212 (275)
T ss_pred HH-----HHHHHHHHHhCCEEE-------EeCHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCChHHHHhhccc--chhh
Confidence 22 122333333322211 34455555533 43 222222222 2355666 8999
Q ss_pred EEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 441 VKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 441 v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
.+++..+++. +|.++...|+..+.-.|+.+......+.++.
T Consensus 213 ~tria~~~p~-l~~~i~~~N~~~~~~~l~~~~~~l~~~~~~l 253 (275)
T PRK08507 213 MSRLAKSSPA-MWSDIFKQNKENVLEAIDEFIKELEQFKQLI 253 (275)
T ss_pred hhhcccCCHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 9999999998766666666655544454444
No 44
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.20 E-value=7.3e-11 Score=112.77 Aligned_cols=103 Identities=33% Similarity=0.516 Sum_probs=75.4
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
...+.||++.|+|||.+|+.+|++|+++|++|++++..+ ...++...|++..+++++++++|+++.++- .+.++.
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccC
Confidence 567999999999999999999999999999999998764 344566779998899999999999988754 467889
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGV-IDEEALV 330 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~-vde~aL~ 330 (628)
.+.|.+||+|+++.|++.-.. +|.+.|.
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred HHHHHHhcCCeEEeccCcCceeEeecccc
Confidence 999999999999999986443 3555433
No 45
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.19 E-value=3.5e-11 Score=115.67 Aligned_cols=113 Identities=22% Similarity=0.329 Sum_probs=87.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc-HHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN-DETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~-~~~l 306 (628)
++|||||+|.||+.+|++|...|++|.+||+... .+...+.|+..+ ++.|++++||+|++++|-.++++.++. .+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 5899999999999999999999999999998752 344455676654 899999999999999997777766652 2367
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
..+++|.++||++....-....+.+.+.+..+ ..+|
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vd 117 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVD 117 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc--eeee
Confidence 88999999999999999999999999987665 4445
No 46
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.17 E-value=1.2e-10 Score=121.17 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=103.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC--hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~ 304 (628)
.+|||||+|.||..+|++|...|++|.+||+... .+.....|.... +..|+.++||+|++|+|..++.+..+. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 4799999999999999999999999999999863 344556687655 788999999999999999999888774 67
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 352 (628)
.++.||+|.++||++.........+.+++++..+...---|.+..+..
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A 128 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGA 128 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhh
Confidence 899999999999999999999999999999987743322366666543
No 47
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.15 E-value=1.2e-10 Score=122.16 Aligned_cols=121 Identities=16% Similarity=0.264 Sum_probs=96.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||+.+|+.+...|++|++||++.. .+...+.|+..+ ++++++++||+|++|+|....++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5799999999999999999999999999998753 233455566544 789999999999999998877777653 346
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
+..+++|.++||+++......+++.+.+++..+...--.|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 778999999999999999888899999887655333333555554
No 48
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.13 E-value=1.8e-10 Score=120.65 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=89.9
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccc-c-HHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIF-N-DETF 306 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li-~-~~~l 306 (628)
+|||||+|.||+.+|++|...|++|.+||+... .+...+.|... .+.++++++||+|++|+|..+.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 589999999999999999999999999998752 23344556543 478899999999999999877777664 3 3467
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
..+++|+++||++++...+.+++.+.+++..+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999987644
No 49
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.06 E-value=2.3e-10 Score=121.53 Aligned_cols=121 Identities=25% Similarity=0.368 Sum_probs=90.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
..|+||+|||||+|+||+++|+.|+.+|++|+++++.. ....+.+.|+...+.++++++||+|++++|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 46899999999999999999999999999999886643 3345566788777999999999999999996654 67777
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~ 355 (628)
++.+..|++|++| -.+.|--+ ..+. ..-+...||+-..|..+.+
T Consensus 92 ~~I~~~Lk~g~iL-~~a~G~~i--~~~~------~~p~~~~~Vi~vaPn~Pg~ 135 (330)
T PRK05479 92 EEIEPNLKEGAAL-AFAHGFNI--HFGQ------IVPPADVDVIMVAPKGPGH 135 (330)
T ss_pred HHHHhcCCCCCEE-EECCCCCh--hhce------eccCCCCcEEEeCCCCCch
Confidence 7888899999988 44445211 1110 1113445777777654333
No 50
>PLN02712 arogenate dehydrogenase
Probab=99.04 E-value=3.1e-10 Score=131.42 Aligned_cols=238 Identities=16% Similarity=0.154 Sum_probs=146.6
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHh-ccCCEEEEcCCCCccccccccHH
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQAL-ATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell-~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
-+.++|||||+|+||+.+|+.|+.+|++|++||+......+.+.|+... ++++++ .+||+|++|+|. ..+..++..-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 3457899999999999999999999999999998755555667787544 788866 569999999995 4577777664
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHH
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGV 380 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~----~~~L~~~~nvilTPHig~~T~ea~~~~ 380 (628)
.+..||++++|+|+++-+..-.+++.+.+..+. ++....|+.. .+. |..-.++++|.+.....+..+.+
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~------~~v~~HPMaG~e~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 201 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDF------DIICSHPMFGPQSAKHG-WDGLRFVYEKVRIGNEELRVSRC 201 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCC------eEEeeCCcCCCccccch-hccCcEEEeeccCCCccccHHHH
Confidence 456799999999999877655566666665442 2233344421 112 22234778876543222111111
Q ss_pred HHHHHHHHHHHHcCCCCCCcccCCCCCcccccccccHH-HHHHHHhHHHHHHhcCCCCc---------eEEEEEEeecCC
Q 006864 381 AIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV-VLAKKLGRLAVQLVSGGSGI---------KSVKLIYRSARD 450 (628)
Q Consensus 381 ~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~-~lAerlG~la~qL~~g~~~~---------~~v~i~~~Gs~a 450 (628)
....++...+..+.. .++++.+|++.-++ .|-.-+|+.+..+.-+..++ +-+++++.+++.
T Consensus 202 --~~l~~l~~~lGa~v~-------~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~ 272 (667)
T PLN02712 202 --KSFLEVFEREGCKMV-------EMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFD 272 (667)
T ss_pred --HHHHHHHHHcCCEEE-------EeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHH
Confidence 111233333322222 56778887755322 22223444433322100011 113556778887
Q ss_pred CCCCCcccchHHHHHhhccccccCcccccchHh
Q 006864 451 PDDLDTRILRAMITKGIIEPISASFINLVNADF 483 (628)
Q Consensus 451 ~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~ 483 (628)
+|++....|+.+ ...|+.+..+...++.+.+
T Consensus 273 -L~~dI~~~N~~~-~~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 273 -LYYGLFMYNKNS-LEMLERLDLAFEALRKQLF 303 (667)
T ss_pred -HHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999944 4467677666556666654
No 51
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.04 E-value=8.2e-10 Score=116.30 Aligned_cols=113 Identities=18% Similarity=0.281 Sum_probs=93.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCcc-cCHHHHhccCCEEEEcCCCCcccccccc--HHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN--DET 305 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~--~~~ 305 (628)
++|||||+|.||..+|++|...|++|.+||+.... +...+.|... .+..+++++||+|++|+|....++..+. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 47999999999999999999999999999987532 3334456543 4788999999999999997766666653 346
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
+..+++|.++||++++.....+.+.+.+.+..+. .+|
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ld 118 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMD 118 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence 7779999999999999999999999999887764 455
No 52
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.03 E-value=9.3e-10 Score=120.38 Aligned_cols=104 Identities=29% Similarity=0.450 Sum_probs=89.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
+..+.|++++|+|+|.||+.+|++++++|++|+++|+.. ....+...|+..+++++.+..+|+|+.+.. +.+.++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 556899999999999999999999999999999998765 345677789877788899999999998753 467888
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 006864 303 DETFAKMKKGVRIVNVARGGV-IDEEALVR 331 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~-vde~aL~~ 331 (628)
...|..||+|++++|++++.+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 77777654
No 53
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.02 E-value=3.2e-10 Score=123.19 Aligned_cols=215 Identities=14% Similarity=0.108 Sum_probs=137.7
Q ss_pred cCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 228 ~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
..++|+||| +|.||+.+|+.|+..|..|.+||+... .+.++++++||+|++|+|... +..++ ++ +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------~~~~~~~~~aDlVilavP~~~-~~~~~-~~-l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------DRAEDILADAGMVIVSVPIHL-TEEVI-AR-L 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HH-H
Confidence 458999999 999999999999999999999997521 246778899999999999664 44455 33 4
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCC-CCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 006864 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK-DSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385 (628)
Q Consensus 307 ~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~-~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~ 385 (628)
..+++|++|+++++.+..-.+++.+.+. +.+ .+..|+.. ....+....++++|+ ...++.+ .+
T Consensus 163 ~~l~~~~iv~Dv~SvK~~~~~~~~~~~~-~~f-------vg~HPm~G~~~~~~~~~~vv~~~~---~~~~~~~-----~~ 226 (374)
T PRK11199 163 PPLPEDCILVDLTSVKNAPLQAMLAAHS-GPV-------LGLHPMFGPDVGSLAKQVVVVCDG---RQPEAYQ-----WL 226 (374)
T ss_pred hCCCCCcEEEECCCccHHHHHHHHHhCC-CCE-------EeeCCCCCCCCcccCCCEEEEcCC---CCchHHH-----HH
Confidence 4489999999999876655555555433 222 33344321 122345556788774 2233322 23
Q ss_pred HHHHHHHcCCCCCCcccCCCCCcccccccc------cHHH-HH--HHHh------HHHHHHhcCCCCceE----EEEEEe
Q 006864 386 EAVVGALRGELSATAINAPMVPSEVLSELA------PYVV-LA--KKLG------RLAVQLVSGGSGIKS----VKLIYR 446 (628)
Q Consensus 386 ~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~-lA--erlG------~la~qL~~g~~~~~~----v~i~~~ 446 (628)
..+...+..... .++++.++++- |++. ++ ..++ .....+.++ ++++ +++++.
T Consensus 227 ~~l~~~lG~~v~-------~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~--~fr~~la~~tRia~ 297 (374)
T PRK11199 227 LEQIQVWGARLH-------RISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSP--IYRLELAMVGRLFA 297 (374)
T ss_pred HHHHHHCCCEEE-------ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCh--HHHHHHHHHHHHHc
Confidence 344444432222 56677777644 3221 11 1111 001123344 6888 899999
Q ss_pred ecCCCCCCCcccchHHHHHhhccccccCcccccchHh
Q 006864 447 SARDPDDLDTRILRAMITKGIIEPISASFINLVNADF 483 (628)
Q Consensus 447 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~~ 483 (628)
+++. +|.++...|+..+ ..|+.+......+.++..
T Consensus 298 ~~p~-lw~dI~~~N~~~~-~~l~~~~~~l~~l~~~l~ 332 (374)
T PRK11199 298 QDPQ-LYADIIMSSPENL-ALIKRYYQRFGEALELLE 332 (374)
T ss_pred CCHH-HHHHHHHhChhHH-HHHHHHHHHHHHHHHHHH
Confidence 9998 9999999988877 677666665555555554
No 54
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.01 E-value=1.3e-09 Score=114.96 Aligned_cols=111 Identities=20% Similarity=0.334 Sum_probs=92.1
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhcc---CCEEEEcCCCCccccccccHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALAT---ADFISLHMPLNPTTSKIFNDET 305 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~---aDvV~l~~Plt~~t~~li~~~~ 305 (628)
+|||||+|+||+.+|++|...|++|.+||+... .+...+.|+... ++++++++ +|+|++|+|..+.++.++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 699999999999999999999999999998752 233445566544 78888876 699999999776777777 456
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 306 l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
+..+++|.++||+++....+...+.+.+.+..+ ..+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGI--HYVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCC--eEEe
Confidence 777999999999999999999999999987665 3466
No 55
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.99 E-value=1.1e-09 Score=128.74 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=139.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCC-hhHHHHcCCc---ccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAP-ADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~-~~~a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|||||+|.||+++|+.++..| .+|++||+... .+.+.+.|+. ..++++++++||+|++|+|.. .....+ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 78999999999999999999888 58999998753 3445556653 336888899999999999953 233333 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC---------CCCccccCCcEEEcCCCCCCcH
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---------KDSKLVQHENVTVTPHLGASTK 374 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~---------~~~~L~~~~nvilTPHig~~T~ 374 (628)
+....++++++|++++..+....+.+.+.+.... ..+..+.|.. .+..||...+++++|+-... .
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~-~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD-P 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC-H
Confidence 3334578899999999877555566666654322 2345556542 24478899999999986654 2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cH---HHHHHHHh-----HHHHHHhcCCCCceE
Q 006864 375 EAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PY---VVLAKKLG-----RLAVQLVSGGSGIKS 440 (628)
Q Consensus 375 ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~---~~lAerlG-----~la~qL~~g~~~~~~ 440 (628)
+..+ .++++.+-+ |..+ + .++++.+|.+- |+ ..+++.+. ..+..++++ ++++
T Consensus 156 ~~~~-----~~~~l~~~~-G~~~---~---~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~--~f~~ 221 (735)
T PRK14806 156 AALA-----RVDRLWRAV-GADV---L---HMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAG--GFRD 221 (735)
T ss_pred HHHH-----HHHHHHHHc-CCEE---E---EcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhcc--chhc
Confidence 2222 223333322 2211 1 33455555542 43 12333331 234567777 8999
Q ss_pred EEEEEeecCCCCCCCcccchHHHH
Q 006864 441 VKLIYRSARDPDDLDTRILRAMIT 464 (628)
Q Consensus 441 v~i~~~Gs~a~~~~~~~~~~~a~l 464 (628)
.++...+++. +|.+....+...+
T Consensus 222 ~tRia~~~p~-~~~di~~~n~~~~ 244 (735)
T PRK14806 222 FTRIAASDPV-MWHDIFLANKEAV 244 (735)
T ss_pred ccccccCCHH-HHHHHHHHhHHHH
Confidence 9999999988 9999988887654
No 56
>PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein. This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A.
Probab=98.97 E-value=3.3e-10 Score=108.43 Aligned_cols=116 Identities=8% Similarity=-0.021 Sum_probs=76.2
Q ss_pred HHHHhHHHHHHhcCC---CCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCccccc------------chHhHH
Q 006864 421 AKKLGRLAVQLVSGG---SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLV------------NADFTA 485 (628)
Q Consensus 421 AerlG~la~qL~~g~---~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlv------------NA~~iA 485 (628)
.-|+|+.++|++.+. ..+.+|++.++||++ .|+++|++|+|++.||| ++..+++++. |.+.++
T Consensus 20 pmra~~~f~~~l~~~~~l~~~~~v~v~l~GSla-~Tg~GHgTD~Av~~GLl-G~~p~~~~~~~~~~~~~~~~~~~~L~l~ 97 (157)
T PF03315_consen 20 PMRAARRFRQLLGEQGLLPQVARVRVDLYGSLA-ATGKGHGTDRAVLAGLL-GEDPEDVDPDSIPERLERIREENRLRLA 97 (157)
T ss_dssp HHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHH-HT-TTSSHHHHHHHHCT-T--TTTS-GGGHHHHHHHHHHHTEEEET
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEeechhH-HhCCCcccchhheeccc-ccCCcccchhhhHHHHHHhhcCCEEEEC
Confidence 347888888888652 148999999999999 99999999999999999 5566668888 444444
Q ss_pred hhcCceEE------EEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECc
Q 006864 486 KQKGLRIS------EERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGS 549 (628)
Q Consensus 486 ke~GI~i~------~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idg 549 (628)
.++.|.+. |.... ....|||++++++.+ ..++..+++.+.|+| |.+++.+++|
T Consensus 98 ~~~~i~f~~~~dI~f~~~~---~~~~HPNtm~~~a~d--------~~g~~~~~~t~ySIGGGfI~~~~~~~ 157 (157)
T PF03315_consen 98 GEREIPFDPERDIIFHPEE---FLPFHPNTMRFEAYD--------ADGGELLEETYYSIGGGFIVIEEENG 157 (157)
T ss_dssp TTEEEE--HHHHEEEETT------SS-SSEEEEEEE---------TTS-EEEEEEEEEETTTEEEETTTT-
T ss_pred CCcccccccCCCeEEEecc---CCCCCCCEEEEEEEe--------CCCCEEEEEEEEEeCCeEEEEeeecC
Confidence 44443333 22211 123799999999973 133356899999998 7888876654
No 57
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.93 E-value=4.4e-09 Score=110.97 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=92.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhcc---CCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALAT---ADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~---aDvV~l~~Plt~~t~~li~~~ 304 (628)
++|||||+|.||+.+|++|...|.+|.+||++.. .+...+.|+... +++++++. +|+|++++|..+.++.++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 3799999999999999999999999999999853 233455676655 78888876 699999999776677766 46
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD 344 (628)
.+..+++|.++||++++.......+.+.+++..+. .+|
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~d 117 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVD 117 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEe
Confidence 67789999999999999999999999999887763 446
No 58
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.89 E-value=6.5e-09 Score=109.36 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=89.0
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHHHh
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DETFA 307 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~l~ 307 (628)
+|||||+|+||+.+|++|...|++|.+||+....+...+.|...+ +..+++++||+|++++|-.++.+..+. ...+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 699999999999999999999999999998754444455666543 788999999999999997776666552 23567
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 308 ~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.+++|.++||++....-....+.+.+.+..+
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG 112 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 7899999999999999988889898877644
No 59
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.83 E-value=1.3e-08 Score=113.84 Aligned_cols=140 Identities=11% Similarity=0.121 Sum_probs=108.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH----cCCc----ccCHHHHhcc---CCEEEEcCCCCccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA----VGVE----LVSFDQALAT---ADFISLHMPLNPTT 297 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~g~~----~~sl~ell~~---aDvV~l~~Plt~~t 297 (628)
.+|||||+|.||+.+|++|...|++|.+||+.... +...+ .|.. ..+++|+++. +|+|++++|-.+.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 36999999999999999999999999999997532 22222 1532 3378888876 99999999988888
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHH
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~ 377 (628)
..++ ...+..|++|.++||++....-+...+.+.+++..+.....=|++.++..... + .+ +.+.+.+++
T Consensus 87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G-----~-~i----m~GG~~~a~ 155 (493)
T PLN02350 87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNG-----P-SL----MPGGSFEAY 155 (493)
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCC-----C-eE----EecCCHHHH
Confidence 8887 56788899999999999999999999999999887766666688887643222 3 22 234566666
Q ss_pred HHH
Q 006864 378 EGV 380 (628)
Q Consensus 378 ~~~ 380 (628)
+++
T Consensus 156 ~~v 158 (493)
T PLN02350 156 KNI 158 (493)
T ss_pred HHH
Confidence 554
No 60
>PRK15040 L-serine dehydratase TdcG; Provisional
Probab=98.82 E-value=2.1e-08 Score=109.61 Aligned_cols=147 Identities=10% Similarity=0.030 Sum_probs=102.0
Q ss_pred HHHHhHH-HHHHhcCC--CCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccch---HhHHhhc------
Q 006864 421 AKKLGRL-AVQLVSGG--SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNA---DFTAKQK------ 488 (628)
Q Consensus 421 AerlG~l-a~qL~~g~--~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA---~~iAke~------ 488 (628)
+-|+|+. +++|.... ..+++++++++|||+ .|+++|++|+|++.||+ ++.++++++.++ +.+++++
T Consensus 22 Pmraa~~F~~~L~~~~~l~~~~~v~i~LyGSLA-~TGkGHgTD~Avl~GLl-G~~Pd~~~~~~~~~~~~~~~~~~~l~l~ 99 (454)
T PRK15040 22 PMNAGKSFIDRLESSGLLTATSHIVVDLYGSLS-LTGKGHATDVAIIMGLA-GNSPQDVVIDEIPAFIELVTRSGRLPVA 99 (454)
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHHhhc-cCCcccCChhhhHHHHHHHHHcCccccC
Confidence 3566665 55665410 168999999999999 99999999999999999 667778999998 7777777
Q ss_pred -Cc---------eEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeecC
Q 006864 489 -GL---------RISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLE 557 (628)
Q Consensus 489 -GI---------~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~ 557 (628)
|+ ++.|.+... ..|||++++++.+ .++..++.++.|+| |.+++-+ ++.-+. ..
T Consensus 100 ~G~~~i~f~~~~di~f~~~~l----p~HPN~m~~~a~~---------~~~~~~e~~~ySIGGGfI~~~~--~~~~~~-~~ 163 (454)
T PRK15040 100 SGAHIVDFPVAKNIIFHPEML----PRHENGMRITAWK---------GQEELLSKTYYSVGGGFIVEEE--HFGLSH-DV 163 (454)
T ss_pred CCCccccCCCCCceEECCCCC----CCCCCeeEEEEEc---------CCCcEEEEEEEEcCCceeeecc--cccccc-CC
Confidence 77 678864432 2699999999983 33345689999998 6666542 111110 00
Q ss_pred CcEEEEeccCCC---CchhhHHhhhhcCCccccceEEe
Q 006864 558 GNLILCRQVDQP---GMIGKVGNILGEHNVNVNFMSVG 592 (628)
Q Consensus 558 ~~~Llv~~~D~P---GvIa~V~~iL~~~~INIa~m~v~ 592 (628)
..+.| --...+...-.+++++|..+-+.
T Consensus 164 -------~~~~py~f~s~~ell~~c~~~~~~i~e~v~~ 194 (454)
T PRK15040 164 -------ETSVPYDFHSAGELLKMCDYNGLSISGLMMH 194 (454)
T ss_pred -------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 11222 23445666667788888877553
No 61
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.79 E-value=1.5e-08 Score=107.58 Aligned_cols=95 Identities=26% Similarity=0.395 Sum_probs=73.2
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+||+|||||+|+||+++|+.|+.+|++|+++++.. ..+.+.+.|+...+..+++++||+|++++|-.. ....+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~-~~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEV-QHEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHh-HHHHHHHH
Confidence 579999999999999999999999999987754432 234445678877788999999999999999432 23444556
Q ss_pred HHhcCCCCcEEEEcCCCch
Q 006864 305 TFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~ 323 (628)
....|+++. +|.++-|=-
T Consensus 80 i~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHhhCCCCc-EEEEeCCcc
Confidence 667788886 777776643
No 62
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.74 E-value=1.2e-08 Score=111.36 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=79.0
Q ss_pred cccccccc-e-eeecCCeEEEEecChhHHHHHHHHHcCCCEEEE------ECCCC-ChhHHHHcCCcccCHHHHhccCCE
Q 006864 216 KWLRSKYV-G-VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA------HDPYA-PADKARAVGVELVSFDQALATADF 286 (628)
Q Consensus 216 ~W~~~~~~-g-~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~------~d~~~-~~~~a~~~g~~~~sl~ell~~aDv 286 (628)
-|.+..|. + ..|+||||+|||+|.+|+.-|..|+..|++|++ .|... +.+.+.+.|+...+++|++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 48877652 2 469999999999999999777777777777763 22222 344556678888899999999999
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEE
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN 317 (628)
|++.+|.+ + ++.+.++.+..||+|+.|.=
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEEe
Confidence 99999988 3 77778999999999998753
No 63
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.74 E-value=4.9e-08 Score=102.98 Aligned_cols=108 Identities=14% Similarity=0.250 Sum_probs=85.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHH---hccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-VSFDQA---LATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~-~sl~el---l~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
++|||||+|.||..+|++|...|++|.+||+... .+...+.+... .+++++ +.++|+|++++|-. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 3799999999999999999999999999998753 23334445432 355554 45789999999966 667666 46
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
....+++|.++||++.+...+...+.+.+++..+.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 66778999999999999888888888888776653
No 64
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.71 E-value=3.4e-08 Score=103.57 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=85.1
Q ss_pred EEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--HHHHhcC
Q 006864 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DETFAKM 309 (628)
Q Consensus 234 IIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~--~~~l~~m 309 (628)
|||+|.||..+|++|...|++|.+||+... .+...+.|+... ++.+++++||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 689999999999999999999999998753 234455566544 889999999999999997666666652 4566788
Q ss_pred CCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 310 KKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 310 k~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++|.++||++....-....+.+.+++..+
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~ 109 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGA 109 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998887777888888876544
No 65
>PLN02858 fructose-bisphosphate aldolase
Probab=98.70 E-value=6.1e-08 Score=120.27 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=91.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccc--cHH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIF--NDE 304 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li--~~~ 304 (628)
.++|||||+|.||..||++|...|++|.+||++... +.....|.. ..+..+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 489999999999999999999999999999987532 334445654 3488999999999999999888888876 356
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+..|++|.++||++....-..+.+.+.+++
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 7888999999999999998888899998887
No 66
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.68 E-value=4.2e-08 Score=80.70 Aligned_cols=67 Identities=36% Similarity=0.604 Sum_probs=62.4
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
+++.+.|+||.+++|+++|+++|+||.+|.+.+...++.+.+++.+|.+.+++++++|+++++|.++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v~~v 68 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSA 68 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCccEE
Confidence 6778999999999999999999999999999887678899999999999898999999999999875
No 67
>PLN02858 fructose-bisphosphate aldolase
Probab=98.68 E-value=5.4e-08 Score=120.69 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=98.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccc--cH
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIF--ND 303 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li--~~ 303 (628)
..++||+||+|.||..||++|...|++|.+||+... .+...+.|+..+ +..++.++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 357899999999999999999999999999999753 234455676554 89999999999999999888888776 34
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC--eeEEEee--ccCCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV--VAQAALD--VFTEE 349 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~--i~ga~lD--V~~~E 349 (628)
..+..+++|.++||++....-....+.+.+++.. + ..+| |++.-
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~--~~lDaPVsGg~ 130 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQI--FLVDAYVSKGM 130 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCce--EEEEccCcCCH
Confidence 6788899999999999999999999999998765 5 3455 44433
No 68
>PRK15023 L-serine deaminase; Provisional
Probab=98.68 E-value=7e-08 Score=105.54 Aligned_cols=146 Identities=11% Similarity=-0.024 Sum_probs=98.6
Q ss_pred HHHHhHH-HHHHhcC--CCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcc------------cccchHhHH
Q 006864 421 AKKLGRL-AVQLVSG--GSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFI------------NLVNADFTA 485 (628)
Q Consensus 421 AerlG~l-a~qL~~g--~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v------------nlvNA~~iA 485 (628)
+.|+|+. +++|... ...+++++++++|||+ .|+++|++|+|++.||+ ++.++++ +..+++.++
T Consensus 22 Pmraa~~F~~~L~~~~~l~~~~rv~v~LyGSLA-~TGkGHGTD~Avl~GL~-G~~Pd~~d~~~~~~~~~~~~~~~~l~la 99 (454)
T PRK15023 22 PMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLS-LTGKGHHTDIAIIMGLA-GNEPATVDIDSIPGFIRDVEERERLLLA 99 (454)
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHhhhc-cCCCCCcChhhhHHHHHHHhhcCccccC
Confidence 4567775 6777631 1268999999999999 99999999999999999 5566667 568888888
Q ss_pred hhcCceEEEE--------EeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEEC-CeeEEEEECceeEEeec
Q 006864 486 KQKGLRISEE--------RVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASL 556 (628)
Q Consensus 486 ke~GI~i~~~--------~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~~I~~Idgf~Vd~~~ 556 (628)
+++ +++.|. +... ..|||++++++.+ .++...+.++.|+| |.+++-+=.+.+ . .
T Consensus 100 ~~~-~~i~F~~~~di~f~~~~l----p~HPN~m~f~a~~---------~~~~~~e~~~ySIGGGfI~~~~~~~~~--~-~ 162 (454)
T PRK15023 100 QGR-HEVDFPRDNGMRFHNGNL----PLHENGMQIHAYN---------GDEVVYSKTYYSIGGGFIVDEEHFGQD--A-A 162 (454)
T ss_pred CCC-ceeecCcccceeECCCCC----CCCCCeeEEEEEe---------CCCcEEEEEEEEcCCceeeeccccccc--c-c
Confidence 665 677762 2221 2699999999983 33345699999998 777764211111 0 0
Q ss_pred CCcEEEEeccCCCC---chhhHHhhhhcCCccccceEEe
Q 006864 557 EGNLILCRQVDQPG---MIGKVGNILGEHNVNVNFMSVG 592 (628)
Q Consensus 557 ~~~~Llv~~~D~PG---vIa~V~~iL~~~~INIa~m~v~ 592 (628)
. ..+.|- -...+...-.++++.|..+-+.
T Consensus 163 ~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~~ 194 (454)
T PRK15023 163 N-------EVSVPYPFKSATELLAYCNETGYSLSGLAMQ 194 (454)
T ss_pred C-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 0 112232 3444556666778888776553
No 69
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.67 E-value=2e-07 Score=97.99 Aligned_cols=130 Identities=23% Similarity=0.218 Sum_probs=88.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcC-------------CcccCHHHHhccC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVG-------------VELVSFDQALATA 284 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------~~~~sl~ell~~a 284 (628)
++|||||+|.||..+|+.+...|++|++||+.... +. ..+.| ....+-.+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987522 11 11111 1222333568999
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCCc
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHEN 362 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~n 362 (628)
|+|+.|+|-.++.+..+-.+..+.++++++|+ |++.-. ...+.+.++. .++.|+ .. ..|+. . .+-
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~~~r~~g~--h~--~~pp~-~-----~~l 151 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQRPQQVIGM--HF--MNPPP-I-----MKL 151 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCCCcceEEE--ec--cCCcc-c-----Cce
Confidence 99999999888888877777777799999887 776554 3445555543 355333 22 23321 1 234
Q ss_pred EEEcCCCCCC
Q 006864 363 VTVTPHLGAS 372 (628)
Q Consensus 363 vilTPHig~~ 372 (628)
+.+.|+-++.
T Consensus 152 veiv~g~~t~ 161 (295)
T PLN02545 152 VEIIRGADTS 161 (295)
T ss_pred EEEeCCCCCC
Confidence 6777875544
No 70
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.66 E-value=3.3e-08 Score=94.30 Aligned_cols=90 Identities=32% Similarity=0.495 Sum_probs=67.2
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+||+|+|||||..|.+.|..|+.-|++|++-.+.. +.+++++.|++..++.|+.++||+|.+.+|-.. ...++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~-q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEV-QPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHH-HHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHH-HHHHHHHH
Confidence 679999999999999999999999999998765543 457788999999999999999999999999322 23455677
Q ss_pred HHhcCCCCcEEEE
Q 006864 305 TFAKMKKGVRIVN 317 (628)
Q Consensus 305 ~l~~mk~gailIN 317 (628)
....||+|..|+=
T Consensus 81 I~p~l~~G~~L~f 93 (165)
T PF07991_consen 81 IAPNLKPGATLVF 93 (165)
T ss_dssp HHHHS-TT-EEEE
T ss_pred HHhhCCCCCEEEe
Confidence 7778999987764
No 71
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.65 E-value=8.8e-08 Score=106.93 Aligned_cols=121 Identities=10% Similarity=0.169 Sum_probs=97.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc----CCc---ccCHHHHhc---cCCEEEEcCCCCcccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV----GVE---LVSFDQALA---TADFISLHMPLNPTTS 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~----g~~---~~sl~ell~---~aDvV~l~~Plt~~t~ 298 (628)
.+|||||+|.||+.+|++|...|++|.+||+.... +...+. |.. ..+++++++ ++|+|++++|-.+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 47999999999999999999999999999987532 222221 422 347888886 5899999999888888
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 351 (628)
.++ ++.+..|++|.+|||++.+.--|...+.+.+++..+.....=|.+.++.
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~g 133 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEG 133 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHH
Confidence 887 5677789999999999999999999999999988775555557776643
No 72
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.64 E-value=4.5e-07 Score=95.08 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=90.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-------------------------cCCc-ccCHHHHhc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-------------------------VGVE-LVSFDQALA 282 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------------~g~~-~~sl~ell~ 282 (628)
++|+|||.|.||..+|..+...|.+|..||+.... +.+.+ ..+. ..++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 58999999999999999999999999999986421 11110 0111 237888899
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
.||+|+.++|-..+.+.-+-++....++++++|+..+++- ....+.+.++.. ++.| +.. .+|.+..+
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~r~vg--~Hf--------~~p~~~~~ 151 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPEKFLA--LHF--------ANEIWKNN 151 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcccEEE--EcC--------CCCCCcCC
Confidence 9999999999665555544455556689999886554444 334566665432 4434 332 23455778
Q ss_pred cEEEcCCCCCC
Q 006864 362 NVTVTPHLGAS 372 (628)
Q Consensus 362 nvilTPHig~~ 372 (628)
.+.+.||-..+
T Consensus 152 lvevv~~~~t~ 162 (287)
T PRK08293 152 TAEIMGHPGTD 162 (287)
T ss_pred eEEEeCCCCCC
Confidence 89999987765
No 73
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.63 E-value=3.8e-09 Score=109.19 Aligned_cols=219 Identities=18% Similarity=0.172 Sum_probs=134.4
Q ss_pred HHHHHHcCC--CEEEEECCCC-ChhHHHHcCCcc--cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEc
Q 006864 244 VARRAKGLG--MNVIAHDPYA-PADKARAVGVEL--VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 244 vA~~l~~~G--~~V~~~d~~~-~~~~a~~~g~~~--~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 318 (628)
+|+.|+..| .+|++||+.. ..+.+.+.|+.. .+-.+.+++||+|++|+|... +..++ ++....+++|++|+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~-~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA-IEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH-HHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHhhhhcCCCcEEEEe
Confidence 467777666 8999999986 445566778642 233678999999999999543 33333 4444568999999999
Q ss_pred CCCchhcHHHHHHHHhCC-CeeEEEee-ccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006864 319 ARGGVIDEEALVRALDSG-VVAQAALD-VFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (628)
Q Consensus 319 aRg~~vde~aL~~aL~~g-~i~ga~lD-V~~~E---P~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~ 393 (628)
+.-+.--.+++.+.+..+ ++.| .. -|+.| |..++..||+..++++||+-... ....+.+.++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~--~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~---------~~~~~~~~~l~~ 147 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVG--GHPMAGPEKSGPEAADADLFEGRNWILCPGEDTD---------PEALELVEELWE 147 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEE--EEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS----------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcccceee--cCCCCCCccccchhhcccccCCCeEEEeCCCCCh---------HHHHHHHHHHHH
Confidence 999988888888888733 3332 22 23332 11346689999999999998744 223445555554
Q ss_pred CCCCCCcccCCCCCcccccccc------cHHHHHHHH---------hHHHHHHhcCCCCceEEEEEEeecCCCCCCCccc
Q 006864 394 GELSATAINAPMVPSEVLSELA------PYVVLAKKL---------GRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRI 458 (628)
Q Consensus 394 g~~~~~~vn~p~~~~~~~~~~~------p~~~lAerl---------G~la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~ 458 (628)
.-.. .+ -.++++.+|++- |++....-. .....+++++ +++++++++.+++. +|.+...
T Consensus 148 ~~Ga-~~---~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~--~frd~tRia~~~p~-l~~~I~~ 220 (258)
T PF02153_consen 148 ALGA-RV---VEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGG--GFRDMTRIASSDPE-LWADIFL 220 (258)
T ss_dssp HCT--EE---EE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTH--HHHHHHGGGGS-HH-HHHHHHH
T ss_pred HCCC-EE---EEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcch--hHHhhcccccCChH-HHHHHHH
Confidence 3332 11 246788888865 332221111 1123456666 79999988888887 8999999
Q ss_pred chHHHHHhhccccccCcccccchH
Q 006864 459 LRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 459 ~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
.|+..+...|+.+.....++.++.
T Consensus 221 ~N~~~~~~~l~~~~~~L~~l~~~l 244 (258)
T PF02153_consen 221 SNPENLLEALDEFIKELNELREAL 244 (258)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999866666766666545555544
No 74
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.63 E-value=8.5e-08 Score=100.95 Aligned_cols=102 Identities=31% Similarity=0.469 Sum_probs=84.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.-+.||++.|.|||..|+-+|.+|++.|++|++..-.+ ....+.-.|++...+++....+|+++.++ .+++.|..
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~T----GnkdVi~~ 280 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTAT----GNKDVIRK 280 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEcc----CCcCccCH
Confidence 45899999999999999999999999999999974332 23445667899999999999999999865 36899999
Q ss_pred HHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 006864 304 ETFAKMKKGVRIVNVARGGV-IDEEALV 330 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~-vde~aL~ 330 (628)
+.|..||+|+++-|.+.=.+ ||.+.|.
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~ 308 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLE 308 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHH
Confidence 99999999999999875433 4444443
No 75
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.61 E-value=1.3e-07 Score=97.85 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=93.8
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc--
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN-- 302 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~-- 302 (628)
..-++||+||+|.||..++..|-..|++|.+||++.+. ..+.+.|.+.. +..|+.+.||+|+.++|...+.+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 35789999999999999999999999999999998743 44566787655 799999999999999998888777763
Q ss_pred HHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhCCCe
Q 006864 303 DETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 303 ~~~l~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i 338 (628)
...|...++|... |+.+.-...-...|.+++.....
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 3567777788777 89998888878888888887655
No 76
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.60 E-value=4.8e-07 Score=94.86 Aligned_cols=131 Identities=19% Similarity=0.199 Sum_probs=88.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-------HcC-----------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-------AVG-----------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-------~~g-----------------~~~-~sl~ell~~ 283 (628)
++|+|||+|.||..+|..+...|++|++||+.... +... ..+ +.. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999987422 1111 011 112 367889999
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCc
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN 362 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~n 362 (628)
||+|+.|+|-..+.+..+-.+..+.+++++++ +|++.-.+ ..+.+.++. .-...++..| .|.. .. +-
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv~-~~-----~L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPVH-KM-----KL 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCcc-cC-----ce
Confidence 99999999977666555545556678999877 78876444 445555543 2222555656 3542 22 44
Q ss_pred EEEcCCCCCC
Q 006864 363 VTVTPHLGAS 372 (628)
Q Consensus 363 vilTPHig~~ 372 (628)
+.+.|+-...
T Consensus 150 ve~v~g~~t~ 159 (288)
T PRK09260 150 VELIRGLETS 159 (288)
T ss_pred EEEeCCCCCC
Confidence 6677765555
No 77
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.59 E-value=2.6e-07 Score=92.02 Aligned_cols=108 Identities=28% Similarity=0.358 Sum_probs=79.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-HHHcCCcccCHHHHhc-cCCEEEEcCCCCcccccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-ARAVGVELVSFDQALA-TADFISLHMPLNPTTSKI 300 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~g~~~~sl~ell~-~aDvV~l~~Plt~~t~~l 300 (628)
+.+++||+++|+|+|++|+.+|++|..+|++|+++|+.... .. ....+.+.++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 56789999999999999999999999999999999987532 22 2233666666777775 7999876654 467
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++++.++.|+ .-+++.-+-+.+-|.+ -.+.|++..+
T Consensus 98 I~~~~~~~l~-~~~v~~~AN~~~~~~~-~~~~L~~~Gi 133 (200)
T cd01075 98 INDDTIPQLK-AKAIAGAANNQLADPR-HGQMLHERGI 133 (200)
T ss_pred cCHHHHHHcC-CCEEEECCcCccCCHh-HHHHHHHCCC
Confidence 8888888887 4477777777766533 3455555544
No 78
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.55 E-value=2.6e-07 Score=103.21 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=91.7
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc---C--Cc-ccCHHHHh---ccCCEEEEcCCCCcccccc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV---G--VE-LVSFDQAL---ATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---g--~~-~~sl~ell---~~aDvV~l~~Plt~~t~~l 300 (628)
.|||||+|.||+.+|++|...|++|.+||+.... +...+. | +. ..+++++. +++|+|++++|-.+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 3899999999999999999999999999987532 222222 2 22 23677766 4699999999977777777
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
+ .+.+..+++|.+|||++....-+...+.+.+++..+.....=|.+.++
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 7 456778999999999999998998888899988777544444666554
No 79
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.53 E-value=1.1e-06 Score=90.77 Aligned_cols=102 Identities=22% Similarity=0.294 Sum_probs=75.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC----EEEEE-CCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAH-DPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~-~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
++|||||+|+||+++++.|...|+ +|++| |+... .+.+.+.|+... +..+++++||+|++|+| .+..+.++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 479999999999999999998887 89999 77642 233445677544 78888999999999997 44455555
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+....++++.++|++.-| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 3444567889999988655 366666665543
No 80
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.53 E-value=1.6e-07 Score=81.76 Aligned_cols=88 Identities=26% Similarity=0.406 Sum_probs=64.2
Q ss_pred eEEEEecChhHHHHHHHHHcCC---CEEE-EECCCCC--hhHHHHcCCccc--CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG---MNVI-AHDPYAP--ADKARAVGVELV--SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G---~~V~-~~d~~~~--~~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
||||||+|+||+.+++.|...| .+|. ++++... .+.+.+.++... +..+++++||+|++++| |+...-+-
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence 6999999999999999999999 9999 4487753 233455665433 69999999999999999 33222233
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 006864 303 DETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg 321 (628)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 567789999998644
No 81
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.53 E-value=8.7e-07 Score=96.38 Aligned_cols=93 Identities=26% Similarity=0.368 Sum_probs=73.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-HHcCCc-------ccCHHHHhccCCEEEEcCCCC-cc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-RAVGVE-------LVSFDQALATADFISLHMPLN-PT 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g~~-------~~sl~ell~~aDvV~l~~Plt-~~ 296 (628)
+.++++.|+|.|.+|+.+++.|+++|++|.++|+.... +.. ...+.. ..++.+.++++|+|+.+++.+ ..
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 56788999999999999999999999999999987422 122 223321 124678889999999998753 23
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
+..+++++.++.||++++|||++
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEe
Confidence 56689999999999999999987
No 82
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.52 E-value=2.2e-07 Score=98.34 Aligned_cols=82 Identities=26% Similarity=0.291 Sum_probs=67.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
.+++|||||+|.+|+.+|++|...|++|.+||+... .++++++++||+|++++|. +..+.+++. ...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~ 69 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQA 69 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHH
Confidence 357899999999999999999999999999998642 3678889999999999996 456666633 222
Q ss_pred -cCCCCcEEEEcCCCc
Q 006864 308 -KMKKGVRIVNVARGG 322 (628)
Q Consensus 308 -~mk~gailIN~aRg~ 322 (628)
.+++++++|++++|-
T Consensus 70 ~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 70 LNLPPETIIVTATKGL 85 (308)
T ss_pred hcCCCCcEEEEeCCcc
Confidence 478999999998743
No 83
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.51 E-value=4.4e-07 Score=100.13 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=75.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc---ccCHHHH---------------hccCCEEEEcC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE---LVSFDQA---------------LATADFISLHM 291 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~---~~sl~el---------------l~~aDvV~l~~ 291 (628)
++|+|||+|.||..+|..|...|++|++||+..........|.. ...++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999987533222222321 1134444 34799999999
Q ss_pred CCC------ccccccc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 292 PLN------PTTSKIF--NDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 292 Plt------~~t~~li--~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
|.. ++...+. -+.....+++|+++|+.+.-..--.+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 954 1222332 2445667899999999998777666666666654
No 84
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.49 E-value=3.4e-07 Score=94.32 Aligned_cols=103 Identities=31% Similarity=0.479 Sum_probs=85.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE--CCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~--d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
.-+.||.+.|-|||.+|+..|+.|++||.+|++. ||- ...++...|++.++++|+++++|+++.+. ..+.+|.
T Consensus 210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI-~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~ 284 (434)
T KOG1370|consen 210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPI-CALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIIT 284 (434)
T ss_pred heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCch-HHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhh
Confidence 3578999999999999999999999999999996 554 34566777999999999999999998854 4788999
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+.|.+||.++++-|++.- |.+-=...|+.
T Consensus 285 ~~H~~~mk~d~IvCN~Ghf---d~EiDv~~L~~ 314 (434)
T KOG1370|consen 285 GEHFDQMKNDAIVCNIGHF---DTEIDVKWLNT 314 (434)
T ss_pred HHHHHhCcCCcEEeccccc---cceeehhhccC
Confidence 9999999999999999753 33333344544
No 85
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.45 E-value=2.4e-07 Score=75.53 Aligned_cols=66 Identities=27% Similarity=0.493 Sum_probs=58.9
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCccccC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v~ 628 (628)
+++.+.|+||+++.+++.|+++++||.+|.... .++.|++.++++....++++++|+++++|.+|+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~~l~~li~~l~~~~~V~~v~ 67 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSEVSEELLEALRAIPGTIRVR 67 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEE
Confidence 567899999999999999999999999997643 348999999999998899999999999998763
No 86
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.45 E-value=8.3e-06 Score=91.59 Aligned_cols=177 Identities=20% Similarity=0.270 Sum_probs=113.4
Q ss_pred CCeEEE-EcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCC--h--------hhHHHHHHHHH
Q 006864 130 QCDALI-VRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIAN--T--------VAAAEHGIALL 198 (628)
Q Consensus 130 ~~d~li-v~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~--~--------~avAE~~l~l~ 198 (628)
++|+|+ ++ +.+.+.++...++--+|+...-.-|.=-++++.++||.+..--... + .++++.+
T Consensus 64 ~adiIlkV~---~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA---- 136 (511)
T TIGR00561 64 QSDIILKVN---APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA---- 136 (511)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH----
Confidence 578776 32 3445556666666667776655555555788899999887533211 1 1222222
Q ss_pred HHHHHchhHHHHHHHcCcccccc--cceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc
Q 006864 199 ASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV 275 (628)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~ 275 (628)
-.|-+..+.+.+ |++.... ..| .+.+.++.|+|.|.+|...++.++++|.+|+++|.+. ..+.++++|.+.+
T Consensus 137 --Gy~Avi~Aa~~l--gr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v 211 (511)
T TIGR00561 137 --GYRAIIEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFL 211 (511)
T ss_pred --HHHHHHHHHHHh--hhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence 222222222111 1111100 012 3457899999999999999999999999999999875 3455666676542
Q ss_pred --C--------------------------HHHHhccCCEEEEcC--CCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 276 --S--------------------------FDQALATADFISLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 276 --s--------------------------l~ell~~aDvV~l~~--Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+ +.+.++++|+|+.++ |..+ .-.++.++.++.||+|+++||++
T Consensus 212 ~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 212 ELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred eccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 1 445678899998877 3222 23578999999999999999997
No 87
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.44 E-value=2.8e-06 Score=90.61 Aligned_cols=113 Identities=24% Similarity=0.315 Sum_probs=83.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-----------HcC---------Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-----------AVG---------VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g---------~~~-~sl~ell~~aDvV 287 (628)
++|||||.|.||..+|..+...|++|.+||+.... +.+. +.+ +.. .+++++++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999987521 1110 111 122 3788999999999
Q ss_pred EEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeecc
Q 006864 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVF 346 (628)
Q Consensus 288 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~ 346 (628)
+-++|-+.+.+..+-++.-+.++++++|- ++..+ +.-.++.+.++. .++ .++..|
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIla-SnTS~-l~~s~la~~~~~p~R~--~g~Hff 143 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIA-SSTSG-LLPTDFYARATHPERC--VVGHPF 143 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEE-ECCCc-cCHHHHHHhcCCcccE--EEEecC
Confidence 99999999988888788888899998554 44333 455666777754 456 444444
No 88
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.43 E-value=1.6e-06 Score=96.00 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=89.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCC-----------------cccCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV-----------------ELVSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~-----------------~~~sl~ell~~aDvV~l~~P 292 (628)
++|||||+|.||..+|..+.. |++|++||.....-.....|. ...+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 799999998753322222332 12333457899999999999
Q ss_pred CCc------ccccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH-HhC--CCeeE-EEeeccCCCCCCCC---Ccc
Q 006864 293 LNP------TTSKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRA-LDS--GVVAQ-AALDVFTEEPPAKD---SKL 357 (628)
Q Consensus 293 lt~------~t~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~a-L~~--g~i~g-a~lDV~~~EP~~~~---~~L 357 (628)
... +...++. +.....+++|.++|+.+.-.+-..+.+++. +++ |.-.+ ...=+|.+||.... ..+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 652 2344442 345678999999999999888777655443 333 32111 11114667887543 355
Q ss_pred ccCCcEEE
Q 006864 358 VQHENVTV 365 (628)
Q Consensus 358 ~~~~nvil 365 (628)
...|.++.
T Consensus 166 ~~~~riv~ 173 (425)
T PRK15182 166 TNIKKITS 173 (425)
T ss_pred cCCCeEEE
Confidence 66677754
No 89
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.42 E-value=2.7e-06 Score=89.29 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=85.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----------cC-------------Cccc-CHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----------VG-------------VELV-SFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-------------~~~~-sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|.+||+.... +.+.+ .| +... +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999987422 11110 12 1222 454 5789
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
||+|+.++|-..+.+..+-.+....++++++|+ |++.-.+ ..+.+.+.. .++ .++..+. |.+ -.++
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~--~g~h~~~--p~~-~~~~---- 151 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERF--IGIHFMN--PVP-VMKL---- 151 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccE--EEeeccC--Ccc-cCce----
Confidence 999999999776655544456667789999998 6654433 356776643 344 4445554 332 1233
Q ss_pred cEEEcCCCCCC
Q 006864 362 NVTVTPHLGAS 372 (628)
Q Consensus 362 nvilTPHig~~ 372 (628)
+-+.+|.+++
T Consensus 152 -vei~~g~~t~ 161 (292)
T PRK07530 152 -VELIRGIATD 161 (292)
T ss_pred -EEEeCCCCCC
Confidence 4467776554
No 90
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.40 E-value=6.5e-07 Score=94.08 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=67.9
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||+++|||.| .+|+.+|.+|...|+.|..|++... ++.++.++||+|+++++.. +++
T Consensus 153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v 216 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLI 216 (301)
T ss_pred hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hcc
Confidence 4679999999999996 9999999999999999999986532 6888999999999999844 345
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006864 302 NDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg 321 (628)
.... +|+|+++||++--
T Consensus 217 ~~~~---ik~GaiVIDvgin 233 (301)
T PRK14194 217 DADW---LKPGAVVIDVGIN 233 (301)
T ss_pred cHhh---ccCCcEEEEeccc
Confidence 4443 7999999999843
No 91
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.37 E-value=4.1e-06 Score=88.01 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=104.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcCC-------------cc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVGV-------------EL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~sl~ell~~ 283 (628)
++|||||.|.||..+|..+...|++|+.||+.... +. ..+.|. .. .++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999987532 11 122221 12 256 55899
Q ss_pred CCEEEEcCCCCccccccccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~m-k~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
||+|+-++|-+.+.+.-+-...-+.+ +++++|++.+.+-.+..- ..+++. .++ .++..|.+-| -.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l--a~~~~~~~r~--~g~hf~~P~~---~~~----- 152 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL--AAATKRPGRV--LGLHFFNPVP---VLP----- 152 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH--HhhcCCCccE--EEEecCCCcc---cCc-----
Confidence 99999999988888777655444445 899999988766544443 344432 344 4555555322 123
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc---CCCCCCcccCCCCCcccccccccHHHH
Q 006864 362 NVTVTPHLGASTKEAQEGVAIEIAEAVVGALR---GELSATAINAPMVPSEVLSELAPYVVL 420 (628)
Q Consensus 362 nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~---g~~~~~~vn~p~~~~~~~~~~~p~~~l 420 (628)
-+=++||.+++ .++.+.+..++. |+.+..+-..|.+....+ +.|++.-
T Consensus 153 lvElv~~~~T~---------~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi--~~~~~~E 203 (286)
T PRK07819 153 LVELVPTLVTS---------EATVARAEEFASDVLGKQVVRAQDRSGFVVNAL--LVPYLLS 203 (286)
T ss_pred eEEEeCCCCCC---------HHHHHHHHHHHHHhCCCCceEecCCCChHHHHH--HHHHHHH
Confidence 34667776666 445566666643 444433323354444333 3344443
No 92
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.35 E-value=2.8e-06 Score=80.13 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=77.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh--hHHHHcCC-----cccCHHHHhccCCEEEEcCCCCcc-
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGV-----ELVSFDQALATADFISLHMPLNPT- 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~-----~~~sl~ell~~aDvV~l~~Plt~~- 296 (628)
++.+++++|+|+|.||+.+++.+...| .+|.++|+.... ..+...+. ...+++++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 466899999999999999999999886 789999987532 22333332 334778889999999999997653
Q ss_pred ccc-cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC
Q 006864 297 TSK-IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (628)
Q Consensus 297 t~~-li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~ 337 (628)
... .+... .++++.+++|++..+... .+.+.+++..
T Consensus 96 ~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g 132 (155)
T cd01065 96 GDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALG 132 (155)
T ss_pred CCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCC
Confidence 122 23332 368999999998765443 6666666643
No 93
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.35 E-value=2.6e-06 Score=88.97 Aligned_cols=104 Identities=11% Similarity=0.169 Sum_probs=74.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCCh--hH-HHHcCCccc-CHHHHhccCCEEEEcCCCCccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA--DK-ARAVGVELV-SFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~-a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+++|||||+|+||+++|+.|...| .+|++||+.... +. ....|+... +..+++++||+|++++| .++...
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHH
Confidence 3578999999999999999998777 789999986421 22 233466543 78888999999999999 333444
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+ .+....++++.+||++.-| +..+.+.+.+..
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 44 3444557889999998644 356666666543
No 94
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.31 E-value=4.4e-06 Score=88.56 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=81.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcCC-------------cc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVGV-------------EL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~sl~ell~~ 283 (628)
++|+|||+|.||..+|..|...|++|.+||+.... +. ..+.|. .. .++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 47999999999999999999999999999987421 11 112332 22 378889999
Q ss_pred CCEEEEcCCCCccccccccHHHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCc
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAK-MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN 362 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~-mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~n 362 (628)
||+|+.++|-..+.+..+-.+ ++. +++.+++..... ......+.+.+..... ...| .|.. |-+-.+=
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~~--~~~~----hp~~---p~~~~~l 150 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTS--ALLASAFTEHLAGRER--CLVA----HPIN---PPYLIPV 150 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCC--CCCHHHHHHhcCCccc--EEEE----ecCC---CcccCce
Confidence 999999999665444333222 333 455555543333 3345567777754321 2222 2221 1111234
Q ss_pred EEEcCCCCCC
Q 006864 363 VTVTPHLGAS 372 (628)
Q Consensus 363 vilTPHig~~ 372 (628)
+.++||-++.
T Consensus 151 veiv~~~~t~ 160 (308)
T PRK06129 151 VEVVPAPWTA 160 (308)
T ss_pred EEEeCCCCCC
Confidence 6799987766
No 95
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.31 E-value=6.5e-06 Score=85.99 Aligned_cols=130 Identities=20% Similarity=0.183 Sum_probs=85.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh------------HHHHcC-------------Cccc-CHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD------------KARAVG-------------VELV-SFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------------~a~~~g-------------~~~~-sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|++||+..... ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999764221 111222 1212 454 4799
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCc
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHEN 362 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~n 362 (628)
||+|++++|-..+.+.-+-++..+.++++++|+....| +....|.+.+... ++.|+ . ...|.+ -.++
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~~r~ig~--h--~~~P~~-~~~~----- 150 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRPDKVIGM--H--FFNPVP-VMKL----- 150 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCCcceEEe--e--ccCCcc-cCcc-----
Confidence 99999999977666654445566678999998544444 4555777777433 45333 3 333322 2233
Q ss_pred EEEcCCCCCC
Q 006864 363 VTVTPHLGAS 372 (628)
Q Consensus 363 vilTPHig~~ 372 (628)
+-++|+-+..
T Consensus 151 vev~~g~~t~ 160 (282)
T PRK05808 151 VEIIRGLATS 160 (282)
T ss_pred EEEeCCCCCC
Confidence 3477775544
No 96
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.30 E-value=1.6e-06 Score=90.45 Aligned_cols=102 Identities=18% Similarity=0.317 Sum_probs=75.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC----EEEEECCCCCh-hHHH-HcCCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAHDPYAPA-DKAR-AVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a~-~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
++|||||+|+||+++++.|...|+ +|++||+.... +... +.|+... +..+++++||+|++|+| ......++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 589999999999999999987664 79999987532 2233 3676544 67889999999999999 34455555
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+.-..++++.++|++.-| ++.+.|.+.+..
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~~ 111 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFDR 111 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcCC
Confidence 3343456888999999865 566667776643
No 97
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.28 E-value=2e-06 Score=89.78 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=69.5
Q ss_pred ceeeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|.+ |+.+|..|...|+.|..++... -++.+.+++||+|+.++| +.+++
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i 215 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVL 215 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCcc
Confidence 467899999999999999 9999999999999999876431 257889999999999999 45788
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
+. +++|+|+++||++--.
T Consensus 216 ~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 216 TA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred CH---HHcCCCCEEEEccccc
Confidence 87 5679999999998543
No 98
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.28 E-value=2.7e-06 Score=88.74 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=77.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHc--CCCEEE-EECCCCCh--hHHHHcCC-c-ccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG--LGMNVI-AHDPYAPA--DKARAVGV-E-LVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~~--~~a~~~g~-~-~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
...+|||||+|+||+.+++.+.. .++++. +||+.... +.+...+. . +.++++++.++|+|++|+|... ..-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHH
Confidence 34789999999999999999985 478876 57876422 22334453 2 3589999999999999999432 222
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+. ...++.|.-++..+.|.+.+.++|.++.+++..
T Consensus 83 ~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271)
T PRK13302 83 IV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271)
T ss_pred HH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence 22 333566777777788888888999998877543
No 99
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=2.5e-06 Score=68.95 Aligned_cols=68 Identities=29% Similarity=0.603 Sum_probs=59.5
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
+|.+.+.|+||+++.++..|+++++||.+|.......++.+.+.+.++....++++++|+++++|.+|
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~v~~v 68 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQV 68 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCCceEE
Confidence 46678899999999999999999999999988653346788888999988788999999999999876
No 100
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.26 E-value=9.4e-06 Score=91.83 Aligned_cols=129 Identities=24% Similarity=0.268 Sum_probs=90.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcC-------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVG-------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------~~~-~sl~ell~~ 283 (628)
++|||||.|.||+.+|..+...|++|..||+.... +. ..+.| +.. .++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 68999999999999999999999999999987522 22 12233 222 26655 569
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gail-IN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~ 361 (628)
||+|+-++|-..+.+..+-.+.-..++++++| +|++.-.+ ..+..+++. .++ .++..|.+-|. .+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~v---~~----- 153 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVPL---MK----- 153 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCccc---Ce-----
Confidence 99999999988888877655555557899999 59887665 356666653 355 55666664433 23
Q ss_pred cEEEcCCCCCC
Q 006864 362 NVTVTPHLGAS 372 (628)
Q Consensus 362 nvilTPHig~~ 372 (628)
=+.+.+|-.++
T Consensus 154 LvEvv~g~~Ts 164 (507)
T PRK08268 154 LVEVVSGLATD 164 (507)
T ss_pred eEEEeCCCCCC
Confidence 35566665554
No 101
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.26 E-value=1.3e-05 Score=84.10 Aligned_cols=113 Identities=22% Similarity=0.271 Sum_probs=77.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH--------------cCC-------------ccc-CHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA--------------VGV-------------ELV-SFDQA 280 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--------------~g~-------------~~~-sl~el 280 (628)
++|+|||.|.||..+|..+...|++|++||+.... +.+.+ .+. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 68999999999999999999999999999987522 11100 011 112 34 56
Q ss_pred hccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 281 l~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
+++||+|+.++|-..+.+.-+-++.-..++++++|+.+..| +....+.+.+.. .++ .++..|.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~--ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERKDRF--IGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcccE--EEEecCC
Confidence 79999999999966554444434444567899999887766 355666677653 345 4444444
No 102
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.25 E-value=2.6e-06 Score=68.64 Aligned_cols=68 Identities=37% Similarity=0.603 Sum_probs=60.6
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCccccC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARIL 628 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v~ 628 (628)
|.+...|+||+++.|+.+|+++++||..+.+.+...++.+.+.+.++.....+++++|+++++|.+|+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVR 69 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEE
Confidence 56788999999999999999999999999997765458899999998887789999999999998763
No 103
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.24 E-value=1.1e-05 Score=88.80 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=71.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHH--------------------cC-Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA--------------------VG-VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-~~~-~sl~ell~~aDvV 287 (628)
++|||||+|.+|..+|..|...|++|++||+....-.... .| +.. .++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3799999999999999999999999999998643211111 13 222 2678889999999
Q ss_pred EEcCCCCccc------ccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006864 288 SLHMPLNPTT------SKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVR 331 (628)
Q Consensus 288 ~l~~Plt~~t------~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~ 331 (628)
++|+|..... ..+.. ......+++|.++|+++.-.+=..+.+.+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~ 132 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK 132 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence 9999954321 11221 34456689999999998654444455543
No 104
>TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein.
Probab=98.24 E-value=4.7e-06 Score=91.46 Aligned_cols=135 Identities=10% Similarity=0.046 Sum_probs=88.9
Q ss_pred CceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccc------------hHhHHhhcCceEEEEEeec--CCC
Q 006864 437 GIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN------------ADFTAKQKGLRISEERVVA--DSS 502 (628)
Q Consensus 437 ~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvN------------A~~iAke~GI~i~~~~~~~--~~~ 502 (628)
.++++++.++|||+ .|.++|++|+|++.||+ ++.+++++... .+.++.+++|.+.+.+... ...
T Consensus 41 ~~~rv~v~LyGSLA-~TGkGHgTD~Avl~GL~-G~~P~~vd~~~~~~~~~~~~~~~~l~l~~~~~i~f~~~~di~f~~~~ 118 (455)
T TIGR00720 41 QVTRVQVDLYGSLA-LTGKGHLTDIAILMGLA-GIYPNTVDIDTKKGFLHEVLENKVLKLAGQHHVPFDYANDLIFHNKP 118 (455)
T ss_pred CCcEEEEEEEchhh-hcCCCccccHHHHHHhc-CCCCCCcChhhhHHHHHHHHhcCeeecCCCCccccCcccceeeCCCC
Confidence 58999999999999 99999999999999999 55666676663 3345667888877653221 011
Q ss_pred CCCCCceEEEEEEecccccceeeCCCcE-EEEEEEEEC-CeeEEEEECceeEEeecCCcEEEEeccCCC---CchhhHHh
Q 006864 503 PEFPIDSIQVQLSNVDSKFAAAVSENGE-ISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQP---GMIGKVGN 577 (628)
Q Consensus 503 ~~~~~ntv~v~l~~~~~~~~~~~~~~~~-~~v~Gt~~g-G~~~I~~Idgf~Vd~~~~~~~Llv~~~D~P---GvIa~V~~ 577 (628)
...|||+++++..+ .++.. .+.++.|+| |.++.-+ .+.-+- .. ..+.| --...+..
T Consensus 119 lp~HPNgm~f~a~d---------~~g~~l~~~t~ySIGGGfI~~~~--~~~~~~-~~-------~~~~p~~f~s~~ell~ 179 (455)
T TIGR00720 119 LPLHENGMTITAFN---------SKNEVLYEETYYSVGGGFIVTEK--HFGSEE-DN-------NVSVAYPFKSAKELLE 179 (455)
T ss_pred CCCCCCeeEEEEEe---------CCCCEEEEEEEEEcCCceeeecc--cccccc-cc-------CCCCCcCCCCHHHHHH
Confidence 23699999999983 34443 478899998 6665331 111110 00 11222 23445667
Q ss_pred hhhcCCccccceEEe
Q 006864 578 ILGEHNVNVNFMSVG 592 (628)
Q Consensus 578 iL~~~~INIa~m~v~ 592 (628)
+-.+++++|..+-+.
T Consensus 180 ~~~~~~~~i~e~v~~ 194 (455)
T TIGR00720 180 LCQKHGKSISEIALL 194 (455)
T ss_pred HHHHhCCCHHHHHHH
Confidence 777888888877553
No 105
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.23 E-value=3.9e-05 Score=86.44 Aligned_cols=185 Identities=21% Similarity=0.246 Sum_probs=113.0
Q ss_pred CCeEEE-EcCCCCCCHHHHHhcCCcceeEEecccccCcccHhHHHhcCceEEcCCCCCh--hhHHHHHHHHHH--HHHHc
Q 006864 130 QCDALI-VRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANT--VAAAEHGIALLA--SMARN 204 (628)
Q Consensus 130 ~~d~li-v~~~~~v~~~~l~~~~~~Lk~I~~~g~G~D~iDl~aa~~~GI~V~n~p~~~~--~avAE~~l~l~L--~~~R~ 204 (628)
++|+|+ ++ +.+.+.++..+++--+|+...-..|.=-++++.++||.+..--.... .+-.=.++.-|- +-.|-
T Consensus 65 ~~diilkV~---~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~A 141 (509)
T PRK09424 65 QSDIILKVN---APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRA 141 (509)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHH
Confidence 578877 32 34455566665566777776666665567888999998875322110 000001111111 11222
Q ss_pred hhHHHHHHHcCccccccc-ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc--CH---
Q 006864 205 VSQADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--SF--- 277 (628)
Q Consensus 205 i~~~~~~~~~g~W~~~~~-~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~--sl--- 277 (628)
+..+.+.. |+...... ......|.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+ +.
T Consensus 142 v~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~ 219 (509)
T PRK09424 142 VIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEE 219 (509)
T ss_pred HHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccc
Confidence 22221111 11111000 0013468999999999999999999999999999999886 4466777887632 11
Q ss_pred -----------------------HHHhccCCEEEEcCCCCcc-ccccccHHHHhcCCCCcEEEEcC
Q 006864 278 -----------------------DQALATADFISLHMPLNPT-TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 278 -----------------------~ell~~aDvV~l~~Plt~~-t~~li~~~~l~~mk~gailIN~a 319 (628)
.+.+..+|+|+.+.-.... .-.++.++.++.||+|.++++++
T Consensus 220 ~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 220 GGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred cccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 1112569999998864221 23455788999999999999997
No 106
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.21 E-value=1.4e-06 Score=69.91 Aligned_cols=65 Identities=25% Similarity=0.325 Sum_probs=55.9
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeec-CccEEEEEEeCCCCCHHHHHHHhcccC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEPNQDSLKEIGKVHF 623 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~-gg~Al~~i~vD~~~~~~~l~~L~~l~~ 623 (628)
|.+.+..+|+||++++|+++|+++||||..+...+... ....++.+..|....+.++++|+++++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 45677889999999999999999999999999988665 456677777888888899999998764
No 107
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.21 E-value=1.3e-05 Score=90.64 Aligned_cols=104 Identities=23% Similarity=0.263 Sum_probs=73.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHH-------------------HcC-Cccc-CHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KAR-------------------AVG-VELV-SFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~-------------------~~g-~~~~-sl~ell~~aDvV 287 (628)
++|||||.|.||..+|.++...|++|.+||+..... ... ..+ +..+ ++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 589999999999999999999999999999875321 110 112 3333 788999999999
Q ss_pred EEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 288 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
+.++|-..+.+..+-.+.-+.++++++| .++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999977665654434444557888755 4444443 34466776654
No 108
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.21 E-value=1.7e-05 Score=84.01 Aligned_cols=110 Identities=19% Similarity=0.278 Sum_probs=72.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-----cC--------------Ccc-cCHHHHhccCCEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-----VG--------------VEL-VSFDQALATADFIS 288 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~g--------------~~~-~sl~ell~~aDvV~ 288 (628)
++|+|||.|.||..+|..|...|++|++||+.... +...+ .+ +.. .++++++++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 68999999999999999999999999999986522 11111 11 122 26778899999999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEE
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQA 341 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga 341 (628)
+++|-..+.+.-+-.+.-..++++++|+....| +....+.+.+.. .++.|+
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEE
Confidence 999965433322223332346777776544333 235577777653 355444
No 109
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.18 E-value=4.4e-06 Score=87.94 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=66.5
Q ss_pred ceeeecCCeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||+++||| .|.+|+.+|.+|...|+.|.+|+.... ++++++++||+|+++++-.. ++
T Consensus 152 ~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hc
Confidence 35689999999999 999999999999999999999963321 47889999999999998543 44
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
.... +|+|+++||++--.
T Consensus 216 ~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINR 233 (296)
T ss_pred chhe---ecCCCEEEEcCCcc
Confidence 4332 89999999998433
No 110
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.17 E-value=8.6e-06 Score=86.93 Aligned_cols=101 Identities=28% Similarity=0.328 Sum_probs=74.7
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc--------C------Ccc-cCHHHHhccCCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV--------G------VEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--------g------~~~-~sl~ell~~aDvV~l~~P 292 (628)
.++|+|||+|.||..+|.+|...|++|.+|+++... +..... | +.. .+++++++.||+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 358999999999999999999999999999996422 222222 2 222 278888999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCC-chhc--HHHHHHHHhC
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARG-GVID--EEALVRALDS 335 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg-~~vd--e~aL~~aL~~ 335 (628)
... + ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 552 2 5666889999999999987 3222 4455566544
No 111
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.13 E-value=9.8e-06 Score=78.66 Aligned_cols=90 Identities=18% Similarity=0.288 Sum_probs=73.5
Q ss_pred eeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 225 VSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 225 ~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++.||++.|||.|.+ |..+|+.|+..|.+|...+++. -++.+.+.+||+|+.+++-. +++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 4689999999999996 8889999999999999988762 24678899999999999833 36777
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
+. ++++.++||+|...-+| ..+|++.|
T Consensus 104 ~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 74 58899999999888777 44556643
No 112
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=7.1e-06 Score=85.70 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=66.4
Q ss_pred ceeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||+++|||. |.+|+.+|.+|...|+.|..|.... .++.+.+++||+|+.+++.. +++
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v 215 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFV 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccC
Confidence 477899999999999 9999999999999999999985332 15888999999999999844 345
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
.... +|+|+++||++-
T Consensus 216 ~~~~---ik~GavVIDvgi 231 (284)
T PRK14179 216 TKEF---VKEGAVVIDVGM 231 (284)
T ss_pred CHHH---ccCCcEEEEecc
Confidence 5543 799999999983
No 113
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.09 E-value=7.3e-06 Score=86.79 Aligned_cols=92 Identities=22% Similarity=0.254 Sum_probs=68.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHc--------------CCcc-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------------GVEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------------g~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
++|+|||+|.||..+|.+|...|++|.+||+... .+..... ++.. .+++++++.||+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 4799999999999999999999999999998642 2222222 2222 3678889999999999995
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
..+..++ .+....++++.++|++..|--
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeeccc
Confidence 3455554 344556788999999976543
No 114
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.08 E-value=4.2e-05 Score=86.44 Aligned_cols=117 Identities=23% Similarity=0.231 Sum_probs=81.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH-----------HHHcCC-------------cc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVGV-------------EL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~sl~ell~~ 283 (628)
++|||||.|.||..||..+...|++|.+||+.... ++ ..+.|. .. .++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 67999999999999999999999999999987422 11 112231 12 25655 579
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~ 351 (628)
||+|+.++|-..+.+..+-.+.-..++++++|. |++.-.+ ..+.+.++.. ....++..|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~p-~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLARP-ERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCcc-cceEEEeccCcccc
Confidence 999999999888877766555556688888876 6664443 4566666532 22366676765543
No 115
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.02 E-value=1.3e-05 Score=82.75 Aligned_cols=100 Identities=12% Similarity=0.244 Sum_probs=71.5
Q ss_pred eEEEEecChhHHHHHHHHHcCCC---EEEEECCCCCh-hHH-HHc-CCcc-cCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM---NVIAHDPYAPA-DKA-RAV-GVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~~~-~~a-~~~-g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
+|||||+|+||+.+++.|...|. .+.+||+.... +.. ... ++.. .+.++++++||+|++++| .+....++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 79999999999999999987774 35788876422 222 223 3544 378889999999999999 3334444432
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+ .++++.++|.+. .-+..+.|.+.++.+
T Consensus 81 --l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 81 --L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred --h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 3 357889999987 447777888877654
No 116
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.02 E-value=6.7e-05 Score=77.53 Aligned_cols=104 Identities=20% Similarity=0.293 Sum_probs=69.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCC---CEEEEECCCCC-hhHHHH-cCCccc-CHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG---MNVIAHDPYAP-ADKARA-VGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~-~~~a~~-~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|+|||+|.||+.+++.+...| .+|.+||++.. .+...+ .|+... +.++++.+||+|++++|-. ..+.++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence 57999999999999999998888 78999998752 222233 365443 6788899999999999832 23333322
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-Cee
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVA 339 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ 339 (628)
....+ +..||.+.-|- ..+.+.+.+..+ ++.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~~~~~iv 113 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLGADLPVV 113 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcCCCCcEE
Confidence 22223 45777776543 566677666533 443
No 117
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.00 E-value=3.3e-05 Score=84.60 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=84.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH-HHH----------------cCCcc-c--CHHHHhccCCEEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARA----------------VGVEL-V--SFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~----------------~g~~~-~--sl~ell~~aDvV~l 289 (628)
++|+|||+|.||..+|..+. .|++|++||+....-. ..+ .+... . +..++.++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 36999999999999997766 4999999998643211 111 11122 1 36678899999999
Q ss_pred cCCCCcccc-cccc------H-HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCC---Cccc
Q 006864 290 HMPLNPTTS-KIFN------D-ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD---SKLV 358 (628)
Q Consensus 290 ~~Plt~~t~-~li~------~-~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~~L~ 358 (628)
|+|...+-+ ..++ . +.+..+++|.++|+.+.-.+=-.+.+.+.+.+..+ +|.+|.+... +.++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCccccccc
Confidence 999552211 1121 1 22334799999999998887777788877765333 2466665433 2345
Q ss_pred cCCcEEE
Q 006864 359 QHENVTV 365 (628)
Q Consensus 359 ~~~nvil 365 (628)
..|.+++
T Consensus 154 ~p~rvv~ 160 (388)
T PRK15057 154 HPSRIVI 160 (388)
T ss_pred CCCEEEE
Confidence 5566654
No 118
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=1.8e-05 Score=82.93 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=68.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++++. .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i 215 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLV 215 (286)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----Cccc
Confidence 46689999999999999 99999999999999999987642 2578899999999999984 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006864 302 NDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg 321 (628)
..+. +|+|+++||+|-.
T Consensus 216 ~~~~---vk~gavVIDvGi~ 232 (286)
T PRK14175 216 TKDV---VKEGAVIIDVGNT 232 (286)
T ss_pred CHHH---cCCCcEEEEcCCC
Confidence 7753 6999999999854
No 119
>PRK07680 late competence protein ComER; Validated
Probab=97.97 E-value=2.8e-05 Score=80.96 Aligned_cols=100 Identities=11% Similarity=0.227 Sum_probs=72.0
Q ss_pred eEEEEecChhHHHHHHHHHcCC----CEEEEECCCCCh-hHH-HHc-CCccc-CHHHHhccCCEEEEcCCCCcccccccc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA-DKA-RAV-GVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~-~~a-~~~-g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
+|||||+|.||+.+++.|...| .+|.+||++... +.. ... ++... +..+++.+||+|++++| .......+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 6999999999999999998777 379999987522 222 222 55443 78888999999999998 33344444
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 303 ~~~l~~mk~gailIN~aRg~~vde~aL~~aL~ 334 (628)
++....++++.++|+++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3344467788999999844 36777776665
No 120
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.97 E-value=1.1e-05 Score=74.87 Aligned_cols=106 Identities=21% Similarity=0.435 Sum_probs=60.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEE-CCCC-ChhHHHH-cC-CcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DPYA-PADKARA-VG-VELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~-~~~~a~~-~g-~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
..+|||||.|++|..+++.|+..|+.|.++ ++.. ..+++.. .+ ....++++++++||++++++|-. .... +-++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~-va~~ 87 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAE-VAEQ 87 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHH-HHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHH-HHHH
Confidence 468999999999999999999999999876 4443 2222221 22 23457889999999999999943 2222 2233
Q ss_pred HHhc--CCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 305 TFAK--MKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 305 ~l~~--mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.-.. .++|.+++-|+ +-...+.|..+-+.|-+
T Consensus 88 La~~~~~~~g~iVvHtS--Ga~~~~vL~p~~~~Ga~ 121 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTS--GALGSDVLAPARERGAI 121 (127)
T ss_dssp HHCC--S-TT-EEEES---SS--GGGGHHHHHTT-E
T ss_pred HHHhccCCCCcEEEECC--CCChHHhhhhHHHCCCe
Confidence 3322 68999999996 23344444444455543
No 121
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.96 E-value=1.4e-05 Score=64.62 Aligned_cols=69 Identities=16% Similarity=0.329 Sum_probs=57.9
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
|+|.+...|+||+++.++.+|+++++||..+...+...++.+.+.+.++.. .-++++++|+++++|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 578889999999999999999999999999998754356778888888753 234788999999998876
No 122
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=5.2e-05 Score=76.41 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=90.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHH---hccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQA---LATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-sl~el---l~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
++||.||||+||..+++||..-|.+|++||... ..+.+...|++.+ +|+++ |..-.+|-+.+|-.+-|...+ ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 479999999999999999999999999999886 3345566666543 66665 456789999999776565555 45
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~ 347 (628)
.-..|.+|-++|+-+...--|.-..++.|++..| ..+||=.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccC
Confidence 5566899999999888877788778888988888 5678644
No 123
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=97.96 E-value=5.3e-05 Score=79.94 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCCEEEEECCCCCh------hHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCc
Q 006864 241 GSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (628)
Q Consensus 241 G~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga 313 (628)
|+.+|++|...|++|++||++... +...+.|+..+ +..+++++||+|++++|..+.++.++ ...++.+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999976431 23556687665 68999999999999999877787777 56888999999
Q ss_pred EEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCC
Q 006864 314 RIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEP 350 (628)
Q Consensus 314 ilIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP 350 (628)
++||++. ++.+.+++.|+.. +...--+-|..-.|
T Consensus 111 IVID~ST---IsP~t~~~~~e~~l~~~r~d~~v~s~HP 145 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEKILRLKRTDVGISSMHP 145 (341)
T ss_pred EEEECCC---CCHHHHHHHHHHHhhcCccccCeeccCC
Confidence 9999975 5556666666551 11112233455565
No 124
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.94 E-value=3.7e-05 Score=82.29 Aligned_cols=107 Identities=25% Similarity=0.334 Sum_probs=75.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-----------------c-CHHHHhccCCEEEEcC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-----------------V-SFDQALATADFISLHM 291 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-----------------~-sl~ell~~aDvV~l~~ 291 (628)
++|+|||.|.||..+|.+|...|.+|.+||+....+...+.|... . +. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 579999999999999999999999999999853223333334321 1 33 5678999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 292 Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
|.. +....+ +.....++++.+++.+.- ++-..+.+.+.+...++..
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~~ 127 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVLA 127 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEEE
Confidence 854 344443 345556788999998864 4555667777776655543
No 125
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.93 E-value=2.7e-05 Score=77.50 Aligned_cols=88 Identities=26% Similarity=0.372 Sum_probs=65.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH---HHHcC--CcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK---ARAVG--VELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---a~~~g--~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
++++|+|.|+||..+|++|...|++|++-.+..+... ++.++ ++..+.++..+.||+|++++|...- .. +.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~-v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PD-VLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-Hh-HHHH
Confidence 6899999999999999999999999998866543321 22233 3345889999999999999996542 11 2345
Q ss_pred HHhcCCCCcEEEEcCC
Q 006864 305 TFAKMKKGVRIVNVAR 320 (628)
Q Consensus 305 ~l~~mk~gailIN~aR 320 (628)
..+.+. |.++|++.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 555555 889999865
No 126
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.93 E-value=4.7e-05 Score=79.63 Aligned_cols=105 Identities=13% Similarity=0.221 Sum_probs=72.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCCh--hHH-HHc-CCcc-cCHHHHhccCCEEEEcCCCCcccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA--DKA-RAV-GVEL-VSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a-~~~-g~~~-~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
.+|+|||+|.||+.+++.|...| .+|++|+++... ... ... ++.. .+..++++++|+|++++|- ......
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 47999999999999999998777 689999876422 111 122 2332 4778889999999999992 223333
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+ .+....++++..||.+.-| +..+.|.+.+...++
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 3 2333446788899998766 666677777643344
No 127
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.92 E-value=5.2e-05 Score=76.44 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=61.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChh-H-HHH-------cCC----cccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPAD-K-ARA-------VGV----ELVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~-a~~-------~g~----~~~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+||| .|.||+.+|++|...|.+|.++++..... . ... .|+ ...+..+.++++|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 99999999999999999999998864221 1 111 121 12367788999999999999442
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCch
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~ 323 (628)
...++ ++.-..++ +.++|++.-|--
T Consensus 81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~ 105 (219)
T TIGR01915 81 -VLKTL-ESLRDELS-GKLVISPVVPLA 105 (219)
T ss_pred -HHHHH-HHHHHhcc-CCEEEEeccCce
Confidence 33333 22212243 589999976643
No 128
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.90 E-value=5.3e-05 Score=79.60 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=99.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhc-cCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALA-TADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~-~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
+.|||||+|++|+-+|+.+-..|+.|+.+||..-.+.++.+|... ..+.++++ +.|+|.+|+... .+..++----++
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilatypfq 131 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATYPFQ 131 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhcCch
Confidence 689999999999999999999999999999987566677778654 46777776 699999998632 233444334466
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006864 308 KMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (628)
Q Consensus 308 ~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig 370 (628)
++|.|++++++-+-+...-+++.+.|.+. .|. ..=-.|+++ ..++.+-.+|-|+.--.+|
T Consensus 132 rlrrgtlfvdvlSvKefek~lfekYLPkdfDIl-ctHpmfGPk--svnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 132 RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDIL-CTHPMFGPK--SVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhccceeEeeeeecchhHHHHHHHhCccccceE-eecCCcCCC--cCCCccccCceEEEEeecc
Confidence 78999999999999999999999988664 331 111123322 2345555677666655555
No 129
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.89 E-value=5.7e-05 Score=64.88 Aligned_cols=67 Identities=31% Similarity=0.482 Sum_probs=57.0
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
..+.+++++|+|.|.+|+.+++.+... +.+|.+||+ |+++.+.+. .+.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCC----CCCchH
Confidence 457889999999999999999999988 678999987 999999874 345556
Q ss_pred HHHhcCCCCcEEEEcC
Q 006864 304 ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~mk~gailIN~a 319 (628)
+....+++++++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5688899999999975
No 130
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.89 E-value=2.6e-05 Score=81.08 Aligned_cols=88 Identities=25% Similarity=0.437 Sum_probs=69.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC-C-ChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-A-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~-~-~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
-|.||||+|||||.-|.+=|..|+.-|.+|++--+. . +-+.+.+.|++..+.+|+.++||+|.+.+|-..+ ..++.+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q-~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQ-KEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhH-HHHHHH
Confidence 589999999999999999999999999998764332 2 4577888999999999999999999999994332 334444
Q ss_pred HHHhcCCCCcE
Q 006864 304 ETFAKMKKGVR 314 (628)
Q Consensus 304 ~~l~~mk~gai 314 (628)
+.-..||+|+.
T Consensus 94 ~I~p~Lk~G~a 104 (338)
T COG0059 94 EIAPNLKEGAA 104 (338)
T ss_pred HhhhhhcCCce
Confidence 55555666653
No 131
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.85 E-value=1.3e-05 Score=74.77 Aligned_cols=94 Identities=23% Similarity=0.328 Sum_probs=68.9
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCCCh--hHHHHc---CCcc---cCHHHHhccCCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYAPA--DKARAV---GVEL---VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~--~~a~~~---g~~~---~sl~ell~~aDvV~l~~Plt~~ 296 (628)
+++|+++.|||.|.+|+.++..|...|++ |..++|.... ..+... .+.. .++.+.+.++|+|+.++|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 68999999999999999999999999986 9999987422 222333 2222 356677899999999998653
Q ss_pred ccccccHHHHhcCCCCc-EEEEcCCCc
Q 006864 297 TSKIFNDETFAKMKKGV-RIVNVARGG 322 (628)
Q Consensus 297 t~~li~~~~l~~mk~ga-ilIN~aRg~ 322 (628)
..+.++.+...++.. +++|.+...
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred --cccCHHHHHHHHhhhhceeccccCC
Confidence 377888887665543 888887543
No 132
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.78 E-value=1.9e-05 Score=79.40 Aligned_cols=127 Identities=11% Similarity=0.177 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHH--HcCCCEEEE-ECCCCChhHH
Q 006864 191 AEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA--KGLGMNVIA-HDPYAPADKA 267 (628)
Q Consensus 191 AE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l--~~~G~~V~~-~d~~~~~~~a 267 (628)
++|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++++ +|+.......
T Consensus 64 ~gy~v~~l~~~~~~~l---------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~ 125 (213)
T PRK05472 64 VGYNVEELLEFIEKIL---------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT 125 (213)
T ss_pred CCeeHHHHHHHHHHHh---------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC
Confidence 3578888888888765 222 235899999999999999863 467899887 4654211110
Q ss_pred HHcCCc---ccCHHHHhcc--CCEEEEcCCCCcc---ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 268 RAVGVE---LVSFDQALAT--ADFISLHMPLNPT---TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 268 ~~~g~~---~~sl~ell~~--aDvV~l~~Plt~~---t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
...|+. ..++++++++ .|.+++++|.... ...+.......-|....+.+|+.+|-+|+.++|..+|..
T Consensus 126 ~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 126 KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 011221 2357788765 9999999997654 122222233334666778999999999999999998864
No 133
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.77 E-value=5.2e-05 Score=59.47 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=41.8
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
+...|+||.++++++.|+++++||.+|.+++.. ++.+++.+.+|.
T Consensus 3 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 3 VFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 567899999999999999999999999998875 799999999987
No 134
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.76 E-value=8.9e-05 Score=77.12 Aligned_cols=103 Identities=14% Similarity=0.234 Sum_probs=67.5
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEE-EECCCCCh--hHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++||||+|.||+.+++.+... ++++. ++|+.... ..+...+.. +.++++++.++|+|++|+|-. ... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHH---H
Confidence 4799999999999999998865 57744 58887522 122334444 347999999999999999732 221 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhCCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDE---EALVRALDSGV 337 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde---~aL~~aL~~g~ 337 (628)
-....|+.|.-++..+-|.+.|. +.|.++.+++.
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 22233455666666777777664 35556555543
No 135
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.76 E-value=7.1e-05 Score=72.07 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=59.0
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.+++||++.|||-+. +|+.++..|...|+.|...+.+. .++++.+++||+|+.++.. .++|
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 46789999999999995 99999999999999999987653 2578889999999999973 4566
Q ss_pred cHHHHhcCCCCcEEEEcCCCch
Q 006864 302 NDETFAKMKKGVRIVNVARGGV 323 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~~ 323 (628)
..+ ++|+|+++||++.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 555 4699999999986543
No 136
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.74 E-value=9.9e-05 Score=78.99 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=63.4
Q ss_pred EEEEecChhHHHHHHHHHc-CCCEEEEECCCCCh---hHHHHcCCcc------------------c-CHHHHhccCCEEE
Q 006864 232 LAVMGFGKVGSEVARRAKG-LGMNVIAHDPYAPA---DKARAVGVEL------------------V-SFDQALATADFIS 288 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~-~G~~V~~~d~~~~~---~~a~~~g~~~------------------~-sl~ell~~aDvV~ 288 (628)
|||+|||+||+.+++.+.. -+|+|++.....+. ..+..+|+.. . ++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6899999999999999764 46898886432222 2233333221 1 5899999999999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.|+| .+.++.+++.+.+|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9876 457899999999999999998753
No 137
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00012 Score=76.62 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=65.9
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++... -+|.+.+++||+|+.+++.. +++
T Consensus 153 ~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~p----~~v 216 (285)
T PRK10792 153 YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGKP----GFI 216 (285)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCCc----ccc
Confidence 46789999999999999 99999999999999999987542 25888999999999999622 356
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
.. +++|+|+++||+|
T Consensus 217 ~~---~~vk~gavVIDvG 231 (285)
T PRK10792 217 PG---EWIKPGAIVIDVG 231 (285)
T ss_pred cH---HHcCCCcEEEEcc
Confidence 55 4469999999998
No 138
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.72 E-value=9.1e-05 Score=81.97 Aligned_cols=97 Identities=24% Similarity=0.318 Sum_probs=71.5
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh--hHHHHcCCcc---cCHHHHhccCCEEEEcCCCCccccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGVEL---VSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~~~---~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+.|++++|||.|.||+.+++.|+.+| .+|+++|+.... ..+...+... .++.+.+..+|+|+.+++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 378899999999999999999999999 789999987532 2344445332 2567788999999999763 356
Q ss_pred cccHHHHhcCC----CCcEEEEcCCCchhc
Q 006864 300 IFNDETFAKMK----KGVRIVNVARGGVID 325 (628)
Q Consensus 300 li~~~~l~~mk----~gailIN~aRg~~vd 325 (628)
+++.+.++.+. ...+++|.+...=+|
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 78888887652 235788876443333
No 139
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.71 E-value=0.00066 Score=69.03 Aligned_cols=131 Identities=21% Similarity=0.200 Sum_probs=92.6
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCC---EEEEECCC----CCh---------hHHHHcCCc-c-cCHHHHhccCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM---NVIAHDPY----APA---------DKARAVGVE-L-VSFDQALATAD 285 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~----~~~---------~~a~~~g~~-~-~sl~ell~~aD 285 (628)
+..+.++++.|+|.|..|+.+|..|...|+ +|+.+|+. ... ..++..+.. . .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 456888999999999999999999999997 49999987 221 112232211 1 36878889999
Q ss_pred EEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCC-eeEEEeeccCCCCCCCCCccccCCcEE
Q 006864 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVT 364 (628)
Q Consensus 286 vV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~L~~~~nvi 364 (628)
+|+.+.| .++++.+.++.|+++.++...+.- ..|.-+.++-+.|. +..-|. +. -..+..|++
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~-----~~~Q~nn~~ 162 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD-----FPNQVNNVL 162 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC-----Cccccceee
Confidence 9999887 477889999999999999988833 24444444445453 444332 21 233667999
Q ss_pred EcCCCCC
Q 006864 365 VTPHLGA 371 (628)
Q Consensus 365 lTPHig~ 371 (628)
+-|-+|-
T Consensus 163 ~fPg~~~ 169 (226)
T cd05311 163 GFPGIFR 169 (226)
T ss_pred ecchhhH
Confidence 9998773
No 140
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.71 E-value=0.00012 Score=72.23 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=73.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC---------------------Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG---------------------VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------~~~-~sl~ell~~aDvV 287 (628)
++|+|||+|.+|..+|..+...|++|++||.....-.....| ... .+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 589999999999999999999999999999643111111111 112 2577889999999
Q ss_pred EEcCCCCcccccccc--------HHHHhcCCCCcEEEEcCCCchhcHHH-HHHHHhCCCeeEEEee-ccCCCCCCCC---
Q 006864 288 SLHMPLNPTTSKIFN--------DETFAKMKKGVRIVNVARGGVIDEEA-LVRALDSGVVAQAALD-VFTEEPPAKD--- 354 (628)
Q Consensus 288 ~l~~Plt~~t~~li~--------~~~l~~mk~gailIN~aRg~~vde~a-L~~aL~~g~i~ga~lD-V~~~EP~~~~--- 354 (628)
++|+|...+-.+..| +.....++++.++|.-+.-.+=-.+. +...|++..-.+.-++ +|.+|=+...
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999994333332222 24455689999999998876655553 3344443211000001 2555544333
Q ss_pred CccccCCcEEE
Q 006864 355 SKLVQHENVTV 365 (628)
Q Consensus 355 ~~L~~~~nvil 365 (628)
..+...|+||+
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 34566788864
No 141
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.71 E-value=0.00023 Score=67.10 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=67.3
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|+|-+ .+|+.+|..|...|+.|...+... .++++.+++||+|+.+++.. +++
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 4779999999999987 579999999999999999988642 15788899999999999844 557
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
+.+. +|+|++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 6655 59999999998554
No 142
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.70 E-value=0.00011 Score=82.05 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=101.6
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc-----CCcc-cCHHHHhcc---CCEEEEcCCCCccccccccHHHHhcC
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPA-DKARAV-----GVEL-VSFDQALAT---ADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-----g~~~-~sl~ell~~---aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
||+.+|++|...|++|.+||+.... +...+. ++.. .+++++++. +|+|++++|-.+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 6999999999999999999998632 222221 3433 388988874 899999999888888888 5688889
Q ss_pred CCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006864 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (628)
Q Consensus 310 k~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~ 389 (628)
.+|.++||++....-|...+.+.+++..+.....=|.+.++-.. .-+ .++ .|| +.++++++ .-+.+.+-
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~-----~G~-siM---~GG-~~~a~~~~-~piL~~ia 148 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGAL-----HGP-SIM---PGG-QKEAYELV-APILEKIA 148 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHh-----cCC-EEE---EeC-CHHHHHHH-HHHHHHHh
Confidence 99999999999999999999999988877655555777664322 224 443 344 56666554 34444444
Q ss_pred H
Q 006864 390 G 390 (628)
Q Consensus 390 ~ 390 (628)
.
T Consensus 149 ~ 149 (459)
T PRK09287 149 A 149 (459)
T ss_pred h
Confidence 3
No 143
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.69 E-value=0.00023 Score=70.40 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=70.5
Q ss_pred CcccccccceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHH--HHcCCcc---cC----HHHHhccC
Q 006864 215 GKWLRSKYVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKA--RAVGVEL---VS----FDQALATA 284 (628)
Q Consensus 215 g~W~~~~~~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g~~~---~s----l~ell~~a 284 (628)
+-|+++...+.++.||++.|||-+. +|+.+|..|...|+.|..+|...-..+. ..+.-.. .+ +.+.+++|
T Consensus 48 ~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 48 GIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQS 127 (197)
T ss_pred CCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhC
Confidence 3455544558899999999999986 5999999999999999999742210000 0011111 12 77899999
Q ss_pred CEEEEcCCCCcccccc-ccHHHHhcCCCCcEEEEcC
Q 006864 285 DFISLHMPLNPTTSKI-FNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 285 DvV~l~~Plt~~t~~l-i~~~~l~~mk~gailIN~a 319 (628)
|+|+.+++. .++ +..+.+ |+|+++||++
T Consensus 128 DIVIsAvG~----~~~~i~~d~i---k~GavVIDVG 156 (197)
T cd01079 128 DVVITGVPS----PNYKVPTELL---KDGAICINFA 156 (197)
T ss_pred CEEEEccCC----CCCccCHHHc---CCCcEEEEcC
Confidence 999999983 345 666554 8999999998
No 144
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.67 E-value=0.00017 Score=73.49 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=68.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCC---CE-EEEECCCC-C-hh-HHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLG---MN-VIAHDPYA-P-AD-KARAVGVEL-VSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G---~~-V~~~d~~~-~-~~-~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
..++|||||.|++|+.+++.+...| .+ ++++++.. . .+ .....++.. .+++++++++|+|++++|-. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999987655 33 77787642 1 12 223346543 37889999999999999932 2233
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
++ ++.-..++ +.+||.++-| +..+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 32 22111233 5689998744 5555677777654
No 145
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00027 Score=73.36 Aligned_cols=102 Identities=24% Similarity=0.327 Sum_probs=77.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCCh--hHHHHcCCc-ccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA--DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
++|||||+|+||++++..|..-| -+|++.+|.... ..+..+|+. ..+.+++..++|+|+|++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 58999999999999999999888 589999998633 245567766 3467799999999999995 43 23
Q ss_pred HHHHhcCC---CCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 303 DETFAKMK---KGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 303 ~~~l~~mk---~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
.+.+..+| ++.+||.++-| +..+.|.+++.+-++.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vv 113 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVV 113 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceE
Confidence 56666676 68999999855 5666777777644443
No 146
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.65 E-value=0.00011 Score=71.15 Aligned_cols=94 Identities=26% Similarity=0.406 Sum_probs=67.7
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcCCc---c------------------------cCH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE---L------------------------VSF 277 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~---~------------------------~sl 277 (628)
.+...++.|+|.|+.|+..++.|+++|++|..+|.+... ......+.. . ..|
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 567799999999999999999999999999999976422 222233221 1 137
Q ss_pred HHHhccCCEEEEcCCC-CccccccccHHHHhcCCCCcEEEEcC
Q 006864 278 DQALATADFISLHMPL-NPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 278 ~ell~~aDvV~l~~Pl-t~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.+.++.+|+|+.++-. ....-.++.++.++.||++.+|+|++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 7889999999864432 44566799999999999999999996
No 147
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.65 E-value=0.00011 Score=70.25 Aligned_cols=89 Identities=21% Similarity=0.364 Sum_probs=60.6
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHcC--------Cc-------ccCHHHHhccCCEEEEcCCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVG--------VE-------LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g--------~~-------~~sl~ell~~aDvV~l~~Plt 294 (628)
+|+|+|.|+.|.++|..|...|.+|..|.+.... +.....+ +. ..+++++++.||+|++++|-.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 6899999999999999999999999999986411 1111111 11 127999999999999999943
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
. .+.+ -++....++++..+|++..|
T Consensus 81 ~-~~~~-~~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 A-HREV-LEQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp G-HHHH-HHHHTTTSHTT-EEEETS-S
T ss_pred H-HHHH-HHHHhhccCCCCEEEEecCC
Confidence 2 2222 34455557889999999865
No 148
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.64 E-value=0.00015 Score=77.08 Aligned_cols=93 Identities=24% Similarity=0.285 Sum_probs=66.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCC--hhHHHHcCCccc---CHHHHhccCCEEEEcCCCCcccccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP--ADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
+.|++++|||.|.||+.+++.|+..| .+|.++|+... .+.+..+|.... ++.+.+.++|+|+.++|... .+.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 68999999999999999999999876 67899998753 234555665443 35677889999999998443 2222
Q ss_pred ccHHHHhcC-CCCcEEEEcCCC
Q 006864 301 FNDETFAKM-KKGVRIVNVARG 321 (628)
Q Consensus 301 i~~~~l~~m-k~gailIN~aRg 321 (628)
+ +..++.. +++.++||++..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 2233322 357788888753
No 149
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.63 E-value=0.0051 Score=68.39 Aligned_cols=67 Identities=16% Similarity=0.273 Sum_probs=45.8
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCH---HHHHHHhcccCccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ---DSLKEIGKVHFVAR 626 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~---~~l~~L~~l~~v~~ 626 (628)
+.|-+...|+||++++|+.+|++++|||..+..... .++.+-+++-++..... +++++|++++.|..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~ 418 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHETSEAALRAALAAIEALDVVLG 418 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 555666789999999999999999999998876543 23445444444433223 45566666666543
No 150
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.62 E-value=0.00023 Score=74.75 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=73.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc--------------ccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE--------------LVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~--------------~~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|||.|.||..+|..|...|.+|..|++....+...+.|.. ..+.+++...+|+|++++|-.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 47999999999999999999999999999982222223333321 124566678999999999943
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
++...+ +.....++++.+||.+.-| +-.++.+.+.+...++.+
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 333333 2333345778888877654 455777777776666543
No 151
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00017 Score=75.50 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=66.4
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++... -+|.+..++||+|+.++-. .+++
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i 221 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLI 221 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----cccc
Confidence 46789999999999999 99999999999999999987532 1578889999999998763 3466
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+ ++|+|+++||+|-
T Consensus 222 ~~~---~vk~gavVIDvGi 237 (287)
T PRK14176 222 KAD---MVKEGAVIFDVGI 237 (287)
T ss_pred CHH---HcCCCcEEEEecc
Confidence 655 5699999999984
No 152
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00015 Score=58.74 Aligned_cols=66 Identities=14% Similarity=0.304 Sum_probs=55.3
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC-CCHHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~-~~~~~l~~L~~l~~v~~v 627 (628)
|.+..+|+||+++++++.|.++++||.+|..... .++.+.+.+.++.. ..++++++|+++++|..+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~~v~~v 69 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGVGDIEELVEELRSLPIVREV 69 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEeccccHHHHHHHHhCCCCeEEE
Confidence 5567899999999999999999999999988654 35677788888875 455899999999998775
No 153
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00015 Score=75.72 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=67.7
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.+++||++.|+|.+ ..|+.+|..|..+|+.|..++... .++.+.+++||+|+.+++.. +++
T Consensus 146 ~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 146 YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 4678999999999999 999999999999999998887542 25888999999999999732 677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
.++.+ |+|+++||+|-
T Consensus 210 ~~~~v---k~GavVIDVgi 225 (279)
T PRK14178 210 TPDMV---KPGATVIDVGI 225 (279)
T ss_pred CHHHc---CCCcEEEEeec
Confidence 77775 99999999984
No 154
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00017 Score=75.42 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=67.2
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-| .+|+.+|..|...|+.|..++... -+|.+.+++||+|+.+++ ..+++
T Consensus 151 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG----~p~~i 214 (285)
T PRK14191 151 YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVG----KPDLI 214 (285)
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecC----CCCcC
Confidence 4678999999999999 999999999999999999886432 136788999999999996 34577
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006864 302 NDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg 321 (628)
..+.+ |+|+++||++-.
T Consensus 215 ~~~~v---k~GavVIDvGi~ 231 (285)
T PRK14191 215 KASMV---KKGAVVVDIGIN 231 (285)
T ss_pred CHHHc---CCCcEEEEeecc
Confidence 76655 999999999843
No 155
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.58 E-value=0.0002 Score=79.40 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=67.6
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcCCccc---CHHHHhccCCEEEEcCCCCccccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVELV---SFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+.|++++|||.|.||+.+++.|+..|. +|+++++.... ..+...|.... ++.+.+.++|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 4788999999999999999999999997 89999987532 23444554333 4567788999999998733 45
Q ss_pred cccHHHHhcC-----CCCcEEEEcC
Q 006864 300 IFNDETFAKM-----KKGVRIVNVA 319 (628)
Q Consensus 300 li~~~~l~~m-----k~gailIN~a 319 (628)
++..+.++.+ +.+.++||.+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 6777777654 2456777775
No 156
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.55 E-value=0.00051 Score=71.92 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=73.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcc------------cCHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL------------VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~------------~sl~ell~~aDvV~l~~Plt~~ 296 (628)
++|+|||.|.||+.+|..|...|.+|..+++.. ..+...+.|... .+..++ +.+|+|++++|-. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 369999999999999999999999999999854 223333334421 245555 8999999999943 3
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeE
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g 340 (628)
+...+ +.....+.+++.+|.+.-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 44333 2333446677888888776 334566677676655543
No 157
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.54 E-value=0.00029 Score=74.03 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=65.9
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||.|. +|+.+|..|...|+.|..+++.. .+|.+.+++||+|+.+++ .+ +++
T Consensus 153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~---~~v 216 (283)
T PRK14192 153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KP---ELI 216 (283)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CC---CcC
Confidence 46789999999999998 99999999999999999988631 246777899999999997 33 256
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006864 302 NDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg 321 (628)
..+. +|+|++++|++-.
T Consensus 217 ~~~~---lk~gavViDvg~n 233 (283)
T PRK14192 217 KKDW---IKQGAVVVDAGFH 233 (283)
T ss_pred CHHH---cCCCCEEEEEEEe
Confidence 6544 6999999999743
No 158
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.53 E-value=0.0002 Score=70.16 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=77.9
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hH----HH-------HcC-------------Ccc-cCHHHHhccC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK----AR-------AVG-------------VEL-VSFDQALATA 284 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~----a~-------~~g-------------~~~-~sl~ell~~a 284 (628)
+|+|||.|.||+.+|..+...|++|..||+.... +. .. ..| +.. .+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6899999999999999999999999999987421 11 00 111 111 3688888 99
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccCCCCCCCCCccccCCcE
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENV 363 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~~EP~~~~~~L~~~~nv 363 (628)
|+|+=++|-.-+.+.-+-++.-+.++++++|...+++ +.-..|...+.. .++ .++-.|. |+ ...||.+ |
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~p~R~--ig~Hf~~--P~-~~~~lVE---v 149 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSRPERF--IGMHFFN--PP-HLMPLVE---V 149 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSSTGGGE--EEEEE-S--ST-TT--EEE---E
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCcCceE--EEEeccc--cc-ccCceEE---E
Confidence 9999999977777766666666678899988876544 444556666643 366 5555553 43 2345554 4
Q ss_pred EEcCC
Q 006864 364 TVTPH 368 (628)
Q Consensus 364 ilTPH 368 (628)
+-.|+
T Consensus 150 v~~~~ 154 (180)
T PF02737_consen 150 VPGPK 154 (180)
T ss_dssp EE-TT
T ss_pred eCCCC
Confidence 55554
No 159
>PLN00203 glutamyl-tRNA reductase
Probab=97.52 E-value=0.0002 Score=81.05 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=68.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHc-CC--cc---cCHHHHhccCCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAV-GV--EL---VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~-g~--~~---~sl~ell~~aDvV~l~~Plt~~ 296 (628)
.+.+++++|||.|.||+.+++.|...|. +|+++++.... ..+..+ +. .. .++.+.+.+||+|+.++|.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s--- 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS--- 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence 4789999999999999999999999997 79999987532 222223 22 11 2566788999999998763
Q ss_pred ccccccHHHHhcCCCC-------cEEEEcCC
Q 006864 297 TSKIFNDETFAKMKKG-------VRIVNVAR 320 (628)
Q Consensus 297 t~~li~~~~l~~mk~g-------ailIN~aR 320 (628)
...++.++.++.++++ -+|||.+=
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 4668888888877432 37777763
No 160
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.0015 Score=70.51 Aligned_cols=142 Identities=22% Similarity=0.280 Sum_probs=89.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--------------------HHHHcC-CcccCHHHHhccCCEEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--------------------KARAVG-VELVSFDQALATADFIS 288 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--------------------~a~~~g-~~~~sl~ell~~aDvV~ 288 (628)
.+|||||||-||..+|..+...|++|++||-....- .+.+.| .+..+--+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 799999999999999999999999999999543111 111222 22222223455999999
Q ss_pred EcCCCCcccc-cc------cc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC--CeeEEEeec---cCCCCCCCC
Q 006864 289 LHMPLNPTTS-KI------FN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQAALDV---FTEEPPAKD 354 (628)
Q Consensus 289 l~~Plt~~t~-~l------i~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g--~i~ga~lDV---~~~EP~~~~ 354 (628)
+|+| ||-+. +- .+ +..-..||+|.++|==+....=-.+.++..|.+. .+ ..+-|+ |.+|-..+.
T Consensus 90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~PG 167 (436)
T COG0677 90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCCC
Confidence 9999 44333 11 11 2334569999999988776666677777666543 22 122342 444433233
Q ss_pred C---ccccCCcEEEcCCCCCCcHHHHH
Q 006864 355 S---KLVQHENVTVTPHLGASTKEAQE 378 (628)
Q Consensus 355 ~---~L~~~~nvilTPHig~~T~ea~~ 378 (628)
+ .+...|+| +||.|.++-+
T Consensus 168 ~~~~el~~~~kV-----IgG~tp~~~e 189 (436)
T COG0677 168 NVLKELVNNPKV-----IGGVTPKCAE 189 (436)
T ss_pred chhhhhhcCCce-----eecCCHHHHH
Confidence 3 44566777 5888877643
No 161
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.46 E-value=0.00038 Score=72.10 Aligned_cols=123 Identities=18% Similarity=0.236 Sum_probs=75.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCC----CEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++|||||+|+||+++++.|...+ -+++++|+.... .++.. .+..+++.+||+|++++| ...++.++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~- 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL- 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-
Confidence 368999999999999999998765 258999886421 23322 367788899999999998 333444443
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig 370 (628)
+....++++.+|..++- +..+.+.+.+... ++. .+..+-| -++..-..+++|.-.
T Consensus 76 ~i~~~l~~~~iIS~~aG---i~~~~l~~~~~~~~~vv----r~mPn~p-----~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 76 EIKPYLGSKLLISICGG---LNLKTLEEMVGVEAKIV----RVMPNTP-----SLVGQGSLVFCANNN 131 (260)
T ss_pred HHHhhccCCEEEEEeCC---ccHHHHHHHcCCCCeEE----EECCCch-----hHhcceeEEEEeCCC
Confidence 23334555555444442 3355555555433 232 2333332 345556677777543
No 162
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.46 E-value=0.00059 Score=71.43 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=67.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 47899999999999985 69999999999999999886542 2578889999999999973 4567
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+.+ |+|+++||++--.
T Consensus 215 ~~~~v---k~GavVIDvGin~ 232 (284)
T PRK14170 215 KKDYI---KPGAIVIDVGMDR 232 (284)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 76655 8999999998443
No 163
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.45 E-value=0.00036 Score=57.18 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=53.5
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l 621 (628)
-+-+..+|+||.++++...|+++++||.++...+...++.+.+++.++...++++++.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 35567899999999999999999999999998877677899999999876666888888764
No 164
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00038 Score=72.70 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=66.3
Q ss_pred ceeeecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-| .+|+.+|..|...|+.|..++.+. -+|.+.+++||+|+.++. ..+++
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvG----kp~~i 214 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVG----KPNLI 214 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecC----ccccc
Confidence 4679999999999999 899999999999999998876432 147788999999999997 34567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 215 ~~~~v---k~gavvIDvGi 230 (281)
T PRK14183 215 TEDMV---KEGAIVIDIGI 230 (281)
T ss_pred CHHHc---CCCcEEEEeec
Confidence 76655 89999999983
No 165
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.44 E-value=0.00042 Score=74.71 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCEEEEECCCCC------hhHHHHcCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCc
Q 006864 241 GSEVARRAKGLGMNVIAHDPYAP------ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (628)
Q Consensus 241 G~~vA~~l~~~G~~V~~~d~~~~------~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga 313 (628)
|..+|.+|...|++|++||++.. .+.....|+... +..+++++||+|++++|....++.++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78999999999999999998753 123445676544 78889999999999999554366666 46677889999
Q ss_pred EEEEcCCCchhcH-HHHHHHHh
Q 006864 314 RIVNVARGGVIDE-EALVRALD 334 (628)
Q Consensus 314 ilIN~aRg~~vde-~aL~~aL~ 334 (628)
+|||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887765 66667664
No 166
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.43 E-value=0.0012 Score=71.13 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=71.6
Q ss_pred ceeeecCCeEEEEec-ChhHHHHHHHHHc-CC-CEEEEECCCCCh--hHHHHcC-CcccCHHHHhccCCEEEEcCCCCcc
Q 006864 223 VGVSLVGKTLAVMGF-GKVGSEVARRAKG-LG-MNVIAHDPYAPA--DKARAVG-VELVSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 223 ~g~~l~GktiGIIGl-G~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~g-~~~~sl~ell~~aDvV~l~~Plt~~ 296 (628)
.+.++.||++.|+|. |.||+.+++.|.. .| .+++.+++.... ..+.+.+ ....++++.+.++|+|+.+.-..
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 456799999999998 8999999999974 56 488888876421 1122222 23447889999999998766422
Q ss_pred ccc-cccHHHHhcCCCCcEEEEcCCCchhcH
Q 006864 297 TSK-IFNDETFAKMKKGVRIVNVARGGVIDE 326 (628)
Q Consensus 297 t~~-li~~~~l~~mk~gailIN~aRg~~vde 326 (628)
.. .++.+. ++++.++||.|+..=||.
T Consensus 227 -~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 -KGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred -cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 34 377754 489999999999876664
No 167
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.00058 Score=71.60 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=65.6
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .+|.+.+++||+|+.++.. .+++
T Consensus 153 y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvGk----p~~i 216 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIGS----PLKL 216 (288)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----CCcc
Confidence 46789999999999885 69999999999999999876432 2578899999999999972 3677
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
..+.+ |+|+++||++
T Consensus 217 ~~~~v---k~GavVIDvG 231 (288)
T PRK14171 217 TAEYF---NPESIVIDVG 231 (288)
T ss_pred CHHHc---CCCCEEEEee
Confidence 76655 8999999998
No 168
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.42 E-value=0.00033 Score=55.99 Aligned_cols=59 Identities=14% Similarity=0.314 Sum_probs=49.2
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l 621 (628)
+-+..+|+||.++++.++|+++|+||.++........+.+...+.++. .+.+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--HHHHHHHHHHC
Confidence 445779999999999999999999999998876554578888999987 66788887763
No 169
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.41 E-value=0.00022 Score=60.15 Aligned_cols=67 Identities=12% Similarity=0.318 Sum_probs=51.7
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCH---HHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ---DSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~---~~l~~L~~l~~v~~v 627 (628)
|-+...|+||+++.|++.+++.++||..++.....+++.+.+.+.++-.-.+ .++++|+++|+|.+|
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISV 78 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEE
Confidence 3456789999999999999999999999999876556777777766543222 689999999999876
No 170
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.37 E-value=0.00042 Score=72.47 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=63.0
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCChh--HHHHcC----Ccc-cCHHHHhccCCEEEEcCCCCcc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPAD--KARAVG----VEL-VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~--~a~~~g----~~~-~sl~ell~~aDvV~l~~Plt~~ 296 (628)
..+.+|++.|+|.|.+|++++..|..+| .+|.+++++.... .+...+ +.. .++.+.+.++|+|+.++|..-.
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 4678899999999999999999999999 7999999875221 122222 111 2345777899999999996532
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aR 320 (628)
...-...-.+..++++.+++|+.-
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec
Confidence 110001112234566666666643
No 171
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.36 E-value=0.0035 Score=66.61 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=74.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc--------------cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------------VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------------~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|||.|.||..+|.+|...|.+|.++.+.. .+.....|... .+..+.+..+|+|++++|..+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC
Confidence 689999999999999999999999999988764 33333333211 112234678999999998443
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEE
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga 341 (628)
+...+ +..-..++++..++...-| +-.++.|.+.+...++.++
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 33322 2333346778888887655 5567778888877776654
No 172
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.36 E-value=0.00061 Score=71.77 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=67.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLI 215 (297)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46799999999999875 69999999999999999886542 2578889999999999983 3567
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+.+ |+|+++||++--.
T Consensus 216 ~~~~i---k~gavVIDvGin~ 233 (297)
T PRK14186 216 GAEMV---KPGAVVVDVGIHR 233 (297)
T ss_pred CHHHc---CCCCEEEEecccc
Confidence 76655 8999999998444
No 173
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.36 E-value=0.00071 Score=70.90 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=68.2
Q ss_pred cceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 222 YVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 222 ~~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
+.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .++.+.+++||+|+.++. ..++
T Consensus 151 ~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG----~p~~ 214 (284)
T PRK14190 151 EYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVG----KPKL 214 (284)
T ss_pred HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----CCCc
Confidence 346789999999999874 79999999999999999886432 257889999999999996 3457
Q ss_pred ccHHHHhcCCCCcEEEEcCCCc
Q 006864 301 FNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~ 322 (628)
++.+.+ |+|+++||++.-.
T Consensus 215 i~~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 215 ITADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred CCHHHc---CCCCEEEEeeccc
Confidence 887776 8999999998554
No 174
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.00066 Score=71.04 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=66.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... .+|.+.+++||+|+.+++. .+++
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i 213 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFI 213 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999885 69999999999999999886542 1578889999999999983 4567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+. .|+|+++||++-
T Consensus 214 ~~~~---vk~GavVIDvGi 229 (282)
T PRK14169 214 GADA---VKPGAVVIDVGI 229 (282)
T ss_pred CHHH---cCCCcEEEEeec
Confidence 7765 589999999984
No 175
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.34 E-value=0.00048 Score=55.99 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=46.0
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l 621 (628)
+.+..+|+||.+++|+++|+++||||.+|.++.... .+++.+.+|. ++.+.+.|++.
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~--~~~~~~~L~~~ 60 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSD--PDKAKEALKEA 60 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECC--HHHHHHHHHHC
Confidence 566789999999999999999999999999876433 5888888855 45677777653
No 176
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.33 E-value=0.00064 Score=69.20 Aligned_cols=106 Identities=26% Similarity=0.358 Sum_probs=65.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-CC-------CC-ChhHH----HHcC-------CcccCHHHHh-cc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DP-------YA-PADKA----RAVG-------VELVSFDQAL-AT 283 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d~-------~~-~~~~a----~~~g-------~~~~sl~ell-~~ 283 (628)
.++.|+++.|.|+|++|+.+|+.|..+|++|++. |. .- +.+.. ...| ...++.++++ .+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 5689999999999999999999999999999954 43 11 11111 1112 1122333433 26
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
||+++-|.+ .+.++.+...+++ -.+|+-.+-+.+ ..++ .+.|+++.+
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t~~a-~~~L~~rGi 153 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-TPEA-DEILHERGV 153 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-CHHH-HHHHHHCCC
Confidence 788877764 4556777777776 335555555555 3333 455555444
No 177
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.31 E-value=0.00075 Score=60.38 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=58.1
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCChhHHHH----cCCccc-CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcE
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPADKARA----VGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~----~g~~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gai 314 (628)
-+..+++.|+..|++|.+|||+.+...... .+++.. ++++.++.+|+|+++++ .++-+.+--.+....|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 356799999999999999999987665555 456655 79999999999999998 444444333455567889999
Q ss_pred EEEcC
Q 006864 315 IVNVA 319 (628)
Q Consensus 315 lIN~a 319 (628)
|+|+-
T Consensus 97 iiD~~ 101 (106)
T PF03720_consen 97 IIDGR 101 (106)
T ss_dssp EEESS
T ss_pred EEECc
Confidence 99973
No 178
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.30 E-value=0.00072 Score=57.08 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=58.1
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC-CHHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~-~~~~l~~L~~l~~v~~v 627 (628)
.|.|-+...++||++++|+.++...|.||..|.++..+.++..-+.+.++++- -+.+.++|.++.+|.+|
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~KL~dV~~V 73 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNKLVDVAHV 73 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhcCcCeEEE
Confidence 36777788899999999999999999999999999887777787777775432 33688889999988775
No 179
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.30 E-value=9e-05 Score=86.79 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=109.1
Q ss_pred EEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC--CeeE----EEeeccCCCCCCCCCccccC
Q 006864 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQ----AALDVFTEEPPAKDSKLVQH 360 (628)
Q Consensus 287 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g--~i~g----a~lDV~~~EP~~~~~~L~~~ 360 (628)
|++|+|... +..++ ++....++++++|+|++.-+.--.++..+.|..+ ++.| ||-++.+.| .++..||+.
T Consensus 1 vila~Pv~~-~~~~~-~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~--~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPVAQ-TGPLL-ARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVD--AALADLYVG 76 (673)
T ss_pred CEEEcCHHH-HHHHH-HHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhh--hhChhHhCC
Confidence 578999543 44444 3444668999999999998866555655555432 2333 344444433 356789999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccc------cHHHHH---HHH-----hH
Q 006864 361 ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLA---KKL-----GR 426 (628)
Q Consensus 361 ~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~------p~~~lA---erl-----G~ 426 (628)
.++|+||.-... .++.+ .++++...+..... .+++++||++- |++-.. ..+ ..
T Consensus 77 ~~~il~p~~~~~-~~~~~-----~~~~l~~~~Ga~~~-------~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~ 143 (673)
T PRK11861 77 RNVVLCALPENA-PDALA-----RVEAMWRAARADVR-------AMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAE 143 (673)
T ss_pred CeEEEecCCCCC-HHHHH-----HHHHHHHHcCCEEE-------ECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChh
Confidence 999999966443 23322 23333333322222 46677777755 332211 111 22
Q ss_pred HHHHHhcCCCCceEEEEEEeecCCCCCCCcccchHHHHHhhccccccCcccccchH
Q 006864 427 LAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (628)
Q Consensus 427 la~qL~~g~~~~~~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vnlvNA~ 482 (628)
++.+|++| +|++++++..+++. +|.+....|+..+...|+.+..+...+.++.
T Consensus 144 ~~~~~a~~--gfrd~tRia~~~p~-lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l 196 (673)
T PRK11861 144 LKFSYAAG--GFRDFTRIAASSPE-MWRDVCLANRAALLDELDAYTAVLARLRAAI 196 (673)
T ss_pred HHHHhccc--chhcccccccCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23467777 89999999999998 9999999999877666665555444444443
No 180
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.30 E-value=0.0015 Score=64.30 Aligned_cols=97 Identities=21% Similarity=0.106 Sum_probs=64.8
Q ss_pred eeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHc----CCc-----cc---CHHHHhccCCEEE
Q 006864 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAV----GVE-----LV---SFDQALATADFIS 288 (628)
Q Consensus 224 g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~----g~~-----~~---sl~ell~~aDvV~ 288 (628)
|..+.|+++.|+|. |.+|+.+++.|...|.+|..+++..... ....+ +.. .. ++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 55678999999995 9999999999999999999998764211 11111 111 11 2457788999999
Q ss_pred EcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006864 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (628)
Q Consensus 289 l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v 324 (628)
.+.|.... ..+.... ..+++.+++|+.+..-+
T Consensus 103 ~at~~g~~--~~~~~~~--~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVE--LLEKLAW--APKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCce--echhhhc--ccCceeEEEEccCCCCC
Confidence 99885543 1111111 24557788888766544
No 181
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.00036 Score=57.29 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=52.1
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC---CCHHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE---PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~---~~~~~l~~L~~l~~v~~v 627 (628)
.|-+.-.|+||.++.+++.|+++++||..|.......++.+.+.+.++.. .-++++++|+++++|.++
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~ 72 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV 72 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence 35566789999999999999999999999987543334777777766533 223688999999988764
No 182
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.29 E-value=0.00051 Score=57.96 Aligned_cols=69 Identities=9% Similarity=0.138 Sum_probs=55.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEe--CCCCCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV--DEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~v--D~~~~~~~l~~L~~l~~v~~v 627 (628)
|++-+...|+||++.+|++++...|+||..+.++..+..+..=|.|.+ |+..-+.+.++|.++.+|.+|
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V 73 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQV 73 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEE
Confidence 677778899999999999999999999999999987776766555553 333334678888888888775
No 183
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.28 E-value=0.0009 Score=70.55 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=66.7
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++++.+++||+|+.++.. .+++
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i 224 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMI 224 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46789999999999986 69999999999999999987542 2578899999999999863 3677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 225 ~~~~v---k~gavVIDvGi 240 (299)
T PLN02516 225 KGDWI---KPGAAVIDVGT 240 (299)
T ss_pred CHHHc---CCCCEEEEeec
Confidence 77655 89999999984
No 184
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.24 E-value=0.00099 Score=69.71 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=66.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+..++||+|+.++. -.+++
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvG----kp~~i 214 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAG----CVNLL 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCC----CcCcc
Confidence 46789999999999885 69999999999999999887542 248888999999999997 34677
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
..+.+ |+|+++||++
T Consensus 215 ~~~~v---k~GavVIDvG 229 (282)
T PRK14166 215 RSDMV---KEGVIVVDVG 229 (282)
T ss_pred CHHHc---CCCCEEEEec
Confidence 77654 8999999998
No 185
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.24 E-value=0.0008 Score=59.06 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=56.9
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC-CCCHHHHHHHhcccCcccc
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-EPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~-~~~~~~l~~L~~l~~v~~v 627 (628)
..++|-+...|+||++++|+.+++..|+||..+.++..+..+..=|.|-+.+ ..=+.+.++|.++.+|.+|
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV 78 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKV 78 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEE
Confidence 4578888889999999999999999999999999999888777766666653 2223577778888887765
No 186
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.23 E-value=0.00087 Score=71.67 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=66.1
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... -++.+..++||+|+.++.. .+++
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v 271 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLV 271 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999886 69999999999999999876542 2578889999999999973 4577
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 272 ~~d~v---k~GavVIDVGi 287 (345)
T PLN02897 272 RGSWL---KPGAVVIDVGT 287 (345)
T ss_pred CHHHc---CCCCEEEEccc
Confidence 76655 89999999984
No 187
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.22 E-value=0.0011 Score=69.51 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=66.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+..++||+|+.++. ..+++
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvG----k~~~i 216 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVG----KPEFI 216 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCC----CcCcc
Confidence 46789999999999875 69999999999999999987542 157788999999999997 34567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 217 ~~~~i---k~gavVIDvGi 232 (284)
T PRK14177 217 KADWI---SEGAVLLDAGY 232 (284)
T ss_pred CHHHc---CCCCEEEEecC
Confidence 76654 89999999984
No 188
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.22 E-value=0.01 Score=61.41 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=74.3
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-C-------CCC-ChhHH------H-Hc------------CCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PYA-PADKA------R-AV------------GVELV 275 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~~-~~~~a------~-~~------------g~~~~ 275 (628)
+.++.|+|+.|-|||++|+.+|+.|..+|++|++. | |.- +.+.. + +. +.+.+
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 46789999999999999999999999999999953 3 331 11100 0 11 23344
Q ss_pred CHHHHhc-cCCEEEEcCCCCccccccccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 276 SFDQALA-TADFISLHMPLNPTTSKIFNDETFAKMK--KGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 276 sl~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+-++++. +||+++-|. +.+.|+.+...+++ +-.+|+-.+-+.+-. ++ .+.|.+..|
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~a-~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-EA-IEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 5556554 799998875 57889998888884 345677777777655 43 455655544
No 189
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.22 E-value=0.0012 Score=65.73 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=77.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~ 308 (628)
.+++|||- |.+|+.+++.++..|+.|. +++||+|++|+|... +. +.++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~~-~~-----~~i~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPIDA-AL-----NYIES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHHH-HH-----HHHHH
Confidence 37899988 9999999999999999985 368999999999553 23 33333
Q ss_pred CCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCC----CCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 006864 309 MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA----KDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384 (628)
Q Consensus 309 mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~----~~~~L~~~~nvilTPHig~~T~ea~~~~~~~~ 384 (628)
+. .+++|+++-+.- +.++ . .++.+..|+. +...|+ .++++++. ....++
T Consensus 51 ~~--~~v~Dv~SvK~~----i~~~--~-------~~~vg~HPMfGp~~a~~~lf--~~~iv~~~--~~~~~~-------- 103 (197)
T PRK06444 51 YD--NNFVEISSVKWP----FKKY--S-------GKIVSIHPLFGPMSYNDGVH--RTVIFIND--ISRDNY-------- 103 (197)
T ss_pred hC--CeEEeccccCHH----HHHh--c-------CCEEecCCCCCCCcCccccc--ceEEEECC--CCCHHH--------
Confidence 33 379999987752 2222 1 2445555542 223444 46666543 222222
Q ss_pred HHHHHHHHcCCCCCCcccCCCCCccccccccc
Q 006864 385 AEAVVGALRGELSATAINAPMVPSEVLSELAP 416 (628)
Q Consensus 385 ~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p 416 (628)
.+.+.++++|. +.-.++++++|++--
T Consensus 104 ~~~~~~l~~G~------~~~~~t~eeHD~~~A 129 (197)
T PRK06444 104 LNEINEMFRGY------HFVEMTADEHDLLMS 129 (197)
T ss_pred HHHHHHHHcCC------EEEEeCHHHHHHHHH
Confidence 23455556542 223678999988553
No 190
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.22 E-value=0.00096 Score=71.69 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=66.3
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...++.|..+.... -++.+.+++||+|+.++. ..+++
T Consensus 225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvG----kp~~i 288 (364)
T PLN02616 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVG----QPNMV 288 (364)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCC----CcCcC
Confidence 46789999999999875 69999999999999999886542 257888999999999997 34677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++=
T Consensus 289 ~~d~v---K~GAvVIDVGI 304 (364)
T PLN02616 289 RGSWI---KPGAVVIDVGI 304 (364)
T ss_pred CHHHc---CCCCEEEeccc
Confidence 77655 89999999983
No 191
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.0011 Score=69.50 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=65.7
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... .++.+.+++||+|+.+++.
T Consensus 147 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~---- 210 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV---- 210 (287)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999885 699999999887 78998876532 2588889999999999973
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg 321 (628)
.+++..+.+ |+|+++||++--
T Consensus 211 p~~i~~~~i---k~GavVIDvGin 231 (287)
T PRK14181 211 PLFIKEEMI---AEKAVIVDVGTS 231 (287)
T ss_pred cCccCHHHc---CCCCEEEEeccc
Confidence 357777655 899999999843
No 192
>PRK08577 hypothetical protein; Provisional
Probab=97.21 E-value=0.0023 Score=59.93 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=55.2
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEE--EEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGI--MAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al--~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
.+.+-+...|+||+++.|++.|+++++||.+++......++.+. +.+++++. .-.+++++|+++++|.+|
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V 129 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEV 129 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEE
Confidence 35567788999999999999999999999999986655455454 44566653 234899999999999876
No 193
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.21 E-value=0.00084 Score=70.29 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=87.2
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHH--cCCc-------ccCHHHHhccCCEEEEcCCCC-cc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA--VGVE-------LVSFDQALATADFISLHMPLN-PT 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--~g~~-------~~sl~ell~~aDvV~l~~Plt-~~ 296 (628)
+...++.|||.|-+|..-|+.+.++|.+|...|.+.+..+..+ .+.+ ...+++.+.++|+|+-++=.. ..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 5567899999999999999999999999999987643222111 1211 124889999999998765322 23
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEE--EcCCCCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT--VTPHLGA 371 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvi--lTPHig~ 371 (628)
.-.++.++.+++||||++|||++ ++.|.+. -...|-.-++|-+..+-++ +-|.+=+
T Consensus 246 aPkLvt~e~vk~MkpGsVivDVA-------------iDqGGc~------Et~~~TTh~~PtY~~~gvvhY~VaNmPg 303 (371)
T COG0686 246 APKLVTREMVKQMKPGSVIVDVA-------------IDQGGCF------ETSHPTTHDDPTYEVDGVVHYGVANMPG 303 (371)
T ss_pred CceehhHHHHHhcCCCcEEEEEE-------------EcCCCce------eccccccCCCCceeecCEEEEecCCCCc
Confidence 45678899999999999999995 6666652 1223333456766655543 4444433
No 194
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.21 E-value=0.00076 Score=57.77 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=56.4
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC-CCC--CHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD-EEP--NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD-~~~--~~~~l~~L~~l~~v~~v 627 (628)
++|-+...|+||++++|++++.+.|+||..+.++..+..+..=|.|.++ ... =+.+.++|+++.+|.+|
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV 74 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTV 74 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEE
Confidence 5677778899999999999999999999999999988888887777775 222 23677788888887765
No 195
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.20 E-value=0.0012 Score=69.23 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=67.3
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... -++.+.+++||+|+.++. ..+++
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvG----kp~~i 212 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVG----RPHLI 212 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecC----CcCcc
Confidence 46789999999999875 79999999999999999876542 157888999999999997 24677
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006864 302 NDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aRg~ 322 (628)
..+.+ |+|+++||++--.
T Consensus 213 ~~~~v---k~GavVIDVGin~ 230 (287)
T PRK14173 213 TPEMV---RPGAVVVDVGINR 230 (287)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 76655 8999999998544
No 196
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.19 E-value=0.0012 Score=69.46 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=66.4
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .++.+.+++||+|+.++.. .+++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i 217 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFV 217 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999885 69999999999999999887642 2578889999999999973 4567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 218 ~~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 218 KYSWI---KKGAIVIDVGI 233 (294)
T ss_pred CHHHc---CCCCEEEEecc
Confidence 77665 89999999983
No 197
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.18 E-value=0.0013 Score=68.74 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=65.7
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -+|.+..++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFI 215 (278)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46789999999999875 69999999999999999887542 2578889999999999983 4577
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
..+.+ |+|+++||++
T Consensus 216 ~~~~i---k~gavVIDvG 230 (278)
T PRK14172 216 DEEYV---KEGAIVIDVG 230 (278)
T ss_pred CHHHc---CCCcEEEEee
Confidence 76654 8999999997
No 198
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.17 E-value=0.0017 Score=69.23 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=59.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh-h-HHHHc---C--Ccc-cCHHHHhccCCEEEEcCCCCccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KARAV---G--VEL-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~~~---g--~~~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
..++++|||.|.+|+.+++.+.. ++ .+|.+||++... + .+... + +.. .++++++++||+|+.+.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 36899999999999999986653 55 689999987532 2 22222 3 332 37889999999998888743
Q ss_pred cccccHHHHhcCCCCcEEEEc
Q 006864 298 SKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~ 318 (628)
..++.. +.+++|+ +||+
T Consensus 201 ~pvl~~---~~l~~g~-~i~~ 217 (314)
T PRK06141 201 EPLVRG---EWLKPGT-HLDL 217 (314)
T ss_pred CCEecH---HHcCCCC-EEEe
Confidence 455655 3468998 4554
No 199
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.17 E-value=0.0076 Score=67.84 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=82.6
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEEEECCCCChhHH-----------------HH-cC--Cccc-CHHHHhccCCE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPADKA-----------------RA-VG--VELV-SFDQALATADF 286 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a-----------------~~-~g--~~~~-sl~ell~~aDv 286 (628)
++|+|||+|.+|..+|..|... |++|++||.....-.. .+ .+ .... ++++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999865 6899999965321111 00 01 1122 46778899999
Q ss_pred EEEcCCCCccc-----------ccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee---ccCCCC
Q 006864 287 ISLHMPLNPTT-----------SKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD---VFTEEP 350 (628)
Q Consensus 287 V~l~~Plt~~t-----------~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD---V~~~EP 350 (628)
+++|+|..... .++.. +..-..++++.++|.-+.-.+=-.+.+.+.+.+.. .| .| +|.+|=
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g--~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG--INFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CC--CCeEEEECCCc
Confidence 99999732211 12221 23445679999999887755555556666666421 01 22 355665
Q ss_pred CCCC---CccccCCcEEE
Q 006864 351 PAKD---SKLVQHENVTV 365 (628)
Q Consensus 351 ~~~~---~~L~~~~nvil 365 (628)
+.+. ..++..|+||+
T Consensus 159 l~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred cCCCCcccccCCCCEEEE
Confidence 4333 34566677764
No 200
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.16 E-value=0.0013 Score=68.85 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=65.4
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -+|.+.+++||+|+.+++. .+++
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i 215 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 215 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcC
Confidence 46789999999999875 69999999999999999887542 1577889999999999983 4567
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006864 302 NDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~a 319 (628)
..+. .|+|+++||++
T Consensus 216 ~~~~---vk~gavVIDvG 230 (282)
T PRK14180 216 TADM---VKEGAVVIDVG 230 (282)
T ss_pred CHHH---cCCCcEEEEec
Confidence 7655 48999999998
No 201
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.0014 Score=68.48 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=66.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li 301 (628)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i 214 (282)
T PRK14182 151 ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELV 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 46789999999999885 69999999999999999987542 2477889999999999973 4677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006864 302 NDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 302 ~~~~l~~mk~gailIN~aR 320 (628)
..+.+ |+|+++||++-
T Consensus 215 ~~~~i---k~gaiVIDvGi 230 (282)
T PRK14182 215 KGAWV---KEGAVVIDVGM 230 (282)
T ss_pred CHHHc---CCCCEEEEeec
Confidence 77665 89999999984
No 202
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=97.12 E-value=0.0011 Score=53.85 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=50.1
Q ss_pred CCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC--CHHHHHHHhcccCcccc
Q 006864 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP--NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 567 D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~--~~~~l~~L~~l~~v~~v 627 (628)
|+||++.+|+.++...|+||..|.++..+..+..-+.|.++... -+.+.++|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 68999999999999999999999999988888888878776633 33688999999988765
No 203
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.10 E-value=0.0021 Score=68.93 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCeEEEEecChhHHHHHHHHHc-C-CCEEEEECCCCCh-hH----HHHcCCc---ccCHHHHhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-L-GMNVIAHDPYAPA-DK----ARAVGVE---LVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~-G~~V~~~d~~~~~-~~----a~~~g~~---~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
-+++||||.|.+|+..++.+.. + .-+|.+||++... +. ..+.|+. ..+.++++++||+|++|+|-. .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4789999999999997777653 2 3589999998632 11 1234532 237999999999999999743 4
Q ss_pred ccccHHHHhcCCCCcEEEEcCCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg 321 (628)
.++..+ .+|||+.+..++.-
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 566554 35999999998743
No 204
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.08 E-value=0.0039 Score=69.27 Aligned_cols=109 Identities=24% Similarity=0.271 Sum_probs=73.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-C-------CC-CChhHH------------------HHcCCcccC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PY-APADKA------------------RAVGVELVS 276 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~-~~~~~a------------------~~~g~~~~s 276 (628)
|.+|.|+|+.|.|+|++|+..|+.|..+|++|++. | +. .+.+.. ...+++..+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 56799999999999999999999999999999983 3 22 111100 111334445
Q ss_pred HHHHhc-cCCEEEEcCCCCccccccccHHHHhcCCC-CcE-EEEcCCCchhcHHHHHHHHhCCCe
Q 006864 277 FDQALA-TADFISLHMPLNPTTSKIFNDETFAKMKK-GVR-IVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 277 l~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk~-gai-lIN~aRg~~vde~aL~~aL~~g~i 338 (628)
-++++. .||+++-|. +.+.|+++...+++. |+. |+--|.+ .+..++.....+.|.+
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCCcE
Confidence 556544 699998765 578899988888865 454 4455555 6666665544444443
No 205
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.04 E-value=0.0021 Score=67.45 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=81.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHc--CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG--LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.+.++.||++.|||-+. +|+.+|..|.. .++.|..+.... .++.+.+++||+|+.++.. .+
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGk----p~ 215 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGV----AH 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCC----cC
Confidence 47789999999999875 79999999987 789999886542 2588899999999999973 35
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ 374 (628)
++..+.+ |+|+++||++--.+ .+|++.| ||- .+ ..+.. -.+||--||--.
T Consensus 216 ~i~~~~i---k~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a-~~iTPVPGGVGp 265 (284)
T PRK14193 216 LVTADMV---KPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVA-GAVSPNPGGVGP 265 (284)
T ss_pred ccCHHHc---CCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhC-CEEeCCCCChhH
Confidence 7776655 89999999984432 3555543 554 11 11222 258999777643
No 206
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.03 E-value=0.00047 Score=61.33 Aligned_cols=87 Identities=25% Similarity=0.335 Sum_probs=60.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc--ccCHHHHhccCCEEEEcCCCCcccccccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFN 302 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~--~~sl~ell~~aDvV~l~~Plt~~t~~li~ 302 (628)
..++|+++.|||.|.+|..-++.|...|.+|.+++|.. . ..+..++ .-.+++.+..+|+|+.+++ ++ -+|
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~-~~~~~i~~~~~~~~~~l~~~~lV~~at~-d~----~~n 74 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--E-FSEGLIQLIRREFEEDLDGADLVFAATD-DP----ELN 74 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--H-HHHTSCEEEESS-GGGCTTESEEEE-SS--H----HHH
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--h-hhhhHHHHHhhhHHHHHhhheEEEecCC-CH----HHH
Confidence 36899999999999999999999999999999999875 1 1112222 2245677889999998775 22 245
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006864 303 DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 303 ~~~l~~mk~gailIN~a 319 (628)
+.....++.--+++|++
T Consensus 75 ~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 75 EAIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhhCCEEEEEC
Confidence 66666666666888875
No 207
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.00 E-value=0.0058 Score=67.99 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=73.0
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-C-------CC-CChhHH---------------HHcCCcccCHHH
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PY-APADKA---------------RAVGVELVSFDQ 279 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~-~~~~~a---------------~~~g~~~~sl~e 279 (628)
+.++.|+|+.|.|+|++|+.+|+.|..+|++|++. | |. .+.+.. ...+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45789999999999999999999999999999986 5 22 111100 001223345555
Q ss_pred Hhc-cCCEEEEcCCCCccccccccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 280 ALA-TADFISLHMPLNPTTSKIFNDETFAKMK--KGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 280 ll~-~aDvV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
++. +||+++-|.. .+.|+.+...+++ +-.+|+-.|-+.+ ..++ .+.|.+..|
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~A-~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPEA-IEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHHH-HHHHHHCCc
Confidence 555 6999988874 5677777766663 2346677777777 5554 455655544
No 208
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.0018 Score=53.47 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=51.8
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC-C---HHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-N---QDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~-~---~~~l~~L~~l~~v~~v 627 (628)
|.+...|+||.++.|.+.|+++++||..++..+. .++.+-+.+.++..- . ++++++|+++|+|.+|
T Consensus 3 l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v 72 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKV 72 (76)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 5677899999999999999999999999987542 345666666664322 2 3789999999999876
No 209
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.99 E-value=0.0035 Score=65.25 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=68.5
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHc---C-CcccCHHHH-hccCCEEEEcCCCC--ccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAV---G-VELVSFDQA-LATADFISLHMPLN--PTT 297 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~---g-~~~~sl~el-l~~aDvV~l~~Plt--~~t 297 (628)
..+|+++|+|.|.+|++++..|...|.+|.++|+.... +.+... + ....++++. +.++|+|+.++|.. ++.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46789999999999999999999999999999987422 112221 2 122345543 35899999999974 222
Q ss_pred cc-cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 SK-IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 ~~-li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.. .+. ...++++.+++|+.-... ++ .|.+..++
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~ 228 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKS 228 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHH
Confidence 11 122 345788889999876554 33 34444443
No 210
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.98 E-value=0.002 Score=67.56 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=65.6
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHc----CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG----LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|.. .++.|..++... .++.+.+++||+|+.+++ .
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~ 214 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----R 214 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----C
Confidence 46789999999999885 69999999998 789998876432 258889999999999995 3
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
.+++..+.+ |+|+++||++
T Consensus 215 p~li~~~~v---k~GavVIDVG 233 (286)
T PRK14184 215 PRFVTADMV---KPGAVVVDVG 233 (286)
T ss_pred CCcCCHHHc---CCCCEEEEee
Confidence 567887666 9999999998
No 211
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.98 E-value=0.0038 Score=66.34 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=73.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc---------C----Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------G----VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.+|..+|..+...|. +|+.+|........... . +.. .++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988775 89999986533222211 0 111 25666 79999999999842
Q ss_pred cccccc-------ccH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEEE--ee
Q 006864 295 PTTSKI-------FND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQAA--LD 344 (628)
Q Consensus 295 ~~t~~l-------i~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga~--lD 344 (628)
...++ .|. +.+....+++++|+++-.-=+....+.+. +...++.|.+ ||
T Consensus 81 -~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 -RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred -CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 22221 111 22334457889999976544445555555 4455676764 56
No 212
>PRK00194 hypothetical protein; Validated
Probab=96.98 E-value=0.00077 Score=58.16 Aligned_cols=64 Identities=22% Similarity=0.204 Sum_probs=47.0
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEE--eCC-CCCH-HHHHHHhcccC
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIG--VDE-EPNQ-DSLKEIGKVHF 623 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~--vD~-~~~~-~~l~~L~~l~~ 623 (628)
.+.+.+..+|+||+++.|++.|+++|+||.+++... .++...+.+. ++. +.+. ++.++|+++..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~ 70 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGK 70 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 356677889999999999999999999999999875 4567777444 443 2333 44466666543
No 213
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.97 E-value=0.018 Score=63.99 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=75.7
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE--------ECCCC-ChhHH--------------H----Hc-CCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKA--------------R----AV-GVELV 275 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a--------------~----~~-g~~~~ 275 (628)
|.++.|+|+.|=|+|++|+..|+.|..+|++|++ |||.- +.+.. . .. +.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5579999999999999999999999999999999 88763 32220 0 11 33444
Q ss_pred CHHHHhc-cCCEEEEcCCCCccccccccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 276 SFDQALA-TADFISLHMPLNPTTSKIFNDETFAKMK--KGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 276 sl~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+-++++. .||+++-|. +.+.|+.+...++. +-.+|+--|-+ .+..+|- +.|.+..|
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 5556554 599988766 67888888877772 23466666666 6666654 45555444
No 214
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.96 E-value=0.0024 Score=68.16 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=68.4
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l 306 (628)
.++||||+|+||+.+++.++.. ++++.+ +|+..........++. ..+.++++.+.|+|++|+|... . -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~t--h---~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSAT--D---IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCcc--C---HHHHH
Confidence 5899999999999999999765 799887 6876422222223332 2367788899999999998442 2 23344
Q ss_pred hcCCCCcEEEEcCCCc--hhc-HHHHHHHHhC-CCee
Q 006864 307 AKMKKGVRIVNVARGG--VID-EEALVRALDS-GVVA 339 (628)
Q Consensus 307 ~~mk~gailIN~aRg~--~vd-e~aL~~aL~~-g~i~ 339 (628)
..|+.|.=+|++.--. +-+ .+.|-++-++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 4567777788874321 112 3344455553 5553
No 215
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.95 E-value=0.0031 Score=66.92 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=64.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh--hHHHHc---CCc--ccCHHHHhccCCEEEEcCCCCcccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA--DKARAV---GVE--LVSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~---g~~--~~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
..++++|||.|.+|+..++.+.. ++ -+|.+||+.... ..+..+ ++. ..++++++.+||+|+.++|-+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46899999999999999999864 66 479999987522 122222 223 237899999999999999844 4
Q ss_pred ccccHHHHhcCCCCcEEEEcCCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aRg 321 (628)
.++.. .+|||+.|+.++.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 66654 36999999998753
No 216
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.94 E-value=0.0016 Score=62.62 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=55.3
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
|+|-+...|+||++++|+.+++++|+||..+.++.....+...|.+.++.. .-+.+.++|.++-+|.+|
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V 72 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKV 72 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEE
Confidence 577788899999999999999999999999999987656788887887662 222456777777777654
No 217
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.94 E-value=0.014 Score=58.97 Aligned_cols=106 Identities=28% Similarity=0.336 Sum_probs=68.9
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEE-ECCCC-------Ch-hH---HHHc-CCcc------cCHHHHh-ccC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYA-------PA-DK---ARAV-GVEL------VSFDQAL-ATA 284 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~-------~~-~~---a~~~-g~~~------~sl~ell-~~a 284 (628)
.++.|+++.|.|||++|+.+|+.|...|.+|++ .|... +. +. .++. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 468999999999999999999999999997766 45432 11 11 1111 1211 1224443 379
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
|+++-|.+ .+.|+.+....++ -.+++-.+.+.+-+ ++ .+.|++..+
T Consensus 99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~-~a-~~~L~~~Gi 144 (217)
T cd05211 99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD-EA-LRILHERGI 144 (217)
T ss_pred cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 99999886 4577888887776 44666667777655 44 444544433
No 218
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.93 E-value=0.0022 Score=66.76 Aligned_cols=113 Identities=19% Similarity=0.309 Sum_probs=81.7
Q ss_pred cceeeecCCeEEEEecChh-HHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccc
Q 006864 222 YVGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (628)
Q Consensus 222 ~~g~~l~GktiGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~l 300 (628)
+.+.+++||++.|||-++| |+.+|..|...++.|.+.+... -++.+..++||+|+.++- -.++
T Consensus 149 ~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG----~p~~ 212 (283)
T COG0190 149 EYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVG----KPHF 212 (283)
T ss_pred HhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecC----Cccc
Confidence 3467999999999999975 9999999999999999987653 257788899999999885 3466
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006864 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ 374 (628)
+..+. .|+|+++||++--. ++++++.| ||--.+ ...-.-.+||--||--.
T Consensus 213 i~~d~---vk~gavVIDVGinr----------v~~~kl~G---DVdf~~--------v~~~a~~iTPVPGGVGP 262 (283)
T COG0190 213 IKADM---VKPGAVVIDVGINR----------VNDGKLVG---DVDFDS--------VKEKASAITPVPGGVGP 262 (283)
T ss_pred ccccc---ccCCCEEEecCCcc----------ccCCceEe---eccHHH--------HHHhhcccCCCCCccCH
Confidence 66543 59999999998433 33366644 442222 11123357888877644
No 219
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.91 E-value=0.0017 Score=62.70 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=56.2
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC--CCCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~--~~~~~~l~~L~~l~~v~~v 627 (628)
|+|-+...|+||++++|+.+++++|+||..+.++.....+...+.+.++. ..=+.+.++|.++.+|.+|
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V 73 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKV 73 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEE
Confidence 67778889999999999999999999999999998765677777777764 3233677778888887765
No 220
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.91 E-value=0.0031 Score=66.34 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=64.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... -+|.+.+++||+|+.+++.
T Consensus 151 ~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk---- 214 (293)
T PRK14185 151 YHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ---- 214 (293)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999885 699999999876 68898876432 2578889999999999973
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
.+++..+. .|+|+++||++-
T Consensus 215 p~~i~~~~---vk~gavVIDvGi 234 (293)
T PRK14185 215 PEFVKADM---VKEGAVVIDVGT 234 (293)
T ss_pred cCccCHHH---cCCCCEEEEecC
Confidence 45677654 589999999984
No 221
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.90 E-value=0.0026 Score=67.07 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=64.6
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHc----CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG----LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|.. .+..|....... .++.+.+++||+|+.+++..
T Consensus 153 y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~--- 217 (295)
T PRK14174 153 YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA--- 217 (295)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc---
Confidence 46789999999999885 69999999976 578888766432 24788899999999999632
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
+++..+.+ |+|+++||++-
T Consensus 218 -~li~~~~v---k~GavVIDVgi 236 (295)
T PRK14174 218 -RFITADMV---KPGAVVIDVGI 236 (295)
T ss_pred -CccCHHHc---CCCCEEEEeec
Confidence 67888777 99999999983
No 222
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.88 E-value=0.0031 Score=51.96 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=49.4
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC--C-CCCHHHHHHHhcccCcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--E-EPNQDSLKEIGKVHFVA 625 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD--~-~~~~~~l~~L~~l~~v~ 625 (628)
|.+...|+||.++.|++.+++.|+||..++..+.. .+.+.+.+.+. . +--..++++|+++|+|.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~ 68 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVK 68 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeE
Confidence 45677899999999999999999999999986643 46665554443 2 22237899999999875
No 223
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.84 E-value=0.0038 Score=65.83 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=64.0
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... -+|.+..++||+|+.++- -
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvG----k 214 (297)
T PRK14167 151 AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAG----V 214 (297)
T ss_pred hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccC----C
Confidence 46789999999999875 699999999865 78998876432 257888999999999886 2
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
.+++..+. .|+|+++||++-
T Consensus 215 p~~i~~~~---ik~gaiVIDvGi 234 (297)
T PRK14167 215 PELIDGSM---LSEGATVIDVGI 234 (297)
T ss_pred cCccCHHH---cCCCCEEEEccc
Confidence 45777654 489999999983
No 224
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.80 E-value=0.0025 Score=71.79 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=51.8
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCCcccCHHHH--hccCCEEEEcCCCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQA--LATADFISLHMPLN 294 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~sl~el--l~~aDvV~l~~Plt 294 (628)
..+.|++++|+|.|.+|++++..|...|++|.++|+.... ..+...+....+++++ +.++|+|+.|+|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 4577899999999999999999999999999999886422 1122223233334433 57899999999965
No 225
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.80 E-value=0.0041 Score=65.65 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=65.2
Q ss_pred ceeeecCCeEEEEecCh-hHHHHHHHHHcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccc
Q 006864 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... -++.+.+++||+|+.++. .
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvG----k 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAG----V 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecC----C
Confidence 47799999999999875 699999999876 78898875432 257888999999999986 2
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCc
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
.+++..+.+ |+|+++||++--.
T Consensus 219 p~~i~~~~i---k~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEWI---KPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHHc---CCCCEEEecCCCc
Confidence 456776655 8999999998443
No 226
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.79 E-value=0.004 Score=68.90 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=61.9
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCCh--hHHHHcC-Cccc---CHHHHhccCCEEEEcCCCCcccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG-VELV---SFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g-~~~~---sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
.+.|+++.|||.|.+|+.+++.|...|. ++++++|.... ..+...+ .... ++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4789999999999999999999999995 79999987522 2233333 3333 4567789999999998743 4
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
.+|..+.+. .+.-++||.|
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 556654432 1223555554
No 227
>PLN02477 glutamate dehydrogenase
Probab=96.79 E-value=0.045 Score=60.46 Aligned_cols=107 Identities=29% Similarity=0.329 Sum_probs=72.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEE-CCC-------C-ChhHHHH----c-------CCcccCHHHHh-c
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DPY-------A-PADKARA----V-------GVELVSFDQAL-A 282 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~-------~-~~~~a~~----~-------g~~~~sl~ell-~ 282 (628)
|.++.|+++.|.|+|++|+.+|+.|...|++|++. |.+ - +.+...+ . +.+.++.++++ .
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 55789999999999999999999999999999953 432 1 2211111 0 11223444443 3
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.||+++-|. ..+.|+++...+++ -.+|+-.|-+.+ ..++ -+.|++..|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~ea-~~~L~~rGI 328 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPEA-DEILRKKGV 328 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHHH-HHHHHHCCc
Confidence 789888765 46678888888875 457777788887 4444 466666554
No 228
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.78 E-value=0.0059 Score=65.28 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=70.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCChhHHHHc---------CC----cc-cCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAV---------GV----EL-VSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~---------g~----~~-~sl~ell~~aDvV~l~~ 291 (628)
+..++|+|||.|.+|..+|..+...| .++..||..........+ +. .. .+++ .++.||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35679999999999999999998777 689999986532111111 11 11 2455 779999999999
Q ss_pred --CCCcc-cc--------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh--CCCeeEEE
Q 006864 292 --PLNPT-TS--------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALD--SGVVAQAA 342 (628)
Q Consensus 292 --Plt~~-t~--------~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~--~g~i~ga~ 342 (628)
|-.+. ++ .++. .+.+....|.+++|+++-.-=+....+.+.-. ..++.|.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 54331 11 1110 12334456788888886544334444444332 34666655
No 229
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.78 E-value=0.012 Score=69.56 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=80.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVG-------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|..||+.... +++ .+.| ++. .++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999987421 110 1111 111 145 45799
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
||+|+=++|-..+.+.-+-.+.=+.++++++|....++ +.-..|.+.++. .++ .++..|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~--~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRPENF--CGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccE--EEEecCC
Confidence 99999999988888877777777779999988765544 444556666654 355 5556553
No 230
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.76 E-value=0.0045 Score=68.03 Aligned_cols=92 Identities=27% Similarity=0.377 Sum_probs=67.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCC-CEEEEECCCCCh--hHHHHcCCcccC---HHHHhccCCEEEEcCCCCccccc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGVELVS---FDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g~~~~s---l~ell~~aDvV~l~~Plt~~t~~ 299 (628)
.|.++++.|||.|.||.-+|+.|.+.| .+|+..+|.... +.+.++|...+. +.+.+.++|+|+.++- ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 389999999999999999999999999 578888887532 346777866664 5567899999999863 3355
Q ss_pred cccHHHHhcC---CCCcEEEEcCC
Q 006864 300 IFNDETFAKM---KKGVRIVNVAR 320 (628)
Q Consensus 300 li~~~~l~~m---k~gailIN~aR 320 (628)
++..+.+... ++.-++||.|=
T Consensus 252 ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecC
Confidence 6665554432 11246777653
No 231
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.029 Score=60.74 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=115.0
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcC----C-cccCHHHH---hccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----V-ELVSFDQA---LATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----~-~~~sl~el---l~~aDvV~l~~Plt~~t~~ 299 (628)
..||+||||.||+.+|......|++|.+|+|.... +..++.+ + ...+++|+ ++.-.-|.+.+---.-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999998632 2222222 1 22366665 4566777777643211122
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~ 379 (628)
. -++.+..|.+|=++||-+...--|...-.++|.+..|...|.-|.+.|--+-.. |-+ +=+-+.|+++.
T Consensus 84 ~-I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G-----PSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 V-IEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG-----PSI-----MPGGQKEAYEL 152 (473)
T ss_pred H-HHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC-----CCc-----CCCCCHHHHHH
Confidence 2 356778899999999999988899999999999998888899999988432112 222 33678899988
Q ss_pred HHHHHHHHHHHHHcCCCCCCcc
Q 006864 380 VAIEIAEAVVGALRGELSATAI 401 (628)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~v 401 (628)
+. -+.+.|.+-..|++...-|
T Consensus 153 v~-pil~~IaAk~~g~pCc~~i 173 (473)
T COG0362 153 VA-PILTKIAAKVDGEPCCTWI 173 (473)
T ss_pred HH-HHHHHHHhhcCCCCceeeE
Confidence 75 4667777777777765444
No 232
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.71 E-value=0.015 Score=68.81 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=80.3
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVG-------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|..||+.... ++. .+.| +.. .++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 68999999999999999999999999999986421 110 0111 111 134 45799
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
||+|+=++|-.-+.+.-+-++.=+.++++++|-...++ ++-..|...++. .++ .++..|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~--ig~Hff~ 453 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKRPENF--CGMHFFN 453 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCcccE--EEEecCC
Confidence 99999999988887777767776779999988765544 445556666654 355 5555554
No 233
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.70 E-value=0.0021 Score=62.70 Aligned_cols=69 Identities=12% Similarity=0.267 Sum_probs=55.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC--CCHHHHHHHhcccCcccc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~--~~~~~l~~L~~l~~v~~v 627 (628)
|.+-+.-.|+||++.+|+++|.+.|+||.++.++.....+.+-|.+.+... .-+.+.++|.++-++.+|
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V 73 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKV 73 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEE
Confidence 567778899999999999999999999999999887777777777777653 334677777777666554
No 234
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.63 E-value=0.0045 Score=62.05 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=63.6
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH--HHHc-CCccc--C-HHHHhccCCEEEEcCCCCcccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV-GVELV--S-FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~-g~~~~--s-l~ell~~aDvV~l~~Plt~~t~ 298 (628)
.++.||++.|||.|.+|..-++.|..+|++|.+++|....+. ..+. .+++. + -.+.+..+|+|+.+... +
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d-~--- 80 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDD-E--- 80 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCC-H---
Confidence 578999999999999999999999999999999999765332 1122 23321 1 13456788998877542 2
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
-+|.......+.-.++||+.
T Consensus 81 -~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 81 -ELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred -HHHHHHHHHHHHcCCEEEEC
Confidence 13556666666666788864
No 235
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.63 E-value=0.0063 Score=65.70 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=61.9
Q ss_pred eEEEEecChhHHHHHHHHHcCC--------CEEEEECCCC---ChhHHHH-----------cCCc------c-cCHHHHh
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG--------MNVIAHDPYA---PADKARA-----------VGVE------L-VSFDQAL 281 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~---~~~~a~~-----------~g~~------~-~sl~ell 281 (628)
+|+|||.|..|.++|..|...| .+|..|.+.. ....... .|++ . .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998766 9999997621 1111100 0221 1 3789999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 321 (628)
+.||+|++++|-. ..+.++ .+.-..++++..+|+++-|
T Consensus 81 ~~ADiIIlAVPs~-~i~~vl-~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGIC-KQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECChH-HHHHHH-HHHHhhcCCCCEEEEEeCC
Confidence 9999999999932 233332 3333457889999999876
No 236
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.63 E-value=0.0041 Score=55.85 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=48.8
Q ss_pred eEEEEecChhHHHHHHHHHcC--CCEEE-EECCCCCh--hHHHHcCCcc-cCHHHHhc--cCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~g~~~-~sl~ell~--~aDvV~l~~Pl 293 (628)
++||||+|.+|+.....++.. ++++. ++|+.... ..++..++.. .+++++++ +.|+|++++|-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 689999999999999888766 56766 47887522 2235567764 48999998 79999999994
No 237
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.60 E-value=0.0051 Score=51.06 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=39.2
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~ 609 (628)
+.+.-+|+||++++|++.|+++|+||.+++......++.-.|.++++-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4566799999999999999999999999998865455555566666654
No 238
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.60 E-value=0.0066 Score=50.94 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeee----cCccEEEEEEeCCCCC---HHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF----RRNHGIMAIGVDEEPN---QDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~----~gg~Al~~i~vD~~~~---~~~l~~L~~l 621 (628)
+.+.-+|+||++++|++.|+++|+||.+++..... ..+.-.|.+.++-+.. .++.+.|+.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999999999997654 2345566667765432 2444445443
No 239
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.60 E-value=0.0095 Score=63.85 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=61.9
Q ss_pred CCeEEEEecChhHHHHHHHHH-cCCC-EEEEECCCCCh--hHHHH----cCCcc---cCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKARA----VGVEL---VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~g~~~---~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.++++|||.|.+|+..++.+. .++. +|.+|+++... ..+.. .+++. .++++.+.+||+|+.++|..
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--- 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--- 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence 579999999999999999997 4774 69999987532 12222 24432 36899999999999999854
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
..++..+. +|+|+.+..++
T Consensus 206 ~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred CcEecHHH---cCCCcEEEeeC
Confidence 35665543 68888776554
No 240
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.58 E-value=0.0061 Score=60.95 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=60.1
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH--HHcC-Cccc--CH-HHHhccCCEEEEcCCCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--RAVG-VELV--SF-DQALATADFISLHMPLNPTT 297 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g-~~~~--sl-~ell~~aDvV~l~~Plt~~t 297 (628)
..++.||++.|||.|.+|...++.|...|.+|.+++|....+.. ...+ +... .+ ++.+..+|+|+.++.-. +.
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~-el 83 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP-RV 83 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH-HH
Confidence 45899999999999999999999999999999999987543321 1112 2221 12 34578899888877632 22
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
|......++.+ +++|++
T Consensus 84 ----N~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 84 ----NEQVKEDLPEN-ALFNVI 100 (202)
T ss_pred ----HHHHHHHHHhC-CcEEEC
Confidence 33333334444 467764
No 241
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.58 E-value=0.017 Score=68.42 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=80.8
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA-----------RAVG-------------VEL-VSFDQALAT 283 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~sl~ell~~ 283 (628)
++|+|||.|.||..+|..+...|++|+.||+.... ++. .+.| +.. .+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 68999999999999999999999999999976421 110 0111 111 2454 5799
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
||+|+=++|-+.+.+.-+-++.=+.++++++|....+ -++-..|...++. .++ .++..|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~p~r~--ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSRPEKV--IGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCCccce--EEEeccC
Confidence 9999999998888887777777777999998865433 3555566676654 355 6666664
No 242
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.57 E-value=0.0061 Score=65.01 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=60.3
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHc--------CC------cc-cCHHHHh-ccCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------GV------EL-VSFDQAL-ATADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~--------g~------~~-~sl~ell-~~aDvV~l~~Pl 293 (628)
+|+|||.|.+|..+|..|...|.+|..|+++.. .+...+. +. .. .++++.+ ..+|+|++++|-
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 699999999999999999999999999998642 1111110 11 11 2566666 589999999993
Q ss_pred CccccccccHHHHh-cCCCCcEEEEcCCCc
Q 006864 294 NPTTSKIFNDETFA-KMKKGVRIVNVARGG 322 (628)
Q Consensus 294 t~~t~~li~~~~l~-~mk~gailIN~aRg~ 322 (628)
. ++...+. +... .++++..+|.+.-|=
T Consensus 82 ~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 Q-QLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred H-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 2 3443332 2223 566777777776653
No 243
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.57 E-value=0.0045 Score=52.10 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=36.9
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
|.+.-+|+||++++|++.|+++|.||-+++... .++.-.|++.++-
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~ 49 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEG 49 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEe
Confidence 445679999999999999999999999999987 4455556555553
No 244
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.56 E-value=0.0095 Score=63.82 Aligned_cols=87 Identities=25% Similarity=0.239 Sum_probs=63.1
Q ss_pred cCCeEEEEecChhHHHHHHHHH-cCCC-EEEEECCCCCh--hHHH----HcCCc---ccCHHHHhccCCEEEEcCCCCcc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKAR----AVGVE---LVSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~----~~g~~---~~sl~ell~~aDvV~l~~Plt~~ 296 (628)
..++++|||.|.+|+..++.+. ..+. +|.+||+.... +.+. ..+++ ..++++++++||+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 3689999999999999887764 4564 78889987522 1122 22443 237899999999999999844
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg 321 (628)
..++. +.+|+|+.++.++.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34553 456999999988753
No 245
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.54 E-value=0.0076 Score=64.66 Aligned_cols=64 Identities=30% Similarity=0.385 Sum_probs=47.2
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-C------HHHHhccCCEEEEcCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-S------FDQALATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-s------l~ell~~aDvV~l~~P 292 (628)
|++++|+|+|-.|..-.+.++++|++|+++|+... .+.++++|...+ + ++.+-+.+|+++.++|
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 88999999999999999999999999999999863 455677775321 1 1222223666666665
No 246
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.53 E-value=0.021 Score=67.61 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=80.2
Q ss_pred CeEEEEecChhHHHHHHHHH-cCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhc
Q 006864 230 KTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAPA-DKA-----------RAVG-------------VEL-VSFDQALA 282 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~sl~ell~ 282 (628)
++|+|||.|.||..+|..+. ..|++|..||+.... +++ .+.| +.. .++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 779999999986421 111 0111 111 134 4679
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
.||+|+=++|-+.+.+.-+-++.=+.++|+++|....++ +.-..|.+.+.. .++ +++..|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQV--IGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccce--EEEecCC
Confidence 999999999988888877767776779999999766544 444556666643 355 5666553
No 247
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.52 E-value=0.0066 Score=49.35 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=46.0
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC-CCHHHHHHHhc
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGK 620 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~-~~~~~l~~L~~ 620 (628)
+.+-+..+|+||.+++++.+|+++|+||..+...+...+..+.+.+.++.+ ..+.+++.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 456677899999999999999999999999988775433356666777532 23466666665
No 248
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.52 E-value=0.0054 Score=55.80 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=54.2
Q ss_pred eEEEEe-cChhHHHHHHHHHcC-CCEEEEE-CCCC-ChhHHHHcC--Cc-----ccCHHHH-hccCCEEEEcCCCCcccc
Q 006864 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIAH-DPYA-PADKARAVG--VE-----LVSFDQA-LATADFISLHMPLNPTTS 298 (628)
Q Consensus 231 tiGIIG-lG~IG~~vA~~l~~~-G~~V~~~-d~~~-~~~~a~~~g--~~-----~~sl~el-l~~aDvV~l~~Plt~~t~ 298 (628)
++||+| .|.+|+.+++.++.. ++++.+. ++.. ........+ +. ..+.+++ ..++|+|++|+|-.. +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 589999 599999999999874 7787766 4221 111111111 11 1121222 258999999999543 23
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
..+. .....+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 2221 23455799999999973
No 249
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.52 E-value=0.011 Score=61.32 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=63.0
Q ss_pred CeEEEEecChhHHHHHHHHHcC---CCEEEE-ECCCCChhHHHHcCCccc-CHHHH-hccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL---GMNVIA-HDPYAPADKARAVGVELV-SFDQA-LATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~~~~a~~~g~~~~-sl~el-l~~aDvV~l~~Plt~~t~~li~~ 303 (628)
++|||||+|.||+.+++.+..- ++++.+ ||+...........+..+ +++++ ..+.|+|+=|.. ++.. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~--~~av---~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAG--QQAI---AE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCC--HHHH---HH
Confidence 6899999999999999998753 355544 565432211111124444 69997 578999998886 2222 22
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDE---EALVRALDS 335 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde---~aL~~aL~~ 335 (628)
--..-|+.|.-++=.+=|.+.|. +.|.++.+.
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 22233566777777777888874 344444443
No 250
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.51 E-value=0.0048 Score=61.62 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=64.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC---C-hhH----HHHcC-----------------Ccc----
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA---P-ADK----ARAVG-----------------VEL---- 274 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---~-~~~----a~~~g-----------------~~~---- 274 (628)
..|..++|+|+|+|.+|..+|..|...|. ++..+|+.. + ..+ ..+.| ++.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35788999999999999999999999998 699998751 0 000 01111 110
Q ss_pred -----cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEE
Q 006864 275 -----VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 275 -----~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN 317 (628)
.+++++++++|+|+-+ .-+.+++.++.......++...++..
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 0245677888888887 45777888888887777776665553
No 251
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.49 E-value=0.022 Score=67.24 Aligned_cols=113 Identities=12% Similarity=0.147 Sum_probs=79.1
Q ss_pred CeEEEEecChhHHHHHHHHH-cCCCEEEEECCCCCh-hHH-----------HHcC-------------Cccc-CHHHHhc
Q 006864 230 KTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAPA-DKA-----------RAVG-------------VELV-SFDQALA 282 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------~~~~-sl~ell~ 282 (628)
++|+|||.|.||..+|..+. ..|++|..||+.... +.+ .+.+ +... ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999987 589999999987421 110 0111 1122 45 4679
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeEEEeeccC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~ga~lDV~~ 347 (628)
.||+|+=++|-..+.+.-+-.+.=+.++++++|....++ +.-..|.++++. .++ .++..|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~--~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENV--IGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccE--EEEecCC
Confidence 999999999988888877767777778999888765544 344455666644 356 5556553
No 252
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.44 E-value=0.0031 Score=59.25 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=72.0
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc--------------C-HHHHhccCCEEEEcCCCCcc
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--------------S-FDQALATADFISLHMPLNPT 296 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~--------------s-l~ell~~aDvV~l~~Plt~~ 296 (628)
|.|+|.|.||.-+|.+|+..|.+|..+++....+..++.|+... + ..+....+|+|++++.-. +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 68999999999999999999999999987652233344454221 1 124678899999998733 3
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEE
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA 342 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~ 342 (628)
+...+.. .-..+++++.++-.--| +-.++.+.+.+...++.++.
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 4444433 44446667677766544 56677777777566665543
No 253
>PRK06046 alanine dehydrogenase; Validated
Probab=96.41 E-value=0.013 Score=62.96 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=61.0
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-hH-HHH----cCC--c-ccCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-DK-ARA----VGV--E-LVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~~-a~~----~g~--~-~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
-+++||||.|.+|+..++.+.. .+. +|.+||+.... +. +.. .++ . ..+++++++ +|+|++++|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 3789999999999999998874 454 56778988532 11 222 243 2 237899987 99999999854
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
..++..+. +|+|+.|..++.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 46666654 589998888874
No 254
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.41 E-value=0.012 Score=62.00 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=50.8
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcC-----Cccc---CHHHHhccCCEEEEcCCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVG-----VELV---SFDQALATADFISLHMPLN 294 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g-----~~~~---sl~ell~~aDvV~l~~Plt 294 (628)
.+.+|++.|||.|..|++++..|...|+ +|..+|+..... .+..++ .... ++.+.++++|+|+.++|.-
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 3567999999999999999999999997 799999875221 122211 1111 3455778899999999854
No 255
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.39 E-value=0.0082 Score=50.10 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=33.8
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
+-+.-+|+||+++.|+..|+++|+||.+++..... +.-.|.+.++-
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~ 47 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQI 47 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEc
Confidence 34567999999999999999999999999754432 33344444443
No 256
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=96.39 E-value=0.0065 Score=57.81 Aligned_cols=64 Identities=14% Similarity=0.275 Sum_probs=55.5
Q ss_pred eccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhcccCcccc
Q 006864 564 RQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 564 ~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~l~~v~~v 627 (628)
.-.+.||+++.|.++++++||+|-.....--+-.+++...+=+++++|.+++.+|+++++|.++
T Consensus 101 ~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i 164 (167)
T COG2150 101 EDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKI 164 (167)
T ss_pred ccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhcccCceeE
Confidence 3567899999999999999999988766544456788888888999999999999999999875
No 257
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.38 E-value=0.0067 Score=65.38 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=60.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc---------CC------cc-cCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV---------GV------EL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---------g~------~~-~sl~ell~~aDvV~l~~P 292 (628)
++|+|||.|.+|..+|..|...| +|..|.++... +...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 57777654211 111111 11 11 267788999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006864 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 293 lt~~t~~li~~~~l~~mk~gailIN~aRg~ 322 (628)
. ..++..+ ++.-..++++..+|++.-|=
T Consensus 87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 S-HGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 3 2344333 23334578888899988753
No 258
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.0074 Score=49.75 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=43.9
Q ss_pred EEeccCCCCchhhHHhhhhcCCccccceEEeeee-cCccEEEEEEeCCCCC---HHHHHHHhcc
Q 006864 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDEEPN---QDSLKEIGKV 621 (628)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~-~gg~Al~~i~vD~~~~---~~~l~~L~~l 621 (628)
-+..+|+||.++.++++|+++|+||-.+...|.. ..+.....+.++-+.+ ++++++|++.
T Consensus 3 ~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~ 66 (72)
T cd04884 3 TFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAK 66 (72)
T ss_pred EEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCc
Confidence 3567899999999999999999999999888752 3344455666554444 3666666554
No 259
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.37 E-value=0.012 Score=64.12 Aligned_cols=90 Identities=18% Similarity=0.302 Sum_probs=60.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-------CEEEEECCCCC------hhHHHH--------cCCc-------ccCHHHHh
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-------MNVIAHDPYAP------ADKARA--------VGVE-------LVSFDQAL 281 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~------~~~a~~--------~g~~-------~~sl~ell 281 (628)
++|+|||.|..|.++|..|..-| .+|..|.+... .+...+ .|++ ..++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999997554 78888865532 111111 0121 12688999
Q ss_pred ccCCEEEEcCCCCccccccccHHHHh--cCCCCcEEEEcCCC
Q 006864 282 ATADFISLHMPLNPTTSKIFNDETFA--KMKKGVRIVNVARG 321 (628)
Q Consensus 282 ~~aDvV~l~~Plt~~t~~li~~~~l~--~mk~gailIN~aRg 321 (628)
+.||+|++++|-. ..+..+ ++.-. .+++++++|+++-|
T Consensus 92 ~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKG 131 (365)
T PTZ00345 92 EDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKG 131 (365)
T ss_pred hcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCC
Confidence 9999999999932 233332 22222 45667899998765
No 260
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.012 Score=62.06 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=58.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC--ChhHHHHcCCccc--C------HHHHhccCCEEEEcCCCCccc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELV--S------FDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~g~~~~--s------l~ell~~aDvV~l~~Plt~~t 297 (628)
-|+.+||+|+|-+|.--.+.+++|||+|+++|... .++..+.+|.+.. + .+++...-|.++-+++.- .
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence 79999999999999988899999999999999875 3344455776521 1 344555566665555422 1
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
.+-+ +..+..||++..+|-++
T Consensus 259 ~~~~-~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 259 EHAL-EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred ccch-HHHHHHhhcCCEEEEEe
Confidence 2222 33455566666655553
No 261
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.36 E-value=0.0074 Score=48.55 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=44.5
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeee---cCccEEEEEEeCCCCCH---HHHHHHhc
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF---RRNHGIMAIGVDEEPNQ---DSLKEIGK 620 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~---~gg~Al~~i~vD~~~~~---~~l~~L~~ 620 (628)
+..+|+||.++.|++.++++++||..+...+.. ..+.+.+.+.++-.-.+ +++++|++
T Consensus 3 v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 3 VELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 556899999999999999999999999987643 25677777777654333 66666665
No 262
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.35 E-value=0.085 Score=56.06 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=64.5
Q ss_pred eecCCeEEEEecC---hhHHHHHHHHHcCCCEEEEECCCC---Chh---HHHHcCCcc---cCHHHHhccCCEEEEcCCC
Q 006864 226 SLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPYA---PAD---KARAVGVEL---VSFDQALATADFISLHMPL 293 (628)
Q Consensus 226 ~l~GktiGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~a~~~g~~~---~sl~ell~~aDvV~l~~Pl 293 (628)
.+.|++|+++|-| ++..+++..+..|||+|....|.. +.+ .+++.|... .++++.++.||+|..-- .
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~ 225 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-I 225 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-c
Confidence 3789999999995 999999999999999999988753 222 233445432 38999999999998732 1
Q ss_pred Ccc------------ccccccHHHHhcCCCCcEEEEcC
Q 006864 294 NPT------------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 294 t~~------------t~~li~~~~l~~mk~gailIN~a 319 (628)
..+ ...-++++.++.+|++++|.-|.
T Consensus 226 ~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 226 QKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred cccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 111 02234556666666666666553
No 263
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.34 E-value=0.016 Score=63.24 Aligned_cols=108 Identities=25% Similarity=0.373 Sum_probs=76.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC---------h-----------hHHHHcCCcccCHHHHhc-
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP---------A-----------DKARAVGVELVSFDQALA- 282 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---------~-----------~~a~~~g~~~~sl~ell~- 282 (628)
+..+.|+|+.|=|+|++|+..|+.|...|.+|++.|.+.. . ......+.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4459999999999999999999999999999998754322 0 111222445555577776
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
.||+.+=|. +.+.|+.+...++|.. +|+--|.|.+-.+. --..++.|.+
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t~eA-~~i~~erGIl 330 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTTPEA-DEILLERGIL 330 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCCHHH-HHHHHHCCCE
Confidence 699886654 6788888888888876 88888888776433 3333355655
No 264
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.33 E-value=0.058 Score=58.13 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=64.8
Q ss_pred eecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC--Chh--------HHHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
.+.|++|++||-+ ++..+++..+..||++|.+..|.. +.+ .++..|.. . .++++.+++||+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 678888999999999999988753 221 12234533 2 4899999999999873
Q ss_pred C----CCCcc---------ccccccHHHHhcC-CCCcEEEEcC
Q 006864 291 M----PLNPT---------TSKIFNDETFAKM-KKGVRIVNVA 319 (628)
Q Consensus 291 ~----Plt~~---------t~~li~~~~l~~m-k~gailIN~a 319 (628)
. ....+ ....++++.++++ |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 10000 1233567777765 6778887774
No 265
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=96.31 E-value=0.022 Score=51.55 Aligned_cols=114 Identities=15% Similarity=0.293 Sum_probs=74.6
Q ss_pred ccccchHhHHhhcCceEEEEEeecCCCCCCCCceEEEEEEecccccceeeCCCcEEEEEEEEECCeeEEEEECceeEEee
Q 006864 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDAS 555 (628)
Q Consensus 476 vnlvNA~~iAke~GI~i~~~~~~~~~~~~~~~ntv~v~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~~I~~Idgf~Vd~~ 555 (628)
-++.++....++.||+++--...+.+ .| .-+++.+. ++..+-. ..+=-||-|..
T Consensus 15 GRL~~~~~~L~eagINiRA~tiAdt~---dF-GIiRmvV~--~~d~A~~-------------------~Lee~gF~Vr~- 68 (142)
T COG4747 15 GRLASVANKLKEAGINIRAFTIADTG---DF-GIIRMVVD--RPDEAHS-------------------VLEEAGFTVRE- 68 (142)
T ss_pred chHHHHHHHHHHcCCceEEEEecccc---Cc-ceEEEEcC--ChHHHHH-------------------HHHHCCcEEEe-
Confidence 47888899999999999865433221 34 34444443 1111111 01112344433
Q ss_pred cCCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCCHHHHHHHhc
Q 006864 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (628)
Q Consensus 556 ~~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~~~~l~~L~~ 620 (628)
...|-+...|+||-+.+|..+|++++||+.++--+-.++ ..|+.++.+++- ++.++.|++
T Consensus 69 --~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~--d~~~~aLed 128 (142)
T COG4747 69 --TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDI--DRAIKALED 128 (142)
T ss_pred --eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHH--HHHHHHHHH
Confidence 245677889999999999999999999999998876666 899999998753 334444443
No 266
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.022 Score=63.76 Aligned_cols=108 Identities=23% Similarity=0.259 Sum_probs=71.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh------hHHHHcCCccc---CHHHHhccCCEEEEcCCCCccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV---SFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t 297 (628)
+.||+++|+|+|..|.++|+.|+..|++|.++|..... ......|+... ...+.+.++|+|+.. |--+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 56899999999999999999999999999999976421 12344566543 234556889999886 533332
Q ss_pred ccc-----------ccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 SKI-----------FNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 ~~l-----------i~~~-~l~~-mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
... +++- .+.+ .+.-.+-|-=+.|+.--.+-+...|+.
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 222 2221 2222 233345555577888888877787764
No 267
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.28 E-value=0.014 Score=62.87 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=58.8
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
.+.||++.|||.|.||+-+|+.|...|. +|++.+|........... ...-+.+.++|+|+.+.--|......+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~---~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVV---REELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhh---hhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 4889999999999999999999999995 688888875211111000 011144578999998732233334455655
Q ss_pred HHhcCCCCcEEEEcC
Q 006864 305 TFAKMKKGVRIVNVA 319 (628)
Q Consensus 305 ~l~~mk~gailIN~a 319 (628)
.++..++ -++||.|
T Consensus 248 ~~~~~~~-r~~iDLA 261 (338)
T PRK00676 248 SLADIPD-RIVFDFN 261 (338)
T ss_pred HHhhccC-cEEEEec
Confidence 5554332 3777765
No 268
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.28 E-value=0.061 Score=57.24 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=80.0
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHc
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKG 250 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~ 250 (628)
+...+|+|+|+-+....++- +++=++.+.++ .| .+.|++|+++|- +++.++++..+..
T Consensus 116 a~~~~vPVINag~~~~HPtQ--aL~Dl~Ti~e~------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~ 174 (304)
T PRK00779 116 AEYSTVPVINGLTDLSHPCQ--ILADLLTIYEH------------------RG-SLKGLKVAWVGDGNNVANSLLLAAAL 174 (304)
T ss_pred HHhCCCCEEeCCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCcEEEEEeCCCccHHHHHHHHHH
Confidence 44567999999765433332 22222333221 12 367899999998 7899999999999
Q ss_pred CCCEEEEECCCC--C-hhH----HHHcCCc--c-cCHHHHhccCCEEEEcC----CCCc---c-----ccccccHHHHhc
Q 006864 251 LGMNVIAHDPYA--P-ADK----ARAVGVE--L-VSFDQALATADFISLHM----PLNP---T-----TSKIFNDETFAK 308 (628)
Q Consensus 251 ~G~~V~~~d~~~--~-~~~----a~~~g~~--~-~sl~ell~~aDvV~l~~----Plt~---~-----t~~li~~~~l~~ 308 (628)
+|++|....|.. . .+. ++..|.. . .++++.++.||+|..-. .... + -..-++++.++.
T Consensus 175 ~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~ 254 (304)
T PRK00779 175 LGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMAL 254 (304)
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHh
Confidence 999999988753 2 121 2334533 2 38999999999998742 1000 0 123345666666
Q ss_pred CCCCcEEEEcC
Q 006864 309 MKKGVRIVNVA 319 (628)
Q Consensus 309 mk~gailIN~a 319 (628)
+|++++|.-|.
T Consensus 255 ~~~~~ivmHpl 265 (304)
T PRK00779 255 AKPDAIFMHCL 265 (304)
T ss_pred cCCCeEEecCC
Confidence 66666666653
No 269
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.27 E-value=0.0087 Score=63.77 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=75.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhH-HHH-------c-CC------c-ccCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARA-------V-GV------E-LVSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~-------~-g~------~-~~sl~ell~~aDvV~l~~Pl 293 (628)
++|.|||.|.-|.++|+.|...|.+|..|.+...... ... + |+ . ..++.++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 5899999999999999999999999998876421100 000 0 11 1 23799999999999999993
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCchhc-----HHHHHHHHhCCCeeE-----EEeeccCCCC
Q 006864 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVID-----EEALVRALDSGVVAQ-----AALDVFTEEP 350 (628)
Q Consensus 294 t~~t~~li~~~~l~~mk~gailIN~aRg~~vd-----e~aL~~aL~~g~i~g-----a~lDV~~~EP 350 (628)
. -.+..+. +.-..+++++.+|+|+-|=-.+ .+.+.+.|....++. .+-+|...-|
T Consensus 82 ~-~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~p 146 (329)
T COG0240 82 Q-ALREVLR-QLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLP 146 (329)
T ss_pred H-HHHHHHH-HHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCC
Confidence 2 2333322 2224568999999998653332 233344444444422 2334555555
No 270
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.26 E-value=0.0084 Score=46.71 Aligned_cols=64 Identities=9% Similarity=0.293 Sum_probs=48.7
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC---CHHHHHHHhcccCcccc
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP---NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~---~~~~l~~L~~l~~v~~v 627 (628)
+...|+||.++.+.+.|+++++||..+...... ++.+.+.+.++.+- -..+++.|+.+++|..+
T Consensus 3 v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v 69 (71)
T cd04876 3 VEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDV 69 (71)
T ss_pred EEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEE
Confidence 456799999999999999999999999886533 35566666665332 23678888888888765
No 271
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.23 E-value=0.018 Score=61.89 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh-h-HHH----HcCCc---ccCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KAR----AVGVE---LVSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~----~~g~~---~~sl~ell~~aDvV~l~~Plt~~t 297 (628)
.++++|||.|.+|+..+..+.. .+ -+|.+|+++... + .+. ..++. ..++++++.+||+|+.++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--- 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--- 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence 5799999999999999888874 55 479999987532 1 112 12443 237899999999999999854
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
..++..+. +|+|+.+..++
T Consensus 209 ~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred CcEecHHH---cCCCceEEeeC
Confidence 35665543 57887766544
No 272
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.22 E-value=0.015 Score=55.77 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=50.7
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC-Cccc--CH-HHHhccCCEEEEcCC
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG-VELV--SF-DQALATADFISLHMP 292 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g-~~~~--sl-~ell~~aDvV~l~~P 292 (628)
...+|.|+++.|||.|.+|...++.|...|++|.+++|....+.. +++ +... .+ ++-+.++|+|+.++.
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCC
Confidence 356899999999999999999999999999999999887654432 232 1111 12 234677888887764
No 273
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.22 E-value=0.021 Score=63.04 Aligned_cols=89 Identities=24% Similarity=0.382 Sum_probs=64.7
Q ss_pred eecCCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCc
Q 006864 226 SLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 226 ~l~GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~ 295 (628)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||..........+ ...++++.++.||+|+++.+-.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~- 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHD- 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCH-
Confidence 589999999998 4467899999999999999999997543322222 1347889999999999998733
Q ss_pred cccccccHHHHhc-CCCCcEEEEc
Q 006864 296 TTSKIFNDETFAK-MKKGVRIVNV 318 (628)
Q Consensus 296 ~t~~li~~~~l~~-mk~gailIN~ 318 (628)
+-+. ++-+.+.. |+ ..+++|+
T Consensus 388 ~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 2222 35444544 54 5578874
No 274
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.21 E-value=0.015 Score=59.87 Aligned_cols=106 Identities=31% Similarity=0.455 Sum_probs=70.5
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEE--------CCCC-ChhHH----HHcCC-------------cccCHH-
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--------DPYA-PADKA----RAVGV-------------ELVSFD- 278 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~a----~~~g~-------------~~~sl~- 278 (628)
++.|+++.|-|+|++|+.+|+.|...|++|++. ||.- +.+.. .+.+. +.++-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 699999999999999999999999999999875 5542 11111 11222 122332
Q ss_pred HHh-ccCCEEEEcCCCCccccccccHHHHh-cCCCCcEEEEc-CCCchhcHHHHHHHHhCCCe
Q 006864 279 QAL-ATADFISLHMPLNPTTSKIFNDETFA-KMKKGVRIVNV-ARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 279 ell-~~aDvV~l~~Plt~~t~~li~~~~l~-~mk~gailIN~-aRg~~vde~aL~~aL~~g~i 338 (628)
+++ ..||+++.|. ..+.|+.+... .++.++.+|=- +.+.+ ..++.. .|++..|
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI 164 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGI 164 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCC
Confidence 666 5899999885 36678888877 77766655555 55554 455544 6666555
No 275
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.21 E-value=0.052 Score=60.43 Aligned_cols=109 Identities=23% Similarity=0.215 Sum_probs=68.6
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEE-ECCC-------C-ChhHH---H-----------H-----cCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPY-------A-PADKA---R-----------A-----VGVELV 275 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a---~-----------~-----~g~~~~ 275 (628)
+.++.|||+.|=|+|++|+..|+.|..+|++|++ .|.. - +.+.. . . .+++.+
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 5679999999999999999999999999999994 3432 1 11111 0 0 023333
Q ss_pred CHHHHhc-cCCEEEEcCCCCccccccccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 276 SFDQALA-TADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 276 sl~ell~-~aDvV~l~~Plt~~t~~li~~~~l~~m-k~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
+-++++. .||+.+-|. +.+.|+.+..+.+ +.++.+|--+--.....+|. +.|++..|
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~-~~L~~~GI 370 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIEAT-HLFKKNGV 370 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHH-HHHHHCCc
Confidence 4344443 688887765 5777887777655 45555555444334444543 44544443
No 276
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.15 E-value=0.012 Score=62.81 Aligned_cols=89 Identities=25% Similarity=0.289 Sum_probs=53.5
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-h-HH---HHcCCcc---cCHHHHhccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-D-KA---RAVGVEL---VSFDQALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a---~~~g~~~---~sl~ell~~aDvV~l~~Plt~~t~~ 299 (628)
+++||||.|..|+.-++.+.. ++. +|.+|+|+... + .+ ...++.. .+.++++++||+|+.++|-+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999998864 554 79999997521 1 11 1124432 27999999999999999855432 5
Q ss_pred cccHHHHhcCCCCcEEEEcCCCc
Q 006864 300 IFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~ 322 (628)
++..+ .+|+|+.|+.++...
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYT 227 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SS
T ss_pred cccHH---HcCCCcEEEEecCCC
Confidence 66655 468999999988543
No 277
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.14 E-value=0.021 Score=59.48 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=60.2
Q ss_pred CeEEEEecChhHHHHHHHHHcC-CCEEEE-ECCCCChhH-HHHc--CCcc-cCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADK-ARAV--GVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~-a~~~--g~~~-~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++||||+|.||+.+++.+... ++++.+ +++...... .... ++.. .+++++-.+.|+|+.|.|-.. . -+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~--~---~e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA--L---KE 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH--H---HH
Confidence 4799999999999999999865 566544 344322222 1222 3333 378888556999999998432 1 12
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHHHHhCC
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDE---EALVRALDSG 336 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde---~aL~~aL~~g 336 (628)
-....++.|.-++-.+-|.+.|. +.|.++.+++
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~ 112 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAG 112 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHC
Confidence 22233455555554444444443 4466666554
No 278
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.13 E-value=0.1 Score=55.60 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=63.6
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC--C-hhH-------HHHcCCc---ccCHHHHhccCCEEEEcC-
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-ADK-------ARAVGVE---LVSFDQALATADFISLHM- 291 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~--~-~~~-------a~~~g~~---~~sl~ell~~aDvV~l~~- 291 (628)
+.|.+|+++|- +++-++++..+..||++|....|.. . ... +...|.. ..++++.++.||+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 77899999997 7889999999999999999987753 2 111 2334532 248999999999998842
Q ss_pred -CCCcc----------ccccccHHHHhcCCCCcEEEEcC
Q 006864 292 -PLNPT----------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 292 -Plt~~----------t~~li~~~~l~~mk~gailIN~a 319 (628)
....+ ....++++.++.+|++++|.-|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 11110 12345666666666666666653
No 279
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.13 E-value=0.02 Score=47.50 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=45.1
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC----CCCCHHHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD----EEPNQDSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD----~~~~~~~l~~L~~ 620 (628)
.+.+..+|+||+++.|+.+|.++|+||-...+... ++.++-.+.+. .+.+++.+++|++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~~~~~~~~~~~~l~~ 65 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 46678899999999999999999999999988754 45777777762 2234456666654
No 280
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.12 E-value=0.025 Score=60.47 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=63.3
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCCCh-hH----HHHcCCcc--c-CHHHHhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-DK----ARAVGVEL--V-SFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~~----a~~~g~~~--~-sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
-++++|||.|..++.-++.+.. +. -+|.+||++... +. .++.++.. + +.++++++||+|+.++|- +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 4799999999999999988764 33 479999998632 11 12224432 3 789999999999999873 35
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
.++..+ .+|||+.|+.++.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 677655 4589999988874
No 281
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.11 E-value=0.081 Score=56.46 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=48.0
Q ss_pred ecCCeEEEEec---ChhHHHHHHHHHcCCC-EEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEE
Q 006864 227 LVGKTLAVMGF---GKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARAVGVEL-VSFDQALATADFISL 289 (628)
Q Consensus 227 l~GktiGIIGl---G~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~g~~~-~sl~ell~~aDvV~l 289 (628)
+.|.+|+++|= +++..++...+..||+ +|....|..- ++......+.. .++++.++.||+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 9999887531 11111112333 379999999999987
No 282
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.11 E-value=0.019 Score=62.75 Aligned_cols=88 Identities=23% Similarity=0.201 Sum_probs=63.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCC-CEEEEECCCC-ChhHHHHcC---Ccc--------cCHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVG---VEL--------VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g---~~~--------~sl~ell~~aDvV~l~~Plt~~ 296 (628)
+++.|||.|.||+.+|..|.+.| .+|++.|+.. ...+..... ++. -.+.+++++.|+|+.++|-.-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 68999999999999999999888 9999999985 333332332 221 147789999999999998543
Q ss_pred ccccccHHHH-hcCCCCcEEEEcCCCch
Q 006864 297 TSKIFNDETF-AKMKKGVRIVNVARGGV 323 (628)
Q Consensus 297 t~~li~~~~l-~~mk~gailIN~aRg~~ 323 (628)
+...+ +.++.|.-.++++-..-
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEcccCCc
Confidence 22333 34677888888875443
No 283
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.10 E-value=0.015 Score=60.34 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=70.2
Q ss_pred EEEEec-ChhHHHHHHHHHcCC----CEEEEECCCCChh--HHHH-------c-C--Ccc-cCHHHHhccCCEEEEcCCC
Q 006864 232 LAVMGF-GKVGSEVARRAKGLG----MNVIAHDPYAPAD--KARA-------V-G--VEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 232 iGIIGl-G~IG~~vA~~l~~~G----~~V~~~d~~~~~~--~a~~-------~-g--~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
|+|||. |.+|..+|..+...| -++..||...... ...+ . . +.. .++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 6899999764221 1111 1 1 111 2567899999999996522
Q ss_pred C--c-ccc--------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEEE-eec
Q 006864 294 N--P-TTS--------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQAA-LDV 345 (628)
Q Consensus 294 t--~-~t~--------~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga~-lDV 345 (628)
. + .++ .++. .+.+.+..|.++++|++-.-=+-...+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 1 1 011 1111 123444568999999963332333444444 4556788887 774
No 284
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.09 E-value=0.02 Score=62.75 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CC--CEEEEECCCCCh-h-HHH----Hc-C---Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LG--MNVIAHDPYAPA-D-KAR----AV-G---VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G--~~V~~~d~~~~~-~-~a~----~~-g---~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
-+++||||.|..++.-++.+.. +. -+|.+||+.... + .+. .. + +.. .+.++++++||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3799999999999999998876 42 389999998632 1 111 11 2 222 37999999999999999754
Q ss_pred c---cccccccHHHHhcCCCCcEEEEcCC
Q 006864 295 P---TTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~---~t~~li~~~~l~~mk~gailIN~aR 320 (628)
. .+..++..+ ++|+|+.|+.++.
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCc
Confidence 3 334677655 4589988876654
No 285
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.09 E-value=0.0052 Score=51.53 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=32.7
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD 607 (628)
+.-+|+||+++.|++.|.++|+||.+++..+-...-..++.++.+
T Consensus 7 v~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 7 VVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 345999999999999999999999999998755433445555555
No 286
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.07 E-value=0.019 Score=57.83 Aligned_cols=94 Identities=18% Similarity=0.304 Sum_probs=61.7
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCE-EEEECCCCChhHHH--HcCC-cccCHHHHhccCCEEEEcCCCCccccccccH
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMN-VIAHDPYAPADKAR--AVGV-ELVSFDQALATADFISLHMPLNPTTSKIFND 303 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~-V~~~d~~~~~~~a~--~~g~-~~~sl~ell~~aDvV~l~~Plt~~t~~li~~ 303 (628)
.++||||+|.||+.+.+.++.- +++ +.+||+........ ..+- ...+++|++++.|+++=|.. ++... +
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~Av~---e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PEAVR---E 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HHHHH---H
Confidence 3799999999999999999843 454 67789875433322 2232 23579999999999988775 22222 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHH
Q 006864 304 ETFAKMKKGVRIVNVARGGVIDEEA 328 (628)
Q Consensus 304 ~~l~~mk~gailIN~aRg~~vde~a 328 (628)
-..+.||.|.=+|=++-|.+.|++-
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHH
Confidence 2233456665555555677776553
No 287
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.06 E-value=0.011 Score=63.55 Aligned_cols=61 Identities=31% Similarity=0.412 Sum_probs=46.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHH--HcCC--cc---cCHHHHhccCCEEEE
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR--AVGV--EL---VSFDQALATADFISL 289 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~--~~g~--~~---~sl~ell~~aDvV~l 289 (628)
++||||||-|..|+.++..++.+|++|++.||........ ..-+ .+ ..+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999876322111 1111 11 148899999999976
No 288
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.06 E-value=0.043 Score=52.71 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=66.3
Q ss_pred cCCeEEEEe--cChhHHHHHHHHHcCCCEEEEECCCC---Ch--h-------HHHHcCC--cc-cCHHHHhccCCEEEEc
Q 006864 228 VGKTLAVMG--FGKVGSEVARRAKGLGMNVIAHDPYA---PA--D-------KARAVGV--EL-VSFDQALATADFISLH 290 (628)
Q Consensus 228 ~GktiGIIG--lG~IG~~vA~~l~~~G~~V~~~d~~~---~~--~-------~a~~~g~--~~-~sl~ell~~aDvV~l~ 290 (628)
.|+||++|| .+++..+++..+..||+++....|.. +. + .+...|. .. .++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 38999999999999999999988764 22 1 1122243 22 3899999999999875
Q ss_pred CCCC---cc--------ccccccHHHHhcCCCCcEEEEcC
Q 006864 291 MPLN---PT--------TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 291 ~Plt---~~--------t~~li~~~~l~~mk~gailIN~a 319 (628)
.-.. .+ ....++++.++.+|++++|.-|.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 5431 11 11457888999999999999885
No 289
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.03 E-value=0.0081 Score=51.69 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=44.7
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC---C-HHHHHHHhcc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP---N-QDSLKEIGKV 621 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~---~-~~~l~~L~~l 621 (628)
.+.+.-+|+||+++.|++.|+++|+||.+++... .++.-.|.+.++-+. + +++.+.|+.+
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l 66 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESNLDFAELQEELEEL 66 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4566779999999999999999999999998875 456777777776543 2 3444444444
No 290
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.97 E-value=0.021 Score=63.15 Aligned_cols=107 Identities=17% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHH-HcCCc-ccCHHHHhccCCEEEEcCCCCccccc-------
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR-AVGVE-LVSFDQALATADFISLHMPLNPTTSK------- 299 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~------- 299 (628)
.++|.|||+|.+|.++|+.|+..|++|.++|+........ ..+-. ....+.+..++|+++.+.+..+....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 4789999999999999999999999999999765321110 00001 11233445789999887765543111
Q ss_pred ---cccHHHHh--c--C-CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 300 ---IFNDETFA--K--M-KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 300 ---li~~~~l~--~--m-k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++.+..+. . + ..-.+=|-=+-|+.--.+-|...|+.
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 22222221 1 1 11234444456777777777777754
No 291
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.96 E-value=0.031 Score=59.19 Aligned_cols=62 Identities=19% Similarity=0.365 Sum_probs=43.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc---------CC--c--c-cCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------GV--E--L-VSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g~--~--~-~sl~ell~~aDvV~l~~P 292 (628)
++|+|||.|.+|..+|..+...|. +|..+|........... +. . . .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999987654 99999985432211111 11 1 1 245 45799999999863
No 292
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.95 E-value=0.13 Score=55.63 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=49.1
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC---ChhH---H----HHcCC--cc-cCHHHHhccCCEEEE
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA---PADK---A----RAVGV--EL-VSFDQALATADFISL 289 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~---a----~~~g~--~~-~sl~ell~~aDvV~l 289 (628)
.+.|++|+++|= .++..+++..+..+|++|....|.. +.+. + ...|. .. .++++.++.||+|..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 578999999997 6888899999999999999988753 2221 1 12343 22 489999999999988
No 293
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=95.94 E-value=0.0095 Score=49.53 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=47.5
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCC-CHHHHHHHhcccCcccc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~-~~~~l~~L~~l~~v~~v 627 (628)
|-+...|++|+++.|++.+++.++||..++.... +.-.+.+++.+.- =+.++++|+++++|.+|
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~~~~~L~~li~~L~~i~gV~~V 67 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTIEFEKLQTLMPEIRRIDGVEDV 67 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEecCHHHHHHHHHHHhCCCCceEE
Confidence 4566789999999999999999999999999543 3322233332211 14789999999999876
No 294
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.93 E-value=0.14 Score=54.57 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=79.5
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-h-----------HHHHcCC-------------cc-cCHHHHhc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D-----------KARAVGV-------------EL-VSFDQALA 282 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-----------~a~~~g~-------------~~-~sl~ell~ 282 (628)
-+++||||.|.||+.+|..+..-|++|..+|+.... + +..+.|. .. .++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 379999999999999999998877999999987311 1 1111110 00 1222 689
Q ss_pred cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCC
Q 006864 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEE 349 (628)
Q Consensus 283 ~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~E 349 (628)
+||+|+=++|-+-+.++-+-++.=+..|++++|=.-.++ +.-.++.++++.. ++ .++..|.+-
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~--iG~HFfNP~ 145 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALKRPERF--IGLHFFNPV 145 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhE--EEEeccCCC
Confidence 999999999988887776666666678999988654433 3445566677443 44 666666543
No 295
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.93 E-value=0.039 Score=62.16 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=71.2
Q ss_pred eecCCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHHH-Hc----------------------CC
Q 006864 226 SLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKAR-AV----------------------GV 272 (628)
Q Consensus 226 ~l~GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~----------------------g~ 272 (628)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||........ .. ++
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 589999999998 5577899999999999999999997543221 12 11
Q ss_pred ccc-CHHHHhccCCEEEEcCCCCccccccccHHH-HhcCCCCcEEEEcCCCchhcHHHHH
Q 006864 273 ELV-SFDQALATADFISLHMPLNPTTSKIFNDET-FAKMKKGVRIVNVARGGVIDEEALV 330 (628)
Q Consensus 273 ~~~-sl~ell~~aDvV~l~~Plt~~t~~li~~~~-l~~mk~gailIN~aRg~~vde~aL~ 330 (628)
+.+ ++++.++.||+|+++++-. +-+. ++-+. .+.|++..+|+|+ | +++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-r-n~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-R-NVLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-C-CCCCHHHHH
Confidence 222 5678999999999998733 3333 34333 4557766689995 4 455665543
No 296
>PLN02527 aspartate carbamoyltransferase
Probab=95.93 E-value=0.19 Score=53.60 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=61.5
Q ss_pred eecCCeEEEEecC---hhHHHHHHHHHcC-CCEEEEECCCC---Chh---HHHHcCCcc---cCHHHHhccCCEEEEcCC
Q 006864 226 SLVGKTLAVMGFG---KVGSEVARRAKGL-GMNVIAHDPYA---PAD---KARAVGVEL---VSFDQALATADFISLHMP 292 (628)
Q Consensus 226 ~l~GktiGIIGlG---~IG~~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~~~---~sl~ell~~aDvV~l~~P 292 (628)
.+.|++|+++|-+ ++..+++..+..| |++|....|.. +.+ .+++.|... .++++.++.||+|....
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~- 226 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTR- 226 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECC-
Confidence 3789999999976 6889999998887 99999887743 222 123334432 38999999999999843
Q ss_pred CCcc-------------ccccccHHHHhcCCCCcEEEEc
Q 006864 293 LNPT-------------TSKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 293 lt~~-------------t~~li~~~~l~~mk~gailIN~ 318 (628)
...+ -...++++.++.+|++++|.-|
T Consensus 227 ~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 227 IQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred cchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 2111 0134455555566666666655
No 297
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.79 E-value=0.093 Score=56.61 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=49.8
Q ss_pred eecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC--Chh--------HHHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
.+.|++|+++|-+ ++..+++..+..||+++.+..|.. +.. .++..|.. . .++++.+++||+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4788999999976 689999999999999999987743 211 12234532 2 3899999999999884
No 298
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.78 E-value=0.12 Score=55.66 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC--hhHHHHHHHHH
Q 006864 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (628)
Q Consensus 172 a~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG--~IG~~vA~~l~ 249 (628)
+...+|+|+|+-+....++- +|+=++.+.+++ .| .+.|++|++||-+ ++.++.+..+.
T Consensus 118 a~~s~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~~-----------------~g-~l~g~kia~vGD~~~~v~~Sl~~~~~ 177 (332)
T PRK04284 118 AEYSGVPVWNGLTDEDHPTQ--VLADFLTAKEHL-----------------KK-PYKDIKFTYVGDGRNNVANALMQGAA 177 (332)
T ss_pred HHhCCCCEEECCCCCCChHH--HHHHHHHHHHHh-----------------cC-CcCCcEEEEecCCCcchHHHHHHHHH
Confidence 34456899998654433332 222233333211 12 3778999999975 88999999999
Q ss_pred cCCCEEEEECCCC--Ch-h-------HHHHcCCc--c-cCHHHHhccCCEEEEcCCC--Cc------c-----ccccccH
Q 006864 250 GLGMNVIAHDPYA--PA-D-------KARAVGVE--L-VSFDQALATADFISLHMPL--NP------T-----TSKIFND 303 (628)
Q Consensus 250 ~~G~~V~~~d~~~--~~-~-------~a~~~g~~--~-~sl~ell~~aDvV~l~~Pl--t~------~-----t~~li~~ 303 (628)
.||++|...-|.. +. + .++..|.. . .++++.++.||+|..-.=. .. + -...+++
T Consensus 178 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~ 257 (332)
T PRK04284 178 IMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNK 257 (332)
T ss_pred HcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCH
Confidence 9999999988752 21 1 11234532 2 3899999999999884210 00 0 1234566
Q ss_pred HHHhcCC-CCcEEEEcC
Q 006864 304 ETFAKMK-KGVRIVNVA 319 (628)
Q Consensus 304 ~~l~~mk-~gailIN~a 319 (628)
+.++.+| ++++|.-|.
T Consensus 258 e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 258 EMMKKTGNPNAIFEHCL 274 (332)
T ss_pred HHHhhcCCCCcEEECCC
Confidence 6677665 477776664
No 299
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.77 E-value=0.021 Score=57.00 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=33.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46889999999999999999999999997 89999875
No 300
>PRK04435 hypothetical protein; Provisional
Probab=95.75 E-value=0.024 Score=53.91 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=53.8
Q ss_pred CcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCC----HHHHHHHhcccCcccc
Q 006864 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN----QDSLKEIGKVHFVARI 627 (628)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~----~~~l~~L~~l~~v~~v 627 (628)
--.|.+...|+||+++.|.+.|+++++||-.++... ..+|.+-+.+.++.... ++++++|+++++|.+|
T Consensus 69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V 141 (147)
T PRK04435 69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKV 141 (147)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEE
Confidence 345566789999999999999999999999998743 23466766666754332 3799999999999876
No 301
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.69 E-value=0.0099 Score=59.87 Aligned_cols=220 Identities=19% Similarity=0.181 Sum_probs=122.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHH-----------HcCC--------c-----------ccC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-----------AVGV--------E-----------LVS 276 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g~--------~-----------~~s 276 (628)
.=+.++|||.|.||+.+|+.+..-|+.|..+|..... .++. ..+. + ..+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 3478999999999999999999999999999976422 1110 0000 0 113
Q ss_pred HHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCC
Q 006864 277 FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (628)
Q Consensus 277 l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~ 355 (628)
+.++++++|+|+=++--+-+.+.-+-++.=..+|+.+++. |+++ +...++..+++... ..+||..|.+-|.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~s-rf~GlHFfNPvPv---- 161 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPS-RFAGLHFFNPVPV---- 161 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChh-hhceeeccCCchh----
Confidence 5667777888776654333333222222223467777765 5544 44556667776652 2478888876654
Q ss_pred ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCcccccccccHHHHHHHHhHHHHHHhcCC
Q 006864 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGG 435 (628)
Q Consensus 356 ~L~~~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~vn~p~~~~~~~~~~~p~~~lAerlG~la~qL~~g~ 435 (628)
..+=-||=|+...--|.++....+.. -|+.+..+-.-|.+.-..+ +-||+.=|-|+=. + |.
T Consensus 162 --MKLvEVir~~~TS~eTf~~l~~f~k~---------~gKttVackDtpGFIVNRl--LiPyl~ea~r~ye--r----Gd 222 (298)
T KOG2304|consen 162 --MKLVEVIRTDDTSDETFNALVDFGKA---------VGKTTVACKDTPGFIVNRL--LIPYLMEAIRMYE--R----GD 222 (298)
T ss_pred --HHHhhhhcCCCCCHHHHHHHHHHHHH---------hCCCceeecCCCchhhhHH--HHHHHHHHHHHHH--h----cC
Confidence 23334676776443333333222221 1444444555565555556 7788876655311 1 10
Q ss_pred CCceEEEE-------EEeecCCCCCCCcccchHHHHHhhccccccC
Q 006864 436 SGIKSVKL-------IYRSARDPDDLDTRILRAMITKGIIEPISAS 474 (628)
Q Consensus 436 ~~~~~v~i-------~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~ 474 (628)
-.-++|.. +-.|.|.-.+|-+.-+...+++|.-+.+.++
T Consensus 223 AskeDIDtaMklGagyPMGPfEL~DyvGLDt~kfvmdgwhe~~pe~ 268 (298)
T KOG2304|consen 223 ASKEDIDTAMKLGAGYPMGPFELADYVGLDTCKFVMDGWHEGYPED 268 (298)
T ss_pred CcHhhHHHHHhccCCCCCChHHHHHHhhHHHHHHHHHHHHhcCCcc
Confidence 00111110 1235443236766667777777777665443
No 302
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.68 E-value=0.17 Score=53.98 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=48.4
Q ss_pred ecCCeEEEEec---ChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~ 291 (628)
+.|++|+++|- +++..+++..+..||+++....|..-..... ..+. ..++++.++.||+|....
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~-~~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM-PEYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc-cceEEECCHHHHhCCCCEEEECC
Confidence 77999999988 5899999999999999999988753110000 1122 238999999999998743
No 303
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.68 E-value=0.03 Score=60.01 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=67.5
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc---------C----Ccc-cCHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------G----VEL-VSFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----~~~-~sl~ell~~aDvV~l~~ 291 (628)
+..++|+|||.|.+|..+|..+...|. +|..+|.......+..+ + +.. .++ +.++.||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 345799999999999999999887774 89999976542211111 1 111 255 5679999999977
Q ss_pred CCCc--c--------------cccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHh--CCCeeEEE
Q 006864 292 PLNP--T--------------TSKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALD--SGVVAQAA 342 (628)
Q Consensus 292 Plt~--~--------------t~~li~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL~--~g~i~ga~ 342 (628)
-... . +..++. .+.+....|.++++|++-.-=+....+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 3211 0 111111 12233445677899987433333444444332 23565654
No 304
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=95.68 E-value=0.051 Score=57.71 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=60.6
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-h-HHHH----cCCc--c-cCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-D-KARA----VGVE--L-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a~~----~g~~--~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
-+++||||.|..|+.-++.+.. +.. +|.+||++... + .+.. .|++ . .+.++++.+||+|+.++|-+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 4899999999999988888764 443 79999988632 1 1111 2432 2 37999999999999998743
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
..++..+. +|||+.+.-++
T Consensus 194 ~P~~~~~~---l~pg~hV~aiG 212 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAG 212 (301)
T ss_pred CcEecHHH---cCCCceEEecC
Confidence 46676553 57887665554
No 305
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.026 Score=63.89 Aligned_cols=109 Identities=21% Similarity=0.240 Sum_probs=70.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc---CHHHHhccCCEEEEcCCCCcccc----
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV---SFDQALATADFISLHMPLNPTTS---- 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~---- 298 (628)
+.|+++.|+|+|.+|.+.++.|+..|++|+++|.... ....++.|+... ...+.+.++|+|+..--..+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 4689999999999999999999999999999996532 122344576543 23456778999877653333211
Q ss_pred ------ccccHHHHh-cC--------CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 ------KIFNDETFA-KM--------KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 ------~li~~~~l~-~m--------k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++++-+|. .+ +...+-|-=+-|+.--.+-+...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123332332 11 11234455567888888877777765
No 306
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.63 E-value=0.043 Score=59.39 Aligned_cols=87 Identities=26% Similarity=0.306 Sum_probs=59.9
Q ss_pred CCeEEEEecChhHHHHHHHHH-cCCC-EEEEECCCCCh--hHH---HHcCCc--c-cCHHHHhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKA---RAVGVE--L-VSFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a---~~~g~~--~-~sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
-++++|||.|..++.-++.+. -+.. +|.+|++.... ..+ .+.+++ . .++++++++||+|+.++|-+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 378999999999998887765 3444 79999988532 111 122332 2 37999999999999999733 222
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
-++..+ .+|+|+.|.-++
T Consensus 208 Pvl~~~---~lkpG~hV~aIG 225 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVG 225 (346)
T ss_pred ceecHH---HcCCCcEEEecC
Confidence 456554 358998766655
No 307
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.62 E-value=0.2 Score=55.70 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=67.1
Q ss_pred hHHHhcCceEEcCC-CCCh---hhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecC---hhHH
Q 006864 170 QAATEFGCLVVNAP-IANT---VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG---KVGS 242 (628)
Q Consensus 170 ~aa~~~GI~V~n~p-~~~~---~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG---~IG~ 242 (628)
+.|...+|+|+|+- |... ++.|+. +.+.+++ |. .|..+.|+||+++|-+ ++..
T Consensus 198 e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~---------g~------~g~~l~G~kIa~vGD~~~~rv~~ 257 (429)
T PRK11891 198 EFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREF---------SR------LGKIVDGAHIALVGDLKYGRTVH 257 (429)
T ss_pred HHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHh---------Cc------cCCCcCCCEEEEECcCCCChHHH
Confidence 44556789999997 4443 444442 2222211 11 1224789999999994 8999
Q ss_pred HHHHHHHcC-CCEEEEECCCC---Chh---HHHHcCC--cc-cCHHHHhccCCEEEEcC
Q 006864 243 EVARRAKGL-GMNVIAHDPYA---PAD---KARAVGV--EL-VSFDQALATADFISLHM 291 (628)
Q Consensus 243 ~vA~~l~~~-G~~V~~~d~~~---~~~---~a~~~g~--~~-~sl~ell~~aDvV~l~~ 291 (628)
+++..+..+ ||+|....|.. +.+ .+.+.|. +. .++++.++.||+|....
T Consensus 258 Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 258 SLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred HHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 999998876 99999987753 222 2223353 32 38999999999999844
No 308
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.62 E-value=0.15 Score=54.86 Aligned_cols=64 Identities=28% Similarity=0.413 Sum_probs=49.5
Q ss_pred ecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC--Chh--------HHHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 227 LVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 227 l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
+.|+||++||-+ ++..+++..+..||++|....|.. ..+ .++..|.. . .+++++++.||+|..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 789999999997 889999999999999999987753 211 12234543 2 3799999999999884
No 309
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.60 E-value=0.25 Score=53.77 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=47.6
Q ss_pred eecCCeEEEEecC--------hhHHHHHHHHHcCCCEEEEECCCC---ChhH-------HHHcCCc--c-cCHHHHhccC
Q 006864 226 SLVGKTLAVMGFG--------KVGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGVE--L-VSFDQALATA 284 (628)
Q Consensus 226 ~l~GktiGIIGlG--------~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~g~~--~-~sl~ell~~a 284 (628)
.+.|+||+|+|.| ++.++++..+..|||+|....|.. ..+. +++.|.. . .++++.++.+
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 445778888999999999988753 2221 2234543 2 3899999999
Q ss_pred CEEEEc
Q 006864 285 DFISLH 290 (628)
Q Consensus 285 DvV~l~ 290 (628)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999886
No 310
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.55 E-value=0.047 Score=58.66 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CCC-EEEEECCCCCh-hH-H----HHcCC--cc-cCHHHHhccCCEEEEcCCCCccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-DK-A----RAVGV--EL-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~~-a----~~~g~--~~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
-+++||||.|..++.-.+.++. |+. +|.+|++.... +. + ...+. .. .+.+++++.||+|+.++|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 3689999999999999999874 554 78999987522 21 1 12222 22 378999999999999998664
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
.++..+.+ |||+.|..++.
T Consensus 208 -Pil~~~~l---~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEWL---KPGTHINAIGA 226 (330)
T ss_pred -CeecHhhc---CCCcEEEecCC
Confidence 66666554 79988888873
No 311
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.55 E-value=0.036 Score=60.01 Aligned_cols=86 Identities=17% Similarity=0.304 Sum_probs=56.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHcC-CCEEEE-ECCCCC--hhHHHHc----C-----CcccCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAP--ADKARAV----G-----VELVSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~----g-----~~~~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|+|. |.+|+.+++.|... +.++.+ +++... ....... + +...+.++++.++|+|++|+|-..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 47999998 99999999999987 678874 464431 1111111 1 122255677678999999999331
Q ss_pred cccccccHHHHhc-CCCCcEEEEcCCC
Q 006864 296 TTSKIFNDETFAK-MKKGVRIVNVARG 321 (628)
Q Consensus 296 ~t~~li~~~~l~~-mk~gailIN~aRg 321 (628)
..+.... .+.|..+||.+-.
T Consensus 81 ------s~~~~~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 ------SAELAPELLAAGVKVIDLSAD 101 (346)
T ss_pred ------HHHHHHHHHhCCCEEEeCChh
Confidence 2333332 3678999998743
No 312
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.51 E-value=0.054 Score=56.12 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=45.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHcC-CCEEEE-ECCCCChh-HHHHcCCc-ccCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAPAD-KARAVGVE-LVSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~-~a~~~g~~-~~sl~ell~~aDvV~l~~P 292 (628)
.+|+|+|+ |+||+.+++.+... ++++.+ +|+..... .....++. ..+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998864 688776 67654211 11223443 3478999988999997775
No 313
>PLN02342 ornithine carbamoyltransferase
Probab=95.44 E-value=0.23 Score=53.75 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=78.7
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAK 249 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~ 249 (628)
.+..-+|+|+|+-+....++ .+++=++.+.++ .| .+.|+||+++|- .++-.+++..+.
T Consensus 157 la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~------------------~G-~l~glkva~vGD~~nva~Sli~~~~ 215 (348)
T PLN02342 157 LAEYSSVPVINGLTDYNHPC--QIMADALTIIEH------------------IG-RLEGTKVVYVGDGNNIVHSWLLLAA 215 (348)
T ss_pred HHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCCEEEEECCCchhHHHHHHHHH
Confidence 34556799999965443332 122223322221 12 378899999997 468888888889
Q ss_pred cCCCEEEEECCCC--C-hh---HHHHcC---Ccc-cCHHHHhccCCEEEEcC---CCCcc---------ccccccHHHHh
Q 006864 250 GLGMNVIAHDPYA--P-AD---KARAVG---VEL-VSFDQALATADFISLHM---PLNPT---------TSKIFNDETFA 307 (628)
Q Consensus 250 ~~G~~V~~~d~~~--~-~~---~a~~~g---~~~-~sl~ell~~aDvV~l~~---Plt~~---------t~~li~~~~l~ 307 (628)
.||++|....|.. + .+ .++..| ++. .++++.++.||+|..-. -...+ ....++++.++
T Consensus 216 ~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~ 295 (348)
T PLN02342 216 VLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMK 295 (348)
T ss_pred HcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHh
Confidence 9999999987753 2 11 123334 232 37999999999999853 11111 12445666666
Q ss_pred cCCCCcEEEEcC
Q 006864 308 KMKKGVRIVNVA 319 (628)
Q Consensus 308 ~mk~gailIN~a 319 (628)
.+|++++|.-|.
T Consensus 296 ~ak~~aivMHpL 307 (348)
T PLN02342 296 LAGPQAYFMHCL 307 (348)
T ss_pred ccCCCcEEeCCC
Confidence 666666666663
No 314
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.43 E-value=0.022 Score=59.84 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=43.2
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~ 609 (628)
+|.+.-+|+||+|++|++.|+++|+||.+++-.....++.=.|++.+|-+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~ 51 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE 51 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence 45677899999999999999999999999999877667788888888744
No 315
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.40 E-value=0.017 Score=52.72 Aligned_cols=85 Identities=19% Similarity=0.384 Sum_probs=50.1
Q ss_pred eEEEEe-cChhHHHHHHHHHc-CCCEEEE-ECCCC--ChhHHHHc----CCc---ccC-HHHHhccCCEEEEcCCCCccc
Q 006864 231 TLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDPYA--PADKARAV----GVE---LVS-FDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 231 tiGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~--~~~~a~~~----g~~---~~s-l~ell~~aDvV~l~~Plt~~t 297 (628)
+||||| .|.+|+.+.++|.. ..+++.. +++.. ........ +.. ..+ -.+.+.++|+|++|+|-.. +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 689999 99999999999985 3466554 33332 11111111 111 111 2344599999999998332 1
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aR 320 (628)
+.+ ...+ +++|+.+||.+.
T Consensus 80 ~~~--~~~~--~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KEL--APKL--LKAGIKVIDLSG 98 (121)
T ss_dssp HHH--HHHH--HHTTSEEEESSS
T ss_pred HHH--HHHH--hhCCcEEEeCCH
Confidence 211 1112 588999999874
No 316
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.38 E-value=0.071 Score=56.45 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=64.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcCCCCcccc---c----
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTS---K---- 299 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~Plt~~t~---~---- 299 (628)
.|++++|||-=.--..++++|...|++|..+.-. . +.....|++.+ +.++++++||+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~-~-~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFD-Q-LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecc-c-cccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 4789999999999999999999999999875311 1 11123466665 67888999999999988754321 1
Q ss_pred ---cccHHHHhcCCCCcEEE
Q 006864 300 ---IFNDETFAKMKKGVRIV 316 (628)
Q Consensus 300 ---li~~~~l~~mk~gailI 316 (628)
-++.+.+++||+++.++
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE
Confidence 13578999999998544
No 317
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.35 E-value=0.045 Score=56.56 Aligned_cols=113 Identities=21% Similarity=0.190 Sum_probs=74.4
Q ss_pred HHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC-Ch------hHHHHc
Q 006864 199 ASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PA------DKARAV 270 (628)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~------~~a~~~ 270 (628)
.+.+|++.++.++ .|++++..|++|+|+ |.||..+|+.|.+.+.+....-+.. .. .....+
T Consensus 148 yaa~r~Vl~~~~~-----------lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~ 216 (351)
T COG5322 148 YAACRQVLKHFAQ-----------LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEEL 216 (351)
T ss_pred HHHHHHHHHHHHH-----------hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccccc
Confidence 4567777665543 489999999999996 9999999999998887654443221 11 111223
Q ss_pred CCc-ccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006864 271 GVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 271 g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~ 327 (628)
+.. ..+++..+.+.|+++-..... +-..|+.+. +|||+.+||-++.+=+|+.
T Consensus 217 ~~~~i~s~d~~~~~e~i~v~vAs~~--~g~~I~pq~---lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 217 GRGKIMSLDYALPQEDILVWVASMP--KGVEIFPQH---LKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred CCCeeeeccccccccceEEEEeecC--CCceechhh---ccCCeEEEcCCcCcccccc
Confidence 332 347776666666665544322 344566554 5999999999988766664
No 318
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.34 E-value=0.042 Score=59.36 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.6
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEEEE-CC
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIAH-DP 260 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~ 260 (628)
.+|||+|+|+||+.+++.+.. -+|++.+. |+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~ 34 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT 34 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC
Confidence 379999999999999998875 46888775 53
No 319
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.34 E-value=0.26 Score=52.62 Aligned_cols=66 Identities=21% Similarity=0.399 Sum_probs=50.7
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCCC-hh-------HHHHcC-Ccc-cCHHHHhccCCEEEEcC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-AD-------KARAVG-VEL-VSFDQALATADFISLHM 291 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~-------~a~~~g-~~~-~sl~ell~~aDvV~l~~ 291 (628)
.+.|++|++||- +++..+++..+..|||+|....|... .+ .++..| +.. .++++.++.||+|..-.
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 478999999998 79999999999999999999988542 11 122223 332 48999999999998843
No 320
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.34 E-value=0.046 Score=50.28 Aligned_cols=98 Identities=21% Similarity=0.308 Sum_probs=55.9
Q ss_pred eEEEEec-ChhHHHHHHHHHc-CCCEEEE-ECCCCCh----hHHH-----HcCCcc-cCHHHHhccCCEEEEcCCCCccc
Q 006864 231 TLAVMGF-GKVGSEVARRAKG-LGMNVIA-HDPYAPA----DKAR-----AVGVEL-VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 231 tiGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~----~~a~-----~~g~~~-~sl~ell~~aDvV~l~~Plt~~t 297 (628)
+|+|+|+ |+||+.+++.+.. -|+++.+ +|+..+. +... ..++.. .++++++.++|+++-.. +++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 7999999 9999999999987 7888665 5655411 1111 223332 37999999999997766 3432
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRAL 333 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL 333 (628)
..-.-+.. ++.|.-+|-...|---.+.+.++.+
T Consensus 80 ~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 80 VYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp HHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred hHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHH
Confidence 21111222 3446666665555543343444443
No 321
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.15 Score=54.44 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=70.3
Q ss_pred hHHHHHHHHHcCCCEEEEECCCCCh--------hHH-----------HHcC-------------Cccc-C--HHHHhccC
Q 006864 240 VGSEVARRAKGLGMNVIAHDPYAPA--------DKA-----------RAVG-------------VELV-S--FDQALATA 284 (628)
Q Consensus 240 IG~~vA~~l~~~G~~V~~~d~~~~~--------~~a-----------~~~g-------------~~~~-s--l~ell~~a 284 (628)
||..+|..+...|++|..||+.... +++ ...| ++.+ + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999999999999987621 100 1111 1122 2 55788999
Q ss_pred CEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhC-CCeeE
Q 006864 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQ 340 (628)
Q Consensus 285 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~g 340 (628)
|+|+-++|-+.+.+.-+-.+..+.++++++|... ...+....|.+.++. .++.|
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSn--tS~~~~~~la~~~~~p~r~~g 135 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAST--TSTFLVTDLQRHVAHPERFLN 135 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEc--cccCCHHHHHhhcCCcccEEE
Confidence 9999999999988888777777889999999544 445566667776643 35533
No 322
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.32 E-value=1.1 Score=47.04 Aligned_cols=168 Identities=16% Similarity=0.128 Sum_probs=106.3
Q ss_pred ceeeecCCeEEEEecChhHHHHHHHHHcC----CC-------EEEEECCCC---------Ch---hHHHHcC-CcccCHH
Q 006864 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGL----GM-------NVIAHDPYA---------PA---DKARAVG-VELVSFD 278 (628)
Q Consensus 223 ~g~~l~GktiGIIGlG~IG~~vA~~l~~~----G~-------~V~~~d~~~---------~~---~~a~~~g-~~~~sl~ 278 (628)
.|..|...+|.|+|.|.-|-.+|+.+... |+ +++.+|+.- .. ..++... -...+|.
T Consensus 19 ~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~ 98 (279)
T cd05312 19 TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLL 98 (279)
T ss_pred hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHH
Confidence 45678889999999999999999999876 77 788888651 11 1111111 0234899
Q ss_pred HHhc--cCCEEEEcCCCCccccccccHHHHhcCC---CCcEEEEcCCCchh---cHHHHHHHHhCCCeeEEEeeccCCCC
Q 006864 279 QALA--TADFISLHMPLNPTTSKIFNDETFAKMK---KGVRIVNVARGGVI---DEEALVRALDSGVVAQAALDVFTEEP 350 (628)
Q Consensus 279 ell~--~aDvV~l~~Plt~~t~~li~~~~l~~mk---~gailIN~aRg~~v---de~aL~~aL~~g~i~ga~lDV~~~EP 350 (628)
|+++ .+|+++=+- ..-+.|+++.++.|. +..+|.=.+....- ..++.+++-+...|.+.|.-.-..+.
T Consensus 99 e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~ 174 (279)
T cd05312 99 EVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEY 174 (279)
T ss_pred HHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeee
Confidence 9999 889997632 124799999999998 89999999987652 33443443333347666654322222
Q ss_pred CCCCCccccCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHHcC
Q 006864 351 PAKDSKLVQHENVTVTPHLGASTKE-----AQEGVAIEIAEAVVGALRG 394 (628)
Q Consensus 351 ~~~~~~L~~~~nvilTPHig~~T~e-----a~~~~~~~~~~~i~~~l~g 394 (628)
.......=+..|+++-|=++-.... --+.|-..+++.|.++..-
T Consensus 175 ~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~ 223 (279)
T cd05312 175 NGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTD 223 (279)
T ss_pred CCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCc
Confidence 1111122356799999988743221 1234445566666665543
No 323
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.31 E-value=0.79 Score=47.49 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC-----------EEEEEC
Q 006864 191 AEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-----------NVIAHD 259 (628)
Q Consensus 191 AE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-----------~V~~~d 259 (628)
|=-+++-+++.+| ..|..|...++.|+|.|..|-.+|+.+...++ +++.+|
T Consensus 5 aaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD 66 (254)
T cd00762 5 ASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVD 66 (254)
T ss_pred HHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEEC
Confidence 4445666666666 24567888999999999999999999987765 578888
Q ss_pred CCC---------ChhHHH-----HcCCcccCHHHHhc--cCCEEEEcCCCCccccccccHHHHhcCC---CCcEEEEcCC
Q 006864 260 PYA---------PADKAR-----AVGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDETFAKMK---KGVRIVNVAR 320 (628)
Q Consensus 260 ~~~---------~~~~a~-----~~g~~~~sl~ell~--~aDvV~l~~Plt~~t~~li~~~~l~~mk---~gailIN~aR 320 (628)
+.- ...+.. ...-...+|.|+++ ..|+++=.. ..-++|.++.++.|. +..+|.=.++
T Consensus 67 ~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSN 142 (254)
T cd00762 67 RKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSN 142 (254)
T ss_pred CCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCC
Confidence 641 111110 11112348999999 999997632 235899999999998 8899999988
Q ss_pred Cch---hcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCC
Q 006864 321 GGV---IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 321 g~~---vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~ 371 (628)
... +..++.+++=+...|.+.|.-.+.++-.......=+..|+++-|=++-
T Consensus 143 Pt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGigl 196 (254)
T cd00762 143 PTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVAL 196 (254)
T ss_pred cCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhh
Confidence 765 344554555444467666665444442111112225679999998874
No 324
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.29 E-value=0.032 Score=58.88 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=40.9
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD 607 (628)
+.|.+.-+|+||+|++|++.|+++|+||.+++-..+...+.-+|.++++
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 4666778999999999999999999999999987545566777777766
No 325
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.27 E-value=0.095 Score=54.09 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=59.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~m 309 (628)
-++-|+|-|.+++.+|+.++.+|++|.++|++.... .. ..+..++.+....| .+.+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~~---------~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--PE---------DLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--cc---------cCCCCceEEecCCH----------HHHHhcC
Confidence 478999999999999999999999999999874211 00 01123332322111 2333345
Q ss_pred CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 310 KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 310 k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+...+|=+.++.-.|.++|..+|++
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~~ 185 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALRR 185 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHhC
Confidence 67778888889999999999999943
No 326
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.26 E-value=0.044 Score=60.95 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh------HHHHcCCccc---CHHHHhccCCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD------KARAVGVELV---SFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~ 296 (628)
++.+|++.|+|.|.+|.++|+.|...|++|.++|+..... .....|+... ..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 4679999999999999999999999999999999864221 1123354432 234567789999886544333
Q ss_pred cccc----------ccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 TSKI----------FND-ETFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t~~l----------i~~-~~l~~-mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
...+ +.. +.+.. .+.-.+-|-=+.|+.--.+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 2211 111 11222 232234444467888888888888865
No 327
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.027 Score=57.23 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=44.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH--cCCccc--------CHHHH-hccCCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA--VGVELV--------SFDQA-LATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--~g~~~~--------sl~el-l~~aDvV~l~~P 292 (628)
|++.|+|+|+.|..+|+.|...|++|+..|..... ....+ .++..+ .|.++ +.++|.++..+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 57999999999999999999999999999987522 22111 232211 24444 667777777665
No 328
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.26 E-value=0.082 Score=43.77 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=45.5
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC----CC-CHHHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE----EP-NQDSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~----~~-~~~~l~~L~~ 620 (628)
.+.+..+|+||...+|+.+|+.+|+||...++... .+|.++-++.+.. ++ +++-+++|++
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~ 67 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIRE 67 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHH
Confidence 56677889999999999999999999999999754 4567777777632 22 4555565543
No 329
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.25 E-value=0.048 Score=60.50 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=54.5
Q ss_pred eeeecCCeEEEEec----------ChhHHHHHHHHHcCC-CEEEEECCCCChhHHH-HcCCcccCHHHHhccCCEEEEcC
Q 006864 224 GVSLVGKTLAVMGF----------GKVGSEVARRAKGLG-MNVIAHDPYAPADKAR-AVGVELVSFDQALATADFISLHM 291 (628)
Q Consensus 224 g~~l~GktiGIIGl----------G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~-~~g~~~~sl~ell~~aDvV~l~~ 291 (628)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+|||........ ...+...++++.++.||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 56789999999998 456789999999996 9999999986432111 11223468999999999999998
Q ss_pred CC
Q 006864 292 PL 293 (628)
Q Consensus 292 Pl 293 (628)
+-
T Consensus 395 ~~ 396 (415)
T PRK11064 395 DH 396 (415)
T ss_pred CC
Confidence 73
No 330
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.21 E-value=0.042 Score=55.34 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=66.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH---HHcCCcc----cCHHHHhccCCEEEEcCCCCcc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA---RAVGVEL----VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a---~~~g~~~----~sl~ell~~aDvV~l~~Plt~~ 296 (628)
..++.||++.|||-|.+|..=++.+...|.+|+++.|....+.. ...++.. .+.+++ ..+++|+.+++
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~-~~~~lviaAt~---- 81 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL-DDAFLVIAATD---- 81 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh-cCceEEEEeCC----
Confidence 46899999999999999999999999999999999988733321 2222222 233344 44999999886
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
..-+|+..+..+++-.+++|+.
T Consensus 82 -d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 82 -DEELNERIAKAARERRILVNVV 103 (210)
T ss_pred -CHHHHHHHHHHHHHhCCceecc
Confidence 2335788888888888999974
No 331
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.20 E-value=0.04 Score=61.67 Aligned_cols=109 Identities=26% Similarity=0.378 Sum_probs=70.4
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCcccCH-HHHhccCCEEEEcC--CCC-c----c-
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVELVSF-DQALATADFISLHM--PLN-P----T- 296 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~~~sl-~ell~~aDvV~l~~--Plt-~----~- 296 (628)
+.|++|.|+|+|.+|.++|+.|+..|.+|.++|...... .....|++.... .+-+.++|+|+..- |.+ + .
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v 86 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVV 86 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHH
Confidence 678999999999999999999999999999999764221 223456653322 23356899887532 211 1 1
Q ss_pred --cc----ccccH-HHHhc-C-----CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 --TS----KIFND-ETFAK-M-----KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 --t~----~li~~-~~l~~-m-----k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++ .++.+ +.+.. + +...+-|.=+.|+.--.+-|...|+.
T Consensus 87 ~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 87 DLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 01 11332 22222 2 33455566678999888888888875
No 332
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.19 E-value=0.15 Score=55.58 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=88.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh----------------HHHHcC-----Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD----------------KARAVG-----VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~a~~~g-----~~~-~sl~ell~~aDvV 287 (628)
++|.|+|.|-+|...+..+..+|++|+.+|.....- ...+.+ ..+ .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 579999999999999999999999999998542111 111111 122 3688899999999
Q ss_pred EEcCCCCcccccccc--------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEee-ccCCCCCCCCCccc
Q 006864 288 SLHMPLNPTTSKIFN--------DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD-VFTEEPPAKDSKLV 358 (628)
Q Consensus 288 ~l~~Plt~~t~~li~--------~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lD-V~~~EP~~~~~~L~ 358 (628)
++++|..+...+-++ ++..+.++..+++|+=+.-.+=-.+.+.+-+....-.. -.+ +|.+|=+-..+-++
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 999996665455444 33455677769999988755555555555444432111 122 35566554433333
Q ss_pred ---cCCcEEEcCCCCCCcHH
Q 006864 359 ---QHENVTVTPHLGASTKE 375 (628)
Q Consensus 359 ---~~~nvilTPHig~~T~e 375 (628)
.-+++++ |..++.
T Consensus 160 D~~~PdRIVi----G~~~~~ 175 (414)
T COG1004 160 DFLYPDRIVI----GVRSER 175 (414)
T ss_pred hccCCCeEEE----ccCChh
Confidence 3467765 455544
No 333
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.18 E-value=0.041 Score=58.79 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=46.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHcC----------Ccc-cCHHHHhccCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVG----------VEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g----------~~~-~sl~ell~~aDvV~l~~P 292 (628)
.+++|+|||.|.+|..+|..+...|. ++..||..........+. +.. .+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46899999999999999999998886 899999865332211111 111 122356899999999764
No 334
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.16 E-value=0.073 Score=42.73 Aligned_cols=59 Identities=12% Similarity=0.312 Sum_probs=44.0
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC----CCHHHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE----PNQDSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~----~~~~~l~~L~~ 620 (628)
.|.+...|+||.++.++..|.++++||..+...... +.....+.++.+ .+++..++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG--ERALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC--CEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 355677899999999999999999999999987543 266666666443 34456666554
No 335
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.14 E-value=0.067 Score=56.41 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.3
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 262 (628)
.+.||++.|+|.|.+|++++..|...|.+ |.++++..
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999986 99998864
No 336
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.12 E-value=0.045 Score=57.86 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=62.8
Q ss_pred EEEEecChhHHHHHHHHHcCCC-EEEEECCCCChhHHHHc---------CC----cc-cCHHHHhccCCEEEEcCCCCcc
Q 006864 232 LAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------GV----EL-VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g~----~~-~sl~ell~~aDvV~l~~Plt~~ 296 (628)
|+|||.|.+|..+|..+...|. +|+.+|..........+ +. .. .+. +.++.||+|+++... +.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~-p~ 78 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGI-PR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCC-CC
Confidence 6899999999999999886654 99999987533211111 11 11 244 458999999997742 11
Q ss_pred cccc------------cc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH--hCCCeeEEE
Q 006864 297 TSKI------------FN--DETFAKMKKGVRIVNVARGGVIDEEALVRAL--DSGVVAQAA 342 (628)
Q Consensus 297 t~~l------------i~--~~~l~~mk~gailIN~aRg~~vde~aL~~aL--~~g~i~ga~ 342 (628)
..+. +. ...+....+.+++|+.+-.-=+-...+.+.. ...++.|.+
T Consensus 79 ~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 79 KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 1111 10 1223344567788887743333333444432 223566655
No 337
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.10 E-value=0.37 Score=51.96 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=63.4
Q ss_pred eecCCeEEEEecC--hhHHHHHHHHHcCCCEEEEECCCC--Chh----H----HHHcCCc--c-cCHHHHhccCCEEEEc
Q 006864 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD----K----ARAVGVE--L-VSFDQALATADFISLH 290 (628)
Q Consensus 226 ~l~GktiGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~--~~~----~----a~~~g~~--~-~sl~ell~~aDvV~l~ 290 (628)
.+.|++|+++|-+ ++..+++..+..+|++|.+..|.. +.+ . ++..|.. . .++++.++.||+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 789999999999999999887753 211 1 1223432 2 4899999999999885
Q ss_pred CC----CCcc---------ccccccHHHHhcC-CCCcEEEEcC
Q 006864 291 MP----LNPT---------TSKIFNDETFAKM-KKGVRIVNVA 319 (628)
Q Consensus 291 ~P----lt~~---------t~~li~~~~l~~m-k~gailIN~a 319 (628)
.= ...+ -...++.+.++.. |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 31 0000 1233566666664 6777777664
No 338
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.10 E-value=0.045 Score=59.67 Aligned_cols=61 Identities=26% Similarity=0.392 Sum_probs=45.1
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcC----Cccc---CHHHHhccCCEEEE
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG----VELV---SFDQALATADFISL 289 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g----~~~~---sl~ell~~aDvV~l 289 (628)
.++|||||-|..|+.++..++.+|++|+++|+........-.. ..+. .+.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 3799999999999999999999999999999875321111111 1122 36778899999854
No 339
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.09 E-value=0.048 Score=61.72 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=69.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh---hHHHHc--CCccc--C-HHHHhccCCEEEEc--CCCC--
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARAV--GVELV--S-FDQALATADFISLH--MPLN-- 294 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~--g~~~~--s-l~ell~~aDvV~l~--~Plt-- 294 (628)
+.++++.|+|+|..|.++|+.|+..|.+|.++|..... ....+. |+... + ..+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 56889999999999999999999999999999975422 112233 33322 1 23556789999986 4432
Q ss_pred ---cc-------ccccccHH-HHh-cC--------CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 295 ---PT-------TSKIFNDE-TFA-KM--------KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 295 ---~~-------t~~li~~~-~l~-~m--------k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
|+ ...++.+- .+. .+ ++-.+-|-=+-|+.--..-|...|+.
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~ 145 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCER 145 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 11 11223222 211 12 12345555567888888878888865
No 340
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.06 E-value=0.089 Score=60.19 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=35.3
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
+..+.||++.|+|.|.+|++++..|...|++|+++++..
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 446789999999999999999999999999999999863
No 341
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.05 E-value=0.05 Score=60.40 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=48.6
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHH-cCCcc--------cCHHHH-hccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-VGVEL--------VSFDQA-LATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~g~~~--------~sl~el-l~~aDvV~l~~Plt 294 (628)
+++.|+|+|.+|+.+|+.|...|++|+++|+.... +..++ .++.. ..++++ +.++|.|+++++-.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 47899999999999999999999999999886422 22222 34322 135566 78999999998843
No 342
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.04 E-value=0.14 Score=54.68 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=65.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhH--HHHc-------C---Ccc-cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------G---VEL-VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~-------g---~~~-~sl~ell~~aDvV~l~~Plt 294 (628)
.+|+|||.|.+|..+|..|...| -++..||....... +.++ . +.. .+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 58999999999999999987655 47999997653221 1111 0 111 24554 89999999965432
Q ss_pred --c-cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHH--HhCCCeeEE
Q 006864 295 --P-TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVIDEEALVRA--LDSGVVAQA 341 (628)
Q Consensus 295 --~-~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~ga 341 (628)
+ +++. ++ |. +.+....+.+++++++-.-=+....+.+. +...++.|.
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEec
Confidence 1 2331 11 11 23444577899999983222222333333 334465555
No 343
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.04 E-value=0.042 Score=58.43 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=46.2
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhH--HHHcC-Cc---------ccCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAVG-VE---------LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~g-~~---------~~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.+|..+|..|...| .+|..+|+...... +.++. .. ..+. +.++.||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 37999999999999999998888 58999998653211 11111 11 0134 5689999999999864
No 344
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.02 E-value=0.06 Score=48.06 Aligned_cols=84 Identities=20% Similarity=0.459 Sum_probs=55.2
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-----C---HHH-HhccCCEEEEcCCCCccccccc
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----S---FDQ-ALATADFISLHMPLNPTTSKIF 301 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-----s---l~e-ll~~aDvV~l~~Plt~~t~~li 301 (628)
+-|+|+|.+|+.+++.|+..+.+|++.|... ..+.+.+.|+..+ + |++ -+.+||.|++..+-. ..++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d--~~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD--EENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH--HHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH--HHHHH
Confidence 4689999999999999999777999998775 2344555665432 2 222 357899999998833 23333
Q ss_pred cHHHHhcCCCCcEEEE
Q 006864 302 NDETFAKMKKGVRIVN 317 (628)
Q Consensus 302 ~~~~l~~mk~gailIN 317 (628)
-...++.+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3444455555555553
No 345
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.01 E-value=0.037 Score=58.12 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=49.2
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcC----Cccc----CHHHHhccCCEEEEcCCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVG----VELV----SFDQALATADFISLHMPLN 294 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g----~~~~----sl~ell~~aDvV~l~~Plt 294 (628)
.+.||++.|||.|..|++++..|...|+ +|.+++|..... .+...+ +... ++.+.+.++|+|+.++|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 3678999999999999999999999997 699999874221 122211 1111 2335567889999998864
No 346
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.00 E-value=0.051 Score=57.69 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=45.4
Q ss_pred CeEEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhH--HHHc-------CC--cc-cCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------GV--EL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~-------g~--~~-~sl~ell~~aDvV~l~~Pl 293 (628)
++|+|||.|.+|+.+|..|...| .+|..+|+...... +.++ +. .. ..-.+.+++||+|+++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 47999999999999999999888 48999998653322 1111 11 11 1223457899999998875
No 347
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.99 E-value=0.97 Score=53.73 Aligned_cols=176 Identities=19% Similarity=0.165 Sum_probs=115.6
Q ss_pred cCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC-
Q 006864 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM- 253 (628)
Q Consensus 175 ~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~- 253 (628)
..|+|.|.-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.|...|+
T Consensus 152 ~~ip~f~DD~---~GTa~v~lA~l~na~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 152 MDIPVFHDDQ---HGTAIISAAALLNALE------------------LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 4799999832 2344456666776666 24567888999999999999999999999998
Q ss_pred --EEEEECCCC--Ch------hHHHH-c--CCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 254 --NVIAHDPYA--PA------DKARA-V--GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 254 --~V~~~d~~~--~~------~~a~~-~--g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
+++.+|..- .. ...+. + .-...+|.|+++.+|+++=. . +.+.+.++.++.|.+..+|.=.+.
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN 285 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALAN 285 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecCC
Confidence 788888541 11 11111 1 11234899999999988653 2 258999999999999999999998
Q ss_pred Cchh-cHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHHH
Q 006864 321 GGVI-DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGA---------STKEAQEGVAIEIAEA 387 (628)
Q Consensus 321 g~~v-de~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~---------~T~ea~~~~~~~~~~~ 387 (628)
...- ..+..+++ ..|.|.+.|- ...| =+..|+++-|-++- -|.+.+...+..+++.
T Consensus 286 P~~E~~p~~a~~~-~~~~i~atGr---s~~p-------nQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~ 351 (752)
T PRK07232 286 PDPEITPEEAKAV-RPDAIIATGR---SDYP-------NQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAEL 351 (752)
T ss_pred CCccCCHHHHHHh-cCCEEEEECC---cCCC-------CcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhh
Confidence 7653 22332332 2245655551 1112 14468888887653 3556555555544443
No 348
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.94 E-value=0.19 Score=55.79 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=71.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-----hHHHHcCCccc---CHHHHhcc-CCEEEEcCCCCcc
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-----DKARAVGVELV---SFDQALAT-ADFISLHMPLNPT 296 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~g~~~~---sl~ell~~-aDvV~l~~Plt~~ 296 (628)
++.||++.|+|.|.+|.++|+.|+..|++|.++|..... ....+.|+... ...+++.. +|+|+..--..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367899999999999999999999999999999965311 22234465432 23344554 8988775522221
Q ss_pred c----------cccccHHHH-hcC-CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 T----------SKIFNDETF-AKM-KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t----------~~li~~~~l-~~m-k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
. ..++.+.+| ..+ +...+-|--+.|+.--.+-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 1 122333333 233 33455566678888888888888865
No 349
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.87 E-value=0.11 Score=54.98 Aligned_cols=70 Identities=23% Similarity=0.384 Sum_probs=48.9
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCC-hhHH----HHcC------CcccCHH------HHhccCCE
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKA----RAVG------VELVSFD------QALATADF 286 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a----~~~g------~~~~sl~------ell~~aDv 286 (628)
..+.||++.|+|.|..+++++..|...|. +|.+++|... .+++ ...+ +...+++ +.+.++|+
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence 45788999999999999999999988886 7999998742 2222 1111 1122332 34567889
Q ss_pred EEEcCCCC
Q 006864 287 ISLHMPLN 294 (628)
Q Consensus 287 V~l~~Plt 294 (628)
|+.++|+-
T Consensus 200 vINaTp~G 207 (288)
T PRK12749 200 LTNGTKVG 207 (288)
T ss_pred EEECCCCC
Confidence 98888853
No 350
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=94.86 E-value=0.6 Score=53.21 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=46.7
Q ss_pred eecCCeEEEEec---ChhHHHHHHHHHcCC-CEEEEECCCC---Chh---HHHHcCCc--c-cCHHHHhccCCE
Q 006864 226 SLVGKTLAVMGF---GKVGSEVARRAKGLG-MNVIAHDPYA---PAD---KARAVGVE--L-VSFDQALATADF 286 (628)
Q Consensus 226 ~l~GktiGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~~---~a~~~g~~--~-~sl~ell~~aDv 286 (628)
.+.|++|+++|= |++..+++..+..|| |+|....|.. +.+ .+++.|.. . .++++.+++||+
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 477999999998 689999999999998 9999887743 222 23344543 2 489999999995
No 351
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.84 E-value=0.08 Score=57.67 Aligned_cols=66 Identities=36% Similarity=0.499 Sum_probs=52.4
Q ss_pred ecCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHc-CCccc-CHHHHhccCCEEEEcCC
Q 006864 227 LVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAV-GVELV-SFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-g~~~~-sl~ell~~aDvV~l~~P 292 (628)
|.|||+||+|+- .--..++++|+..|.+|.+|||-......... ++.+. ++++.+++||+++++..
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 999999999984 34678999999999999999998644333222 24444 79999999999999764
No 352
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.84 E-value=0.059 Score=58.20 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=33.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999999997 78888875
No 353
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.79 E-value=0.11 Score=43.21 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=44.2
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC-----CC-CHHHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-----EP-NQDSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~-----~~-~~~~l~~L~~ 620 (628)
+=+.-+|+||.++.|+..|.++|+||-..++.+. ++.++.++.+.+ +. +++-+++|++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHH
Confidence 3345689999999999999999999999999854 778888887632 12 4455555543
No 354
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.79 E-value=0.066 Score=39.32 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=41.4
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC-CCHHHHHHH
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEI 618 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~-~~~~~l~~L 618 (628)
+..+|+||.+.++.+.|.++++||..+........+..-+.+.++.. ..+.++++|
T Consensus 3 i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 3 VSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 55678999999999999999999999998765444556666666664 333444443
No 355
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.77 E-value=0.066 Score=60.31 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=71.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHcCCccc---CHHHHhccCCEEEEcC--CC-Ccc
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGVELV---SFDQALATADFISLHM--PL-NPT 296 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~---sl~ell~~aDvV~l~~--Pl-t~~ 296 (628)
..+.+|++.|+|+|..|+++|+.|...|++|.++|+..... .....|++.. ...+.+.++|+|+..- |. +++
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~ 90 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPL 90 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHH
Confidence 35788999999999999999999999999999999754222 1234576543 2234567899987753 22 221
Q ss_pred c-------cccccHHHHhc-------C--CCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 T-------SKIFNDETFAK-------M--KKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t-------~~li~~~~l~~-------m--k~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
. ..++.+-.+.. + +...+-|-=+-|+.--..-|...|+.
T Consensus 91 ~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~ 145 (473)
T PRK00141 91 LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQE 145 (473)
T ss_pred HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 1 12233333321 1 11244455567888888888888875
No 356
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.77 E-value=0.1 Score=55.37 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=58.5
Q ss_pred CCeEEEEecChhHHHHHHHHHc-CCCEEEE-ECCCCC---hhHHHHcCCcc--cCHHHHhc-----cCCEEEEcCCCCcc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAP---ADKARAVGVEL--VSFDQALA-----TADFISLHMPLNPT 296 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~g~~~--~sl~ell~-----~aDvV~l~~Plt~~ 296 (628)
..++||||.|+||+..+..+.. -++++.+ +|+... ...+++.|+.. .+++++++ +.|+|+.++|-.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 3589999999999997777764 4577765 565442 24567778764 37899985 589999999832
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~a 319 (628)
. | -+......+.|..+|+-.
T Consensus 82 ~-H--~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 A-H--VRHAAKLREAGIRAIDLT 101 (302)
T ss_pred H-H--HHHHHHHHHcCCeEEECC
Confidence 1 1 122223357788888865
No 357
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.75 E-value=0.057 Score=60.20 Aligned_cols=122 Identities=24% Similarity=0.374 Sum_probs=77.0
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh-----HHHHcCCccc---CHHHHhccCCEEEEcCCCCcccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-----KARAVGVELV---SFDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~ 298 (628)
..||+|.|+|+|.-|.++|+.|+..|++|.++|...... .....+++.. ...+.+.++|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 348999999999999999999999999999999655321 1112344332 122678889999885 2222222
Q ss_pred cc-----------ccH-HHHhcC--CCCcEEEEcCCCchhcHHHHHHHHhCC--------CeeEEEeeccCCC
Q 006864 299 KI-----------FND-ETFAKM--KKGVRIVNVARGGVIDEEALVRALDSG--------VVAQAALDVFTEE 349 (628)
Q Consensus 299 ~l-----------i~~-~~l~~m--k~gailIN~aRg~~vde~aL~~aL~~g--------~i~ga~lDV~~~E 349 (628)
.+ +++ +.|-+. +.-.+-|.=.-|+.--..-+...|++. .|...++|+...+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 22 232 223332 122444555668877777777777653 3444678887764
No 358
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.75 E-value=0.13 Score=57.15 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=64.5
Q ss_pred eeeecCCeEEEEec----------ChhHHHHHHHHHcCCCEEEEECCCCChhHH-HHcCCcccCHHHHhccCCEEEEcCC
Q 006864 224 GVSLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKA-RAVGVELVSFDQALATADFISLHMP 292 (628)
Q Consensus 224 g~~l~GktiGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~g~~~~sl~ell~~aDvV~l~~P 292 (628)
+..+.|++|+|+|+ ..-+..+++.|+..|.+|.+|||+...+.. +..+....+ ...+..||.|++++.
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~-~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS-EVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch-hhhhcCCCEEEEccC
Confidence 45689999999999 556889999999999999999998643322 223322111 224678999999987
Q ss_pred CCccccccccHHHHh-cCCCCcEEEEcCCCch
Q 006864 293 LNPTTSKIFNDETFA-KMKKGVRIVNVARGGV 323 (628)
Q Consensus 293 lt~~t~~li~~~~l~-~mk~gailIN~aRg~~ 323 (628)
- ++-+. ++-+.+. .||...+|+|+ |+-+
T Consensus 388 h-~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 H-QQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred C-HHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 3 33332 4544444 45545688884 5444
No 359
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.64 E-value=0.11 Score=55.22 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=56.5
Q ss_pred EEEEecChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHcCC----------cc--cCHHHHhccCCEEEEcCCCCccc
Q 006864 232 LAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAVGV----------EL--VSFDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g~----------~~--~sl~ell~~aDvV~l~~Plt~~t 297 (628)
|+|||.|.+|..+|..+...| .++..+|..........+.. .. .+-.+.++.||+|+++..... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~-~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPR-K 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCC-C
Confidence 589999999999999998878 58999998754322211111 11 111468899999999987432 2
Q ss_pred cccc-------c-------HHHHhcCCCCcEEEEcC
Q 006864 298 SKIF-------N-------DETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li-------~-------~~~l~~mk~gailIN~a 319 (628)
.++- | ...+....|.+++++.+
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2210 1 12233445788999987
No 360
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.63 E-value=0.073 Score=59.62 Aligned_cols=110 Identities=17% Similarity=0.242 Sum_probs=72.3
Q ss_pred ecCCeEEEEecChhHHH-HHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEcCCCCcccc---
Q 006864 227 LVGKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS--- 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~--- 298 (628)
..+|++.|+|+|..|.+ +|+.|+..|++|.++|..... ....+.|+... .-.+.+..+|+|++.--..+...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 45789999999999999 799999999999999976532 22234466542 12345678999877532222211
Q ss_pred -------ccccHHHH-hc-CC-CCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 299 -------KIFNDETF-AK-MK-KGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 -------~li~~~~l-~~-mk-~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.++++-+| .. ++ .-.+-|-=+.|+.--..-+...|+..
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 23444333 33 33 23555555789988888888888653
No 361
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.58 E-value=0.17 Score=54.75 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=64.4
Q ss_pred eEEEEecChhHHHHHHHHHcC----------CCEEEE-ECCC--------CChhHH----HHcCC--------cccCHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGL----------GMNVIA-HDPY--------APADKA----RAVGV--------ELVSFDQ 279 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~----------G~~V~~-~d~~--------~~~~~a----~~~g~--------~~~sl~e 279 (628)
+|||+|+|.||+.+++.++.. +++|.+ .|+. .+.+.+ ...+. ...++++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence 799999999999999998744 577665 4542 122211 11121 1137888
Q ss_pred Hhc--cCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhCCCe
Q 006864 280 ALA--TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSGVV 338 (628)
Q Consensus 280 ll~--~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v-de~aL~~aL~~g~i 338 (628)
++. +.|+|+.++|-...+...--.-....|+.|.-+|-..-+.+. ..+.|.++.++...
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 884 689999999955433222112234556777777665433332 45667777665433
No 362
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.57 E-value=0.11 Score=41.97 Aligned_cols=59 Identities=14% Similarity=0.284 Sum_probs=43.1
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEe----CCCCCHHHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV----DEEPNQDSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~v----D~~~~~~~l~~L~~ 620 (628)
.+.+...|+||.++.|+..|.++++||..+++... ++.++..+.+ ..+.+.+-+++|++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~~~~~~~~~~~~~i~~ 64 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 35567899999999999999999999999998643 2356555544 23345566666654
No 363
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.55 E-value=0.042 Score=55.85 Aligned_cols=91 Identities=24% Similarity=0.252 Sum_probs=58.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-Ch-hH-------HHHcC-----------------Cc----
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PA-DK-------ARAVG-----------------VE---- 273 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-~~-------a~~~g-----------------~~---- 273 (628)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.. .. .. ..+.| ++
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46889999999999999999999999997 778887542 00 00 01111 11
Q ss_pred --cc---CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 274 --LV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 274 --~~---sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.. ++++++.++|+|+.|+. +.+++.++++...+ .+.-+|.++
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 01 23466777888877766 55566666655443 244566654
No 364
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=94.55 E-value=0.11 Score=43.82 Aligned_cols=61 Identities=15% Similarity=0.243 Sum_probs=40.8
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeec-CccEEEEEEeCCCC-CH---HHHHHHhc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEP-NQ---DSLKEIGK 620 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~-gg~Al~~i~vD~~~-~~---~~l~~L~~ 620 (628)
.+.+..+|+||.++.+..++++++|||..+....... .+.-...++++... .+ ++++.|++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3556678999999999999999999999997543322 22334455566542 23 35555554
No 365
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=94.54 E-value=0.99 Score=49.71 Aligned_cols=183 Identities=20% Similarity=0.192 Sum_probs=115.1
Q ss_pred hcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC
Q 006864 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM 253 (628)
Q Consensus 174 ~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~ 253 (628)
+..|+|.|.-- .-+|=-+++-++..+| ..|..|+..+|.+.|.|.-|-.+++.+++.|+
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk------------------~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALK------------------LTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHH------------------HhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 45688887743 2344456666776666 45788999999999999999999999999998
Q ss_pred ---EEEEECCCC--ChhHH----HHcCC--------cccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 254 ---NVIAHDPYA--PADKA----RAVGV--------ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 254 ---~V~~~d~~~--~~~~a----~~~g~--------~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
+|+.+|+.- ...+. .+..+ .... ++.+..+|+++-+- ..+.+.++.++.|.+..++.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEEe
Confidence 588888652 11110 00000 1111 55788999986543 23899999999999999999
Q ss_pred EcCCCchhcHHHHHHHHhCC-CeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHH
Q 006864 317 NVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA-----QEGVAIEIAEAVVG 390 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea-----~~~~~~~~~~~i~~ 390 (628)
=.+....--.-..+..-.+| .|.+.|-- +.|- +..|+++-|.++-.--.+ -+.|-..+++.|.+
T Consensus 298 alaNP~pEi~Pe~a~~~~~~aaivaTGrs---------d~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 298 ALANPTPEITPEDAKEWGDGAAIVATGRS---------DYPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred ecCCCCccCCHHHHhhcCCCCEEEEeCCC---------CCcc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 88876532222222222222 45444322 1122 678999999987432211 13344555666666
Q ss_pred HHc
Q 006864 391 ALR 393 (628)
Q Consensus 391 ~l~ 393 (628)
+..
T Consensus 368 ~~~ 370 (432)
T COG0281 368 LAR 370 (432)
T ss_pred hcc
Confidence 554
No 366
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=94.47 E-value=0.045 Score=54.30 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=37.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeec--CccEEEEEEe
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR--RNHGIMAIGV 606 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~--gg~Al~~i~v 606 (628)
+.+-+.-.|+||++..|+..|++++|||.+++...... .+..++.+.+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~ 145 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI 145 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE
Confidence 44556679999999999999999999999999976542 4554444443
No 367
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.46 E-value=0.046 Score=51.34 Aligned_cols=80 Identities=31% Similarity=0.452 Sum_probs=49.8
Q ss_pred EEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCC
Q 006864 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKK 311 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ 311 (628)
+-|+|-|.+|+++++.++.+|++|.++|++.. .+..++-+ .+.+.. + + .+.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~-~~~~~~-~---~--~~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEV-ICIPPD-D---I--LEDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEE-ECSHHH-H---H--HHHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCcc-EecChH-H---H--Hhcc-CCCC
Confidence 46899999999999999999999999998732 01233432 222211 0 0 0112 3566
Q ss_pred CcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 312 GVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 312 gailIN~aRg~~vde~aL~~aL~~g 336 (628)
+..+| +.++.-.|.++|.++|+.+
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALASP 80 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTSS
T ss_pred CeEEE-EcCCchhHHHHHHHHHcCC
Confidence 66766 8899999999999999884
No 368
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.43 E-value=0.13 Score=46.80 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=63.0
Q ss_pred CeEEEEe----cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEcCCCCccccccccHH
Q 006864 230 KTLAVMG----FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 230 ktiGIIG----lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~-~~sl~ell~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+++||| -|..|..+.+.|++.|++|+..+|.... -.|.. +.+++|.-...|++++++|-. .+..++ +
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v--~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIV--D 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHH--H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHH--H
Confidence 6899999 7899999999999999999999987522 12443 347888447899999999922 233333 2
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCee
Q 006864 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ 339 (628)
.+..+....+++..+ ..++.+.+.+++..+.
T Consensus 74 ~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 233356778888877 5666677777766553
No 369
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=94.41 E-value=0.18 Score=53.25 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=56.0
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEEE-ECCCCC---hhHHHHcCCcc--cCHHHHhc--cCCEEEEcCCCCcccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAP---ADKARAVGVEL--VSFDQALA--TADFISLHMPLNPTTSKI 300 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~g~~~--~sl~ell~--~aDvV~l~~Plt~~t~~l 300 (628)
.++||||.|+||+..+..+.. -++++.+ +|+... ...+++.|+.. .+.+++++ +.|+|++++|-. +.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~--~H-- 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK--AH-- 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH--HH--
Confidence 379999999999988776664 4577765 565542 24566778753 37888886 578899999833 22
Q ss_pred ccHHHHhcCCCCcEEEEc
Q 006864 301 FNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 301 i~~~~l~~mk~gailIN~ 318 (628)
-+.....++.|..+++-
T Consensus 78 -~e~a~~al~aGk~VIde 94 (285)
T TIGR03215 78 -ARHARLLAELGKIVIDL 94 (285)
T ss_pred -HHHHHHHHHcCCEEEEC
Confidence 12223335667777654
No 370
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.41 E-value=0.05 Score=57.41 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=41.1
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
..+-+.-+|+||+++.|++.|+++|+||.+++..+..-+|.-.|.+.++-
T Consensus 7 ~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~ 56 (286)
T PRK06027 7 YVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG 56 (286)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe
Confidence 45566779999999999999999999999999988555566666666665
No 371
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=94.38 E-value=0.73 Score=50.84 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=48.9
Q ss_pred eecCCeEEEEec-----C---hhHHHHHHHHHcCCCEEEEECCCC---Chh---H----HHHcCC--cc-cCHHHHhccC
Q 006864 226 SLVGKTLAVMGF-----G---KVGSEVARRAKGLGMNVIAHDPYA---PAD---K----ARAVGV--EL-VSFDQALATA 284 (628)
Q Consensus 226 ~l~GktiGIIGl-----G---~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~----a~~~g~--~~-~sl~ell~~a 284 (628)
.+.|+||+|+|- | ++..+++..+..+||+|.+..|.. .++ . +++.|. .. .++++.++.|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 566899999999999999988753 122 1 233453 22 3899999999
Q ss_pred CEEEEc
Q 006864 285 DFISLH 290 (628)
Q Consensus 285 DvV~l~ 290 (628)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999885
No 372
>PRK11579 putative oxidoreductase; Provisional
Probab=94.33 E-value=0.098 Score=56.32 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=43.7
Q ss_pred CeEEEEecChhHHH-HHHHHHcC-CCEEEE-ECCCCChhHHHHc-CCc-ccCHHHHhc--cCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAPADKARAV-GVE-LVSFDQALA--TADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~-vA~~l~~~-G~~V~~-~d~~~~~~~a~~~-g~~-~~sl~ell~--~aDvV~l~~Pl 293 (628)
-++||||+|.||+. .+..++.. ++++.+ +|+.... ..... +.. +.+++++++ +.|+|++++|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK-VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH-HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 38999999999985 56666544 688875 6765322 12223 232 348999996 57999999993
No 373
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.31 E-value=0.16 Score=54.25 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=37.1
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|+++.|+|.|.+|...++.++.+|. +|++.|... ..+.++++|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 58999999999999999999999998 688888664 33455666653
No 374
>PRK12862 malic enzyme; Reviewed
Probab=94.29 E-value=1.5 Score=52.41 Aligned_cols=172 Identities=18% Similarity=0.120 Sum_probs=115.3
Q ss_pred CceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC--
Q 006864 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-- 253 (628)
Q Consensus 176 GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-- 253 (628)
+|+|.|.-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~DD~---~GTa~v~la~l~~a~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~ 219 (763)
T PRK12862 161 KIPVFHDDQ---HGTAIIVAAALLNGLK------------------LVGKDIEDVKLVASGAGAAALACLDLLVSLGVKR 219 (763)
T ss_pred CCceEecCc---ccHHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCc
Confidence 699999843 2344456666776666 24677888999999999999999999999998
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 254 -NVIAHDPYA----------PA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 254 -~V~~~d~~~----------~~---~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+++.+|+.- .. ..++.. ...+|.|+++.+|+++=.- +-+.+.++.++.|.+..+|.=.+
T Consensus 220 ~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifals 292 (763)
T PRK12862 220 ENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALA 292 (763)
T ss_pred ccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCC
Confidence 788888531 11 112211 2348999999999986532 25899999999999999999999
Q ss_pred CCchh-cHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHH
Q 006864 320 RGGVI-DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGA---------STKEAQEGVAIEIAE 386 (628)
Q Consensus 320 Rg~~v-de~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~---------~T~ea~~~~~~~~~~ 386 (628)
....- ..+..+++ ..|.|.+.|-. ..| =+..|+++-|-++- -|.+.+...+..+++
T Consensus 293 NP~~E~~p~~a~~~-~~~~i~atGrs---~~p-------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~ 358 (763)
T PRK12862 293 NPTPEILPEEARAV-RPDAIIATGRS---DYP-------NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAE 358 (763)
T ss_pred CCcccCCHHHHHHh-cCCEEEEECCc---CCC-------CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHh
Confidence 87643 22332333 22456555411 111 24468888887763 355555555554444
No 375
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.26 E-value=0.15 Score=54.07 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=70.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHH-cCCcc------------cCHHHHhccCCEEEEcCCCCc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARA-VGVEL------------VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~-~g~~~------------~sl~ell~~aDvV~l~~Plt~ 295 (628)
++|+|+|.|.||.-+|-+|...|.+|..+++.. ..+...+ .|+.. ..-.+....+|+|++++--.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 579999999999999999999999999998864 2222222 13211 01122346789999988532
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEE
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA 342 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~ 342 (628)
++...+ +.....+.+++.++-+-- ++-.++.+.+.+...++.++.
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQN-Gv~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQN-GLGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeC-CCCCHHHHHHhCCCCcEEEEE
Confidence 222222 233445677887777654 445667777888766665543
No 376
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.26 E-value=0.66 Score=49.89 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=108.9
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-h--HH-HHcCCc---ccCHHHHh---ccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D--KA-RAVGVE---LVSFDQAL---ATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~--~a-~~~g~~---~~sl~ell---~~aDvV~l~~Plt~~t~~ 299 (628)
..||+||++.||+.++......|+.|.+|++..+. + .+ +..|.. ..|+++++ +.-..|++.+---.-. .
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV-D 85 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV-D 85 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH-H
Confidence 46899999999999999999999999999987632 1 11 222322 34788774 5567777766433322 3
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006864 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (628)
Q Consensus 300 li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~~T~ea~~~ 379 (628)
.+-++....|.+|-+|||-+...--|.+.=.+.|....|...+.-|.+.|--+...|- + +-+.+.+++.+
T Consensus 86 ~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-----l-----MpGg~~~Awp~ 155 (487)
T KOG2653|consen 86 QFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-----L-----MPGGSKEAWPH 155 (487)
T ss_pred HHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-----c-----CCCCChHHHHH
Confidence 3346777889999999999988888999989989888877899999998854322221 1 22456777777
Q ss_pred HHHHHHHHHHHHH-cCCCCC
Q 006864 380 VAIEIAEAVVGAL-RGELSA 398 (628)
Q Consensus 380 ~~~~~~~~i~~~l-~g~~~~ 398 (628)
+ +.+.+.|..-. .|++..
T Consensus 156 i-k~ifq~iaakv~~~epCc 174 (487)
T KOG2653|consen 156 I-KDIFQKIAAKVSDGEPCC 174 (487)
T ss_pred H-HHHHHHHHHHhcCCCCCe
Confidence 5 45556664443 344443
No 377
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=94.25 E-value=0.13 Score=57.35 Aligned_cols=160 Identities=15% Similarity=0.030 Sum_probs=86.1
Q ss_pred CeEEEEecChhHHHHHH---HH---HcCCCEEEEECCCCChhH-H--------HHcCC----c-ccCHHHHhccCCEEEE
Q 006864 230 KTLAVMGFGKVGSEVAR---RA---KGLGMNVIAHDPYAPADK-A--------RAVGV----E-LVSFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~---~l---~~~G~~V~~~d~~~~~~~-a--------~~~g~----~-~~sl~ell~~aDvV~l 289 (628)
.+|+|||.|.+|...+. .+ ...|.+|..||+...... . ...+. . ..++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998665 22 333679999998742211 0 11111 1 2378899999999999
Q ss_pred cCCCCcc-----------ccccc---------------------cHHHHhcC---CCCcEEEEcCCCchhcHHHHHHHHh
Q 006864 290 HMPLNPT-----------TSKIF---------------------NDETFAKM---KKGVRIVNVARGGVIDEEALVRALD 334 (628)
Q Consensus 290 ~~Plt~~-----------t~~li---------------------~~~~l~~m---k~gailIN~aRg~~vde~aL~~aL~ 334 (628)
++|.... -++++ -.+..+.+ .|.++++|.+-.--+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 9994110 00000 01222223 2688888887766666666666654
Q ss_pred CCCeeEEEeeccCCCCCCCCCcccc------CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 006864 335 SGVVAQAALDVFTEEPPAKDSKLVQ------HENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRG 394 (628)
Q Consensus 335 ~g~i~ga~lDV~~~EP~~~~~~L~~------~~nvilTPHig~~T~ea~~~~~~~~~~~i~~~l~g 394 (628)
.++.|.+--+.... -.-...+. ...++=-=|++|.+.-.. + ..++...+.+++..
T Consensus 161 -~rviG~c~~~~~~~--~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~-~-G~d~~p~l~~~~~~ 221 (423)
T cd05297 161 -IKTVGLCHGVQGTA--EQLAKLLGEPPEEVDYQVAGINHMAWLLKFEY-N-GEDLYPLLDEWIEE 221 (423)
T ss_pred -CCEEEECCcHHHHH--HHHHHHhCCCHHHeEEEEEeeccHhhhhhheE-C-CcchHHHHHHHHhc
Confidence 44544331111000 00001111 134556667777764222 1 44555566666543
No 378
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.24 E-value=0.11 Score=56.10 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=53.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHcC-CCEEEE-ECCCCChh-HHHHcC-C------cccCHHH-HhccCCEEEEcCCCCccc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAPAD-KARAVG-V------ELVSFDQ-ALATADFISLHMPLNPTT 297 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~-~a~~~g-~------~~~sl~e-ll~~aDvV~l~~Plt~~t 297 (628)
++|+|+|. |.+|+.+++.|... ++++.+ .++....+ .....+ + .+.++++ .+.++|+|++|+|-.. .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 58999996 99999999999877 677755 55332111 111111 1 1223332 4578999999999432 1
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVARG 321 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~aRg 321 (628)
. +-....++.|..+||.+-.
T Consensus 82 ~----~~v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 82 M----DLAPQLLEAGVKVIDLSAD 101 (343)
T ss_pred H----HHHHHHHhCCCEEEECCcc
Confidence 1 1122224679999998743
No 379
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.19 E-value=0.11 Score=54.79 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=39.0
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
..+.+.-+|+||+|+.|++.|+++++||.+++..-...++.=.|.++++-
T Consensus 8 ~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~ 57 (286)
T PRK13011 8 FVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHS 57 (286)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEec
Confidence 45566779999999999999999999999999863334445556667653
No 380
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.15 E-value=0.11 Score=58.49 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=72.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh------hHHHHcCCccc--CHHHHhccCCEEEEcCCCCc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV--SFDQALATADFISLHMPLNP 295 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~ 295 (628)
+..+.|+++.|||.|.+|.++|+.|+..|++|.++|..... ...++.|++.. .-.+....+|+|+++.-..+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 45678999999999999999999999999999999865311 12344566543 11124557999998764433
Q ss_pred ccc----------ccccHHHH--hcCCC----CcEEEEcCCCchhcHHHHHHHHhC
Q 006864 296 TTS----------KIFNDETF--AKMKK----GVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 296 ~t~----------~li~~~~l--~~mk~----gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+. .++++-+| ..+.+ ..+-|-=+.|+.--..-+...|+.
T Consensus 91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 322 12333222 23322 235555567888888877777765
No 381
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=94.09 E-value=0.079 Score=50.85 Aligned_cols=66 Identities=11% Similarity=0.237 Sum_probs=56.9
Q ss_pred EEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCC-CCHHHHHHHhcccCcccc
Q 006864 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~-~~~~~l~~L~~l~~v~~v 627 (628)
-+...++||++..++.+++++|.||.+.|.+-.+.|..++..+++..- ..+.++++++..+.|.++
T Consensus 6 si~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev 72 (218)
T COG1707 6 SIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEV 72 (218)
T ss_pred EEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEe
Confidence 345678999999999999999999999999988888899999998764 456899999998887664
No 382
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.07 E-value=0.7 Score=49.99 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=47.9
Q ss_pred eeecCCeEEEEec---ChhHHHHHHHHH-cCCCEEEEECCCC---Chh---HHHHcCC--cc-cCHHHHhccCCEEEEc
Q 006864 225 VSLVGKTLAVMGF---GKVGSEVARRAK-GLGMNVIAHDPYA---PAD---KARAVGV--EL-VSFDQALATADFISLH 290 (628)
Q Consensus 225 ~~l~GktiGIIGl---G~IG~~vA~~l~-~~G~~V~~~d~~~---~~~---~a~~~g~--~~-~sl~ell~~aDvV~l~ 290 (628)
..+.|+||+++|= +++..+.+..+. -+|++|....|.. +.+ .+++.|. +. .++++.++.||+|..-
T Consensus 155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 3578999999998 578888888766 4499999887753 222 1233343 22 3899999999999883
No 383
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.06 E-value=0.05 Score=51.22 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=57.6
Q ss_pred CeEEEEec-ChhHHHHHHHHHcC--CCEEEEECCCCChhHHHHcCC-----------c-ccCHHHHhccCCEEEEcC--C
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGL--GMNVIAHDPYAPADKARAVGV-----------E-LVSFDQALATADFISLHM--P 292 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g~-----------~-~~sl~ell~~aDvV~l~~--P 292 (628)
.+|+|||. |.+|+.+|..|... +-++..||..........+.. . .....+.+++||+|+++. |
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 47999999 99999999999744 468999998742221111110 0 114678889999999988 3
Q ss_pred CCc-cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006864 293 LNP-TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVID 325 (628)
Q Consensus 293 lt~-~t~~-li--~~-------~~l~~mk~gailIN~aRg~~vd 325 (628)
..+ +++. ++ |. ..+.+..|.++++.++ ..+|
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt--NPvd 122 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT--NPVD 122 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S--SSHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC--CcHH
Confidence 333 1221 11 11 2233445777888874 3455
No 384
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.02 E-value=0.088 Score=60.52 Aligned_cols=86 Identities=19% Similarity=0.385 Sum_probs=56.7
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----C---HHH-HhccCCEEEEcCCCCccccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----S---FDQ-ALATADFISLHMPLNPTTSK 299 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----s---l~e-ll~~aDvV~l~~Plt~~t~~ 299 (628)
-.+-|+|+|++|+.+|+.|+..|.+|++.|.+.. .+..++.|+..+ + |++ -+++||.++++++-.+++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 4688999999999999999999999999998752 344555565422 2 222 24689989888885554433
Q ss_pred cccHHHHhcCCCCcEEEE
Q 006864 300 IFNDETFAKMKKGVRIVN 317 (628)
Q Consensus 300 li~~~~l~~mk~gailIN 317 (628)
++-. ...+.+...+|-
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 3322 222344545543
No 385
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.96 E-value=0.14 Score=42.39 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=42.6
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeec--CccEEEEEEeCCCC-CH---HHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR--RNHGIMAIGVDEEP-NQ---DSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~--gg~Al~~i~vD~~~-~~---~~l~~L~~ 620 (628)
+++.-+|+||.++.|.+.++++++||..++ +|..+ .+.....++++... .. ++++.|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~-Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIE-SRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEE-eeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 455567999999999999999999999994 55333 44556667777642 22 46666665
No 386
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.96 E-value=0.13 Score=55.17 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=36.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC----ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA----PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~----~~~~a~~~g~~ 273 (628)
.|+++.|+|.|.||...++.++..|.+|++.++.. ..+.++++|+.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 57899999999999999999999999999998732 22334555654
No 387
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.95 E-value=0.12 Score=57.48 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=70.1
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh---HHHH--cCCccc--C-HHHHhccCCEEEEcCCCCcccc
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD---KARA--VGVELV--S-FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~--~g~~~~--s-l~ell~~aDvV~l~~Plt~~t~ 298 (628)
+.+|++.|+|.|.+|.++|+.|...|++|.++|...... ..+. .|+... . -+..+..+|+|+..--..+...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568999999999999999999999999999999764321 1111 255432 1 2345578999987543333211
Q ss_pred ----------ccccH-HHHhc-CC---CCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 ----------KIFND-ETFAK-MK---KGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 ----------~li~~-~~l~~-mk---~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++.+ +.+.. ++ .-.+-|-=+.|+.--..-+...|+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 12222 22223 32 2345555567888888888888865
No 388
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=93.94 E-value=0.09 Score=54.19 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=48.5
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCCCCC
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN 611 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~~~~ 611 (628)
+...|.+..+|+||++++|++.|.++|.||-.-.-+.+..+|.=+|.++++.+-.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC
Confidence 4567888999999999999999999999999999887777888899999977554
No 389
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.85 E-value=0.18 Score=53.19 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=62.4
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcC---C--cccCHHHH--hccCCEEEEcCCCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVG---V--ELVSFDQA--LATADFISLHMPLN 294 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g---~--~~~sl~el--l~~aDvV~l~~Plt 294 (628)
..+.|+++.|+|.|-.+++++..|+..|. +|.+++|..... .++..+ . ....+.++ +.++|+|+.++|+.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45679999999999999999999999995 799999875321 121222 1 12222222 22699999999965
Q ss_pred cccc---ccccHHHHhcCCCCcEEEEcCCCc
Q 006864 295 PTTS---KIFNDETFAKMKKGVRIVNVARGG 322 (628)
Q Consensus 295 ~~t~---~li~~~~l~~mk~gailIN~aRg~ 322 (628)
-.-. .+++ ...++++.++.|+--..
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P 229 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNP 229 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCC
Confidence 3322 1233 44467777777765433
No 390
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.76 E-value=0.21 Score=41.30 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=40.6
Q ss_pred cEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC
Q 006864 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (628)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~ 608 (628)
+.+++..+|+||+.+.+++.|..+++||-..++... +.|.++-.+.+.+
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d 50 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTG 50 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEec
Confidence 467788889999999999999999999999999865 4566766666643
No 391
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.76 E-value=0.16 Score=51.71 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=60.8
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHH--Hc-CCccc--CH-HHHhccCCEEEEcCCCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR--AV-GVELV--SF-DQALATADFISLHMPLNPTT 297 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~--~~-g~~~~--sl-~ell~~aDvV~l~~Plt~~t 297 (628)
-.++.|+++.|||-|.++..=++.|..+|.+|.++.|....+... .. .+++. ++ .+.+..+++|+.++.
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATd----- 94 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATD----- 94 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCC-----
Confidence 346779999999999999998899999999999999987554321 11 12221 11 234577888888764
Q ss_pred cccccHHHHhcCCCCcEEEEc
Q 006864 298 SKIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~ 318 (628)
..-+|+.....++.-.+++|+
T Consensus 95 D~~vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 95 DEKLNNKIRKHCDRLYKLYID 115 (223)
T ss_pred CHHHHHHHHHHHHHcCCeEEE
Confidence 223466666656554556665
No 392
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.73 E-value=0.14 Score=55.45 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46889999999999999999999999998 88888865
No 393
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.67 E-value=0.14 Score=59.65 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=61.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----C---HHH-HhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----S---FDQ-ALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----s---l~e-ll~~aDvV~l~~Plt~~t~ 298 (628)
...+-|+|+|++|+.+++.|+..|.++++.|.+.. .+..++.|.... + |++ -+++||.++++++-.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 35799999999999999999999999999997752 344555665422 2 222 2678999999998554433
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006864 299 KIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~aR 320 (628)
.+ -...+++.|...++--+|
T Consensus 480 ~i--~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KI--VELCQQHFPHLHILARAR 499 (601)
T ss_pred HH--HHHHHHHCCCCeEEEEeC
Confidence 32 233444556666665544
No 394
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=93.57 E-value=1.1 Score=48.32 Aligned_cols=99 Identities=22% Similarity=0.157 Sum_probs=63.5
Q ss_pred HHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeee-cCCeEEEEecC-------hhHH
Q 006864 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSL-VGKTLAVMGFG-------KVGS 242 (628)
Q Consensus 171 aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l-~GktiGIIGlG-------~IG~ 242 (628)
.+..-+|+|+|+.+. ..++- +++=++.+.++ .| .+ .|++|+|+|.| ++..
T Consensus 132 ~a~~s~vPVINa~~~-~HPtQ--aLaDl~Ti~e~------------------~g-~~~~g~ki~i~~~gd~~~~~~~v~~ 189 (335)
T PRK04523 132 FAKYSTVPVINMETI-THPCQ--ELAHALALQEH------------------FG-TTLRGKKYVLTWTYHPKPLNTAVAN 189 (335)
T ss_pred HHHhCCCCEEECCCC-CChHH--HHHHHHHHHHH------------------hC-CccCCCEEEEEEeccCcccccHHHH
Confidence 344567999999665 33331 22223333331 12 25 68999877643 7888
Q ss_pred HHHHHHHcCCCEEEEECC-C---CChhH-------HHHcCC--cc-cCHHHHhccCCEEEEcC
Q 006864 243 EVARRAKGLGMNVIAHDP-Y---APADK-------ARAVGV--EL-VSFDQALATADFISLHM 291 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~-~---~~~~~-------a~~~g~--~~-~sl~ell~~aDvV~l~~ 291 (628)
+++..+..||++|.+..| . .+.+. +...|. .. .++++.++.||+|..-.
T Consensus 190 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 190 SALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS 252 (335)
T ss_pred HHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence 999999999999999988 3 22221 123343 22 38999999999998743
No 395
>PRK05086 malate dehydrogenase; Provisional
Probab=93.52 E-value=0.37 Score=51.43 Aligned_cols=91 Identities=20% Similarity=0.170 Sum_probs=55.6
Q ss_pred CeEEEEec-ChhHHHHHHHHH---cCCCEEEEECCCCChh-HHHHc---C----Cc---ccCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGF-GKVGSEVARRAK---GLGMNVIAHDPYAPAD-KARAV---G----VE---LVSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~-~a~~~---g----~~---~~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||. |.||+.+|..++ ..+.++..+|+..... .+.++ + +. ..++.+.++.||+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 999999998874 3456888898653210 01111 1 11 125668889999999987642
Q ss_pred cc---ccc-cc------cHH---HHhcCCCCcEEEEcCC
Q 006864 295 PT---TSK-IF------NDE---TFAKMKKGVRIVNVAR 320 (628)
Q Consensus 295 ~~---t~~-li------~~~---~l~~mk~gailIN~aR 320 (628)
.. ++. ++ -++ .+....+.+++++++-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 111 11 122 2333456788888864
No 396
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.51 E-value=0.15 Score=57.41 Aligned_cols=109 Identities=20% Similarity=0.233 Sum_probs=69.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC--hhHHHHc--CCccc---CHHHHhccCCEEEEcCCCCccc--
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAV--GVELV---SFDQALATADFISLHMPLNPTT-- 297 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~--g~~~~---sl~ell~~aDvV~l~~Plt~~t-- 297 (628)
+.||+++|+|+|.-|.++|+.|+..|++|+++|.... .....++ +.... ...+.+.++|+|+..--..+..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 4689999999999999999999999999999996431 1111111 22221 1235567899997754222221
Q ss_pred --------cccccHHHH--hc-CC-----CCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 --------SKIFNDETF--AK-MK-----KGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 --------~~li~~~~l--~~-mk-----~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
..++++-+| .. ++ ...+-|-=+.|+.--..-+...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 123444443 32 32 1345566577888888888888865
No 397
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.51 E-value=0.19 Score=56.47 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=66.5
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHH--HHc-CCccc--C-HHHHhccCCEEEEcCCCCccc
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--RAV-GVELV--S-FDQALATADFISLHMPLNPTT 297 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~-g~~~~--s-l~ell~~aDvV~l~~Plt~~t 297 (628)
-.+|.||++.|||-|.++..=++.|..+|++|.++.|....+.. ... .+++. + .++.++.+++|+.++.-.
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~--- 83 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD--- 83 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH---
Confidence 46899999999999999999889999999999999987654431 111 22221 1 245678899988886522
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006864 298 SKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 298 ~~li~~~~l~~mk~gailIN~a 319 (628)
-+|++....++...+++|++
T Consensus 84 --~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 84 --AVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HHhHHHHHHHHHcCcEEEEC
Confidence 35777777777777888875
No 398
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.50 E-value=0.17 Score=56.46 Aligned_cols=107 Identities=22% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh---hHHHH--cCCccc---CHHHHhccCCEEEEcCCCCcccc--
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARA--VGVELV---SFDQALATADFISLHMPLNPTTS-- 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~--~g~~~~---sl~ell~~aDvV~l~~Plt~~t~-- 298 (628)
.-+++|+|+|.+|.++|+.|+..|++|.++|..... +..++ .|+... .-.+.+.++|+|+..--..+...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 458999999999999999999999999999975422 11222 265442 12345678998876432222111
Q ss_pred --------ccccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 --------KIFNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 --------~li~~~-~l~~-mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++.+- .+.. ++.-.+-|-=+.|+.--..-+...|+.
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123332 2222 343445555577888888888888875
No 399
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.49 E-value=0.15 Score=55.96 Aligned_cols=95 Identities=19% Similarity=0.244 Sum_probs=59.9
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHcC-CCEEEEECCCCChh-HHHHcC-------C-cccCHHH-HhccCCEEEEcCCCC
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKGL-GMNVIAHDPYAPAD-KARAVG-------V-ELVSFDQ-ALATADFISLHMPLN 294 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~-~a~~~g-------~-~~~sl~e-ll~~aDvV~l~~Plt 294 (628)
..-++|+|+|. |.+|+++.+.|... ++++..+....... ...... . ...+++. .++++|+|++++|-.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 34569999997 99999999999877 67887764332111 000001 1 1112222 248899999999842
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006864 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (628)
Q Consensus 295 ~~t~~li~~~~l~~mk~gailIN~aRg~~vde~ 327 (628)
...+....|+.|+.+|+.+..-..+.+
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~ 142 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDI 142 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCc
Confidence 234455556788999999855444443
No 400
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.44 E-value=0.2 Score=58.01 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=49.4
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHcCC--cccC---HHHHhccCCEEEEcCCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGV--ELVS---FDQALATADFISLHMPL 293 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~--~~~s---l~ell~~aDvV~l~~Pl 293 (628)
.+..|+|||||-|..|+.+++.++.+|++|+++|+..... ...+..+ .+.+ +.++++++|+|+.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence 3778999999999999999999999999999999865311 1111111 1223 56677889999776543
No 401
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.44 E-value=0.13 Score=53.02 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=32.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|+.++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999998886 78888754
No 402
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.43 E-value=0.17 Score=53.66 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=47.5
Q ss_pred CeEEEEecChhHH-HHHHHHHcCC--CEEE-EECCCCC--hhHHHHcCCc--ccCHHHHhcc--CCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGS-EVARRAKGLG--MNVI-AHDPYAP--ADKARAVGVE--LVSFDQALAT--ADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~-~vA~~l~~~G--~~V~-~~d~~~~--~~~a~~~g~~--~~sl~ell~~--aDvV~l~~Pl 293 (628)
.++||||+|.|++ ..+..++..+ +++. ++|+... ...+++.++. +.+++++++. .|+|++++|-
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPN 77 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999997775 4888888776 4554 4688753 2345667764 4589999986 5999999993
No 403
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=93.43 E-value=0.17 Score=48.81 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=54.0
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC--CCCHHHHHHHhcccCccc
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVHFVAR 626 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~--~~~~~~l~~L~~l~~v~~ 626 (628)
..++|-+.-.|+||++.++..++++.|.||..+.++-.+..+.+-|.+-+.. ..-+.+.++|.++-++.+
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~k 74 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLK 74 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhcccee
Confidence 4577777788999999999999999999999999998877777777666655 334456666666555544
No 404
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=93.39 E-value=0.15 Score=53.98 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=56.7
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-------------Chh-------------HHHHc--CCcc--c----
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-------------PAD-------------KARAV--GVEL--V---- 275 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------~~~-------------~a~~~--g~~~--~---- 275 (628)
++.|+|.|.+|..+|+.|...|. ++..+|... ..+ ..++. +++. .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999996 677776321 000 00111 1110 0
Q ss_pred --------------------CHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006864 276 --------------------SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 276 --------------------sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 320 (628)
.++++++++|+|+.++- +-+++.+++..-... +..+||.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~---~k~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAAK---NKLVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHh---CCcEEEEEe
Confidence 15688999999999985 666787777655543 336777643
No 405
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.33 E-value=0.31 Score=59.69 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=45.9
Q ss_pred cCCeEEEEecChhHHHHHHHHHcC-CCE-------------EEEECCCCChhH--HHHc-CC---c--ccCHHHH---hc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGL-GMN-------------VIAHDPYAPADK--ARAV-GV---E--LVSFDQA---LA 282 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~-G~~-------------V~~~d~~~~~~~--a~~~-g~---~--~~sl~el---l~ 282 (628)
+.|+|+|||.|.||+.+|+.|... +.+ |.+.|++....+ +... ++ . ..+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 478999999999999999999754 333 888898753222 2222 32 1 1244444 46
Q ss_pred cCCEEEEcCCC
Q 006864 283 TADFISLHMPL 293 (628)
Q Consensus 283 ~aDvV~l~~Pl 293 (628)
++|+|++++|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
No 406
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.33 E-value=0.33 Score=53.91 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=68.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--HHHHcCCccc---CHHHHhccCCEEEEcCCCCccccc--
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGVELV---SFDQALATADFISLHMPLNPTTSK-- 299 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~---sl~ell~~aDvV~l~~Plt~~t~~-- 299 (628)
+.+|++.|+|+|..|.+.++.|+..|.+|.++|...... ...+.|+... .-.+.+...|+|+. -|--+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence 568899999999999999999999999999999654321 1122255432 12245677897655 443332221
Q ss_pred ---------cccH-HHHhc-CCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 300 ---------IFND-ETFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 300 ---------li~~-~~l~~-mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
++.+ +.+.. ++.-.+-|-=+.|+.--..-|...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 23332 232344455567888888888888874
No 407
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.31 E-value=0.41 Score=50.41 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=48.2
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHc----CC---cccC---HHHHhccCCEEEEcCC
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAV----GV---ELVS---FDQALATADFISLHMP 292 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~----g~---~~~s---l~ell~~aDvV~l~~P 292 (628)
.+.||++.|+|.|-.|++++-.|...|+ +|.++||..... .+... +. ...+ +++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 3557999999999999999999999997 788999864221 11111 11 1112 2345677899999888
Q ss_pred CC
Q 006864 293 LN 294 (628)
Q Consensus 293 lt 294 (628)
+.
T Consensus 204 ~G 205 (283)
T PRK14027 204 MG 205 (283)
T ss_pred CC
Confidence 54
No 408
>PRK04148 hypothetical protein; Provisional
Probab=93.09 E-value=0.22 Score=46.71 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=46.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc--C----HHHHhccCCEEEEcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV--S----FDQALATADFISLHMP 292 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~--s----l~ell~~aDvV~l~~P 292 (628)
+++++..||+| -|..+|..|+..|.+|++.|.... .+.+++.+...+ + --++-+.+|+|.-.=|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56889999999 999999999999999999997753 233444454322 1 2356677777766665
No 409
>PRK12861 malic enzyme; Reviewed
Probab=93.06 E-value=3.9 Score=48.82 Aligned_cols=172 Identities=18% Similarity=0.126 Sum_probs=113.5
Q ss_pred CceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHHcCCC--
Q 006864 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-- 253 (628)
Q Consensus 176 GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~~~G~-- 253 (628)
.|+|.|.-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~------------------~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~ 215 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLK------------------VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPV 215 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCCh
Confidence 799999832 2344456666777666 24667888999999999999999999999998
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 254 -NVIAHDPYA----------PA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 254 -~V~~~d~~~----------~~---~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+++.+|+.- .. ..++. -...+|.|+++.+|+++= +. +-+.+.++.++.|.+..+|.=.+
T Consensus 216 ~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~--~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 216 ENIWVTDIEGVVYRGRTTLMDPDKERFAQE--TDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred hhEEEEcCCCeeeCCCcccCCHHHHHHHhh--cCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888431 11 11221 133489999999998855 32 25899999999999999999998
Q ss_pred CCchhcHHHHHHHHhCCC-eeEEEeeccCCCCCCCCCccccCCcEEEcCCCCC---------CcHHHHHHHHHHHHH
Q 006864 320 RGGVIDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGA---------STKEAQEGVAIEIAE 386 (628)
Q Consensus 320 Rg~~vde~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~L~~~~nvilTPHig~---------~T~ea~~~~~~~~~~ 386 (628)
....--.-..+.. -.|+ |.+.|-- ..| =+..|+++-|-++- -|++.+...+..+++
T Consensus 289 NPtpE~~pe~a~~-~~g~aivaTGrs---~~p-------nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~ 354 (764)
T PRK12861 289 NPTPEIFPELAHA-TRDDVVIATGRS---DYP-------NQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAG 354 (764)
T ss_pred CCCccCCHHHHHh-cCCCEEEEeCCc---CCC-------CccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHh
Confidence 8664211122222 2344 5333211 111 24568999997763 355555554444444
No 410
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.95 E-value=0.31 Score=52.43 Aligned_cols=31 Identities=32% Similarity=0.613 Sum_probs=25.2
Q ss_pred eEEEEecChhHHHHHHHHHcCC----CEEEEECCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLG----MNVIAHDPY 261 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~ 261 (628)
+|||+|+|+||+.+.+.|...+ ++|...+..
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~ 35 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL 35 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC
Confidence 5899999999999999987653 788876543
No 411
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=92.89 E-value=0.39 Score=50.09 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=43.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHc-CCCEEEE-ECCCCCh----hHHHH-----cCCcc-cCHHHHhccCCEEEEcCC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDPYAPA----DKARA-----VGVEL-VSFDQALATADFISLHMP 292 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~~----~~a~~-----~g~~~-~sl~ell~~aDvV~l~~P 292 (628)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..+. +.... .++.. .+++++...+|+|+.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3799999 79999999999875 5788776 6743211 11111 23433 378888667899999886
No 412
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.84 E-value=0.53 Score=52.18 Aligned_cols=106 Identities=21% Similarity=0.264 Sum_probs=68.4
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh--H----HH-HcCCccc--CHHHHhccCCEEEEcCCCCcccc---
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--K----AR-AVGVELV--SFDQALATADFISLHMPLNPTTS--- 298 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~----a~-~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~--- 298 (628)
++.|||+|.+|.++|+.|+..|++|.++|...... . .+ ..|+... .-.+.+..+|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 47899999999999999999999999999654211 1 11 2466542 11455688998877542222211
Q ss_pred -------ccccHHHH--hcCCCCcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 299 -------KIFNDETF--AKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 -------~li~~~~l--~~mk~gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.++.+.+| ..++.-.+-|.=+.|+.--..-+...|+..
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 12333322 223444566666789988888888888763
No 413
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=92.82 E-value=0.21 Score=48.31 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=29.9
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeee
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~ 595 (628)
+...|+||++.+++.+|.++||||++|..-|..
T Consensus 97 v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~ 129 (176)
T COG2716 97 VDANDRPGIVEEFTALFDGHGINIENLVSRTYP 129 (176)
T ss_pred EEecCCccHHHHHHHHHHhcCCchhhceeeeee
Confidence 557899999999999999999999999997744
No 414
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.81 E-value=0.3 Score=53.72 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=50.9
Q ss_pred ecCCeEEEEecC----------hhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEcC
Q 006864 227 LVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHM 291 (628)
Q Consensus 227 l~GktiGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-sl~ell~~aDvV~l~~ 291 (628)
..|++|+|+|+. .-...+++.|...|.+|.+|||...... ..++.+. +++++++.||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 368999999993 4567899999999999999999864432 3466555 7999999999999854
No 415
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.77 E-value=0.18 Score=55.12 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=50.1
Q ss_pred EEEEecChhHHHHHHHHHcCC-C-EEEEECCCCChh-HHHH--c--CCcc--------cCHHHHhccCCEEEEcCCCCcc
Q 006864 232 LAVMGFGKVGSEVARRAKGLG-M-NVIAHDPYAPAD-KARA--V--GVEL--------VSFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 232 iGIIGlG~IG~~vA~~l~~~G-~-~V~~~d~~~~~~-~a~~--~--g~~~--------~sl~ell~~aDvV~l~~Plt~~ 296 (628)
|+|+|.|.+|+.+++.|...+ + +|++.|++.... ...+ . .++. .+|+++++++|+|+.|+|-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 689999999999999998776 5 899999875331 1111 1 1211 13788999999999999733
Q ss_pred ccccccHHHHh-cCCCCcEEEEc
Q 006864 297 TSKIFNDETFA-KMKKGVRIVNV 318 (628)
Q Consensus 297 t~~li~~~~l~-~mk~gailIN~ 318 (628)
.+...++ .++.|+-.||+
T Consensus 79 ----~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 79 ----FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp ----GHHHHHHHHHHHT-EEEES
T ss_pred ----hhHHHHHHHHHhCCCeecc
Confidence 2222222 23456666663
No 416
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.75 E-value=0.32 Score=53.26 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=50.3
Q ss_pred hHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCCeEEEEecChhHHHHHHHHH
Q 006864 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAK 249 (628)
Q Consensus 170 ~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~GktiGIIGlG~IG~~vA~~l~ 249 (628)
.+..+.|-.+...+......... ..|++ .-+.|... .-..+.+++|.|+|+|.+|..+|+.|.
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~--------y~r~i-------~l~~~g~~--~q~~l~~~~VlvvG~GG~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDER--------YSRHL-------RLPEVGEE--GQRRLLEARVLLIGAGGLGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHH--------HHHhc-------chhhcCHH--HHHHHhcCcEEEECCCHHHHHHHHHHH
Confidence 44556677777666655444322 22333 22234321 123588999999999999999999999
Q ss_pred cCCC-EEEEECCC
Q 006864 250 GLGM-NVIAHDPY 261 (628)
Q Consensus 250 ~~G~-~V~~~d~~ 261 (628)
..|. ++..+|+.
T Consensus 156 ~~Gvg~i~lvD~d 168 (376)
T PRK08762 156 AAGVGTLGIVDHD 168 (376)
T ss_pred HcCCCeEEEEeCC
Confidence 9997 78888875
No 417
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=92.72 E-value=0.26 Score=57.17 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=76.1
Q ss_pred CChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccce-eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC
Q 006864 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (628)
Q Consensus 185 ~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~ 262 (628)
.+....||.++-|=|-+.| |.--...+ ..|++.++.|||.|.+|..+|+.|.+.|. ++..+|...
T Consensus 306 mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 306 FDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 4556677777766665554 65322122 46889999999999999999999999997 577766310
Q ss_pred ------------Chh-----------HH----HHc--CCc------c-------c-------------CHHHHhccCCEE
Q 006864 263 ------------PAD-----------KA----RAV--GVE------L-------V-------------SFDQALATADFI 287 (628)
Q Consensus 263 ------------~~~-----------~a----~~~--g~~------~-------~-------------sl~ell~~aDvV 287 (628)
..+ .+ ++. +++ . + .++++++++|+|
T Consensus 373 Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV 452 (664)
T TIGR01381 373 VSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVV 452 (664)
T ss_pred ECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEE
Confidence 000 00 111 010 0 1 245788999999
Q ss_pred EEcCCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 288 ~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
+.++- +-++|.+++..-..+ +..+|+.+
T Consensus 453 ~d~tD-n~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 453 FLLLD-SREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred EECCC-CHHHHHHHHHHHHHh---CCCEEEEE
Confidence 99887 667888887665543 44566654
No 418
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=92.71 E-value=0.28 Score=52.92 Aligned_cols=59 Identities=25% Similarity=0.391 Sum_probs=43.3
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCC--cccC---HHHHhccCCEEEE
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV--ELVS---FDQALATADFISL 289 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~--~~~s---l~ell~~aDvV~l 289 (628)
||||||-|..|+.+++.++.+|++|+++|+.... ....+..+ ...+ +.++++.||+|+.
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 6999999999999999999999999999986522 11111111 1223 6778889999854
No 419
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.69 E-value=0.15 Score=52.42 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=32.3
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35889999999999999999999998885 67777754
No 420
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.68 E-value=0.18 Score=48.29 Aligned_cols=63 Identities=29% Similarity=0.300 Sum_probs=47.0
Q ss_pred EEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEcCCCCc
Q 006864 232 LAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------VSFDQALATADFISLHMPLNP 295 (628)
Q Consensus 232 iGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~--------~sl~ell~~aDvV~l~~Plt~ 295 (628)
|.|+| .|.+|+.+++.|...|.+|.++-|....... ..+++. .++.+.++.+|.|+.+++-..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 57888 5999999999999999999999877532211 334332 135778889999999997544
No 421
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.66 E-value=0.99 Score=45.25 Aligned_cols=35 Identities=40% Similarity=0.489 Sum_probs=32.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|+++.|.|.|.+|+.+++.++..|.+|++.++..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57899999999999999999999999999998764
No 422
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.63 E-value=0.26 Score=54.43 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=64.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHh--ccCCEEEEcCCCCccc------cccc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL--ATADFISLHMPLNPTT------SKIF 301 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell--~~aDvV~l~~Plt~~t------~~li 301 (628)
+++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+.... ++.+ .++|+|+..--..+.. +.++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~ 78 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLI 78 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 36899999999999999999 99999999954322212234655432 2234 4689886652222221 1123
Q ss_pred cHHH-Hh-cCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 302 NDET-FA-KMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 302 ~~~~-l~-~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.+-. +. .++ ..+-|-=+-|+.--.+-+...|+.
T Consensus 79 ~~~e~~~~~~~-~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 79 SEYDYFYDVMP-FSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hHHHHHHHhcC-CEEEEECCCcHHHHHHHHHHHHHH
Confidence 3322 22 243 355566677888888888888875
No 423
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.58 E-value=0.39 Score=49.83 Aligned_cols=45 Identities=31% Similarity=0.467 Sum_probs=35.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g~ 272 (628)
.|+++.|+|.|.||...++.++.+|.+ |++.|+.. ..+.++++|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 588999999999999999999999986 88887654 2234455554
No 424
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.57 E-value=0.44 Score=50.33 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=68.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCH-HHHhccCCEEEEcCCCCccccc--------
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSF-DQALATADFISLHMPLNPTTSK-------- 299 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl-~ell~~aDvV~l~~Plt~~t~~-------- 299 (628)
|++++|||-=.--..+++.|...|++|..|.-....... .|+...++ ++.++++|+|++-+|.+.+...
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 689999999999999999999999998776422110101 15555544 4558999999999997665211
Q ss_pred --cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 300 --IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 300 --li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
-++++.++.|+++++ +-++ ++..++-++.++..|
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi 114 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGV 114 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCC
Confidence 246788999997654 4444 333444445555555
No 425
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.55 E-value=1.1 Score=41.68 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=57.9
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-C-hhH-------HHHcCCccc-----CHHHHhccCCEEEEcCCCCc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-P-ADK-------ARAVGVELV-----SFDQALATADFISLHMPLNP 295 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~-~~~-------a~~~g~~~~-----sl~ell~~aDvV~l~~Plt~ 295 (628)
++.|+|+|.+|..+|+.|...|. ++..+|+.. . ... ....|...+ .+.++-+..++-......++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 58999999999999999999997 799998763 1 111 122232111 23344444444443322221
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCe
Q 006864 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (628)
Q Consensus 296 ~t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i 338 (628)
......+++--++|+|.-. .-....+.++.+...+
T Consensus 81 -------~~~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i 115 (143)
T cd01483 81 -------DNLDDFLDGVDLVIDAIDN-IAVRRALNRACKELGI 115 (143)
T ss_pred -------hhHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCC
Confidence 1113345667788887643 4445556666666544
No 426
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.53 E-value=0.22 Score=58.15 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=59.8
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC-hhHHHHcCCccc-----CHH----HHhccCCEEEEcCCCCcccc
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----SFD----QALATADFISLHMPLNPTTS 298 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g~~~~-----sl~----ell~~aDvV~l~~Plt~~t~ 298 (628)
...+-|+|+|++|+.+|+.|++.|.++++.|.+.. .+..++.|+... +.+ .-+++||.++++++-.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 46899999999999999999999999999987753 334455665432 222 23568999999997444332
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006864 299 KIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 299 ~li~~~~l~~mk~gailIN~a 319 (628)
.+ -...+.+.|...++--+
T Consensus 480 ~i--~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 480 QL--VELVKEHFPHLQIIARA 498 (621)
T ss_pred HH--HHHHHHhCCCCeEEEEE
Confidence 22 23344455665555433
No 427
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.48 E-value=1.5 Score=46.66 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=82.1
Q ss_pred CeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCccc-------------CHHHHhccCCEEEEcCCCCcc
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-------------SFDQALATADFISLHMPLNPT 296 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~-------------sl~ell~~aDvV~l~~Plt~~ 296 (628)
++|.|+|.|.||.-++.+|...|..|...-+....++.++.|.... .-.+.+..+|+|++++-- -+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-YQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-cc
Confidence 4799999999999999999999977777765543344444453211 223566789999998742 22
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHHHhCCCeeEEEeeccC---CCCCCCCCccccCCcEEEcCCCCCCc
Q 006864 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT---EEPPAKDSKLVQHENVTVTPHLGAST 373 (628)
Q Consensus 297 t~~li~~~~l~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga~lDV~~---~EP~~~~~~L~~~~nvilTPHig~~T 373 (628)
+...+ +.....+++.+.|+-.-- ++=.++.+.+.+...++.+ |+..++ .+|- .-.......+.+.+.-+...
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g--~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQN-GLGHEEELRKILPKETVLG-GVTTHGAVREGPG--HVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeC-CCcHHHHHHHhCCcceEEE-EEeeeeeEecCCc--eEEEecCCcEEEccCCCCch
Confidence 33322 344455677776664433 3444556666666654432 222222 1221 11233456777877777664
No 428
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.40 E-value=0.54 Score=39.46 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=41.3
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC---C-CCHHHHHHHh
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---E-PNQDSLKEIG 619 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~---~-~~~~~l~~L~ 619 (628)
+..+|+||..+.++..|.++|+||...++... .+|.++=.+.+.+ . .+++.+++|+
T Consensus 5 i~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~~~~~~~~~~l~ 64 (76)
T cd04927 5 LFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDARELLHTKKRREETY 64 (76)
T ss_pred EEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 45679999999999999999999999999853 5567766666522 2 2445455444
No 429
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.31 E-value=0.38 Score=51.24 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=54.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCccc-CHHH-HhccCCEEEEcCCCCccccccccHH
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQ-ALATADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~~-sl~e-ll~~aDvV~l~~Plt~~t~~li~~~ 304 (628)
.|.++.|.|.|.+|...++.++.+|++|++.++.. ..+.++++|+..+ +..+ .-...|+++.+.... + .-..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~----~~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G----LVPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H----HHHH
Confidence 37899999999999999999999999999988764 3455677776432 2111 112245554443321 1 1234
Q ss_pred HHhcCCCCcEEEEcC
Q 006864 305 TFAKMKKGVRIVNVA 319 (628)
Q Consensus 305 ~l~~mk~gailIN~a 319 (628)
.++.++++..++.++
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 455566666666554
No 430
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.29 E-value=0.29 Score=52.53 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=45.8
Q ss_pred ecCCeEEEEec-ChhHHHHHHHHHc--CCCEEEEECCCCChhHHHHc-----CCccc------CHHHHhccCCEEEEcCC
Q 006864 227 LVGKTLAVMGF-GKVGSEVARRAKG--LGMNVIAHDPYAPADKARAV-----GVELV------SFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~GktiGIIGl-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~-----g~~~~------sl~ell~~aDvV~l~~P 292 (628)
++.++|+|||. |+||..+|..+.. ..-++..+|.......+.++ ..... +..+.++.||+|++++-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 56679999999 9999999999984 44689999973322211110 11111 12678999999998765
Q ss_pred C
Q 006864 293 L 293 (628)
Q Consensus 293 l 293 (628)
.
T Consensus 86 ~ 86 (321)
T PTZ00325 86 V 86 (321)
T ss_pred C
Confidence 3
No 431
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.25 E-value=0.099 Score=45.37 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=26.5
Q ss_pred EEeccCCCCchhhHHhhhhcCCccccceEE
Q 006864 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSV 591 (628)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INIa~m~v 591 (628)
-+.-+|+||+++.|++.|+++|+||-++.-
T Consensus 7 TV~GkDr~GIva~is~vLAe~~vNIldisQ 36 (90)
T COG3830 7 TVIGKDRVGIVAAVSRVLAEHGVNILDISQ 36 (90)
T ss_pred EEEcCCCCchhHHHHHHHHHcCCcEEEHHH
Confidence 345699999999999999999999998764
No 432
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.22 E-value=0.39 Score=53.16 Aligned_cols=36 Identities=33% Similarity=0.647 Sum_probs=30.1
Q ss_pred CeEEEEecChhHHHHHHHHHc-CCCEEEE-ECCCCChh
Q 006864 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAPAD 265 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~~~ 265 (628)
.++||.|||+||+.+++.+.. ++++|++ .||....+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~ 123 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAK 123 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHH
Confidence 489999999999999999874 8999988 67765443
No 433
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.21 E-value=0.35 Score=54.31 Aligned_cols=107 Identities=21% Similarity=0.227 Sum_probs=65.5
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc-CCccc--CHHHHhccCCEEEEcCCCCccc------
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV-GVELV--SFDQALATADFISLHMPLNPTT------ 297 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-g~~~~--sl~ell~~aDvV~l~~Plt~~t------ 297 (628)
.||+++|+|+|.-|.++|+.|+. |.+|+++|..... ....+. ..... .-.+.+.++|+|+..=-..+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999995 9999999954321 111111 11111 1234567899987753222211
Q ss_pred ----cccccHHHH--hcCCC-CcEEEEcCCCchhcHHHHHHHHhC
Q 006864 298 ----SKIFNDETF--AKMKK-GVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 298 ----~~li~~~~l--~~mk~-gailIN~aRg~~vde~aL~~aL~~ 335 (628)
..++++-+| ..+++ -.+=|-=+.|+.--..-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123444333 23332 234445567888888888888875
No 434
>PLN02602 lactate dehydrogenase
Probab=92.17 E-value=0.36 Score=52.42 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=55.5
Q ss_pred CeEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHc---------C-Ccc---cCHHHHhccCCEEEEcCCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAV---------G-VEL---VSFDQALATADFISLHMPLN 294 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~---------g-~~~---~sl~ell~~aDvV~l~~Plt 294 (628)
++|+|||.|.||..+|..+...|. ++..+|..........+ + ... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999986664 79999976532211111 1 111 133 4489999999985432
Q ss_pred --c-cccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006864 295 --P-TTSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (628)
Q Consensus 295 --~-~t~~-li--~~-------~~l~~mk~gailIN~a 319 (628)
+ +++. ++ |. ..+....+.+++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 2231 11 11 2233456777888887
No 435
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.13 E-value=0.36 Score=48.66 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=32.7
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|+.+++.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35889999999999999999999998887 58888865
No 436
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.00 E-value=0.61 Score=39.01 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=44.1
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEe---C-CCC-CHHHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV---D-EEP-NQDSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~v---D-~~~-~~~~l~~L~~ 620 (628)
+=+...|+||.+..|+..|.+.|++|..-.+. ..|+.+.=++-+ + .++ +++.+++|++
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~ 66 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEK 66 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 44567999999999999999999999999986 566677655555 2 233 4577777764
No 437
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.90 E-value=0.32 Score=54.03 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=46.8
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh-hHHHHc--CCccc-----C---H-HHHhccCCEEEEcCCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV--GVELV-----S---F-DQALATADFISLHMPL 293 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--g~~~~-----s---l-~ell~~aDvV~l~~Pl 293 (628)
+..+++.|+|+|.+|+.+++.|...|.+|+++|..... +...+. ++..+ + | +.-+.++|.|+++++-
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 45689999999999999999999999999999876432 222221 33211 2 2 2235688888887763
No 438
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.85 E-value=0.7 Score=49.93 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=35.2
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCCh--hHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~ 272 (628)
.|+++.|.|.|.+|...++.++.+|.+|++.+..... +.++++|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC
Confidence 5789999999999999999999999999887655322 23345554
No 439
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=91.81 E-value=0.24 Score=47.05 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=54.8
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCcccccccc---H
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN---D 303 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~---~ 303 (628)
..|+++++||+= +.++++++..+.++.++|...........++.....++++++||+|++.-- -++| +
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS------TLVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH------HCCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee------eeecCCHH
Confidence 368999999961 237888888899999999875322111122333467899999999988431 2344 4
Q ss_pred HHHhcCCCCcEEEEcCC
Q 006864 304 ETFAKMKKGVRIVNVAR 320 (628)
Q Consensus 304 ~~l~~mk~gailIN~aR 320 (628)
..|+..+++..++=.+-
T Consensus 80 ~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 80 DILELARNAREVILYGP 96 (147)
T ss_dssp HHHHHTTTSSEEEEESC
T ss_pred HHHHhCccCCeEEEEec
Confidence 56777777777766654
No 440
>PRK07877 hypothetical protein; Provisional
Probab=91.79 E-value=0.24 Score=58.60 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=64.1
Q ss_pred eecCCeEEEEecChhHHHHHHHHHcCCC--EEEEECCCC------Chh----------H---H----HHc--CCc-----
Q 006864 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA------PAD----------K---A----RAV--GVE----- 273 (628)
Q Consensus 226 ~l~GktiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~------~~~----------~---a----~~~--g~~----- 273 (628)
.|++++|+|+|+| +|+.+|..|...|. ++..+|... +.. + + .+. .++
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5889999999999 89999999998774 777776421 000 0 0 111 111
Q ss_pred -c---cCHHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006864 274 -L---VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (628)
Q Consensus 274 -~---~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd 325 (628)
. -++++++..+|+|+-|+- +-+++.++|+...++-+| +|.-.+-++.+|
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~iP--~i~~~~~~g~~~ 235 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRIP--VLMATSDRGLLD 235 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCC--EEEEcCCCCCcC
Confidence 1 147788999999988887 557899998877765333 444444445444
No 441
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.76 E-value=0.63 Score=39.26 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=44.0
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeCC---CC-CHHHHHHHhc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---EP-NQDSLKEIGK 620 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD~---~~-~~~~l~~L~~ 620 (628)
+=+...|+||.+..|+..|.+.|++|.+.++.-...|+.+.=++-+|. ++ +++-+++|++
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~ 66 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCA 66 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHH
Confidence 345679999999999999999999999999974456667755555533 33 3455555543
No 442
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=91.74 E-value=0.15 Score=52.09 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=50.2
Q ss_pred CCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEeC--CCCCHHHHHHHhcccCcccc
Q 006864 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQDSLKEIGKVHFVARI 627 (628)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~vD--~~~~~~~l~~L~~l~~v~~v 627 (628)
..|++=|...|.||+|.+|+.+|+..|.||..+.|.-.+.....-|.|-+- +.+-+.+.++|+++-+|+.|
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhhee
Confidence 468888889999999999999999999999999998765433332233222 23344566667766655543
No 443
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=91.74 E-value=3 Score=44.44 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=46.8
Q ss_pred eecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC--Chh--------HHHHcCCcc--c-CHHHHhccCCEEEEcC
Q 006864 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVEL--V-SFDQALATADFISLHM 291 (628)
Q Consensus 226 ~l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~--~~~--------~a~~~g~~~--~-sl~ell~~aDvV~l~~ 291 (628)
.+.|++|+++|-+ ++..+.+..+..||++|....|.. +.. .++..|... . ++ +.++.||+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 3789999999984 667888899999999999988753 211 123345542 2 54 5789999998833
No 444
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=91.72 E-value=0.33 Score=51.24 Aligned_cols=95 Identities=25% Similarity=0.370 Sum_probs=69.9
Q ss_pred eeeecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCCcc---------------cC----------H
Q 006864 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL---------------VS----------F 277 (628)
Q Consensus 224 g~~l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~~~---------------~s----------l 277 (628)
+-...+.++-++|+|-+|-..+...+..|+-|..+|-.. ..++-+++|.++ .+ +
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 445677888999999999999999999999999998543 122222232211 11 4
Q ss_pred HHHhccCCEEEEc--CCCCccccccccHHHHhcCCCCcEEEEcC
Q 006864 278 DQALATADFISLH--MPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (628)
Q Consensus 278 ~ell~~aDvV~l~--~Plt~~t~~li~~~~l~~mk~gailIN~a 319 (628)
.+..++.|+|+.. +|..+. -.++.++-.+.||||+++||.+
T Consensus 239 a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 5678899999874 455553 4578899999999999999985
No 445
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.60 E-value=0.41 Score=40.94 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=40.9
Q ss_pred EEEeccCCCCchhhHHhhhhcCCccccceEEeeee-cCccEEEEEEeCC--CCCHHHHHHHhcc
Q 006864 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDE--EPNQDSLKEIGKV 621 (628)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~-~gg~Al~~i~vD~--~~~~~~l~~L~~l 621 (628)
+.+.-+|+||.++++.++|+. .||..+...|.. ..+...+.+++++ +--+++++.|++.
T Consensus 4 l~v~ipD~PG~L~~ll~~l~~--anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~ 65 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIGP--RNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSA 65 (85)
T ss_pred EEEecCCCCcHHHHHHHHhCC--CceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHC
Confidence 556789999999999999994 455566665533 3445566677766 3344777777663
No 446
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.59 E-value=0.23 Score=49.90 Aligned_cols=63 Identities=30% Similarity=0.356 Sum_probs=48.5
Q ss_pred EEEEec-ChhHHHHHHHHHcCCCEEEEECCCCChh---HHHHcCCccc--------CHHHHhccCCEEEEcCCCC
Q 006864 232 LAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPAD---KARAVGVELV--------SFDQALATADFISLHMPLN 294 (628)
Q Consensus 232 iGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~~g~~~~--------sl~ell~~aDvV~l~~Plt 294 (628)
|.|+|. |.+|+.+++.|...+++|.+.-+..+.. .....|++.+ +|.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 578885 9999999999999999998876654332 2345676532 4778899999999999955
No 447
>PRK08223 hypothetical protein; Validated
Probab=91.48 E-value=0.34 Score=51.15 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=32.1
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35899999999999999999999999886 67777754
No 448
>PRK10206 putative oxidoreductase; Provisional
Probab=91.39 E-value=0.41 Score=51.67 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=42.3
Q ss_pred eEEEEecChhHHH-HHHHHHc--CCCEEEE-ECCCCCh-hHHHHcC-Ccc-cCHHHHhc--cCCEEEEcCCCC
Q 006864 231 TLAVMGFGKVGSE-VARRAKG--LGMNVIA-HDPYAPA-DKARAVG-VEL-VSFDQALA--TADFISLHMPLN 294 (628)
Q Consensus 231 tiGIIGlG~IG~~-vA~~l~~--~G~~V~~-~d~~~~~-~~a~~~g-~~~-~sl~ell~--~aDvV~l~~Plt 294 (628)
++||||+|.|++. .+..++. -++++.+ +|+.... +.+...+ +.. .+++++++ +.|+|++++|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 6999999998864 3444433 2578765 7876422 2233344 333 37999996 579999999933
No 449
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=91.36 E-value=0.33 Score=57.49 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=52.9
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEEEe--CCCC-CHHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV--DEEP-NQDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i~v--D~~~-~~~~l~~L~~l~~v~~v 627 (628)
.|.+...|++|+++.|++++++.++||..+++....+++.+.+.+.+ .+.. =..++.+|+++++|.+|
T Consensus 668 ~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v 738 (743)
T PRK10872 668 VVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDA 738 (743)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeE
Confidence 44567899999999999999999999999998654446676666554 3321 22789999999999876
No 450
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.23 E-value=0.56 Score=50.01 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=43.6
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCC--EEEEECCCC--ChhHH------H---HcCC--cc--c-CHHHHhccCCEEEEc
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGM--NVIAHDPYA--PADKA------R---AVGV--EL--V-SFDQALATADFISLH 290 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~--~~~~a------~---~~g~--~~--~-sl~ell~~aDvV~l~ 290 (628)
++|+|+|. |.+|..+|..|...|. +|+.+|+.. ..... . ..+. .. . +. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 58999998 9999999999988775 599999743 11100 0 1111 11 1 44 459999999999
Q ss_pred CCC
Q 006864 291 MPL 293 (628)
Q Consensus 291 ~Pl 293 (628)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 864
No 451
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.23 E-value=0.49 Score=50.05 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=44.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCCCEEEEECCCCChh-HHHHcCCccc--------CHHHHhccCCEEEEcC
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVELV--------SFDQALATADFISLHM 291 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~g~~~~--------sl~ell~~aDvV~l~~ 291 (628)
++|.|.| .|.||+.+++.|...|++|.+.++..... .....+++.+ ++.++++.+|+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 4788998 69999999999999999999988764221 1122344322 3677889999987654
No 452
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.22 E-value=3.3 Score=43.87 Aligned_cols=92 Identities=26% Similarity=0.356 Sum_probs=66.3
Q ss_pred ecCCeEEEEecC-hhHHHHHHHHHcCCCEEEEECCCC--C-h---hH----HHHcC--Cccc-CHHHHhccCCEEEEcCC
Q 006864 227 LVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--P-A---DK----ARAVG--VELV-SFDQALATADFISLHMP 292 (628)
Q Consensus 227 l~GktiGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~--~-~---~~----a~~~g--~~~~-sl~ell~~aDvV~l~~P 292 (628)
++|+|+..+|=| +++.++...+..+||+|...-|.. + . +. +++.| +..+ +.++.++.||+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 999999999876 688888888899999999876642 1 1 11 23334 3333 89999999999987665
Q ss_pred CC--cccc-----------ccccHHHHhcCCCCcEEEEc
Q 006864 293 LN--PTTS-----------KIFNDETFAKMKKGVRIVNV 318 (628)
Q Consensus 293 lt--~~t~-----------~li~~~~l~~mk~gailIN~ 318 (628)
.. ++.+ ..+|.+.++.-++++++.-|
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC 269 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC 269 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence 32 2222 45677777777777777777
No 453
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.08 E-value=0.21 Score=49.55 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=32.5
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEEE
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAI 604 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~i 604 (628)
+.-+|+||+++.|+..|+++|+||.+.+..+-...-..+|.+
T Consensus 13 viG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 13 ALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred EEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 345999999999999999999999999887643322334444
No 454
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.05 E-value=0.82 Score=49.85 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=31.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|.++.|.|.|.+|...++.++.+|.+|++.++..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999999987653
No 455
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.93 E-value=0.71 Score=48.89 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=31.3
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA 262 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~ 262 (628)
|.++.|+|.|.+|...++.++.+|.+ |++.++..
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 89999999999999999999999998 99988754
No 456
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.93 E-value=0.95 Score=48.04 Aligned_cols=45 Identities=31% Similarity=0.474 Sum_probs=35.3
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|.|.|.+|+.+++.++++|++|++.++.. ..+.+.++|+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 46799999999999999999999999999988764 2233344443
No 457
>PRK15076 alpha-galactosidase; Provisional
Probab=90.87 E-value=0.74 Score=51.44 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=69.2
Q ss_pred CeEEEEecChhHHHHHH--HH---HcC-CCEEEEECCCCChhH-H--------HHcCC----c-ccCHHHHhccCCEEEE
Q 006864 230 KTLAVMGFGKVGSEVAR--RA---KGL-GMNVIAHDPYAPADK-A--------RAVGV----E-LVSFDQALATADFISL 289 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~--~l---~~~-G~~V~~~d~~~~~~~-a--------~~~g~----~-~~sl~ell~~aDvV~l 289 (628)
++|+|||.|.+|...+- .+ .++ |.+|..||....... . ...+. . ..++.+.++.||||+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 48999999999965544 22 334 459999997642211 1 11221 1 2267899999999999
Q ss_pred cCCCC--c--------------------ccc-------cccc-------HHHHhcCCCCcEEEEcCCCchhcHHHHHHHH
Q 006864 290 HMPLN--P--------------------TTS-------KIFN-------DETFAKMKKGVRIVNVARGGVIDEEALVRAL 333 (628)
Q Consensus 290 ~~Plt--~--------------------~t~-------~li~-------~~~l~~mk~gailIN~aRg~~vde~aL~~aL 333 (628)
++-.. . +|. .+-+ .+.+....|++++||.+..-=+-..++.+ +
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~~-~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMNR-Y 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhc-C
Confidence 88653 1 110 0111 12344456899999998776566666663 3
Q ss_pred hCCCeeEEE
Q 006864 334 DSGVVAQAA 342 (628)
Q Consensus 334 ~~g~i~ga~ 342 (628)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 445776764
No 458
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.87 E-value=0.75 Score=44.85 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=27.5
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
+++|||+|.+|..+|+.|...|. ++..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999998897 58888865
No 459
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.81 E-value=0.46 Score=50.66 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=43.0
Q ss_pred eEEEEecChhHHHHHHHHHcCCC--EEEEECCCCChhHHHHcC------------Ccc-cCHHHHhccCCEEEEcCCC
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVG------------VEL-VSFDQALATADFISLHMPL 293 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g------------~~~-~sl~ell~~aDvV~l~~Pl 293 (628)
+|+|||.|.||..+|..|...|. ++..+|..........+. +.. ..-.+.+++||+|+++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 58999999999999998875554 799999764322211111 111 1224788999999997653
No 460
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.80 E-value=0.76 Score=49.20 Aligned_cols=35 Identities=34% Similarity=0.499 Sum_probs=31.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|.++.|+|.|.||...++.++.+|.+|++.++..
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 47899999999999999999999999999988754
No 461
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=90.79 E-value=0.62 Score=50.49 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=48.9
Q ss_pred CeEEEEecChhHHHHHHHHHcC--CCEEEE-ECCCCC--hhHHHHcCCc-ccCHHHHhccCCEEEEcCCC
Q 006864 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIA-HDPYAP--ADKARAVGVE-LVSFDQALATADFISLHMPL 293 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~g~~-~~sl~ell~~aDvV~l~~Pl 293 (628)
.++||||. .+|+.-++.++.. +.++.+ +|+... .+.+++.|+. +.++++++++.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 58999999 6899999888865 477766 677642 2345666775 45899999999999999984
No 462
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.78 E-value=0.7 Score=48.46 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=44.0
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCCChh--HHHHcCCcccCHHHH-hccCCEEEEcCCCC
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPAD--KARAVGVELVSFDQA-LATADFISLHMPLN 294 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g~~~~sl~el-l~~aDvV~l~~Plt 294 (628)
++++.|+|.|..+++++..|+..|. +|.+++|..... .+...++... +++ ...+|+|+.++|+-
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccc
Confidence 4689999999999999999999997 599999875221 1222222211 111 24578888888843
No 463
>PLN00106 malate dehydrogenase
Probab=90.45 E-value=0.56 Score=50.38 Aligned_cols=64 Identities=23% Similarity=0.203 Sum_probs=44.8
Q ss_pred CCeEEEEec-ChhHHHHHHHHHcCC--CEEEEECCCCChhHHHHc-------CCc----ccCHHHHhccCCEEEEcCC
Q 006864 229 GKTLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARAV-------GVE----LVSFDQALATADFISLHMP 292 (628)
Q Consensus 229 GktiGIIGl-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~-------g~~----~~sl~ell~~aDvV~l~~P 292 (628)
.++|+|||. |+||..+|..|...+ -++..+|.......+.++ .+. ..++.+.++.||+|+++.-
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 469999999 999999999998544 489999975521111111 111 1235789999999998764
No 464
>PRK13529 malate dehydrogenase; Provisional
Probab=90.42 E-value=9.9 Score=43.74 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=119.2
Q ss_pred CcceeEEecccccCc-ccHhHHHhcCceEEcCCCCChhhHHHHHHHHHHHHHHchhHHHHHHHcCcccccccceeeecCC
Q 006864 152 GKLKVVGRAGVGIDN-VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (628)
Q Consensus 152 ~~Lk~I~~~g~G~D~-iDl~aa~~~GI~V~n~p~~~~~avAE~~l~l~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~Gk 230 (628)
|+. +|+.-=-+..| +.+..--+..|.+.|+-- .-+|--+++-+|+..| ..|..|...
T Consensus 239 P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi---QGTaaV~LAgll~A~r------------------~~g~~l~d~ 296 (563)
T PRK13529 239 PNA-LLQFEDFAQKNARRILERYRDEICTFNDDI---QGTGAVTLAGLLAALK------------------ITGEPLSDQ 296 (563)
T ss_pred CCe-EEehhhcCCchHHHHHHHhccCCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhhc
Confidence 344 55544344333 444444556789988753 3344456777777777 246678889
Q ss_pred eEEEEecChhHHHHHHHHHc----CCC-------EEEEECCCC--C-------h---hHHHHcC-C-------cccCHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKG----LGM-------NVIAHDPYA--P-------A---DKARAVG-V-------ELVSFDQ 279 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~----~G~-------~V~~~d~~~--~-------~---~~a~~~g-~-------~~~sl~e 279 (628)
+|.|+|.|..|-.+|+.+.. .|+ +++.+|..- . . ..++... . ...+|.|
T Consensus 297 riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e 376 (563)
T PRK13529 297 RIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLE 376 (563)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHH
Confidence 99999999999999999875 577 788888641 0 1 0111111 0 1147999
Q ss_pred HhccC--CEEEEcCCCCccccccccHHHHhcCCC---CcEEEEcCCCchh---cHHHHHHHHhCCCeeEEEeeccCCCCC
Q 006864 280 ALATA--DFISLHMPLNPTTSKIFNDETFAKMKK---GVRIVNVARGGVI---DEEALVRALDSGVVAQAALDVFTEEPP 351 (628)
Q Consensus 280 ll~~a--DvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~~v---de~aL~~aL~~g~i~ga~lDV~~~EP~ 351 (628)
+++.+ |+++=+- ..-+.|+++.++.|.+ ..+|.=.++...- ..++.+++=+...|.+.|...-..+-.
T Consensus 377 ~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~ 452 (563)
T PRK13529 377 VVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN 452 (563)
T ss_pred HHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeC
Confidence 99988 9987532 1247999999999987 8899999887663 333333333333455555432111100
Q ss_pred CCCCccccCCcEEEcCCCCC
Q 006864 352 AKDSKLVQHENVTVTPHLGA 371 (628)
Q Consensus 352 ~~~~~L~~~~nvilTPHig~ 371 (628)
.....-=+..|+++-|=+|-
T Consensus 453 G~~~~p~Q~NN~~iFPGigl 472 (563)
T PRK13529 453 GKTYPIGQCNNAYIFPGLGL 472 (563)
T ss_pred CeEeccCcCcceeecccchh
Confidence 00111124578999998874
No 465
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.38 E-value=0.75 Score=51.32 Aligned_cols=105 Identities=16% Similarity=0.247 Sum_probs=67.4
Q ss_pred eEEEEecChhHHHHHHHHHcCCCEEEEECCCCChh------HHHHcCCccc---CH-----HHHhccCCEEEEcCCCCcc
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD------KARAVGVELV---SF-----DQALATADFISLHMPLNPT 296 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------~a~~~g~~~~---sl-----~ell~~aDvV~l~~Plt~~ 296 (628)
++.|||+|..|.+.|+.|...|++|.++|...... ...+.|+... .. .+.+.+.|+|+..-...++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 58999999999999999999999999999754221 1234465432 12 2467889999874433332
Q ss_pred ccc----------cccHHHH--hcCCC-CcEEEEcCCCchhcHHHHHHHHhC
Q 006864 297 TSK----------IFNDETF--AKMKK-GVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 297 t~~----------li~~~~l--~~mk~-gailIN~aRg~~vde~aL~~aL~~ 335 (628)
... ++.+-.+ ..+++ ..+-|--+.|+.--..-|...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 111 1232222 23332 345555577888888877777765
No 466
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.36 E-value=0.64 Score=46.56 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=33.1
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
++.++++.|+|. |.||+.+++.|...|++|++.++..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999985 8999999999999999999998875
No 467
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.36 E-value=0.35 Score=51.29 Aligned_cols=46 Identities=39% Similarity=0.538 Sum_probs=39.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCCc
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~~ 273 (628)
.|.|++|+|+|.+|.+++.-++++|. ++++.|-.. ..+.++++|++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58999999999999999999999996 899999876 34567777874
No 468
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.33 E-value=0.79 Score=53.82 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.7
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
-.|+++.|||.|..|.+.|..|+..|++|++||+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46899999999999999999999999999999864
No 469
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.32 E-value=1 Score=48.78 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=32.1
Q ss_pred eEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHH
Q 006864 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARA 269 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~ 269 (628)
++.|+|.|.||.-.+..++.+|. +|++.|+.. ..+.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 99999999999999999999995 677888865 3344555
No 470
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.32 E-value=0.92 Score=49.04 Aligned_cols=45 Identities=33% Similarity=0.451 Sum_probs=35.8
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|.|.|.+|...++.++.+|+ +|++.|+.. ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999 699888764 2234455554
No 471
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.21 E-value=0.35 Score=52.91 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.2
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|.+++|.|||+|.+|..+++.|...|. ++..+|+.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999999999999999999999996 78888864
No 472
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.20 E-value=0.51 Score=50.68 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=43.4
Q ss_pred eEEEEec-ChhHHHHHHHHHcCC-------CEEEEECCCCChh--HHHHcC-----------Cc-ccCHHHHhccCCEEE
Q 006864 231 TLAVMGF-GKVGSEVARRAKGLG-------MNVIAHDPYAPAD--KARAVG-----------VE-LVSFDQALATADFIS 288 (628)
Q Consensus 231 tiGIIGl-G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~--~a~~~g-----------~~-~~sl~ell~~aDvV~ 288 (628)
+|+|+|. |.+|+.++..|...+ .++..+|.....+ ....+. +. ..++.+.++.||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999998644 4899998743211 111111 11 235678899999998
Q ss_pred EcCCC
Q 006864 289 LHMPL 293 (628)
Q Consensus 289 l~~Pl 293 (628)
.+.-.
T Consensus 84 ~tAG~ 88 (325)
T cd01336 84 LVGAM 88 (325)
T ss_pred EeCCc
Confidence 87644
No 473
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=90.19 E-value=0.44 Score=42.92 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=57.4
Q ss_pred ecChhHHHHHHHHHcC----CCEEEE-ECCC--CChhHHHH--cCCcccCHHHHhc--cCCEEEEcCCCCccccccccHH
Q 006864 236 GFGKVGSEVARRAKGL----GMNVIA-HDPY--APADKARA--VGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDE 304 (628)
Q Consensus 236 GlG~IG~~vA~~l~~~----G~~V~~-~d~~--~~~~~a~~--~g~~~~sl~ell~--~aDvV~l~~Plt~~t~~li~~~ 304 (628)
|+|.||+.+++.++.. +++|.+ +|+. ........ ......++++++. ..|+|+=|.+..+ +.+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~-----~~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA-----VAEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH-----HHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH-----HHHH
Confidence 8999999999999865 677765 4665 11112111 1223458999998 9999998865322 1233
Q ss_pred HHhcCCCCcEEEEcCCCchh---cHHHHHHHHhCC
Q 006864 305 TFAKMKKGVRIVNVARGGVI---DEEALVRALDSG 336 (628)
Q Consensus 305 ~l~~mk~gailIN~aRg~~v---de~aL~~aL~~g 336 (628)
....|+.|.-+|-..-+.+. ..+.|.++.+++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~ 110 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKN 110 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence 44557788888888878877 334444444443
No 474
>PRK06382 threonine dehydratase; Provisional
Probab=90.05 E-value=0.41 Score=52.99 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=50.0
Q ss_pred eecCCcEEEEeccCCCCchhhHHhhhhcCCccccceEEeee---ecCccEEEEEEeCCC--C-CHHHHHHHhcc
Q 006864 554 ASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT---FRRNHGIMAIGVDEE--P-NQDSLKEIGKV 621 (628)
Q Consensus 554 ~~~~~~~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~---~~gg~Al~~i~vD~~--~-~~~~l~~L~~l 621 (628)
..+....+.+..+|+||.+.+|+.+++++++||-.+...|. ...+.+...+.++.. . .++++++|++.
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 34445566678899999999999999999999998887642 234566667777663 3 33778887764
No 475
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.96 E-value=0.33 Score=52.83 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=32.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999886 67777754
No 476
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=89.93 E-value=1.8 Score=40.56 Aligned_cols=96 Identities=22% Similarity=0.337 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCEEEEECCC-----CChhHHHHcCCcccC-HHHHhccCCEEEEcCCCCccccccccHHHHhcCCCCcEEE
Q 006864 243 EVARRAKGLGMNVIAHDPY-----APADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (628)
Q Consensus 243 ~vA~~l~~~G~~V~~~d~~-----~~~~~a~~~g~~~~s-l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailI 316 (628)
..+++|...|++|++=.-. .+.+...+.|+..++ -++++++||+|+-.=|.+ .+.+++|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 4677888889999985432 244556677888775 559999999998765543 56778899999999
Q ss_pred EcCCCchhcHHHHHHHHhCCCeeEEEeeccCC
Q 006864 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTE 348 (628)
Q Consensus 317 N~aRg~~vde~aL~~aL~~g~i~ga~lDV~~~ 348 (628)
-..... ....+++.|.+.++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 876544 577788888888887777776543
No 477
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=89.92 E-value=0.23 Score=43.40 Aligned_cols=61 Identities=18% Similarity=0.343 Sum_probs=40.4
Q ss_pred CeEEEEecChhHHHHHHHHH-cCCCEEE-EE--CCCCChhHHHHcCCccc-CHHHHhcc--CCEEEEcCC
Q 006864 230 KTLAVMGFGKVGSEVARRAK-GLGMNVI-AH--DPYAPADKARAVGVELV-SFDQALAT--ADFISLHMP 292 (628)
Q Consensus 230 ktiGIIGlG~IG~~vA~~l~-~~G~~V~-~~--d~~~~~~~a~~~g~~~~-sl~ell~~--aDvV~l~~P 292 (628)
.++.|+|+|+.|++++.... ..|+++. ++ ||..-- ..-.|+... +++++.+. .|+-++++|
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G--~~i~gipV~~~~~~l~~~~~i~iaii~VP 71 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG--KEIGGIPVYGSMDELEEFIEIDIAIITVP 71 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT--SEETTEEEESSHHHHHHHCTTSEEEEES-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC--cEECCEEeeccHHHhhhhhCCCEEEEEcC
Confidence 47999999999999985543 4555433 34 444211 112255555 78887777 999999999
No 478
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.92 E-value=0.42 Score=51.30 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=44.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCC-------EEEEECCCCCh--hH--HHHc---------CCcc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPYAPA--DK--ARAV---------GVEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~--a~~~---------g~~~-~sl~ell~~aDvV 287 (628)
++|+|||. |.||..+|..|...|. ++..+|..... .. +.++ .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999886664 79999974322 11 1111 0111 2456889999999
Q ss_pred EEcCCC
Q 006864 288 SLHMPL 293 (628)
Q Consensus 288 ~l~~Pl 293 (628)
+++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998753
No 479
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.80 E-value=1 Score=47.46 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~ 261 (628)
.|+++.|+|.|.||...++.++.+|++ |++.|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 477899999999999999999999997 5556654
No 480
>PRK06182 short chain dehydrogenase; Validated
Probab=89.76 E-value=0.95 Score=46.42 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=31.2
Q ss_pred cCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.+|++.|.|. |.||+++|+.|...|++|++.++..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~ 37 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRV 37 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999985 8999999999999999999988764
No 481
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=89.72 E-value=0.72 Score=51.52 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=66.5
Q ss_pred EEEEecChhHHH-HHHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEcCCCCcccc--------
Q 006864 232 LAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS-------- 298 (628)
Q Consensus 232 iGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~-------- 298 (628)
+-|||.|.+|.+ +|+.|+..|.+|.++|..... +..++.|+... .-.+.+.++|+|+..--..+...
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999976432 22334466542 12345678999987532222111
Q ss_pred --ccccHHH-Hhc-CC-CCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 --KIFNDET-FAK-MK-KGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 --~li~~~~-l~~-mk-~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++++-. +.. ++ .-.+-|-=+.|+.--..-+...|+.
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 123 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKE 123 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHH
Confidence 2233322 222 32 2345555567888888888888865
No 482
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.71 E-value=0.69 Score=37.68 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=40.8
Q ss_pred EeccCCCCchhhHHhhhhcCCccccceEEeeeec-CccEEEEEEeCCC-CCHHHHHHHhc
Q 006864 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEE-PNQDSLKEIGK 620 (628)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~-gg~Al~~i~vD~~-~~~~~l~~L~~ 620 (628)
+.-+|+||.+.++.+++++ +.||..++..|... .....+.+++..+ --++++++|++
T Consensus 3 v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 3 VTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred EECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 5678999999999999999 99999998877542 2233445666543 23356666665
No 483
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.70 E-value=1.3 Score=47.26 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=29.6
Q ss_pred cCCeEEEEecChhHHHHHHHHHc-CC-CEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~ 262 (628)
.|.++.|+|.|.||...++.++. +| .+|++.|+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~ 199 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ 199 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 47899999999999999888875 54 6899998764
No 484
>PRK07411 hypothetical protein; Validated
Probab=89.69 E-value=0.41 Score=52.70 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred eeecCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 225 ~~l~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
..|+..+|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46889999999999999999999998886 67778754
No 485
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.37 E-value=0.9 Score=53.25 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=32.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
..||++.|||-|..|...|..|+..|++|.+|++..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 469999999999999999999999999999998653
No 486
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.18 E-value=1 Score=48.42 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=44.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHcCCC-------EEEEECCCCC----hhHHHHcC---------Ccc-cCHHHHhccCCEE
Q 006864 230 KTLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPYAP----ADKARAVG---------VEL-VSFDQALATADFI 287 (628)
Q Consensus 230 ktiGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~----~~~a~~~g---------~~~-~sl~ell~~aDvV 287 (628)
-+|+|||. |.+|+.+|..|...|. ++..+|.... ...+.++. +.. .+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 37999998 9999999999986664 7999997431 11111111 111 2456889999999
Q ss_pred EEcCCC
Q 006864 288 SLHMPL 293 (628)
Q Consensus 288 ~l~~Pl 293 (628)
+++.-.
T Consensus 84 VitAG~ 89 (323)
T TIGR01759 84 LLVGAF 89 (323)
T ss_pred EEeCCC
Confidence 997643
No 487
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.05 E-value=3.5 Score=48.54 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=50.9
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC----------------------hhHHHHcCCcc---------c
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP----------------------ADKARAVGVEL---------V 275 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~g~~~---------~ 275 (628)
-.||++.|||.|..|...|..|+..|++|.+||+... .+.....|++. +
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv 270 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI 270 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence 3689999999999999999999999999999985421 11234456542 2
Q ss_pred CHHHHhccCCEEEEcCCCC
Q 006864 276 SFDQALATADFISLHMPLN 294 (628)
Q Consensus 276 sl~ell~~aDvV~l~~Plt 294 (628)
+++++..+.|.|++++-..
T Consensus 271 ~~~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 271 TLEELQKEFDAVLLAVGAQ 289 (652)
T ss_pred CHHHHHhhcCEEEEEcCCC
Confidence 4566666799999987644
No 488
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.03 E-value=0.39 Score=44.41 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=29.4
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~ 261 (628)
+.+++.|+|+|.+|..+|+.|...|+ ++..+|+.
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 35799999999999999999998897 78888865
No 489
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.85 E-value=1.1 Score=55.23 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=61.9
Q ss_pred CCeEEEEecChhHHHHHHHHHcCCCEEEEECCCCC--------------------------hhHHHHcC----C------
Q 006864 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--------------------------ADKARAVG----V------ 272 (628)
Q Consensus 229 GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--------------------------~~~a~~~g----~------ 272 (628)
-.++.|+|.|++|+.-++.+.++|++ . .++..- .+..+..+ +
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 47899999999999999999999776 2 232110 00000000 0
Q ss_pred ----ccc-C-HHHHhccCCEEEEcCCCCccccccccHH-HHhcCCCCc----EEEEcC
Q 006864 273 ----ELV-S-FDQALATADFISLHMPLNPTTSKIFNDE-TFAKMKKGV----RIVNVA 319 (628)
Q Consensus 273 ----~~~-s-l~ell~~aDvV~l~~Plt~~t~~li~~~-~l~~mk~ga----ilIN~a 319 (628)
.+. . +++.+..+|+++.++-..+.+-.++.++ ..+.||+|. .|+|++
T Consensus 281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 000 1 4578899999999997677788889888 777899998 888876
No 490
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=88.82 E-value=1.1 Score=48.09 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=50.7
Q ss_pred CeEEEEe-cChhHHHHHHHHHcCC-CEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHh
Q 006864 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (628)
Q Consensus 230 ktiGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~ 307 (628)
.+|+||| .|-.|+++.+.|.... +++.......... ..+.+++++++|++++++|-.. ..+...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--------~~~~~~~~~~~DvvFlalp~~~------s~~~~~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--------AAARRELLNAADVAILCLPDDA------AREAVA 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--------ccCchhhhcCCCEEEECCCHHH------HHHHHH
Confidence 4799998 8999999999998765 4655543322111 1234566788999999999331 222222
Q ss_pred c-CCCCcEEEEcC
Q 006864 308 K-MKKGVRIVNVA 319 (628)
Q Consensus 308 ~-mk~gailIN~a 319 (628)
. .+.|+.+||.+
T Consensus 69 ~~~~~g~~VIDlS 81 (313)
T PRK11863 69 LIDNPATRVIDAS 81 (313)
T ss_pred HHHhCCCEEEECC
Confidence 2 25789999987
No 491
>PRK06392 homoserine dehydrogenase; Provisional
Probab=88.79 E-value=1.5 Score=47.28 Aligned_cols=105 Identities=20% Similarity=0.387 Sum_probs=60.3
Q ss_pred eEEEEecChhHHHHHHHHHc--------CCCEEEEE-CCCC--------ChhHH---HHcC----C--cccCHHHHh-cc
Q 006864 231 TLAVMGFGKVGSEVARRAKG--------LGMNVIAH-DPYA--------PADKA---RAVG----V--ELVSFDQAL-AT 283 (628)
Q Consensus 231 tiGIIGlG~IG~~vA~~l~~--------~G~~V~~~-d~~~--------~~~~a---~~~g----~--~~~sl~ell-~~ 283 (628)
+|+|+|||.||+.+++.+.. ++.+|.+. |+.. +.+.. .+.| . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 56676653 4331 11111 1101 1 112466654 46
Q ss_pred CCEEEEcCCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHHHhCC
Q 006864 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSG 336 (628)
Q Consensus 284 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~v-de~aL~~aL~~g 336 (628)
+|+|+=|+|...+-..- -.-..+.|+.|.-+|-..-|.+. ..+.|.++.+++
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 88998888743210101 12223446777777777666665 455666655554
No 492
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.78 E-value=1.5 Score=47.10 Aligned_cols=45 Identities=33% Similarity=0.423 Sum_probs=35.0
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCE-EEEECCCCC-hhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYAP-ADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~-~~~a~~~g~ 272 (628)
.|+++.|.|.|.+|...++.++.+|.+ |++.|+... .+.++++|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 478999999999999999999999985 988887642 233444443
No 493
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=88.71 E-value=1.9 Score=45.68 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=31.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCCEEEEECCCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~ 262 (628)
.|.++.|.|.|.+|+.+++.++++|.+|++.++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 46899999999999999999999999999988753
No 494
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.63 E-value=2.5 Score=50.99 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=70.2
Q ss_pred CeEEEEecChhHHHH-HHHHHcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEcCCCCcccc------
Q 006864 230 KTLAVMGFGKVGSEV-ARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS------ 298 (628)
Q Consensus 230 ktiGIIGlG~IG~~v-A~~l~~~G~~V~~~d~~~~~--~~a~~~g~~~~--sl~ell~~aDvV~l~~Plt~~t~------ 298 (628)
+++.|+|+|.+|.+. |+.|+..|++|.++|..... ...++.|+... ...+.+..+|+|+..--..++..
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 468999999999998 99999999999999975422 22334466543 23356778999987533332221
Q ss_pred ----ccccHHHH-hc-CCC-CcEEEEcCCCchhcHHHHHHHHhCC
Q 006864 299 ----KIFNDETF-AK-MKK-GVRIVNVARGGVIDEEALVRALDSG 336 (628)
Q Consensus 299 ----~li~~~~l-~~-mk~-gailIN~aRg~~vde~aL~~aL~~g 336 (628)
.++.+-+| .. ++. ..+-|-=+.|+.--..-+...|+..
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 22333333 23 332 3455666788888888888888763
No 495
>PLN02740 Alcohol dehydrogenase-like
Probab=88.52 E-value=1.7 Score=47.31 Aligned_cols=45 Identities=31% Similarity=0.588 Sum_probs=35.7
Q ss_pred cCCeEEEEecChhHHHHHHHHHcCCC-EEEEECCCC-ChhHHHHcCC
Q 006864 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (628)
Q Consensus 228 ~GktiGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~g~ 272 (628)
.|.++.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58899999999999999999999999 699988764 2333444443
No 496
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=88.51 E-value=1.5 Score=46.79 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=51.4
Q ss_pred eEEEEe-cChhHHHHHHHHHcCC-CEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEcCCCCccccccccHHHHhc
Q 006864 231 TLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (628)
Q Consensus 231 tiGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~g~~~~sl~ell~~aDvV~l~~Plt~~t~~li~~~~l~~ 308 (628)
+++|+| -|-.|.++.++|.... +++........ +...+.+++++++|++++++|-. ... +....
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~-----~~~~~ 68 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAR-----EAVSL 68 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHH-----HHHHH
Confidence 689997 5999999999998754 56665532211 22335677888999999999933 222 22222
Q ss_pred -CCCCcEEEEcC
Q 006864 309 -MKKGVRIVNVA 319 (628)
Q Consensus 309 -mk~gailIN~a 319 (628)
.+.|+.+||.+
T Consensus 69 ~~~~g~~VIDlS 80 (310)
T TIGR01851 69 VDNPNTCIIDAS 80 (310)
T ss_pred HHhCCCEEEECC
Confidence 35789999987
No 497
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.37 E-value=3.1 Score=46.34 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=67.1
Q ss_pred ecC-CeEEEEecChhHHHHHHHHHcC--CCEEEEECCCCChh--HHHHcCCccc-C--HHHHhccCCEEEEcCCCCcccc
Q 006864 227 LVG-KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPAD--KARAVGVELV-S--FDQALATADFISLHMPLNPTTS 298 (628)
Q Consensus 227 l~G-ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~--~a~~~g~~~~-s--l~ell~~aDvV~l~~Plt~~t~ 298 (628)
+.| |++.|||+|.+|.+.++.|... |++|.++|...... ...+.|++.. . -.+.+.++|+|+..--..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 345 7899999999999999999876 58999999654221 1112265542 1 2234578998877542222211
Q ss_pred ----------ccccHHHH--hcCCCCcEEEEcCCCchhcHHHHHHHHhC
Q 006864 299 ----------KIFNDETF--AKMKKGVRIVNVARGGVIDEEALVRALDS 335 (628)
Q Consensus 299 ----------~li~~~~l--~~mk~gailIN~aRg~~vde~aL~~aL~~ 335 (628)
.++.+-++ ..++.-.+-|-=+-|+.--..-+...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12333222 23443455555567888888877777764
No 498
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.29 E-value=1.3 Score=49.89 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=32.3
Q ss_pred ecCCeEEEEecChhHHHHHHHHHcCCCEEEEECCC
Q 006864 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (628)
Q Consensus 227 l~GktiGIIGlG~IG~~vA~~l~~~G~~V~~~d~~ 261 (628)
-.|+++.|||-|.+|...|..|+..|++|..|+..
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~ 173 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRH 173 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 37899999999999999999999999999999864
No 499
>PRK06128 oxidoreductase; Provisional
Probab=88.25 E-value=2.1 Score=44.73 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=30.6
Q ss_pred eecCCeEEEEec-ChhHHHHHHHHHcCCCEEEEECC
Q 006864 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDP 260 (628)
Q Consensus 226 ~l~GktiGIIGl-G~IG~~vA~~l~~~G~~V~~~d~ 260 (628)
.+.||++.|.|- |.||+++|+.|...|++|+..++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL 87 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 478999999985 89999999999999999987654
No 500
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=88.19 E-value=0.77 Score=54.28 Aligned_cols=67 Identities=7% Similarity=0.115 Sum_probs=51.0
Q ss_pred EEEEeccCCCCchhhHHhhhhcCCccccceEEeeeecCccEEEE--EEeCCCCC-HHHHHHHhcccCcccc
Q 006864 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPN-QDSLKEIGKVHFVARI 627 (628)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INIa~m~v~R~~~gg~Al~~--i~vD~~~~-~~~l~~L~~l~~v~~v 627 (628)
.|.+...|++|+++.|++++++.++||..+++. ..+++.+.+. |++.+.-. ..++.+|+++++|.+|
T Consensus 628 ~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~-~~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V 697 (702)
T PRK11092 628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKV 697 (702)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE-EcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceE
Confidence 344677999999999999999999999999974 3344566555 44444311 2789999999999876
Done!