RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006864
(628 letters)
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 665 bits (1718), Expect = 0.0
Identities = 185/535 (34%), Positives = 276/535 (51%), Gaps = 22/535 (4%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFE 148
P +L+++KL + +A L V + + L + + DAL+VRS T V V
Sbjct: 3 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 62
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
AA KLK+V RAGVG+DNVD+ AAT G LVVNAP +N +AAEH +ALL + +R + A
Sbjct: 63 AAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 121
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
DAS++ W RS + G + GKT+ V+G G++G VA+R G V+A+DPY +A
Sbjct: 122 DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 181
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+G+EL+S D LA ADFIS+H+P P T+ + + E AK K GV IVN ARGG++DE A
Sbjct: 182 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L A+ G V A LDVF EP DS L + V VTPHLGAST EAQ+ ++AE+V
Sbjct: 242 LADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 300
Query: 389 VGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
AL GE A+N V E+AP++ L +KLG LA L S+ + R
Sbjct: 301 RLALAGEFVPDAVNVGGG--VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRG- 355
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPID 508
+ + +LR +G+ + + VNA A ++G+ + SP
Sbjct: 356 -ELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKA--SESPNHR-S 411
Query: 509 SIQVQLSNVDSKFAAAVSENGEISIEGKV--KFGIPHLTRVGSFGVDASLEGNLILCRQV 566
+ V+ ++ +++ G + + ++ D +G ++ V
Sbjct: 412 VVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621
D+PG +GK+G +LG VN+ + + + +D++ D I
Sbjct: 463 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAA 517
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 494 bits (1275), Expect = e-173
Identities = 129/307 (42%), Positives = 195/307 (63%), Gaps = 2/307 (0%)
Query: 89 PKPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF 147
+ +LV+ L E + +L+ G V + L E + +A+IVRS KVTR V
Sbjct: 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVI 61
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
E+A KLKV+ RAGVG+DN+D++AA E G VVNAP A++ + AE + L+ S+AR ++
Sbjct: 62 ESAP-KLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAF 120
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA 267
AD ++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGMN++ +DPY ++A
Sbjct: 121 ADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERA 180
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+ V + V + L +D +++H+PL +T + N+E MKK ++N +RG V+D
Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240
Query: 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEA 387
ALV+AL G +A A LDVF EEP KD L + +NV +TPH+GAST EAQE +E+AE
Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEK 300
Query: 388 VVGALRG 394
VV L+G
Sbjct: 301 VVKILKG 307
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 491 bits (1266), Expect = e-172
Identities = 152/315 (48%), Positives = 203/315 (64%), Gaps = 3/315 (0%)
Query: 82 LNVQAVTPKPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGT 140
L Q++ +L+S+ L IL+ G V +LS E L ++ C+ LIVRS T
Sbjct: 18 LYFQSMANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSAT 77
Query: 141 KVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLAS 200
KVT V AA KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++
Sbjct: 78 KVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMC 136
Query: 201 MARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260
+AR + QA AS+K GKW R K++G L GKTL ++G G++G EVA R + GM I +DP
Sbjct: 137 LARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 196
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320
+ + + GV+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN AR
Sbjct: 197 IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCAR 256
Query: 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGV 380
GG++DE AL+RAL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ
Sbjct: 257 GGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRC 315
Query: 381 AIEIAEAVVGALRGE 395
EIA V ++G+
Sbjct: 316 GEEIAVQFVDMVKGK 330
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 484 bits (1249), Expect = e-168
Identities = 114/370 (30%), Positives = 179/370 (48%), Gaps = 14/370 (3%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTR 144
+ +L+ E + + + +S G + L L + IS + +RS T++T
Sbjct: 13 RDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTE 72
Query: 145 SVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARN 204
+F AAN +L VG VG + V+L+AA + G V NAP +NT + AE I + + R
Sbjct: 73 EIFAAAN-RLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRR 131
Query: 205 VSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+ S AG W ++ + GKTL ++G+G +GS+V A+ LGM V +D
Sbjct: 132 IFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKL 191
Query: 265 DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
S D+ L T+D +SLH+P + +TSK+ + KMKKG ++N ARG +
Sbjct: 192 QYGNV--KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249
Query: 325 DEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGV 380
D EAL + L G +A AA+DVF EP + + L ENV +TPH+G ST+EAQE +
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERI 309
Query: 381 AIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVS----GGS 436
E+ +V + A+N P V ++ + + + L++
Sbjct: 310 GTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHI 369
Query: 437 GIKSVKLIYR 446
I S L
Sbjct: 370 NIASQFLQTD 379
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 465 bits (1200), Expect = e-162
Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 8/331 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+P + V K+ L L+ + +VE + S E L I + D +IV TK+TR V E
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A +LKV+ G DN+DL+ AT+ G V + A AE + L+ ++ R + AD
Sbjct: 62 AE-RLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 210 ASIKAGKWLRSKYVGVS------LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263
I+ G+W + L GK + ++G G +G +ARR G+ + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ + + + D+ L +D + L +PL T I N+E K++ G +VN+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGAL 239
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIE 383
+DE+A+ A+ G + A DVF +EP + +TPH EAQE V
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299
Query: 384 IAEAVVGALRGELSATAINAPMVPSEVLSEL 414
E ++ LRGE+ +N ++ + +
Sbjct: 300 AVENLLKVLRGEVPEDLVNKEVLEVRPIENV 330
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 462 bits (1191), Expect = e-161
Identities = 110/306 (35%), Positives = 176/306 (57%), Gaps = 6/306 (1%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
L+++ + E + LR G V+ + ++S E L I D ++VRS TKVT+ V E
Sbjct: 8 ALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG- 66
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KLK++ RAG+G+DN+D + A + VV AP A+T +A E I L+ + AR + + A
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
K+G + K G+ L GKT+ ++GFG++G++V A +GM V+A+D +KA +
Sbjct: 127 AKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
+ VS ++ L +D ISLH+ ++ I + F MK V IVN +R ++ +AL+
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 332 ALDSGVVAQAALDVFTEEPPAKD--SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
+ G V A DVF EPP ++ +L++HE V VT H+GA TKEAQ+ VA + ++
Sbjct: 245 YIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLL 304
Query: 390 GALRGE 395
A++
Sbjct: 305 NAMKEL 310
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 450 bits (1161), Expect = e-155
Identities = 117/400 (29%), Positives = 187/400 (46%), Gaps = 26/400 (6%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 64 INAAE-KLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 122
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+A+A G + GK L ++G+G +G+++ A+ LGM V +D
Sbjct: 123 EANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE--NKL 180
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
++ L +D +SLH+P NP+T + + + MK G ++N +RG V+D
Sbjct: 181 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 240
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQEGVAI 382
AL AL S +A AA+DVF EP S L + +NV +TPH+G ST+EAQE + +
Sbjct: 241 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGL 300
Query: 383 EIAEAVVGALRGELSATAINAPMVPSE--------VLSELAPYV------VLAKKLGRLA 428
E+A ++ + +A+N P V + E P V + A++ +A
Sbjct: 301 EVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIA 360
Query: 429 VQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGII 468
Q + + + V + + D + + ++A+ G I
Sbjct: 361 AQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAI--PGTI 398
Score = 33.7 bits (78), Expect = 0.17
Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620
++ ++PG++ + I E VN+ + + + + ++ I DE+ + +L+ +
Sbjct: 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKA 393
Query: 621 VHFV--ARIL 628
+ AR+L
Sbjct: 394 IPGTIRARLL 403
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 447 bits (1153), Expect = e-154
Identities = 92/327 (28%), Positives = 158/327 (48%), Gaps = 12/327 (3%)
Query: 88 TPKPTILVSEKL-GEAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRS 145
+ P + + + + IL+ V S + + EK+ ++ ++ +TR
Sbjct: 19 SHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTRE 78
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
E L+++ R G G DN+D+++A + G V N P A+ A+ + + ++ R
Sbjct: 79 DLEKFK-ALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 206 SQADASIKAGKWLRS-------KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
+ +++ G ++S + G+TL ++G G+VG VA RAK G NV+ +
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
Query: 259 DPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
DPY RA+G++ VS L +D ++LH LN + ND T +M++G +VN
Sbjct: 198 DPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPP-AKDSKLVQHENVTVTPHLGASTKEA 376
ARGG++DE+AL +AL G + AALDV EP L N+ TPH +++A
Sbjct: 258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 317
Query: 377 QEGVAIEIAEAVVGALRGELSATAINA 403
+ E A + A+ G + + N
Sbjct: 318 SIEMREEAAREIRRAITGRIPDSLKNC 344
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 419 bits (1079), Expect = e-143
Identities = 94/339 (27%), Positives = 151/339 (44%), Gaps = 15/339 (4%)
Query: 85 QAVTPKPTILVSEKLGEAGLA-ILRSFGN---VECLYDLSPEALCEKISQCDALIVRSG- 139
+ T P L + G+ L S G+ V + L + I LI
Sbjct: 14 EYATKNPNFLGCVE-NALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFH 72
Query: 140 -TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALL 198
VT + A LK++ AG+G D++DLQAA G V +N V+ AE + +
Sbjct: 73 PAYVTAERIKKA-KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRI 131
Query: 199 ASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI 256
+ RN + G+W + Y L GKT+ +G G++G + +R K G N++
Sbjct: 132 LILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLL 191
Query: 257 AHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314
HD + + G + V ++ L D I ++MPL T +FN E K+KKGV
Sbjct: 192 YHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVL 251
Query: 315 IVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374
IVN ARG +++ +A+V A++SG + + DV+ +P KD N +TPH +T
Sbjct: 252 IVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTI 311
Query: 375 EAQEGVAIEIAEAVVGALRGELSATA---INAPMVPSEV 410
+AQ A + + +GE T + + +
Sbjct: 312 DAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQY 350
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 418 bits (1076), Expect = e-143
Identities = 86/350 (24%), Positives = 145/350 (41%), Gaps = 22/350 (6%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRS--GTKVTRS 145
+ + ++ L + G ++ + L + I D +I +T+
Sbjct: 23 CTENKLGIANWLKDQGHELI-----TTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKE 77
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGC--LVVNAPIANTVAAAEHGIALLASMAR 203
+ A KLK+V AGVG D++DL + G V+ +N V+ AEH + + + R
Sbjct: 78 RIDKAK-KLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVR 136
Query: 204 NVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261
N A I W + + GKT+A +G G++G V R + + Y
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY 196
Query: 262 A--PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
P D VG V + ++ +A AD ++++ PL+ T + N E +K KKG +VN
Sbjct: 197 QALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT 256
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT-----VTPHLGAST 373
ARG + E + AL+SG + DV+ +P KD N +TPH +T
Sbjct: 257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
Query: 374 KEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKK 423
+AQ A + G+ + ++ E ++ Y KK
Sbjct: 317 LDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK--AYGKHDKK 364
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 401 bits (1032), Expect = e-136
Identities = 93/389 (23%), Positives = 153/389 (39%), Gaps = 50/389 (12%)
Query: 94 LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK 153
+++++ A G++ L +++ D L+VRS T+V+R+ +
Sbjct: 3 ILADENIPVVDAFFADQGSIRRLPGR--AIDRAALAEVDVLLVRSVTEVSRAALAGS--P 58
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
++ VG +G D++DL E G +AP N ++ + L +MA
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE---------- 108
Query: 214 AGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE 273
G L +T V+G G+VG + +GLG V+ DP +AR E
Sbjct: 109 --------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---QAREPDGE 157
Query: 274 LVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
VS ++ LA AD ISLH PLN T + ++ A ++ G +VN +RG V+D +AL
Sbjct: 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
R L+ G + ALDV+ EP + + TPH+ + E + +I +A
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQ--ADPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYC 275
Query: 390 GALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
+ + +L P A L L +Y
Sbjct: 276 AWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRA-------------VYDPRS 322
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINL 478
D D R++ A+F L
Sbjct: 323 D----DAAFRRSLTGDSATRR--AAFDAL 345
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 399 bits (1028), Expect = e-136
Identities = 93/348 (26%), Positives = 160/348 (45%), Gaps = 25/348 (7%)
Query: 93 ILVS----EKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALI-VRSGTKVTRS 145
I V + + + L V+ + L +++ +AL+ +R T+VTR
Sbjct: 5 IAVLDDYQDAVRKLDCFSLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQ 64
Query: 146 VFEAANGKLKVVGRAGV----GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASM 201
+ + KLK++ + G ++DL+A T+ G +V+ + VA AE AL+ +
Sbjct: 65 LLDRLP-KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGK-GSPVAPAELTWALVMAA 122
Query: 202 ARNVSQADASIKAGKWLRSKY----------VGVSLVGKTLAVMGFGKVGSEVARRAKGL 251
R + Q AS+K G W +S +G L G+TL + G+GK+G VA +
Sbjct: 123 QRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAF 182
Query: 252 GMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMK 310
GMNV+ ++ARA G + S D +D +S+H+ LN T I +MK
Sbjct: 183 GMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMK 242
Query: 311 KGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
VN +R +++E +V AL+ G AA+DVF EP + L++ EN TPH+G
Sbjct: 243 PTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIG 302
Query: 371 ASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV 418
+E+ E + ++ L+G + + N + ++ +
Sbjct: 303 YVERESYEMYFGIAFQNILDILQGNVD-SVANPTALAPALIRAEGHHH 349
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 400 bits (1030), Expect = e-135
Identities = 89/343 (25%), Positives = 145/343 (42%), Gaps = 13/343 (3%)
Query: 83 NVQAVTPKPTILVSEKLGEAGLA-ILRSFGN---VECLYDLSPEALCEKISQCDALIVRS 138
+A+ P L+ GE GL L S G+ V D ++ D +I +
Sbjct: 38 TPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQP 97
Query: 139 G--TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIA 196
+T A LK+ AG+G D+VDLQ+A + V N+++ AEH +
Sbjct: 98 FWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVM 156
Query: 197 LLASMARNVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254
++ S+ RN + + G W + V L + + G++G V RR ++
Sbjct: 157 MILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVH 216
Query: 255 VIAHDPY-APADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKG 312
+ D + P + + + + + D ++L+ PL+P T + NDET K+G
Sbjct: 217 LHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRG 276
Query: 313 VRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372
IVN ARG + D +A+ RAL+SG +A A DV+ +P KD +TPH+ +
Sbjct: 277 AYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGT 336
Query: 373 TKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
T AQ A E + G +V L+
Sbjct: 337 TLTAQARYAAGTREILECFFEGRPIRDEYL--IVQGGALAGTG 377
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 391 bits (1006), Expect = e-133
Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 15/279 (5%)
Query: 122 EALCEKISQCDALIVR----SGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGC 177
E + D + +V + + + K++ G+D++D+ E
Sbjct: 15 EIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGK-RTKMIQAISAGVDHIDVNGIPENVV 73
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237
L NA A +++ AEH ALL + A+N+ + + +KAG + +S L GK L ++G+
Sbjct: 74 LCSNAG-AYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGY 130
Query: 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297
G +G VA AK GM VIA+ + V S +DF+ + +PL T
Sbjct: 131 GGIGRRVAHLAKAFGMRVIAYTRSSVDQNV---DVISESPADLFRQSDFVLIAIPLTDKT 187
Query: 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKL 357
+ N A +K + IVNVAR V+ + ++ L DV+ EP ++ L
Sbjct: 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL 247
Query: 358 VQHENVTVTPHLGASTKEAQEGVAIEIA-EAVVGALRGE 395
N ++PH+ +AI++A E V GE
Sbjct: 248 ---RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 383 bits (986), Expect = e-129
Identities = 87/366 (23%), Positives = 145/366 (39%), Gaps = 46/366 (12%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
ILV E + + G V+ E+++ DAL+VRS TKV S+
Sbjct: 6 ILVDENM-PYARELFSRLGEVK--AVPGRPIPVEELNHADALMVRSVTKVNESLLSGTP- 61
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+ VG A G D+VD + G AP N +A E+ + L +A
Sbjct: 62 -INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD------- 113
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
G SL +T+ ++G G VGS + R + LG+ + DP AR
Sbjct: 114 -----------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AARGDEG 159
Query: 273 ELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+ + D+ + AD ++ H PL T + ++ ++K G ++N RG V+D A
Sbjct: 160 DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAA 219
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L+ L++G LDV+ EP + L++ ++ T H+ T E + ++ EA
Sbjct: 220 LLARLNAGQPLSVVLDVWEGEPD-LNVALLEAVDI-GTSHIAGYTLEGKARGTTQVFEAY 277
Query: 389 VGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
+ E ++P+ + + L + + LV Y
Sbjct: 278 SAFIGREQRVALET--LLPAPEFGRITLHGPLDQPTLKRLAHLV------------YDVR 323
Query: 449 RDPDDL 454
RD L
Sbjct: 324 RDDAPL 329
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 371 bits (956), Expect = e-125
Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 14/328 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
P ++++ ++ E L +L + L+ E + + A++ +V
Sbjct: 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADF 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+A +L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 62 LQAC-PELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 207 QADASIKAGKW--LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
ADA +++GK+ + ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G+ V+ + A++DFI L +PLN T + N E A ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKEA 376
+DE A++ AL+ G + A DVF E P D L+ H N TPH+G++ +
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 377 QEGVAIEIAEAVVGALRGELSATAINAP 404
+ + A+ ++ AL GE A+N
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVNRL 328
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 358 bits (922), Expect = e-120
Identities = 112/339 (33%), Positives = 187/339 (55%), Gaps = 17/339 (5%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
KP + ++ ++ E G+ +L VE D + E L +K+ + DAL+ ++ + V
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
FE A KL++V VG DN+D++ AT+ G V N P T A A+ ALL + AR+V
Sbjct: 62 FENAP-KLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 207 QADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+ D +++G+W + ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 260 PYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ R + E + L +DF+ L +PL T + N+E MKK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG V+D ALV+AL G +A A LDVF EEP + +L + +NV +TPH+G+++ A+EG
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREG 299
Query: 380 VAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV 418
+A +A+ ++ RGE+ T +N EV+ P
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVNR-----EVIKIRKPGF 333
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 343 bits (882), Expect = e-114
Identities = 83/313 (26%), Positives = 145/313 (46%), Gaps = 18/313 (5%)
Query: 112 NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQA 171
+++ + ++ + + + V K+T + LK++ VG D++DL
Sbjct: 24 SLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPR-LKLIHTRSVGFDHIDLDY 82
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGK 230
+ G LV + P + + AEH A++ ++ + + + + +K + S+ + L
Sbjct: 83 CKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRL 142
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLH 290
TL V+G G++GS VA GM V+ +D + + G S D+ L +D ISLH
Sbjct: 143 TLGVIGTGRIGSRVAMYGLAFGMKVLCYDVV-KREDLKEKGCVYTSLDELLKESDVISLH 201
Query: 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350
+P T + N+E + MK GV ++N ARG V+D +AL RA G + LDVF +E
Sbjct: 202 VPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE 261
Query: 351 P---------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395
K +L +NV +TPH+ T ++ E + E + V ++G+
Sbjct: 262 ILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGD 321
Query: 396 LSATAINAPMVPS 408
L N + PS
Sbjct: 322 LEQIKGNFVVGPS 334
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 340 bits (874), Expect = e-113
Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 15/304 (4%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
VE L D ++V +A A+ + + VG+DN+D+
Sbjct: 29 VEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAK 88
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT 231
A E G + N P+ + A AEH A + R D + + +G + +
Sbjct: 89 AKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQV 148
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHM 291
+ V+G G +G + +G G VI +D + + G + S D AD ISLH+
Sbjct: 149 VGVVGTGHIGQVFMQIMEGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHV 207
Query: 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351
P P + NDE+ AKMK+ V IVNV+RG ++D +A++R LDSG + A+DV+ E
Sbjct: 208 PDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG 267
Query: 352 -------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398
A+ + L+ NV VTP T A + ++ + + + G+ +
Sbjct: 268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE 327
Query: 399 TAIN 402
T +
Sbjct: 328 TPVK 331
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 339 bits (872), Expect = e-112
Identities = 80/307 (26%), Positives = 132/307 (42%), Gaps = 17/307 (5%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
+E + E E D + T VFE +K + VG DN+D+ A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGK 230
++G + N P + A AE + + RN+ + A ++AG + ++G L +
Sbjct: 87 MKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQ 146
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLH 290
T+ VMG G +G + KG G VIA+DPY K + VS + +D I LH
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLH 204
Query: 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350
+P + I N+ F MK G ++N AR +ID +A++ L SG +A +D + E
Sbjct: 205 VPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264
Query: 351 P-------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397
+L+ NV ++PH+ T+ A + + +V L +
Sbjct: 265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324
Query: 398 ATAINAP 404
+T + P
Sbjct: 325 STEVTGP 331
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 325 bits (835), Expect = e-107
Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 18/299 (6%)
Query: 119 LSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQAATEFGC 177
L+ + E + DA+I+R + + +K + G D++D + A E G
Sbjct: 34 LNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGF 93
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY-VGVSLVGKTLAVMG 236
+ P + A AE + + R+ + + + + + T+ V+G
Sbjct: 94 PMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVG 153
Query: 237 FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT 296
G++G A+ G+G VI D + K VS D+ L +D I++H P
Sbjct: 154 LGRIGRVAAQIFHGMGATVIGEDVFE--IKGIEDYCTQVSLDEVLEKSDIITIHAPYIKE 211
Query: 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP------ 350
+ + KMK G +VN ARG ++D EA++ A++SG + DV E
Sbjct: 212 NGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKD 271
Query: 351 --------PAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401
P + + + V +TPHLG+ T EA + + + + I
Sbjct: 272 LEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 322 bits (828), Expect = e-106
Identities = 95/314 (30%), Positives = 151/314 (48%), Gaps = 9/314 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K IL++ L EA +A R +V D ++ + + E DAL++ K + V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+ +K + +G D++DL A G V NAP TVA AE + LL AR
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG 120
Query: 207 QADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-- 261
+ + I+ W + VG L KTL + GFG +G +A+RA+G M++ D +
Sbjct: 121 EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180
Query: 262 APADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
+ +D+A S D L+ + F SL+ P P T FN T + +G +VN ARG
Sbjct: 181 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381
++D E +V AL++G +A A DVF EP + N + PH+G++ +A+E +A
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 382 IEIAEAVVGALRGE 395
+ + + G
Sbjct: 300 HQANDLIDALFGGA 313
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 319 bits (821), Expect = e-105
Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 13/309 (4%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+LV+ L L LR G ++ L L +++ LI ++ V +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A LKV+ VG+D+VDL+AA E G V + P T A A+ +ALL ++AR V +
Sbjct: 63 A-KGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 210 ASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
A + G W +G+ L G TL ++G G++G VA+RA GM V+ H
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR-----T 176
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
+ + +S ++ L AD +SLH PL P T ++ N E MK+G ++N ARG ++D
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386
EALV AL G + A LDV EP L N +TPH+G++ + +E +A E
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
Query: 387 AVVGALRGE 395
++ L G
Sbjct: 296 NLLAVLEGR 304
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 315 bits (810), Expect = e-103
Identities = 63/313 (20%), Positives = 113/313 (36%), Gaps = 22/313 (7%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+ V+ +L LR + + DL + +++T
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDL------------GNVEAALVSRITAEELAKMP- 49
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK + G+D++ ++ V +N A AE +ALL + + + Q +
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K G + R + G+ +AV+G G++G+ V + LG V
Sbjct: 109 KRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG----PWR 163
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
S ++AL A +PLN T + + A M + VNV R V+D + ++R
Sbjct: 164 FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRI 223
Query: 333 LDSGVVAQAALDVFT-EEPPAKDSKLVQHENVTVTPHLGAST--KEAQEGVAIEIAEAVV 389
L A DV+ AKD++ NV TP + + + +E ++
Sbjct: 224 LKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLI 283
Query: 390 GALRGELSATAIN 402
G
Sbjct: 284 TYATGGRPRNIAK 296
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 309 bits (794), Expect = e-101
Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 9/324 (2%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLYD-----LSPEALCEKISQCDALIVRSGTKV 142
+ V+ ++ G L + E + + L ++ L+ V
Sbjct: 6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 65
Query: 143 TRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMA 202
+ + +AA LKV+ VGID++ L + G V P T AE ++LL +
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 203 RNVSQADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
R + +A +K G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 260 PYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
P ++A E VS + A +DFI + L P T + N + F KMK+ +N+
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQE 378
+RG V++++ L +AL SG +A A LDV + EP + L+ +N + PH+G++T +
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 379 GVAIEIAEAVVGALRGELSATAIN 402
+++ A ++ LRGE + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSELK 329
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 293 bits (752), Expect = 2e-94
Identities = 78/320 (24%), Positives = 150/320 (46%), Gaps = 7/320 (2%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRS 145
P + + A A LR ++E + L+P + + + L V + +T
Sbjct: 27 PIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAE 86
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
V LK + VG D++D+ AA G V++ P + A AE + L+ + R
Sbjct: 87 VIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRG 146
Query: 206 SQADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262
+AD +++G W +G+ L G+ L + G G++G +A RA+G G+ + H+
Sbjct: 147 YEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR 206
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+ + + D L +D + P P + + AK+ +G ++N++RG
Sbjct: 207 LSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGD 266
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAI 382
+I+++AL+ AL S + A LDVF EP D + +N+ +TPH+G++T E ++ +
Sbjct: 267 LINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSATHETRDAMGW 325
Query: 383 EIAEAVVGALRGELSATAIN 402
+ + + + ++ I+
Sbjct: 326 LLIQGIEALNQSDVPDNLIS 345
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 291 bits (748), Expect = 9e-94
Identities = 91/345 (26%), Positives = 150/345 (43%), Gaps = 26/345 (7%)
Query: 89 PKPTILVS---EKLGEAGLAILRSFGNVECLYDLSPEALCE-----KISQCDALIVRSGT 140
P+P +L+ + + + + V + + + + +A+I +
Sbjct: 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVE 61
Query: 141 KVTRS------VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHG 194
T S + LKV AG G D +DL A E G N+ A A ++
Sbjct: 62 NGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLA 121
Query: 195 IALLASMARNVSQADASIKAGKW-------LRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247
+ L+ S+ R S ++ + + G L + G L +G G + E+AR+
Sbjct: 122 LYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARK 181
Query: 248 A-KGLGMNVIAHDPY-APADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDE 304
A GLGM ++ +D A A+ +A+G E V S ++ +D +S+ +P T + ++
Sbjct: 182 AVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241
Query: 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT 364
FA MK G RIVN ARG VI ++AL+ AL SG + A LDV EP +L++ ++VT
Sbjct: 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVT 300
Query: 365 VTPHLGASTKEAQEGVAIEIAEAVVGALR-GELSATAINAPMVPS 408
+T H+G E + L G+ T PS
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS 345
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 281 bits (721), Expect = 4e-90
Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 3/303 (0%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+L+++ L L++ + + + Q + + + + + N
Sbjct: 4 VLMAQATKPEQLQQLQTTY-PDWTFKDAAAVTAADYDQIEVMYG-NHPLLKTILARPTN- 60
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK V G+D + L+A G +V N + A +E +A + S+ R A +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
+ + +L G+ L + G G++G +A +A LGM+VI + V
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+ ALATA+FI +PL PTT +F+ E F + K+ ++N+ RG +D AL+ A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
LD ++ AALDV EP D L Q ++V +TPH+ + V A +
Sbjct: 241 LDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFV 300
Query: 393 RGE 395
+
Sbjct: 301 KDG 303
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 260 bits (667), Expect = 7e-82
Identities = 85/316 (26%), Positives = 140/316 (44%), Gaps = 8/316 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSVFE 148
KP +L+ E + + L+ +V LY AL + A+ G ++ E
Sbjct: 30 KPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWME 89
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
L ++ GVG D VDL A V P A+ GIAL+ ++ R V
Sbjct: 90 KLP-SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDG 148
Query: 209 DASIKAGKWLRSKY--VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
D ++ G+W + +G S GK + V+G G++G +A RA+ GM+V + +
Sbjct: 149 DRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNR---STL 205
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
+ + S +D +++ + + T I + + +VNVARG V+DE
Sbjct: 206 SGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDE 265
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386
+AL+ AL SG +A A LDVF EP S+ N + PH G++T E + + +
Sbjct: 266 DALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLA 324
Query: 387 AVVGALRGELSATAIN 402
+ GE + +N
Sbjct: 325 NLAAHFAGEKAPNTVN 340
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 257 bits (660), Expect = 6e-81
Identities = 75/310 (24%), Positives = 128/310 (41%), Gaps = 8/310 (2%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSV 146
+L+ + L + + + L + A++ S +
Sbjct: 22 EAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAEL 81
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+A KL++V VG+D VDL E G V N P T A+ I L+ ++ R +
Sbjct: 82 IDALP-KLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 207 QADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265
+ D ++ G W + + GK + ++G G++G VA RA+ + +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
S + + +D + + PL P T+ I N E + ++N+ RG +D
Sbjct: 201 TNYT---YYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVD 257
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
E LV AL G + A LDVF EP KL ENV + PH+G+ T E ++ +A +
Sbjct: 258 EPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVV 316
Query: 386 EAVVGALRGE 395
+ G+
Sbjct: 317 GNLEAHFSGK 326
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 199 bits (507), Expect = 1e-58
Identities = 71/288 (24%), Positives = 115/288 (39%), Gaps = 12/288 (4%)
Query: 90 KPTILVSEKLGEAGLAILRS--FGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF 147
+ T+L+ + +L++ ++ L + + I + L+ + +
Sbjct: 5 QRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAE--PARAKPLL 62
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
AN KL G+D + L A + N +E+ L S+ R +
Sbjct: 63 AKAN-KLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPL 120
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPAD 265
K W Y L G+TL ++G G +G +A K GM V+ A
Sbjct: 121 YREQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG 178
Query: 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
+ + + ++ LA AD I +P T +F F K G + NV RG I+
Sbjct: 179 FDQVYQLP--ALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
E L+ AL +G + A LDVF +EP DS L N+ +TPH A +
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS 284
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 185 bits (471), Expect = 1e-53
Identities = 60/255 (23%), Positives = 102/255 (40%), Gaps = 14/255 (5%)
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAA------AEHGIALLASMA 202
A +LK V G G+D + + L + P+ E+ ++ +
Sbjct: 55 LAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWF 114
Query: 203 RNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDP 260
R A W + ++ +MG G +G++VA + G + +
Sbjct: 115 RRFDDYQALKNQALWKPLPEY--TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR 172
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320
+ VG E L + +P T I N E ++ G ++N+AR
Sbjct: 173 KSWPGVESYVGRE--ELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLAR 230
Query: 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGV 380
G + E L+ ALDSG + A LDVF++EP ++S L +H V +TPH+ A T+
Sbjct: 231 GVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEA 288
Query: 381 AIEIAEAVVGALRGE 395
I+ + +GE
Sbjct: 289 IDYISRTITQLEKGE 303
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 81.9 bits (202), Expect = 3e-17
Identities = 40/264 (15%), Positives = 81/264 (30%), Gaps = 28/264 (10%)
Query: 95 VSEKLGEAGLAILRSFGNVECLYDLSPEALC----EKISQCDALIVRSGTKVTRSVFEAA 150
+ KL A + G + + DA+++
Sbjct: 20 IIRKLSTFD-AKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPI-------SGTNE 71
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVV--NAPIANTVAAAEHGIALLASMARNVSQA 208
GK+ + + ++ T C+V + + L+ M R+
Sbjct: 72 AGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAI 131
Query: 209 DASIKAGKW---LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD-PYAPA 264
SI + + ++ ++ G +AV+G G+VG VAR+ LG V
Sbjct: 132 YNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLL 191
Query: 265 DKARAVGVELVSFD---QALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
+ +G+E Q L D +P + + A+M ++++A
Sbjct: 192 ARIAEMGMEPFHISKAAQELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASK 246
Query: 322 GVIDEEALVRALDSGVVAQAALDV 345
+ G+ A +
Sbjct: 247 PGGTDFRYAEKR--GIKALLVPGL 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 8e-14
Identities = 110/603 (18%), Positives = 189/603 (31%), Gaps = 218/603 (36%)
Query: 52 YTTPPSFTISN-SLQTALETSE---LHVSKFQDDLNVQAVTPKPTI-------------L 94
Y+T P T+S+ SL+ L S+ Q+ + P+PT L
Sbjct: 4 YSTRP-LTLSHGSLEHVLLVPTASFFIASQLQEQF--NKILPEPTEGFAADDEPTTPAEL 60
Query: 95 VSEKLG---------EAG------LAILRSF------GN-----VECLYDLSPEALCEK- 127
V + LG + G L F GN L + L +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 128 -ISQC--DALIV--RSGTKVTRS-VFEAAN-GKLKVV---GRAGVGIDNV---DLQAA-T 173
+ + A I+ R K + S +F A G ++V G G G + +L+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEELRDLYQ 178
Query: 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAG----KWLRSK-------- 221
+ LV + A L+ + R A+ G +WL +
Sbjct: 179 TYHVLV--GDLIKFSAE------TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 222 --YVGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVELVSF 277
+ +S + + + V + G + P + ++ G S
Sbjct: 231 LLSIPISCPLIGVIQLAHY-----VVTAKLLG----------FTPGELRSYLKGATGHS- 274
Query: 278 DQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALD--- 334
Q L TA I+ T S E+F ++ +A+
Sbjct: 275 -QGLVTAVAIAE------TDS----WESF-------------------FVSVRKAITVLF 304
Query: 335 -SGVVAQAALDVFTEEPPA-KDSKLVQHENVTVTPHL---GASTKEAQEGVA-------- 381
GV A + P +DS +++ +P L + ++ Q+ V
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDS--LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 382 ---IEIA------EAVV-G---ALRG-ELSATAINAPM------VP-SE---VLSE--L- 414
+EI+ VV G +L G L+ AP +P SE S L
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 415 --APY--VVLAKKLGRLAVQLVSGGSGIKSVKL---IYRSARDPDDLDTRILRAMITKGI 467
+P+ +L + LV + + +Y D DL R+L I++ I
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDL--RVLSGSISERI 479
Query: 468 IEPISASFINLVNA---------DF-----------TAKQK---GLRISEERVVA---DS 501
++ I + DF T + K G+R+ +VA D
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV----IVAGTLDI 535
Query: 502 SPE 504
+P+
Sbjct: 536 NPD 538
Score = 54.7 bits (131), Expect = 9e-08
Identities = 63/351 (17%), Positives = 105/351 (29%), Gaps = 134/351 (38%)
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
LY S A + V+ A+ + G +D
Sbjct: 1635 LYKTSKAA--------------------QDVWNRADNHF----KDTYGFSILD------- 1663
Query: 176 GCLVVNAPIANTVA-AAEHGIAL---LASMARNVSQADASIKAGKWLR------SKYVGV 225
+V+N P+ T+ E G + ++M + D +K K + + Y
Sbjct: 1664 --IVINNPVNLTIHFGGEKGKRIRENYSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 226 S---LVGKT------LAVMGFGKVGSEVAR----RAKGLGMNVIAHDPYAPADKARA--- 269
S L+ T L +M E A ++KGL PAD A
Sbjct: 1721 SEKGLLSATQFTQPALTLM-------EKAAFEDLKSKGL----------IPADATFAGHS 1763
Query: 270 VGVELVSFDQAL-ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+G E AL + AD +S V +V RG +
Sbjct: 1764 LG-EYA----ALASLADVMS------------IES--------LVEVVF-YRGMTMQVAV 1797
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV-TVTPHLGASTKEAQEGVAIEIA-- 385
L A++ P + + E + V +G T G +EI
Sbjct: 1798 PRDELGRSNYGMIAIN------PGRVAASFSQEALQYVVERVGKRT-----GWLVEIVNY 1846
Query: 386 ----EAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAK-KLGRLAVQL 431
+ V A G+L A + + ++ + ++ L K + L L
Sbjct: 1847 NVENQQYVAA--GDLRA-------L--DTVTNVLNFIKLQKIDIIELQKSL 1886
Score = 51.6 bits (123), Expect = 9e-07
Identities = 86/472 (18%), Positives = 154/472 (32%), Gaps = 151/472 (31%)
Query: 180 VNA----PIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVM 235
++A P+ + + EH + + + SQ L+ ++ L T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQ----------LQEQFNK-ILPEPTEGFA 49
Query: 236 GFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQA-LATADFISLHMP 292
+ + K LG ++ +P + + + L F+ L D +L
Sbjct: 50 ADDEPTTPAELVGKFLGY--VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 293 LNPTTSKIFNDETFAKMKKGVRIVNVAR---GGVIDEE---ALVRALDSG---VVAQ--- 340
L ND T K K+ ++ AR D++ AL RA+ G +VA
Sbjct: 108 LLQE-----NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 341 --AALDVFTE--------EPPAKDSKLVQHENVTVTPHLGASTKEAQ----EGVAIEIAE 386
D F E D L++ T++ L +T +A+ +G+ I
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGD--LIKFSAETLSE-LIRTTLDAEKVFTQGLNI---- 215
Query: 387 AVVGALRGE--------LSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGI 438
+ L L + I+ P++ + +LA YVV AK LG
Sbjct: 216 --LEWLENPSNTPDKDYLLSIPISCPLI---GVIQLAHYVVTAKLLG------------- 257
Query: 439 KSVKLIYRSARDPDDLDTRILRAMIT--KGIIEPISASFINLVN--ADF-TAKQKGLRIS 493
P +L L+ +G+ ++A I + F + +K + +
Sbjct: 258 ----------FTPGEL-RSYLKGATGHSQGL---VTAVAIAETDSWESFFVSVRKAITVL 303
Query: 494 ----------------EERVVADS--------SPEFPIDSI-QVQLSNVDSKFAAAVSEN 528
++ DS SP I ++ Q Q+ + +K + +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 529 GEISIE---GKVKF---GIPHLTRVGSFGVDASLEG-NLILCRQ-----VDQ 568
++ I G G P SL G NL L + +DQ
Sbjct: 364 KQVEISLVNGAKNLVVSGPP-----------QSLYGLNLTLRKAKAPSGLDQ 404
Score = 42.0 bits (98), Expect = 7e-04
Identities = 53/284 (18%), Positives = 88/284 (30%), Gaps = 104/284 (36%)
Query: 31 SFLHNTKPKPISLKFS----SHNSNYTTPPSFTISNSLQTALETSE------LHVSKFQD 80
SF + + K I++ F + P + + L+ +LE +E L +S
Sbjct: 291 SFFVSVR-KAITVLFFIGVRCYE---AYPNTSLPPSILEDSLENNEGVPSPMLSIS---- 342
Query: 81 DLNVQAVTPKPTI-LVSEKLGEAG-LAI-L----RSF---GNVECLYDLSPEALCEKISQ 130
+L + V + + + L + I L ++ G + LY L+ K
Sbjct: 343 NLTQEQV--QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT--LRKAK- 397
Query: 131 CDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAA 190
SG +R F KLK R F L V +P
Sbjct: 398 -----APSGLDQSRIPFSER--KLKFSNR---------------F--LPVASP------- 426
Query: 191 AEHGIALLAS----MARNVSQADASIKA------------GKWLR--SKYVGVSLV---- 228
H LL + +++ + + S A G LR S + +V
Sbjct: 427 -FHS-HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 229 -----------GKTLAVMGFG-----KVGSEVARRAKGLGMNVI 256
K ++ FG +G R G G+ VI
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 39.3 bits (91), Expect = 0.005
Identities = 38/184 (20%), Positives = 58/184 (31%), Gaps = 60/184 (32%)
Query: 35 NTKPKPISLKFSSHNSNYT-TPP-------SFTISNSLQTALETSELHVSKFQDDLNVQA 86
K + I + + H+++YT FT Q AL E + F+D L +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-----QPALTLME--KAAFED-LKSKG 1751
Query: 87 VTPKPTILV--SEKLGE-------AG-------LAILR---SFGNVECLYD--------- 118
+ P S LGE A + ++ V D
Sbjct: 1752 LIPADATFAGHS--LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 119 --LSPEALCEKISQCDAL--IVRSGTKVTRSVFEAAN----GKLKVVGRAGVGIDNVDLQ 170
++P + SQ +AL +V K T + E N + V AG D L
Sbjct: 1810 IAINPGRVAASFSQ-EALQYVVERVGKRTGWLVEIVNYNVENQQYVA--AG---DLRALD 1863
Query: 171 AATE 174
T
Sbjct: 1864 TVTN 1867
Score = 38.1 bits (88), Expect = 0.011
Identities = 37/240 (15%), Positives = 71/240 (29%), Gaps = 90/240 (37%)
Query: 7 SSSSIKPIFTTRSKSSNSSKS-SLLSFLHNTKPKPISLKFSSHNS-----NYTTPPSFTI 60
+S + + ++ + S+L + N P +++ F NY+ +
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVIN-NPVNLTIHFGGEKGKRIRENYS---AMIF 1693
Query: 61 SNSLQTALETSEL------HVSKF-----QDDLNVQAVTPKPTILVSEKLGEAGLAILRS 109
+ L+T ++ H + + + L+ T +P + + EK A L+S
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QPALTLMEK---AAFEDLKS 1749
Query: 110 FGNV------------ECLYDLSPEALCEKISQCDALIVRSGTKVTRSV--FEAANGKLK 155
G + E Y + AL A V E+ ++
Sbjct: 1750 KGLIPADATFAGHSLGE--Y--A--ALA-----SLA-----------DVMSIESL---VE 1784
Query: 156 VV---GRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
VV G + V E G + +A N + AS
Sbjct: 1785 VVFYRGMT-----------------------MQVAVPRDELGRSNYGMIAINPGRVAASF 1821
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 54.0 bits (130), Expect = 5e-08
Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 27/229 (11%)
Query: 126 EKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVV--NAP 183
Q D++I+ G + V + D T C++ +
Sbjct: 56 IPFQQIDSIILPV-------SATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISN 108
Query: 184 IANTVAAAEHGIALLASMAR-NVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKV 240
AA+ L+ R +++ ++ + ++ ++ G +AV+G G+
Sbjct: 109 AYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRT 168
Query: 241 GSEVARRAKGLGMNV--IAHDPY--APADKARAVGVELVSFDQALATADFISLHMPLNPT 296
G +AR LG NV A A + V + + D +N
Sbjct: 169 GMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDIC-----INTI 223
Query: 297 TSKIFNDETFAKMKKGVRIVNVA--RGGVIDEEALVRALDSGVVAQAAL 343
S I N + M I+++A GG + A + G+ A A
Sbjct: 224 PSMILNQTVLSSMTPKTLILDLASRPGGTDFKYAEKQ----GIKALLAP 268
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 47.6 bits (114), Expect = 8e-06
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GKT V G+G VG A +G G V+ DP A +A G +++ + +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPIN-ALQAAMEGYQVLLVEDVVE 265
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
A F++ TT I E F +M+ + N+
Sbjct: 266 EAHIFVT-------TTGNDDIITSEHFPRMRDDAIVCNI 297
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 47.6 bits (114), Expect = 8e-06
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
+ GK + V G+G+VG K +G V DP A +A G LV ++ +
Sbjct: 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC-ALQACMDGFRLVKLNEVIR 274
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
D I+ T + E +MK + N+
Sbjct: 275 QVDIVIT-------CTGNKNVVTREHLDRMKNSCIVCNM 306
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 2e-05
Identities = 39/227 (17%), Positives = 66/227 (29%), Gaps = 52/227 (22%)
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
E+A V D V + ++E D ++ + V+ T L + QE + +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQ 80
Query: 386 EAVVGALRGELS--ATAI----NAPMVPSEVLSE-----------LAPYVV--------L 420
+ V LR + I P + + + E A Y V L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 421 AKKLGRLAVQ---LVSG--GSGIKSVKLIYRSARDPDDLDTRILRAM------ITKGIIE 469
+ L L L+ G GSG K+ + ++ M +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSG-KTW-VALDVCL-----SYKVQCKMDFKIFWLNLKNCN 193
Query: 470 PISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSN 516
L + R S+ + I SIQ +L
Sbjct: 194 SPETVLEMLQKLLYQIDPNW----TSRSDHSSNIKLRIHSIQAELRR 236
Score = 46.8 bits (110), Expect = 2e-05
Identities = 60/418 (14%), Positives = 110/418 (26%), Gaps = 138/418 (33%)
Query: 12 KPIFTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFTISNSLQTALETS 71
K + TTR K + FL ISL S + T L
Sbjct: 267 KILLTTRFK-------QVTDFLSAATTTHISLDHHS--------MTLTPDEVKS--LLLK 309
Query: 72 ELHVSKFQDDLNVQAVTPKPTI--LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKIS 129
L DL + +T P +++E + + GLA ++ +V C + L I
Sbjct: 310 YLDCRP--QDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNC------DKLTTIIE 360
Query: 130 QC-DALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTV 188
+ L R +F+ +A I +
Sbjct: 361 SSLNVL----EPAEYRKMFD-------------------------RLSVFPPSAHIPTIL 391
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
++L+ W V +V L S V ++
Sbjct: 392 ------LSLI------------------WFDVIKSDVMVVVNKLHKY------SLVEKQP 421
Query: 249 KGLGMNVIAHDPY----APADKARAVGVELVSFDQALATAD---------------FISL 289
K +++ Y + A+ +V T D I
Sbjct: 422 KESTISI--PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 290 HM-PLNPTT-----SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAAL 343
H+ + +F D F + K +R + A ++ L
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQLKF------YK 531
Query: 344 DVFTEEPPAKDSK-------LVQHE-NVTVTPH-----LGASTKEAQEGVAIEIAEAV 388
+ P + L + E N+ + + + ++ E + E + V
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQV 587
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 45.1 bits (106), Expect = 3e-05
Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 14/186 (7%)
Query: 229 GKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPY-APADKARAVGVELVSFDQALATADF 286
KT+A++G GK+G+ + R+ ++ A + D+ + +G+ L D + AD
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70
Query: 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA---- 342
+ L +P + ++ +++ G ++ + ++
Sbjct: 71 VVLALP--DNIIEKVAEDIVPRVRPGTIVLIL--DAAAPYAGVMPERADITYFIGHPCHP 126
Query: 343 ---LDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ-EGVAIEIAEAVVGALRGELSA 398
D + + + G A + + V R
Sbjct: 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQ 186
Query: 399 TAINAP 404
AI P
Sbjct: 187 LAILEP 192
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 45.4 bits (108), Expect = 4e-05
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ G G V DP A +A G E+V+ D A +
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
TAD ++ TT + + KMK + N+
Sbjct: 302 TADIVVT-------TTGNKDVITIDHMRKMKDMCIVGNI 333
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 44.8 bits (107), Expect = 5e-05
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--AR 268
+KA + + SL G ++V G G V + ++ G ++ D A
Sbjct: 157 GMKA--AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA 214
Query: 269 AVGVELVSFDQALAT 283
G + V+ +
Sbjct: 215 EEGADAVAPNAIYGV 229
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 44.5 bits (106), Expect = 6e-05
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALAT 283
SL G T+ V G G VG +A A G ++ D A A+G V+ + L+T
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST 230
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 43.2 bits (102), Expect = 2e-04
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ +GLG V DP A +A G +V+ + A
Sbjct: 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPIC-ALQAAMEGYRVVTMEYAAD 331
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
AD F++ T + N + M+ + N+
Sbjct: 332 KADIFVT-------ATGNYHVINHDHMKAMRHNAIVCNI 363
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 43.3 bits (103), Expect = 2e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ L G + V G G+VG+ VA A+ LGM V+A
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 42.9 bits (102), Expect = 2e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
+ +G+ + G +A+ GFG VG+ AR G V+A
Sbjct: 227 EKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K + + GKT+A+ G G VG A + +G VIA
Sbjct: 202 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 42.9 bits (102), Expect = 2e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ L + + GFG GS +A+ G VI
Sbjct: 213 KKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG 249
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 42.9 bits (102), Expect = 2e-04
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ + +AV GFG VG+ + + G V A
Sbjct: 204 KRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA 240
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 41.6 bits (98), Expect = 6e-04
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
I ++ + KT V GFG VG R G I
Sbjct: 227 INEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT 272
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 41.3 bits (97), Expect = 9e-04
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDPYAPADKARAVGVELVSFDQALA 282
+ GK + + G+G VG A KGLG V DP A +A G +V+ D+ +
Sbjct: 253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI-CAIQAVMEGFNVVTLDEIVD 311
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
D FI+ T + E KMK + N+
Sbjct: 312 KGDFFIT-------CTGNVDVIKLEHLLKMKNNAVVGNI 343
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 39.6 bits (93), Expect = 0.003
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDPYAPADKARAVGVELVSFDQALATA 284
+ GK +A++G+G G A K G++V A KA A G+++ A+A A
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAA 73
Query: 285 DFISLHMPLNPTT--SKIFNDETFAKMKKGVRIV 316
D + M L P +++ +E +KKG +
Sbjct: 74 DVV---MILTPDEFQGRLYKEEIEPNLKKGATLA 104
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 39.4 bits (93), Expect = 0.003
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARR-AKGLGMNVIA 257
+G+ T+AV GFG VG A ++ LG V+A
Sbjct: 201 DVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 238
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 39.1 bits (92), Expect = 0.004
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K+ +LVGKT+A+ GFG V A++ LG +
Sbjct: 222 KHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 38.3 bits (89), Expect = 0.005
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAVGVELVSFD---QALATA 284
TL G G ++R G +I +P + RA G E + + +L
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP-DQMEAIRASGAEPLLWPGEEPSLDGV 64
Query: 285 DFISLHMP 292
+ +
Sbjct: 65 THLLISTA 72
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 36.9 bits (86), Expect = 0.016
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K + + + +T V G G V ++ L + V+
Sbjct: 244 KSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 36.8 bits (86), Expect = 0.018
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K + +L K V G G V + + G V+
Sbjct: 231 KDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLT 267
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 35.9 bits (84), Expect = 0.040
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 226 SLVGKTLAVMGFGKVGSEVARR-AKGLGMNVIA 257
+L GKT+A+ G+G G +A+ ++ GM V+A
Sbjct: 209 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA 241
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 35.8 bits (83), Expect = 0.044
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Query: 227 LVGKTLAVMGFGKVGSEVARRAKGL-----GMNVI-------AHDPYAPADKARAVGVEL 274
L GK + ++G G G +GL G+++ + A KA G ++
Sbjct: 35 LQGKKVVIVGCGAQG-----LNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV 89
Query: 275 VSFDQALATADFISLHMP 292
++++ + AD + P
Sbjct: 90 GTYEELIPQADLVINLTP 107
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 35.6 bits (83), Expect = 0.050
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHD-----PYAPADKARAVGVELV--SFDQAL 281
K + V+G + G AR LG V +D A G+++V S L
Sbjct: 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLEL 68
Query: 282 ATADF 286
DF
Sbjct: 69 LDEDF 73
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 35.4 bits (82), Expect = 0.053
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDP-YAPADKARAVGVELV-----SFDQALAT 283
+ + ++G G +G + R +V ++ + A A G ++ + +A A
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 284 ADFISLHMPL 293
I L +P+
Sbjct: 69 DALIVLAVPM 78
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 34.6 bits (80), Expect = 0.086
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ G ++V G G V +A G VI
Sbjct: 224 KRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVIT 260
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 34.4 bits (80), Expect = 0.10
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHD--PYAPADKARAVGVELV--SFDQA-LAT 283
GK + ++G G G G+ D P VE S + L
Sbjct: 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMA 64
Query: 284 ADFI 287
AD I
Sbjct: 65 ADLI 68
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 33.4 bits (76), Expect = 0.17
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDP-YAPADKARAVGVELV-SFDQALATADFI 287
+ +GFG+V +A R + G+ V+ +P+ RA V + + ++ + + +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium
smegmatis} PDB: 2we7_A
Length = 386
Score = 32.5 bits (74), Expect = 0.41
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 29/115 (25%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APADKARAVGVELVSFDQALATADFISLH 290
+ V G + VA++ LG V D A AR TAD + +
Sbjct: 207 MLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFATTAR------------FPTADEVVVD 254
Query: 291 MPLNPTTSKIFNDETFAKMKKGVR------IVNVARGGVIDEEALVRALDSGVVA 339
P A + + + D L AL +A
Sbjct: 255 WP----------HRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIA 299
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 32.2 bits (73), Expect = 0.42
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY--------APADKARAVGVELVSFDQA 280
T+A +GFG+ +A G + A+D A +A +GVE +
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 281 LATADFI 287
+A AD +
Sbjct: 85 IACADVV 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.44
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 486 KQ--KGLRISEERVVADSSPEFPID-SIQ 511
KQ K L+ S + DS+P I +++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 1.9
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 9/26 (34%)
Query: 260 PYAPADKARAVGVELVSFDQALATAD 285
YA D A A+ ++ AT +
Sbjct: 31 LYAD-DSAPALAIK--------ATME 47
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 32.2 bits (74), Expect = 0.46
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 230 KTLAVMGFGKVGSEVAR--RAKGLGMNVIAHDPYAPA-DKARAVGV---ELVSFDQALAT 283
KT+ + G G +G+ +A + ++ ++ + D A G+ F A
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAAL 66
Query: 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGV 313
AD I L +P+ T +K+ V
Sbjct: 67 ADVIILAVPIK-KTIDFIKILADLDLKEDV 95
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure
INIT midwest center for structural genomics, MCSG,
unknown funct; 1.90A {Streptococcus pneumoniae} SCOP:
d.58.18.7
Length = 91
Score = 30.0 bits (68), Expect = 0.47
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN------QDSLKEIGK 620
D+ G++ V + E +N+ + +T + M V + ++ + G+
Sbjct: 14 DKSGIVAGVSGKIAELGLNI--DDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQ 71
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 32.1 bits (72), Expect = 0.60
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 20/144 (13%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFIS 288
GK + ++G G V V A + + + LA A ++
Sbjct: 23 GKNVLLLGSGFVAQPVIDTL------------------AANDDINVTVACRTLANAQALA 64
Query: 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTE 348
+ + +D K+ +V + A+ + +
Sbjct: 65 KPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKT--DVVTSSYIS 122
Query: 349 EPPAKDSKLVQHENVTVTPHLGAS 372
+ + +TV +G
Sbjct: 123 PALRELEPEIVKAGITVMNEIGLD 146
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.7 bits (70), Expect = 0.63
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
K AV+G G+ G + + +G V+A D
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVD 36
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 31.4 bits (70), Expect = 0.68
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 5/109 (4%)
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLH 290
+ + G G +G + + G V + A + + V + A A +
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPYPALAALAKQYATQ 80
Query: 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339
+ KI D T + V +E + DS V+
Sbjct: 81 LK-----GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLK 124
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 31.2 bits (70), Expect = 0.72
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISL 289
+ + G G G + + G +V+ G E++ + +A + +D I L
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVL 79
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 31.7 bits (72), Expect = 0.78
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAV--GVELV--------- 275
KT+AV+G G+ G+ + R A +G +V A H + V L
Sbjct: 6 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVP 65
Query: 276 SFDQALATAD 285
D A
Sbjct: 66 LMDTLFEGAH 75
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 31.4 bits (72), Expect = 0.95
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281
L ++G G +G E+A A+ G++V + P +RA L F
Sbjct: 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVET-QPRLMSRAAPATLADFVARY 196
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 31.0 bits (71), Expect = 0.97
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGV--ELVSFDQALATADFIS 288
+ V+G G +G+ +A + G +I +KA + E L TA I
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 289 LHMPLN 294
L P+
Sbjct: 63 LCTPIQ 68
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 31.4 bits (72), Expect = 1.0
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY--APA 264
+ ++G G++G EVA + LG+ VIA D Y APA
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPA 48
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A
{Pseudomonas aeruginosa} PDB: 2xu2_A*
Length = 252
Score = 30.6 bits (70), Expect = 1.2
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 12/66 (18%)
Query: 193 HGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMG-FGKVGSEVARRAKGL 251
HG AL + + A + A + K L +M A
Sbjct: 117 HG-ALYNDLVGDDELLRAVLDA----------CAAYRKGLPLMVLALADNGRELELADEA 165
Query: 252 GMNVIA 257
+ ++
Sbjct: 166 DVPLLF 171
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 30.8 bits (70), Expect = 1.2
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 230 KTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAVGVELVSFD 278
+ + G G +G E+ARR G V + GV+ + D
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSA-----QPMPAGVQTLIAD 49
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 31.0 bits (71), Expect = 1.3
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNV--IAHDPYAPADKARAVGVE--LVSFDQALATA 284
G + V GFG +GS + A +G V A + A ++GV+ Q
Sbjct: 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNE-HKKQDALSMGVKHFYTDPKQCKEEL 235
Query: 285 DFI----SLHMPLNP 295
DFI H L
Sbjct: 236 DFIISTIPTHYDLKD 250
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 31.1 bits (71), Expect = 1.3
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY--APA 264
+ + ++G G++G E+A A+ LG+ V+A D Y APA
Sbjct: 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPA 56
>3on5_A BH1974 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
oxidoreductase; 2.80A {Bacillus halodurans}
Length = 362
Score = 30.5 bits (69), Expect = 1.6
Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 27/110 (24%)
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV---SFDQALATADFI 287
L + G G + A +G + D +K + + L
Sbjct: 202 LIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEKHFFPDADEIIVDFPADFLR----- 256
Query: 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337
+ P ++ + D+E L L+ +
Sbjct: 257 --KFLIRPDDF----------------VLIMTHHFQKDQEILHFLLEKEL 288
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 30.7 bits (70), Expect = 1.7
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP-ADKARAVGVELVSFDQ 279
G T+ V G G VG A A+ LG VI D A+A G E+
Sbjct: 186 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSL 238
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 30.7 bits (70), Expect = 1.8
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 13/74 (17%)
Query: 224 GVSLVGKTLAVMGF---GKVG-------SEVARRAKGLGMNVIAHDPYAPADKARAVGVE 273
G + G +A++G+ G +V+ HDPY +
Sbjct: 348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDN 407
Query: 274 LVSFDQALATADFI 287
L ++ + AD I
Sbjct: 408 L---EEVVRNADAI 418
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 30.6 bits (70), Expect = 1.8
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281
L ++G G +G EVA A+ LG++V + R +G + ++ + L
Sbjct: 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEA-GDELLVRVLGRRIGAWLRGL 194
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization
protein, structural genomics; 1.70A {Pyrococcus
horikoshii} SCOP: c.6.2.5
Length = 255
Score = 30.2 bits (69), Expect = 1.9
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 13/65 (20%)
Query: 193 HGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLG 252
HG AL +M + A A I+ + K L ++ S VA A+ +G
Sbjct: 111 HG-ALYNAMVKEEDLARAVIEG----------ILDFDKDLILVTLS--NSRVADIAEEMG 157
Query: 253 MNVIA 257
+ V
Sbjct: 158 LKVAH 162
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 30.3 bits (69), Expect = 2.0
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281
L V+G G +G EVA A M+V D A R + +F + L
Sbjct: 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDT-AARVLERVTAPPVSAFYEHL 200
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 30.3 bits (69), Expect = 2.0
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP-ADKARAVGVELVSFDQ 279
G + + G G VG A A+ LG VI D G E +
Sbjct: 186 GSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRN 238
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 29.9 bits (67), Expect = 2.1
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALATADFIS 288
+ ++G G +A R G G V+ +P + ++ ++A+++ + I
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNP-KRTARLFPSAAQVTFQEEAVSSPEVIF 88
Query: 289 L 289
+
Sbjct: 89 V 89
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.1 bits (67), Expect = 2.1
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDPYAPADKARAVGVELVSFDQALATADF 286
G +AV+G G VG +A LG V DP A +A + F Q L
Sbjct: 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPH 78
Query: 287 ISLH 290
+ L
Sbjct: 79 VHLA 82
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 30.3 bits (69), Expect = 2.2
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 248 AKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFI 287
+ + V A+DP+ D A+ A +
Sbjct: 345 NQEPDIEVCAYDPHVELDFV------EHDMSHAVKDASLV 378
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 30.2 bits (69), Expect = 2.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281
K + V+G G +G E A A+ G+ V + AP AR V E+ S+
Sbjct: 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVEL-APRVMARVVTPEISSYFHDR 193
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 28.8 bits (65), Expect = 2.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 233 AVMGFGKVGSEVARRAKGLGMNVIAHD 259
V+G G + R G V+A D
Sbjct: 10 IVIGSEAAGVGLVRELTAAGKKVLAVD 36
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics
consortium, structural genomics, protein structure
initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP:
c.6.2.5
Length = 252
Score = 29.4 bits (67), Expect = 2.7
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 13/65 (20%)
Query: 193 HGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLG 252
HG L A+ ADA +A V L ++G GSE+ R K G
Sbjct: 106 HG-MLYNQAAKEAQLADAIARA----------VYACDPALILVGLA--GSELIRAGKQYG 152
Query: 253 MNVIA 257
+
Sbjct: 153 LTTRE 157
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus} SCOP: c.6.2.5
Length = 250
Score = 29.4 bits (67), Expect = 3.1
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 13/65 (20%)
Query: 193 HGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLG 252
HG AL R+ A A A V L ++ G+ A+ G
Sbjct: 111 HG-ALYLKACRDRETARAIALA----------VKAFDPGLPLVVLP--GTVYEEEARKAG 157
Query: 253 MNVIA 257
+ V+
Sbjct: 158 LRVVL 162
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.9 bits (68), Expect = 3.1
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281
K V+G G +G E A G+NV + P AR G L F QA
Sbjct: 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEA-LPRVLARVAGEALSEFYQAE 203
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 29.5 bits (67), Expect = 3.9
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAVGVE--LVS 276
+ G+ G ++G G VG + AK +G +V + + +G + ++
Sbjct: 173 SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIG 232
Query: 277 FDQALATA-----DFI----SLHMPLNP 295
DQA + D++ +H L P
Sbjct: 233 SDQAKMSELADSLDYVIDTVPVHHALEP 260
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 29.5 bits (67), Expect = 4.0
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 566 VDQPGMIGKVGNILGEHNVNV 586
D+PG++ + IL + ++++
Sbjct: 367 FDRPGVLADITRILADSSISI 387
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 29.3 bits (66), Expect = 4.2
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 229 GKTLAVMGFGKVGSEVA----RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281
K++ ++G G +GSE+A R+A+ LG VI P + + + L ++
Sbjct: 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFP-EKGNMGKILPEYLSNWTMEK 235
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 29.0 bits (65), Expect = 4.7
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 22/124 (17%)
Query: 338 VAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKE---AQEGVA-----IEIAEAVV 389
+A+ ++ F E+ + V + GA+ A +A + A A++
Sbjct: 277 IAERMIEAFKEKQRNR-----------VRAYTGANVGLATPALMRIAESTHQVAAARALL 325
Query: 390 GALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQL---VSGGSGIKSVKLIYR 446
+ +N E L+ A K+ AV +G + + R
Sbjct: 326 EKTWEDHRIHGLNHQYPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQR 385
Query: 447 SARD 450
RD
Sbjct: 386 LFRD 389
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase,
structural genomics, PSI-2, protein structure
initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Length = 88
Score = 27.2 bits (61), Expect = 5.1
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ-----DSLKEIGKV 621
D+ GM ++ ++ + + N+ + + + I V + ++ D L+++ V
Sbjct: 14 DKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV-KNTDKLTTLMDKLRKVQGV 72
Query: 622 HFVARI 627
V R+
Sbjct: 73 FTVERL 78
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical;
PFAM04748, structural PSI, protein structure initiative;
2.50A {Bacillus halodurans} SCOP: c.6.2.7
Length = 245
Score = 28.9 bits (64), Expect = 5.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265
T+AVM F + ++ A A+ G+ VI H P P
Sbjct: 31 TVAVMPFLEHSTKQAEIAQAAGLEVIVHMPLEPKK 65
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 28.7 bits (65), Expect = 5.5
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAVGVE--LVS 276
KY G+ GK + ++G G +G + AK G V P + + G + LVS
Sbjct: 180 KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVS 239
Query: 277 FDQALATA-----DFI----SLHMPLNP 295
DQ A D I S PL P
Sbjct: 240 RDQEQMQAAAGTLDGIIDTVSAVHPLLP 267
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 28.5 bits (64), Expect = 5.5
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV 275
+ G+ + E R +G + V+A D K G V
Sbjct: 14 ICGWSESTLECLRELRGSEVFVLAEDE-NVRKKVLRSGANFV 54
>2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis;
HET: ACO; 2.31A {Streptomyces clavuligerus} PDB: 2wpw_A*
Length = 339
Score = 28.2 bits (62), Expect = 7.7
Identities = 33/226 (14%), Positives = 52/226 (23%), Gaps = 31/226 (13%)
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
A +H L + + + G + A MG +
Sbjct: 112 LARKHDRTTLTATVVESLPSGPAQDPGPAAFA------------AAMGAHRSDIPAGTH- 158
Query: 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALA---TADFISLHMPLNPTTSKIFNDET 305
+++ HDP A A G LV++ L + L E
Sbjct: 159 --QWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQEV 216
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTV 365
+ + V RG V + ++ T P V
Sbjct: 217 RTSYARQFETMRVGRGRRAYHTGAVHDATGALAGYTSVSKTTGNPA-----YALQGMTVV 271
Query: 366 TPH-----LGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMV 406
LG K A E + N PM+
Sbjct: 272 HREHRGHALGTLLKLANLEYV---LRHEPEVRLVETANAEDNHPMI 314
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Agrobacterium tumefaciens str}
Length = 261
Score = 28.1 bits (62), Expect = 8.6
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
TL G + A+ G ++ P P
Sbjct: 58 TLGFAASGNSLQRWMQDARREGHEILLQIPLEPFGY 93
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 28.2 bits (63), Expect = 8.8
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 221 KYVGVSLVGKTLAVM----GFGKVGSEVARR-AKGLGMNVIAHDPYAPAD--------KA 267
+Y+ G +A++ FG+ E AR+ A+ LG+ ++ + +
Sbjct: 135 EYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRF 194
Query: 268 RAVGVELV 275
GVE V
Sbjct: 195 EQAGVEYV 202
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: AMP; 1.94A {Bifidobacterium
adolescentis} PDB: 3e0f_A*
Length = 301
Score = 28.0 bits (63), Expect = 8.9
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 242 SEVARRAKGLGMNVIA---HD---PYAPA-DKARAVGVELVS 276
+ +A+ LG++ +A HD + A + + +G+ L+
Sbjct: 31 RTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLL 72
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB:
2yb4_A
Length = 292
Score = 28.0 bits (63), Expect = 9.8
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 242 SEVARRAKGLGMNVIA---HD---PYAPA-DKARAVGVELVS 276
+EV RA ++A HD A A A G+ ++
Sbjct: 20 TEVIDRAAARAPALLALTDHDCTGGLAEAAAAAARRGIPFLN 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.358
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,247,402
Number of extensions: 606873
Number of successful extensions: 1661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1526
Number of HSP's successfully gapped: 159
Length of query: 628
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 529
Effective length of database: 3,937,614
Effective search space: 2082997806
Effective search space used: 2082997806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)