BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006865
(628 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E0W|A Chain A, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
pdb|2E0W|B Chain B, T391a Precursor Mutant Protein Of
Gamma-Glutamyltranspeptidase From Escherichia Coli
Length = 556
Score = 291 bits (746), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 272/508 (53%), Gaps = 13/508 (2%)
Query: 71 VESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRS 130
V ++QG+VA+ D +++G +L++GG+AVDAAVA L V +P A +GGG FM++RS
Sbjct: 20 VRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRS 79
Query: 131 SATSQTQAFDMRETAPLAASQDMYENNPG-----ANYAGALSMGVPGEIAGLHEAWLKHG 185
T A D RE AP A++DM+ ++ G + L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 186 RLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRIL-NDRGLQEVFAPNGKLLKPGDKC 244
+ + QPA KLA++GF+V L + G +L N + +F G+ LK GD
Sbjct: 139 TMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 245 YNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXX 304
LA+SLE +AE GP Y GT+ E + +++ K GG++T EDL
Sbjct: 199 VQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 305 MGYTISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRII-EALKHMFAARMN-LG 362
GY + MPPPS G + +LNIL+++ G+ +I+ EA K+ +A R LG
Sbjct: 259 RGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLG 318
Query: 363 DPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP-PDYYMNRWSQLRDHGTSHFCIVDAE 421
DP+FV + + + ++AK I +I N P + + + + +H+ +VD +
Sbjct: 319 DPDFVKVP--WQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYESNQATHYSVVDKD 376
Query: 422 RNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDM-LPPTPANFIKPNKRP 480
NAV++T T+N FG GI++ +GI+LNN+M DFS P L AN + PNKRP
Sbjct: 377 GNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRP 436
Query: 481 LSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQNPRVYHKVIP 540
LSSM+P I+ KD + V G GG II V+Q+ +N +G+ A PR +H+ +P
Sbjct: 437 LSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNAPRFHHQWLP 496
Query: 541 NVVMYENWTVIDGDHIELADETKLFLEE 568
+ + E D + A K+ L+E
Sbjct: 497 DELRVEKGFSPDTLKLLEAKGQKVALKE 524
>pdb|2Z8I|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8J|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|A Chain A, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|C Chain C, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 366
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/334 (35%), Positives = 179/334 (53%), Gaps = 11/334 (3%)
Query: 71 VESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRS 130
V ++QG+VA+ D +++G +L++GG+AVDAAVA L V +P A +GGG FM++RS
Sbjct: 20 VRAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRS 79
Query: 131 SATSQTQAFDMRETAPLAASQDMYENNPG-----ANYAGALSMGVPGEIAGLHEAWLKHG 185
T A D RE AP A++DM+ ++ G + L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 186 RLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRIL-NDRGLQEVFAPNGKLLKPGDKC 244
+ + QPA KLA++GF+V L + G +L N + +F G+ LK GD
Sbjct: 139 TMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 245 YNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXX 304
LA+SLE +AE GP Y GT+ E + +++ K GG++T EDL
Sbjct: 199 VQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 305 MGYTISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRII-EALKHMFAARMN-LG 362
GY + MPPPS G + +LNIL+++ G+ +I+ EA K+ +A R LG
Sbjct: 259 RGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADRSEYLG 318
Query: 363 DPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
DP+FV + + + ++AK I +I N P
Sbjct: 319 DPDFVKVP--WQALTNKAYAKSIADQIDINKAKP 350
>pdb|2DBU|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBW|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBX|A Chain A, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|C Chain C, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|A Chain A, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|C Chain C, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|A Chain A, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|C Chain C, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|A Chain A, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|C Chain C, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
Length = 366
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 11/334 (3%)
Query: 71 VESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRS 130
V ++QG VA+ D +++G +L++GG+AVDAAVA L V +P A +GGG F ++RS
Sbjct: 20 VRAKQGXVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFXLIRS 79
Query: 131 SATSQTQAFDMRETAPLAASQDMY---ENNPGANYA--GALSMGVPGEIAGLHEAWLKHG 185
T A D RE AP A++D + + NP + + L+ G PG +AG A K+G
Sbjct: 80 K-NGNTTAIDFREXAPAKATRDXFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYG 138
Query: 186 RLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRIL-NDRGLQEVFAPNGKLLKPGDKC 244
+ QPA KLA++GF+V L + G +L N + +F G+ LK GD
Sbjct: 139 TXPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDTL 198
Query: 245 YNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXX 304
LA+SLE +AE GP Y GT+ E + ++ K GG++T EDL
Sbjct: 199 VQANLAKSLEXIAENGPDEFYKGTIAEQIAQEXQKNGGLITKEDLAAYKAVERTPISGDY 258
Query: 305 MGYTISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRI-IEALKHMFAARMN-LG 362
GY + PPPS G + +LNIL+++ G+ +I EA K+ +A R LG
Sbjct: 259 RGYQVYSXPPPSSGGIHIVQILNILENFDXKKYGFGSADAXQIXAEAEKYAYADRSEYLG 318
Query: 363 DPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
DP+FV + + + ++AK I +I N P
Sbjct: 319 DPDFVKVP--WQALTNKAYAKSIADQIDINKAKP 350
>pdb|3A75|A Chain A, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|C Chain C, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 384
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 166/324 (51%), Gaps = 11/324 (3%)
Query: 74 EQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRSSAT 133
+ G+VA SEIGA +L++GG+A+DAAVA L V PM SGIGGG FM+V T
Sbjct: 27 KDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKT 86
Query: 134 SQTQAFDMRETAPLAASQDMY--ENNPGANYAGALS----MGVPGEIAGLHEAWLKHGRL 187
T D RE AP A+ DM+ EN ++ ++ +GVPG + GL EA K G
Sbjct: 87 KDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTR 146
Query: 188 AWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKLLKPGDKCYNE 247
+ + L P+IKLA++GF + L I+ + L+ ++VF PNG+ LK GD +
Sbjct: 147 SMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLKEGDTLIQK 205
Query: 248 KLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXXMGY 307
LA++ + + +G A Y G + L V GG +T +DL GY
Sbjct: 206 DLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGY 265
Query: 308 TISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRIIEALKHM-FAARMNL-GDPN 365
I+ PPPS G + +L ILD + S + ++++ H+ +A R + GDP
Sbjct: 266 QIATTPPPSSGGIFLLQMLKILDHFNLSQYDVRSWEKYQLLAETMHLSYADRASYAGDPE 325
Query: 366 FVNISSVLSEMLSLSFAKQIQQKI 389
FVN+ L +L + K+ QQ I
Sbjct: 326 FVNVP--LKGLLHPDYIKERQQLI 347
>pdb|2V36|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 376
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 165/324 (50%), Gaps = 11/324 (3%)
Query: 74 EQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRSSAT 133
+ G+VA SEIGA +L++GG+A+DAAVA L V PM SGIGGG FM+V T
Sbjct: 19 KDGMVATAHPLASEIGADVLKKGGNAIDAAVAIQFALNVTEPMMSGIGGGGFMMVYDGKT 78
Query: 134 SQTQAFDMRETAPLAASQDMY--ENNPGANYAGALS----MGVPGEIAGLHEAWLKHGRL 187
T D RE AP A+ DM+ EN ++ ++ +GVPG + GL EA K G
Sbjct: 79 KDTTIIDSRERAPAGATPDMFLDENGKAIPFSERVTKGTAVGVPGTLKGLEEALDKWGTR 138
Query: 188 AWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKLLKPGDKCYNE 247
+ + L P+IKLA++GF + L I+ + L+ ++VF PNG+ LK GD +
Sbjct: 139 SMKQLITPSIKLAEKGFPIDSVLAEAISDYQEK-LSRTAAKDVFLPNGEPLKEGDTLIQK 197
Query: 248 KLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXXMGY 307
LA++ + + +G A Y G + L V GG +T +DL GY
Sbjct: 198 DLAKTFKLIRSKGTDAFYKGKFAKTLSDTVQDFGGSMTEKDLENYDITIDEPIWGDYQGY 257
Query: 308 TISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRIIEALKHM-FAARMNL-GDPN 365
I+ PPPS G + + ILD + S + ++++ H+ +A R + GDP
Sbjct: 258 QIATTPPPSSGGIFLLQMPKILDHFNLSQYDVRSWEKYQLLAETMHLSYADRASYAGDPE 317
Query: 366 FVNISSVLSEMLSLSFAKQIQQKI 389
FVN+ L +L + K+ QQ I
Sbjct: 318 FVNVP--LKGLLHPDYIKERQQLI 339
>pdb|2QM6|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QMC|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|3FNM|A Chain A, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|C Chain C, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 377
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 177/348 (50%), Gaps = 29/348 (8%)
Query: 65 ASGADIVESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGS 124
AS I ++ G+ + SEIG +L +GG+A+DAAVA L VV+P A IGGG
Sbjct: 25 ASYPPIKNTKVGLALSSHPLASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGG 84
Query: 125 FMIVRSSATSQTQAFDMRETAPLAASQDMYENN-----PGANYAGALSMGVPGEIAGLHE 179
F ++ A + A D RE APL A+++M+ + P + G L+ GVPG +AG+
Sbjct: 85 FAVIH-LANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEA 143
Query: 180 AWLKHGRLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKL-L 238
K+G L PAIKLA+ G+ ++ + ++ R L ++ F G L
Sbjct: 144 MLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDY 203
Query: 239 KPGDKCYNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXX 298
+ GD + LA++L + G + Y G V E++ KD+ K GGI+T EDL
Sbjct: 204 QEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRK 263
Query: 299 XXXXXXMGYTISGMPPPSCGTAGMAMVLNILDS-------YGSSDSAKGNLGLHRIIEAL 351
GY I M PPS G + +LN++++ YG+S + +H EA+
Sbjct: 264 PVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKN------IHIAAEAM 317
Query: 352 KHMFAAR-MNLGDPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFPPD 398
+ +A R + +GD +FV++ + ++++ ++AK KIFD T PD
Sbjct: 318 RQAYADRSVYMGDADFVSVP--VDKLINKAYAK----KIFD--TIQPD 357
>pdb|2NQO|A Chain A, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|C Chain C, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
Length = 376
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 176/346 (50%), Gaps = 23/346 (6%)
Query: 65 ASGADIVESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGS 124
AS I ++ G+ + SEIG +L +GG+A+DAAVA L VV+P A IGGG
Sbjct: 24 ASYPPIKNTKVGLALSSHPLASEIGQKVLEEGGNAIDAAVAIGFALAVVHPAAGNIGGGG 83
Query: 125 FMIVRSSATSQTQAFDMRETAPLAASQDMYENN-----PGANYAGALSMGVPGEIAGLHE 179
F ++ A + A D RE APL A+++M+ + P + G L+ GVPG +AG+
Sbjct: 84 FAVIH-LANGENVALDFREKAPLKATKNMFLDKQGNVVPKLSEDGYLAAGVPGTVAGMEA 142
Query: 180 AWLKHGRLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKL-L 238
K+G L PAIKLA+ G+ ++ + ++ R L ++ F G L
Sbjct: 143 MLKKYGTKKLSQLIDPAIKLAENGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDY 202
Query: 239 KPGDKCYNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXX 298
+ GD + LA++L + G + Y G V E++ KD+ K GGI+T EDL
Sbjct: 203 QEGDLFVQKDLAKTLNQIKTLGAKGFYQGQVAELIEKDMKKNGGIITKEDLASYNVKWRK 262
Query: 299 XXXXXXMGYTISGMPPPSCGTAGMAMVLNILDS-------YGSSDSAKGNLGLHRIIEAL 351
GY I M PPS G + +LN++++ YG+S + +H EA+
Sbjct: 263 PVVGSYRGYKIISMSPPSSGGTHLIQILNVMENADLSALGYGASKN------IHIAAEAM 316
Query: 352 KHMFAAR-MNLGDPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFP 396
+ +A R + +GD +FV++ + ++++ ++AK+I I +T P
Sbjct: 317 RQAYADRSVYMGDADFVSVP--VDKLINKAYAKKIFDTIQPDTVTP 360
>pdb|2NLZ|A Chain A, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|B Chain B, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|C Chain C, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
pdb|2NLZ|D Chain D, Crystal Structure Of Cephalosporin Acylase From Bacillus
Halodurans
Length = 547
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 217/477 (45%), Gaps = 35/477 (7%)
Query: 69 DIVESEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIV 128
++V ++ G+VA ++ G +L+ GG+A+DAA+ATA L V+ P ++GIG +F +V
Sbjct: 17 NVVYAKNGMVATSQPLAAQAGLDILKAGGNAIDAAIATATALTVLEPTSNGIGSDAFALV 76
Query: 129 RSSATSQTQAFDMRETAPLAASQDM-----YENNPGANYAGALSMGVPGEIAGLHEAWLK 183
+ + + AP++ + + YE G + + VPG E
Sbjct: 77 WTKG--KLHGLNGSGRAPMSLTMEAVKAKGYEQE--LPPYGVIPVTVPGAPGAWAELAKM 132
Query: 184 HGRLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRI---LNDRGLQ---EVFAPNGKL 237
+G L PAI+ A+EG+ V P L ++ + R+ D Q + FAP G+
Sbjct: 133 YGNLPLAASLAPAIRYAEEGYPVTPTLAKYWKAAYDRVKTEWTDDVYQPWFDTFAPKGRA 192
Query: 238 LKPGDKCYNEKLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXX 297
+ G+ ++ A +L ++AE ++ Y G + + + K GG LT EDL
Sbjct: 193 PRVGEVWRSQGHADTLRSIAESNGESFYRGELADQIHAFFDKHGGYLTKEDLACYRPEWV 252
Query: 298 XXXXXXXMGYTISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRIIEALKHMFAA 357
GY + +PP G + LNI+ + + H+ IEA+K F
Sbjct: 253 EPISIDYRGYRVWEIPPNGQGLVALE-ALNIVKGFEFYHKDTVDT-YHKQIEAMKLAFVD 310
Query: 358 RMN-LGDPNFVNISSVLSEMLSLSFAKQIQQKIFDNTTFPPDYYMNRWSQLRDHGTSHFC 416
M + +P+ +++S + ++LS +A + +++I + P R GT +
Sbjct: 311 GMKYVTEPSDMSVS--VEQLLSDEYATERRKEIGEQALTPEPGTPPR------GGTVYLA 362
Query: 417 IVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDMLPPTPANFIKP 476
D + N VS + FG+G++ P TGI + N +FS L P N +KP
Sbjct: 363 TADGDGNMVSFIQSNYMGFGSGVVVPGTGIAMQNRGHNFS---------LDPNHDNALKP 413
Query: 477 NKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQNPR 533
KR ++ P +TK++Q G G GG +QV +N FG+ AA+ PR
Sbjct: 414 GKRTYHTIIPGFLTKNDQPIGPFGVMGGFMQPQGHMQVMMNTIDFGLNPQAALDAPR 470
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 129/561 (22%), Positives = 223/561 (39%), Gaps = 70/561 (12%)
Query: 73 SEQGVVAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRSSA 132
S++ V+A+ S G +L++GG+ DAA+A + L V G+GG F ++R
Sbjct: 10 SQRSVIASSSELASLAGRDILKRGGNIFDAALAVSAXLCVTQNNLCGLGGDLFALIRDE- 68
Query: 133 TSQTQAFDMRETAPLAASQDMYENN-----PGANYAGALSMGVPGEIAGLHEAWLKHGRL 187
Q + A A S D YE+ P A++ VPG E + K
Sbjct: 69 NGQIXDLNGSGQASRAVSIDYYESXGLTKIPERGPYAAIT--VPGIAGSWDEIFRKFATX 126
Query: 188 AWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKLLKPGDKCYNE 247
+ +PAI+ A GF + IA+S I RG +F PNG + G+
Sbjct: 127 DIADILEPAIRTASAGFPITQNYSDSIARSAPVIGQYRGWSSIFXPNGSVPVAGEILKQP 186
Query: 248 KLAQSLEAVAEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXXMGY 307
LA+S +E+G ++ Y+G++ ++++ + G L+ DLR +
Sbjct: 187 DLAESFRLXSEEGFRSFYDGSLADIIIAGLEGTGSPLSDRDLRVYRPLIGKPVFTDLDEF 246
Query: 308 TISGMPPPSCGTAGMAMVLNILDSYGSSDSAKGNLGLHRIIEALKHMFAARMNLGDPNFV 367
I P S G + + +S+G + I E + + R + DP++
Sbjct: 247 RIYETSPNSQGITVIEWIRG-XESHGYDSRTXWEAKIEDIFETXEEAYDKRRKITDPSYX 305
Query: 368 NISSVLSEMLSLSFAKQIQQKIFDNTTFPPDYYMNRWSQLRDHG----TSHFCIVDAERN 423
NI ++ S + K K RDH T++F I D+E
Sbjct: 306 NI----AQHDSANGKKDGLPK-------------------RDHNDIGDTTYFSISDSEGR 342
Query: 424 AVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDMLPPTPANFIKPNKRPLSS 483
+VS+ + FG+GI+ TG VL N F++ ++P N + P KR +
Sbjct: 343 SVSIIQSNYXGFGSGIVPKGTGFVLQNRGSYFTLQRDHP---------NALXPGKRTFHT 393
Query: 484 MTPLIITKDNQLAGVIGGSGGLHIIPAV-IQVFLNHFIFGIESLAAVQNPRVYHKVIPNV 542
+ + K++ L +G GG I P V Q+ + A + PR
Sbjct: 394 LAACXVEKEHDLYASLGSXGG-DIQPQVQXQILXEILKDNTDPQAILDKPR--------- 443
Query: 543 VMYENWTVIDGDHIELADETKLFLEERRHQLEGRAGGAIVQLIVQTLGNPINEAQKLRKY 602
E +T+ + + +L+ + Q+ GR +++++ + AQ
Sbjct: 444 -WTEPYTIYEAPGAVYVESEELYRNVSK-QISGR------KVVLRDVSQEFGTAQITTLI 495
Query: 603 MGNAQVLHGILTAVSDPRKDG 623
G+ ++ +DPR DG
Sbjct: 496 RGD------VVVGAADPRGDG 510
>pdb|2V36|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
pdb|2V36|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase From
Bacillus Subtilis
Length = 193
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Query: 412 TSHFCIVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDMLPPTPA 471
T+HF + D N VS TTT+ FG GI+ P G++LNNE+ DF D +P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDF--------DAIPGG-A 51
Query: 472 NFIKPNKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQN 531
N ++PNKRPLSSMTP I+ KD++ +G GG II +V+Q L H +G+E AAV+
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEE 111
Query: 532 PRVY 535
PR+Y
Sbjct: 112 PRIY 115
>pdb|3A75|B Chain B, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
pdb|3A75|D Chain D, Crystal Structure Of Glutamate Complex Of Halotolerant
γ-Glutamyltranspeptidase From Bacillus Subtilis
Length = 185
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 9/124 (7%)
Query: 412 TSHFCIVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDMLPPTPA 471
T+HF + D N VS TTT+ FG GI+ P G++LNNE+ DF D +P A
Sbjct: 1 TTHFTVADRWGNVVSYTTTIEQLFGTGIMVPDYGVILNNELTDF--------DAIPGG-A 51
Query: 472 NFIKPNKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQN 531
N ++PNKRPLSSMTP I+ KD++ +G GG II +V+Q L H +G+E AAV+
Sbjct: 52 NEVQPNKRPLSSMTPTILFKDDKPVLTVGSPGGATIISSVLQTILYHIEYGMELKAAVEE 111
Query: 532 PRVY 535
PR+Y
Sbjct: 112 PRIY 115
>pdb|2Z8I|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8I|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
pdb|2Z8J|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
pdb|2Z8K|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
pdb|2Z8K|D Chain D, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Acivicin
Length = 190
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 412 TSHFCIVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDM-LPPTP 470
T+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+M DFS P L
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGD 60
Query: 471 ANFIKPNKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQ 530
AN + PNKRPLSSM+P I+ KD + V G GG II V+Q+ +N +G+ A
Sbjct: 61 ANAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATN 120
Query: 531 NPRVYHKVIPNVVMYENWTVIDGDHIELADETKLFLEE 568
PR +H+ +P+ + E D + A K+ L+E
Sbjct: 121 APRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKE 158
>pdb|2Z8J|B Chain B, Crystal Structure Of Escherichia Coli
Gamma-Glutamyltranspeptidase In Complex With Azaserine
Prepared In The Dark
Length = 190
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 413 SHFCIVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDM-LPPTPA 471
+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+M DFS P L A
Sbjct: 2 THYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDA 61
Query: 472 NFIKPNKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQN 531
N + PNKRPLSSM+P I+ KD + V G GG II V+Q+ +N +G+ A
Sbjct: 62 NAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGLNVAEATNA 121
Query: 532 PRVYHKVIPNVVMYENWTVIDGDHIELADETKLFLEE 568
PR +H+ +P+ + E D + A K+ L+E
Sbjct: 122 PRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKE 158
>pdb|2DBU|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBU|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli
pdb|2DBX|B Chain B, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DBX|D Chain D, Crystal Structure Of Gamma-glutamyltranspeptidase From
Escherichia Coli Complexed With L-glutamate
pdb|2DG5|B Chain B, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2DG5|D Chain D, Crystal Structure Of Gamma-Glutamyl Transpeptidase From
Escherichia Coli In Complex With Hydrolyzed Glutathione
pdb|2E0X|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0X|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli (Monoclinic Form)
pdb|2E0Y|B Chain B, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2E0Y|D Chain D, Crystal Structure Of The Samarium Derivative Of Mature
Gamma- Glutamyltranspeptidase From Escherichia Coli
pdb|2DBW|B Chain B, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
pdb|2DBW|D Chain D, Crystal Structure Of Gamma-Glutamyltranspeptidase From
Escherichia Coli Acyl-Enzyme Intermediate
Length = 190
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Query: 412 TSHFCIVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDM-LPPTP 470
T+H+ +VD + NAV++T T+N FG GI++ +GI+LNN+ DFS P L
Sbjct: 1 TTHYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQXDDFSAKPGVPNVYGLVGGD 60
Query: 471 ANFIKPNKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQ 530
AN + PNKRPLSS +P I+ KD + V G GG II V+Q +N +G+ A
Sbjct: 61 ANAVGPNKRPLSSXSPTIVVKDGKTWLVTGSPGGSRIITTVLQXVVNSIDYGLNVAEATN 120
Query: 531 NPRVYHKVIPNVVMYE 546
PR +H+ +P+ + E
Sbjct: 121 APRFHHQWLPDELRVE 136
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 28/295 (9%)
Query: 78 VAADDGRCSEIGASMLRQGGHAVDAAVATALCLGVVNPMASGIGGGSFMIVRSSATSQTQ 137
V+A E G +L+ GG AVDAA+ + LGVV ASGIGGG ++ S +
Sbjct: 23 VSASHPLAVEEGXKVLKNGGSAVDAAIVVSYVLGVVELHASGIGGGGGXLIISK--DKET 80
Query: 138 AFDMRETAP-LAASQDMYENNPGANYAGALSMGVPGEIAGLHEAWLKHGRLAWRTLFQPA 196
D RET P +Q + +GVPG +AG +G L L QPA
Sbjct: 81 FIDYRETTPYFTGNQKPH-------------IGVPGFVAGXEYIHDNYGSLPXGELLQPA 127
Query: 197 IKLAKEGFVVAPYLGRHIAKSGGRILNDRGLQEVFAPNGKLLKPGDKCYNEKLAQSLEAV 256
I A++GF V L + + RI +D+ +F PNG+ ++ G+ LA++L+ +
Sbjct: 128 INYAEKGFKVDDSLTXRLDLAKPRIYSDK--LSIFYPNGEPIETGETLIQTDLARTLKKI 185
Query: 257 AEQGPQALYNGTVGEMLVKDVSKAGGILTMEDLRXXXXXXXXXXXXXXMGYTISGMPPPS 316
++G + Y G V + K +++ED++ GY + PPP
Sbjct: 186 QKEGAKGFYEGGVARAISKTAK-----ISLEDIKGYKVEVRKPVKGNYXGYDVYTAPPPF 240
Query: 317 CGTAGMAMVLNILDS---YGSSDSAKGNLGLHRIIEALKHMFAARMNLGDPNFVN 368
G + L + + Y D I + + + NLGDPN+VN
Sbjct: 241 SGVT-LLQXLKLAEKKEVYKDVDHTATYXSKXEEISRIAYQ-DRKKNLGDPNYVN 293
>pdb|2NQO|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2NQO|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase
pdb|2QM6|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|2QM6|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase In Complex With Glutamate
pdb|3FNM|B Chain B, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
pdb|3FNM|D Chain D, Crystal Structure Of Acivicin-Inhibited
Gamma-Glutamyltranspeptidase Reveals Critical Roles For
Its C-Terminus In Autoprocessing And Catalysis
Length = 188
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Query: 412 TSHFCIVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDM-LPPTP 470
T+H+ + D NAVS+T T+N +G+ G +LNNEM DFSI NP L
Sbjct: 1 TTHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGD 60
Query: 471 ANFIKPNKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQ 530
AN I+ NKRPLSSM+P I+ K+N++ V+G GG II V+QV N + + AV
Sbjct: 61 ANAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVS 120
Query: 531 NPRVYHKVIPNVVMYENW 548
PR + + +P+ + E +
Sbjct: 121 APRFHMQWLPDELRIEKF 138
>pdb|2QMC|B Chain B, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
pdb|2QMC|D Chain D, Crystal Structure Of Helicobacter Pylori
Gamma-Glutamyltranspeptidase T380a Mutant
Length = 188
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 78/137 (56%), Gaps = 1/137 (0%)
Query: 413 SHFCIVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDM-LPPTPA 471
+H+ + D NAVS+T T+N +G+ G +LNNEM DFSI NP L A
Sbjct: 2 THYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNEMDDFSIKPGNPNLYGLVGGDA 61
Query: 472 NFIKPNKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQN 531
N I+ NKRPLSSM+P I+ K+N++ V+G GG II V+QV N + + AV
Sbjct: 62 NAIEANKRPLSSMSPTIVLKNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVSA 121
Query: 532 PRVYHKVIPNVVMYENW 548
PR + + +P+ + E +
Sbjct: 122 PRFHMQWLPDELRIEKF 138
>pdb|3G9K|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|F Chain F, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|S Chain S, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 177
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 412 TSHFCIVDAERNAVSMTTTVNYPFGAGILSPSTGIVLNNEMGDFSIPTENPPDMLPPTPA 471
T+HF I+D + VS T T++ FG G + G LNN++ +F
Sbjct: 1 TTHFVIIDRDGTVVSSTNTLSNFFGTG--KYTAGFFLNNQLQNFG-----------SEGF 47
Query: 472 NFIKPNKRPLSSMTPLIITKDNQLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQN 531
N +P KR + P ++ KD + G+ GS G + IP ++ L+ + G SL + N
Sbjct: 48 NSYEPGKRSRTFXAPTVLKKDGETIGI--GSPGGNRIPQILTPILDKYTHGKGSLQDIIN 105
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 526 LAAVQNPRVYHKVIPNVVMYENWTVIDGDHIELADETKLFLEERRHQLEGRAGGAIVQLI 585
L A+ N R++H PN + +T++D D E E RRH + + G + +
Sbjct: 333 LPAMNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKE-----EYRRHNIRNFSAGGVFE-- 385
Query: 586 VQTLGNPINEAQK-LRKYMGNAQVLH 610
Q G E QK LR Y +Q L+
Sbjct: 386 -QDDGENWVEIQKGLRGYKAKSQPLN 410
>pdb|4DQ8|A Chain A, Crystal Structure Of Acetate Kinase Acka From
Mycobacterium Marinum
pdb|4DQ8|B Chain B, Crystal Structure Of Acetate Kinase Acka From
Mycobacterium Marinum
Length = 391
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 505 LHIIPAVIQVFLNHFIFGIESLAAVQNPRVYHKVIPNVVMYENWTVIDGDHIELADETKL 564
LH PAV+ + + + AV + +H++ P Y ID ELAD K+
Sbjct: 115 LHNPPAVLCIRVARALLPDVPHIAVFDTAFFHQLPPAAATY----AIDR---ELADVWKI 167
Query: 565 FLEERRHQLEGRAGGAIVQLIVQTLGNPINEAQKLRKYMGN 605
RR+ G + + Q + LG PI + ++ ++GN
Sbjct: 168 ----RRYGFHGTSHEYVSQQAAEFLGKPIGDLNQIVLHLGN 204
>pdb|3FA5|A Chain A, Crystal Structure Of A Duf849 Family Protein (Pden_3495)
From Paracoccus Denitrificans Pd1222 At 1.90 A
Resolution
pdb|3FA5|B Chain B, Crystal Structure Of A Duf849 Family Protein (Pden_3495)
From Paracoccus Denitrificans Pd1222 At 1.90 A
Resolution
Length = 282
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 452 MGDFSIPT---ENPPDMLPPTPANFIKPNKRP---LSSMTPLIITK----DNQLAG---V 498
+G + PT ENPPD++ A +K + +P ++ ++ K D +LAG V
Sbjct: 114 VGSNNFPTRVYENPPDLVDWLAAEXLKYDIKPEIEAFDLSHILQAKRXAGDGRLAGTPYV 173
Query: 499 IGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQNPRVYHKVIPNVVMYENWTVIDGDHIEL 558
G + PA VF +++I + L P + P+ ++ W + G H
Sbjct: 174 QFVXGVRNAXPADRDVF-DYYIHTVRRLFGEDAPWCAAGIGPSQIVLNEWAISSGGHART 232
Query: 559 ADETKLFLEERR-----HQLEGRAGGAIVQLIVQTLGNPINEAQKLRKYMG 604
E + L+ R L GRA V+L + P+ ++ R+ +G
Sbjct: 233 GLEDNVRLDRDRLAPSNAALVGRA----VEL-CEKYERPVATWRQARQILG 278
>pdb|3V4C|A Chain A, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3V4C|B Chain B, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 528
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 186 RLAWRTLFQPAIKLAKEGFVVAPYLGRHIAKSGGRILNDRGL-QEVFAPNGKLLKPGDKC 244
R A R +P + G +P L +G + L D L +EVF P G +++ G
Sbjct: 371 RFATRNAVKPLLATESSGRDASPNL---FETTGAQFLADHALGEEVFGPLGLVVRVGSPA 427
Query: 245 YNEKLAQSLE 254
E+LA+ +
Sbjct: 428 EXEELARGFQ 437
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 494 QLAGVIGGSGGLHIIPAVIQVFLNHFIFGIESLAAVQNPRVYHKVIPNVVMYE-NWTV 550
Q++ + GG+G ++IP + V N F F ES A RV+ + + V Y+ W+
Sbjct: 236 QISNINGGTGATNVIPGELNVKFN-FRFSTESTEAGLKQRVHAILDKHGVQYDLQWSC 292
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,829,801
Number of Sequences: 62578
Number of extensions: 765676
Number of successful extensions: 1677
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1611
Number of HSP's gapped (non-prelim): 30
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)