Query 006868
Match_columns 628
No_of_seqs 312 out of 3156
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 15:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 3E-119 6E-124 927.6 49.3 571 7-627 1-574 (574)
2 PRK10953 cysJ sulfite reductas 100.0 5E-105 1E-109 892.0 64.1 536 5-627 60-600 (600)
3 TIGR01931 cysJ sulfite reducta 100.0 1E-102 2E-107 878.8 63.7 535 6-627 58-597 (597)
4 COG0369 CysJ Sulfite reductase 100.0 2E-100 3E-105 842.6 52.8 537 6-627 47-587 (587)
5 KOG1158 NADP/FAD dependent oxi 100.0 7E-100 2E-104 834.1 48.3 587 5-627 45-645 (645)
6 cd06204 CYPOR NADPH cytochrome 100.0 1E-77 2.2E-82 651.1 46.7 383 230-627 5-416 (416)
7 cd06203 methionine_synthase_re 100.0 2.9E-77 6.3E-82 644.4 44.5 375 234-627 2-398 (398)
8 cd06207 CyPoR_like NADPH cytoc 100.0 7.3E-77 1.6E-81 639.3 45.1 377 234-627 2-382 (382)
9 cd06202 Nitric_oxide_synthase 100.0 1.5E-76 3.3E-81 640.0 46.3 384 233-628 1-403 (406)
10 cd06206 bifunctional_CYPOR The 100.0 1.7E-74 3.7E-79 621.3 44.6 373 233-627 1-384 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 3.4E-71 7.4E-76 590.0 42.2 354 233-627 1-360 (360)
12 PRK06214 sulfite reductase; Pr 100.0 1.1E-70 2.4E-75 603.1 42.1 360 228-627 166-530 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 4.5E-46 9.8E-51 370.4 21.0 212 229-445 7-219 (219)
14 PLN03115 ferredoxin--NADP(+) r 100.0 4.2E-41 9.1E-46 355.4 28.7 269 225-627 85-367 (367)
15 cd06182 CYPOR_like NADPH cytoc 100.0 1.1E-38 2.3E-43 326.8 31.8 215 404-627 47-267 (267)
16 cd06201 SiR_like2 Cytochrome p 100.0 2.8E-35 6.2E-40 305.1 30.5 188 405-627 100-289 (289)
17 cd06208 CYPOR_like_FNR These f 100.0 4E-35 8.7E-40 303.9 31.5 210 404-627 63-286 (286)
18 TIGR03224 benzo_boxA benzoyl-C 100.0 5.2E-35 1.1E-39 316.1 31.9 267 225-627 137-411 (411)
19 cd06200 SiR_like1 Cytochrome p 100.0 3.5E-35 7.6E-40 297.5 20.5 210 390-627 32-245 (245)
20 PLN03116 ferredoxin--NADP+ red 100.0 6.9E-35 1.5E-39 304.8 22.4 224 391-627 58-307 (307)
21 PRK09004 FMN-binding protein M 100.0 5.4E-33 1.2E-37 258.2 17.6 146 6-156 1-146 (146)
22 PRK08105 flavodoxin; Provision 100.0 1.2E-32 2.6E-37 256.8 18.0 147 6-156 1-147 (149)
23 PRK05723 flavodoxin; Provision 100.0 4.1E-32 8.8E-37 253.1 16.6 147 7-157 1-150 (151)
24 PRK07308 flavodoxin; Validated 99.9 8E-27 1.7E-31 217.6 16.7 144 6-154 1-144 (146)
25 cd06189 flavin_oxioreductase N 99.9 2.3E-26 5E-31 230.1 13.3 180 390-596 26-211 (224)
26 PF00258 Flavodoxin_1: Flavodo 99.9 8.1E-27 1.8E-31 216.7 8.9 138 11-148 1-143 (143)
27 cd00322 FNR_like Ferredoxin re 99.9 3.7E-26 8E-31 227.8 13.1 185 390-596 23-212 (223)
28 PRK10926 ferredoxin-NADP reduc 99.9 2.4E-26 5.2E-31 233.4 11.5 185 390-597 31-228 (248)
29 cd06188 NADH_quinone_reductase 99.9 7.2E-26 1.6E-30 234.5 14.7 179 405-597 86-271 (283)
30 cd06211 phenol_2-monooxygenase 99.9 6.8E-26 1.5E-30 228.8 14.0 181 390-596 36-225 (238)
31 PRK08051 fre FMN reductase; Va 99.9 6.4E-26 1.4E-30 228.1 12.1 180 390-596 30-216 (232)
32 cd06190 T4MO_e_transfer_like T 99.9 8.2E-26 1.8E-30 227.2 12.5 183 390-596 24-217 (232)
33 PRK07609 CDP-6-deoxy-delta-3,4 99.9 1.1E-25 2.4E-30 239.2 13.3 179 391-596 133-319 (339)
34 PRK06703 flavodoxin; Provision 99.9 6.4E-25 1.4E-29 206.0 16.9 148 6-158 1-149 (151)
35 cd06209 BenDO_FAD_NAD Benzoate 99.9 1.5E-25 3.2E-30 224.8 13.2 178 390-596 31-214 (228)
36 cd06210 MMO_FAD_NAD_binding Me 99.9 1.4E-25 3.1E-30 226.0 12.5 181 390-596 35-222 (236)
37 PRK05464 Na(+)-translocating N 99.9 2.1E-25 4.5E-30 242.4 14.6 180 403-596 208-394 (409)
38 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.5E-25 3.3E-30 226.6 12.6 203 390-627 25-241 (241)
39 PRK11872 antC anthranilate dio 99.9 1.8E-25 3.8E-30 237.3 13.4 178 391-596 138-322 (340)
40 cd06187 O2ase_reductase_like T 99.9 2.9E-25 6.3E-30 221.9 14.1 179 391-596 25-211 (224)
41 PRK13289 bifunctional nitric o 99.9 2.6E-25 5.7E-30 241.5 14.1 177 391-596 186-379 (399)
42 TIGR01941 nqrF NADH:ubiquinone 99.9 3.6E-25 7.8E-30 240.3 14.9 180 403-596 204-390 (405)
43 cd06212 monooxygenase_like The 99.9 3.3E-25 7.2E-30 222.9 13.1 180 390-596 30-218 (232)
44 PRK08345 cytochrome-c3 hydroge 99.9 3.2E-25 7E-30 230.0 12.9 179 390-597 38-234 (289)
45 cd06213 oxygenase_e_transfer_s 99.9 7.1E-25 1.5E-29 219.8 13.4 177 391-596 29-214 (227)
46 PRK10684 HCP oxidoreductase, N 99.9 5.5E-25 1.2E-29 233.0 13.1 182 390-596 37-224 (332)
47 cd06191 FNR_iron_sulfur_bindin 99.9 7E-25 1.5E-29 220.4 12.5 178 390-596 28-218 (231)
48 cd06194 FNR_N-term_Iron_sulfur 99.9 1.7E-24 3.8E-29 216.1 14.2 180 390-596 24-208 (222)
49 PRK05713 hypothetical protein; 99.9 9.6E-25 2.1E-29 229.1 12.1 173 391-596 120-295 (312)
50 cd06184 flavohem_like_fad_nad_ 99.9 3.5E-24 7.5E-29 217.5 13.1 178 390-596 37-230 (247)
51 cd06221 sulfite_reductase_like 99.9 4.7E-24 1E-28 217.3 13.2 179 390-597 28-212 (253)
52 cd06215 FNR_iron_sulfur_bindin 99.9 5.3E-24 1.1E-28 213.8 12.9 179 390-596 28-218 (231)
53 cd06196 FNR_like_1 Ferredoxin 99.9 4.4E-24 9.6E-29 212.6 11.2 175 390-596 28-207 (218)
54 PRK06756 flavodoxin; Provision 99.9 3.2E-23 7E-28 193.8 16.0 146 6-156 1-147 (148)
55 cd06216 FNR_iron_sulfur_bindin 99.9 8.9E-24 1.9E-28 214.0 12.6 178 391-596 47-231 (243)
56 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.6E-23 3.5E-28 212.4 13.2 171 390-597 25-202 (246)
57 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.6E-23 3.6E-28 223.6 11.8 184 391-597 34-229 (352)
58 cd06217 FNR_iron_sulfur_bindin 99.9 1.9E-23 4.1E-28 210.4 11.6 179 390-596 31-222 (235)
59 cd06198 FNR_like_3 NAD(P) bind 99.9 2.9E-23 6.2E-28 206.5 12.0 174 390-596 23-202 (216)
60 PRK08221 anaerobic sulfite red 99.9 4.2E-23 9E-28 211.3 12.9 173 390-596 33-213 (263)
61 cd06183 cyt_b5_reduct_like Cyt 99.9 5.1E-23 1.1E-27 207.0 12.0 180 390-596 29-223 (234)
62 cd06185 PDR_like Phthalate dio 99.9 8.6E-23 1.9E-27 202.2 13.4 170 390-596 26-197 (211)
63 cd06214 PA_degradation_oxidore 99.9 8E-23 1.7E-27 206.7 13.1 182 390-596 33-227 (241)
64 COG1018 Hmp Flavodoxin reducta 99.9 7.8E-23 1.7E-27 208.0 12.9 176 391-597 36-218 (266)
65 PTZ00274 cytochrome b5 reducta 99.9 6.4E-23 1.4E-27 214.8 12.0 180 391-593 83-281 (325)
66 PRK09271 flavodoxin; Provision 99.9 5.1E-22 1.1E-26 188.0 16.4 140 7-156 1-147 (160)
67 PTZ00319 NADH-cytochrome B5 re 99.9 1.1E-22 2.5E-27 211.8 12.8 193 391-596 65-289 (300)
68 TIGR02911 sulfite_red_B sulfit 99.9 1E-22 2.3E-27 208.1 12.2 173 390-596 31-211 (261)
69 TIGR01753 flav_short flavodoxi 99.9 7.4E-22 1.6E-26 182.4 14.3 138 9-152 1-139 (140)
70 PRK00054 dihydroorotate dehydr 99.9 5.5E-22 1.2E-26 201.8 12.1 165 390-596 32-202 (250)
71 PRK06222 ferredoxin-NADP(+) re 99.9 5.1E-22 1.1E-26 205.3 11.9 171 391-597 29-203 (281)
72 PRK12359 flavodoxin FldB; Prov 99.9 4.7E-21 1E-25 181.9 16.8 144 7-157 1-169 (172)
73 cd06219 DHOD_e_trans_like1 FAD 99.9 7.1E-22 1.5E-26 200.7 11.9 170 391-596 28-201 (248)
74 COG0543 UbiB 2-polyprenylpheno 99.9 1.3E-21 2.9E-26 198.7 13.4 176 390-597 36-214 (252)
75 cd06220 DHOD_e_trans_like2 FAD 99.9 1.6E-21 3.4E-26 196.3 11.9 164 390-597 24-189 (233)
76 cd06192 DHOD_e_trans_like FAD/ 99.9 2.3E-21 5E-26 196.4 11.8 171 390-598 25-201 (243)
77 TIGR01754 flav_RNR ribonucleot 99.9 7.2E-21 1.6E-25 176.2 13.9 133 7-152 1-139 (140)
78 COG0716 FldA Flavodoxins [Ener 99.8 1.4E-20 3.1E-25 176.4 15.2 145 6-155 1-150 (151)
79 cd06197 FNR_like_2 FAD/NAD(P) 99.8 1E-20 2.3E-25 188.6 11.4 157 391-596 27-211 (220)
80 TIGR01752 flav_long flavodoxin 99.8 4.4E-20 9.4E-25 176.0 15.1 116 8-130 1-118 (167)
81 COG2871 NqrF Na+-transporting 99.8 1.6E-20 3.4E-25 183.5 11.9 183 404-600 210-399 (410)
82 PRK05802 hypothetical protein; 99.8 1.5E-20 3.2E-25 197.1 11.6 168 391-597 96-276 (320)
83 PLN02252 nitrate reductase [NA 99.8 2.7E-20 5.9E-25 216.6 13.4 191 391-596 666-877 (888)
84 KOG0534 NADH-cytochrome b-5 re 99.8 2.9E-19 6.2E-24 180.7 14.4 159 403-589 98-267 (286)
85 PRK09267 flavodoxin FldA; Vali 99.8 9.2E-19 2E-23 167.4 15.1 144 6-156 1-167 (169)
86 PTZ00306 NADH-dependent fumara 99.8 2.4E-19 5.2E-24 217.0 12.5 182 390-597 948-1151(1167)
87 COG4097 Predicted ferric reduc 99.8 4.1E-19 9E-24 180.1 11.2 176 389-597 242-423 (438)
88 PRK12778 putative bifunctional 99.8 4.2E-19 9.1E-24 207.4 12.6 171 390-596 28-202 (752)
89 KOG1160 Fe-S oxidoreductase [E 99.8 2.6E-18 5.7E-23 176.4 14.9 144 7-159 47-195 (601)
90 cd06193 siderophore_interactin 99.8 1.8E-18 4E-23 174.3 9.2 169 391-596 28-219 (235)
91 cd06186 NOX_Duox_like_FAD_NADP 99.7 5.9E-18 1.3E-22 167.5 9.9 160 390-596 25-197 (210)
92 PRK11921 metallo-beta-lactamas 99.7 1.7E-17 3.7E-22 179.6 12.7 143 4-156 245-393 (394)
93 PRK12779 putative bifunctional 99.7 2.3E-17 5E-22 194.7 14.4 181 390-596 677-868 (944)
94 TIGR00333 nrdI ribonucleoside- 99.7 5.3E-17 1.1E-21 145.3 11.6 92 11-121 1-93 (125)
95 PRK05569 flavodoxin; Provision 99.7 7.2E-17 1.6E-21 149.5 12.8 138 6-153 1-140 (141)
96 PRK05568 flavodoxin; Provision 99.7 1.1E-16 2.4E-21 148.4 12.9 139 6-154 1-141 (142)
97 PRK12775 putative trifunctiona 99.7 4.9E-17 1.1E-21 193.6 12.6 170 390-596 28-202 (1006)
98 PF00175 NAD_binding_1: Oxidor 99.7 3.3E-17 7.1E-22 144.5 7.2 104 477-592 1-109 (109)
99 PRK05452 anaerobic nitric oxid 99.7 1.2E-16 2.5E-21 176.3 13.0 142 5-157 250-397 (479)
100 PRK03600 nrdI ribonucleotide r 99.6 1.2E-14 2.5E-19 132.4 11.7 125 7-154 1-130 (134)
101 PRK06242 flavodoxin; Provision 99.5 7.8E-14 1.7E-18 130.5 11.8 133 7-155 1-149 (150)
102 PRK02551 flavoprotein NrdI; Pr 99.5 1.9E-13 4.1E-18 126.6 12.7 135 6-154 1-151 (154)
103 PLN02292 ferric-chelate reduct 99.5 1.2E-13 2.5E-18 156.8 12.9 174 390-587 352-550 (702)
104 PLN02844 oxidoreductase/ferric 99.5 1.1E-13 2.4E-18 157.5 12.0 175 391-586 340-538 (722)
105 PLN02631 ferric-chelate reduct 99.5 7.2E-14 1.6E-18 158.1 10.4 143 391-552 336-493 (699)
106 PRK11104 hemG protoporphyrinog 99.5 3E-13 6.5E-18 130.0 12.6 87 7-101 1-87 (177)
107 PRK03767 NAD(P)H:quinone oxido 99.4 5.1E-12 1.1E-16 124.1 14.6 125 6-132 1-146 (200)
108 TIGR01755 flav_wrbA NAD(P)H:qu 99.3 8.3E-12 1.8E-16 122.2 12.4 121 7-129 1-142 (197)
109 COG0426 FpaA Uncharacterized f 99.3 4.9E-12 1.1E-16 132.5 10.9 137 6-152 246-386 (388)
110 PRK07116 flavodoxin; Provision 99.2 2E-10 4.4E-15 108.7 10.7 127 6-152 2-158 (160)
111 PF07972 Flavodoxin_NdrI: NrdI 99.1 1.9E-10 4.2E-15 102.3 9.0 95 11-119 1-100 (122)
112 PF12724 Flavodoxin_5: Flavodo 99.1 7.9E-10 1.7E-14 102.7 13.5 86 10-103 1-86 (143)
113 KOG3378 Globins and related he 99.1 2.2E-11 4.7E-16 119.1 3.1 80 406-496 202-286 (385)
114 COG4635 HemG Flavodoxin [Energ 99.1 4.2E-10 9.1E-15 102.2 10.1 110 7-124 1-113 (175)
115 COG1780 NrdI Protein involved 99.0 1.9E-09 4E-14 95.7 10.9 129 7-157 1-134 (141)
116 PF12641 Flavodoxin_3: Flavodo 99.0 1.8E-09 3.9E-14 101.6 11.5 108 10-135 1-110 (160)
117 PF03358 FMN_red: NADPH-depend 98.7 3.2E-08 7E-13 92.6 8.3 119 7-129 1-142 (152)
118 PF12682 Flavodoxin_4: Flavodo 98.5 3E-07 6.5E-12 86.5 8.9 123 8-152 1-156 (156)
119 PRK10569 NAD(P)H-dependent FMN 98.5 2.8E-06 6.2E-11 82.7 14.3 116 7-129 1-135 (191)
120 PF08030 NAD_binding_6: Ferric 98.5 2.7E-07 5.9E-12 86.6 6.5 72 474-551 3-79 (156)
121 TIGR03567 FMN_reduc_SsuE FMN r 98.4 4.7E-06 1E-10 79.8 14.0 116 8-130 1-135 (171)
122 PF00970 FAD_binding_6: Oxidor 98.4 8E-08 1.7E-12 83.1 0.9 66 390-467 30-98 (99)
123 PRK06567 putative bifunctional 98.3 8.7E-07 1.9E-11 103.4 8.3 111 378-511 804-924 (1028)
124 PRK00170 azoreductase; Reviewe 98.2 2E-05 4.3E-10 77.4 14.0 147 6-156 1-195 (201)
125 PRK06934 flavodoxin; Provision 98.2 8.9E-06 1.9E-10 80.3 10.5 135 4-152 33-217 (221)
126 KOG0039 Ferric reductase, NADH 98.2 4.5E-06 9.7E-11 95.7 9.7 125 391-528 383-536 (646)
127 TIGR03566 FMN_reduc_MsuE FMN r 98.2 1.9E-05 4.1E-10 75.8 11.5 115 8-129 1-137 (174)
128 PRK01355 azoreductase; Reviewe 98.1 5.5E-05 1.2E-09 74.3 14.4 152 6-158 1-194 (199)
129 PRK09739 hypothetical protein; 98.1 5E-05 1.1E-09 74.6 13.4 151 6-157 3-195 (199)
130 COG0655 WrbA Multimeric flavod 98.0 1.9E-05 4.2E-10 78.0 8.9 120 6-128 3-149 (207)
131 PF02525 Flavodoxin_2: Flavodo 97.9 0.00011 2.4E-09 72.1 12.4 148 7-156 1-199 (199)
132 PRK13556 azoreductase; Provisi 97.8 0.00041 9E-09 68.6 14.6 148 6-157 1-202 (208)
133 TIGR02690 resist_ArsH arsenica 97.6 0.00083 1.8E-08 66.5 13.0 122 4-128 24-162 (219)
134 COG2375 ViuB Siderophore-inter 97.5 0.00086 1.9E-08 67.6 11.5 165 403-608 85-250 (265)
135 PRK04930 glutathione-regulated 97.2 0.014 3.1E-07 56.3 14.9 152 4-159 3-178 (184)
136 KOG3135 1,4-benzoquinone reduc 97.1 0.0012 2.5E-08 61.0 6.3 127 6-135 1-148 (203)
137 PRK13555 azoreductase; Provisi 97.0 0.017 3.7E-07 57.0 14.3 121 6-127 1-175 (208)
138 COG0431 Predicted flavoprotein 96.0 0.19 4.1E-06 48.6 13.9 116 7-129 1-136 (184)
139 PRK00871 glutathione-regulated 94.7 0.66 1.4E-05 44.5 13.0 145 9-157 2-168 (176)
140 COG2249 MdaB Putative NADPH-qu 93.1 1.6 3.5E-05 42.3 12.3 150 7-159 1-187 (189)
141 PF08021 FAD_binding_9: Sidero 92.7 0.087 1.9E-06 47.0 2.8 52 404-466 66-117 (117)
142 PF08022 FAD_binding_8: FAD-bi 91.3 0.033 7.1E-07 48.7 -1.6 34 391-426 31-69 (105)
143 PF09314 DUF1972: Domain of un 89.1 10 0.00022 36.7 13.3 117 6-130 1-125 (185)
144 KOG0560 Sulfite reductase (fer 87.8 0.26 5.6E-06 53.1 1.5 63 97-159 1-69 (638)
145 KOG4530 Predicted flavoprotein 84.6 6.5 0.00014 36.6 8.5 87 6-101 10-127 (199)
146 PRK02261 methylaspartate mutas 81.0 27 0.00058 32.0 11.5 124 7-153 2-134 (137)
147 cd05566 PTS_IIB_galactitol PTS 77.5 7.1 0.00015 32.5 6.0 57 7-64 1-59 (89)
148 PLN03116 ferredoxin--NADP+ red 71.3 7.9 0.00017 40.5 5.9 44 230-274 24-68 (307)
149 COG1810 Uncharacterized protei 67.7 85 0.0018 31.1 11.5 120 6-156 1-133 (224)
150 PRK05928 hemD uroporphyrinogen 67.6 16 0.00035 36.3 7.1 93 6-127 1-103 (249)
151 PF06283 ThuA: Trehalose utili 66.1 19 0.00042 35.5 7.1 73 8-81 1-79 (217)
152 cd02072 Glm_B12_BD B12 binding 65.9 52 0.0011 29.8 9.1 110 11-132 2-117 (128)
153 cd07371 2A5CPDO_AB The alpha a 63.1 32 0.00069 35.3 8.3 82 20-106 86-177 (268)
154 TIGR01501 MthylAspMutase methy 62.6 55 0.0012 29.9 8.7 111 10-132 3-119 (134)
155 PRK05752 uroporphyrinogen-III 62.0 29 0.00062 35.2 7.7 84 22-129 13-107 (255)
156 cd03142 GATase1_ThuA Type 1 gl 61.8 32 0.0007 34.1 7.7 70 23-102 24-98 (215)
157 PRK10310 PTS system galactitol 61.5 14 0.00031 31.4 4.5 36 8-43 4-39 (94)
158 PF08357 SEFIR: SEFIR domain; 60.5 22 0.00047 32.7 6.0 56 7-62 1-67 (150)
159 cd05567 PTS_IIB_mannitol PTS_I 59.9 26 0.00055 29.2 5.7 36 7-42 1-36 (87)
160 cd00578 L-fuc_L-ara-isomerases 59.3 47 0.001 36.8 9.4 126 8-151 2-151 (452)
161 PF04295 GD_AH_C: D-galactarat 58.9 87 0.0019 34.0 10.8 128 6-156 17-144 (396)
162 PRK09590 celB cellobiose phosp 58.2 13 0.00028 32.4 3.7 37 6-43 1-37 (104)
163 PF09651 Cas_APE2256: CRISPR-a 57.3 14 0.0003 33.9 3.9 38 9-46 24-61 (136)
164 cd05563 PTS_IIB_ascorbate PTS_ 56.6 29 0.00062 28.6 5.5 45 8-55 1-47 (86)
165 cd06200 SiR_like1 Cytochrome p 55.8 22 0.00048 35.8 5.6 42 234-275 3-44 (245)
166 PRK06490 glutamine amidotransf 54.7 36 0.00078 34.3 6.8 73 5-81 6-80 (239)
167 cd07363 45_DOPA_Dioxygenase Th 54.3 38 0.00082 34.4 7.0 79 20-106 79-164 (253)
168 COG0429 Predicted hydrolase of 54.0 76 0.0017 33.5 9.1 98 7-126 76-173 (345)
169 PRK14192 bifunctional 5,10-met 53.1 2.1E+02 0.0045 29.7 12.2 110 6-125 33-185 (283)
170 COG1182 AcpD Acyl carrier prot 51.8 2.4E+02 0.0053 27.6 15.1 121 6-127 1-172 (202)
171 COG1587 HemD Uroporphyrinogen- 49.7 58 0.0013 32.8 7.5 85 22-129 11-103 (248)
172 TIGR00853 pts-lac PTS system, 49.5 24 0.00051 30.2 3.9 55 5-61 2-57 (95)
173 COG3414 SgaB Phosphotransferas 49.3 53 0.0011 28.0 5.9 56 6-64 1-58 (93)
174 COG0493 GltD NADPH-dependent g 49.2 71 0.0015 35.5 8.6 101 22-130 174-292 (457)
175 PF00970 FAD_binding_6: Oxidor 48.2 41 0.00089 28.2 5.3 37 233-274 3-41 (99)
176 PRK10427 putative PTS system f 47.1 40 0.00086 29.9 5.0 57 6-62 2-66 (114)
177 cd00133 PTS_IIB PTS_IIB: subun 46.7 43 0.00094 26.6 5.0 30 8-37 1-30 (84)
178 cd07373 2A5CPDO_A The alpha su 45.3 83 0.0018 32.3 7.9 81 20-106 89-180 (271)
179 PRK13886 conjugal transfer pro 45.1 3E+02 0.0065 27.8 11.6 110 6-129 1-119 (241)
180 PRK01231 ppnK inorganic polyph 43.9 1E+02 0.0022 32.1 8.4 38 5-42 3-40 (295)
181 PF02302 PTS_IIB: PTS system, 43.8 27 0.00058 28.9 3.4 56 8-64 1-57 (90)
182 cd05568 PTS_IIB_bgl_like PTS_I 42.2 17 0.00037 29.6 1.9 51 8-59 2-52 (85)
183 cd02067 B12-binding B12 bindin 41.0 1.7E+02 0.0038 25.4 8.4 102 11-130 2-109 (119)
184 KOG1160 Fe-S oxidoreductase [E 40.7 43 0.00093 36.4 4.9 144 9-152 360-511 (601)
185 PF04908 SH3BGR: SH3-binding, 40.2 66 0.0014 27.7 5.2 39 7-45 1-41 (99)
186 PF07583 PSCyt2: Protein of un 40.0 1E+02 0.0022 30.5 7.1 30 316-345 20-50 (208)
187 PRK06827 phosphoribosylpyropho 39.8 1.7E+02 0.0037 31.7 9.5 28 1-31 1-28 (382)
188 TIGR02667 moaB_proteo molybden 39.2 28 0.00062 32.8 3.1 39 90-128 2-40 (163)
189 PRK08811 uroporphyrinogen-III 38.8 1.2E+02 0.0027 30.9 8.0 82 21-128 27-118 (266)
190 KOG4723 Uncharacterized conser 38.7 1.6E+02 0.0034 28.9 7.9 116 503-628 18-140 (248)
191 KOG1838 Alpha/beta hydrolase [ 38.4 2.8E+02 0.006 30.4 10.6 100 5-126 124-223 (409)
192 cd07367 CarBb CarBb is the B s 36.8 2E+02 0.0042 29.5 9.1 84 20-106 89-184 (268)
193 PRK06975 bifunctional uroporph 36.8 92 0.002 36.4 7.4 88 6-125 3-101 (656)
194 TIGR00322 diphth2_R diphthamid 35.9 49 0.0011 35.1 4.6 49 6-54 232-281 (332)
195 PF04703 FaeA: FaeA-like prote 35.4 85 0.0018 24.6 4.6 27 598-624 21-47 (62)
196 PRK09622 porA pyruvate flavodo 35.3 2.5E+02 0.0054 30.7 10.1 91 7-106 269-369 (407)
197 PRK14194 bifunctional 5,10-met 34.9 5.6E+02 0.012 26.9 13.3 112 6-127 33-187 (301)
198 cd05564 PTS_IIB_chitobiose_lic 34.9 53 0.0011 28.0 3.8 84 8-109 1-86 (96)
199 COG2185 Sbm Methylmalonyl-CoA 34.4 1.1E+02 0.0023 28.4 5.8 96 16-130 22-122 (143)
200 cd06578 HemD Uroporphyrinogen- 34.3 1.4E+02 0.0031 29.0 7.5 83 24-129 10-102 (239)
201 cd07372 2A5CPDO_B The beta sub 33.5 2.1E+02 0.0046 29.8 8.8 84 19-106 96-194 (294)
202 cd02071 MM_CoA_mut_B12_BD meth 33.2 2.3E+02 0.0051 25.0 7.9 103 11-131 2-110 (122)
203 PF03345 DDOST_48kD: Oligosacc 33.1 3E+02 0.0066 30.3 10.1 98 9-126 1-104 (423)
204 PRK13609 diacylglycerol glucos 32.8 70 0.0015 34.2 5.3 33 5-37 3-35 (380)
205 PRK05907 hypothetical protein; 32.8 5.1E+02 0.011 27.2 11.5 124 7-157 18-151 (311)
206 PRK01372 ddl D-alanine--D-alan 32.7 86 0.0019 32.4 5.8 55 7-61 5-64 (304)
207 PF04954 SIP: Siderophore-inte 32.6 72 0.0016 28.2 4.5 97 474-596 3-101 (119)
208 PF02826 2-Hacid_dh_C: D-isome 32.6 94 0.002 29.5 5.6 34 87-128 31-64 (178)
209 PRK14569 D-alanyl-alanine synt 32.4 93 0.002 32.3 6.0 72 6-79 3-80 (296)
210 cd05014 SIS_Kpsf KpsF-like pro 32.4 3.3E+02 0.0071 23.7 8.9 66 11-82 4-72 (128)
211 PRK02645 ppnK inorganic polyph 32.2 1E+02 0.0022 32.3 6.2 38 5-42 2-39 (305)
212 PF01866 Diphthamide_syn: Puta 32.0 75 0.0016 33.3 5.2 51 5-55 208-259 (307)
213 PF13380 CoA_binding_2: CoA bi 32.0 1.4E+02 0.003 26.3 6.1 99 8-131 2-110 (116)
214 cd05005 SIS_PHI Hexulose-6-pho 31.9 4.4E+02 0.0095 24.8 10.6 65 10-82 36-100 (179)
215 PRK07168 bifunctional uroporph 31.8 60 0.0013 36.3 4.6 84 21-126 260-351 (474)
216 cd06217 FNR_iron_sulfur_bindin 31.6 77 0.0017 31.2 5.0 38 233-275 5-43 (235)
217 PRK14841 undecaprenyl pyrophos 31.3 1.5E+02 0.0033 29.8 6.9 74 523-601 38-117 (233)
218 TIGR00412 redox_disulf_2 small 31.0 1.1E+02 0.0023 24.6 4.9 36 11-46 4-39 (76)
219 PLN02516 methylenetetrahydrofo 30.9 5.2E+02 0.011 27.1 11.0 111 6-126 39-194 (299)
220 cd06212 monooxygenase_like The 30.7 93 0.002 30.7 5.5 38 233-275 4-42 (232)
221 PF13433 Peripla_BP_5: Peripla 30.6 1.1E+02 0.0024 32.8 6.2 52 69-130 117-169 (363)
222 cd06196 FNR_like_1 Ferredoxin 30.5 83 0.0018 30.6 5.0 37 233-275 4-40 (218)
223 COG0104 PurA Adenylosuccinate 30.4 43 0.00092 36.2 3.0 30 67-103 389-418 (430)
224 PRK15438 erythronate-4-phospha 29.7 78 0.0017 34.3 4.9 32 89-128 113-144 (378)
225 cd05008 SIS_GlmS_GlmD_1 SIS (S 29.7 3.7E+02 0.0081 23.3 9.9 66 11-82 3-71 (126)
226 PRK09189 uroporphyrinogen-III 29.4 1.7E+02 0.0036 29.2 7.1 80 24-128 12-98 (240)
227 PF11132 SplA: Transcriptional 29.4 40 0.00087 27.1 1.9 17 261-277 4-20 (75)
228 PRK00553 ribose-phosphate pyro 29.3 4.3E+02 0.0094 28.0 10.4 25 5-32 6-30 (332)
229 PRK07452 DNA polymerase III su 29.1 6.7E+02 0.015 26.0 12.1 40 7-46 1-43 (326)
230 PF02080 TrkA_C: TrkA-C domain 29.0 70 0.0015 24.9 3.4 30 257-288 42-71 (71)
231 PRK02812 ribose-phosphate pyro 28.9 4.2E+02 0.0091 28.1 10.2 18 111-128 126-143 (330)
232 PRK07053 glutamine amidotransf 28.8 2.6E+02 0.0057 28.0 8.3 53 6-62 2-56 (234)
233 PRK11404 putative PTS system 28.7 94 0.002 34.8 5.5 58 5-62 2-67 (482)
234 PRK07239 bifunctional uroporph 28.7 1.6E+02 0.0034 31.7 7.2 79 6-99 11-105 (381)
235 PRK02458 ribose-phosphate pyro 28.5 4.4E+02 0.0095 27.9 10.2 18 111-128 114-131 (323)
236 PF13439 Glyco_transf_4: Glyco 28.4 64 0.0014 29.3 3.6 38 9-46 3-40 (177)
237 cd03030 GRX_SH3BGR Glutaredoxi 28.1 1.5E+02 0.0032 25.1 5.4 37 9-45 2-40 (92)
238 PRK13608 diacylglycerol glucos 27.7 78 0.0017 34.2 4.6 32 5-36 4-35 (391)
239 PRK04539 ppnK inorganic polyph 27.6 1.5E+02 0.0033 30.9 6.5 36 6-41 5-40 (296)
240 TIGR00640 acid_CoA_mut_C methy 27.6 2.3E+02 0.005 25.7 6.9 105 9-131 3-113 (132)
241 COG2454 Uncharacterized conser 27.3 98 0.0021 30.2 4.5 43 5-47 127-169 (211)
242 TIGR01470 cysG_Nterm siroheme 27.2 3.8E+02 0.0083 26.1 9.0 92 9-121 70-164 (205)
243 cd06213 oxygenase_e_transfer_s 27.1 1.1E+02 0.0024 30.0 5.3 37 233-275 4-40 (227)
244 TIGR01917 gly_red_sel_B glycin 27.1 5E+02 0.011 28.5 10.3 70 18-130 319-388 (431)
245 COG0296 GlgB 1,4-alpha-glucan 27.0 1.6E+02 0.0035 34.0 7.0 70 13-83 152-226 (628)
246 PRK14177 bifunctional 5,10-met 27.0 5.5E+02 0.012 26.7 10.3 112 6-127 33-187 (284)
247 COG3937 Uncharacterized conser 27.0 40 0.00086 29.3 1.6 37 585-621 20-56 (108)
248 TIGR00106 uncharacterized prot 26.8 4E+02 0.0088 22.8 9.3 59 72-138 20-81 (97)
249 COG1587 HemD Uroporphyrinogen- 26.8 2.7E+02 0.0059 27.9 8.1 81 25-128 136-227 (248)
250 cd01075 NAD_bind_Leu_Phe_Val_D 26.8 1.4E+02 0.0031 29.0 5.8 32 88-127 24-55 (200)
251 PRK00257 erythronate-4-phospha 26.7 1E+02 0.0022 33.5 5.1 32 88-127 112-143 (381)
252 PRK09212 pyruvate dehydrogenas 26.6 1.1E+02 0.0024 32.4 5.3 67 8-78 204-277 (327)
253 COG0514 RecQ Superfamily II DN 26.5 1.6E+02 0.0035 33.8 6.8 93 8-106 231-342 (590)
254 cd07952 ED_3B_like Uncharacter 26.4 2.7E+02 0.0058 28.2 8.0 81 19-105 78-172 (256)
255 cd06190 T4MO_e_transfer_like T 26.4 88 0.0019 30.8 4.4 34 236-275 3-36 (232)
256 PRK11538 ribosome-associated p 26.1 2.1E+02 0.0046 24.9 6.1 41 20-64 3-44 (105)
257 PF02602 HEM4: Uroporphyrinoge 25.9 26 0.00057 34.5 0.4 81 26-127 2-95 (231)
258 PF12076 Wax2_C: WAX2 C-termin 25.6 57 0.0012 30.6 2.5 32 16-47 3-34 (164)
259 PRK08250 glutamine amidotransf 25.6 3E+02 0.0065 27.5 8.0 54 7-64 1-56 (235)
260 cd05565 PTS_IIB_lactose PTS_II 25.5 1E+02 0.0022 26.5 4.0 75 9-98 3-78 (99)
261 PRK02290 3-dehydroquinate synt 25.3 84 0.0018 33.3 4.0 63 400-481 217-285 (344)
262 COG4195 Phage-related replicat 25.3 1.6E+02 0.0035 28.4 5.5 29 17-45 119-147 (208)
263 cd06184 flavohem_like_fad_nad_ 25.1 1.4E+02 0.003 29.7 5.6 38 233-275 10-49 (247)
264 PRK02155 ppnK NAD(+)/NADH kina 25.0 1.6E+02 0.0036 30.5 6.2 40 1-41 1-40 (291)
265 PRK10792 bifunctional 5,10-met 24.9 7.9E+02 0.017 25.5 11.5 110 7-126 34-186 (285)
266 cd03805 GT1_ALG2_like This fam 24.6 95 0.0021 32.9 4.6 38 7-44 1-39 (392)
267 TIGR03682 arCOG04112 arCOG0411 24.5 99 0.0021 32.5 4.5 50 6-55 212-262 (308)
268 TIGR02619 putative CRISPR-asso 24.3 1.1E+02 0.0024 28.5 4.3 31 7-37 34-64 (149)
269 cd06218 DHOD_e_trans FAD/NAD b 24.3 92 0.002 31.3 4.1 36 235-275 2-37 (246)
270 cd06209 BenDO_FAD_NAD Benzoate 24.2 1.5E+02 0.0033 29.0 5.7 38 233-275 5-43 (228)
271 PRK14830 undecaprenyl pyrophos 24.1 3.7E+02 0.008 27.4 8.3 72 523-599 57-134 (251)
272 cd06187 O2ase_reductase_like T 24.1 1.2E+02 0.0026 29.5 4.9 35 235-275 2-36 (224)
273 PRK09065 glutamine amidotransf 24.0 2.1E+02 0.0045 28.7 6.6 42 23-64 23-65 (237)
274 cd06215 FNR_iron_sulfur_bindin 24.0 1.3E+02 0.0028 29.5 5.1 37 233-274 2-39 (231)
275 TIGR02298 HpaD_Fe 3,4-dihydrox 24.0 3E+02 0.0065 28.4 7.9 82 20-106 95-186 (282)
276 PTZ00145 phosphoribosylpyropho 23.9 5.5E+02 0.012 28.4 10.1 18 111-128 224-241 (439)
277 cd05569 PTS_IIB_fructose PTS_I 23.9 1.3E+02 0.0028 25.6 4.3 54 11-64 3-64 (96)
278 PTZ00445 p36-lilke protein; Pr 23.9 3.7E+02 0.0079 26.7 7.8 95 18-126 25-131 (219)
279 PF02780 Transketolase_C: Tran 23.7 61 0.0013 28.7 2.4 37 7-47 11-47 (124)
280 PRK02269 ribose-phosphate pyro 23.5 5.7E+02 0.012 26.9 10.0 19 111-129 110-128 (320)
281 PRK13236 nitrogenase reductase 23.3 1.1E+02 0.0024 31.8 4.5 43 1-45 1-44 (296)
282 cd07369 PydA_Rs_like PydA is a 23.2 2.9E+02 0.0064 29.3 7.7 21 20-40 99-119 (329)
283 PF00919 UPF0004: Uncharacteri 22.8 2.8E+02 0.0062 23.7 6.2 67 24-105 16-82 (98)
284 PF01910 DUF77: Domain of unkn 22.7 2.7E+02 0.0058 23.5 6.0 63 68-138 14-79 (92)
285 PLN02494 adenosylhomocysteinas 22.6 2.7E+02 0.0059 31.1 7.5 42 76-127 240-281 (477)
286 cd06214 PA_degradation_oxidore 22.6 1E+02 0.0023 30.4 4.1 37 233-274 5-44 (241)
287 cd07368 PhnC_Bs_like PhnC is a 22.6 3E+02 0.0065 28.3 7.5 84 20-106 94-193 (277)
288 cd06352 PBP1_NPR_GC_like Ligan 22.5 2.9E+02 0.0062 29.4 7.8 84 6-100 137-229 (389)
289 cd05211 NAD_bind_Glu_Leu_Phe_V 22.5 1.6E+02 0.0034 29.2 5.2 31 89-127 20-50 (217)
290 PRK14842 undecaprenyl pyrophos 22.5 2.8E+02 0.006 28.1 7.0 72 524-600 44-121 (241)
291 cd05013 SIS_RpiR RpiR-like pro 22.5 2.8E+02 0.0061 24.1 6.6 69 8-82 14-85 (139)
292 cd06189 flavin_oxioreductase N 22.5 1.6E+02 0.0034 28.9 5.3 37 233-275 2-38 (224)
293 PF13192 Thioredoxin_3: Thiore 22.4 1.4E+02 0.0031 23.8 4.1 39 7-46 1-39 (76)
294 PF01488 Shikimate_DH: Shikima 22.4 1.5E+02 0.0032 26.8 4.7 32 89-128 9-40 (135)
295 PRK04923 ribose-phosphate pyro 22.2 7.1E+02 0.015 26.3 10.3 18 111-128 112-129 (319)
296 cd06183 cyt_b5_reduct_like Cyt 22.2 1.6E+02 0.0034 28.8 5.3 39 233-276 2-42 (234)
297 PRK05788 cobalamin biosynthesi 22.1 41 0.00089 35.4 1.1 57 6-64 3-62 (315)
298 PRK14833 undecaprenyl pyrophos 22.1 2.6E+02 0.0056 28.1 6.7 74 523-601 39-118 (233)
299 COG4009 Uncharacterized protei 21.8 74 0.0016 26.1 2.2 65 58-126 6-76 (88)
300 PRK08051 fre FMN reductase; Va 21.8 1.7E+02 0.0037 28.9 5.5 36 233-274 6-41 (232)
301 PF01959 DHQS: 3-dehydroquinat 21.7 94 0.002 33.1 3.6 64 400-482 227-296 (354)
302 PF00781 DAGK_cat: Diacylglyce 21.7 3.1E+02 0.0067 24.3 6.7 87 8-104 1-94 (130)
303 PRK02649 ppnK inorganic polyph 21.4 2.1E+02 0.0045 30.0 6.1 36 6-41 1-36 (305)
304 PRK00054 dihydroorotate dehydr 21.2 1.6E+02 0.0035 29.5 5.2 38 233-276 8-45 (250)
305 PRK12814 putative NADPH-depend 21.1 2.6E+02 0.0056 32.7 7.5 97 20-127 242-350 (652)
306 cd04795 SIS SIS domain. SIS (S 21.1 2.6E+02 0.0056 22.3 5.6 63 17-83 6-73 (87)
307 cd04962 GT1_like_5 This family 21.0 1.1E+02 0.0025 31.8 4.3 38 7-44 1-38 (371)
308 PRK14840 undecaprenyl pyrophos 20.9 3E+02 0.0064 28.0 6.8 60 542-601 71-136 (250)
309 PRK13527 glutamine amidotransf 20.9 1.6E+02 0.0036 28.4 5.0 51 8-62 2-52 (200)
310 KOG0025 Zn2+-binding dehydroge 20.9 45 0.00097 34.5 1.0 59 263-332 99-160 (354)
311 TIGR00936 ahcY adenosylhomocys 20.8 3.4E+02 0.0074 29.7 7.8 68 36-127 155-222 (406)
312 PRK14828 undecaprenyl pyrophos 20.7 4E+02 0.0087 27.2 7.8 26 574-599 111-136 (256)
313 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.5 3.4E+02 0.0074 24.3 6.8 67 10-82 18-87 (153)
314 cd01741 GATase1_1 Subgroup of 20.4 2.8E+02 0.0061 26.3 6.5 51 9-63 2-56 (188)
315 PRK14186 bifunctional 5,10-met 20.4 9.9E+02 0.022 24.9 11.0 111 6-126 32-185 (297)
316 TIGR00272 DPH2 diphthamide bio 20.3 1.2E+02 0.0026 34.2 4.2 49 6-54 281-330 (496)
317 PRK07609 CDP-6-deoxy-delta-3,4 20.2 2E+02 0.0043 30.3 5.9 38 233-275 106-144 (339)
318 PRK14189 bifunctional 5,10-met 20.2 9.8E+02 0.021 24.8 13.4 112 6-127 32-186 (285)
319 cd07949 PCA_45_Doxase_B_like_1 20.1 5.9E+02 0.013 26.2 9.1 21 20-40 97-117 (276)
320 KOG1448 Ribose-phosphate pyrop 20.1 9E+02 0.02 25.3 10.0 114 6-130 1-127 (316)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=2.6e-119 Score=927.59 Aligned_cols=571 Identities=46% Similarity=0.774 Sum_probs=505.4
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
|+|+|+||||||||+.+|+.|.+++.++|+.+.+..++++++++|.+..+|||+|||+|+|++|+||+.||+.|.+++++
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~~~~~~V~s~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rknLp 80 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRRGLQCLVMSMDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKNLP 80 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhccCCceEeeccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhccch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCCCC
Q 006868 87 KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQ 166 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~~ 166 (628)
...|++++|||||||||+|++||.++|+++++|.+|||+.+++.+++|++++.|.+..|..|..++|..|...+++ .-
T Consensus 81 s~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~i~~p--~~ 158 (574)
T KOG1159|consen 81 STILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKGIYPP--YR 158 (574)
T ss_pred HHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHhhcCC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988772 11
Q ss_pred CCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCccceeeeeeeeecCCCCCC
Q 006868 167 GPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFLKMIKNQPLTKSGSG 246 (628)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~lt~~~~~ 246 (628)
....+..+.. .+++|++-..... +.++....+ +++.. ..| .+++.|++||+++|+
T Consensus 159 -~~t~l~~~~~-~~~k~~~l~~~~~---~~~~d~~~v------------~~~~~-----~~~---~k~~~N~rlT~~~Hf 213 (574)
T KOG1159|consen 159 -PETDLIPTVQ-ITTKYSLLELGKA---SDFSDSDIV------------LEPQG-----QIP---AKLVENRRLTSADHF 213 (574)
T ss_pred -CcccCCCccc-ccchhhhhhcccc---ccCCcchhh------------hcccc-----ccc---cchhcceeecCcchh
Confidence 1111212222 2334443221111 011110100 00000 011 189999999999999
Q ss_pred CcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCccccccHHHHHHh
Q 006868 247 KDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFVEL 326 (628)
Q Consensus 247 ~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~tl~~~l~~ 326 (628)
++|+|++|+++++.+.|+|||++.|+|.|+.+.|++|++.+||++++...+.+....+.-| .+.++.|+|+++++++
T Consensus 214 QDVR~~~F~i~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~~~---~~~~~~p~sl~~~lk~ 290 (574)
T KOG1159|consen 214 QDVRLFEFDIPDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRSSP---LPLLPNPLSLLNLLKY 290 (574)
T ss_pred heeeEEEEecCCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccccc---ccccCCchhHHHHHHH
Confidence 9999999999988999999999999999999999999999999998555554433221111 1246699999999999
Q ss_pred ccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCCccc
Q 006868 327 TMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTR 406 (628)
Q Consensus 327 ~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~~~R 406 (628)
|+||++ +|+++||..|++|++|+.||++|+++++++|.++|++|+.+++||++|+|++|+++++|.+++++.+|.++||
T Consensus 291 ~~D~~S-vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~~P~IrPR 369 (574)
T KOG1159|consen 291 VLDFNS-VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDLLPVIRPR 369 (574)
T ss_pred hccccc-CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHhccccccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC-CCCCCEEEEeCCCChH
Q 006868 407 AFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCA 485 (628)
Q Consensus 407 ~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~~~piimIa~GtGIA 485 (628)
+|||||+|.. ..++|+|++|+|+|..++.|.|+||+||++|++ |+.|.+.+.+|.+..| +.++|+||||+|||||
T Consensus 370 ~fSIas~~~~--~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~--g~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvA 445 (574)
T KOG1159|consen 370 AFSIASSPGA--HHLELLVAIVEYKTILKEPRRGLCSNWLASLKP--GDEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVA 445 (574)
T ss_pred eeeeccCCCC--CceeEEEEEEEEeeeccccccchhHHHHhhcCC--CCeEEEEEecCccccCCCCCCCeEEEcCCCCcc
Confidence 9999999943 349999999999999999999999999999999 9999999999999999 7799999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcH
Q 006868 486 PFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQS 564 (628)
Q Consensus 486 Pfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~ 564 (628)
||||++++|..++. .+..||||||+++ ||+|.+||.+..+. ..+.|||||+++|.||||.|++.+
T Consensus 446 PfRa~i~er~~q~~----~~~~lFfGCR~K~~Df~y~~eW~~~~~~----------~~~~AFSRDqe~kvYVQh~i~e~g 511 (574)
T KOG1159|consen 446 PFRALIQERIYQGD----KENVLFFGCRNKDKDFLYEDEWTELNKR----------AFHTAFSRDQEQKVYVQHKIRENG 511 (574)
T ss_pred cHHHHHHHHHhhcc----CCceEEEecccCCccccccchhhhhhcc----------hhhhhcccccccceeHHHHHHHhh
Confidence 99999999998554 5669999999999 99999999998877 445699999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 565 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 565 ~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
..+|+++.+ ||.+||||+++.|+.+|+++|.+|+++.++.+.|.|. ||+.|++++||+.|+|
T Consensus 512 ~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW 574 (574)
T KOG1159|consen 512 EEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW 574 (574)
T ss_pred HHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence 999999985 9999999999999999999999999999999777777 9999999999999999
No 2
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=5.5e-105 Score=891.99 Aligned_cols=536 Identities=29% Similarity=0.483 Sum_probs=471.9
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
+|++++|+|||||||||.+|++|++.+.+.|+.+.+.+++++++.+|.+++.+||++||||+|++|+|+..||++|...+
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~g~~~~v~~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~ 139 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAAKLNVNLVNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK 139 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhCCCCcEEechHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCC
Q 006868 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFF 164 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~ 164 (628)
.+. |.|++||||||||++|++||.++|.++++|+++||+++.+++++|.. +++.+++|.+++|+.|.+..+ .
T Consensus 140 ~~~--L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~~----~e~~~~~W~~~~~~~l~~~~~--~ 211 (600)
T PRK10953 140 APK--LENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADVE----YQAAASEWRARVVDALKSRAP--A 211 (600)
T ss_pred CcC--CCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeecccccccc----cHHHHHHHHHHHHHHHHhhcC--C
Confidence 443 99999999999999999999999999999999999999999888754 788999999999999976554 1
Q ss_pred CCCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCCC
Q 006868 165 PQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKS 243 (628)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~~ 243 (628)
.. . .. . ....... .. . . . ..+....+|. +|+.|++||++
T Consensus 212 ~~-~--~~--~---~~~~~~~----~~-~-----------------~--~--------~~~~~~~p~~a~v~~n~~Lt~~ 251 (600)
T PRK10953 212 VA-A--PS--Q---SVATGAV----NE-I-----------------H--T--------SPYSKEAPLTASLSVNQKITGR 251 (600)
T ss_pred cc-c--cc--c---ccccccc----cc-c-----------------c--c--------CCCCCCCCeEEEEEEEeecCCC
Confidence 10 0 00 0 0000000 00 0 0 0 0011233455 99999999999
Q ss_pred CCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCccccccHHHH
Q 006868 244 GSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTF 323 (628)
Q Consensus 244 ~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~tl~~~ 323 (628)
++.++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.. .++|++++
T Consensus 252 ~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~----------------~~~tl~~~ 315 (600)
T PRK10953 252 NSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG----------------KTLPLAEA 315 (600)
T ss_pred CCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC----------------CCCCHHHH
Confidence 99999999999998789999999999999999999999999999999998887631 57899999
Q ss_pred HHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCC
Q 006868 324 VELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPL 403 (628)
Q Consensus 324 l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~ 403 (628)
|++|+||+. |++.||+.++.++.++. |+++.. +.+.+.+|.. +++++|+|++|| ++++.++++..+|++
T Consensus 316 l~~~~dl~~--~~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~ll~~l 384 (600)
T PRK10953 316 LQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGLLRPL 384 (600)
T ss_pred HHHhcccCC--CcHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHhCCCC
Confidence 999999996 57899999999998754 333432 4556667754 799999999998 689999999999999
Q ss_pred cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC-CCCCC-CCCCCEEEEeC
Q 006868 404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGP 480 (628)
Q Consensus 404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g-~F~lp-~~~~piimIa~ 480 (628)
+||+|||||+|..++++++|+|++|+|.. .++.+.|+||+||. .+++ |++|.+.+++| .|++| ++.+|+||||+
T Consensus 385 ~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp~~~~~piImIg~ 461 (600)
T PRK10953 385 TPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEE--EGEVRVFIEHNDNFRLPANPETPVIMIGP 461 (600)
T ss_pred CCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCC--CCEEEEEeccCCcccCCCCCCCCEEEEec
Confidence 99999999999777899999999999986 47788999999997 5999 99999999875 89999 78899999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhh
Q 006868 481 GTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHK 559 (628)
Q Consensus 481 GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~ 559 (628)
||||||||||+|+|...+.. +++|||||||++. ||+|++||++|.+. |.++ ++++||||++.+|+||||+
T Consensus 462 GTGIAPfrsflq~r~~~~~~---~~~~LffG~R~~~~D~lY~~El~~~~~~-g~l~-----~l~~afSRd~~~k~YVQ~~ 532 (600)
T PRK10953 462 GTGIAPFRAFMQQRAADGAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GLLT-----RIDLAWSRDQKEKIYVQDK 532 (600)
T ss_pred CcCcHHHHHHHHHHHHcCCC---CCeEEEeeccCCccchhHHHHHHHHHHc-CCcc-----eEEEEECCCCCCCCcHHHH
Confidence 99999999999999876544 8999999999966 99999999999999 9897 8999999999889999999
Q ss_pred HHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 560 MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 560 l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
|.++.+++|+++.++++|||||+++.|+++|+++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 533 l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy 600 (600)
T PRK10953 533 LREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 600 (600)
T ss_pred HHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 99999999999988999999999878999999999999999999999999999999999999999999
No 3
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=9.7e-103 Score=878.81 Aligned_cols=535 Identities=33% Similarity=0.563 Sum_probs=472.4
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
+++|+|+|||+|||||.+|+.|++.+.+.|+.+.+.++++++..++.+++.+||++||||+|++|+|+..|+++|...+.
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~g~~~~v~~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~~ 137 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKKA 137 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhCCCccEEechHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCCC
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFP 165 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~ 165 (628)
+. |+|++|+||||||++|++||.+++.++++|+++||+++.|++.+|.+ +++.|++|.+++|+.|.+..+ ..
T Consensus 138 ~~--L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~~----~e~~~~~W~~~~~~~l~~~~~--~~ 209 (597)
T TIGR01931 138 PK--LENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADLD----YDANAAEWRAGVLTALNEQAK--GS 209 (597)
T ss_pred cc--cCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCccC----hHHHHHHHHHHHHHHHHhhcc--Cc
Confidence 43 89999999999999999999999999999999999999999998864 788999999999999976543 11
Q ss_pred CCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCCCC
Q 006868 166 QGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSG 244 (628)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~~~ 244 (628)
. ..|.+.+.. .... . .. ..+...++|. +|+.|++||+.+
T Consensus 210 ~------------~~~~~~~~~--~~~~--------------------~-----~~-~~~~~~~p~~a~v~~n~~lt~~~ 249 (597)
T TIGR01931 210 A------------STPSLSETP--ARSQ--------------------T-----AT-SVYSKQNPFRAEVLENQKITGRN 249 (597)
T ss_pred c------------CCCcceecc--cccc--------------------c-----cc-CCccCCCCeEEEEEeeEecCCCC
Confidence 0 011111100 0000 0 00 0112233455 999999999999
Q ss_pred CCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCccccccHHHHH
Q 006868 245 SGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFV 324 (628)
Q Consensus 245 ~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~tl~~~l 324 (628)
+.++|+||+|+++++++.|+|||+|+|+|+|+++.|+++|++||+++++.+++.. .++|++++|
T Consensus 250 ~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~~----------------~~~tl~~~l 313 (597)
T TIGR01931 250 SKKDVRHIEIDLEGSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIGG----------------KTIPLFEAL 313 (597)
T ss_pred CCceEEEEEEecCCCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeCC----------------CCcCHHHHH
Confidence 9999999999999889999999999999999999999999999999999887631 678999999
Q ss_pred HhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCCc
Q 006868 325 ELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK 404 (628)
Q Consensus 325 ~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~~ 404 (628)
++|+||+. |++.||+.+|++|+|+..++.| + +.+.+.+|+. +++++|+|.+|| ++++.++++.++|+++
T Consensus 314 ~~~~dl~~--~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~ll~~~~ 382 (597)
T TIGR01931 314 ITHFELTQ--NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISLLRPLT 382 (597)
T ss_pred HhceeCCC--CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHhCcccC
Confidence 99999996 5799999999999998765543 2 5666888875 899999999999 8899999999999999
Q ss_pred ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC-CCCCC-CCCCCEEEEeCC
Q 006868 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGPG 481 (628)
Q Consensus 405 ~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g-~F~lp-~~~~piimIa~G 481 (628)
||+|||||+|..++++++|+|++|+|.. .++.+.|.||+||++ +++ |++|.+.+++| .|++| ++.+|+||||+|
T Consensus 383 ~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp~~~~~piImIg~G 459 (597)
T TIGR01931 383 PRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKE--GDTVPVYIEPNDNFRLPEDPDTPIIMIGPG 459 (597)
T ss_pred CceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCC--CCEEEEEEeeCCcccCCCCCCCCEEEEcCC
Confidence 9999999999767899999999999985 478889999999986 999 99999999764 79999 778999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhH
Q 006868 482 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKM 560 (628)
Q Consensus 482 tGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l 560 (628)
|||||||||+|+|...+.. +++|||||||+.. |++|++||++|.+. +.++ +++++|||++..++||||+|
T Consensus 460 TGIAPfrsflq~r~~~~~~---g~~~LffG~R~~~~D~ly~~El~~~~~~-~~l~-----~l~~afSRd~~~k~yVqd~l 530 (597)
T TIGR01931 460 TGVAPFRAFMQERAEDGAK---GKNWLFFGNPHFTTDFLYQVEWQNYLKK-GVLT-----KMDLAFSRDQAEKIYVQHRI 530 (597)
T ss_pred cCchhHHHHHHHHHHccCC---CCEEEEECCCCCCcchhHHHHHHHHHHc-CCCc-----eeEEEEecCCCCCccHHHHH
Confidence 9999999999999877654 8999999999955 99999999999998 8776 89999999887899999999
Q ss_pred HHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 561 LEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 561 ~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
.++.+++++++.++++|||||++..|+++|.++|.+|++++++++.++|++|+++|+++|||++|||
T Consensus 531 ~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy 597 (597)
T TIGR01931 531 REQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY 597 (597)
T ss_pred HHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 9999999999988999999995559999999999999999999999999999999999999999999
No 4
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-100 Score=842.56 Aligned_cols=537 Identities=39% Similarity=0.669 Sum_probs=486.1
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
...++|+|||+|||++.+|+.+++.+...|+++.+.++++++..++.....++|++||+|+|++|+|+..|+++|...+.
T Consensus 47 ~~~~~il~~sqtG~a~~~A~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~st~geGe~p~na~~f~~~l~~~~a 126 (587)
T COG0369 47 NKPITVLYGSQTGNAEGLAEELAKELEAAGLQVLVASLDDYKPKDIAEERLLLFVVSTQGEGEPPDNAVAFHEFLKGKKA 126 (587)
T ss_pred CCceEEEEccCCccHHHHHHHHHHHHHhcCCceeecchhhcChhhHHhhhceEEEEccccCCCCCCchHHHHHHhccccc
Confidence 56799999999999999999999999999999999999999998888667899999999999999999999999987654
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCCC
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFP 165 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~ 165 (628)
+. |.+.+|+|||+||++|..||.+++.++++|..+||+++.+++++|.+ +++.....|...+++.+...++ ..
T Consensus 127 ~~--L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~---~~e~~~~~w~~~~~~~l~~~~~--~~ 199 (587)
T COG0369 127 PK--LDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ---DFEAAAAPWRDDVLELLKSKFP--GQ 199 (587)
T ss_pred cc--ccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc---ccchhhhHHHHHHHHHHHhhcc--cc
Confidence 44 99999999999999999999999999999999999999999999996 3789999999999999988776 22
Q ss_pred CCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCCCC
Q 006868 166 QGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSG 244 (628)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~~~ 244 (628)
... ....+.. .. . . ..+.++.++. .+..|++|+..+
T Consensus 200 ~~~----------~~~~~~~----~~-------------------~----~------~~~~~~~~~~a~~~~n~~l~~~~ 236 (587)
T COG0369 200 EAA----------PAQVATS----PQ-------------------S----E------SPYSKPAPSVAILLENRKLTGRD 236 (587)
T ss_pred ccc----------cccccch----hc-------------------c----c------ccccccCcceeEeeccccCCccc
Confidence 110 0000000 00 0 0 1112334455 999999999999
Q ss_pred CCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCccccccHHHHH
Q 006868 245 SGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIKLRTFV 324 (628)
Q Consensus 245 ~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~tl~~~l 324 (628)
+.++++||+|++++++++|+|||+++|||+|+++.|+++|+.|||++++.|++. +.++++.++|
T Consensus 237 ~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~----------------~~~~~~~~~l 300 (587)
T COG0369 237 SDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD----------------GETLPLVEAL 300 (587)
T ss_pred cCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC----------------CCcchHHHHH
Confidence 999999999999977999999999999999999999999999999999777431 2789999999
Q ss_pred HhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCCc
Q 006868 325 ELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLK 404 (628)
Q Consensus 325 ~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~~ 404 (628)
++|+|++. .| |.|+..++.|+.++..++.|+.++ ..++..|.. +++++|+|++||++++|.++++..+|+++
T Consensus 301 ~~~~e~~~-~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~l~~lk 372 (587)
T COG0369 301 KSHFEFTS-AP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDLLPPLK 372 (587)
T ss_pred HHheeccc-ch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHhCccCC
Confidence 99999999 88 999999999999999999999887 566777765 99999999999999999999999999999
Q ss_pred ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC-CCCCC-CCCCCEEEEeCCC
Q 006868 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGPGT 482 (628)
Q Consensus 405 ~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~lp-~~~~piimIa~Gt 482 (628)
||+|||||+|..++++++|||++|+|.+. ++.+.|+||+||+++.+ .|+.|.++++.+ +|++| ++.+||||||+||
T Consensus 373 PR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~-~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GT 450 (587)
T COG0369 373 PRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLE-EGDTIPVFVQPNKNFRLPEDPETPIIMIGPGT 450 (587)
T ss_pred CeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhc-CCCeEEEEeccCCccccCCCCCCceEEEcCCC
Confidence 99999999998899999999999999998 55899999999987643 299999999988 89999 7779999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHH
Q 006868 483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKML 561 (628)
Q Consensus 483 GIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~ 561 (628)
||||||||+|+|..++.+ +++|||||||+.+ ||||++||++|.+. |.++ ++..|||||+.+|.||||+|+
T Consensus 451 GIAPFRafvq~r~~~~~~---gk~wLfFG~R~~~~DfLY~~Ewe~~~~~-G~~~-----~l~~AfSRdq~~KiYVQd~lr 521 (587)
T COG0369 451 GIAPFRAFVQERAANGAE---GKNWLFFGCRHFTEDFLYQEEWEEYLKD-GVLT-----RLDLAFSRDQEEKIYVQDRLR 521 (587)
T ss_pred CchhHHHHHHHHHhcccc---CceEEEecCCCCccchhhHHHHHHHHhc-CCce-----eEEEEEeecCCCCccHHHHHH
Confidence 999999999999998876 7999999999988 99999999999999 9887 999999999999999999999
Q ss_pred HcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 562 EQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 562 ~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
+++++||+++.++|+|||||+++.|+++|.++|.+|+.++++++.|+|.+++++|++++||++|||
T Consensus 522 e~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy 587 (587)
T COG0369 522 EQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY 587 (587)
T ss_pred HhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence 999999999999999999998889999999999999999999999999999999999999999999
No 5
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=7e-100 Score=834.10 Aligned_cols=587 Identities=36% Similarity=0.615 Sum_probs=488.1
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC-CCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l-~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~ 83 (628)
...+++|+|+|+||++|.+|.++++.+ .-++...+.+.+++...+ ...++++++.+|||+|++|+|+..|.+++...
T Consensus 45 ~~~~~~v~~~s~tgtae~~a~~l~~~~--~~~~~~~~~~~d~~~~~l~~~~~l~~~~~at~g~gd~~dn~~~f~~~l~~~ 122 (645)
T KOG1158|consen 45 KRVKATVLYGSQTGTAEDFAKRLSEIF--ARFELKVLKVADYDLYALEDHEKLLVVVLATYGEGDPPDNAEAFYQSLTEL 122 (645)
T ss_pred cceeEEEEeccCCCCHHHHHHHHHHHh--hhccccceeecchhhcccccccceeeeeeehhcCCCCCccHHHHHHHHhhc
Confidence 457889999999999999999999999 445666666666665556 56679999999999999999999999999877
Q ss_pred cCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCC
Q 006868 84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSF 163 (628)
Q Consensus 84 ~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~ 163 (628)
+.+. ...++|+|||+|++.|++||++++.++++|+++|++++...+.+|+.. +.+++|..|++.+|+.+.+.+.
T Consensus 123 ~~~~--~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~--~~e~~f~~w~~~~~~~~~~~f~-- 196 (645)
T KOG1158|consen 123 KVLP--SSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDA--GLEEDFRTWKKPLLPELCETFS-- 196 (645)
T ss_pred cCch--hhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccc--cchhHHHHHHHHHhHhhhheee--
Confidence 6544 455899999999999999999999999999999999999999999985 5999999999999999988876
Q ss_pred CCCCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCC
Q 006868 164 FPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTK 242 (628)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~ 242 (628)
+.+.. ..+....+.. ........... . .. .......+..+........+|. .++.+..|..
T Consensus 197 ~~~~~--~~~~~~~~~~--~~~~~~~~~~~----~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 258 (645)
T KOG1158|consen 197 LEEDE--ATKEDETIRQ--YRTWTPNDPPF----V--PQ--------AFPPELLNLLSSTPFDKVFPFPALVVVNLALST 258 (645)
T ss_pred ecccc--ccCCcccccc--cccCcCccccc----c--cc--------ccCccccccccCCcchhcccchhhhhHHhhccC
Confidence 22100 0000000000 00000000000 0 00 0000000000000001112333 5666777776
Q ss_pred CCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEE--eecCccCCCCcccCCCccccccH
Q 006868 243 SGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITV--QHKEMKNYLPDIHKNTTEVPIKL 320 (628)
Q Consensus 243 ~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~--~~~~~~~~~p~~~~~~~~~~~tl 320 (628)
+.+.+.++|++++..++++.|+||||++|+|.|+.+.|++++++|+++++..+.+ .....+...|.....+++.|+|+
T Consensus 259 ~~~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~ 338 (645)
T KOG1158|consen 259 PSSDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTL 338 (645)
T ss_pred CCCceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcH
Confidence 7788999999999997899999999999999999999999999999998744433 33321111222234557799999
Q ss_pred HHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhc
Q 006868 321 RTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLV 400 (628)
Q Consensus 321 ~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~l 400 (628)
+++|++|+||++ +|++.+++.||.||+|+.||++|+.|++++|..+|.+++....++++|||++||+|++|+++|+..+
T Consensus 339 ~~~l~~~ldi~~-~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~l 417 (645)
T KOG1158|consen 339 RTALTHYLDITG-PPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLELL 417 (645)
T ss_pred HHHHHHhccccC-CCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHhC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceeeccCCCCCCCeEEEEEEEEEeecCCC-CcccccccHHhhCcCCCCCceEE--EEeecCCCCCC-CCCCCEE
Q 006868 401 PPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP--AWFQKGSLPRP-PPSVPLI 476 (628)
Q Consensus 401 p~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~--i~~~~g~F~lp-~~~~pii 476 (628)
|.++||+|||||||..++++++++|.+|+|.++.+ +.|.|+||+||+++++ |+.+. +......|++| ++.+|+|
T Consensus 418 p~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~--~~~~~~~~~~~~s~frlp~dp~~PiI 495 (645)
T KOG1158|consen 418 PRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP--GEKVPNPVPVGKSMFRLPSDPSTPII 495 (645)
T ss_pred ccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC--ccccCcceeecccceecCCCCCCcEE
Confidence 99999999999999999999999999999999875 6778999999999999 99998 55567789999 8999999
Q ss_pred EEeCCCChHHHHHHHHHHHHhcCCC---CCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCC-C
Q 006868 477 LIGPGTGCAPFRGFVEERAIQSSSG---PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ-P 551 (628)
Q Consensus 477 mIa~GtGIAPfrs~l~~~~~~~~~~---~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~-~ 551 (628)
|||+||||||||||+|+|......+ ..+ +|||||||+.+ |+||++||+++.+. |.++ ++.+||||++ .
T Consensus 496 MIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~-~~l~-----~l~~A~SReq~~ 568 (645)
T KOG1158|consen 496 MIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA-GILT-----RLDVAFSREQTP 568 (645)
T ss_pred EEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc-Ccch-----hheeeeeccCCC
Confidence 9999999999999999999876543 234 99999999999 99999999999887 8887 9999999998 7
Q ss_pred CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 552 QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 552 ~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
+|.||||+|++.+++||++|.+ +++|||||++++|+++|.++|.+|+++.++++.++|++++++|++++||++|||
T Consensus 569 ~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw 645 (645)
T KOG1158|consen 569 KKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW 645 (645)
T ss_pred CceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence 8999999999999999999966 999999999966999999999999999999999999999999999999999999
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1e-77 Score=651.06 Aligned_cols=383 Identities=37% Similarity=0.691 Sum_probs=349.8
Q ss_pred cee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCC-CCceEEEeecCccCCCC
Q 006868 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD-PDALITVQHKEMKNYLP 307 (628)
Q Consensus 230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~-~~~~v~~~~~~~~~~~p 307 (628)
+|. +|++|++||++ ++++++||+||+++++++|+|||+|+|+|+|+++.|+++|++||++ +++.+++++.......
T Consensus 5 ~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~~~~- 82 (416)
T cd06204 5 PFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEPASK- 82 (416)
T ss_pred CeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCccccc-
Confidence 445 89999999998 9999999999998778999999999999999999999999999999 8999988754421111
Q ss_pred cccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC
Q 006868 308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 387 (628)
Q Consensus 308 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~ 387 (628)
..+++.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++ +|.++|.+|+.+.++|++|+|++||
T Consensus 83 ---~~~~~~~~tl~~~l~~~~Dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~f~ 157 (416)
T cd06204 83 ---KVPFPCPTTYRTALRHYLDITA-PVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFP 157 (416)
T ss_pred ---CCCCCCCccHHHHHHhhEEeCC-CCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHhCc
Confidence 1236689999999999999999 9999999999999999999999999999 9999999999999999999999999
Q ss_pred CCC---CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcC--------------
Q 006868 388 SVQ---MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-------------- 450 (628)
Q Consensus 388 ~~~---~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-------------- 450 (628)
+++ +|+++|++.+|+++||+|||||+|..+++.++|||++++|.++.++.+.|+||+||+++.
T Consensus 158 s~~~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~ 237 (416)
T cd06204 158 SAKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYL 237 (416)
T ss_pred ccCCCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccccccc
Confidence 999 999999999999999999999999778899999999999999888889999999999776
Q ss_pred -------CCCCceEEEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCC-Ccccc
Q 006868 451 -------PQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLY 520 (628)
Q Consensus 451 -------~~~G~~v~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly 520 (628)
+ |+.|.+.++.|.|.+| +..+|+||||+||||||||||++++......+ ..++++||||||++ .|++|
T Consensus 238 ~~~~~~~~--g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly 315 (416)
T cd06204 238 SGPRKKGG--GSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIY 315 (416)
T ss_pred ccccccCC--CCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccch
Confidence 7 9999999999999999 77799999999999999999999986542211 24799999999999 49999
Q ss_pred HHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 006868 521 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 600 (628)
Q Consensus 521 ~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~ 600 (628)
++||++|.+..+.+ +++++|||++..++||||+|.++.+.+++++.+++.||||||+..|+++|+++|.+|+++
T Consensus 316 ~~el~~~~~~~~~~------~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~ 389 (416)
T cd06204 316 KDELEEYAKLGGLL------ELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAE 389 (416)
T ss_pred HHHHHHHHHcCCce------EEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHH
Confidence 99999999873445 899999998878999999999999999998888899999999844999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 601 EGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 601 ~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
++++++++|++|+++|+++|||++|||
T Consensus 390 ~~~~~~~~A~~~l~~l~~~gRy~~dvw 416 (416)
T cd06204 390 QGGMTETEAEEYVKKLKTRGRYQEDVW 416 (416)
T ss_pred hCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence 999999999999999999999999999
No 7
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=2.9e-77 Score=644.39 Aligned_cols=375 Identities=32% Similarity=0.603 Sum_probs=340.6
Q ss_pred eeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCC--CCceEEEeec--Ccc--CCCC
Q 006868 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLD--PDALITVQHK--EMK--NYLP 307 (628)
Q Consensus 234 v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~--~~~~v~~~~~--~~~--~~~p 307 (628)
|++|++||+++++++++||+|++.++++.|+|||+|+|+|+|+++.|+++|++||++ ++..++++.. ... ..+|
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKKNAKVP 81 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCccccccccC
Confidence 678999999999999999999998778999999999999999999999999999999 7788888632 111 1233
Q ss_pred cccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC
Q 006868 308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 387 (628)
Q Consensus 308 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~ 387 (628)
.+++.++|++++|++||||++ +|+++||+.||+||+|+.+|++|.+|++.++.++|.+|+.+.++|++|+|++||
T Consensus 82 ----~~~p~~~tl~~ll~~~~Dl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~ 156 (398)
T cd06203 82 ----VHIPKVVTLRTILTWCLDIRA-IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFP 156 (398)
T ss_pred ----CCCCCCccHHHHHHHhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCC
Confidence 235678999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcC-----CCCCceEEEEee
Q 006868 388 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-----PQQGIYIPAWFQ 462 (628)
Q Consensus 388 ~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-----~~~G~~v~i~~~ 462 (628)
++++|++++++.+|+++||+|||||+|..+++.++|+|+++.+.+ .|+||+||+++. + |++|.+.++
T Consensus 157 s~~~pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~--G~~v~i~~~ 228 (398)
T cd06203 157 SCRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSH--GVKVPFYLR 228 (398)
T ss_pred CCCCCHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCC--CCEEEEEEe
Confidence 999999999999999999999999999666799999999987654 699999999887 8 999999995
Q ss_pred -cCCCCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcC---CCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcc
Q 006868 463 -KGSLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSS---SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFS 535 (628)
Q Consensus 463 -~g~F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~---~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~ 535 (628)
.|.|.+| + ..+|+||||+||||||||||+|++..... .+..++++||||||+++ |++|++||++|.+. |.+.
T Consensus 229 ~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~-~~~~ 307 (398)
T cd06203 229 SSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEE-GILT 307 (398)
T ss_pred cCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHc-CCCc
Confidence 5789998 5 67999999999999999999999876321 11348999999999995 99999999999998 7775
Q ss_pred cCCCCcEEEEEecCCC---CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHH
Q 006868 536 EAKGGGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAAN 611 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~ 611 (628)
++++||||++. .++||||+|.++.+.+++++. +++.|||||++..|+++|+++|.+|+++++++++++|++
T Consensus 308 -----~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~ 382 (398)
T cd06203 308 -----RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKK 382 (398)
T ss_pred -----eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 79999999887 589999999999999999885 589999999976899999999999999999999999999
Q ss_pred HHHHHHHcCCEEEeec
Q 006868 612 WLKALQRAGRYHVEAW 627 (628)
Q Consensus 612 ~l~~l~~~~Ry~~dvw 627 (628)
|+++|+++|||++|+|
T Consensus 383 ~~~~l~~~gRy~~dvw 398 (398)
T cd06203 383 LLARLRKEDRYLEDVW 398 (398)
T ss_pred HHHHHHHcCCeeeecC
Confidence 9999999999999999
No 8
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=7.3e-77 Score=639.32 Aligned_cols=377 Identities=43% Similarity=0.731 Sum_probs=345.9
Q ss_pred eeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCC
Q 006868 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNT 313 (628)
Q Consensus 234 v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~ 313 (628)
|++|++||+++++++|+||+|+++++++.|+|||+|+|+|+|+++.|+++|++||+++++.+++++...... ..+
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~-----~~~ 76 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQQRG-----KPP 76 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEeccccccc-----CCC
Confidence 678999999999999999999998778999999999999999999999999999999999998875431111 123
Q ss_pred ccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCH
Q 006868 314 TEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPI 393 (628)
Q Consensus 314 ~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~ 393 (628)
++.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|.+|++.++.+.|.+| ++++++|+|++||++++|+
T Consensus 77 ~~~~~t~~~ll~~~~dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~ 152 (382)
T cd06207 77 FPEPISVRQLLKKFLDIFG-KPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL 152 (382)
T ss_pred CCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence 6789999999999999999 99999999999999999999999999999999999888 7999999999999999999
Q ss_pred HHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC-CCC
Q 006868 394 DWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPS 472 (628)
Q Consensus 394 ~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~~ 472 (628)
+.|++.+|+++||+|||||+|..+++.++|+|+++.|.++.++.+.|+||+||+++++ |+.|.+.+|.|.|.+| +..
T Consensus 153 ~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~p~g~F~lp~~~~ 230 (382)
T cd06207 153 EQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV--GQRVTVFIKKSSFKLPKDPK 230 (382)
T ss_pred HHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCC--CCEEEEEEECCcccCCCCCC
Confidence 9999999999999999999996668999999999999998888889999999999999 9999999999999999 778
Q ss_pred CCEEEEeCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcEEEEEecCC
Q 006868 473 VPLILIGPGTGCAPFRGFVEERAIQSSS-GPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ 550 (628)
Q Consensus 473 ~piimIa~GtGIAPfrs~l~~~~~~~~~-~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~ 550 (628)
+|+||||+||||||||||++++...... ...++++||||||++ .|++|++||++|.+. +.+. ++++||||++
T Consensus 231 ~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~~a~Srd~ 304 (382)
T cd06207 231 KPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKS-GVLT-----TLGTAFSRDQ 304 (382)
T ss_pred CCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhC-CCCc-----eEEEEecCCC
Confidence 9999999999999999999998754211 124899999999999 599999999999988 6654 8999999998
Q ss_pred CCccchhhhHHHcHHHHHHHHhCC-CEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 551 PQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 551 ~~k~yVqd~l~~~~~~v~~~l~~~-~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
..++||||++.++.+.+++++.++ +.||||||+..|+++|+++|.+++.+++++++++|++|+++|+++|||++|||
T Consensus 305 ~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw 382 (382)
T cd06207 305 PKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEAW 382 (382)
T ss_pred CCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence 889999999999999999988775 49999999833999999999999999999999999999999999999999999
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=1.5e-76 Score=639.96 Aligned_cols=384 Identities=33% Similarity=0.587 Sum_probs=340.7
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecC-CCCccCCCCEEEEecCCCHHHHHHHHHHcCCCC--CceEEEeecCccC---CC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDP--DALITVQHKEMKN---YL 306 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~--~~~v~~~~~~~~~---~~ 306 (628)
+|++|++||++++.|+++||+||+++ +++.|+|||+|+|+|+|+++.|+++|++|++.+ +..+.++...... +.
T Consensus 1 ~~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T cd06202 1 KVISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGI 80 (406)
T ss_pred CcceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCccccc
Confidence 47789999999999999999999985 689999999999999999999999999999854 5677775322211 00
Q ss_pred Cc-ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhh
Q 006868 307 PD-IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLED 385 (628)
Q Consensus 307 p~-~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~ 385 (628)
.. ...+.++.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++ +.++|.+|+.+++++++|+|++
T Consensus 81 ~~~~~~~~~~~~~tl~~ll~~~lDl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~ 157 (406)
T cd06202 81 IKTWTPHERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEE 157 (406)
T ss_pred cccccccCCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHh
Confidence 00 001234569999999999999999 9999999999999999999999999997 7889999999999999999999
Q ss_pred CCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCC--CCcccccccHHhhCcCCCCCceEEEEeec
Q 006868 386 FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY--KRKRTGLCSVWLAGLDPQQGIYIPAWFQK 463 (628)
Q Consensus 386 f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~--~~~~~G~~S~~L~~l~~~~G~~v~i~~~~ 463 (628)
||++++|+++|++.+|+++||+|||||+|..+++.++|+|+++.|.++. ++.+.|+||+||+++++ |+.|.+.++.
T Consensus 158 f~s~~~~~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~~~ 235 (406)
T cd06202 158 FPSLQVPASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRS 235 (406)
T ss_pred CCcCCCCHHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCC--CCEEEEEEee
Confidence 9999999999999999999999999999976789999999999998754 33578999999999999 9999999875
Q ss_pred -CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhc-----CCCCCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcc
Q 006868 464 -GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQS-----SSGPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFS 535 (628)
Q Consensus 464 -g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~-----~~~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~ 535 (628)
|.|.+| +..+|+||||+||||||||||||+|.... .....++++||||||++ +|++|++||++|.+. |.+.
T Consensus 236 ~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~-~~~~ 314 (406)
T cd06202 236 APSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK-GVLT 314 (406)
T ss_pred CCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHc-CCCc
Confidence 489999 77899999999999999999999986431 11134899999999999 599999999999998 7775
Q ss_pred cCCCCcEEEEEecCCC-CccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006868 536 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL 613 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l 613 (628)
++++||||++. .++||||.|.++.+.+++++ .+++.|||||++ .|+++|.++|.+|++++++++.++|++|+
T Consensus 315 -----~~~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~-~M~~~V~~~L~~i~~~~~~~s~~~A~~~~ 388 (406)
T cd06202 315 -----EVYTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFI 388 (406)
T ss_pred -----eEEEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC-chHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 79999999875 58999999999999999998 459999999998 89999999999999999999999999999
Q ss_pred HHHHHcCCEEEeecC
Q 006868 614 KALQRAGRYHVEAWS 628 (628)
Q Consensus 614 ~~l~~~~Ry~~dvws 628 (628)
++|+++|||++|||+
T Consensus 389 ~~l~~~gRy~~dvw~ 403 (406)
T cd06202 389 LKLRDENRYHEDIFG 403 (406)
T ss_pred HHHHHcCCeEEEecc
Confidence 999999999999996
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=1.7e-74 Score=621.34 Aligned_cols=373 Identities=31% Similarity=0.562 Sum_probs=338.7
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 312 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~ 312 (628)
+|++|++||+++++++|+||+|+++ +++.|+|||+|+|+|+|+++.|+++|++||+++++.|++.+......+|
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~-~~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~~~~~p----- 74 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLP-DGMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGSATGLP----- 74 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECC-CCCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCCCCCCC-----
Confidence 5789999999999999999999997 5899999999999999999999999999999999999887643322333
Q ss_pred CccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCC
Q 006868 313 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 392 (628)
Q Consensus 313 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p 392 (628)
++.|+|++++|++|+||++ +|++.||+.||+||+|+.+|++|..++ .++|.+++.++++|++|+|++||++++|
T Consensus 75 -~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 75 -LGTPISVSELLSSYVELSQ-PATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred -CCCCEEHHHHHHhhccccC-CCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 6689999999999999999 999999999999999999999999886 3578888888999999999999999999
Q ss_pred HHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCC-CcccccccHHhhCcCCCCCceEEEE--eecCCCCCC
Q 006868 393 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAW--FQKGSLPRP 469 (628)
Q Consensus 393 ~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~i~--~~~g~F~lp 469 (628)
++++++.+|+++||+|||||+|..+++.++|+|+++++.+..+ +.+.|+||+||+++++ |+.|.+. ++.|.|.+|
T Consensus 149 ~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~i~~p~g~F~l~ 226 (384)
T cd06206 149 LATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP--GDSIHVSVRPSHSAFRPP 226 (384)
T ss_pred HHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCC--CCeEEEEEecCCCccCCC
Confidence 9999999999999999999999666889999999999887654 5578999999999999 9999976 456899998
Q ss_pred -CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 470 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 470 -~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
+..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|++||++|.+. +.+ ++++++
T Consensus 227 ~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~~------~l~~a~ 299 (384)
T cd06206 227 SDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA-GVV------SVRRAY 299 (384)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHC-CCe------EEEEEe
Confidence 67899999999999999999999987642111 23789999999999 599999999999987 888 899999
Q ss_pred ecCCCC-ccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Q 006868 547 SRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG----EASRDSAANWLKALQRAGR 621 (628)
Q Consensus 547 Sr~~~~-k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~----~~~~~~a~~~l~~l~~~~R 621 (628)
||++.. ++|||+.|.++.+.+++++.+++.||||||+ .|+++|.++|.+++.+++ +++.++|++|+++|+++||
T Consensus 300 Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~gr 378 (384)
T cd06206 300 SRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDG-RMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNKGR 378 (384)
T ss_pred cccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCC-chHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHcCC
Confidence 998764 8999999999999999988889999999999 799999999999999999 9999999999999999999
Q ss_pred EEEeec
Q 006868 622 YHVEAW 627 (628)
Q Consensus 622 y~~dvw 627 (628)
|++|||
T Consensus 379 y~~dvw 384 (384)
T cd06206 379 YATDVF 384 (384)
T ss_pred eeeecC
Confidence 999999
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=3.4e-71 Score=590.04 Aligned_cols=354 Identities=33% Similarity=0.588 Sum_probs=320.8
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKN 312 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~ 312 (628)
+|++|++||+++++++++||+|+++++++.|+|||+|+|+|+|+++.|+++|++||+++++.+++ +
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~---------~----- 66 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST---------V----- 66 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------C-----
Confidence 47799999999999999999999997789999999999999999999999999999999987642 1
Q ss_pred CccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC--CCC
Q 006868 313 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQ 390 (628)
Q Consensus 313 ~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~--~~~ 390 (628)
++.++|++++|++|+||++ + .++.|+.||+++.++++|.. ++.++|.+ .++++|+|++|| +++
T Consensus 67 -~~~~~t~~~~l~~~~dl~~-~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 67 -GGGTLPLREALIKHYEITT-L----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCcccHHHHHHhhhhhcc-C----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 2378999999999999998 4 45568899999989888875 57777653 589999999999 999
Q ss_pred CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCc-CCCCCceEEEEeecC-CCCC
Q 006868 391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQKG-SLPR 468 (628)
Q Consensus 391 ~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~i~~~~g-~F~l 468 (628)
+|+++++..+|+++||+|||||+|..+++.++|+|++++|.+. ++.+.|+||+||+++ ++ |+.|.+++++| .|.+
T Consensus 132 ~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~--Gd~v~v~~~~~~~F~l 208 (360)
T cd06199 132 LTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKE--GDTVPVFVQPNPHFRL 208 (360)
T ss_pred CCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCC--CCEEEEEEecCCCcCC
Confidence 9999999999999999999999996668899999999999875 566889999999975 68 99999998765 7999
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
| +..+|+||||+||||||||||+|++...... ++++||||||+++ |++|++||++|.+. +.+. ++++||
T Consensus 209 p~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~D~~y~~el~~~~~~-~~~~-----~~~~a~ 279 (360)
T cd06199 209 PEDPDAPIIMVGPGTGIAPFRAFLQEREATGAK---GKNWLFFGERHFATDFLYQDELQQWLKD-GVLT-----RLDTAF 279 (360)
T ss_pred CCCCCCCEEEEecCcChHHHHHHHHHHHhccCC---CcEEEEEcCCCCccchhHHHHHHHHHHc-CCCe-----EEEEEE
Confidence 9 7789999999999999999999999875543 8999999999985 99999999999988 5543 899999
Q ss_pred ecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEee
Q 006868 547 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA 626 (628)
Q Consensus 547 Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dv 626 (628)
||++..++||||.|.++.+.+++++.++++||||||++.|+++|+++|.+|++++++++.++|++|+++|+++|||++||
T Consensus 280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv 359 (360)
T cd06199 280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV 359 (360)
T ss_pred ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence 99988889999999999999999888899999999987899999999999999999999999999999999999999999
Q ss_pred c
Q 006868 627 W 627 (628)
Q Consensus 627 w 627 (628)
|
T Consensus 360 w 360 (360)
T cd06199 360 Y 360 (360)
T ss_pred C
Confidence 9
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=1.1e-70 Score=603.13 Aligned_cols=360 Identities=33% Similarity=0.582 Sum_probs=322.5
Q ss_pred cccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCC
Q 006868 228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 306 (628)
Q Consensus 228 ~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~ 306 (628)
.++|. +|++|++||+++++++++||+||+++++++|+|||+|+|+|+|+++.|+++|++||++++..+
T Consensus 166 ~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~----------- 234 (530)
T PRK06214 166 DNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI----------- 234 (530)
T ss_pred CCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc-----------
Confidence 44566 999999999999999999999999977899999999999999999999999999999987432
Q ss_pred CcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhC
Q 006868 307 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF 386 (628)
Q Consensus 307 p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f 386 (628)
.++|++++|++|+||++ +| +.||+.|+.+++++. |++|+.|++.+..+.. ....+++|+|++|
T Consensus 235 ---------~~~tlr~~L~~~~Dl~~-~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vldvL~~f 297 (530)
T PRK06214 235 ---------GGKTLREALLEDVSLGP-AP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVLAALEKF 297 (530)
T ss_pred ---------CCccHHHHHHHheeccC-CC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHHHHHHhC
Confidence 46799999999999998 65 889999999998776 7787778763332221 1246899999999
Q ss_pred CCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC-
Q 006868 387 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG- 464 (628)
Q Consensus 387 ~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g- 464 (628)
|++++|++++++.+|+++||+|||||+|..++++++|+|++|+|.+ .++.+.|+||+||+ ++++ |+.|.++++.+
T Consensus 298 p~~~~~~~~lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~--Gd~V~v~i~~~~ 374 (530)
T PRK06214 298 PGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAP--GTRVRVYVQKAH 374 (530)
T ss_pred CCCCCCHHHHHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCC--CCEEEEEecCCC
Confidence 9999999999999999999999999999667899999999999985 46778999999997 7999 99999988543
Q ss_pred CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcE
Q 006868 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGF 542 (628)
Q Consensus 465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~ 542 (628)
.|.+| +..+|+||||+||||||||||+|+|...... +++|||||||+.+ |++|++||++|.+. +.++ ++
T Consensus 375 gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~~---g~~~LffG~R~~~~D~ly~dEL~~l~~~-g~l~-----~l 445 (530)
T PRK06214 375 GFALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAP---GRNWLFFGHQRSATDFFYEDELNGLKAA-GVLT-----RL 445 (530)
T ss_pred CCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcCC---CCeEEEEEecCChhhhHHHHHHHHHHHh-CCce-----EE
Confidence 49999 7778999999999999999999998765543 8999999998866 99999999999998 7775 79
Q ss_pred EEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCE
Q 006868 543 YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 622 (628)
Q Consensus 543 ~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry 622 (628)
+++|||++..++||||+|.++.+++++++.++++||||||++.|+++|+++|.+|+++++++++++|++|+++|+++|||
T Consensus 446 ~~afSRd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY 525 (530)
T PRK06214 446 SLAWSRDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRY 525 (530)
T ss_pred EEEEecCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCE
Confidence 99999998889999999999999999999889999999997679999999999999999999999999999999999999
Q ss_pred EEeec
Q 006868 623 HVEAW 627 (628)
Q Consensus 623 ~~dvw 627 (628)
++|||
T Consensus 526 ~~Dvw 530 (530)
T PRK06214 526 QADVY 530 (530)
T ss_pred EEecC
Confidence 99999
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=4.5e-46 Score=370.42 Aligned_cols=212 Identities=45% Similarity=0.759 Sum_probs=179.5
Q ss_pred ccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCC
Q 006868 229 VCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLP 307 (628)
Q Consensus 229 ~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p 307 (628)
++|. +|++|++||+++++++++||+|++++++++|+|||+|+|+|+|+++.|++++++||+++++.|+++.......
T Consensus 7 ~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~~~~-- 84 (219)
T PF00667_consen 7 NPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQNNS-- 84 (219)
T ss_dssp B-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESSTTSS--
T ss_pred CCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEecccccc--
Confidence 3455 9999999999999999999999999889999999999999999999999999999999999999987664211
Q ss_pred cccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC
Q 006868 308 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 387 (628)
Q Consensus 308 ~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~ 387 (628)
...+++.++||+++|++|+||++ +|++.||+.||.||+|+.+|++|++|++.+|.++|.+|+.+.+++++|+|++||
T Consensus 85 --~~~~~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fp 161 (219)
T PF00667_consen 85 --VKPPFPSPITLRDLLTHYLDITS-PPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFP 161 (219)
T ss_dssp --CCSSSSSSEEHHHHHHHTB-TSS-B--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHST
T ss_pred --cccccccceeeeeeeeeeeeccc-ccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCc
Confidence 12337799999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHH
Q 006868 388 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 445 (628)
Q Consensus 388 ~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~ 445 (628)
++++|+++|++.+|+++||+|||||||..++++++|||++|+|.+..++.+.|+||+|
T Consensus 162 s~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 162 SCKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp TBTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred ccCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 9999999999999999999999999998899999999999999999899999999998
No 14
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=4.2e-41 Score=355.40 Aligned_cols=269 Identities=25% Similarity=0.425 Sum_probs=227.5
Q ss_pred CCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc
Q 006868 225 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK 303 (628)
Q Consensus 225 ~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~ 303 (628)
+...++|. +|+.|.+|+.++...+++||+|+.+ ..+.|+||.+++|.|+...
T Consensus 85 ~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~-~~~~f~~GQfv~I~~~g~~-------------------------- 137 (367)
T PLN03115 85 FRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTE-GEIPYREGQSIGVIPDGID-------------------------- 137 (367)
T ss_pred eccCCCeEEEEEeecccccCCCCCceEEEEEcCC-CCCCcCCCCEEEEEcCCcC--------------------------
Confidence 44556777 9999999999988899999999976 5789999999999875100
Q ss_pred CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHh
Q 006868 304 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL 383 (628)
Q Consensus 304 ~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l 383 (628)
..+
T Consensus 138 --------------------------~~g--------------------------------------------------- 140 (367)
T PLN03115 138 --------------------------KNG--------------------------------------------------- 140 (367)
T ss_pred --------------------------CCC---------------------------------------------------
Confidence 001
Q ss_pred hhCCCCCCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE
Q 006868 384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW 460 (628)
Q Consensus 384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~ 460 (628)
.+..+|+|||||+|.. +++.++|+|+.+.|.+..+....|+||+||+++++ ||.|.+.
T Consensus 141 -----------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~--Gd~V~v~ 201 (367)
T PLN03115 141 -----------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GAEVKIT 201 (367)
T ss_pred -----------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCC--cCEEEEE
Confidence 0236799999999842 35789999999989876677789999999999999 9999999
Q ss_pred eecCCCC-CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCC--CCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-Ccc
Q 006868 461 FQKGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS 535 (628)
Q Consensus 461 ~~~g~F~-lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~--~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~ 535 (628)
+|.|.|. +| +..+|+||||+|||||||+||++++...... ...++++||||||+.+|++|.+||++|.+.++ ++
T Consensus 202 GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f- 280 (367)
T PLN03115 202 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENF- 280 (367)
T ss_pred eecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCE-
Confidence 9999764 56 6678999999999999999999987543321 11378999999999999999999999988755 67
Q ss_pred cCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHH
Q 006868 536 EAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 610 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~ 610 (628)
+++.++||++. .++||||+|.++.+++++++.. +++|||||++ +|.++|.++|.+++...| + +++
T Consensus 281 -----~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~-~M~~~V~~~l~~l~~~~g-~---~~~ 350 (367)
T PLN03115 281 -----RLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAKDG-I---DWF 350 (367)
T ss_pred -----EEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCH-HHHHHHHHHHHHHHHHhC-c---cHH
Confidence 89999999865 5789999999999999988854 7899999997 999999999999998875 3 578
Q ss_pred HHHHHHHHcCCEEEeec
Q 006868 611 NWLKALQRAGRYHVEAW 627 (628)
Q Consensus 611 ~~l~~l~~~~Ry~~dvw 627 (628)
+++++|+++|||+.|+|
T Consensus 351 ~~~~~lk~~~r~~~e~y 367 (367)
T PLN03115 351 EYKKQLKKAEQWNVEVY 367 (367)
T ss_pred HHHHHHHHCCCeEEecC
Confidence 99999999999999998
No 15
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=1.1e-38 Score=326.82 Aligned_cols=215 Identities=43% Similarity=0.751 Sum_probs=190.4
Q ss_pred cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC-CCCCC-CCCCCEEEEeCC
Q 006868 404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP-PPSVPLILIGPG 481 (628)
Q Consensus 404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~lp-~~~~piimIa~G 481 (628)
.+|+|||||+|...++.++|+|+.+.+.......+.|.+|+||+++++ |+.|.+.+|.| .|.++ +...|+||||+|
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~--Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgG 124 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL--GAKVTVFIRPAPSFRLPKDPTTPIIMVGPG 124 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC--CCEEEEEEecCCcccCCCCCCCCEEEEecC
Confidence 568999999984446899999999888766566678999999999999 99999999999 89998 667899999999
Q ss_pred CChHHHHHHHHHHHHhcCC-CCCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCC-ccchhh
Q 006868 482 TGCAPFRGFVEERAIQSSS-GPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-KVYVQH 558 (628)
Q Consensus 482 tGIAPfrs~l~~~~~~~~~-~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~-k~yVqd 558 (628)
||||||+++++++...... ...++++||||+|+. +|++|+++|++|.+...++ ++++++||++.. ++||++
T Consensus 125 tGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~------~~~~~~S~~~~~~~~~v~~ 198 (267)
T cd06182 125 TGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALT------RLDVAFSREQAEPKVYVQD 198 (267)
T ss_pred ccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcc------eEEEEEccCCCCCceehHH
Confidence 9999999999999863100 013789999999999 7999999999999874455 899999997764 789999
Q ss_pred hHHHcHHHHHHHHhCCCEEEEeCCCCC-CHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 559 KMLEQSQRIWNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 559 ~l~~~~~~v~~~l~~~~~iyvCG~~~~-M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
.+.+..+.+++++.+++.||||||+ . |.+.|.++|.++++++++++.++|++++++|++.|||++|+|
T Consensus 199 ~l~~~~~~l~~~l~~~~~vyvCGp~-~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (267)
T cd06182 199 KLKEHAEELRRLLNEGAHIYVCGDA-KSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267 (267)
T ss_pred HHHHhHHHHHHHHhcCCEEEEECCc-ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence 9988888888878777899999999 7 999999999999999999999999999999999999999999
No 16
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=2.8e-35 Score=305.07 Aligned_cols=188 Identities=32% Similarity=0.545 Sum_probs=162.6
Q ss_pred ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEe-ecCCCCCCCCCCCEEEEeCCCC
Q 006868 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF-QKGSLPRPPPSVPLILIGPGTG 483 (628)
Q Consensus 405 ~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~-~~g~F~lp~~~~piimIa~GtG 483 (628)
+|+|||+|+| .++.++|+|+. .+.|.+|+||+++++ |++|.+.+ +.|.|.+++..+|+||||+|||
T Consensus 100 ~R~YSias~p--~~g~l~l~Vk~---------~~~G~~S~~L~~l~~--Gd~v~v~~~~~g~F~~~~~~~~lvlIAgGtG 166 (289)
T cd06201 100 PRFYSLASSS--SDGFLEICVRK---------HPGGLCSGYLHGLKP--GDTIKAFIRPNPSFRPAKGAAPVILIGAGTG 166 (289)
T ss_pred CceEecCCCC--CCCeEEEEEEe---------CCCccchhhHhhCCC--cCEEEEEeccCCCccCCCCCCCEEEEecCcC
Confidence 6999999998 45789999943 467999999999999 99999986 5678988755789999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHH
Q 006868 484 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE 562 (628)
Q Consensus 484 IAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~ 562 (628)
||||+++++++.. ..+++||||+|+++ |++|++||++|.+.+..+ +++.++||++ .++|||+.+..
T Consensus 167 IaP~~s~l~~~~~------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~------~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 167 IAPLAGFIRANAA------RRPMHLYWGGRDPASDFLYEDELDQYLADGRLT------QLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred HHHHHHHHHhhhc------cCCEEEEEEecCcccchHHHHHHHHHHHcCCCc------eEEEEECCCC-CcccchhHHHH
Confidence 9999999998631 16899999999996 999999999999884444 7888999875 38899999988
Q ss_pred cHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 563 QSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 563 ~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
..+.+..++.+++.||+|||+ .|.+.|.+.|.+|+.+++ + -+..|+++|||.+|+|
T Consensus 234 ~~~~l~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~-~-------~~~~~~~~g~~~~d~y 289 (289)
T cd06201 234 DAERLRRLIEDGAQIMVCGSR-AMAQGVAAVLEEILAPQP-L-------SLDELKLQGRYAEDVY 289 (289)
T ss_pred hHHHHHHHHHCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-c-------CHHHHHHCCCEEeecC
Confidence 877777777788999999998 999999999999998664 2 3788999999999998
No 17
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=4e-35 Score=303.88 Aligned_cols=210 Identities=30% Similarity=0.497 Sum_probs=177.6
Q ss_pred cccceeeccCCCC---CCCeEEEEEEEEEeecCCC-CcccccccHHhhCcCCCCCceEEEEeecCCCCC-C-CCCCCEEE
Q 006868 404 KTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR-P-PPSVPLIL 477 (628)
Q Consensus 404 ~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~l-p-~~~~piim 477 (628)
.+|+|||||+|.. +++.++|+|+.+.+.++.. ..+.|.+|+||+++++ |++|.+.+|.|.|.+ | +...|+||
T Consensus 63 ~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~~~~~~~~~~~vl 140 (286)
T cd06208 63 KLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKP--GDDVQITGPVGKTMLLPEDPNATLIM 140 (286)
T ss_pred CceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCC--CCEEEEEeecCCcccCCCCCCCCEEE
Confidence 5799999999843 2479999999987755432 4556999999999999 999999999998754 4 45679999
Q ss_pred EeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcEEEEEecCCC---
Q 006868 478 IGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP--- 551 (628)
Q Consensus 478 Ia~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~--- 551 (628)
||+|||||||+||++++..... ....++++||||+|+++|++|.++|+++.+.++ ++ ++++++||++.
T Consensus 141 IagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~------~~~~~~sr~~~~~~ 214 (286)
T cd06208 141 IATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNF------RIDYAFSREQKNAD 214 (286)
T ss_pred EecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcE------EEEEEEcCCCCCCC
Confidence 9999999999999999876521 012378999999999999999999999998755 56 89999999754
Q ss_pred -CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006868 552 -QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 552 -~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
.++||++.+.+..+.+++++.. ++.||+|||+ .|.++|.++|.+++. ...+|++++.+|+++|||+.|+|
T Consensus 215 g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~-~m~~~v~~~L~~~~~-----~~~~~~~~~~~~~~~gr~~~~~~ 286 (286)
T cd06208 215 GGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLK-GMEPGVDDALTSVAE-----GGLAWEEFWESLKKKGRWHVEVY 286 (286)
T ss_pred CCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCc-hHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHcCCeEEecC
Confidence 4789999999887788877765 5699999998 999999999999987 23579999999999999999999
No 18
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=5.2e-35 Score=316.09 Aligned_cols=267 Identities=26% Similarity=0.405 Sum_probs=217.3
Q ss_pred CCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc
Q 006868 225 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK 303 (628)
Q Consensus 225 ~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~ 303 (628)
+...+++. +|+++++||+++...+|++|+|+.++....|+||..+.|.++...
T Consensus 137 ~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~-------------------------- 190 (411)
T TIGR03224 137 YGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD-------------------------- 190 (411)
T ss_pred ccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC--------------------------
Confidence 44555666 999999999988888999999998754689999999999765100
Q ss_pred CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHh
Q 006868 304 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL 383 (628)
Q Consensus 304 ~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l 383 (628)
..+
T Consensus 191 --------------------------~~g--------------------------------------------------- 193 (411)
T TIGR03224 191 --------------------------ASG--------------------------------------------------- 193 (411)
T ss_pred --------------------------cCC---------------------------------------------------
Confidence 000
Q ss_pred hhCCCCCCCHHHHHHhcCCCcccceeeccCCCCC---CCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE
Q 006868 384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW 460 (628)
Q Consensus 384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~ 460 (628)
.+...|+|||+|+|..+ .+.++|+|+++.. +..+..+.|.+|+||+++++ ||+|.+.
T Consensus 194 -----------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~--Gd~v~v~ 253 (411)
T TIGR03224 194 -----------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKK--GDKVQVI 253 (411)
T ss_pred -----------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCC--cCEEEEE
Confidence 01257999999987221 2579999998864 33455678999999999999 9999999
Q ss_pred eecCC-CCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCC
Q 006868 461 FQKGS-LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAK 538 (628)
Q Consensus 461 ~~~g~-F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~ 538 (628)
+|.|. |.+| ...+|+||||+|||||||++|++++......+..++++||||+|+.+|++|.+||++|.+.+ +
T Consensus 254 GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~--~---- 327 (411)
T TIGR03224 254 GPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDF--I---- 327 (411)
T ss_pred eccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcC--c----
Confidence 99996 6677 55689999999999999999999987632111238999999999999999999999998652 4
Q ss_pred CCcEEEEEecCCC-CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006868 539 GGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL 616 (628)
Q Consensus 539 ~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l 616 (628)
++++++||++. .++||||.+.+..+.+++++.. ++.||+|||+ .|.++|.++|.++..+.+ +. ++.++++|
T Consensus 328 --~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp~-~M~~~v~~~L~~~~~~~~-~~---~~~~~~~l 400 (411)
T TIGR03224 328 --DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGLK-GMEEGVLDAFRDVCATNG-LS---WETLEPRL 400 (411)
T ss_pred --eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cC---HHHHHHHH
Confidence 67789999654 5899999999988888888764 6899999998 999999999999997653 44 46799999
Q ss_pred HHcCCEEEeec
Q 006868 617 QRAGRYHVEAW 627 (628)
Q Consensus 617 ~~~~Ry~~dvw 627 (628)
+++|||+.|+|
T Consensus 401 ~~~~r~~~e~~ 411 (411)
T TIGR03224 401 RAEGRLHLETY 411 (411)
T ss_pred HHCCCeEEecC
Confidence 99999999999
No 19
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=3.5e-35 Score=297.53 Aligned_cols=210 Identities=30% Similarity=0.407 Sum_probs=178.6
Q ss_pred CCCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC-CC
Q 006868 390 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG-SL 466 (628)
Q Consensus 390 ~~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g-~F 466 (628)
..|||++...++. ..+|+|||||+| .++.++|+|+.+... ..+.|.+|+||++ +++ |++|.+.+|.| .|
T Consensus 32 f~pGQ~v~l~~~~~~~~R~YSIas~p--~~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~--Gd~v~i~gp~gg~F 103 (245)
T cd06200 32 WQAGDIAEIGPRHPLPHREYSIASLP--ADGALELLVRQVRHA----DGGLGLGSGWLTRHAPI--GASVALRLRENPGF 103 (245)
T ss_pred ccCCcEEEecCCCCCCCcceEeccCC--CCCEEEEEEEEeccC----CCCCeeechhhhhCCCC--CCEEEEEecCCCcc
Confidence 3589998777763 678999999998 367899999776321 1245999999985 589 99999999865 78
Q ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 467 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 467 ~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
.+|+..+|+||||+|||||||+||++++..... ++++||||+|+.+ |++|.+||++|.+.++.+ +++++
T Consensus 104 ~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~----~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~------~~~~~ 173 (245)
T cd06200 104 HLPDDGRPLILIGNGTGLAGLRSHLRARARAGR----HRNWLLFGERQAAHDFFCREELEAWQAAGHLA------RLDLA 173 (245)
T ss_pred cCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCeEEEEecCCccccHhHHHHHHHHHHCCCcc------eEEEE
Confidence 887556899999999999999999999976542 6899999999986 999999999999884444 88999
Q ss_pred EecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEe
Q 006868 546 FSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE 625 (628)
Q Consensus 546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~d 625 (628)
+||++..++||++.+.++.+.+++++..++.||+|||++.|+++|+++|.+++++. .+++|+++|||++|
T Consensus 174 ~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~~~~~~----------~~~~~~~~~r~~~d 243 (245)
T cd06200 174 FSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGEE----------AVEALLAAGRYRRD 243 (245)
T ss_pred EccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHHHHHHH----------HHHHHHHCCCeEEe
Confidence 99988778999999998888877777678999999997789999999999999752 48899999999999
Q ss_pred ec
Q 006868 626 AW 627 (628)
Q Consensus 626 vw 627 (628)
+|
T Consensus 244 ~~ 245 (245)
T cd06200 244 VY 245 (245)
T ss_pred cC
Confidence 99
No 20
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=6.9e-35 Score=304.78 Aligned_cols=224 Identities=27% Similarity=0.418 Sum_probs=183.5
Q ss_pred CCHHHHHHhcCC---------CcccceeeccCCCCC---CCeEEEEEEEEEeecCCCC----cccccccHHhhCcCCCCC
Q 006868 391 MPIDWLVQLVPP---------LKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKR----KRTGLCSVWLAGLDPQQG 454 (628)
Q Consensus 391 ~p~~~l~~~lp~---------~~~R~YSIaSsp~~~---~~~i~l~V~~v~~~~~~~~----~~~G~~S~~L~~l~~~~G 454 (628)
.|||++...+|. ...|+|||||+|..+ +..++|+|+.+.|.++... .+.|.+|+||+++++ |
T Consensus 58 ~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--G 135 (307)
T PLN03116 58 WEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP--G 135 (307)
T ss_pred ecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCC--C
Confidence 477777665552 147999999998422 2389999998876654322 268999999999999 9
Q ss_pred ceEEEEeecCCCCC-C--CCCCCEEEEeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCCccccHHHHHHhHh
Q 006868 455 IYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHSL 529 (628)
Q Consensus 455 ~~v~i~~~~g~F~l-p--~~~~piimIa~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~d~ly~~el~~~~~ 529 (628)
+.|.+.+|.|.|.+ | +...|+||||+|||||||+||++++..... .+..++++||||+|+.+|++|.+||++|.+
T Consensus 136 d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~ 215 (307)
T PLN03116 136 DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLK 215 (307)
T ss_pred CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHH
Confidence 99999999999876 4 345799999999999999999998866432 112368999999999999999999999998
Q ss_pred cCC-CcccCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCC
Q 006868 530 NDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA 604 (628)
Q Consensus 530 ~~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~ 604 (628)
.++ ++ +++.++||++. .++||++.|.+..+.++..+..++.+|+|||+ .|++++.++|.+++...+ +
T Consensus 216 ~~~~~~------~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~-~mv~~v~~~L~~~~~~~g-~ 287 (307)
T PLN03116 216 DYPDNF------RYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK-GMMPGIQDTLKRVAEERG-E 287 (307)
T ss_pred hCCCcE------EEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCH-HHHHHHHHHHHHHHHHcC-c
Confidence 755 57 89999999764 36799999988777776666568899999998 999999999999987754 4
Q ss_pred CHHHHHHHHHHHHHcCCEEEeec
Q 006868 605 SRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 605 ~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
+|++.++.|+++|||++|+|
T Consensus 288 ---~~~~~~~~l~~~~r~~~~~~ 307 (307)
T PLN03116 288 ---SWEEKLSGLKKNKQWHVEVY 307 (307)
T ss_pred ---cHHHHHHHHHHcCceEEecC
Confidence 35689999999999999999
No 21
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=5.4e-33 Score=258.17 Aligned_cols=146 Identities=25% Similarity=0.312 Sum_probs=134.3
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
|++|.|+|||+|||||.+|++|++.+.+.|+.++++++.+ ++++..++.+||++||||+|++|+|++.|+++|+...
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~- 77 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--LDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQK- 77 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--HHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcC-
Confidence 5689999999999999999999999999999999888765 5688899999999999999999999999999997642
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
..++|++|+|||+||++|++||.+++.++++|+++||+++.+++++|+....++++.|++|.+.++..|
T Consensus 78 --~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 78 --PDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred --CCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 238999999999999999999999999999999999999999999999876668999999999988754
No 22
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=1.2e-32 Score=256.76 Aligned_cols=147 Identities=31% Similarity=0.413 Sum_probs=133.5
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
|++|.|+|||+|||||.+|++|++.|.+.|+.+.+.++++++...+.+++.+||++||||+|++|+|+.+|+++|++. .
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~-~ 79 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDT-A 79 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhc-C
Confidence 568999999999999999999999999999999999998876444456789999999999999999999999999754 1
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
..|+|++|+||||||++|++||.+++.++++|+++||+++.+++++|++++.++++.|++|+++ |..+
T Consensus 80 --~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 80 --GYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred --cccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 2489999999999999999999999999999999999999999999998877899999999999 5443
No 23
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=4.1e-32 Score=253.07 Aligned_cols=147 Identities=24% Similarity=0.295 Sum_probs=129.1
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCC--CeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE--DTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~--~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
|+|.|+|||+|||||.+|++|++.+.+.|+.+.+... .+..++..+ +.+||++||||+|++|+|+..|+++|.+..
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~--~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~ 78 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPR--ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQL 78 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCc--CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcC
Confidence 5799999999999999999999999999988766433 333344444 899999999999999999999999997642
Q ss_pred CcccccCCcEEEEEecCCcCh-hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868 85 LSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
+ ..|+|++||||||||++| ++||.+++.++++|+++||+++.+++++|++...++++++++|.+++|++|.
T Consensus 79 -~-~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 79 -P-AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred -c-cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 1 249999999999999999 7999999999999999999999999999998766699999999999998873
No 24
>PRK07308 flavodoxin; Validated
Probab=99.95 E-value=8e-27 Score=217.62 Aligned_cols=144 Identities=26% Similarity=0.298 Sum_probs=131.8
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
|+++.|+|+|+||||+++|+.|++.+.+.|+.+++.++++.+..++.+++.|||++||||+|.+|+++.+|+++|....
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~- 79 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLD- 79 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCC-
Confidence 5579999999999999999999999999999999999999888888899999999999999999999999999996653
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 154 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~ 154 (628)
++|++++|||+||+.|+|||.+++.++++|+++||+++.+...++..+++...+.+.+|.++|.+
T Consensus 80 ----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 144 (146)
T PRK07308 80 ----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEELAA 144 (146)
T ss_pred ----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999998766667777778877654
No 25
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.94 E-value=2.3e-26 Score=230.09 Aligned_cols=180 Identities=26% Similarity=0.363 Sum_probs=150.1
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l 468 (628)
..|||++...+|....|+|||+|.| ...+.++|+|+. ...|.+|++|. .+++ |++|.+.+|.|.|.+
T Consensus 26 ~~pGQ~v~l~~~~~~~r~ySi~s~~-~~~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 93 (224)
T cd06189 26 FLAGQYLDLLLDDGDKRPFSIASAP-HEDGEIELHIRA---------VPGGSFSDYVFEELKE--NGLVRIEGPLGDFFL 93 (224)
T ss_pred cCCCCEEEEEcCCCCceeeecccCC-CCCCeEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEecCCccEEe
Confidence 4699999888887789999999998 446889999944 35689999986 5999 999999999999988
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+ ....++||||+|||||||++++++....... .+++|+||+|+.+|++|++||+++.+.+.++ +++.++|
T Consensus 94 ~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 164 (224)
T cd06189 94 REDSDRPLILIAGGTGFAPIKSILEHLLAQGSK---RPIHLYWGARTEEDLYLDELLEAWAEAHPNF------TYVPVLS 164 (224)
T ss_pred ccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhccCHHHHHHHHHhCCCe------EEEEEeC
Confidence 7 5578999999999999999999999876533 7899999999999999999999999876777 8888899
Q ss_pred cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++++ .++||++.+.+.... ..+..+|+|||+ .|.+++.+.|.+
T Consensus 165 ~~~~~~~g~~g~v~~~l~~~~~~-----~~~~~v~vCGp~-~m~~~~~~~l~~ 211 (224)
T cd06189 165 EPEEGWQGRTGLVHEAVLEDFPD-----LSDFDVYACGSP-EMVYAARDDFVE 211 (224)
T ss_pred CCCcCCccccccHHHHHHhhccC-----ccccEEEEECCH-HHHHHHHHHHHH
Confidence 8543 467888876544211 136889999998 899988887765
No 26
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.94 E-value=8.1e-27 Score=216.73 Aligned_cols=138 Identities=46% Similarity=0.631 Sum_probs=123.9
Q ss_pred EEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC--ccCCCCCCeEEEEEecCCCCCCChhHH-HHHHHHHhcc--C
Q 006868 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVSTTGQGDTPDSMK-VFWRFLLQKS--L 85 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~--~~~l~~~~~vi~~~sT~g~G~~p~~~~-~F~~~L~~~~--~ 85 (628)
|+|+|+|||||++|+.|++.|.+.|++++++++++++ +.++..++.+||++||||+|++|+++. .|.+++.... .
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~~ 80 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDSPSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKEL 80 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHHHHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHGG
T ss_pred CEEECCchhHHHHHHHHHHHHHHcCCceeeechhhhhhhhhhhhhhceeeEeecccCCCcchhhhhhhhhhccccccccc
Confidence 8999999999999999999999999999999999999 448899999999999999999999998 5555554431 1
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHH
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPW 148 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W 148 (628)
....+++++|+|||+||+.|..||.+++.++++|+++|++++.|++++|+.+.++.++.|+.|
T Consensus 81 ~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 81 SKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp GGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 234589999999999999999999999999999999999999999999998755589999998
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.93 E-value=3.7e-26 Score=227.78 Aligned_cols=185 Identities=26% Similarity=0.394 Sum_probs=147.2
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F 466 (628)
..||||+...+|. ...|+|||+|+| ...+.++|+|+.+ ..|.+|+||.++++ |++|.+.+|.|.|
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~~~~~l~vk~~---------~~G~~s~~l~~~~~--G~~v~i~gP~G~~ 90 (223)
T cd00322 23 FKPGQYVDLHLPGDGRGLRRAYSIASSP-DEEGELELTVKIV---------PGGPFSAWLHDLKP--GDEVEVSGPGGDF 90 (223)
T ss_pred cCCCcEEEEEecCCCCcceeeeeccCCC-CCCCeEEEEEEEe---------CCCchhhHHhcCCC--CCEEEEECCCccc
Confidence 3699999888875 679999999998 3458899999553 46999999999999 9999999999998
Q ss_pred CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
.++ ....|+||||+|||||||+++++++...... ++++||||+|+.+|++|.+||+++.+.+.++ +++++
T Consensus 91 ~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 161 (223)
T cd00322 91 FLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPG---GEITLLYGARTPADLLFLDELEELAKEGPNF------RLVLA 161 (223)
T ss_pred ccCcccCCcEEEEecCCchhHHHHHHHHHHhhCCC---CcEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEE
Confidence 666 6678999999999999999999999876433 7899999999999999999999999875666 88999
Q ss_pred EecCCCCccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 546 FSRKQPQKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++|++....+.+..+........... ..++.+|+|||+ .|.+.+++.|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~-~m~~~~~~~L~~ 212 (223)
T cd00322 162 LSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPP-AMAKAVREALVS 212 (223)
T ss_pred ecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCH-HHHHHHHHHHHH
Confidence 99876543333322211111111111 237899999998 899998888765
No 28
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.93 E-value=2.4e-26 Score=233.40 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=144.0
Q ss_pred CCCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeec-CC
Q 006868 390 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~-g~ 465 (628)
..||||+...++ . ...|+|||+|+| ..+.++|+|+.+ +.|.+|+||+++++ |++|.+.+|. |.
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p--~~~~l~~~ik~~---------~~G~~S~~L~~l~~--Gd~v~i~gp~~g~ 97 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAP--DNPDLEFYLVTV---------PEGKLSPRLAALKP--GDEVQVVSEAAGF 97 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCC--CCCeEEEEEEEe---------CCCCcChHHHhCCC--CCEEEEecCCCcc
Confidence 358999877664 2 246999999998 345889998543 57999999999999 9999999987 56
Q ss_pred CCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcE
Q 006868 466 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF 542 (628)
Q Consensus 466 F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~ 542 (628)
|.++ . ...|+||||+|||||||+++++++...... .+++||||+|+.+|++|.+||++|.+.++ ++ ++
T Consensus 98 f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~------~v 168 (248)
T PRK10926 98 FVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERF---KNLVLVHAARYAADLSYLPLMQELEQRYEGKL------RI 168 (248)
T ss_pred eEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCC---CcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCE------EE
Confidence 6666 3 347999999999999999999998654433 78999999999999999999999988753 67 89
Q ss_pred EEEEecCCC---CccchhhhHHHc-HHHHHHH-H-hCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 543 YVAFSRKQP---QKVYVQHKMLEQ-SQRIWNL-L-LSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 543 ~~a~Sr~~~---~k~yVqd~l~~~-~~~v~~~-l-~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
..++||++. .+++|++.+.+. ....... + .+++.+|+|||+ .|.+++.+.|.+.
T Consensus 169 ~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~-~Mv~~~~~~l~~~ 228 (248)
T PRK10926 169 QTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNP-QMVRDTQQLLKET 228 (248)
T ss_pred EEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCH-HHHHHHHHHHHHh
Confidence 999998653 357888766432 1111111 1 236899999998 9999988777653
No 29
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=7.2e-26 Score=234.53 Aligned_cols=179 Identities=22% Similarity=0.362 Sum_probs=140.6
Q ss_pred ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCCCh
Q 006868 405 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGC 484 (628)
Q Consensus 405 ~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GtGI 484 (628)
.|+|||+|+| ...+.++|+|++........+...|.+|+||+++++ |++|.+.+|.|.|.+++...|+||||+||||
T Consensus 86 ~R~ySias~p-~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~~vlIAgGtGI 162 (283)
T cd06188 86 SRAYSLANYP-AEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKP--GDKVTASGPFGEFFIKDTDREMVFIGGGAGM 162 (283)
T ss_pred ccccCcCCCC-CCCCeEEEEEEEeccCCccCCCCCceehhHHhcCCC--CCEEEEECccccccccCCCCcEEEEEecccH
Confidence 4999999998 356889999976533221113457999999999999 9999999999999887556799999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC------Cccchhh
Q 006868 485 APFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQH 558 (628)
Q Consensus 485 APfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yVqd 558 (628)
|||+++++++...... ..+++||||+|+.+|++|.+||+++.+.++++ ++++++|++.. .++||++
T Consensus 163 tP~~s~l~~~~~~~~~--~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~~~~G~v~~ 234 (283)
T cd06188 163 APLRSHIFHLLKTLKS--KRKISFWYGARSLKELFYQEEFEALEKEFPNF------KYHPVLSEPQPEDNWDGYTGFIHQ 234 (283)
T ss_pred hHHHHHHHHHHhcCCC--CceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEEEECCCCccCCCCCcceeecH
Confidence 9999999997664421 26899999999999999999999999876777 78888887531 3678888
Q ss_pred hHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 559 KMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 559 ~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
.+.+.... ... ..+..+|+|||+ .|.+.+.+.|.+.
T Consensus 235 ~~~~~~~~--~~~~~~~~~vyiCGP~-~m~~~~~~~l~~~ 271 (283)
T cd06188 235 VLLENYLK--KHPAPEDIEFYLCGPP-PMNSAVIKMLDDL 271 (283)
T ss_pred HHHHHHhc--cCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence 76654210 001 125789999998 9999888877653
No 30
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.93 E-value=6.8e-26 Score=228.83 Aligned_cols=181 Identities=20% Similarity=0.332 Sum_probs=149.0
Q ss_pred CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCC
Q 006868 390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~ 467 (628)
..|||++...+|.. ..|+|||+|.| .+.+.++|+|+. ...|.+|+||. .+++ |++|.+.+|.|.|.
T Consensus 36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~-~~~~~l~l~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 103 (238)
T cd06211 36 FQAGQYVNLQAPGYEGTRAFSIASSP-SDAGEIELHIRL---------VPGGIATTYVHKQLKE--GDELEISGPYGDFF 103 (238)
T ss_pred cCCCCeEEEEcCCCCCccccccCCCC-CCCCEEEEEEEE---------CCCCcchhhHhhcCCC--CCEEEEECCccceE
Confidence 36899988888865 68999999998 456889999954 35699999996 7999 99999999999998
Q ss_pred CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
++ +...|+||||+|||||||++++++....+.. .+++||||+|+.+|++|.+||+++.+.+.++ +++.++
T Consensus 104 ~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 174 (238)
T cd06211 104 VRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDT---RKITLFFGARTRAELYYLDEFEALEKDHPNF------KYVPAL 174 (238)
T ss_pred ecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCC---CcEEEEEecCChhhhccHHHHHHHHHhCCCe------EEEEEE
Confidence 77 5558999999999999999999998876543 6899999999999999999999998876677 788889
Q ss_pred ecCCC------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 547 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 547 Sr~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
||+.. .++||++.+.+.... -.+++.+|+|||+ .|.+++.+.|.+
T Consensus 175 s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~~~~~L~~ 225 (238)
T cd06211 175 SREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGPP-PMIDACIKTLMQ 225 (238)
T ss_pred CCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECCH-HHHHHHHHHHHH
Confidence 98542 357888766543210 0136799999998 999998887765
No 31
>PRK08051 fre FMN reductase; Validated
Probab=99.93 E-value=6.4e-26 Score=228.11 Aligned_cols=180 Identities=21% Similarity=0.273 Sum_probs=145.8
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHH-hhCcCCCCCceEEEEeecCCCCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW-LAGLDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~-L~~l~~~~G~~v~i~~~~g~F~l 468 (628)
..|||++...+|....|+|||+|.| ...+.++|+|+.+ ..|..+.+ +.++++ |++|.+.+|.|.|.+
T Consensus 30 ~~pGQ~v~l~~~~~~~r~ySias~p-~~~~~l~~~v~~~---------~~~~~~~~~~~~l~~--G~~v~v~gP~G~~~~ 97 (232)
T PRK08051 30 FRAGQYLMVVMGEKDKRPFSIASTP-REKGFIELHIGAS---------ELNLYAMAVMERILK--DGEIEVDIPHGDAWL 97 (232)
T ss_pred cCCCCEEEEEcCCCcceeecccCCC-CCCCcEEEEEEEc---------CCCcchHHHHHHcCC--CCEEEEEcCCCceEc
Confidence 4699999888887788999999998 3567899998543 33444444 568999 999999999999877
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+ +...|+||||+||||||+++++++....... .+++|+||+|+.+|.+|.+||+++.+.++++ +++.++|
T Consensus 98 ~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~---~~v~l~~g~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~ 168 (232)
T PRK08051 98 REESERPLLLIAGGTGFSYARSILLTALAQGPN---RPITLYWGGREEDHLYDLDELEALALKHPNL------HFVPVVE 168 (232)
T ss_pred cCCCCCcEEEEecCcCcchHHHHHHHHHHhCCC---CcEEEEEEeccHHHhhhhHHHHHHHHHCCCc------EEEEEeC
Confidence 6 5568999999999999999999999876543 7899999999999999999999999886677 8888888
Q ss_pred cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHH-HH
Q 006868 548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF-EE 596 (628)
Q Consensus 548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L-~~ 596 (628)
++++ .++||++.+.+.... ..+..+|+|||+ .|+++|.+.| .+
T Consensus 169 ~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp~-~m~~~v~~~l~~~ 216 (232)
T PRK08051 169 QPEEGWQGKTGTVLTAVMQDFGS-----LAEYDIYIAGRF-EMAKIARELFCRE 216 (232)
T ss_pred CCCCCcccceeeehHHHHhhccC-----cccCEEEEECCH-HHHHHHHHHHHHH
Confidence 7543 467888766543111 135789999998 9999988777 44
No 32
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.93 E-value=8.2e-26 Score=227.24 Aligned_cols=183 Identities=18% Similarity=0.196 Sum_probs=147.1
Q ss_pred CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868 390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 467 (628)
..||||+...+|.. .+|+|||+|.| ...+.++|+|+. ...|.+|.||.+ +++ |++|.+.+|.|.|.
T Consensus 24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~-~~~~~~~~~vk~---------~~~G~~s~~l~~~~~~--g~~v~v~gP~G~~~ 91 (232)
T cd06190 24 FLPGQYALLALPGVEGARAYSMANLA-NASGEWEFIIKR---------KPGGAASNALFDNLEP--GDELELDGPYGLAY 91 (232)
T ss_pred cCCCCEEEEECCCCCcccCccCCcCC-CCCCEEEEEEEE---------cCCCcchHHHhhcCCC--CCEEEEECCcccce
Confidence 46899999988877 78999999998 356889999943 356899999975 799 99999999999987
Q ss_pred CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
++ +...++||||+|||||||++++++....... ...+++|+||+|+.+|++|.+||+++.+.+.++ ++++++
T Consensus 92 ~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 164 (232)
T cd06190 92 LRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL-SDRPVDLFYGGRTPSDLCALDELSALVALGARL------RVTPAV 164 (232)
T ss_pred ecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC-CCCeEEEEEeecCHHHHhhHHHHHHHHHhCCCE------EEEEEe
Confidence 76 5568999999999999999999998875211 127899999999999999999999999874555 788888
Q ss_pred ecCCC--------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 547 SRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 547 Sr~~~--------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
|+++. .++|+++.+.+.... ...+..||+|||+ .|.+.+.+.|.+
T Consensus 165 s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~ 217 (232)
T cd06190 165 SDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGPP-PMVDAVQRMLMI 217 (232)
T ss_pred CCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECCH-HHHHHHHHHHHH
Confidence 87643 246787766554221 1237899999998 888888776655
No 33
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.93 E-value=1.1e-25 Score=239.18 Aligned_cols=179 Identities=20% Similarity=0.304 Sum_probs=149.1
Q ss_pred CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCCC
Q 006868 391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP 469 (628)
Q Consensus 391 ~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~lp 469 (628)
.||||+...+|....|+|||+|+| .+.+.++|+|+. .+.|.+|+||. .+++ |+.|.+.+|.|.|.++
T Consensus 133 ~pGQfv~l~~~~~~~R~ySias~p-~~~~~l~~~ik~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~~ 200 (339)
T PRK07609 133 LAGQYIEFILKDGKRRSYSIANAP-HSGGPLELHIRH---------MPGGVFTDHVFGALKE--RDILRIEGPLGTFFLR 200 (339)
T ss_pred CCCCeEEEECCCCceeeeecCCCC-CCCCEEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEEcCceeEEec
Confidence 589998888887778999999998 345899999944 46799999996 7999 9999999999999988
Q ss_pred -CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868 470 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 548 (628)
Q Consensus 470 -~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 548 (628)
....|+||||+|||||||++++++....+.. .+++||||+|+++|++|.++|++|.++++++ +++.++||
T Consensus 201 ~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~---~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~~------~~~~~~s~ 271 (339)
T PRK07609 201 EDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQ---RPVTLYWGARRPEDLYLSALAEQWAEELPNF------RYVPVVSD 271 (339)
T ss_pred CCCCCCEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEecCChHHhccHHHHHHHHHhCCCe------EEEEEecC
Confidence 5678999999999999999999999876543 6899999999999999999999998776777 88889998
Q ss_pred CC------CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 549 KQ------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 549 ~~------~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+. ..++||++.+.+.... ..+..+|+|||+ .|.+.+.+.|.+
T Consensus 272 ~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp~-~m~~~~~~~l~~ 319 (339)
T PRK07609 272 ALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGSP-VMVYAARDDFVA 319 (339)
T ss_pred CCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence 42 1467888877543211 136799999998 999988877765
No 34
>PRK06703 flavodoxin; Provisional
Probab=99.93 E-value=6.4e-25 Score=206.00 Aligned_cols=148 Identities=29% Similarity=0.322 Sum_probs=135.0
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
||+++|+|+|+||||+++|+.|++.+...|+.+++.++++.+..++.+++.|||++||||.|.+|+++..|+++|....
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~- 79 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENID- 79 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCC-
Confidence 5789999999999999999999999999999999999999887788899999999999999999999999999986543
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCC-CCchhhHHHHHHHHHHHHHh
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP-SGYEGALDPWMRSLWRRLHQ 158 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~-~g~~~~~~~W~~~l~~~l~~ 158 (628)
+++++++|||+||++|++||.+++.++++|+++|++.+.+...++..+. +...+.+.+|.++|.+.+.+
T Consensus 80 ----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 149 (151)
T PRK06703 80 ----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKFAQ 149 (151)
T ss_pred ----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHHHh
Confidence 7799999999999999999999999999999999999998889888864 35778889999999877653
No 35
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=1.5e-25 Score=224.83 Aligned_cols=178 Identities=23% Similarity=0.352 Sum_probs=147.7
Q ss_pred CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868 390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 467 (628)
..|||++...+|.. ..|+|||+|.|. .+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~r~ysi~s~~~--~~~i~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~ 97 (228)
T cd06209 31 FLPGQYVNLQVPGTDETRSYSFSSAPG--DPRLEFLIRL---------LPGGAMSSYLRDRAQP--GDRLTLTGPLGSFY 97 (228)
T ss_pred cCCCCEEEEEeCCCCcccccccccCCC--CCeEEEEEEE---------cCCCcchhhHHhccCC--CCEEEEECCcccce
Confidence 36899988878765 489999999983 3889999844 357999999987 999 99999999999987
Q ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 468 lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
++....|++|||+|||||||++++++....... ++++|+||+|+.+|++|.++|++|.+.++++ ++.+++|
T Consensus 98 ~~~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s 168 (228)
T cd06209 98 LREVKRPLLMLAGGTGLAPFLSMLDVLAEDGSA---HPVHLVYGVTRDADLVELDRLEALAERLPGF------SFRTVVA 168 (228)
T ss_pred ecCCCCeEEEEEcccCHhHHHHHHHHHHhcCCC---CcEEEEEecCCHHHhccHHHHHHHHHhCCCe------EEEEEEc
Confidence 774458999999999999999999998876533 7899999999999999999999999876777 8888999
Q ss_pred cCCC---CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 548 RKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++.. .++||++.+.+.. +. .++.+|+|||+ .|++++++.|.+
T Consensus 169 ~~~~~~~~~g~v~~~~~~~~------~~~~~~~v~icGp~-~m~~~~~~~l~~ 214 (228)
T cd06209 169 DPDSWHPRKGYVTDHLEAED------LNDGDVDVYLCGPP-PMVDAVRSWLDE 214 (228)
T ss_pred CCCccCCCcCCccHHHHHhh------ccCCCcEEEEeCCH-HHHHHHHHHHHH
Confidence 8554 4568888766541 22 36789999998 999998888765
No 36
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.93 E-value=1.4e-25 Score=226.04 Aligned_cols=181 Identities=17% Similarity=0.232 Sum_probs=147.7
Q ss_pred CCCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868 390 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 390 ~~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 467 (628)
..||||+...+|. ...|+|||+|+| ...+.++|+|+. ...|.+|+||.+ +++ |++|.+.+|.|.|.
T Consensus 35 ~~pGQ~v~l~~~~~~~~R~ySi~s~~-~~~~~l~~~i~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f~ 102 (236)
T cd06210 35 FVPGQFVEIEIPGTDTRRSYSLANTP-NWDGRLEFLIRL---------LPGGAFSTYLETRAKV--GQRLNLRGPLGAFG 102 (236)
T ss_pred cCCCCEEEEEcCCCccceecccCCCC-CCCCEEEEEEEE---------cCCCccchhhhhCcCC--CCEEEEecCcceee
Confidence 4689998887775 358999999998 346789999854 346899999986 999 99999999999998
Q ss_pred CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
++ ...+++||||+|||||||+++++++...... .+++||||+|+.+|++|.++|+++.+.++++ +++.++
T Consensus 103 l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 173 (236)
T cd06210 103 LRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEP---QEARLFFGVNTEAELFYLDELKRLADSLPNL------TVRICV 173 (236)
T ss_pred ecCCCCccEEEEccCcchhHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhhHHHHHHHHHhCCCe------EEEEEE
Confidence 87 5567999999999999999999998775433 7899999999999999999999999887888 888888
Q ss_pred ecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 547 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 547 Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
||+.. .++++++.+.+.... ...+..+|+|||+ .|.+.+++.|.+
T Consensus 174 s~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp~-~m~~~~~~~l~~ 222 (236)
T cd06210 174 WRPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGPP-GMVDAAFAAARE 222 (236)
T ss_pred cCCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCCH-HHHHHHHHHHHH
Confidence 87532 456777766543211 1235789999998 999998887765
No 37
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.93 E-value=2.1e-25 Score=242.44 Aligned_cols=180 Identities=20% Similarity=0.333 Sum_probs=145.3
Q ss_pred CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCC
Q 006868 403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 482 (628)
Q Consensus 403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~Gt 482 (628)
...|+|||+|.| .+++.++|+|+++.+....++.+.|.+|+||+++++ ||.|.+.+|.|.|.+++..+|+||||+||
T Consensus 208 ~~~R~ySias~p-~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~~~~~~~~ivlIAgGt 284 (409)
T PRK05464 208 PVIRAYSMANYP-EEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA 284 (409)
T ss_pred ceeeeeccCCCC-CCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCC--CCEEEEEccccCcEecCCCceEEEEEecc
Confidence 357999999998 456789999988766655556678999999999999 99999999999998765568999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC------Cccch
Q 006868 483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV 556 (628)
Q Consensus 483 GIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV 556 (628)
|||||++++++....... ..+++||||+|+++|++|.+||+++.+.++++ ++++++|+++. .+++|
T Consensus 285 GIaP~~sml~~~l~~~~~--~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v 356 (409)
T PRK05464 285 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYVEDFDQLAAENPNF------KWHVALSDPLPEDNWTGYTGFI 356 (409)
T ss_pred ChhHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEEcCCCCCCCCCCcccee
Confidence 999999999987664321 26899999999999999999999998877878 78888887532 35788
Q ss_pred hhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 557 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 557 qd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++.+.+.. +.+.. ..++.+|+|||+ .|.+++.+.|.+
T Consensus 357 ~~~l~~~~--l~~~~~~~~~~vyiCGP~-~m~~av~~~L~~ 394 (409)
T PRK05464 357 HNVLYENY--LKDHEAPEDCEYYMCGPP-MMNAAVIKMLKD 394 (409)
T ss_pred CHHHHHhh--hhhcCCCCCeEEEEECCH-HHHHHHHHHHHH
Confidence 88775442 11111 136799999998 999988877755
No 38
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.93 E-value=1.5e-25 Score=226.63 Aligned_cols=203 Identities=21% Similarity=0.276 Sum_probs=156.7
Q ss_pred CCCHHHHHHhcCCC----cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecC
Q 006868 390 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKG 464 (628)
Q Consensus 390 ~~p~~~l~~~lp~~----~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g 464 (628)
..||||+...+|.. ..|+|||+|.| ..+.++|+|.. ...|.+|+||+++++ |+.|.+. +|.|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~--~~~~i~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G 91 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAP--YEENLEFYIIL---------VPDGPLTPRLFKLKP--GDTIYVGKKPTG 91 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCC--CCCeEEEEEEE---------ecCCCCchHHhcCCC--CCEEEECcCCCC
Confidence 46899988777643 56999999998 34789998844 356999999999999 9999999 9999
Q ss_pred CCCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhc-CCCcccCCCCc
Q 006868 465 SLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGG 541 (628)
Q Consensus 465 ~F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~-~g~l~~~~~~~ 541 (628)
.|.++ . ...++||||+|||||||++++++....... .+++||||+|+++|++|.+||+++.+. ++++ +
T Consensus 92 ~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~ 162 (241)
T cd06195 92 FLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERF---DKIVLVHGVRYAEELAYQDEIEALAKQYNGKF------R 162 (241)
T ss_pred ceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCC---CcEEEEEccCCHHHhhhHHHHHHHHhhcCCCE------E
Confidence 99887 4 468999999999999999999998754433 789999999999999999999999876 4567 7
Q ss_pred EEEEEecCCCC---ccchhhhHHH-cHHHHHHH--HhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006868 542 FYVAFSRKQPQ---KVYVQHKMLE-QSQRIWNL--LLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA 615 (628)
Q Consensus 542 ~~~a~Sr~~~~---k~yVqd~l~~-~~~~v~~~--l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~ 615 (628)
+..++||++.. ++|+++.+.. ........ ..+++.||+|||+ .|.+++.+.|.+.. +..+.
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~G-----~~~~~------- 229 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNP-QMIDDTQELLKEKG-----FSKNH------- 229 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCH-HHHHHHHHHHHHcC-----CCccc-------
Confidence 88889987653 6788887653 11111111 1236899999998 89999988876642 22211
Q ss_pred HHHcCCEEEeec
Q 006868 616 LQRAGRYHVEAW 627 (628)
Q Consensus 616 l~~~~Ry~~dvw 627 (628)
-.+.++++.|.|
T Consensus 230 ~~~~~~~~~E~~ 241 (241)
T cd06195 230 RRKPGNITVEKY 241 (241)
T ss_pred cCCCceEEEecC
Confidence 044577777765
No 39
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.93 E-value=1.8e-25 Score=237.26 Aligned_cols=178 Identities=21% Similarity=0.327 Sum_probs=148.0
Q ss_pred CCHHHHHHhcCCCc-ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006868 391 MPIDWLVQLVPPLK-TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 391 ~p~~~l~~~lp~~~-~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l 468 (628)
.||||+...+|... .|+|||+|+| .+.+.++|+|+. ...|.+|+||. .+++ |+.|.+.+|.|.|.+
T Consensus 138 ~pGQ~v~l~~~~~~~~R~ySias~p-~~~~~l~~~ik~---------~~~G~~s~~L~~~l~~--G~~v~i~gP~G~f~l 205 (340)
T PRK11872 138 LPGQYARLQIPGTDDWRSYSFANRP-NATNQLQFLIRL---------LPDGVMSNYLRERCQV--GDEILFEAPLGAFYL 205 (340)
T ss_pred CCCCEEEEEeCCCCceeecccCCCC-CCCCeEEEEEEE---------CCCCcchhhHhhCCCC--CCEEEEEcCcceeEe
Confidence 58999887787654 7999999998 456889999954 35799999996 6999 999999999999988
Q ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868 469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 548 (628)
Q Consensus 469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 548 (628)
+...+|+||||+|||||||+++++++...... .+++||||+|+++|++|.+||++|.+.++++ +++.+.|+
T Consensus 206 ~~~~~~~vliagGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~dl~~~~el~~~~~~~~~~------~~~~~~s~ 276 (340)
T PRK11872 206 REVERPLVFVAGGTGLSAFLGMLDELAEQGCS---PPVHLYYGVRHAADLCELQRLAAYAERLPNF------RYHPVVSK 276 (340)
T ss_pred CCCCCcEEEEeCCcCccHHHHHHHHHHHcCCC---CcEEEEEecCChHHhccHHHHHHHHHHCCCc------EEEEEEeC
Confidence 74458999999999999999999998775433 6899999999999999999999999877888 88888886
Q ss_pred CCC----CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 549 KQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 549 ~~~----~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
.++ .++||++.+.+. .+. .+..+|+|||+ .|.+.+.+.|.+
T Consensus 277 ~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp~-~mv~~~~~~L~~ 322 (340)
T PRK11872 277 ASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGPP-PMVEAVKQWLDE 322 (340)
T ss_pred CCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCCH-HHHHHHHHHHHH
Confidence 543 468888876543 122 25689999998 999988887755
No 40
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.92 E-value=2.9e-25 Score=221.94 Aligned_cols=179 Identities=21% Similarity=0.275 Sum_probs=147.6
Q ss_pred CCHHHHHHhcCCCc--ccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868 391 MPIDWLVQLVPPLK--TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 391 ~p~~~l~~~lp~~~--~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 467 (628)
.|||++...+|... .|+|||+|.| ...+.++|+|+. ...|.+|+||.+ +++ |+.|.+.+|.|.|.
T Consensus 25 ~pGq~i~l~~~~~~~~~r~ysi~s~~-~~~~~~~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 92 (224)
T cd06187 25 WAGQYVNVTVPGRPRTWRAYSPANPP-NEDGEIEFHVRA---------VPGGRVSNALHDELKV--GDRVRLSGPYGTFY 92 (224)
T ss_pred CCCceEEEEcCCCCCcceeccccCCC-CCCCEEEEEEEe---------CCCCcchHHHhhcCcc--CCEEEEeCCccceE
Confidence 58999888887543 7999999998 345789999943 346999999986 999 99999999999998
Q ss_pred CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
++ ....++||||+|||||||+++++++...... .+++|+|++|+.+|++|.++|+++.+.++++ ++..++
T Consensus 93 ~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~---~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~ 163 (224)
T cd06187 93 LRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEP---RPVHLFFGARTERDLYDLEGLLALAARHPWL------RVVPVV 163 (224)
T ss_pred ecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhhcChHHHHHHHHhCCCe------EEEEEe
Confidence 87 5468999999999999999999999876533 7899999999999999999999998875666 777788
Q ss_pred ecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 547 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 547 Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++++. .++|+++.+.+.... .+++.+|+|||+ .|.+++++.|++
T Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~v~vcGp~-~~~~~v~~~l~~ 211 (224)
T cd06187 164 SHEEGAWTGRRGLVTDVVGRDGPD-----WADHDIYICGPP-AMVDATVDALLA 211 (224)
T ss_pred CCCCCccCCCcccHHHHHHHhccc-----cccCEEEEECCH-HHHHHHHHHHHH
Confidence 87543 467888877654211 137899999998 999998888765
No 41
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.92 E-value=2.6e-25 Score=241.52 Aligned_cols=177 Identities=19% Similarity=0.250 Sum_probs=142.2
Q ss_pred CCHHHHHHhcC--C--C-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC
Q 006868 391 MPIDWLVQLVP--P--L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 464 (628)
Q Consensus 391 ~p~~~l~~~lp--~--~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g 464 (628)
.||||+...++ . . .+|+|||+|+| .++.++|+|+. ...|.+|+||.+ +++ |++|.+.+|.|
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~ySias~p--~~~~l~~~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G 252 (399)
T PRK13289 186 KPGQYLGVRLDPEGEEYQEIRQYSLSDAP--NGKYYRISVKR---------EAGGKVSNYLHDHVNV--GDVLELAAPAG 252 (399)
T ss_pred CCCCeEEEEEecCCccccceeEEEeeeCC--CCCeEEEEEEE---------CCCCeehHHHhhcCCC--CCEEEEEcCcc
Confidence 48888877764 2 1 35999999998 35789999843 456999999975 999 99999999999
Q ss_pred CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 543 (628)
Q Consensus 465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 543 (628)
.|.++ ...+|+||||+|||||||+++++++...... .+++||||+|+.+|++|++||+++.+.++++ +++
T Consensus 253 ~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~------~~~ 323 (399)
T PRK13289 253 DFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPK---RPVHFIHAARNGGVHAFRDEVEALAARHPNL------KAH 323 (399)
T ss_pred ccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCChhhchHHHHHHHHHHhCCCc------EEE
Confidence 99988 5678999999999999999999998765543 7999999999999999999999999886677 889
Q ss_pred EEEecCCCC---------ccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 544 VAFSRKQPQ---------KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 544 ~a~Sr~~~~---------k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
.++|++... .++++. +.+.+.+. .++.+|||||+ .|.+++.+.|.+
T Consensus 324 ~~~s~~~~~~~~~~~~~~~g~i~~------~~l~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~ 379 (399)
T PRK13289 324 TWYREPTEQDRAGEDFDSEGLMDL------EWLEAWLPDPDADFYFCGPV-PFMQFVAKQLLE 379 (399)
T ss_pred EEECCCccccccCCcccccCcccH------HHHHhhCCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 999975431 133332 22333343 37899999998 999998877765
No 42
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.92 E-value=3.6e-25 Score=240.25 Aligned_cols=180 Identities=22% Similarity=0.353 Sum_probs=142.6
Q ss_pred CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCC
Q 006868 403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 482 (628)
Q Consensus 403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~Gt 482 (628)
...|+|||+|+| ...+.++|+|+++.+.....+.+.|.+|+||.++++ ||.|.+.+|.|.|.+.+..+|+||||+||
T Consensus 204 ~~~R~ySias~p-~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~lvlIAgGt 280 (405)
T TIGR01941 204 ETVRAYSMANYP-AEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGA 280 (405)
T ss_pred ccceeecCCCCC-CCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCC--cCEEEEEeccCCCeecCCCCCEEEEecCc
Confidence 356999999998 456899999987644333234567999999999999 99999999999998775568999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC------Cccch
Q 006868 483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYV 556 (628)
Q Consensus 483 GIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yV 556 (628)
|||||++|+++....... ..+++||||+|+++|++|.+||+++.+.++++ ++++++|+++. .+++|
T Consensus 281 GIaP~lsmi~~~l~~~~~--~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 281 GMAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYQEDFDQLEAENPNF------VWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred CcchHHHHHHHHHhcCCC--CCeEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEEeCCCCccCCCCCcccee
Confidence 999999999987654221 26899999999999999999999998876877 78888887532 35788
Q ss_pred hhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 557 QHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 557 qd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++.+.+.. +.+.. ..++.+|+|||+ .|.+.+.+.|.+
T Consensus 353 ~~~l~~~~--l~~~~~~~~~~vylCGP~-~m~~av~~~L~~ 390 (405)
T TIGR01941 353 HNVLYENY--LKDHDAPEDCEFYMCGPP-MMNAAVIKMLED 390 (405)
T ss_pred CHHHHHhh--hcccCCCCCeEEEEeCCH-HHHHHHHHHHHH
Confidence 87765431 11111 136789999998 999988877755
No 43
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.92 E-value=3.3e-25 Score=222.85 Aligned_cols=180 Identities=24% Similarity=0.394 Sum_probs=146.9
Q ss_pred CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCC
Q 006868 390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~ 467 (628)
..|||++...+|.. ..|+|||+|.| ...+.++|+|+. ...|.+|+||.+ +++ |++|.+.+|.|.|.
T Consensus 30 ~~pGQ~v~l~~~~~~~~r~ySi~s~~-~~~~~l~l~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~ 97 (232)
T cd06212 30 FFAGQYVDITVPGTEETRSFSMANTP-ADPGRLEFIIKK---------YPGGLFSSFLDDGLAV--GDPVTVTGPYGTCT 97 (232)
T ss_pred cCCCCeEEEEcCCCCcccccccCCCC-CCCCEEEEEEEE---------CCCCchhhHHhhcCCC--CCEEEEEcCcccce
Confidence 36999988877754 68999999998 345889999944 356999999985 999 99999999999998
Q ss_pred CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
++ ....++||||+|||||||++++++....+.. .+++|+||+|+.+|++|.+||+++.+.+.++ +++.++
T Consensus 98 ~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~ 168 (232)
T cd06212 98 LRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSD---RPVRFFYGARTARDLFYLEEIAALGEKIPDF------TFIPAL 168 (232)
T ss_pred ecCCCCCcEEEEecCcchhHHHHHHHHHHhcCCC---CcEEEEEeccchHHhccHHHHHHHHHhCCCE------EEEEEE
Confidence 87 5568999999999999999999999876543 6899999999999999999999998875777 788888
Q ss_pred ecCCC------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 547 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 547 Sr~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
|++.. ..+++++.+.+.... .++..+|+|||+ .|.+.+.+.|.+
T Consensus 169 s~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~v~~CGp~-~~~~~v~~~l~~ 218 (232)
T cd06212 169 SESPDDEGWSGETGLVTEVVQRNEAT-----LAGCDVYLCGPP-PMIDAALPVLEM 218 (232)
T ss_pred CCCCCCCCCcCCcccHHHHHHhhccC-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence 88542 356777765443211 136889999998 999888877764
No 44
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.92 E-value=3.2e-25 Score=230.00 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=143.1
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 468 (628)
..||||+...+|....|+|||+|+| ..++.++|+|+ +.|.+|+||+++++ |++|.+.+|.|. |.+
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p-~~~~~l~l~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~ 103 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSP-TRKGFFELCIR-----------RAGRVTTVIHRLKE--GDIVGVRGPYGNGFPV 103 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCC-CCCCEEEEEEE-----------eCChHHHHHHhCCC--CCEEEEeCCCCCCCCc
Confidence 3689999888887667999999998 45678999994 24899999999999 999999999997 666
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+ ...+|+||||+|||||||+++++++...... ..+++|+||+|+.+|++|++||++|.+.++++ +++.++|
T Consensus 104 ~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~--~~~v~l~~~~r~~~d~~~~deL~~l~~~~~~~------~~~~~~s 175 (289)
T PRK08345 104 DEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWK--YGNITLIYGAKYYEDLLFYDELIKDLAEAENV------KIIQSVT 175 (289)
T ss_pred ccccCceEEEEecccchhHHHHHHHHHHhcCCC--CCcEEEEEecCCHHHhhHHHHHHHHHhcCCCE------EEEEEec
Confidence 5 4457999999999999999999998765421 27899999999999999999999998766777 7888899
Q ss_pred cCCCC---------------ccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 548 RKQPQ---------------KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 548 r~~~~---------------k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
|++.. +++|++.+.+.. . ..+..+|+|||+ .|.+.+.+.|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------~~~~~~~vyiCGP~-~m~~~v~~~L~~~ 234 (289)
T PRK08345 176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREAN------TDPKNTYAAICGPP-VMYKFVFKELINR 234 (289)
T ss_pred CCCCCcCccccccccccccccCchhhhhhhcC------CCccccEEEEECCH-HHHHHHHHHHHHc
Confidence 85432 234444333221 1 135789999998 9999998887653
No 45
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.92 E-value=7.1e-25 Score=219.76 Aligned_cols=177 Identities=20% Similarity=0.329 Sum_probs=144.3
Q ss_pred CCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHh-hCcCCCCCceEEEEeecCCCCC
Q 006868 391 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 391 ~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v~i~~~~g~F~l 468 (628)
.||||+...+|.. ..|+|||+|+| ...+.++|+|+. ...|.+|+|| ..+++ |++|.+.+|.|.|.+
T Consensus 29 ~pGQ~~~l~~~~~~~~r~ysi~s~~-~~~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~ 96 (227)
T cd06213 29 KAGQYAELTLPGLPAARSYSFANAP-QGDGQLSFHIRK---------VPGGAFSGWLFGADRT--GERLTVRGPFGDFWL 96 (227)
T ss_pred CCCCEEEEEeCCCCcccccccCCCC-CCCCEEEEEEEE---------CCCCcchHHHHhcCCC--CCEEEEeCCCcceEe
Confidence 4899988888765 48999999998 346889999843 3569999999 46999 999999999999988
Q ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcccCCCCcEEEEEe
Q 006868 469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~~a~S 547 (628)
++...++||||+|||||||+++++++...... .++++|||+|+++|.+|.+||+++.+.+ +++ +++.++|
T Consensus 97 ~~~~~~~lliagG~GiaP~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~~~~s 167 (227)
T cd06213 97 RPGDAPILCIAGGSGLAPILAILEQARAAGTK---RDVTLLFGARTQRDLYALDEIAAIAARWRGRF------RFIPVLS 167 (227)
T ss_pred CCCCCcEEEEecccchhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhccHHHHHHHHHhccCCe------EEEEEec
Confidence 74457999999999999999999999876533 6899999999999999999999998753 455 7788888
Q ss_pred cCCC------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 548 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++.. .+++|++.+.+. +..+..+|+|||+ .|.+++++.|.+
T Consensus 168 ~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp~-~~~~~~~~~l~~ 214 (227)
T cd06213 168 EEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGPP-AMIDAAIAVLRA 214 (227)
T ss_pred CCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECCH-HHHHHHHHHHHH
Confidence 7642 245777765543 2357899999998 999988877765
No 46
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.92 E-value=5.5e-25 Score=233.00 Aligned_cols=182 Identities=15% Similarity=0.248 Sum_probs=143.8
Q ss_pred CCCHHHHHHhcCCC--cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCC
Q 006868 390 QMPIDWLVQLVPPL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 390 ~~p~~~l~~~lp~~--~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 466 (628)
..||||+...+|.- ..|+|||+|+| ...+.++|+|+ +...|.+|+||. ++++ |++|.+.+|.|.|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p-~~~~~l~i~Vk---------~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f 104 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTP-GVSEFITLTVR---------RIDDGVGSQWLTRDVKR--GDYLWLSDAMGEF 104 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCC-CCCCcEEEEEE---------EcCCCcchhHHHhcCCC--CCEEEEeCCcccc
Confidence 35999988777642 46999999998 45578999994 346799999996 7999 9999999999999
Q ss_pred CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
.++ ....|+||||+|||||||++|+++....... .+++|+||+|+.+|++|.+||+++.+.++++ ++.+.
T Consensus 105 ~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~---~~v~l~y~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 175 (332)
T PRK10684 105 TCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQ---ADVQVIFNVRTPQDVIFADEWRQLKQRYPQL------NLTLV 175 (332)
T ss_pred ccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CCEEEEEeCCChHHhhhHHHHHHHHHHCCCe------EEEEE
Confidence 987 5668999999999999999999998765433 7899999999999999999999999876776 67777
Q ss_pred EecCCCCccchhhhHHHcHHHHHHHHhC--CCEEEEeCCCCCCHHHHHHHHHH
Q 006868 546 FSRKQPQKVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~~--~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
.+++. .++|++..+.+. .+.+.+.+ +..+|+|||+ .|++.+.+.|.+
T Consensus 176 ~~~~~-~~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP~-~m~~~v~~~l~~ 224 (332)
T PRK10684 176 AENNA-TEGFIAGRLTRE--LLQQAVPDLASRTVMTCGPA-PYMDWVEQEVKA 224 (332)
T ss_pred eccCC-CCCccccccCHH--HHHHhcccccCCEEEEECCH-HHHHHHHHHHHH
Confidence 66543 244444444321 12222222 6799999998 999988887765
No 47
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.92 E-value=7e-25 Score=220.38 Aligned_cols=178 Identities=17% Similarity=0.308 Sum_probs=141.7
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCC
Q 006868 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~ 465 (628)
..||||+...++. ..+|+|||+|.|. .+.++|+|+. ...|.+|+||. ++++ |++|.+.+|.|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~ 94 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKR---------VPGGRVSNYLREHIQP--GMTVEVMGPQGH 94 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEE---------CCCCccchHHHhcCCC--CCEEEEeCCccc
Confidence 3689998777642 2479999999983 6889999954 34599999997 6999 999999999999
Q ss_pred CCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868 466 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 544 (628)
Q Consensus 466 F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 544 (628)
|.++ ....++||||+||||||+++++++....... .+++||||+|+++|++|.+||+++.+.++++ ++.+
T Consensus 95 f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~ 165 (231)
T cd06191 95 FVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPE---SDFTLIHSARTPADMIFAQELRELADKPQRL------RLLC 165 (231)
T ss_pred eEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEE
Confidence 9887 5668999999999999999999998765433 7899999999999999999999998865777 8899
Q ss_pred EEecCCCC------ccchhhhHHHcHHHHHHHHhC--CCEEEEeCCCCCCHHHHHHHHHH
Q 006868 545 AFSRKQPQ------KVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 545 a~Sr~~~~------k~yVqd~l~~~~~~v~~~l~~--~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++||++.. ++++++.+.+ .++.. ++.+|+|||+ .|.+++++.|.+
T Consensus 166 ~~s~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~vyicGp~-~mv~~~~~~l~~ 218 (231)
T cd06191 166 IFTRETLDSDLLHGRIDGEQSLGA------ALIPDRLEREAFICGPA-GMMDAVETALKE 218 (231)
T ss_pred EECCCCCCccccCCcccccHHHHH------HhCccccCCeEEEECCH-HHHHHHHHHHHH
Confidence 99986532 2233322221 12222 5799999998 999888877754
No 48
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.92 E-value=1.7e-24 Score=216.10 Aligned_cols=180 Identities=22% Similarity=0.265 Sum_probs=142.9
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecCCCCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g~F~l 468 (628)
..||||+...+|....|+|||+|+| ...+.++|+|+. ...|.+|.||.+ +++ |+.|.+.+|.|.|.+
T Consensus 24 ~~pGQ~v~l~~~~~~~r~ySi~s~~-~~~~~~~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~~~ 91 (222)
T cd06194 24 YLPGQYVNLRRAGGLARSYSPTSLP-DGDNELEFHIRR---------KPNGAFSGWLGEEARP--GHALRLQGPFGQAFY 91 (222)
T ss_pred cCCCCEEEEEcCCCCceeeecCCCC-CCCCEEEEEEEe---------ccCCccchHHHhccCC--CCEEEEecCcCCeec
Confidence 3589999888887788999999998 344789999843 356999999986 799 999999999998765
Q ss_pred C--CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 469 P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 469 p--~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
. ....++||||+|||||||+++++++...... ++++||||+|+.+|++|.+||+++.+.++++ +++.+.
T Consensus 92 ~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 162 (222)
T cd06194 92 RPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQ---GEIRLVHGARDPDDLYLHPALLWLAREHPNF------RYIPCV 162 (222)
T ss_pred cCCCCCCCEEEEecCcchhhHHHHHHHHHhcCCC---ccEEEEEecCChhhccCHHHHHHHHHHCCCe------EEEEEE
Confidence 4 4567999999999999999999998765543 7899999999999999999999999865777 788888
Q ss_pred ecCCCCc--cchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 547 SRKQPQK--VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 547 Sr~~~~k--~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++++... .++.++. +. +. ...+++.+|||||+ .|.+++++.|.+
T Consensus 163 ~~~~~~~~~~~~~~~~-~~---~~-~~~~~~~vyicGp~-~m~~~~~~~L~~ 208 (222)
T cd06194 163 SEGSQGDPRVRAGRIA-AH---LP-PLTRDDVVYLCGAP-SMVNAVRRRAFL 208 (222)
T ss_pred ccCCCCCcccccchhh-hh---hc-cccCCCEEEEeCCH-HHHHHHHHHHHH
Confidence 8865432 1222211 11 11 12347899999998 999999888765
No 49
>PRK05713 hypothetical protein; Provisional
Probab=99.91 E-value=9.6e-25 Score=229.10 Aligned_cols=173 Identities=18% Similarity=0.185 Sum_probs=139.2
Q ss_pred CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC-CCCCC
Q 006868 391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP 469 (628)
Q Consensus 391 ~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-~F~lp 469 (628)
.||||+...++....|+|||+|.| ...+.++|+|+. .+.|..|+||.++++ |++|.+.+|.| .|.++
T Consensus 120 ~~GQfv~l~~~~~~~R~ySias~p-~~~~~l~~~I~~---------~~~G~~s~~l~~l~~--Gd~v~l~~p~gg~~~~~ 187 (312)
T PRK05713 120 RAGQHLVLWTAGGVARPYSLASLP-GEDPFLEFHIDC---------SRPGAFCDAARQLQV--GDLLRLGELRGGALHYD 187 (312)
T ss_pred CCCCEEEEecCCCcccccccCcCC-CCCCeEEEEEEE---------cCCCccchhhhcCCC--CCEEEEccCCCCceEec
Confidence 589998777776678999999998 456789999943 467999999999999 99999999986 56555
Q ss_pred -C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 470 -P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 470 -~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+ ..+|+||||+|||||||+|++++....+.. .+++|+||+|+.+|++|.+||++|.+.++++ ++..+.+
T Consensus 188 ~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~~ 258 (312)
T PRK05713 188 PDWQERPLWLLAAGTGLAPLWGILREALRQGHQ---GPIRLLHLARDSAGHYLAEPLAALAGRHPQL------SVELVTA 258 (312)
T ss_pred CCCCCCcEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEEcCchHHhhhHHHHHHHHHHCCCc------EEEEEEC
Confidence 4 568999999999999999999998776543 7899999999999999999999999876777 6776665
Q ss_pred cCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 548 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+ ++++.+.+.. ....+..+|+|||+ .|.+.+.+.|.+
T Consensus 259 ~------~~~~~l~~~~-----~~~~~~~vyiCGp~-~mv~~~~~~L~~ 295 (312)
T PRK05713 259 A------QLPAALAELR-----LVSRQTMALLCGSP-ASVERFARRLYL 295 (312)
T ss_pred c------chhhhhhhcc-----CCCCCeEEEEeCCH-HHHHHHHHHHHH
Confidence 3 3444433211 01235789999998 999999888864
No 50
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.91 E-value=3.5e-24 Score=217.53 Aligned_cols=178 Identities=20% Similarity=0.315 Sum_probs=141.9
Q ss_pred CCCHHHHHHhcC--C---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeec
Q 006868 390 QMPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK 463 (628)
Q Consensus 390 ~~p~~~l~~~lp--~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~ 463 (628)
..|||++...++ . ...|+|||+|.| ..+.++|+|+. ...|.+|+||.+ +++ |++|.+.+|.
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~--~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~ 103 (247)
T cd06184 37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAP--NGDYYRISVKR---------EPGGLVSNYLHDNVKV--GDVLEVSAPA 103 (247)
T ss_pred CCCCCEEEEEEecCCCCCceeEEeEeccCC--CCCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCC
Confidence 358898877764 2 367999999998 34588888843 346999999986 999 9999999999
Q ss_pred CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcE
Q 006868 464 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGF 542 (628)
Q Consensus 464 g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~ 542 (628)
|.|.++ ...+++||||+|||||||+++++++...... .+++||||+|++++.+|.++|+++.+.++++ ++
T Consensus 104 G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~ 174 (247)
T cd06184 104 GDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG---RPVTFIHAARNSAVHAFRDELEELAARLPNL------KL 174 (247)
T ss_pred CceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCC---CcEEEEEEcCchhhHHHHHHHHHHHhhCCCe------EE
Confidence 999988 4678999999999999999999999875433 7899999999999999999999998875677 88
Q ss_pred EEEEecCCCC--------ccchhhhHHHcHHHHHH-HHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 543 YVAFSRKQPQ--------KVYVQHKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 543 ~~a~Sr~~~~--------k~yVqd~l~~~~~~v~~-~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++++|+.... .++++.. .+.+ +...+..+|+|||+ .|++++++.|.+
T Consensus 175 ~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp~-~m~~~v~~~l~~ 230 (247)
T cd06184 175 HVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGPV-PFMQAVREGLKA 230 (247)
T ss_pred EEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 8999986432 2344321 1222 12348899999998 999988877765
No 51
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.91 E-value=4.7e-24 Score=217.28 Aligned_cols=179 Identities=20% Similarity=0.285 Sum_probs=146.3
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 468 (628)
..||||+...+|....|+|||+|+| ..++.++|+|+ +.|..|+||.++++ |++|.+.+|.|. |.+
T Consensus 28 ~~pGQ~i~l~~~~~~~~pySi~s~~-~~~~~l~~~Ik-----------~~G~~S~~L~~l~~--G~~v~i~gP~G~~f~~ 93 (253)
T cd06221 28 FKPGQFVMLSLPGVGEAPISISSDP-TRRGPLELTIR-----------RVGRVTEALHELKP--GDTVGLRGPFGNGFPV 93 (253)
T ss_pred cCCCCEEEEEcCCCCccceEecCCC-CCCCeEEEEEE-----------eCChhhHHHHcCCC--CCEEEEECCcCCCccc
Confidence 4689999888887667999999998 34688999984 24889999999999 999999999998 666
Q ss_pred CC-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 469 PP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+. ..+|+||||+||||||++++++++...... ..+++|||+.|+.+|++|+++|+++.+. .++ ++.+++|
T Consensus 94 ~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~--~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~~~------~~~~~~s 164 (253)
T cd06221 94 EEMKGKDLLLVAGGLGLAPLRSLINYILDNRED--YGKVTLLYGARTPEDLLFKEELKEWAKR-SDV------EVILTVD 164 (253)
T ss_pred ccccCCeEEEEccccchhHHHHHHHHHHhcccc--CCcEEEEEecCChHHcchHHHHHHHHhc-CCe------EEEEEeC
Confidence 53 678999999999999999999999875321 2789999999999999999999999988 777 7888888
Q ss_pred cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
++.+ ..++|++.+.+.... ..+..||+|||+ .|.+++.+.|.+.
T Consensus 165 ~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyicGp~-~mv~~~~~~L~~~ 212 (253)
T cd06221 165 RAEEGWTGNVGLVTDLLPELTLD-----PDNTVAIVCGPP-IMMRFVAKELLKL 212 (253)
T ss_pred CCCCCccCCccccchhHHhcCCC-----cCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 7543 356777766543211 147899999998 9999888888653
No 52
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.91 E-value=5.3e-24 Score=213.83 Aligned_cols=179 Identities=22% Similarity=0.329 Sum_probs=141.3
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCC
Q 006868 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~ 465 (628)
..|||++...+|. ...|+|||+|.| .+.+.++|+|+. ...|.+|.||. ++++ |+.|.+.+|.|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~-~~~~~l~~~vk~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~ 95 (231)
T cd06215 28 YKPGQFLTLELEIDGETVYRAYTLSSSP-SRPDSLSITVKR---------VPGGLVSNWLHDNLKV--GDELWASGPAGE 95 (231)
T ss_pred cCCCCeEEEEEecCCCeEEEeeecccCC-CCCCcEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCcce
Confidence 3689998777752 247999999998 456679999844 34689999996 7999 999999999999
Q ss_pred CCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868 466 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 544 (628)
Q Consensus 466 F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 544 (628)
|.++ ....++||||+|||||||++++++....+.. .+++||||+|+++|++|.++|+++.+.+.++ ++.+
T Consensus 96 f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~ 166 (231)
T cd06215 96 FTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD---ADIVFIHSARSPADIIFADELEELARRHPNF------RLHL 166 (231)
T ss_pred eEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CcEEEEEecCChhhhhHHHHHHHHHHHCCCe------EEEE
Confidence 9887 4478999999999999999999998775533 6899999999999999999999999876777 7888
Q ss_pred EEecCCC-----CccchhhhHHHcHHHHHHHHhC--CCEEEEeCCCCCCHHHHHHHHHH
Q 006868 545 AFSRKQP-----QKVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 545 a~Sr~~~-----~k~yVqd~l~~~~~~v~~~l~~--~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+.++++. ..+++...+ +.+.+.+ +..+|+|||+ .|.+.+.+.|.+
T Consensus 167 ~~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp~-~m~~~~~~~l~~ 218 (231)
T cd06215 167 ILEQPAPGAWGGYRGRLNAEL------LALLVPDLKERTVFVCGPA-GFMKAVKSLLAE 218 (231)
T ss_pred EEccCCCCcccccCCcCCHHH------HHHhcCCccCCeEEEECCH-HHHHHHHHHHHH
Confidence 8887554 123443311 1222222 4789999998 999888877754
No 53
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.90 E-value=4.4e-24 Score=212.58 Aligned_cols=175 Identities=15% Similarity=0.210 Sum_probs=135.5
Q ss_pred CCCHHHHHHhcCC----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC
Q 006868 390 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~ 465 (628)
..||||+...++. ...|+|||+|+| ..+.++|+|+++ ...|..|.+|.++++ |+.|.+.+|.|.
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~--~~~~l~~~vk~~--------~~~g~~s~~l~~l~~--G~~v~i~gP~G~ 95 (218)
T cd06196 28 FTPGQATEVAIDKPGWRDEKRPFTFTSLP--EDDVLEFVIKSY--------PDHDGVTEQLGRLQP--GDTLLIEDPWGA 95 (218)
T ss_pred CCCCCEEEEEeeCCCCCccccccccccCC--CCCeEEEEEEEc--------CCCCcHhHHHHhCCC--CCEEEEECCccc
Confidence 4689998877753 358999999998 358899999643 123677999999999 999999999999
Q ss_pred CCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 466 F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
|.++ .|+||||+|||||||+++++++...+.. .+++|+||+|+.+|++|.+||++|... ++..+
T Consensus 96 ~~~~---~~~vlia~GtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~----------~~~~~ 159 (218)
T cd06196 96 IEYK---GPGVFIAGGAGITPFIAILRDLAAKGKL---EGNTLIFANKTEKDIILKDELEKMLGL----------KFINV 159 (218)
T ss_pred eEec---CceEEEecCCCcChHHHHHHHHHhCCCC---ceEEEEEecCCHHHHhhHHHHHHhhcc----------eEEEE
Confidence 8753 5899999999999999999999875432 679999999999999999999998533 67778
Q ss_pred EecCCCCccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHH
Q 006868 546 FSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+||+... .|.+..+.+ +.+.+++.. ++.+|+|||+ .|.+++.+.|.+
T Consensus 160 ~s~~~~~-~~~~g~~~~--~~l~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~ 207 (218)
T cd06196 160 VTDEKDP-GYAHGRIDK--AFLKQHVTDFNQHFYVCGPP-PMEEAINGALKE 207 (218)
T ss_pred EcCCCCC-CeeeeEECH--HHHHHhcCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 8886542 333333321 122233333 5799999998 999998887755
No 54
>PRK06756 flavodoxin; Provisional
Probab=99.90 E-value=3.2e-23 Score=193.77 Aligned_cols=146 Identities=26% Similarity=0.313 Sum_probs=130.5
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC-ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD-ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~-~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
||+++|+|+|+||||+++|+.|++.+.+.|+.+++.++.+.+ ..++.+++.|||++||||.|.+|+++..|++.|....
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~ 80 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSID 80 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999999999987653 4577899999999999999999999999999885543
Q ss_pred CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
++|+++++||+|++.|+|||.+.+.+.+.|+++|++.+.+...++..+++...+.+..|.+++.++|
T Consensus 81 -----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 81 -----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred -----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999988877666777788888877654
No 55
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.90 E-value=8.9e-24 Score=214.04 Aligned_cols=178 Identities=19% Similarity=0.320 Sum_probs=141.6
Q ss_pred CCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCC
Q 006868 391 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 391 ~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 466 (628)
.|||++...+| . ..+|+|||+|.|....+.++|+|+. ...|.+|.||. .+++ |++|.+.+|.|.|
T Consensus 47 ~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f 115 (243)
T cd06216 47 RAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA---------QPDGLVSNWLVNHLAP--GDVVELSQPQGDF 115 (243)
T ss_pred CCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEECCceee
Confidence 58999877764 2 3579999999982147889999954 34589999998 4899 9999999999999
Q ss_pred CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
.++ +...++||||+||||||+++++++....... .+++||||+|+.+|.+|.+||+++.+.++++ ++++.
T Consensus 116 ~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~ 186 (243)
T cd06216 116 VLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPT---ADVVLLYYARTREDVIFADELRALAAQHPNL------RLHLL 186 (243)
T ss_pred ecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEEcCChhhhHHHHHHHHHHHhCCCe------EEEEE
Confidence 988 4468999999999999999999998776432 7899999999999999999999998665777 78888
Q ss_pred EecCCCCccchhhhHHHcHHHHHHHHh--CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 546 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+|++ ..++++.... +.+++. +++.+|+|||+ .|.+++++.|++
T Consensus 187 ~s~~-~~~g~~~~~~------l~~~~~~~~~~~vyvcGp~-~m~~~~~~~l~~ 231 (243)
T cd06216 187 YTRE-ELDGRLSAAH------LDAVVPDLADRQVYACGPP-GFLDAAEELLEA 231 (243)
T ss_pred EcCC-ccCCCCCHHH------HHHhccCcccCeEEEECCH-HHHHHHHHHHHH
Confidence 8876 3345554321 112222 25799999998 999998887765
No 56
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.90 E-value=1.6e-23 Score=212.44 Aligned_cols=171 Identities=22% Similarity=0.287 Sum_probs=137.2
Q ss_pred CCCHHHHHHhcCC----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC
Q 006868 390 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~ 465 (628)
..|||++...+|. ...|+|||+|.| ...+.++|+|+. .|.+|+||.++++ |++|.+.+|.|.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~-~~~~~l~l~v~~-----------~G~~s~~l~~l~~--Gd~v~i~gP~G~ 90 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVD-PEEGTITLLYKV-----------VGKGTRLLSELKA--GDELDVLGPLGN 90 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeecc-CCCCEEEEEEEE-----------ECcchHHHhcCCC--CCEEEEEecCCC
Confidence 4588888777764 468999999987 346789999853 3778999999999 999999999995
Q ss_pred -CCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006868 466 -LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 544 (628)
Q Consensus 466 -F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 544 (628)
|.+++...++||||+|||||||++++++..... .+++|||++|+.+|.+|++||++|... +.+
T Consensus 91 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~eL~~l~~~-----------~~~ 154 (246)
T cd06218 91 GFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERG-----IKVTVLLGFRSADDLFLVEEFEALGAE-----------VYV 154 (246)
T ss_pred CcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcC-----CceEEEEEccchhhhhhHHHHHhhCCc-----------EEE
Confidence 777655689999999999999999999987633 689999999999999999999988432 222
Q ss_pred EEecCC--CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 545 AFSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 545 a~Sr~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
++++. ..++||++.+.+.... ..+..||+|||+ .|.+++++.|.+.
T Consensus 155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp~-~mv~~~~~~L~~~ 202 (246)
T cd06218 155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGPE-PMLKAVAELAAER 202 (246)
T ss_pred -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECCH-HHHHHHHHHHHhc
Confidence 23332 2467899877765432 147899999998 9999999888763
No 57
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.89 E-value=1.6e-23 Score=223.65 Aligned_cols=184 Identities=17% Similarity=0.287 Sum_probs=140.0
Q ss_pred CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCC
Q 006868 391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 466 (628)
.||||+...+|. ...|+|||+|+| .++.++|+|+. ...|.+|+||. ++++ |++|.+.+|.|.|
T Consensus 34 ~pGQ~v~l~~~~~g~~~~R~ySi~s~p--~~~~l~i~vk~---------~~~G~~S~~l~~~l~~--Gd~v~v~gP~G~f 100 (352)
T TIGR02160 34 APGQHLTLRREVDGEELRRSYSICSAP--APGEIRVAVKK---------IPGGLFSTWANDEIRP--GDTLEVMAPQGLF 100 (352)
T ss_pred CCCCeEEEEEecCCcEeeeeccccCCC--CCCcEEEEEEE---------eCCCcchHHHHhcCCC--CCEEEEeCCceee
Confidence 689998887742 347999999998 46789999954 35689999996 7999 9999999999999
Q ss_pred CCC-C--CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcE
Q 006868 467 PRP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF 542 (628)
Q Consensus 467 ~lp-~--~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~ 542 (628)
.++ . ..+++||||+|||||||++++++....... .+++||||+|+++|++|.+||+++.+.++ ++ ++
T Consensus 101 ~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~~ 171 (352)
T TIGR02160 101 TPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPR---STFTLVYGNRRTASVMFAEELADLKDKHPQRF------HL 171 (352)
T ss_pred ecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcE------EE
Confidence 876 3 237999999999999999999998775433 78999999999999999999999987645 36 78
Q ss_pred EEEEecCCCCccchhhhHH-HcHHHHH-HHH--hCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 543 YVAFSRKQPQKVYVQHKML-EQSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 543 ~~a~Sr~~~~k~yVqd~l~-~~~~~v~-~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
+.++|++.....+.+..+. .....+. ++. ..+..+|+|||+ .|++.+++.|.+.
T Consensus 172 ~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~ 229 (352)
T TIGR02160 172 AHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQ-AMVDDAEQALTGL 229 (352)
T ss_pred EEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCH-HHHHHHHHHHHHc
Confidence 8889986532211111111 1111111 111 125789999998 9999999888763
No 58
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.89 E-value=1.9e-23 Score=210.36 Aligned_cols=179 Identities=19% Similarity=0.294 Sum_probs=142.1
Q ss_pred CCCHHHHHHhcC--CC--cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC
Q 006868 390 QMPIDWLVQLVP--PL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 464 (628)
Q Consensus 390 ~~p~~~l~~~lp--~~--~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g 464 (628)
..||||+...+| .. ..|+|||+|.| .+.+.++|+|.. ...|.+|.||.+ +++ |+.|.+.+|.|
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~-~~~~~l~l~v~~---------~~~G~~s~~l~~~l~~--Gd~v~i~gP~G 98 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSP-TQRGRVELTVKR---------VPGGEVSPYLHDEVKV--GDLLEVRGPIG 98 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCC-CCCCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEeCCce
Confidence 358999888775 22 24999999998 455789999954 346899999974 899 99999999999
Q ss_pred CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 543 (628)
Q Consensus 465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 543 (628)
.|.++ ....+++|||+||||||+++++++....... .+++++||+|+.+|.+|.+||.++.++++++ +++
T Consensus 99 ~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~~~~~~~~~------~~~ 169 (235)
T cd06217 99 TFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWP---VPFRLLYSARTAEDVIFRDELEQLARRHPNL------HVT 169 (235)
T ss_pred eeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEE
Confidence 99876 4468999999999999999999998876543 7899999999999999999999999875667 788
Q ss_pred EEEecCCC-----CccchhhhHHHcHHHHHHHH--hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 544 VAFSRKQP-----QKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 544 ~a~Sr~~~-----~k~yVqd~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
.++||+.. .++++.+.+.+. .+ ..+..+|||||+ .|.+++.+.|.+
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~v~icGp~-~m~~~v~~~l~~ 222 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADLIAE------LVPPLAGRRVYVCGPP-AFVEAATRLLLE 222 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHHHHh------hCCCccCCEEEEECCH-HHHHHHHHHHHH
Confidence 88888622 234554433221 11 236899999998 999998887765
No 59
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.89 E-value=2.9e-23 Score=206.51 Aligned_cols=174 Identities=18% Similarity=0.281 Sum_probs=138.0
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCC
Q 006868 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~ 465 (628)
..|||++...+|. ...|+|||+|.| ...+.++|+|+. .|.+|.+|. ++++ |+.|.+.+|.|.
T Consensus 23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~~~l~l~vk~-----------~G~~t~~l~~~l~~--G~~v~i~gP~G~ 88 (216)
T cd06198 23 HRAGQFAFLRFDASGWEEPHPFTISSAP-DPDGRLRFTIKA-----------LGDYTRRLAERLKP--GTRVTVEGPYGR 88 (216)
T ss_pred cCCCCEEEEEeCCCCCCCCCCcEEecCC-CCCCeEEEEEEe-----------CChHHHHHHHhCCC--CCEEEEECCCCC
Confidence 3689998888774 578999999998 455799999943 377899998 8999 999999999999
Q ss_pred CCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 466 F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
|.++....+++|||+||||||+++++++....... .+++|+||+|+.+|++|.++|+++.+. .++ ++++.
T Consensus 89 ~~~~~~~~~~vlia~GtGiap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~-~~~------~~~~~ 158 (216)
T cd06198 89 FTFDDRRARQIWIAGGIGITPFLALLEALAARGDA---RPVTLFYCVRDPEDAVFLDELRALAAA-AGV------VLHVI 158 (216)
T ss_pred CcccccCceEEEEccccCHHHHHHHHHHHHhcCCC---ceEEEEEEECCHHHhhhHHHHHHHHHh-cCe------EEEEE
Confidence 99883378999999999999999999998876533 789999999999999999999999988 355 67766
Q ss_pred EecCCCCccchhhhHHHcHHHHHHHH--hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 546 FSRKQPQKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 546 ~Sr~~~~k~yVqd~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
.++.+. .......+. ... ..+..+|+|||+ .|.+++++.|.+
T Consensus 159 ~~~~~~-~~~~~~~~~-------~~~~~~~~~~vyicGp~-~m~~~v~~~l~~ 202 (216)
T cd06198 159 DSPSDG-RLTLEQLVR-------ALVPDLADADVWFCGPP-GMADALEKGLRA 202 (216)
T ss_pred eCCCCc-ccchhhhhh-------hcCCCcCCCeEEEECcH-HHHHHHHHHHHH
Confidence 665432 212222210 111 237899999998 999998888765
No 60
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.89 E-value=4.2e-23 Score=211.34 Aligned_cols=173 Identities=19% Similarity=0.231 Sum_probs=137.5
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 468 (628)
..||||+...+|...+|+|||++.+ ++.++|+|+ +.|.+|+||.++++ |++|.+.+|.|. |.+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik-----------~~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~ 96 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIR-----------RVGKVTDEIFNLKE--GDKLFLRGPYGNGFPV 96 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEE-----------eCCchhhHHHhCCC--CCEEEEECCCCCCccc
Confidence 4699999888887777999999874 578999983 23899999999999 999999999997 777
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+ ...+|+||||+|||||||++++++....... ..+++||||+|+.+|++|++||++|.+. . .+.++++
T Consensus 97 ~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~--~~~v~L~~g~r~~~~l~~~~el~~~~~~-~--------~~~~~~~ 165 (263)
T PRK08221 97 DTYKGKELIVVAGGTGVAPVKGLMRYFYENPQE--IKSLDLILGFKNPDDILFKEDLKRWREK-I--------NLILTLD 165 (263)
T ss_pred CccCCccEEEEcccccHHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHhhc-C--------cEEEEec
Confidence 6 5567999999999999999999998764321 2689999999999999999999999876 2 3445556
Q ss_pred cCCC----CccchhhhHHHcHHHHHHHHh--CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 548 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~----~k~yVqd~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+... ..++|++.+.+. .+. .+..+|+|||+ .|.+++.+.|.+
T Consensus 166 ~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp~-~mv~~~~~~L~~ 213 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGPP-IMMKFTVLEFLK 213 (263)
T ss_pred CCCCCCccCccccChhhHhc------cCCCcCCeEEEEECCH-HHHHHHHHHHHH
Confidence 5332 346676554432 111 36789999998 999998888765
No 61
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.89 E-value=5.1e-23 Score=206.97 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=143.1
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F 466 (628)
..|||++...+|. ...|+|||+|++ ..++.++|+|+. ...|.+|.||+++++ |++|.+.+|.|.|
T Consensus 29 ~~pGq~v~l~~~~~~~~~~R~ysi~s~~-~~~~~~~~~v~~---------~~~G~~s~~l~~~~~--G~~v~i~gP~G~~ 96 (234)
T cd06183 29 LPVGQHVELKAPDDGEQVVRPYTPISPD-DDKGYFDLLIKI---------YPGGKMSQYLHSLKP--GDTVEIRGPFGKF 96 (234)
T ss_pred CCcccEEEEEecCCCcccccccccccCC-CcCCEEEEEEEE---------CCCCcchhHHhcCCC--CCEEEEECCccce
Confidence 3689998888875 468999999998 355689999954 346999999999999 9999999999999
Q ss_pred CCC-CCC-CCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcccCCCCcEE
Q 006868 467 PRP-PPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFY 543 (628)
Q Consensus 467 ~lp-~~~-~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~~ 543 (628)
.++ ... .++||||+||||||+++++++....... ..+++|+||+|+.++.+|.+||+++.+.+ +++ ++.
T Consensus 97 ~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~--~~~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~ 168 (234)
T cd06183 97 EYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPED--KTKISLLYANRTEEDILLREELDELAKKHPDRF------KVH 168 (234)
T ss_pred eecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCc--CcEEEEEEecCCHHHhhhHHHHHHHHHhCcccE------EEE
Confidence 877 444 7999999999999999999998765311 27899999999999999999999998763 456 778
Q ss_pred EEEecCCC----CccchhhhHHHcHHHHHHHHh----CCCEEEEeCCCCCCHH-HHHHHHHH
Q 006868 544 VAFSRKQP----QKVYVQHKMLEQSQRIWNLLL----SKASIYVAGSATKMPS-DVWSTFEE 596 (628)
Q Consensus 544 ~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~----~~~~iyvCG~~~~M~~-~v~~~L~~ 596 (628)
+++++.+. ..++|++.+.+. .+. .+..+|+|||. .|.+ ++++.|.+
T Consensus 169 ~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~~~~icGp~-~~~~~~~~~~l~~ 223 (234)
T cd06183 169 YVLSRPPEGWKGGVGFITKEMIKE------HLPPPPSEDTLVLVCGPP-PMIEGAVKGLLKE 223 (234)
T ss_pred EEEcCCCcCCccccceECHHHHHH------hCCCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence 88887543 246666543322 222 36789999998 9998 88877754
No 62
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.89 E-value=8.6e-23 Score=202.21 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=134.2
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccc-ccccHHhh-CcCCCCCceEEEEeecCCCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA-GLDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~-~l~~~~G~~v~i~~~~g~F~ 467 (628)
..||||+...+|....|+|||+|.| .+.+.++|+|+.+ .. +.+|.||. .+++ |++|.+.+|.|.|.
T Consensus 26 ~~pGQ~~~l~~~~~~~r~ySi~s~~-~~~~~l~~~v~~~---------~~g~~~s~~l~~~~~~--Gd~v~i~gP~g~f~ 93 (211)
T cd06185 26 FEPGAHIDVHLPNGLVRQYSLCGDP-ADRDRYRIAVLRE---------PASRGGSRYMHELLRV--GDELEVSAPRNLFP 93 (211)
T ss_pred CCCCceEEEEcCCCCceeeeccCCC-CCCCEEEEEEEec---------cCCCchHHHHHhcCCC--CCEEEEcCCccCCc
Confidence 4689999888887778999999998 3458899999542 33 34799996 5899 99999999999998
Q ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 468 lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
++....|+||||+||||||+++++++..... .+++|+||+|+.+|.+|.++|+++. . . .+.+.++
T Consensus 94 ~~~~~~~~v~ia~GtGiap~~~il~~~~~~~-----~~v~l~~~~r~~~~~~~~~~l~~~~-~-~--------~~~~~~~ 158 (211)
T cd06185 94 LDEAARRHLLIAGGIGITPILSMARALAARG-----ADFELHYAGRSREDAAFLDELAALP-G-D--------RVHLHFD 158 (211)
T ss_pred CCCCCCcEEEEeccchHhHHHHHHHHHHhCC-----CCEEEEEEeCCCcchhHHHHHhhhc-C-C--------cEEEEEC
Confidence 8744679999999999999999999987632 6899999999999999999999887 2 3 3444556
Q ss_pred cCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 548 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+.. ...++++.+... .++..+|+|||+ .|.+++++.|.+
T Consensus 159 ~~~-~~~~~~~~~~~~--------~~~~~vyicGp~-~m~~~~~~~l~~ 197 (211)
T cd06185 159 DEG-GRLDLAALLAAP--------PAGTHVYVCGPE-GMMDAVRAAAAA 197 (211)
T ss_pred CCC-CccCHHHHhccC--------CCCCEEEEECCH-HHHHHHHHHHHH
Confidence 543 234444444321 246899999998 999998877765
No 63
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.89 E-value=8e-23 Score=206.67 Aligned_cols=182 Identities=21% Similarity=0.307 Sum_probs=140.2
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCC
Q 006868 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~ 465 (628)
..|||++...+|. ..+|+|||+|.+ ..+.++|+|+. ...|.+|.||. ++++ |+.|.+.+|.|.
T Consensus 33 ~~~GQ~v~l~~~~~g~~~~r~ysi~s~~--~~~~l~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~ 99 (241)
T cd06214 33 YRPGQFLTLRVPIDGEEVRRSYSICSSP--GDDELRITVKR---------VPGGRFSNWANDELKA--GDTLEVMPPAGR 99 (241)
T ss_pred cCCCCeEEEEeecCCCeeeeeeeecCCC--CCCcEEEEEEE---------cCCCccchhHHhccCC--CCEEEEeCCccc
Confidence 3689998888862 368999999987 33489999854 35699999996 7999 999999999999
Q ss_pred CCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcE
Q 006868 466 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF 542 (628)
Q Consensus 466 F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~ 542 (628)
|.++ + ...++||||+|||||||+++++++...... .+++|+||+|+.+|++|.+||+++.+.++ ++ ++
T Consensus 100 ~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~ 170 (241)
T cd06214 100 FTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPA---SRVTLVYGNRTEASVIFREELADLKARYPDRL------TV 170 (241)
T ss_pred cccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhCcCce------EE
Confidence 9888 4 478999999999999999999998875433 78999999999999999999999987644 55 67
Q ss_pred EEEEecCCCC----ccchhhhHHHcHHHHHHHH--hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 543 YVAFSRKQPQ----KVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 543 ~~a~Sr~~~~----k~yVqd~l~~~~~~v~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
..++|+++.. .+.+...+... .+-+++ .++..||+|||+ .|.+.+.+.|.+
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~v~icGp~-~mv~~v~~~l~~ 227 (241)
T cd06214 171 IHVLSREQGDPDLLRGRLDAAKLNA--LLKNLLDATEFDEAFLCGPE-PMMDAVEAALLE 227 (241)
T ss_pred EEEecCCCCCcccccCccCHHHHHH--hhhhhcccccCcEEEEECCH-HHHHHHHHHHHH
Confidence 7788875442 22333221111 111111 236899999998 899988877755
No 64
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.89 E-value=7.8e-23 Score=207.95 Aligned_cols=176 Identities=19% Similarity=0.276 Sum_probs=137.9
Q ss_pred CCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCC
Q 006868 391 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 391 ~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F 466 (628)
-||||+...++.- ..|.|||+|+| ..++.+.|+|++ ...|..|+||+ ++++ ||+|.+..|.|.|
T Consensus 36 ~pGQ~i~v~l~~~~~~~~R~YSl~s~p-~~~~~~~isVk~---------~~~G~~S~~Lh~~lk~--Gd~l~v~~P~G~F 103 (266)
T COG1018 36 EPGQYITVGLPNGGEPLLRAYSLSSAP-DEDSLYRISVKR---------EDGGGGSNWLHDHLKV--GDTLEVSAPAGDF 103 (266)
T ss_pred CCCCeEEEEecCCCceeeEEEEeccCC-CCCceEEEEEEE---------eCCCcccHHHHhcCCC--CCEEEEecCCCCc
Confidence 5899998888865 79999999999 455689999844 44599999998 8999 9999999999999
Q ss_pred CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
.++ .+..|++|||+|||||||+||++.....+. .++.|+|++|++++..|++| +.+.+++++.. .+...
T Consensus 104 ~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~----~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~-----~~~~~ 173 (266)
T COG1018 104 VLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP----ADVVLVHAARTPADLAFRDE-LELAAELPNAL-----LLGLY 173 (266)
T ss_pred cCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC----CCEEEEEecCChhhcchhhH-HHHHhhCCCCe-----eEEEE
Confidence 998 566799999999999999999999887652 57999999999999999999 88887766542 44444
Q ss_pred EecCCCCccchh-hhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 546 FSRKQPQKVYVQ-HKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 546 ~Sr~~~~k~yVq-d~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
+++... .+|.. .++.. .+.. +..+|+|||. +|.++|+..|.+.
T Consensus 174 ~~~~~~-~g~~~~~~l~~-------~~~~~~r~~y~CGp~-~fm~av~~~l~~~ 218 (266)
T COG1018 174 TERGKL-QGRIDVSRLLS-------AAPDGGREVYLCGPG-PFMQAVRLALEAL 218 (266)
T ss_pred EecCCc-cccccHHHHhc-------cCCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 442221 22221 11111 2222 3899999998 9999999888664
No 65
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.88 E-value=6.4e-23 Score=214.83 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=134.7
Q ss_pred CCHHHHHHhcC-C-----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC
Q 006868 391 MPIDWLVQLVP-P-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 464 (628)
Q Consensus 391 ~p~~~l~~~lp-~-----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g 464 (628)
.|+|++...++ . ...|+|||+|+| ...+.++|+|+. ...|.+|+||.++++ ||+|.+.+|.+
T Consensus 83 ~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p-~~~~~le~~IK~---------~~~G~~S~~L~~lk~--Gd~v~v~GP~f 150 (325)
T PTZ00274 83 KPCSTLQACYKYGVQPMDQCQRFYTPVTAN-HTKGYFDIIVKR---------KKDGLMTNHLFGMHV--GDKLLFRSVTF 150 (325)
T ss_pred CCccEEEEEEecCCCCCCEEEEeeecCCCC-CCCCeEEEEEEE---------cCCCcccHHHhcCCC--CCEEEEeCCee
Confidence 47777653333 1 247999999998 456899999944 567999999999999 99999999877
Q ss_pred CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCC---CCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCC
Q 006868 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS---GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKG 539 (628)
Q Consensus 465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~---~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~ 539 (628)
.|.++ +..+|+||||+|||||||++++++....... ....+++|+||+|+.+|++|++||+++.+.++ ++
T Consensus 151 ~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f----- 225 (325)
T PTZ00274 151 KIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRF----- 225 (325)
T ss_pred ecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcE-----
Confidence 66555 4457999999999999999999988765311 01258999999999999999999999998766 46
Q ss_pred CcEEEEEecCCC------CccchhhhH-HHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHH
Q 006868 540 GGFYVAFSRKQP------QKVYVQHKM-LEQSQRIWNLLL-SKASIYVAGSATKMPSDVWST 593 (628)
Q Consensus 540 ~~~~~a~Sr~~~------~k~yVqd~l-~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~ 593 (628)
+++.+.|+... ..++|.+.+ .+.... .. .+..+|+|||+ .|.+.|...
T Consensus 226 -~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~----~~~~~~~vylCGPp-~Mm~av~~~ 281 (325)
T PTZ00274 226 -KVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPA----PEEKKKIIMLCGPD-QLLNHVAGT 281 (325)
T ss_pred -EEEEEeCCCCcccCCCCCCCccCHHHHHHhcCC----CccCCcEEEEeCCH-HHHHHhcCC
Confidence 78888886421 346666543 221100 11 13579999998 998877543
No 66
>PRK09271 flavodoxin; Provisional
Probab=99.88 E-value=5.1e-22 Score=187.95 Aligned_cols=140 Identities=21% Similarity=0.223 Sum_probs=119.6
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc----cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
|+++|+|+|+|||||++|+.|++.|.+.|+.+.+.++++.+. .++.+++.+||++||+|.|.+|+++..|+++|..
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~ 80 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE 80 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHH
Confidence 579999999999999999999999999999998888876553 3455789999999999999999999999999976
Q ss_pred ccCcccccCCcEEEEEecCCcCh--hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCC-chhhHHHHHHHHHHHH
Q 006868 83 KSLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSG-YEGALDPWMRSLWRRL 156 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g-~~~~~~~W~~~l~~~l 156 (628)
.. .++++++|||+||+.| ++||.+++.++++|+.. .+.+.++....+. +.+.+.+|.+++++.+
T Consensus 81 ~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 81 TI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred Hh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHHHHHHHHh
Confidence 43 4678999999999999 68999999999999764 3556777654332 3588999999999888
No 67
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.88 E-value=1.1e-22 Score=211.79 Aligned_cols=193 Identities=17% Similarity=0.137 Sum_probs=139.4
Q ss_pred CCHHHHHHhcCC-------CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeec
Q 006868 391 MPIDWLVQLVPP-------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK 463 (628)
Q Consensus 391 ~p~~~l~~~lp~-------~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~ 463 (628)
.||||+...++. ...|+||++|+| .+.+.++|+|+.+.-.........|.+|+||..+++ ||.|.+.+|.
T Consensus 65 ~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~-~~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~ 141 (300)
T PTZ00319 65 PIGQHIVFRCDCTTPGKPETVQHSYTPISSD-DEKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL--GDKIEMRGPV 141 (300)
T ss_pred ccceEEEEEEEeCCCCccceEEeeeccCCCc-ccCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC--CCEEEEEccc
Confidence 488988777652 247999999998 467889999976421111111246999999999999 9999999999
Q ss_pred CCCCCC-C---------------CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHh
Q 006868 464 GSLPRP-P---------------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 527 (628)
Q Consensus 464 g~F~lp-~---------------~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~ 527 (628)
|.|.+. + ...|++|||+|||||||++++++....... ..+++|+||+|+.+|.+|.++|+++
T Consensus 142 G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~--~~~i~liyg~r~~~dl~~~~eL~~~ 219 (300)
T PTZ00319 142 GKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKED--RTKVFLVYANQTEDDILLRKELDEA 219 (300)
T ss_pred eeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHH
Confidence 998543 1 124899999999999999999998765321 2579999999999999999999996
Q ss_pred HhcCCCcccCCCCcEEEEEecCCC-----CccchhhhHHHcH-HHHH-H-HHhCCCEEEEeCCCCCCHH-HHHHHHHH
Q 006868 528 SLNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQS-QRIW-N-LLLSKASIYVAGSATKMPS-DVWSTFEE 596 (628)
Q Consensus 528 ~~~~g~l~~~~~~~~~~a~Sr~~~-----~k~yVqd~l~~~~-~~v~-~-~l~~~~~iyvCG~~~~M~~-~v~~~L~~ 596 (628)
.+. +++ +++.+.++++. ..++|+..+.+.. ...- + ...++..+|+|||+ .|.+ .+.+.|.+
T Consensus 220 ~~~-~~~------~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~vyiCGp~-~mv~~~~~~~L~~ 289 (300)
T PTZ00319 220 AKD-PRF------HVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQNSGIKKVMALMCGPP-PMLQMAVKPNLEK 289 (300)
T ss_pred hhC-CCE------EEEEEECCCCCCCcccccceeCHHHHHhhcCCccccccccCCeEEEEECCH-HHHHHHHHHHHHH
Confidence 554 777 78888887432 3567776443321 1000 0 00034789999998 8887 45656644
No 68
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.88 E-value=1e-22 Score=208.15 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=135.9
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 468 (628)
..|||++...+|...+|+|||+|. +++.++|+|+ +.|.+|++|.++++ ||+|.+.+|.|. |.+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~---~~~~l~~~Vk-----------~~G~~S~~L~~l~~--Gd~v~i~gP~G~~f~~ 94 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGI---GEGYIDLTIR-----------RVGKVTDEVFTLKE--GDNLFLRGPYGNGFDV 94 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCC---CCCeEEEEEE-----------eCchhhHHHHcCCC--CCEEEEecCCCCCccc
Confidence 469999988888777899999985 3578999983 34899999999999 999999999997 777
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+ ...+|++|||+|||||||+++++++...... ..+++||||+|+.+|++|.+||++|.+. .++ ..+++
T Consensus 95 ~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~--~~~v~L~~~~r~~~~~~~~~eL~~l~~~-~~~--------~~~~~ 163 (261)
T TIGR02911 95 DNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE--IKSLNLILGFKTPDDILFKEDIAEWKGN-INL--------TLTLD 163 (261)
T ss_pred CccCCceEEEEecccCcHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHHhc-CcE--------EEEEc
Confidence 6 5568999999999999999999988664321 2689999999999999999999999876 333 33444
Q ss_pred cCCC----CccchhhhHHHcHHHHHHHHh--CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 548 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~----~k~yVqd~l~~~~~~v~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++.+ ..++|++.+.+. .+. .+..+|+|||+ .|.+++++.|.+
T Consensus 164 ~~~~~~~~~~g~v~~~l~~~------~~~~~~~~~v~lCGp~-~mv~~~~~~L~~ 211 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPEL------TLKDIEEVQAIVVGPP-IMMKFTVQELLK 211 (261)
T ss_pred CCCCCCcCCeeccCHhHHhc------cCCCccceEEEEECCH-HHHHHHHHHHHH
Confidence 4322 345666554432 111 26789999998 999998887765
No 69
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.87 E-value=7.4e-22 Score=182.42 Aligned_cols=138 Identities=32% Similarity=0.402 Sum_probs=123.8
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCC-hhHHHHHHHHHhccCcc
Q 006868 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP-DSMKVFWRFLLQKSLSK 87 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p-~~~~~F~~~L~~~~~~~ 87 (628)
|+|+|+|+||||+++|+.|++.+.+.|+.+.+.++++.++.++.+++.+||++|||+.|.+| ++++.|+++|....
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~--- 77 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDID--- 77 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCC---
Confidence 58999999999999999999999999999999999999888899999999999999989999 99999999986543
Q ss_pred cccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHH
Q 006868 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l 152 (628)
++|++++|||+|++.|+ ||.+++.+++.|+++|++++.+...++...++...+.+++|.++|
T Consensus 78 --~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 78 --LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKDL 139 (140)
T ss_pred --CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHHh
Confidence 78999999999999998 999999999999999999999888887776555666677777654
No 70
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.87 E-value=5.5e-22 Score=201.77 Aligned_cols=165 Identities=21% Similarity=0.299 Sum_probs=132.8
Q ss_pred CCCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-
Q 006868 390 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS- 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~- 465 (628)
..||||+...+|.. .+|+|||+|+| ++.++|+|+. .|..|++|.++++ |++|.+.+|.|.
T Consensus 32 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~--G~~v~i~gP~G~~ 95 (250)
T PRK00054 32 MKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKE--GDELDIRGPLGNG 95 (250)
T ss_pred CCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCC--CCEEEEEcccCCC
Confidence 36899988877754 68999999997 5789999843 4889999999999 999999999986
Q ss_pred CCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 466 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 466 F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
|.++....|+||||+|||||||++++++....+ .+++|+|++|+.+|++|.+||+++. ++++.
T Consensus 96 f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~------------~~~~~ 158 (250)
T PRK00054 96 FDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG-----VEVTTVLGARTKDEVIFEEEFAKVG------------DVYVT 158 (250)
T ss_pred CCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC-----CcEEEEEEcCCHHHhhhHHHHHhcC------------CEEEE
Confidence 887655579999999999999999999987644 5799999999999999999999832 12222
Q ss_pred EecCC--CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 546 FSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 546 ~Sr~~--~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+++. ..++||++.+.+.. .....||+|||+ .|.+++.+.|.+
T Consensus 159 -~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp~-~m~~~v~~~l~~ 202 (250)
T PRK00054 159 -TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGPE-IMMKKVVEILKE 202 (250)
T ss_pred -ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCCH-HHHHHHHHHHHH
Confidence 2222 24678988776542 245689999998 999999888876
No 71
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.87 E-value=5.1e-22 Score=205.28 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=132.4
Q ss_pred CCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceE-EEEeecCCCCC
Q 006868 391 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 468 (628)
Q Consensus 391 ~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l 468 (628)
.||||+...++.. .+|+|||+|++ .+++.++|+|+. .|..|++|.++++ |++| .+.+|.|+|..
T Consensus 29 ~pGQfv~l~~~~~~~~rpySias~~-~~~~~i~l~vk~-----------~G~~T~~L~~l~~--Gd~v~~i~GP~G~~~~ 94 (281)
T PRK06222 29 KPGQFVIVRIDEKGERIPLTIADYD-REKGTITIVFQA-----------VGKSTRKLAELKE--GDSILDVVGPLGKPSE 94 (281)
T ss_pred CCCeEEEEEeCCCCCceeeEeeEEc-CCCCEEEEEEEe-----------CCcHHHHHhcCCC--CCEEeeEEcCCCCCcc
Confidence 5999998887643 46899999987 456789999843 3899999999999 9999 79999998765
Q ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868 469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 548 (628)
Q Consensus 469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 548 (628)
.+..+++||||+|+||||+++++++....+ .+++++||+|+++|++|.+||+++... +++ .+.
T Consensus 95 ~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~d~~~~~el~~~~~~-----------~~v-~~~ 157 (281)
T PRK06222 95 IEKFGTVVCVGGGVGIAPVYPIAKALKEAG-----NKVITIIGARNKDLLILEDEMKAVSDE-----------LYV-TTD 157 (281)
T ss_pred cCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-----CeEEEEEecCCHHHhhcHHHHHhhCCe-----------EEE-EcC
Confidence 533579999999999999999999876543 579999999999999999999887654 122 222
Q ss_pred CCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 549 KQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 549 ~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
+.. .+++|++.+.+.... ..+...||+|||+ .|.+.+.+.+.+.
T Consensus 158 d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~ 203 (281)
T PRK06222 158 DGSYGRKGFVTDVLKELLES----GKKVDRVVAIGPV-IMMKFVAELTKPY 203 (281)
T ss_pred CCCcCcccchHHHHHHHhhc----CCCCcEEEEECCH-HHHHHHHHHHHhc
Confidence 322 467788766543211 1114579999998 9999998877553
No 72
>PRK12359 flavodoxin FldB; Provisional
Probab=99.86 E-value=4.7e-21 Score=181.88 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=119.8
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
|++.|+|+|.|||||.+|+.|++.+. +..+++.+++++++.++..++.+||++||||.|++|+++..|+..|....
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg--~~~v~v~~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~d-- 76 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIG--EELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLN-- 76 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhC--CCeEEEEEcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhhCC--
Confidence 57999999999999999999999873 12378999999988899999999999999999999999999999886654
Q ss_pred ccccCCcEEEEEecCCc-Ch-hHHHHHHHHHHHHHHhcCCeEeecc-----------e-----------eeeCCCC-CCc
Q 006868 87 KQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAVVER-----------G-----------LGDDQHP-SGY 141 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds-~y-~~f~~a~~~l~~~L~~lGa~~v~~~-----------~-----------~~d~~~~-~g~ 141 (628)
|+|+++|+||+||+ .| .+||.+++.+.++|++.||+.+... . -+|+.+. +-.
T Consensus 77 ---l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD~~nq~~~t 153 (172)
T PRK12359 77 ---LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALDEVNQYDLS 153 (172)
T ss_pred ---CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEcCCCchhhh
Confidence 89999999999998 68 5899999999999999999976211 1 1222211 125
Q ss_pred hhhHHHHHHHHHHHHH
Q 006868 142 EGALDPWMRSLWRRLH 157 (628)
Q Consensus 142 ~~~~~~W~~~l~~~l~ 157 (628)
++.++.|+++|.+.+.
T Consensus 154 ~~ri~~W~~~~~~~~~ 169 (172)
T PRK12359 154 DERIQQWCEQILLEMA 169 (172)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7889999999887664
No 73
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.86 E-value=7.1e-22 Score=200.70 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=131.5
Q ss_pred CCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceE-EEEeecCCCCC
Q 006868 391 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLPR 468 (628)
Q Consensus 391 ~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~l 468 (628)
.||||+...++. ...|+|||+|.| .+.+.++|+|+ +.|..|.+|.++++ |++| .+.+|.|.|.+
T Consensus 28 ~pGQf~~l~~~~~~~~~pySi~s~~-~~~~~~~~~vk-----------~~G~~t~~l~~l~~--G~~v~~i~gP~G~~~~ 93 (248)
T cd06219 28 KPGQFVIVRADEKGERIPLTIADWD-PEKGTITIVVQ-----------VVGKSTRELATLEE--GDKIHDVVGPLGKPSE 93 (248)
T ss_pred CCCcEEEEEcCCCCCccceEeEEEc-CCCCEEEEEEE-----------eCCchHHHHHhcCC--CCEeeeeecCCCCCee
Confidence 589998777653 357999999987 35678999983 23888999999999 9999 69999998765
Q ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868 469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 548 (628)
Q Consensus 469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 548 (628)
.+...|+||||+||||||+++++++....+ .+++||||+|+.+|++|.+||+++.++ ++++ ++
T Consensus 94 ~~~~~~~lliagG~GiaP~~~~l~~~~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~-----------~~~~-~~ 156 (248)
T cd06219 94 IENYGTVVFVGGGVGIAPIYPIAKALKEAG-----NRVITIIGARTKDLVILEDEFRAVSDE-----------LIIT-TD 156 (248)
T ss_pred cCCCCeEEEEeCcccHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHHhhcCe-----------EEEE-eC
Confidence 533579999999999999999999976643 589999999999999999999998654 2222 33
Q ss_pred CCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 549 KQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 549 ~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+.. ..+|+++.+.+.... ......||+|||+ .|.+.+.+.|.+
T Consensus 157 ~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGP~-~m~~~~~~~l~~ 201 (248)
T cd06219 157 DGSYGEKGFVTDPLKELIES----GEKVDLVIAIGPP-IMMKAVSELTRP 201 (248)
T ss_pred CCCCCccccchHHHHHHHhc----cCCccEEEEECCH-HHHHHHHHHHHH
Confidence 322 356777655443211 1224689999998 999998887764
No 74
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.86 E-value=1.3e-21 Score=198.65 Aligned_cols=176 Identities=21% Similarity=0.295 Sum_probs=145.3
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP 469 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp 469 (628)
..||||+...+|....|+|||+|.+ .+.+.++|.|++ ...|.+|.++..+++ ||.|.+.||.|++.+.
T Consensus 36 ~~pGQfv~l~~~~~~~~P~si~~~~-~~~g~~~l~i~~---------~~~G~~T~~i~~~k~--gd~i~v~GP~G~~~~~ 103 (252)
T COG0543 36 FKPGQFVMLRVPGGVRRPYSLASAP-DDKGELELHIRV---------YEVGKVTKYIFGLKE--GDKIRVRGPLGNGFLR 103 (252)
T ss_pred cCCCcEEEEEeCCCcEEEeeeccCC-CcCCcEEEEEEE---------EeCChHHHHHhhccC--CCEEEEEcCCCCCccc
Confidence 4799999999999999999999998 456777777754 467999999999999 9999999999987666
Q ss_pred -CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe-
Q 006868 470 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS- 547 (628)
Q Consensus 470 -~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S- 547 (628)
+..+|+++||+|||+||+++++++....+ . ..+++++||.|+++|+++.+||+++... +++.+.+
T Consensus 104 ~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~--~~~V~~~~G~~~~~dl~~~~el~~~~~~----------~~~~~~~~ 170 (252)
T COG0543 104 EKIGKPVLLIAGGTGIAPLYAIAKELKEKG-D--ANKVTLLYGARTAKDLLLLDELEELAEK----------EVHPVTDD 170 (252)
T ss_pred cccCCcEEEEecccCHhHHHHHHHHHHhcC-C--CceEEEEEeccChhhcccHHHHHHhhcC----------cEEEEECC
Confidence 67788999999999999999999998865 2 3789999999999999999999999875 3444444
Q ss_pred cCCCCccch-hhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 548 RKQPQKVYV-QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 548 r~~~~k~yV-qd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
.....+++| ++.+.+..+. +...+|+|||+ .|.+.+.+.+.+-
T Consensus 171 ~~~G~~G~v~~~~~~~~~~~------~~~~v~~cGp~-~M~~~v~~~~~~~ 214 (252)
T COG0543 171 GWKGRKGFVTTDVLKELLDL------EVDDVYICGPP-AMVKAVREKLKEY 214 (252)
T ss_pred CCCccCcceeHHHHhhhccc------cCCEEEEECCH-HHHHHHHHHHHhc
Confidence 122257888 7777665221 46899999998 9999888777663
No 75
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.86 E-value=1.6e-21 Score=196.32 Aligned_cols=164 Identities=22% Similarity=0.286 Sum_probs=130.0
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-CCC
Q 006868 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F~l 468 (628)
..||||+...+|....|+|||+|+| +.++|+|+ +.|.+|+||.++++ |++|.+.+|.|. |.+
T Consensus 24 ~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~-----------~~G~~s~~L~~l~~--Gd~v~i~gP~G~~f~~ 86 (233)
T cd06220 24 FKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVK-----------KVGEATSALHDLKE--GDKLGIRGPYGNGFEL 86 (233)
T ss_pred CCCCceEEEEeCCCCcceeEEecCC----CeEEEEEE-----------ecChHHHHHHhcCC--CCEEEEECcCCCCccC
Confidence 4699999888877667999999997 78999983 24889999999999 999999999997 776
Q ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006868 469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 548 (628)
Q Consensus 469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 548 (628)
+ .+|+||||+|||||||++++++.... .+++|+||+|+++|++|.+||+++ . ++.+..+.
T Consensus 87 ~--~~~~vliAgGtGitP~~sil~~~~~~------~~i~l~~~~r~~~d~~~~~eL~~~----~--------~~~~~~~~ 146 (233)
T cd06220 87 V--GGKVLLIGGGIGIAPLAPLAERLKKA------ADVTVLLGARTKEELLFLDRLRKS----D--------ELIVTTDD 146 (233)
T ss_pred C--CCeEEEEecCcChHHHHHHHHHHHhc------CCEEEEEecCChHHChhHHHHhhC----C--------cEEEEEeC
Confidence 5 57999999999999999999988764 579999999999999999999871 2 22222221
Q ss_pred -CCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 549 -KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 549 -~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
....++++++.+.+.. ......+|+|||+ .|.+.+.+.|.+.
T Consensus 147 ~~~~~~g~~~~~l~~~~------~~~~~~vyicGp~-~m~~~~~~~L~~~ 189 (233)
T cd06220 147 GSYGFKGFVTDLLKELD------LEEYDAIYVCGPE-IMMYKVLEILDER 189 (233)
T ss_pred CCCcccceehHHHhhhc------ccCCCEEEEECCH-HHHHHHHHHHHhc
Confidence 1123567777655432 1235689999998 9999988888653
No 76
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.85 E-value=2.3e-21 Score=196.40 Aligned_cols=171 Identities=17% Similarity=0.159 Sum_probs=131.3
Q ss_pred CCCHHHHHHhcC---CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868 390 QMPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 390 ~~p~~~l~~~lp---~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F 466 (628)
..||||+...+| ....|+|||+|.| ...+.++|+|+. .|..|+||.++++ |++|.+.+|.|.|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~-~~~~~l~l~i~~-----------~G~~t~~l~~~~~--G~~l~i~gP~G~~ 90 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVD-PEEGTISLLVEI-----------RGPKTKLIAELKP--GEKLDVMGPLGNG 90 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecC-CCCCEEEEEEEE-----------cCchHHHHHhCCC--CCEEEEEccCCCC
Confidence 358999887774 4568999999997 456889999842 4889999999999 9999999999987
Q ss_pred CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006868 467 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 467 ~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
.+. +...++||||+|||||||++++++..... .+++||||+|+.+|.+|.+||+++. . .+ ..
T Consensus 91 ~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~-~----------~~-~~ 153 (243)
T cd06192 91 FEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG-----NKVTVLAGAKKAKEEFLDEYFELPA-D----------VE-IW 153 (243)
T ss_pred CccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC-----CeEEEEEecCcHHHHHHHHHHHhhc-C----------eE-EE
Confidence 655 44689999999999999999999987653 6899999999999999999998762 1 22 22
Q ss_pred EecCCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHH
Q 006868 546 FSRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV 598 (628)
Q Consensus 546 ~Sr~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il 598 (628)
.+.++. ..++|++... . .. ..++..+|+|||+ .|.+.+++.|.+..
T Consensus 154 ~~~~~~~~~~g~v~~~~~----~-~~-~~~~~~v~icGp~-~mv~~~~~~l~~~g 201 (243)
T cd06192 154 TTDDGELGLEGKVTDSDK----P-IP-LEDVDRIIVAGSD-IMMKAVVEALDEWL 201 (243)
T ss_pred EecCCCCccceeechhhh----h-hh-cccCCEEEEECCH-HHHHHHHHHHHhhc
Confidence 333322 3456555311 0 00 1235689999998 99999998887753
No 77
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.85 E-value=7.2e-21 Score=176.16 Aligned_cols=133 Identities=20% Similarity=0.211 Sum_probs=110.1
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcE-EeeCCCC--CccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVV-VRPVDDY--DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~-~~~l~~~--~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~ 83 (628)
|+++|+|+|+||||+++|+.|++.+...|+.++ +.++.++ ...++.+++.+||++||||.|.+|+++..|++++..
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~- 79 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY- 79 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc-
Confidence 579999999999999999999999999898877 5666643 234667899999999999999999999999998733
Q ss_pred cCcccccCCcEEEEEecCCcCh--hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCC-CchhhHHHHHHHH
Q 006868 84 SLSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPS-GYEGALDPWMRSL 152 (628)
Q Consensus 84 ~~~~~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~-g~~~~~~~W~~~l 152 (628)
++++++|||+||+.| ++||.+++.++++|+++ .|.++++....+ .+...+.+|.+++
T Consensus 80 -------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~-----~~~~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 80 -------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSS-----HPVLKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred -------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCc-----CCceeEecCCcccccHHHHHHHHHHh
Confidence 578999999999999 58999999999999776 345566654332 2567788998875
No 78
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.85 E-value=1.4e-20 Score=176.37 Aligned_cols=145 Identities=28% Similarity=0.353 Sum_probs=125.5
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
|++++|+|+|.|||||.+|+.|++.|...|+++.+..........+..++.+++++||+|.|+.|+++.+|+..+...
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~~-- 78 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDLLESYDELLLGTPTWGAGELPDDWYDFIEELEPI-- 78 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhhhccCCEEEEEeCCCCCCcCCccHHHHHHHhccc--
Confidence 789999999999999999999999999999988666666555434458999999999999999999999999998662
Q ss_pred cccccCCcEEEEEecCCcChhH-HHHHHHHHHHHHHhcC--CeEeecceee--eCCCCCCchhhHHHHHHHHHHH
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLG--ATAVVERGLG--DDQHPSGYEGALDPWMRSLWRR 155 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~-f~~a~~~l~~~L~~lG--a~~v~~~~~~--d~~~~~g~~~~~~~W~~~l~~~ 155 (628)
.++++.|++||+||+.|.. ||.++..+.+.|+..| +..+.+.... +....+..++.++.|.++++..
T Consensus 79 ---~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 79 ---DFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred ---CcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHHHhh
Confidence 3889999999999999987 9999999999999999 5666666555 6666677999999999998753
No 79
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.84 E-value=1e-20 Score=188.60 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=118.6
Q ss_pred CCHHHHHHhcCCC-------------------cccceeeccCCCCC--CCeEEEEEEEEEeecCCCCcccccccHHhhCc
Q 006868 391 MPIDWLVQLVPPL-------------------KTRAFSISSSPLAH--PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL 449 (628)
Q Consensus 391 ~p~~~l~~~lp~~-------------------~~R~YSIaSsp~~~--~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l 449 (628)
.|||++...+|.. ..|+|||||+|..+ .+.++|+|+. .|.+|++|.++
T Consensus 27 ~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~ 95 (220)
T cd06197 27 TPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQV 95 (220)
T ss_pred CCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHh
Confidence 4788877766642 35999999999433 2789999842 38999999754
Q ss_pred CCCC---CceEEEEeecCCCCCCC----CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHH
Q 006868 450 DPQQ---GIYIPAWFQKGSLPRPP----PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 522 (628)
Q Consensus 450 ~~~~---G~~v~i~~~~g~F~lp~----~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~ 522 (628)
.... |+.|.+.+|.|.|.++. ...++||||+|||||||+++++++...... ..+++|+||+|+.+|++|.+
T Consensus 96 ~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~ 173 (220)
T cd06197 96 ARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNT--TWDITLLWSLREDDLPLVMD 173 (220)
T ss_pred hhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccC--CCcEEEEEEecchhhHHHHH
Confidence 3212 89999999999998872 357999999999999999999998764321 26899999999999999999
Q ss_pred HHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 523 LWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 523 el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
||.++.+. . + .+....+ ..||+|||+ .|.+.+.+.+.+
T Consensus 174 el~~~~~~-~-~------~~~~~~~---------------------------~~v~~CGP~-~m~~~~~~~~~~ 211 (220)
T cd06197 174 TLVRFPGL-P-V------STTLFIT---------------------------SEVYLCGPP-ALEKAVLEWLEG 211 (220)
T ss_pred HHHhccCC-c-e------EEEEEEe---------------------------ccEEEECcH-HHHHHHHHHhhh
Confidence 99876542 1 1 1211111 169999998 999988877664
No 80
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.84 E-value=4.4e-20 Score=176.03 Aligned_cols=116 Identities=29% Similarity=0.347 Sum_probs=103.9
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcc
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK 87 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~ 87 (628)
+|+|+|+|.||||+++|+.|++.+.+ ..++++++++.+..++.+++.+||++||||.|.+|+++..|++.|....
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~--~~~~i~~~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~--- 75 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE--DDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELD--- 75 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEcccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhcCC---
Confidence 58999999999999999999999864 4578999998887788999999999999999999999999999885433
Q ss_pred cccCCcEEEEEecCCc-Chh-HHHHHHHHHHHHHHhcCCeEeecc
Q 006868 88 QWLEGVRYAVFGLGDS-GYQ-KFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds-~y~-~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
++|+++++||+||+ .|+ +||.+++.+.+.|++.|++.+...
T Consensus 76 --l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 76 --FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFW 118 (167)
T ss_pred --CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEcee
Confidence 78999999999997 585 999999999999999999988643
No 81
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.83 E-value=1.6e-20 Score=183.49 Aligned_cols=183 Identities=20% Similarity=0.337 Sum_probs=146.8
Q ss_pred cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCCC
Q 006868 404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG 483 (628)
Q Consensus 404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GtG 483 (628)
.-|.||+||-| ..-+.|.+-|++..-+-.....+.|.||+|+-+|++ ||+|.|++|.|.|...+.++|+|+|++|.|
T Consensus 210 ~~rAYSmAsYP-eE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKp--GDKvtisGPfGEfFaKdtdaemvFigGGAG 286 (410)
T COG2871 210 IIRAYSMASYP-EEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG 286 (410)
T ss_pred HHHHhhhhcCh-hhcCeEEEEEEeccCCCCCCCCCccceeeeEEeecC--CCeEEEeccchhhhhccCCCceEEEecCcC
Confidence 46999999999 566788888877654433456678999999999999 999999999999887777899999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCC------ccchh
Q 006868 484 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ------KVYVQ 557 (628)
Q Consensus 484 IAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~------k~yVq 557 (628)
.||+||-+-....+..+ .+++.+.||+|+..+.+|++|+++++++.+++ +.++|+|....+ .+++.
T Consensus 287 mapmRSHIfDqL~rlhS--kRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF------~wH~aLSdplpEDnW~g~TgFih 358 (410)
T COG2871 287 MAPMRSHIFDQLKRLHS--KRKISFWYGARSLREMFYQEDFDQLQAENPNF------HWHLALSDPLPEDNWDGYTGFIH 358 (410)
T ss_pred cCchHHHHHHHHHhhcc--cceeeeeeccchHHHhHHHHHHHHHHhhCCCc------EEEEEecCCCCcCCcccchhHHH
Confidence 99999988776654432 38999999999999999999999999988888 899999986542 35555
Q ss_pred hhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q 006868 558 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSK 600 (628)
Q Consensus 558 d~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~il~~ 600 (628)
.++.+. .+.++= .+++.+|+|||+ .|-..|.+.|.+...+
T Consensus 359 nv~~en--~Lk~h~aPEDceyYmCGPp-~mNasvikmL~dlGVE 399 (410)
T COG2871 359 NVLYEN--YLKDHEAPEDCEYYMCGPP-LMNASVIKMLKDLGVE 399 (410)
T ss_pred HHHHhh--hhhcCCCchheeEEeeCcc-hhhHHHHHHHHhcCcc
Confidence 555443 111111 238999999999 8888888877776443
No 82
>PRK05802 hypothetical protein; Provisional
Probab=99.83 E-value=1.5e-20 Score=197.09 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=129.3
Q ss_pred CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC--C
Q 006868 391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--S 465 (628)
Q Consensus 391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g--~ 465 (628)
.||||+...+|. ...|+|||+|+| ...+.++|+|++ .|..|++|.++++ |++|.+.+|.| .
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~-~~~g~l~l~ik~-----------~G~~T~~L~~l~~--Gd~l~v~GP~GnG~ 161 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEAD-TEENIIKVAIEI-----------RGVKTKKIAKLNK--GDEILLRGPYWNGI 161 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccC-CCCCEEEEEEEe-----------cChhHHHHhcCCC--CCEEEEeCCCCcCc
Confidence 589998877753 346999999998 456889999943 4899999999999 99999999985 4
Q ss_pred CCCC----CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCc
Q 006868 466 LPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGG 541 (628)
Q Consensus 466 F~lp----~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~ 541 (628)
|.++ ....++|+||+|+||||+++++++...++ .+++|+||+|+++|++|.++|+++..+ .
T Consensus 162 F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-----~~v~li~g~r~~~~~~~~~el~~~~~~----------~ 226 (320)
T PRK05802 162 LGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-----NKIIVIIDKGPFKNNFIKEYLELYNIE----------I 226 (320)
T ss_pred CCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-----CcEEEEEeCCCHHHHHHHHHHHHhhCc----------e
Confidence 7553 23468999999999999999999987654 579999999999999999999998655 1
Q ss_pred EEEEEecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 542 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 542 ~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
....+..++. .+++|++++.+. +...||+|||. .|.+.|.+.+.+.
T Consensus 227 ~~~~~~ddG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP~-~M~k~v~~~l~~~ 276 (320)
T PRK05802 227 IELNLLDDGELSEEGKDILKEIIKKE---------DINLIHCGGSD-ILHYKIIEYLDKL 276 (320)
T ss_pred EEEEecccCCCCccccchHHHHhcCC---------CCCEEEEECCH-HHHHHHHHHHhhh
Confidence 1121111221 234555554422 23689999998 9999998888764
No 83
>PLN02252 nitrate reductase [NADPH]
Probab=99.82 E-value=2.7e-20 Score=216.64 Aligned_cols=191 Identities=18% Similarity=0.160 Sum_probs=141.2
Q ss_pred CCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC
Q 006868 391 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 391 ~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 467 (628)
.|+||+...++ . ...|+|||+|.+ ...+.++|+|+++......+....|.+|+||.+|++ |+.|.+.+|.|.|.
T Consensus 666 ~pGQhV~l~~~~~g~~~~R~YSpaS~~-~~~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~v--Gd~V~V~GP~G~f~ 742 (888)
T PLN02252 666 PVGKHVFLCATINGKLCMRAYTPTSSD-DEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPI--GDTIDVKGPLGHIE 742 (888)
T ss_pred CCCCEEEEEEecCCeEEEeeeEecccC-CCCCEEEEEEEEEeccccCccCCCCchhhHHhcCCC--CCEEEEecCcccee
Confidence 47888766653 2 247999999998 456799999987621111112246999999999999 99999999999763
Q ss_pred --------CC-C--CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcc
Q 006868 468 --------RP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFS 535 (628)
Q Consensus 468 --------lp-~--~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~ 535 (628)
++ . ..++++|||+|||||||++++++....... ..+++||||+|+.+|++|++||+++.+.+ +++
T Consensus 743 y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d--~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~- 819 (888)
T PLN02252 743 YAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED--KTEMSLVYANRTEDDILLREELDRWAAEHPDRL- 819 (888)
T ss_pred ecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC--CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCE-
Confidence 33 1 247999999999999999999998765321 26899999999999999999999999875 466
Q ss_pred cCCCCcEEEEEecCC-C----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHH-HHHHHHH
Q 006868 536 EAKGGGFYVAFSRKQ-P----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE 596 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~~-~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~-v~~~L~~ 596 (628)
+++.++|+.. + .+++|++.+.+.. + .....+..+|+|||+ .|.+. ++..|.+
T Consensus 820 -----~v~~vls~~~~~~w~g~~GrV~~~ll~~~--l-~~~~~~~~vyiCGPp-~Mi~~av~~~L~~ 877 (888)
T PLN02252 820 -----KVWYVVSQVKREGWKYSVGRVTEAMLREH--L-PEGGDETLALMCGPP-PMIEFACQPNLEK 877 (888)
T ss_pred -----EEEEEecCCCcCCCCCcCCcCCHHHHHHh--c-ccCCCCeEEEEeCCH-HHHHHHHHHHHHH
Confidence 7888888743 1 3577776443221 0 001236789999998 88874 6656644
No 84
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.81 E-value=2.9e-19 Score=180.69 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=132.6
Q ss_pred CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC-CCCCCEEEEeCC
Q 006868 403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPG 481 (628)
Q Consensus 403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp-~~~~piimIa~G 481 (628)
.--|+||-.|++. +.+.++|.|++ ...|.+|.||++|+. ||+|.+++|.|.|.++ ...+.+.|||+|
T Consensus 98 ~vvRpYTPvs~~~-~~g~~~l~VK~---------Y~~G~mS~~l~~Lki--Gd~ve~rGP~G~~~~~~~~~~~l~miAgG 165 (286)
T KOG0534|consen 98 LVVRPYTPVSLDD-DKGYFDLVVKV---------YPKGKMSQHLDSLKI--GDTVEFRGPIGEFKYDPQKAKHLGMIAGG 165 (286)
T ss_pred EEEEecCCccCcc-ccceEEEEEEe---------ccCCcccHHHhcCCC--CCEEEEecCccceEecCCCcceEEEEecc
Confidence 3689999999983 35899999944 567999999999999 9999999999998887 667899999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcEEEEEecCCC----Cccch
Q 006868 482 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP----QKVYV 556 (628)
Q Consensus 482 tGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~----~k~yV 556 (628)
||||||..++++....... ..+++|+|.+++.+|.++++||+.+.++++ .+ ++..+.++.+. .++||
T Consensus 166 tGItPmlqii~~il~~~~d--~tki~lly~N~te~DILlr~eL~~la~~~p~rf------~~~y~v~~~~~~w~~~~g~I 237 (286)
T KOG0534|consen 166 TGITPMLQLIRAILKDPED--TTKISLLYANKTEDDILLREELEELASKYPERF------KVWYVVDQPPEIWDGSVGFI 237 (286)
T ss_pred cchhhHHHHHHHHhcCCCC--CcEEEEEEecCCccccchHHHHHHHHhhCcceE------EEEEEEcCCcccccCccCcc
Confidence 9999999999999886543 478999999999999999999999999877 66 78888887663 46777
Q ss_pred hh-hHHHcHHHHHHHHhC----CCEEEEeCCCCCCHHH
Q 006868 557 QH-KMLEQSQRIWNLLLS----KASIYVAGSATKMPSD 589 (628)
Q Consensus 557 qd-~l~~~~~~v~~~l~~----~~~iyvCG~~~~M~~~ 589 (628)
.. .|.++ +.. ...++||||+ +|.+.
T Consensus 238 t~~~i~~~-------l~~~~~~~~~~liCGPp-~m~~~ 267 (286)
T KOG0534|consen 238 TKDLIKEH-------LPPPKEGETLVLICGPP-PMING 267 (286)
T ss_pred CHHHHHhh-------CCCCCCCCeEEEEECCH-HHHhH
Confidence 64 33333 322 3789999999 99874
No 85
>PRK09267 flavodoxin FldA; Validated
Probab=99.80 E-value=9.2e-19 Score=167.38 Aligned_cols=144 Identities=24% Similarity=0.313 Sum_probs=116.8
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
||+++|+|+|.||||+++|+.|++.+.. ..+.++++++.+..++.+++.+||++|||+.|.+|+.+..|++.+....
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~--~~~~~~~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~- 77 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK--DVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEID- 77 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCC-
Confidence 5789999999999999999999999963 3578999998877788899999999999988999999999998874432
Q ss_pred cccccCCcEEEEEecCCc-Ch-hHHHHHHHHHHHHHHhcCCeEeecc---ee-----------------eeCCCC-CCch
Q 006868 86 SKQWLEGVRYAVFGLGDS-GY-QKFNFVAKKLDNRLLDLGATAVVER---GL-----------------GDDQHP-SGYE 142 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds-~y-~~f~~a~~~l~~~L~~lGa~~v~~~---~~-----------------~d~~~~-~g~~ 142 (628)
++|+++++||+||+ .| .+||.+.+.+.+.|++.|++.+... +. .|...+ +-.+
T Consensus 78 ----l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~~~~~~~td 153 (169)
T PRK09267 78 ----FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDEDNQSELTD 153 (169)
T ss_pred ----CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecCCCchhhhH
Confidence 78999999999987 58 5899999999999999998876441 11 111111 1135
Q ss_pred hhHHHHHHHHHHHH
Q 006868 143 GALDPWMRSLWRRL 156 (628)
Q Consensus 143 ~~~~~W~~~l~~~l 156 (628)
+.+++|+++|.+.+
T Consensus 154 ~~i~~w~~~i~~~~ 167 (169)
T PRK09267 154 ERIEAWVKQIKPEF 167 (169)
T ss_pred HHHHHHHHHHHHHh
Confidence 78889999887654
No 86
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.79 E-value=2.4e-19 Score=216.98 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=140.8
Q ss_pred CCCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecC--
Q 006868 390 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-- 464 (628)
Q Consensus 390 ~~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g-- 464 (628)
..||||+...++ + ...|+|||+|.| ...+.++|+|+ ...|.+|.||+++++ |++|.+.+|.|
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p-~~~~~i~l~Vr----------~~~G~~S~~L~~l~~--Gd~v~v~gp~G~~ 1014 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLP-DDLGVISILAR----------GDKGTLKEWISALRP--GDSVEMKACGGLR 1014 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCC-CCCCeEEEEEE----------cCCChhHHHHhhCCC--CCEEEEeCCcCcc
Confidence 468999877764 2 246999999998 45678999883 246999999999999 99999998655
Q ss_pred --------CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-Cc
Q 006868 465 --------SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF 534 (628)
Q Consensus 465 --------~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l 534 (628)
.|.++ ...+|+||||+|||||||++++++...........+++||||+|+.+|++|++||++|.++++ ++
T Consensus 1015 ~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f 1094 (1167)
T PTZ00306 1015 IERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKF 1094 (1167)
T ss_pred ccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCE
Confidence 35555 556899999999999999999998876431001268999999999999999999999988755 47
Q ss_pred ccCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHh---CCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 535 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 535 ~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~---~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
++++++|++++ ..++|++.+.+. .+. .+..+|+|||+ .|.+.+.+.|.+.
T Consensus 1095 ------~~~~~ls~~~~~w~~~~G~i~~~~l~~------~l~~~~~~~~vyiCGP~-~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1095 ------KCHFVLNNPPEGWTDGVGFVDRALLQS------ALQPPSKDLLVAICGPP-VMQRAVKADLLAL 1151 (1167)
T ss_pred ------EEEEEECCCCcccCCCCCCCCHHHHHH------hcCCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence 78888887543 346776543222 222 36789999998 9999988877653
No 87
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.1e-19 Score=180.14 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=137.4
Q ss_pred CCCCHHHHHHhcCCC----cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeec
Q 006868 389 VQMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK 463 (628)
Q Consensus 389 ~~~p~~~l~~~lp~~----~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~ 463 (628)
..-+||+-...++.. .|.+||||++. ...++++.| +.-|..|.-|. +|++ |+++.+.+|+
T Consensus 242 ~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~--~~sel~FsI-----------K~LGD~Tk~l~dnLk~--G~k~~vdGPY 306 (438)
T COG4097 242 LYQAGQFAFLKIEIEEFRMRPHPFTIACSH--EGSELRFSI-----------KALGDFTKTLKDNLKV--GTKLEVDGPY 306 (438)
T ss_pred cccCCceEEEEeccccccCCCCCeeeeeCC--CCceEEEEe-----------hhhhhhhHHHHHhccC--CceEEEecCc
Confidence 356888877777754 49999999996 445788888 45699999897 5999 9999999999
Q ss_pred CCCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006868 464 GSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 543 (628)
Q Consensus 464 g~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 543 (628)
|.|...+.....|.||+|+|||||+|+++........ .+++|||.||+.++.+|.+||+++.++.+++ .++
T Consensus 307 G~F~~~~g~~~QVWIAGGIGITPFis~l~~l~~~~s~---~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~------~lH 377 (438)
T COG4097 307 GKFDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD---PPVHLFYCSRNWEEALYAEELRALAQKLPNV------VLH 377 (438)
T ss_pred ceeecccCCcccEEEecCcCcchHHHHHHhhcccccC---CceEEEEEecCCchhHHHHHHHHHHhcCCCe------EEE
Confidence 9998884444499999999999999999999885543 8999999999999999999999999965766 677
Q ss_pred EEEecCCCCccchhh-hHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 544 VAFSRKQPQKVYVQH-KMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 544 ~a~Sr~~~~k~yVqd-~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
+.-|. .++|+.. .+++..+. ..--.||+|||. +|.+.+++.|++.
T Consensus 378 iiDSs---~~g~l~~e~ler~~~~-----~~~~sv~fCGP~-~m~dsL~r~l~~~ 423 (438)
T COG4097 378 IIDSS---KDGYLDQEDLERYPDR-----PRTRSVFFCGPI-KMMDSLRRDLKKQ 423 (438)
T ss_pred EecCC---CCCccCHHHhhccccc-----cCcceEEEEcCH-HHHHHHHHHHHHc
Confidence 74443 3556543 22222121 113489999998 9999888887764
No 88
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.78 E-value=4.2e-19 Score=207.35 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=135.0
Q ss_pred CCCHHHHHHhcCCC-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceE-EEEeecCCCC
Q 006868 390 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLP 467 (628)
Q Consensus 390 ~~p~~~l~~~lp~~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~i~~~~g~F~ 467 (628)
..||||+...++.. .+|+|||+|.+ ...+.++|+|.+ .|..|.+|+++++ |+.| .+.+|.|+|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~-~~~g~i~~~vk~-----------vG~~T~~L~~l~~--Gd~v~~v~GP~G~~~ 93 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADAD-PEKGTITLVIQE-----------VGLSTTKLCELNE--GDYITDVVGPLGNPS 93 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeC-CCCCEEEEEEEE-----------cCchHHHHhcCCC--CCEeCeEeCCCCCCc
Confidence 35999998887653 46899999997 456889999954 3899999999999 9999 7999999887
Q ss_pred CCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006868 468 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 468 lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
......+++|||+|+|||||++++++....+ .++++|||+|+.+|++|.+||++|... +.++ +
T Consensus 94 ~~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~~l~~~~el~~~~~~-----------~~~~-t 156 (752)
T PRK12778 94 EIENYGTVVCAGGGVGVAPMLPIVKALKAAG-----NRVITILGGRSKELIILEDEMRESSDE-----------VIIM-T 156 (752)
T ss_pred cCCCCCeEEEEECCEeHHHHHHHHHHHHHCC-----CeEEEEeccCCHHHhhhHHHHHhhcCe-----------EEEE-E
Confidence 6633479999999999999999999887754 589999999999999999999987654 2222 2
Q ss_pred cCCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 548 RKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
.++. .+++|++.+.+.... ..+...||+|||+ .|.+.+.+.+.+
T Consensus 157 ~dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~ 202 (752)
T PRK12778 157 DDGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGPA-IMMKFVCLLTKK 202 (752)
T ss_pred CCCCCCCcccHHHHHHHHhhc----CCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 3322 468888876554221 1124579999998 999999887754
No 89
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.78 E-value=2.6e-18 Score=176.37 Aligned_cols=144 Identities=29% Similarity=0.433 Sum_probs=125.3
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc---
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK--- 83 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~--- 83 (628)
.+-.|+|+|+||+|+++|+.+++.+......+.+++++ +++.+++ ..+++|++.|+.+|++| +.-|++||...
T Consensus 47 ~~~~vfy~s~~GtA~~~A~~~~e~~~sld~~~~llnl~-y~~~d~p-en~~~~lv~~~~~~~~~--~d~~~~~L~Esa~D 122 (601)
T KOG1160|consen 47 IKSKVFYSSLTGTAKKAAKSVHEKLKSLDELPKLLNLD-YSDFDVP-ENALYFLVLPSYDIDPP--LDYFLQWLEESAND 122 (601)
T ss_pred ccceEEEEeccchHHHHHHHHHHHHHhcccchhhcCCC-CCccCCC-cceEEEEEecccCCCCc--HHHHHHHHHhhhhc
Confidence 34489999999999999999999999888889999999 7777888 66777777777689988 88899999764
Q ss_pred -cCcccccCCcEEEEEecCCcCh-hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868 84 -SLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (628)
Q Consensus 84 -~~~~~~l~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (628)
.++..+|+|.+|||||+||+.| +.||..++..|+++..|||.|++|+|++|.++. .+++|...+++.|+.-
T Consensus 123 FRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~~-----~id~W~~~~~~~Lk~g 195 (601)
T KOG1160|consen 123 FRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDSA-----KIDEWTSLVAETLKDG 195 (601)
T ss_pred cccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCccccccc-----cHHHHHHHHHHHHcCC
Confidence 4456679999999999999977 689999999999999999999999999998743 6779999999999653
No 90
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.75 E-value=1.8e-18 Score=174.28 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=121.0
Q ss_pred CCHHHHHHhcCC----------------------CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccc-ccccHHhh
Q 006868 391 MPIDWLVQLVPP----------------------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA 447 (628)
Q Consensus 391 ~p~~~l~~~lp~----------------------~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~ 447 (628)
.|+|++...+|. ...|.|||+|.+ ...++++|.|.+ ... |.+|+||+
T Consensus 28 ~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~-~~~~~l~~~v~~---------~~~~G~~s~~l~ 97 (235)
T cd06193 28 GPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFD-PEAGELDIDFVL---------HGDEGPASRWAA 97 (235)
T ss_pred CCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEc-CCCCEEEEEEEe---------CCCCCchHHHHh
Confidence 588888777653 346999999987 356889999853 234 89999999
Q ss_pred CcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHh
Q 006868 448 GLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 527 (628)
Q Consensus 448 ~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~ 527 (628)
++++ ||+|.+.+|.|.|.++....++||||+||||||+++++++.... .+++++||+|+++|.++.+++
T Consensus 98 ~l~~--Gd~v~v~gP~G~~~~~~~~~~~vlia~GtGi~p~~~il~~~~~~------~~~~~~~~~~~~~d~~~l~~~--- 166 (235)
T cd06193 98 SAQP--GDTLGIAGPGGSFLPPPDADWYLLAGDETALPAIAAILEELPAD------ARGTALIEVPDAADEQPLPAP--- 166 (235)
T ss_pred hCCC--CCEEEEECCCCCCCCCCCcceEEEEeccchHHHHHHHHHhCCCC------CeEEEEEEECCHHHccccCCC---
Confidence 9999 99999999999998774457999999999999999999977542 579999999998765543321
Q ss_pred HhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 528 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 528 ~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
..+ +++.+.+++.. .......+... .....++..+|+||++ .|++.+++.|.+
T Consensus 167 ----~~~------~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~vyicGp~-~mv~~v~~~l~~ 219 (235)
T cd06193 167 ----AGV------EVTWLHRGGAE-AGELALLAVRA----LAPPAGDGYVWIAGEA-GAVRALRRHLRE 219 (235)
T ss_pred ----CCc------EEEEEeCCCCC-cchhHHHHHhc----ccCCCCCeEEEEEccH-HHHHHHHHHHHH
Confidence 234 55555443332 21111110000 0001236799999998 999888877654
No 91
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.74 E-value=5.9e-18 Score=167.47 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=122.0
Q ss_pred CCCHHHHHHhcCCC----cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcC------CCCCceEEE
Q 006868 390 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIPA 459 (628)
Q Consensus 390 ~~p~~~l~~~lp~~----~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~i 459 (628)
..||||+...+|.. +.|+|||+|+|....+.++|+|+. ..|..|.++..+. . |++|.+
T Consensus 25 ~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~--~~~v~v 92 (210)
T cd06186 25 WKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGV--SLKVLV 92 (210)
T ss_pred cCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCc--eeEEEE
Confidence 46899998888865 689999999983225899999943 2388888887776 6 999999
Q ss_pred EeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEcCCCCCc-cccHHHHHHhHhcCCCccc
Q 006868 460 WFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS-GPAAPIIFFFGCRNEDD-FLYRELWLSHSLNDGVFSE 536 (628)
Q Consensus 460 ~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~-~~~~~~~L~~G~R~~~d-~ly~~el~~~~~~~g~l~~ 536 (628)
.+|.|.|..+ ....++||||+||||||++++++++...... ....++.|+|++|+.+| ..|.++|.+..+. ....
T Consensus 93 ~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~-~~~~- 170 (210)
T cd06186 93 EGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQEL-EVDG- 170 (210)
T ss_pred ECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHHHHhhhhc-cCCc-
Confidence 9999988745 5567999999999999999999998875410 01278999999999997 5799999761111 1100
Q ss_pred CCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 537 AKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 537 ~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++.+.+++ +|+|||. .|.+++++...+
T Consensus 171 ----~~~i~~T~----------------------------v~~CGp~-~~~~~~~~~~~~ 197 (210)
T cd06186 171 ----EIEIYVTR----------------------------VVVCGPP-GLVDDVRNAVAK 197 (210)
T ss_pred ----eEEEEEee----------------------------EEEECch-hhccHHHHHHhh
Confidence 23333333 8999997 999999887766
No 92
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=179.62 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=125.7
Q ss_pred cCCCcEEEEEECCcchHHHHHHHHHHHHH--hCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHH
Q 006868 4 EKRNKLLILYASQTGNALDAAERIGRESE--RRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFW 77 (628)
Q Consensus 4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~--~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~ 77 (628)
..+++|+|+|+|+||||+++|+.|++.+. ..|++++++++.+.+.+++ .+++.+||++|||+.|.+ +.+..|+
T Consensus 245 ~~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT~~~~~~-~~~~~~l 323 (394)
T PRK11921 245 YQENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSSTINRGIL-SSTAAIL 323 (394)
T ss_pred CCcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCCcCcccc-HHHHHHH
Confidence 35788999999999999999999999998 6789999999998886665 469999999999977766 5699999
Q ss_pred HHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868 78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
+++...+ ++|+.+++|| +|+|+|.+.+.+.++|+.+|++.+.+...+.....+...+.+++|.++|.+.+
T Consensus 324 ~~l~~~~-----~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 324 EEIKGLG-----FKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred HHhhccC-----cCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHhh
Confidence 9987654 7899999999 59999999999999999999999998888888876667788899999987655
No 93
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.73 E-value=2.3e-17 Score=194.73 Aligned_cols=181 Identities=12% Similarity=0.027 Sum_probs=131.8
Q ss_pred CCCHHHHHHhcC-CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEE-EEeecCCCC
Q 006868 390 QMPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP-AWFQKGSLP 467 (628)
Q Consensus 390 ~~p~~~l~~~lp-~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~-i~~~~g~F~ 467 (628)
..||||+...++ +...|+|||+|.+ ...+.++|+|+. .|..|.+|.++++ |+.|. +.+|.|+|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~-~~~g~i~l~Vk~-----------vG~~T~~L~~lk~--Gd~l~~I~GPlG~~f 742 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWD-AEKGTIDLVVQG-----------MGTSSLEINRMAI--GDAFSGIAGPLGRAS 742 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCC-CCCCEEEEEEEe-----------eccHHHHHhcCCC--cCEEeeeecCCCCCc
Confidence 359999887764 3345999999987 456889999843 3888999999999 99995 999999864
Q ss_pred -CCC--CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHH---HHhHhcCCCcccCCCCc
Q 006868 468 -RPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW---LSHSLNDGVFSEAKGGG 541 (628)
Q Consensus 468 -lp~--~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el---~~~~~~~g~l~~~~~~~ 541 (628)
++. ...++||||+|+||||+++++++....+ .+++|+||+|+++|++|.+++ ++|.+.++..- .
T Consensus 743 ~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-----~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~-----~ 812 (944)
T PRK12779 743 ELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-----NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQL-----D 812 (944)
T ss_pred CCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-----CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCe-----E
Confidence 432 3469999999999999999999887654 589999999999898887664 55655545321 4
Q ss_pred EEEEEecCCC--CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 542 FYVAFSRKQP--QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 542 ~~~a~Sr~~~--~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++++ +.++. .+++|++.+.+........-. ....||+|||+ .|++.|.+.|.+
T Consensus 813 v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~-~Mmkav~~~l~~ 868 (944)
T PRK12779 813 VIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPP-LMMRAVSDLTKP 868 (944)
T ss_pred EEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCH-HHHHHHHHHHHH
Confidence 4433 33322 468888876554221100000 13679999998 999999887754
No 94
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.71 E-value=5.3e-17 Score=145.25 Aligned_cols=92 Identities=23% Similarity=0.351 Sum_probs=76.7
Q ss_pred EEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccccc
Q 006868 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL 90 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l 90 (628)
|+|+|+||||++++ ++.|+++....+++.+..++ +++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv-------~~lg~~~~~i~~~~~d~~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n-------- 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFV-------EKLGFQHIRIPVDETDDIHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN-------- 63 (125)
T ss_pred CEEEcccccHHHHH-------HHcCCCcEEeecCCcchhhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh--------
Confidence 78999999999994 34566666677776555455 6777766 9999999999999999987632
Q ss_pred CCcEEEEEecCCcCh-hHHHHHHHHHHHHHHh
Q 006868 91 EGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLD 121 (628)
Q Consensus 91 ~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~ 121 (628)
+.++|||+||++| +.||.|++.+.+++..
T Consensus 64 --~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 --LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred --cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 7899999999999 7999999999999977
No 95
>PRK05569 flavodoxin; Provisional
Probab=99.71 E-value=7.2e-17 Score=149.53 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=113.3
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCC-ChhHHHHHHHHHhcc
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDT-PDSMKVFWRFLLQKS 84 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~-p~~~~~F~~~L~~~~ 84 (628)
|++++|+|+|.||||+++|+.|++.+.+.|..+++.++++.+..++.+++.|||++|||+.|.+ |+.+..|++.+....
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~ 80 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTP 80 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccC
Confidence 5689999999999999999999999999999999999999888888999999999999976665 479999999885433
Q ss_pred CcccccCCcEEEEEecCCcChhHH-HHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006868 85 LSKQWLEGVRYAVFGLGDSGYQKF-NFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f-~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~ 153 (628)
++|+++++||.+ +|. +.+.+.+.+.|+..|++.+.+ ..+...+++...+.+.+|.++|+
T Consensus 81 -----~~~K~v~~f~t~----g~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 81 -----NENKKCILFGSY----GWDNGEFMKLWKDRMKDYGFNVIGD-LAVNESPNKEELNSAKELGKKLA 140 (141)
T ss_pred -----cCCCEEEEEeCC----CCCCCcHHHHHHHHHHHCCCeEeee-EEEccCCCHHHHHHHHHHHHHHh
Confidence 679999999964 432 556788999999999998765 66665554445666677776654
No 96
>PRK05568 flavodoxin; Provisional
Probab=99.70 E-value=1.1e-16 Score=148.42 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=114.1
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCC-hhHHHHHHHHHhcc
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP-DSMKVFWRFLLQKS 84 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p-~~~~~F~~~L~~~~ 84 (628)
|++++|+|.|+||||+++|+.|++.+.+.|+.++++++.+.+..++.+++.|||++|||+.|.+| +.+..|++.+...
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~- 79 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSL- 79 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhh-
Confidence 56899999999999999999999999999999999999998888889999999999999777654 7899999987432
Q ss_pred CcccccCCcEEEEEecCCcChhHH-HHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868 85 LSKQWLEGVRYAVFGLGDSGYQKF-NFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 154 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f-~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~ 154 (628)
++++++++||+ |+|- ..+.+.+.+.|+++|++.+.+...+...+++...+.+.+|.++|.+
T Consensus 80 -----~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 80 -----VKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNEGLIVNNTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred -----hCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCCcEEEecCCCHHHHHHHHHHHHHHHh
Confidence 67999999996 3331 3457889999999999998876666665544466667777776643
No 97
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.70 E-value=4.9e-17 Score=193.55 Aligned_cols=170 Identities=13% Similarity=0.129 Sum_probs=130.7
Q ss_pred CCCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHh-hCcCCCCCceE-EEEeecCCC
Q 006868 390 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYI-PAWFQKGSL 466 (628)
Q Consensus 390 ~~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v-~i~~~~g~F 466 (628)
..||||++..++. ...|+|||++.+ ...+.++|.|.+ .|..|.|| .++++ ||.| .+.+|.|.|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~-~~~g~i~l~vk~-----------vG~~T~~L~~~lk~--Gd~l~~v~GPlG~~ 93 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFD-RKKGTITMVVQA-----------LGKTTREMMTKFKA--GDTFEDFVGPLGLP 93 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcC-CCCCEEEEEEEe-----------cCcHHHHHHhcCCC--CCEEeeeecCCCCC
Confidence 3699999888753 346999999987 356788888843 48999998 68999 9999 799999976
Q ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006868 467 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 467 ~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
.......++||||+|+||||+++++++....+ .+++++||+|++++++|.+||+++... ++++
T Consensus 94 ~~~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-----~~v~li~g~R~~~~l~~~del~~~~~~-----------~~v~- 156 (1006)
T PRK12775 94 QHIDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-----ARTTGIIGFRNKDLVFWEDKFGKYCDD-----------LIVC- 156 (1006)
T ss_pred CCCCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-----CcEEEEEeCCChHHcccHHHHHhhcCc-----------EEEE-
Confidence 54433468999999999999999999877654 579999999999999999999876543 2222
Q ss_pred ecCCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 547 SRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 547 Sr~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+.++. .+++|++.+.+.... .....||+|||. .|++.|.+.+++
T Consensus 157 tddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP~-~Mm~av~~~~~~ 202 (1006)
T PRK12775 157 TDDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGPL-PMMNACVETTRP 202 (1006)
T ss_pred ECCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECCH-HHHHHHHHHHHH
Confidence 22322 468888877654211 124589999998 999999887754
No 98
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.69 E-value=3.3e-17 Score=144.55 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=81.3
Q ss_pred EEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCC-cccCCCCcEEEEEecCCC----
Q 006868 477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV-FSEAKGGGFYVAFSRKQP---- 551 (628)
Q Consensus 477 mIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~-l~~~~~~~~~~a~Sr~~~---- 551 (628)
|||+|||||||+++++++...... .+++||||+|+++|++|+++|+++.+.++. + .++.+ ++.+.
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~~-~~~~~~~~~ 70 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDN---RKVTLFYGARTPEDLLFRDELEALAQEYPNRF------HVVYV-SSPDDGWDG 70 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCT---SEEEEEEEESSGGGSTTHHHHHHHHHHSTTCE------EEEEE-TTTTSSTTS
T ss_pred CeecceeHHHHHHHHHHHHHhCCC---CCEEEEEEEcccccccchhHHHHHHhhccccc------ccccc-cccccccCC
Confidence 899999999999999999987443 899999999999999999999999987443 3 33333 44332
Q ss_pred CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHH
Q 006868 552 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWS 592 (628)
Q Consensus 552 ~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~ 592 (628)
.++||++.+.+.... ...-..++.||||||+ .|.++|++
T Consensus 71 ~~g~v~~~~~~~~~~-~~~~~~~~~v~iCGp~-~m~~~v~~ 109 (109)
T PF00175_consen 71 FKGRVTDLLLEDLLP-EKIDPDDTHVYICGPP-PMMKAVRK 109 (109)
T ss_dssp EESSHHHHHHHHHHH-HHHCTTTEEEEEEEEH-HHHHHHHH
T ss_pred ceeehhHHHHHhhcc-cccCCCCCEEEEECCH-HHHHHhcC
Confidence 378999988665433 2222448999999998 99988864
No 99
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.69 E-value=1.2e-16 Score=176.34 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=124.4
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhC--CCCcEEeeCCCCCccCCC----CCCeEEEEEecCCCCCCChhHHHHHH
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERR--GCPVVVRPVDDYDARCLP----EEDTVIFVVSTTGQGDTPDSMKVFWR 78 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~~l~----~~~~vi~~~sT~g~G~~p~~~~~F~~ 78 (628)
.+++++|+|+|+|||||++|+.|++.+++. |+++++.++++.+.+++. +++.|||+||||++|.+| .+..|++
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~ 328 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLE 328 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCccCCcchH-HHHHHHH
Confidence 568899999999999999999999999976 678899999998876654 589999999999665555 7999999
Q ss_pred HHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868 79 FLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 79 ~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
.+...+ ++|+.+++|| +|+|+|.+++.+.++|+.+|++.+ +...++..+++...+.+.++.++|.+++.
T Consensus 329 ~l~~~~-----l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 329 EITGLR-----FRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred HhhccC-----cCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 986654 7899999999 689999999999999999999986 56888888776678888999999998886
No 100
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.58 E-value=1.2e-14 Score=132.42 Aligned_cols=125 Identities=15% Similarity=0.257 Sum_probs=94.3
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCC----CCCChhHHHHHHHHHh
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQ----GDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~----G~~p~~~~~F~~~L~~ 82 (628)
+.+.|+|.|.||||+++|++|... ...+++++. ..+...+.+++++||||. |+.|+.+.+|++...+
T Consensus 1 ~~~~I~Y~S~TGNt~~f~~kl~~~-------~~~i~i~~~--~~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n 71 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRFVQKLGLP-------ATRIPINER--ERLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEHN 71 (134)
T ss_pred CcEEEEEECCChhHHHHHHHhCCc-------ceEEecCCC--ccccCCCCEEEEEeccCCCCcCCcccHHHHHHHhcccc
Confidence 357899999999999999988654 235666542 245567789999999999 6999999999887422
Q ss_pred ccCcccccCCcEEEEEecCCcCh-hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006868 83 KSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 154 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~ 154 (628)
....++|||+||++| ..||.|++.+.+++. +--...++-+.++.+.+.+.+|++++|.
T Consensus 72 --------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~------vp~l~k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 72 --------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ------VPLLYRFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred --------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC------CCeEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 246899999999999 589999999999876 2222344444333356677888888865
No 101
>PRK06242 flavodoxin; Provisional
Probab=99.52 E-value=7.8e-14 Score=130.54 Aligned_cols=133 Identities=22% Similarity=0.197 Sum_probs=102.0
Q ss_pred CcEEEEEECC-cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 7 NKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 7 ~~v~I~Y~S~-tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
|+++|+|.|. ||||+++|+.|++.+. ++++++.+....++.++|.|||++||| .|.+|+.++.|++.+..
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-----~~~~~i~~~~~~~~~~~d~ii~g~pvy-~~~~~~~~~~fl~~~~~--- 71 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-----AEVIDPGDVNPEDLSEYDLIGFGSGIY-FGKFHKSLLKLIEKLPP--- 71 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-----cEEecHHHCCcccHhHCCEEEEeCchh-cCCcCHHHHHHHHhhhh---
Confidence 5689999999 7999999999999883 567788777667888999999999999 79999999999987632
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee---------------eeCCCCCCchhhHHHHHH
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL---------------GDDQHPSGYEGALDPWMR 150 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~---------------~d~~~~~g~~~~~~~W~~ 150 (628)
+.++++++||.+....+. +.+.+.+.|+.+|++.+..... ++..+++...+.+.+|.+
T Consensus 72 ----~~~k~~~~f~t~g~~~~~---~~~~l~~~l~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk 144 (150)
T PRK06242 72 ----VSGKKAFIFSTSGLPFLK---YHKALKKKLKEKGFEIVGEFSCKGFDTFGPFKLIGGINKGHPNEKDLENAKEFAE 144 (150)
T ss_pred ----hcCCeEEEEECCCCCcch---HHHHHHHHHHHCCCEEEEEEecCCcccccchhhcCCccCCCcCHHHHHHHHHHHH
Confidence 468999999986554432 3789999999999998765321 122222224566677877
Q ss_pred HHHHH
Q 006868 151 SLWRR 155 (628)
Q Consensus 151 ~l~~~ 155 (628)
+|.+.
T Consensus 145 ~l~~~ 149 (150)
T PRK06242 145 NLKKK 149 (150)
T ss_pred HHhhc
Confidence 76543
No 102
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.50 E-value=1.9e-13 Score=126.61 Aligned_cols=135 Identities=14% Similarity=0.242 Sum_probs=90.0
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhC--CCCcEEeeCCCCCcc---CCCCCCeEEEEEecC-CCCCC---------C
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERR--GCPVVVRPVDDYDAR---CLPEEDTVIFVVSTT-GQGDT---------P 70 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~---~l~~~~~vi~~~sT~-g~G~~---------p 70 (628)
|+++.|+|+|.||||+++|++|...+.+. +..+..+++.++..+ .+.....+|+++||| |.|.+ |
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~p~vli~pTY~~gG~~~~~~~~~~vp 80 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETTDFFPETEPFVAFLPTYLEGGNGIDNGDVEILT 80 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccccccccCCCEEEEEeeecCCCCCcccCccccch
Confidence 46789999999999999999999876542 444445664444221 255667899999999 77754 4
Q ss_pred hhHHHHHHHHHhccCcccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHH
Q 006868 71 DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWM 149 (628)
Q Consensus 71 ~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~ 149 (628)
+.+.+|+.. .. ..+..++|||+||++|+ .||.+|+.+++.+ +...+.. .+.-. ...+.+.+.+++
T Consensus 81 ~~v~dFL~~---~~-----N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~vP~L~~-fEl~G--T~~Dv~~v~~~~ 146 (154)
T PRK02551 81 TPLGDFIAY---HD-----NAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GFPMLAD-FELRG--TPSDIERIAAII 146 (154)
T ss_pred HHHHHHHcc---hh-----hhhheEEEEeecccHHHHHHHHHHHHHHHHc---CCCEEEE-eeccC--CHHHHHHHHHHH
Confidence 445555421 11 35689999999999997 8999999999765 5555543 22211 111344455555
Q ss_pred HHHHH
Q 006868 150 RSLWR 154 (628)
Q Consensus 150 ~~l~~ 154 (628)
.+++.
T Consensus 147 ~~~~~ 151 (154)
T PRK02551 147 AELYA 151 (154)
T ss_pred HHHHH
Confidence 55443
No 103
>PLN02292 ferric-chelate reductase
Probab=99.50 E-value=1.2e-13 Score=156.76 Aligned_cols=174 Identities=18% Similarity=0.200 Sum_probs=123.6
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCc-----eEEEE
Q 006868 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGI-----YIPAW 460 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~-----~v~i~ 460 (628)
..|||++...+|. .+.|+|||+|+|..+++.++++|+ ..|..|++|. .++. |+ +|.+.
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK-----------~~G~~T~~L~~~l~~--gd~i~~~~V~Ve 418 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIK-----------SQGKWSTKLYHMLSS--SDQIDRLAVSVE 418 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEE-----------cCCchhHHHHHhCCC--CCccccceEEEE
Confidence 3589988777775 478999999998445688999984 3477788886 4677 77 45799
Q ss_pred eecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHh-------Hhc
Q 006868 461 FQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH-------SLN 530 (628)
Q Consensus 461 ~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~-------~~~ 530 (628)
||.|.+..+ ....+++|||+|+||||+++++++...+.... ...++.|+|++|+.+|.++.+++... .+.
T Consensus 419 GPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~ 498 (702)
T PLN02292 419 GPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF 498 (702)
T ss_pred CCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc
Confidence 999987655 44579999999999999999999987653211 12689999999999999887765532 233
Q ss_pred CCCcccCCCCcEEEEEecCCCCcc-chhhhHHHcHHHHHHHHh-----CCCEEEEeCCCCCCH
Q 006868 531 DGVFSEAKGGGFYVAFSRKQPQKV-YVQHKMLEQSQRIWNLLL-----SKASIYVAGSATKMP 587 (628)
Q Consensus 531 ~g~l~~~~~~~~~~a~Sr~~~~k~-yVqd~l~~~~~~v~~~l~-----~~~~iyvCG~~~~M~ 587 (628)
.++ ++.+.++|+.+.+. |-+. ..+.+...+. +...+.+|||++.+-
T Consensus 499 -~~~------~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w 550 (702)
T PLN02292 499 -IDI------QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNSWLW 550 (702)
T ss_pred -CCc------eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCchHH
Confidence 344 78888888765321 1111 2222222221 367899999985543
No 104
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.49 E-value=1.1e-13 Score=157.46 Aligned_cols=175 Identities=18% Similarity=0.181 Sum_probs=125.2
Q ss_pred CCHHHHHHhcCCC---cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-C----cCCCCC------ce
Q 006868 391 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-G----LDPQQG------IY 456 (628)
Q Consensus 391 ~p~~~l~~~lp~~---~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~----l~~~~G------~~ 456 (628)
.|||++...+|.. +.|+|||+|+|..+++.++++|++ .+|. |+.|. . +++ | .+
T Consensus 340 ~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~----------~gG~-T~~L~~~i~~~l~~--g~~~~~~~~ 406 (722)
T PLN02844 340 APTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC----------EGGW-TNSLYNKIQAELDS--ETNQMNCIP 406 (722)
T ss_pred CCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe----------CCCc-hHHHHHHHHhhccC--CCCcccceE
Confidence 5899988888754 689999999875567788888843 2333 44442 2 333 4 37
Q ss_pred EEEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHh-----H
Q 006868 457 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH-----S 528 (628)
Q Consensus 457 v~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~-----~ 528 (628)
+.+.+|.|.|..+ ....+++|||+|||||||++++++....+... ...++.|+|++|+.+|..|.+++... .
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~ 486 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSS 486 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHH
Confidence 8899999998766 44579999999999999999999998643210 12679999999999999999998632 2
Q ss_pred hcCCCcccCCCCcEEEEEecCCCCccchhhhHHHc--HHHHHHHHhCCCEEEEeCCCCCC
Q 006868 529 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATKM 586 (628)
Q Consensus 529 ~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~--~~~v~~~l~~~~~iyvCG~~~~M 586 (628)
+. .++ +++...+|+......+++.+... ...++ +=.+...+.+||+.+.+
T Consensus 487 ~~-~~l------kl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~~l 538 (722)
T PLN02844 487 NQ-LNL------KLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLESFL 538 (722)
T ss_pred Hh-cCc------eEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCchH
Confidence 22 344 78888999877655677766652 12222 11236789999997543
No 105
>PLN02631 ferric-chelate reductase
Probab=99.49 E-value=7.2e-14 Score=158.15 Aligned_cols=143 Identities=19% Similarity=0.235 Sum_probs=111.2
Q ss_pred CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCc--eEEEEeecC
Q 006868 391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI--YIPAWFQKG 464 (628)
Q Consensus 391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~--~v~i~~~~g 464 (628)
.|||++...+|. .+.|+|||+|+|..+++.++|+|+ +.|-.|++|.+ ++. .|+ +|.+.||.|
T Consensus 336 ~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK-----------~~Gg~T~~L~~~l~~-~g~~i~V~VeGPYG 403 (699)
T PLN02631 336 TPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIR-----------RQGSWTQKLYTHLSS-SIDSLEVSTEGPYG 403 (699)
T ss_pred CCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEE-----------cCChHHHHHHHhhhc-CCCeeEEEEECCCC
Confidence 689998888875 467999999998445688999983 35788998864 532 145 677789999
Q ss_pred CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHh------HhcCCCcc
Q 006868 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH------SLNDGVFS 535 (628)
Q Consensus 465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~------~~~~g~l~ 535 (628)
.|..+ ....++||||+|+||||+++++++...+.... ..++++|+||+|+.+|.+|.||++.+ .++ -++
T Consensus 404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~ni- 481 (699)
T PLN02631 404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-LNL- 481 (699)
T ss_pred CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-Cce-
Confidence 87766 55678999999999999999999998653221 23589999999999999999999863 233 356
Q ss_pred cCCCCcEEEEEecCCCC
Q 006868 536 EAKGGGFYVAFSRKQPQ 552 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~~~~ 552 (628)
++...+||+++.
T Consensus 482 -----~i~iyVTR~~~~ 493 (699)
T PLN02631 482 -----RIEAYITREDKK 493 (699)
T ss_pred -----EEEEEEcCCCCC
Confidence 888899997553
No 106
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.48 E-value=3e-13 Score=130.01 Aligned_cols=87 Identities=24% Similarity=0.272 Sum_probs=78.9
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
|+++|+|+|.||||+++|+.|++.|.. |+.+.++++++.+..++.+||.||||+||| .|.+++.+..|++....
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~-~G~~~~~~~~fl~~~~~---- 74 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIR-YGHFHSALYKFVKKHAT---- 74 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECccc-cCCcCHHHHHHHHHHHH----
Confidence 578999999999999999999999988 999999999988777888999999999999 89999999999876533
Q ss_pred ccccCCcEEEEEecC
Q 006868 87 KQWLEGVRYAVFGLG 101 (628)
Q Consensus 87 ~~~l~~~~~aVfGlG 101 (628)
.|+++++++|++|
T Consensus 75 --~l~~K~v~~F~v~ 87 (177)
T PRK11104 75 --QLNQMPSAFFSVN 87 (177)
T ss_pred --HhCCCeEEEEEec
Confidence 2889999999988
No 107
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.39 E-value=5.1e-12 Score=124.12 Aligned_cols=125 Identities=22% Similarity=0.188 Sum_probs=99.3
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHh-CCCCcEEeeCCCCC--------------------ccCCCCCCeEEEEEecC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDYD--------------------ARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~-~g~~v~~~~l~~~~--------------------~~~l~~~~~vi~~~sT~ 64 (628)
||+|+|+|+|.+|||+++|+.+++.+++ .|.+++++++.+.. .+++.++|.|||++|||
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty 80 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTR 80 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEeccc
Confidence 4689999999999999999999999998 89999999885421 34566899999999999
Q ss_pred CCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee
Q 006868 65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (628)
Q Consensus 65 g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~ 132 (628)
.|.+|+.++.|++++..... ...+.++.+++|+......+---.+.+.+...|..+|+..+.+...
T Consensus 81 -~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~ 146 (200)
T PRK03767 81 -FGNMAGQMRNFLDQTGGLWA-KGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYA 146 (200)
T ss_pred -CCCchHHHHHHHHHhccccc-cCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCc
Confidence 99999999999999854422 2348899999999754443334455677777778999987754333
No 108
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.34 E-value=8.3e-12 Score=122.25 Aligned_cols=121 Identities=23% Similarity=0.185 Sum_probs=98.4
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhC-CCCcEEeeCCCCC--------------------ccCCCCCCeEEEEEecCC
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERR-GCPVVVRPVDDYD--------------------ARCLPEEDTVIFVVSTTG 65 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~-g~~v~~~~l~~~~--------------------~~~l~~~~~vi~~~sT~g 65 (628)
.+|+|+|+|++|||+++|+.+++.+++. |.+++++++.+.. ..++.++|.|||++|||
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty- 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR- 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc-
Confidence 3699999999999999999999999875 9999999886532 24556899999999999
Q ss_pred CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
.|.+++.++.|++++..... ...+.|+.+++|+......+-...+...+...|..+|+..+..
T Consensus 80 ~g~~~~~lk~fld~~~~~~~-~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~ 142 (197)
T TIGR01755 80 FGNMASQMRNFLDQTGGLWA-SGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL 142 (197)
T ss_pred ccCccHHHHHHHHhcccccc-ccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence 89999999999999864421 2248899999999765555556666777888888999987754
No 109
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.33 E-value=4.9e-12 Score=132.54 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=116.4
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~ 81 (628)
..+|.|+|.|++|||+.+|+.|++.|.+.|+.|.++++++.+.+++ .+++.+++++||+ ++++++.+..++-.+.
T Consensus 246 ~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l~~v~ 324 (388)
T COG0426 246 KGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI-NGGAHPPIQTALGYVL 324 (388)
T ss_pred cceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc-cCCCCchHHHHHHHHH
Confidence 3479999999999999999999999999999999999998776554 5889999999999 7888889999998887
Q ss_pred hccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHH
Q 006868 82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (628)
Q Consensus 82 ~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l 152 (628)
..+ .+++..+||| +|+|-..|.+.+.++|+.+|.+...+..++...+.+...+.+++-.+++
T Consensus 325 ~~~-----~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~~P~~~~l~~c~e~g~~l 386 (388)
T COG0426 325 ALA-----PKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKFRPTEEDLKKCEEAGRDL 386 (388)
T ss_pred hcc-----CcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEeccceEEEecCCHHHHHHHHHHHHHh
Confidence 665 5678899999 7999999999999999999999888878888876544444444444443
No 110
>PRK07116 flavodoxin; Provisional
Probab=99.15 E-value=2e-10 Score=108.75 Aligned_cols=127 Identities=20% Similarity=0.283 Sum_probs=87.9
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-----------------------------CccCCCCCCe
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-----------------------------DARCLPEEDT 56 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-----------------------------~~~~l~~~~~ 56 (628)
||+++|+|.|.||||+++|+.|++.+....+. +.....+ ...++..++.
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~~~--i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~D~ 79 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADLFE--IKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEYDV 79 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCeEE--EeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhCCE
Confidence 78999999999999999999999998643222 2221100 0225568999
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeC
Q 006868 57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (628)
Q Consensus 57 vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~ 135 (628)
|||++|+| .|.+|+.++.|++.+ .+.++++++|++ |.+.+ +.+...+.+.+ +...+.+...++.
T Consensus 80 Iiig~Pv~-~~~~p~~v~~fl~~~--------~l~~k~v~~f~T~g~~~~---g~~~~~~~~~~---~~~~~~~~~~~~~ 144 (160)
T PRK07116 80 IFLGFPIW-WYVAPRIINTFLESY--------DFSGKTVIPFATSGGSGI---GNAEKELKKSY---PDANWKEGRLLNG 144 (160)
T ss_pred EEEECChh-ccccHHHHHHHHHhc--------CCCCCEEEEEEeCCCCCc---CcHHHHHHHHC---CcCccccCeeecC
Confidence 99999999 699999999998753 277899999998 55544 44455555544 3333444444443
Q ss_pred CCCCCchhhHHHHHHHH
Q 006868 136 QHPSGYEGALDPWMRSL 152 (628)
Q Consensus 136 ~~~~g~~~~~~~W~~~l 152 (628)
+ . ..++++.|++++
T Consensus 145 ~-~--~~~~i~~wl~~~ 158 (160)
T PRK07116 145 G-A--SKEEIKEWINKL 158 (160)
T ss_pred C-C--cHHHHHHHHHHc
Confidence 2 1 366899998764
No 111
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=99.13 E-value=1.9e-10 Score=102.34 Aligned_cols=95 Identities=22% Similarity=0.416 Sum_probs=65.4
Q ss_pred EEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCC----CChhHHHHHHHHHhccCc
Q 006868 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGD----TPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~----~p~~~~~F~~~L~~~~~~ 86 (628)
|+|.|.||||++++++|...+. ..-+.+...+. ++.-.+..|++++|||.|+ .|....+|++.-.+.
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~-----~~~i~~~~~~~-~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N~--- 71 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAP-----AIRIPIREISP-DLEVDEPFVLITPTYGFGENDGGVPKQVIRFLENPDNR--- 71 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--S-----EEEE-SSCTTS-TS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHHG---
T ss_pred CEEECCCcCHHHHHHHHcccch-----hcccccccccc-cccCCCCEEEEecccCCCCCCCCCCHHHHHHHHHHHHH---
Confidence 7999999999999999887553 22333333222 3445567999999999999 999999998854333
Q ss_pred ccccCCcEEEEEecCCcChh-HHHHHHHHHHHHH
Q 006868 87 KQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRL 119 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L 119 (628)
....+|+|.||++|. .||.|++.+.+.+
T Consensus 72 -----~~l~GVigSGNrNfg~~f~~aa~~ia~ky 100 (122)
T PF07972_consen 72 -----KLLRGVIGSGNRNFGDNFCLAADKIAEKY 100 (122)
T ss_dssp -----GGEEEEEEEE-GGGGGGTTHHHHHHHHHH
T ss_pred -----hhheeEEecCCcHHHHHHHHHHHHHHHHc
Confidence 367789999999997 7999999999776
No 112
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.13 E-value=7.9e-10 Score=102.66 Aligned_cols=86 Identities=33% Similarity=0.453 Sum_probs=70.4
Q ss_pred EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccc
Q 006868 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (628)
Q Consensus 10 ~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~ 89 (628)
+|+|+|.||||+++|+.|++.|.+.+..+.+.++.. ...++.++|.|||++|+| .|.+|..+.+|++.+...
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~-~~~~~~~yD~vi~gspiy-~g~~~~~~~~fi~~~~~~------ 72 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEE-DEPDLSDYDAVIFGSPIY-AGRIPGEMREFIKKNKDN------ 72 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhh-cccccccCCEEEEEEEEE-CCcCCHHHHHHHHHHHHH------
Confidence 599999999999999999999997754444444321 345788999999999999 799999999999987442
Q ss_pred cCCcEEEEEecCCc
Q 006868 90 LEGVRYAVFGLGDS 103 (628)
Q Consensus 90 l~~~~~aVfGlGds 103 (628)
++++++++|.+|-.
T Consensus 73 l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 73 LKNKKVALFSVGGS 86 (143)
T ss_pred HcCCcEEEEEEeCC
Confidence 78899999998644
No 113
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.13 E-value=2.2e-11 Score=119.06 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=66.3
Q ss_pred cceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCCC----CCCCCEEEEeC
Q 006868 406 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRP----PPSVPLILIGP 480 (628)
Q Consensus 406 R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~lp----~~~~piimIa~ 480 (628)
|.||.|+......|.++|.|+. .-.|+.|+|++ ++++ ||.|.++.|.|+|.+. +.++|+++.|+
T Consensus 202 ~~~~~S~~~~t~rN~~R~sVr~---------~A~G~VS~~~H~~~KV--GD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~ 270 (385)
T KOG3378|consen 202 REYSLSNRVDTCRNQFRISVRR---------VAGGVVSNFVHDNLKV--GDIVGVSPPAGNFVYKRSEENVNRPLLCFAG 270 (385)
T ss_pred HHHHHhhhhhhhccceeEEEee---------hhchhhHHHhhccccc--cceeeccCCCccceeehhhhccCCceEEecC
Confidence 4445544433467899999943 46799999997 7999 9999999999999765 57799999999
Q ss_pred CCChHHHHHHHHHHHH
Q 006868 481 GTGCAPFRGFVEERAI 496 (628)
Q Consensus 481 GtGIAPfrs~l~~~~~ 496 (628)
|+||+|++++++....
T Consensus 271 GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 271 GIGITPLIPIIETALL 286 (385)
T ss_pred CcCccccHHHHHHHHh
Confidence 9999999999998765
No 114
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.11 E-value=4.2e-10 Score=102.21 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=87.9
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
|+++|+|+|.+|+|.++|+.|+.+|.+.|++|++.++.....-++.+++.||+++|-+ .|.......+|++.-...
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~-~~h~~~~~~~Fv~k~~e~--- 76 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIR-YGHFHEAVQSFVKKHAEA--- 76 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchh-hhhhHHHHHHHHHHHHHH---
Confidence 6799999999999999999999999999999999999987755788999999999999 899999999998875443
Q ss_pred ccccCCcEEEEEecCCcChhHH---HHHHHHHHHHHHhcCC
Q 006868 87 KQWLEGVRYAVFGLGDSGYQKF---NFVAKKLDNRLLDLGA 124 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds~y~~f---~~a~~~l~~~L~~lGa 124 (628)
|.++..|+|.++=+ |..+ -.+-..+++.|.+.-.
T Consensus 77 ---L~~kP~A~f~vnl~-a~k~k~~~e~~~yv~kfl~~~~W 113 (175)
T COG4635 77 ---LSTKPSAFFSVNLT-ARKEKRTPETNSYVRKFLMKSPW 113 (175)
T ss_pred ---HhcCCceEEEeehh-hcccccCchHHHHHHHHHhcCCC
Confidence 78888899887532 2222 2233355555554333
No 115
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=99.04 E-value=1.9e-09 Score=95.68 Aligned_cols=129 Identities=16% Similarity=0.291 Sum_probs=90.8
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCC----CCChhHHHHHHHHHh
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQG----DTPDSMKVFWRFLLQ 82 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G----~~p~~~~~F~~~L~~ 82 (628)
+.+.|+|.|.||||.++++++. +.+ +.+.+.... +.+.-.+..|++++|||.| ..|....+|+..-
T Consensus 1 ~~~~v~f~S~SgNt~RFv~kL~--~~~--~~I~~~~~~----~~~~v~epyvlitpTyg~G~~~~~Vp~~vi~FLn~~-- 70 (141)
T COG1780 1 MMLLVYFSSLSGNTHRFVEKLG--LPA--VRIPLNREE----DPIEVDEPYVLITPTYGGGGTVGAVPKQVIRFLNNE-- 70 (141)
T ss_pred CceEEEEEecCccHHHHHHHhC--CCc--eeccccccc----CCccCCCCeEEEeccccCCCccCccCHHHHHHhccc--
Confidence 3478999999999999999987 111 111122111 1245556799999999999 9999999997531
Q ss_pred ccCcccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868 83 KSLSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
+ ...+.-+|.|.|+++|+ .||.|++.+.+++ |.-.++..-+. . ...+-+.+.+|+.++|+...
T Consensus 71 -~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FEL~-G--T~~Dv~~v~~~v~~~~~~~~ 134 (141)
T COG1780 71 -H-----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFELL-G--TAEDVAAVRKGVTEFWKRAP 134 (141)
T ss_pred -c-----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEecc-C--CHHHHHHHHHHHHHHHHhCC
Confidence 1 34578899999999997 7999999998765 55555443221 1 11256788889998887653
No 116
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.03 E-value=1.8e-09 Score=101.58 Aligned_cols=108 Identities=23% Similarity=0.338 Sum_probs=79.8
Q ss_pred EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccc
Q 006868 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (628)
Q Consensus 10 ~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~ 89 (628)
+|+|.|.||||+++|+.|++.|.. ..++++++.... +.++|+|++|++++ .|.+++.+++|++.
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~----~~~~~~~~~~~~-~~~yD~i~lG~w~d-~G~~d~~~~~fl~~---------- 64 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA----KDIVSVEEPPED-LEDYDLIFLGFWID-KGTPDKDMKEFLKK---------- 64 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC----ceeEeccccccC-CCCCCEEEEEcCcc-CCCCCHHHHHHHHH----------
Confidence 589999999999999999998864 478888887643 88999999999999 79999999999886
Q ss_pred cCCcEEEEEecCCc--ChhHHHHHHHHHHHHHHhcCCeEeecceeeeC
Q 006868 90 LEGVRYAVFGLGDS--GYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (628)
Q Consensus 90 l~~~~~aVfGlGds--~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~ 135 (628)
|+|+++++||..-. +=.++....+.+...+.+ + ..+.....|..
T Consensus 65 l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~-~-~~~lg~f~CqG 110 (160)
T PF12641_consen 65 LKGKKVALFGTAGAGPDSEYAKKILKNVEALLPK-G-NEILGTFMCQG 110 (160)
T ss_pred ccCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc-C-CeecceEEeCC
Confidence 45788999997311 112455555555555544 3 33433344443
No 117
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.73 E-value=3.2e-08 Score=92.62 Aligned_cols=119 Identities=26% Similarity=0.294 Sum_probs=95.0
Q ss_pred CcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCC---------------------ccCCCCCCeEEEEEec
Q 006868 7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYD---------------------ARCLPEEDTVIFVVST 63 (628)
Q Consensus 7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~---------------------~~~l~~~~~vi~~~sT 63 (628)
|+|+|++||.. |||+.+|+.+.+.+++.|++++++++.++. .+.+.+.|.+||++|+
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~ 80 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV 80 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE
Confidence 68999999985 999999999999999999999999999861 1123478999999999
Q ss_pred CCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868 64 TGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 64 ~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
| .|.+|..++.|++++.. .....+.++.+++++.|.+.... ..+...+...|..+|+..+..
T Consensus 81 y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 81 Y-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp B-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECC
T ss_pred E-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCC
Confidence 9 99999999999999963 11224889999999887554433 335678888888999987754
No 118
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.54 E-value=3e-07 Score=86.48 Aligned_cols=123 Identities=24% Similarity=0.388 Sum_probs=73.2
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCC---CCC-----------------------------ccCCCCCC
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD---DYD-----------------------------ARCLPEED 55 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~---~~~-----------------------------~~~l~~~~ 55 (628)
|++|+|-|.||||+++|+.|++.+. +.++.+. .++ ..++.+||
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~g-----adi~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD 75 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTG-----ADIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYD 75 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT------EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-S
T ss_pred CEEEEEECCCchHHHHHHHHHHHHC-----CCEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCC
Confidence 5799999999999999999998664 2222221 111 11445899
Q ss_pred eEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeecceeee
Q 006868 56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD 134 (628)
Q Consensus 56 ~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d 134 (628)
.|++|+|++ .|.+|..+..|++.. + ++|+.++.|.+ |.+. ++.+.+.+.+.+. +++ +.+...+.
T Consensus 76 ~I~lG~PvW-~~~~~~pv~tFL~~~---~-----~~gK~v~~F~T~ggs~---~~~~~~~l~~~~~--~a~-i~~g~~~~ 140 (156)
T PF12682_consen 76 TIFLGTPVW-WGTPPPPVRTFLEQY---D-----FSGKTVIPFCTSGGSG---FGNSLEDLKKLCP--GAT-ILEGLAIN 140 (156)
T ss_dssp EEEEEEEEE-TTEE-CHHHHHHHCT---T-----TTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSE-E---EE--
T ss_pred EEEEechHH-cCCCCHHHHHHHHhc---C-----CCCCcEEEEEeeCCCC---hhHHHHHHHHHCC--CCE-eecCeEEe
Confidence 999999999 899999999998742 2 78999999965 3333 3344455554332 343 44544443
Q ss_pred CCCCCCchhhHHHHHHHH
Q 006868 135 DQHPSGYEGALDPWMRSL 152 (628)
Q Consensus 135 ~~~~~g~~~~~~~W~~~l 152 (628)
...- .++++..|+++|
T Consensus 141 ~~~~--~~~~i~~Wl~~i 156 (156)
T PF12682_consen 141 RGSV--SEEEIKEWLKKI 156 (156)
T ss_dssp -S-----HHHHHHHHHHT
T ss_pred CCCc--CHHHHHHHHHhC
Confidence 2211 567899998864
No 119
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.48 E-value=2.8e-06 Score=82.66 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=93.8
Q ss_pred CcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC-----------------CCCCCeEEEEEecCCCC
Q 006868 7 NKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDARC-----------------LPEEDTVIFVVSTTGQG 67 (628)
Q Consensus 7 ~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~-----------------l~~~~~vi~~~sT~g~G 67 (628)
|+|+++.||- .++|.++++.+.+.+.+.|.+++++++.+++..+ +.+.|.+||++|.| .|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y-~~ 79 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY-KA 79 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-CC
Confidence 5799999998 4899999999999999999999999887765422 23679999999999 99
Q ss_pred CCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868 68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 68 ~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
.+|.-++.|++|+.. ..+.|+.+++++.| ...++.-..-..+...|..+||..+..
T Consensus 80 s~pg~LKn~iD~l~~-----~~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~~~ 135 (191)
T PRK10569 80 SFSGALKTLLDLLPE-----RALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEILH 135 (191)
T ss_pred CCCHHHHHHHHhCCh-----hhhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeecCc
Confidence 999999999999832 34889999999998 445544433356778888999986543
No 120
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.46 E-value=2.7e-07 Score=86.61 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=48.5
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCCcc-ccHHHHHHhHhcC--CCcccCCCCcEEEEEec
Q 006868 474 PLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDF-LYRELWLSHSLND--GVFSEAKGGGFYVAFSR 548 (628)
Q Consensus 474 piimIa~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~d~-ly~~el~~~~~~~--g~l~~~~~~~~~~a~Sr 548 (628)
.++|||||+||+|+.+++++...... .....++.|+|-+|+.+++ .|.++|.++.... ..+ ++.+.+++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~------~~~iyvT~ 76 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNV------EVHIYVTR 76 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSE------EEEEEETT
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccc------eEEEEEcC
Confidence 58999999999999999999976543 1135789999999999954 5675665554331 355 67777777
Q ss_pred CCC
Q 006868 549 KQP 551 (628)
Q Consensus 549 ~~~ 551 (628)
+..
T Consensus 77 ~~~ 79 (156)
T PF08030_consen 77 ESS 79 (156)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 121
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=98.42 E-value=4.7e-06 Score=79.79 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=91.3
Q ss_pred cEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC-----------------CCCCeEEEEEecCCCCC
Q 006868 8 KLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-----------------PEEDTVIFVVSTTGQGD 68 (628)
Q Consensus 8 ~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l-----------------~~~~~vi~~~sT~g~G~ 68 (628)
+|+++.||- .|+|.++++.+.+.+.+.|..++.+++.+++..++ .+.|.+||++|.| +|.
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~~s 79 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-KAS 79 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-cCC
Confidence 588999995 78999999999999998898888888877553222 2679999999999 999
Q ss_pred CChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 69 ~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
+|...+.|++++.. ..+.++.+++++.| ..+..+...-..+...|..+|+..+.+.
T Consensus 80 ip~~LK~~iD~~~~-----~~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~~~~ 135 (171)
T TIGR03567 80 YSGVLKALLDLLPQ-----RALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHILPG 135 (171)
T ss_pred CCHHHHHHHHhCCh-----hhhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccccce
Confidence 99999999999842 23889999998887 4455544333468888999999654443
No 122
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.39 E-value=8e-08 Score=83.10 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=55.8
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F 466 (628)
..|||++...++. ...|+|||+|.| ...+.++|+|+. .+.|..|+||+++++ ||.|.+.+|.|.|
T Consensus 30 ~~pGQ~v~v~~~~~~~~~~R~yS~~s~~-~~~~~~~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 30 FKPGQFVSVRVPINGKQVSRPYSPASSP-DDKGYLEFAIKR---------YPNGRVSRYLHQLKP--GDEVEIRGPYGNF 97 (99)
T ss_dssp STTT-EEEEEEEETTEEEEEEEEBCSST-TSSSEEEEEEEE---------CTTSHHHHHHHTSCT--TSEEEEEEEESSE
T ss_pred cCcceEEEEEEccCCcceecceeEeeec-CCCCcEEEEEEe---------ccCCHHHHHHHhCCC--CCEEEEEEccccc
Confidence 3689999888882 246999999999 567799999944 478999999999999 9999999999998
Q ss_pred C
Q 006868 467 P 467 (628)
Q Consensus 467 ~ 467 (628)
.
T Consensus 98 ~ 98 (99)
T PF00970_consen 98 T 98 (99)
T ss_dssp E
T ss_pred C
Confidence 5
No 123
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.35 E-value=8.7e-07 Score=103.41 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=82.0
Q ss_pred CHhhHhhhCCCC---CCCHHHHHHhcCC-----C-cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC
Q 006868 378 TVLEVLEDFPSV---QMPIDWLVQLVPP-----L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG 448 (628)
Q Consensus 378 ~~~d~l~~f~~~---~~p~~~l~~~lp~-----~-~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~ 448 (628)
+++.+....|.+ ..||||++...+. + .||++||++.+ ...+.++|+|.+| |.+|.+|++
T Consensus 804 ~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD-~e~g~It~i~rvV-----------GkgT~~Ls~ 871 (1028)
T PRK06567 804 KTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDID-VEKGLISFIVFEV-----------GKSTSLCKT 871 (1028)
T ss_pred CEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccC-CCCCEEEEEEEEE-----------ChHHHHHhc
Confidence 444444445531 3599999887742 3 67899999986 4568899999776 999999999
Q ss_pred cCCCCCceEEEEeecC-CCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEc
Q 006868 449 LDPQQGIYIPAWFQKG-SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFG 511 (628)
Q Consensus 449 l~~~~G~~v~i~~~~g-~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G 511 (628)
+++ |+.|.+.||.| .|.++. ...+++||+|+|+|| +.++....+ .++..|.+
T Consensus 872 l~~--Gd~v~v~GPLG~pF~i~~-~k~vLLVgGGVGiAp---Lak~Lk~~G-----~~V~~~~~ 924 (1028)
T PRK06567 872 LSE--NEKVVLMGPTGSPLEIPQ-NKKIVIVDFEVGNIG---LLKVLKENN-----NEVIFVTY 924 (1028)
T ss_pred CCC--CCEEEEEcccCCCCCCCC-CCeEEEEEccccHHH---HHHHHHHCC-----CeEEEEEc
Confidence 999 99999999998 487763 357999999999997 444444433 44555544
No 124
>PRK00170 azoreductase; Reviewed
Probab=98.24 E-value=2e-05 Score=77.37 Aligned_cols=147 Identities=10% Similarity=0.056 Sum_probs=101.3
Q ss_pred CCcEEEEEECC--c-chHHHHHHHHHHHHHhC--CCCcEEeeCCCCCc--------------------------------
Q 006868 6 RNKLLILYASQ--T-GNALDAAERIGRESERR--GCPVVVRPVDDYDA-------------------------------- 48 (628)
Q Consensus 6 ~~~v~I~Y~S~--t-Gnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~-------------------------------- 48 (628)
||+|+|++||- . |+|.++|+.+.+.+++. |..++++++.+.+.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 68899999996 3 89999999999999988 88899999865432
Q ss_pred -cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc--------CcccccCCcEEEEEecCCcCh--hHHHHHHHHHHH
Q 006868 49 -RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSGY--QKFNFVAKKLDN 117 (628)
Q Consensus 49 -~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~--------~~~~~l~~~~~aVfGlGds~y--~~f~~a~~~l~~ 117 (628)
+++.+.|.|||++|.| .+.+|.-++.|++++.... .+...++|+++.++......+ ..+..+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 1134679999999999 9999999999999975321 112347899998888632222 122445666777
Q ss_pred HHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868 118 RLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 118 ~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
.|.-+|++.+.. ..+..... ..+.-+.|.++....+
T Consensus 160 ~~~~~G~~~~~~-~~~~g~~~--~~~~~~~~~~~a~~~~ 195 (201)
T PRK00170 160 FLGFIGITDVEF-VFAEGHNY--GPEKAAKIISAAKAAA 195 (201)
T ss_pred HHHhcCCCceEE-EEEecccC--CchHHHHHHHHHHHHH
Confidence 888899885543 23222211 2233455665554444
No 125
>PRK06934 flavodoxin; Provisional
Probab=98.20 E-value=8.9e-06 Score=80.31 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=86.4
Q ss_pred cCCCcEEEEEECCc------------------------chHHHHHHHHHHHHHhCCCCcEEeeC--CCC-----------
Q 006868 4 EKRNKLLILYASQT------------------------GNALDAAERIGRESERRGCPVVVRPV--DDY----------- 46 (628)
Q Consensus 4 ~~~~~v~I~Y~S~t------------------------Gnte~~A~~l~~~l~~~g~~v~~~~l--~~~----------- 46 (628)
....+++|+|-|.+ |||+++|+.|++.+...=++++..+. +++
T Consensus 33 ~~~~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~GnTk~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~ 112 (221)
T PRK06934 33 RNARRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVLGSTQYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEV 112 (221)
T ss_pred ccCCceEEEEEeccCCcccccccccccccccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhh
Confidence 35678999999988 89999999999987532222222211 011
Q ss_pred ----C------ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHH
Q 006868 47 ----D------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKL 115 (628)
Q Consensus 47 ----~------~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l 115 (628)
. ..++.+||.|+|+.|.+ -|.+|.-++.|++.. . ++|+.++.|.. |-+.. ..+.+.+
T Consensus 113 ~~~~~P~L~~~~~dl~~YD~I~IG~PIW-wg~~P~~V~tFLe~~---d-----~~GK~I~pF~T~ggsg~---g~s~~~i 180 (221)
T PRK06934 113 KEGGRPEMREKIQNLADYDQIFIGYPIW-WYKMPMVMYSFFEQH---D-----FSGKTLIPFTTHGGSRF---SDSLREI 180 (221)
T ss_pred hcCCCHHHHHHHHhHHhCCEEEEEcchh-hccccHHHHHHHHhc---C-----CCCCEEEEEEecCCCCc---cchHHHH
Confidence 1 13455899999999999 899999999998754 2 78999999976 22333 3334444
Q ss_pred HHHHHhcCCeEeecceeeeCC--CCCCchhhHHHHHHHH
Q 006868 116 DNRLLDLGATAVVERGLGDDQ--HPSGYEGALDPWMRSL 152 (628)
Q Consensus 116 ~~~L~~lGa~~v~~~~~~d~~--~~~g~~~~~~~W~~~l 152 (628)
.+.+. +++.+.+...+... .+...++++..|++++
T Consensus 181 ~~l~~--~a~~v~~Gl~i~~~~~~~~~~~~~I~~Wl~~l 217 (221)
T PRK06934 181 KRLQP--NAQLVTQGLAISRNDVTDDDTPKEIINWLNTL 217 (221)
T ss_pred HHHcC--CcceeccceeeecCcccccchHHHHHHHHHHc
Confidence 43322 44344444333221 1112467899998764
No 126
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.20 E-value=4.5e-06 Score=95.71 Aligned_cols=125 Identities=20% Similarity=0.322 Sum_probs=87.6
Q ss_pred CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcC----C--CC----Cce
Q 006868 391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLD----P--QQ----GIY 456 (628)
Q Consensus 391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~----~--~~----G~~ 456 (628)
-|||++...+|. ++..+|||+|+| +++.+.+.|+.. |--|.-|. .+. + .+ .-+
T Consensus 383 ~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~ 449 (646)
T KOG0039|consen 383 KPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPK 449 (646)
T ss_pred CCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCce
Confidence 479999888885 589999999999 788999999653 44444442 111 1 01 346
Q ss_pred EEEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-------------CCCCeEEEEcCCCCCccc-cH
Q 006868 457 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-------------PAAPIIFFFGCRNEDDFL-YR 521 (628)
Q Consensus 457 v~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-------------~~~~~~L~~G~R~~~d~l-y~ 521 (628)
+.+.||.|.=.-+ ..-..++|||+|.|++||.+++++...+...+ ..+++..+|-||...++. +.
T Consensus 450 i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~ 529 (646)
T KOG0039|consen 450 ILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFK 529 (646)
T ss_pred EEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHH
Confidence 8889998853333 33346799999999999999999998654221 246677777788877653 55
Q ss_pred HHHHHhH
Q 006868 522 ELWLSHS 528 (628)
Q Consensus 522 ~el~~~~ 528 (628)
+.+.+..
T Consensus 530 ~~l~~v~ 536 (646)
T KOG0039|consen 530 GLLTEVE 536 (646)
T ss_pred HHHHHHH
Confidence 5555554
No 127
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=98.15 E-value=1.9e-05 Score=75.78 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=87.0
Q ss_pred cEEEEEECC--cchHHHHHHHHHHHHH-hCCCCcEEeeCCCCCc-------------------cCCCCCCeEEEEEecCC
Q 006868 8 KLLILYASQ--TGNALDAAERIGRESE-RRGCPVVVRPVDDYDA-------------------RCLPEEDTVIFVVSTTG 65 (628)
Q Consensus 8 ~v~I~Y~S~--tGnte~~A~~l~~~l~-~~g~~v~~~~l~~~~~-------------------~~l~~~~~vi~~~sT~g 65 (628)
+|+++.||. .|+|..+|+.+.+.+. +.|.+++++++.++.+ +.+.+.|.+||++|.|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY- 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC-
Confidence 589999998 5999999999999986 5688888888866521 0123789999999999
Q ss_pred CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
+|.+|..++.|++++.. ..+.|+++++++.|..... ...+-..+...|..+|+..+..
T Consensus 80 ~~s~~~~LKn~lD~~~~-----~~l~~K~~~~v~~~g~~~~-~~~~~~~l~~~~~~l~~~~~~~ 137 (174)
T TIGR03566 80 RGSYTGLFKHLFDLVDP-----NALIGKPVLLAATGGSERH-ALMVEHQLRPLFGFFQALTLPT 137 (174)
T ss_pred cCcCcHHHHHHHHhcCH-----hHhCCCEEEEEEecCCccc-hHHHHHHHHHHHHHhCcccccc
Confidence 99999999999998743 2388999999998754332 1123345667777788775533
No 128
>PRK01355 azoreductase; Reviewed
Probab=98.13 E-value=5.5e-05 Score=74.27 Aligned_cols=152 Identities=11% Similarity=0.129 Sum_probs=103.5
Q ss_pred CCcEEEEEECCc----chHHHHHHHHHHHHHhC--CCCcEEeeCCCCCcc-----------------------CCCCCCe
Q 006868 6 RNKLLILYASQT----GNALDAAERIGRESERR--GCPVVVRPVDDYDAR-----------------------CLPEEDT 56 (628)
Q Consensus 6 ~~~v~I~Y~S~t----Gnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~-----------------------~l~~~~~ 56 (628)
|++|+|+.||-. |+|..+|+.+.+.+++. |.+++.+++.+.... .+.+.|.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 689999999984 89999999999999874 577888888664431 1226799
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhccC-----------cccccCCcEEEEEecCCcChh--HHHHHHHHHHHHHHhcC
Q 006868 57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSL-----------SKQWLEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLG 123 (628)
Q Consensus 57 vi~~~sT~g~G~~p~~~~~F~~~L~~~~~-----------~~~~l~~~~~aVfGlGds~y~--~f~~a~~~l~~~L~~lG 123 (628)
|||++|.| .+.+|..++.|++++..... +...+.++++.|+........ .+..+...+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 99999999999999854310 113477888877655432221 13445677888888899
Q ss_pred CeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHh
Q 006868 124 ATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158 (628)
Q Consensus 124 a~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~ 158 (628)
++.+............-..+...+|+++-.+.+.+
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 98664433322221100113366777766666554
No 129
>PRK09739 hypothetical protein; Provisional
Probab=98.09 E-value=5e-05 Score=74.56 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=100.2
Q ss_pred CCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc---------------------------cCCCCCCe
Q 006868 6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDA---------------------------RCLPEEDT 56 (628)
Q Consensus 6 ~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~---------------------------~~l~~~~~ 56 (628)
||+|+|++||- .|+|..+++.+.+.+.+.|.+++++++.+... +.+.+.|.
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA 82 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence 88999999997 57899999999999999998888888765321 12337899
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHhccCc---ccccCCcEEEEEecCCcChhHH-----HH-HHHHHH-HHHHhcCCeE
Q 006868 57 VIFVVSTTGQGDTPDSMKVFWRFLLQKSLS---KQWLEGVRYAVFGLGDSGYQKF-----NF-VAKKLD-NRLLDLGATA 126 (628)
Q Consensus 57 vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~---~~~l~~~~~aVfGlGds~y~~f-----~~-a~~~l~-~~L~~lGa~~ 126 (628)
|||++|.| .+.+|.-.+.|++++...... ...+.+++..++.+....+..| .. +...+. ..+.-+|.+.
T Consensus 83 iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~~ 161 (199)
T PRK09739 83 LVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGIED 161 (199)
T ss_pred EEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCccc
Confidence 99999999 999999999999987533211 1247788887776533344433 22 223444 4445578765
Q ss_pred eecceeeeCCCC---CCchhhHHHHHHHHHHHHH
Q 006868 127 VVERGLGDDQHP---SGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 127 v~~~~~~d~~~~---~g~~~~~~~W~~~l~~~l~ 157 (628)
+........... ....+..+.|.++..+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 195 (199)
T PRK09739 162 SDVTFLYNTLVFDGEELHASHYQSLLSQAREMVD 195 (199)
T ss_pred cceEEEecccccccccCCHHHHHHHHHHHHHHHH
Confidence 433322222100 1135567788887666553
No 130
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=98.02 E-value=1.9e-05 Score=78.00 Aligned_cols=120 Identities=23% Similarity=0.092 Sum_probs=89.4
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc----------------------cC----CCCCCeEEE
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----------------------RC----LPEEDTVIF 59 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----------------------~~----l~~~~~vi~ 59 (628)
+..|.+.|-| +|||+.+++.+.+.+++.|.+++++.+.+.+. .+ +.++|.+||
T Consensus 3 i~~I~gs~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 3 ILGINGSPRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred eeEEEecCCC-CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 4566777777 89999999999999999999999998886521 11 345799999
Q ss_pred EEecCCCCCCChhHHHHHHH-HHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 60 VVSTTGQGDTPDSMKVFWRF-LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 60 ~~sT~g~G~~p~~~~~F~~~-L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
++||| .|.++..++.|++. ...... ...+.++..++|..+-+.-..-..+...+...+...|...+.
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~~-~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~ 149 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLWA-PGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVG 149 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhcc-cchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEec
Confidence 99999 99999999999998 332222 245888888888776544332224556777777777776553
No 131
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.93 E-value=0.00011 Score=72.05 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=107.5
Q ss_pred CcEEEEEECCcc---hHHHHHHHHHHHHHhCC-CCcEEeeCCCC-------------------C--------ccCCCCCC
Q 006868 7 NKLLILYASQTG---NALDAAERIGRESERRG-CPVVVRPVDDY-------------------D--------ARCLPEED 55 (628)
Q Consensus 7 ~~v~I~Y~S~tG---nte~~A~~l~~~l~~~g-~~v~~~~l~~~-------------------~--------~~~l~~~~ 55 (628)
|+|+|++||-.+ ++.++++.+.+.+++.| .++++++|... . .+.+...|
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD 80 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWAD 80 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSS
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcC
Confidence 689999999987 58999999999999999 88999999874 0 13445789
Q ss_pred eEEEEEecCCCCCCChhHHHHHHHHHhccC----------cccccCCcEEEEEec-CCcC--hh-------HHHHHHHHH
Q 006868 56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSL----------SKQWLEGVRYAVFGL-GDSG--YQ-------KFNFVAKKL 115 (628)
Q Consensus 56 ~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~----------~~~~l~~~~~aVfGl-Gds~--y~-------~f~~a~~~l 115 (628)
.|||++|.| .+.+|.-++.|++.+..... ....|.|+++.++-. |... |. .+..+...+
T Consensus 81 ~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~ 159 (199)
T PF02525_consen 81 HIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYL 159 (199)
T ss_dssp EEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHH
T ss_pred cceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHH
Confidence 999999999 99999999999998744322 134688988887654 4442 22 345566668
Q ss_pred HHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868 116 DNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 116 ~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
...++-+|++.+...........+ .++.++++++++-+.|
T Consensus 160 ~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 160 RGILKFCGIKDVESFSFEGVDNPD-REEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHTTEEEEEEEEEESTTTCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeeEEEEeCCCCCC-hHHHHHHHHHHHHhhC
Confidence 888889999988665443433222 3677888888877654
No 132
>PRK13556 azoreductase; Provisional
Probab=97.83 E-value=0.00041 Score=68.55 Aligned_cols=148 Identities=11% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCcEEEEEECC----cchHHHHHHHHHHHHHhC--CCCcEEeeCCCCCc-------------------------------
Q 006868 6 RNKLLILYASQ----TGNALDAAERIGRESERR--GCPVVVRPVDDYDA------------------------------- 48 (628)
Q Consensus 6 ~~~v~I~Y~S~----tGnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~------------------------------- 48 (628)
|++|+|+.+|- .++|.++++.+.+.+.+. |.+|+++++.+.+.
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 67899999996 478999999999999875 77888888863211
Q ss_pred ----cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcCh-----hHHHHH
Q 006868 49 ----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGY-----QKFNFV 111 (628)
Q Consensus 49 ----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y-----~~f~~a 111 (628)
.++.+.|.|||++|-| ++.+|.-.+.+++++..... +.+.+.++++.|+...-..| ..+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 0122679999999999 99999999999999876421 12358899999987633345 234445
Q ss_pred HHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006868 112 AKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 112 ~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
...+...|.-+|++.+- ...+.... ...+..+.+.++....+.
T Consensus 160 ~~~l~~il~~~G~~~~~-~v~~~~~~--~~~~~~~~~~~~a~~~~~ 202 (208)
T PRK13556 160 VKYVASMMGFFGVTNME-TVVIEGHN--QFPDKAEEIITAGLEEAA 202 (208)
T ss_pred HHHHHHHHHhcCCCcee-EEEEehhh--cChhHHHHHHHHHHHHHH
Confidence 56788888889988653 34443221 123334455554444443
No 133
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=97.63 E-value=0.00083 Score=66.55 Aligned_cols=122 Identities=14% Similarity=0.031 Sum_probs=92.3
Q ss_pred cCCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC---------------CCCCCeEEEEEecCCC
Q 006868 4 EKRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDARC---------------LPEEDTVIFVVSTTGQ 66 (628)
Q Consensus 4 ~~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~---------------l~~~~~vi~~~sT~g~ 66 (628)
+.+++|+++.||.- =++..+|+.+.+.+.+.|++++++++.+++.-+ +...|.+||++|-| +
T Consensus 24 ~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n 102 (219)
T TIGR02690 24 PHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-H 102 (219)
T ss_pred CCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-c
Confidence 45789999999874 356789999999998789999999887654211 12689999999999 9
Q ss_pred CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
|.+|...+.+++|+....-+...+.+|.++|+|.. .... --.+...+...|..+|+..+-
T Consensus 103 ~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~~-g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 103 GAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGSQ-SFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred cCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC-CcHh-HHHHHHHHHHHHHHCCCcccc
Confidence 99999999999999653211124889999999853 1111 234568888889899987653
No 134
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00086 Score=67.64 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=107.7
Q ss_pred CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEEEEeCCC
Q 006868 403 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT 482 (628)
Q Consensus 403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~piimIa~Gt 482 (628)
...|.|||.+-. ...+++.|-|.+ +...|.+|.|-.+.++ ||+|.+.+|.|.+..+....-++|||==|
T Consensus 85 ~~~R~YTiR~~d-~~~~e~~vDfVl--------H~~~gpas~WA~~a~~--GD~l~i~GP~g~~~p~~~~~~~lLigDet 153 (265)
T COG2375 85 PPQRTYTIRAVD-AAAGELDVDFVL--------HGEGGPASRWARTAQP--GDTLTIMGPRGSLVPPEAADWYLLIGDET 153 (265)
T ss_pred CCcccceeeeec-ccccEEEEEEEE--------cCCCCcchhhHhhCCC--CCEEEEeCCCCCCCCCCCcceEEEecccc
Confidence 368999998653 344555555433 2367999999999999 99999999999977665566899999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHH
Q 006868 483 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE 562 (628)
Q Consensus 483 GIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~ 562 (628)
++-.+.++|++.-.. .+...|.-.++..|.. + +... +.+ ++.... |++.. +.| ++..
T Consensus 154 AlPAIa~iLE~lp~~------~~~~a~lev~d~ad~~---~---l~~~-~~l------~~~Wl~-r~~~~--~~~-ll~~ 210 (265)
T COG2375 154 ALPAIARILETLPAD------TPAEAFLEVDDAADRD---E---LPSP-DDL------ELEWLA-RDDAP--TEQ-LLAA 210 (265)
T ss_pred chHHHHHHHHhCCCC------CceEEEEEeCChHHhh---c---cCCC-Cce------eEEEec-CCCcc--chH-HHHH
Confidence 999999999987553 3457788888777652 2 2222 444 444443 33321 211 2222
Q ss_pred cHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHH
Q 006868 563 QSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 608 (628)
Q Consensus 563 ~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~ 608 (628)
...+. .+.. +.++||.|-. .+.+. +++.|.++.|++...
T Consensus 211 a~~~~--~~P~~~~~vwiagE~-~~v~~----~Rk~L~~e~g~dk~~ 250 (265)
T COG2375 211 ALAQA--ALPAGDYYVWIAGEA-SAVKA----IRKFLRNERGFDKSR 250 (265)
T ss_pred HHhcc--cCCCCceEEEEeccH-HHHHH----HHHHHhhhcCCCHHH
Confidence 21110 1122 4799999987 66554 455555566776543
No 135
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=97.16 E-value=0.014 Score=56.29 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=97.6
Q ss_pred cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----------CCCCCCeEEEEEecCCCCCCChhH
Q 006868 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----------CLPEEDTVIFVVSTTGQGDTPDSM 73 (628)
Q Consensus 4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----------~l~~~~~vi~~~sT~g~G~~p~~~ 73 (628)
+.||+++|++++-.+.. ..+++....+.+.+..+++.++...-+. .|...|.|||..|.| ...+|.-+
T Consensus 3 ~~~~kiLiI~aHP~~~~-S~~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa~L 80 (184)
T PRK04930 3 SQPPKVLLLYAHPESQD-SVANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPALL 80 (184)
T ss_pred CCCCEEEEEECCCCccc-CHHHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcHHH
Confidence 35789999999998652 3344444444444567888888664221 234789999999999 89999999
Q ss_pred HHHHHHHHhccCc----ccccCCcEEEEEe-cCCc--ChhH--HHH-----HHHHHHHHHHhcCCeEeecceeeeCCCCC
Q 006868 74 KVFWRFLLQKSLS----KQWLEGVRYAVFG-LGDS--GYQK--FNF-----VAKKLDNRLLDLGATAVVERGLGDDQHPS 139 (628)
Q Consensus 74 ~~F~~~L~~~~~~----~~~l~~~~~aVfG-lGds--~y~~--f~~-----a~~~l~~~L~~lGa~~v~~~~~~d~~~~~ 139 (628)
+.+++........ ...++|+++.++- .|.. .|.. ++. .-.-+...+.-+|.+.+-+....+...
T Consensus 81 K~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~-- 158 (184)
T PRK04930 81 KEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR-- 158 (184)
T ss_pred HHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC--
Confidence 9999887653221 1248899888864 3443 2321 221 223334445567988776655444432
Q ss_pred CchhhHHHHHHHHHHHHHhh
Q 006868 140 GYEGALDPWMRSLWRRLHQI 159 (628)
Q Consensus 140 g~~~~~~~W~~~l~~~l~~~ 159 (628)
..+++.++|+++..+.|...
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 159 QSPEELASHARAYGDWLANP 178 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhh
Confidence 24567888888877777543
No 136
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=97.10 E-value=0.0012 Score=60.99 Aligned_cols=127 Identities=23% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC---------------------CccCCCCCCeEEEEEecC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---------------------DARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~---------------------~~~~l~~~~~vi~~~sT~ 64 (628)
|.+|.|+|-|.+|.-+.+|+.+.+.++..|-+.+++.+.+. +++.|.++|.++|+.||-
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTR 80 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIESAGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTR 80 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhccCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeeccccc
Confidence 46899999999999999999999999877657777665542 233455899999999999
Q ss_pred CCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeC
Q 006868 65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDD 135 (628)
Q Consensus 65 g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~ 135 (628)
.|.+|..++.||+.--.. -....|.|+..++|=.+-+.=+-=-..+..--..|..+|.- +.|++.-+.
T Consensus 81 -fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmi-fVPlGYkn~ 148 (203)
T KOG3135|consen 81 -FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMI-FVPLGYKNF 148 (203)
T ss_pred -ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceE-EEecccchh
Confidence 899999999999851110 01234889999998654321111111123333456677754 457766543
No 137
>PRK13555 azoreductase; Provisional
Probab=97.01 E-value=0.017 Score=57.04 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=87.9
Q ss_pred CCcEEEEEECCc----chHHHHHHHHHHHHHhCC--CCcEEeeCCCCCc-------------------------------
Q 006868 6 RNKLLILYASQT----GNALDAAERIGRESERRG--CPVVVRPVDDYDA------------------------------- 48 (628)
Q Consensus 6 ~~~v~I~Y~S~t----Gnte~~A~~l~~~l~~~g--~~v~~~~l~~~~~------------------------------- 48 (628)
|++++++++|-. -.+.++|+.+.+.+++.+ ..|+..||-+.+.
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 678999999943 568899999999998776 6788888754211
Q ss_pred ----cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc--------CcccccCCcEEEEEecCCcChhH-----HHHH
Q 006868 49 ----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSGYQK-----FNFV 111 (628)
Q Consensus 49 ----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~--------~~~~~l~~~~~aVfGlGds~y~~-----f~~a 111 (628)
+++...|.|||++|-| ++.+|.-.+.|++++.... .+.+.++|++..|++.....|.. ....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 0122579999999999 9999999999999987541 12245889999999773333532 1223
Q ss_pred HHHHHHHHHhcCCeEe
Q 006868 112 AKKLDNRLLDLGATAV 127 (628)
Q Consensus 112 ~~~l~~~L~~lGa~~v 127 (628)
...+...|.-+|.+.+
T Consensus 160 ~~yl~~il~~~Gi~~v 175 (208)
T PRK13555 160 VNYVTTVLGFWGITNP 175 (208)
T ss_pred HHHHHHHHHhcCCCce
Confidence 4677778888898744
No 138
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=95.95 E-value=0.19 Score=48.64 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=81.8
Q ss_pred CcEEEEEECCc--chHHHHHHHHHHHHHhCCCC-cEEeeCC----CCCcc--C-----------CCCCCeEEEEEecCCC
Q 006868 7 NKLLILYASQT--GNALDAAERIGRESERRGCP-VVVRPVD----DYDAR--C-----------LPEEDTVIFVVSTTGQ 66 (628)
Q Consensus 7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~-v~~~~l~----~~~~~--~-----------l~~~~~vi~~~sT~g~ 66 (628)
|+|++++||.. --+..+|+.+.+.+...+.. +...+++ +.+.+ . +...|.+||+||.| +
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY-n 79 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY-N 79 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc-C
Confidence 57999999976 44678899999998877643 2222221 11111 1 23689999999999 9
Q ss_pred CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
|..|.-.+..++||... .+.++.+++++.+-.... .-.+...+...|..+|+..+..
T Consensus 80 ~s~pg~lKnaiD~l~~~-----~~~~Kpv~~~~~s~g~~~-~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 80 GSYPGALKNAIDWLSRE-----ALGGKPVLLLGTSGGGAG-GLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred CCCCHHHHHHHHhCCHh-----HhCCCcEEEEecCCCchh-HHHHHHHHHHHHHhcCceeccc
Confidence 99999999999998654 388999888886533322 2234577778888888876644
No 139
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=94.75 E-value=0.66 Score=44.53 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=90.6
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----------CCCCCCeEEEEEecCCCCCCChhHHHHHH
Q 006868 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----------CLPEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~ 78 (628)
|+|+++.-......+-+.|.+.+.+. ..|++.+|.+..+. .|...|.|||..|-| ...+|.-.+.+++
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~-~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~wiD 79 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL-EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLWID 79 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc-CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHHHH
Confidence 89999998876555666666666643 35888887653321 234789999999999 8999999999998
Q ss_pred HHHhccC----cccccCCcEE-EEEecCCc--Chh-----HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHH
Q 006868 79 FLLQKSL----SKQWLEGVRY-AVFGLGDS--GYQ-----KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALD 146 (628)
Q Consensus 79 ~L~~~~~----~~~~l~~~~~-aVfGlGds--~y~-----~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~ 146 (628)
..-.... ....++|+++ .++..|.. .|. .+.....-+...+.-+|++.+-+........ -.+++++
T Consensus 80 ~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~--~~~~~~~ 157 (176)
T PRK00871 80 KVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFI--CDDETLE 157 (176)
T ss_pred HHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeecc--CCHHHHH
Confidence 7654322 1234788876 44555654 332 1233345556666678999776654322211 1244555
Q ss_pred HHHHHHHHHHH
Q 006868 147 PWMRSLWRRLH 157 (628)
Q Consensus 147 ~W~~~l~~~l~ 157 (628)
+.+++..+.|.
T Consensus 158 ~~~~~~~~~L~ 168 (176)
T PRK00871 158 GQARHYKQRLL 168 (176)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 140
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=93.05 E-value=1.6 Score=42.34 Aligned_cols=150 Identities=11% Similarity=0.092 Sum_probs=97.0
Q ss_pred CcEEEEEECCc-chHHHHHHHHHHHHHhCCCCcEEeeCCC-------------CC------ccCCCCCCeEEEEEecCCC
Q 006868 7 NKLLILYASQT-GNALDAAERIGRESERRGCPVVVRPVDD-------------YD------ARCLPEEDTVIFVVSTTGQ 66 (628)
Q Consensus 7 ~~v~I~Y~S~t-Gnte~~A~~l~~~l~~~g~~v~~~~l~~-------------~~------~~~l~~~~~vi~~~sT~g~ 66 (628)
|+|+|+||--- .-+...++.+.+.+.+.|+++...++.. +. .+.|...|.|||.-|.| =
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw-W 79 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW-W 79 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch-h
Confidence 67999999986 5556666666667766666554333211 11 11234789999999999 8
Q ss_pred CCCChhHHHHHHHHHhccC----cc----cccCCcEEEEEecCCcChhHHHHHH---------HHHHHHHHhcCCeEeec
Q 006868 67 GDTPDSMKVFWRFLLQKSL----SK----QWLEGVRYAVFGLGDSGYQKFNFVA---------KKLDNRLLDLGATAVVE 129 (628)
Q Consensus 67 G~~p~~~~~F~~~L~~~~~----~~----~~l~~~~~aVfGlGds~y~~f~~a~---------~~l~~~L~~lGa~~v~~ 129 (628)
+..|.-.+.+++..-.... .. +.|.|+++.++.+-...-..|...+ ..+.-.+.-+|...+-+
T Consensus 80 ~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~ 159 (189)
T COG2249 80 YSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWLPP 159 (189)
T ss_pred ccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccccc
Confidence 8899999999988654421 11 4588998888776433222222222 22334456678777666
Q ss_pred ceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868 130 RGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (628)
Q Consensus 130 ~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (628)
......... .++....|.+++.+.+.+.
T Consensus 160 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 160 FTFYGADVI--DDETRAAYLERYRAHLKEI 187 (189)
T ss_pred eeEeecccC--CHHHHHHHHHHHHHHHHhh
Confidence 655555432 6789999999988887654
No 141
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=92.74 E-value=0.087 Score=47.01 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=30.9
Q ss_pred cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006868 404 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 404 ~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F 466 (628)
..|.|||.+.. ...+++.|-|.+. ...|.+|.|..+.++ ||.|.+.+|.|.|
T Consensus 66 ~~R~YTvR~~d-~~~~~l~iDfv~H--------g~~Gpas~WA~~A~p--Gd~v~v~gP~g~~ 117 (117)
T PF08021_consen 66 VMRTYTVRRFD-PETGELDIDFVLH--------GDEGPASRWARSARP--GDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEE--EEE-TT--EEEEEEE----------SS--HHHHHHHH--T--T-EEEEEEEE---
T ss_pred CCCCcCEeeEc-CCCCEEEEEEEEC--------CCCCchHHHHhhCCC--CCEEEEeCCCCCC
Confidence 68999999875 3455666655332 334999999999999 9999999999887
No 142
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=91.28 E-value=0.033 Score=48.66 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=0.0
Q ss_pred CCHHHHHHhcCCC-----cccceeeccCCCCCCCeEEEEEE
Q 006868 391 MPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVS 426 (628)
Q Consensus 391 ~p~~~l~~~lp~~-----~~R~YSIaSsp~~~~~~i~l~V~ 426 (628)
-|||++...+|.+ +..+|||+|+| .++.+.|+|+
T Consensus 31 ~pGq~v~l~~p~~s~~~~q~HPFTIas~~--~~~~i~l~ik 69 (105)
T PF08022_consen 31 KPGQYVFLSFPSISKWFWQWHPFTIASSP--EDNSITLIIK 69 (105)
T ss_dssp -----------------------------------------
T ss_pred CCceEEEEEEcCcCcCcccccccEeeccC--CCCEEEEEEE
Confidence 5899999999864 56699999998 4788998884
No 143
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=89.10 E-value=10 Score=36.68 Aligned_cols=117 Identities=16% Similarity=0.137 Sum_probs=69.3
Q ss_pred CCcEEEE----EECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeE-EEEEecCCCCC---CChhHHHHH
Q 006868 6 RNKLLIL----YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTV-IFVVSTTGQGD---TPDSMKVFW 77 (628)
Q Consensus 6 ~~~v~I~----Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~v-i~~~sT~g~G~---~p~~~~~F~ 77 (628)
|++|.|+ +-+.+|--|.+|+.|+..+.+.|+++++....+........+..+ ++-.++-..|. ..-++..++
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~ 80 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGSAESIIYDFLSLL 80 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCchHHHHHHHHHHH
Confidence 5677776 557799999999999999999999999998876554444555432 44445554552 222233333
Q ss_pred HHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868 78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
..+.... .+..+.--+-|+|.+...+ .-.+-+.|...|.+.+..+
T Consensus 81 ~al~~~~--~~~~~~~ii~ilg~~~g~~------~~~~~r~~~~~g~~v~vN~ 125 (185)
T PF09314_consen 81 HALRFIK--QDKIKYDIILILGYGIGPF------FLPFLRKLRKKGGKVVVNM 125 (185)
T ss_pred HHHHHHh--hccccCCEEEEEcCCccHH------HHHHHHhhhhcCCcEEECC
Confidence 3331111 0012233566777652221 2344456667787776553
No 144
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=87.78 E-value=0.26 Score=53.14 Aligned_cols=63 Identities=41% Similarity=0.571 Sum_probs=56.8
Q ss_pred EEecCCcChh------HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006868 97 VFGLGDSGYQ------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (628)
Q Consensus 97 VfGlGds~y~------~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (628)
|||+||+-|- .|++-.+.+..+|.+++|.....++.+++++++++..+...|--.||+++...
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~ 69 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG 69 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence 6899998773 48888899999999999999999999999999999999999999999999654
No 145
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=84.56 E-value=6.5 Score=36.56 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=56.9
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHH------hCCCCcEEeeCCCCCcc-------------------------CCCCC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESE------RRGCPVVVRPVDDYDAR-------------------------CLPEE 54 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~------~~g~~v~~~~l~~~~~~-------------------------~l~~~ 54 (628)
.++|.++-||.- +.+++-.|++... ..|++.+.+|+.+.... .+...
T Consensus 10 ~~kv~~imGSvR--~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~lPL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~a 87 (199)
T KOG4530|consen 10 LIKVAAIMGSVR--KKRFCPGIARAVIELTKESVPGLQIEYVDLSPLPLINTDLEVNPIKSVDEYYPPVTEAWRQKILEA 87 (199)
T ss_pred hHHHHHHhhhhh--hcccCHHHHHHHHHhhhccCCCCceEEEeccCCccccCCcccCccccccccCcHHHHHHHHHHhhc
Confidence 356677777764 4455555544443 23677788887664311 12367
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecC
Q 006868 55 DTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLG 101 (628)
Q Consensus 55 ~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlG 101 (628)
|.++|++|-| ++.-|...+.-++||... ..|+...|+..|
T Consensus 88 D~ivFvtPqY-N~gypA~LKNAlD~lyhe------W~gKPalivSyG 127 (199)
T KOG4530|consen 88 DSIVFVTPQY-NFGYPAPLKNALDWLYHE------WAGKPALIVSYG 127 (199)
T ss_pred ceEEEecccc-cCCCchHHHHHHHHhhhh------hcCCceEEEEec
Confidence 8999999999 888999888888888543 556666665443
No 146
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.04 E-value=27 Score=32.01 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=74.1
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHH-HhCCCCcEEeeCC-CCCccCCC----CCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006868 7 NKLLILYASQTGNALDAAERIGRES-ERRGCPVVVRPVD-DYDARCLP----EEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l-~~~g~~v~~~~l~-~~~~~~l~----~~~~vi~~~sT~g~G~~p~~~~~F~~~L 80 (628)
++-.|+-++.-|-.-.+...+...+ +..|++ ++++- +.+++++. +.+.=+++.|+. .+..-..++.+.+.|
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~e--Vi~LG~~vp~e~i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~~L 78 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFE--VINLGVMTSQEEFIDAAIETDADAILVSSL-YGHGEIDCRGLREKC 78 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCE--EEECCCCCCHHHHHHHHHHcCCCEEEEcCc-cccCHHHHHHHHHHH
Confidence 4445788888888888887666554 577876 44443 23334442 344434444444 456667788888888
Q ss_pred HhccCcccccCCcEEEEEec---CCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006868 81 LQKSLSKQWLEGVRYAVFGL---GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153 (628)
Q Consensus 81 ~~~~~~~~~l~~~~~aVfGl---Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~ 153 (628)
+... +.+.++.+=|. +++.| ....++|+++|...+++.+. ..+++..|+++.+
T Consensus 79 ~~~~-----~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~--------~~~~i~~~l~~~~ 134 (137)
T PRK02261 79 IEAG-----LGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT--------DPEEAIDDLKKDL 134 (137)
T ss_pred HhcC-----CCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC--------CHHHHHHHHHHHh
Confidence 6653 44555555443 22223 45667889999888887432 2345666666544
No 147
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=77.45 E-value=7.1 Score=32.55 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=41.6
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEE--eeCCCCCccCCCCCCeEEEEEecC
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVV--RPVDDYDARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~--~~l~~~~~~~l~~~~~vi~~~sT~ 64 (628)
++++++.++-.|++.-++.+|.+.+.+.++.+.+ .++.++.. .+.++|+++......
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~-~~~~~Dliist~~~~ 59 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPS-LLDDADLIVSTTKVP 59 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhc-ccCCCcEEEEcCCcC
Confidence 3689999999999999999999999988886555 35554443 345677555444443
No 148
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=71.31 E-value=7.9 Score=40.55 Aligned_cols=44 Identities=9% Similarity=0.269 Sum_probs=37.8
Q ss_pred cee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecC
Q 006868 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274 (628)
Q Consensus 230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 274 (628)
.+. +|++.+.+|.+.+..++++|+|+.+ ..+.|+||.++.|.++
T Consensus 24 ~~~~~V~~i~~~~~p~~~~~v~~l~l~~~-~~~~f~aGQy~~l~~~ 68 (307)
T PLN03116 24 PYTATIVSVERIVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPP 68 (307)
T ss_pred CEEEEEEeeEEcccCCCCCceEEEEEecC-CCCceecCceEeeeCC
Confidence 445 8999999987676778999999987 6789999999999876
No 149
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.74 E-value=85 Score=31.07 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=75.4
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC---------cc----CCCCCCeEEEEEecCCCCCCChh
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---------AR----CLPEEDTVIFVVSTTGQGDTPDS 72 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~---------~~----~l~~~~~vi~~~sT~g~G~~p~~ 72 (628)
||++.|+|.-++| +++.+.|. .+|+...++.+.+++ ++ .+++.|++| + | |..||.
T Consensus 1 ~mki~vlt~g~yG--~R~~~nl~----~~~f~~~~v~v~~~Pe~~~~fie~P~~~Lp~~~e~Di~v--a--~--~lHPDl 68 (224)
T COG1810 1 MMKILVLTDGEYG--KRAVNNLA----CKGFKNQFVAVKEYPEELPDFIEEPEDLLPKLPEADIVV--A--Y--GLHPDL 68 (224)
T ss_pred CcEEEEEeeccch--HHHHHhHh----hhccccceEEEEeccccccchhhCHHHhcCCCCCCCEEE--E--e--ccCccH
Confidence 6899999998887 34444444 344554444443331 11 113455433 2 3 556777
Q ss_pred HHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHH
Q 006868 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSL 152 (628)
Q Consensus 73 ~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l 152 (628)
....-+... ..+.+.-|.+.+... +.-++|.+...++|+.-..|--.|+-... + .+|.+++
T Consensus 69 ~~~L~e~~~--------~~~~~alIvp~~~~~-----g~rkqL~~~~~~~g~e~~~p~p~C~Le~~-~-----~p~i~~F 129 (224)
T COG1810 69 LLALPEKAA--------EGGVKALIVPAEPPE-----GLRKQLKEFCEELGVEFEAPEPFCSLEPN-E-----NPHIDEF 129 (224)
T ss_pred HHHHHHHHH--------hCCccEEEEecCCCh-----hHHHHHHHHhhhcceeeecCCccccCCCC-C-----ChHHHHH
Confidence 666555431 457888889876654 56789999999999998888777765432 1 6777777
Q ss_pred HHHH
Q 006868 153 WRRL 156 (628)
Q Consensus 153 ~~~l 156 (628)
++..
T Consensus 130 ~e~F 133 (224)
T COG1810 130 AERF 133 (224)
T ss_pred HHHc
Confidence 6655
No 150
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=67.60 E-value=16 Score=36.29 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=55.3
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC---Cc-------cCCCCCCeEEEEEecCCCCCCChhHHH
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---DA-------RCLPEEDTVIFVVSTTGQGDTPDSMKV 75 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~---~~-------~~l~~~~~vi~~~sT~g~G~~p~~~~~ 75 (628)
||+|+|...+. -++.+.+.|++.|+++..+.+=++ +. ..+..++.+||.|+. .++.
T Consensus 1 ~~~ilitr~~~------~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~--------av~~ 66 (249)
T PRK05928 1 MMKILVTRPSP------KAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKN--------AVEF 66 (249)
T ss_pred CCEEEEeCCHH------HHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHH--------HHHH
Confidence 46666665543 234566777778987655443221 11 234577877776643 3677
Q ss_pred HHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (628)
Q Consensus 76 F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v 127 (628)
|++.+... ....+.+.++.+.| +...+.|++.|.+..
T Consensus 67 ~~~~~~~~--~~~~~~~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 67 LLSALKKK--KLKWPKNKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred HHHHHHhc--CcCCCCCCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 77877621 11236677877777 556667778887543
No 151
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=66.11 E-value=19 Score=35.45 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=44.9
Q ss_pred cEEEEEECCcc----hHHHHHHHHHHHHH-hCCCCcEEee-CCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006868 8 KLLILYASQTG----NALDAAERIGRESE-RRGCPVVVRP-VDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (628)
Q Consensus 8 ~v~I~Y~S~tG----nte~~A~~l~~~l~-~~g~~v~~~~-l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~ 81 (628)
+|+|+++.-.| ......+.|++.|+ ..|++|++.+ .+.++.+.|..+|+||+.... ++--.++..+.|.++++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~-~~~l~~~~~~al~~~v~ 79 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTG-GDELTDEQRAALRDYVE 79 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SS-CCGS-HHHHHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCC-CCcCCHHHHHHHHHHHH
Confidence 58888888433 23467777888887 6787777555 455666778899988777654 22224444555666664
No 152
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=65.87 E-value=52 Score=29.83 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=64.9
Q ss_pred EEEECCcchHHHHHHHH-HHHHHhCCCCcEEeeCCC-CCccCCC----CCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868 11 ILYASQTGNALDAAERI-GRESERRGCPVVVRPVDD-YDARCLP----EEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l-~~~l~~~g~~v~~~~l~~-~~~~~l~----~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
|+-|+..|..-.+...| +..|+..|++ ++++-- .+++++. +.+.=+++.|+. .|..-..++...+.|+...
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~Gfe--VidLG~~v~~e~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~~~g 78 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEAGFN--VVNLGVLSPQEEFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCDEAG 78 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHCCCE--EEECCCCCCHHHHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHHHCC
Confidence 56677777777776554 4455678876 555432 2333332 455556666666 5777788899989887654
Q ss_pred CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee
Q 006868 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~ 132 (628)
+.+.+ |+.-|.-.-+. .-...-.++|+++|..++++.+.
T Consensus 79 -----l~~v~--vivGG~~~i~~--~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 79 -----LKDIL--LYVGGNLVVGK--QDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred -----CCCCe--EEEECCCCCCh--hhhHHHHHHHHHcCCCEEECcCC
Confidence 44433 33334321110 00133456799999999987543
No 153
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=63.11 E-value=32 Score=35.32 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCCCcEEeeCCCCCcc--------CC-CCCCe-EEEEEecCCCCCCChhHHHHHHHHHhccCcccc
Q 006868 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR--------CL-PEEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~~~l~~~~~~--------~l-~~~~~-vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~ 89 (628)
...+|+.|.+.+.+.|+.+...+-.+...+ -+ ++.+. +|.++-.++ .-.+....+|=+.|.+.- .
T Consensus 86 ~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l-~--- 160 (268)
T cd07371 86 DVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKAT-R--- 160 (268)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHH-H---
Confidence 578999999999999998776433332110 01 13343 333332332 233444444444443210 0
Q ss_pred cCCcEEEEEecCCcChh
Q 006868 90 LEGVRYAVFGLGDSGYQ 106 (628)
Q Consensus 90 l~~~~~aVfGlGds~y~ 106 (628)
-.+++++|+|+|+.+..
T Consensus 161 ~~~~rv~iIgSG~lsH~ 177 (268)
T cd07371 161 DAGKRVAVLGSGGLSHS 177 (268)
T ss_pred HcCCcEEEEEecCcccc
Confidence 12588999999998763
No 154
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=62.62 E-value=55 Score=29.90 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=68.1
Q ss_pred EEEEECCcchHHHHHHHH-HHHHHhCCCCcEEeeCC-CCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868 10 LILYASQTGNALDAAERI-GRESERRGCPVVVRPVD-DYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 10 ~I~Y~S~tGnte~~A~~l-~~~l~~~g~~v~~~~l~-~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~ 83 (628)
.|+-|+..|..-.....+ +..|+..|++ ++++- +.+++++ .+++.=+++.|+. .|..-..++.+.+.|+..
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~Gfe--Vi~LG~~v~~e~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l~~~ 79 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAGFN--VVNLGVLSPQEEFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKCDEA 79 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCCCE--EEECCCCCCHHHHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHHHHC
Confidence 466688888887777654 5556678986 44442 2233333 2556666676777 677777888888888775
Q ss_pred cCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee
Q 006868 84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL 132 (628)
Q Consensus 84 ~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~ 132 (628)
. +.++. .++| |.-..+.=. -....++|+++|..++++.+.
T Consensus 80 g-----l~~~~-vivG-G~~vi~~~d--~~~~~~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 80 G-----LEGIL-LYVG-GNLVVGKQD--FPDVEKRFKEMGFDRVFAPGT 119 (134)
T ss_pred C-----CCCCE-EEec-CCcCcChhh--hHHHHHHHHHcCCCEEECcCC
Confidence 4 44544 4455 432222100 123456799999998887543
No 155
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=62.04 E-value=29 Score=35.18 Aligned_cols=84 Identities=13% Similarity=0.031 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCCcEEeeCCCCC-----------ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccccc
Q 006868 22 DAAERIGRESERRGCPVVVRPVDDYD-----------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL 90 (628)
Q Consensus 22 ~~A~~l~~~l~~~g~~v~~~~l~~~~-----------~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l 90 (628)
.-+..+++.|++.|..+..+.+=++. ..++.+++.+||.|.+- .+.|+++|..... .+
T Consensus 13 ~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~na--------V~~~~~~l~~~~~---~~ 81 (255)
T PRK05752 13 EECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPA--------ARLGLELLDRYWP---QP 81 (255)
T ss_pred HHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHH--------HHHHHHHHHhhCC---CC
Confidence 34566777777889876554332211 13466788766666422 5667777754321 13
Q ss_pred CCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868 91 EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 91 ~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
.+.+++.+| +...+.|++.|.+..++
T Consensus 82 ~~~~~~aVG-------------~~Ta~al~~~G~~~~~~ 107 (255)
T PRK05752 82 PQQPWFSVG-------------AATAAILQDYGLDVSYP 107 (255)
T ss_pred cCCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 346777776 55666777888764443
No 156
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=61.80 E-value=32 Score=34.08 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCCcEEeeCCC----CCccCCCCCCeEEEEEecCCCCCCChh-HHHHHHHHHhccCcccccCCcEEEE
Q 006868 23 AAERIGRESERRGCPVVVRPVDD----YDARCLPEEDTVIFVVSTTGQGDTPDS-MKVFWRFLLQKSLSKQWLEGVRYAV 97 (628)
Q Consensus 23 ~A~~l~~~l~~~g~~v~~~~l~~----~~~~~l~~~~~vi~~~sT~g~G~~p~~-~~~F~~~L~~~~~~~~~l~~~~~aV 97 (628)
+-..|+..|++.|+.|++..+++ ++.+.|.++|+||+.+.+. .+..++. .+.|.++.. +|.-+.+
T Consensus 24 ~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~-~~~l~~eq~~~l~~~V~---------~GgGlv~ 93 (215)
T cd03142 24 MHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIA-HDEVKDEIVERVHRRVL---------DGMGLIV 93 (215)
T ss_pred HHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCC-cCcCCHHHHHHHHHHHH---------cCCCEEE
Confidence 34556777777999998777776 3455688999888854443 4566654 455666553 3555555
Q ss_pred EecCC
Q 006868 98 FGLGD 102 (628)
Q Consensus 98 fGlGd 102 (628)
+=.|.
T Consensus 94 lHsg~ 98 (215)
T cd03142 94 LHSGH 98 (215)
T ss_pred ECCCc
Confidence 54444
No 157
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=61.53 E-value=14 Score=31.40 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=32.2
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeC
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPV 43 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l 43 (628)
+|+++=||-.||+.-+|..+.+.+.+.|+++++...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~ 39 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQC 39 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 699999999999999999999999999998776653
No 158
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=60.48 E-value=22 Score=32.69 Aligned_cols=56 Identities=20% Similarity=0.327 Sum_probs=39.2
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhC-CCCcEE--eeCCCCCc--------cCCCCCCeEEEEEe
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERR-GCPVVV--RPVDDYDA--------RCLPEEDTVIFVVS 62 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~-g~~v~~--~~l~~~~~--------~~l~~~~~vi~~~s 62 (628)
++|.|.|+..+-.=.+....+++.|++. |+.|.+ .+..++.. ..+.+.+.||+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 4799999998877778899999999988 988763 22222211 12346677766666
No 159
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=59.93 E-value=26 Score=29.17 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=30.6
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEee
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRP 42 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~ 42 (628)
++|+++.||--|++.-++..|.+.+.+.|+...+..
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~ 36 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTN 36 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEE
Confidence 468999999999999999999999998887655443
No 160
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=59.29 E-value=47 Score=36.79 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=74.6
Q ss_pred cEEEEEECCc-------chHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC---------CCCCeEEEEEecCCCCCCCh
Q 006868 8 KLLILYASQT-------GNALDAAERIGRESERRGCPVVVRPVDDYDARCL---------PEEDTVIFVVSTTGQGDTPD 71 (628)
Q Consensus 8 ~v~I~Y~S~t-------Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l---------~~~~~vi~~~sT~g~G~~p~ 71 (628)
++.++-+|+. ...++.++++.+.|++.|+++...+.-..+.++. .+.+.+|+..+|+|.+ .
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~---~ 78 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA---K 78 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH---H
Confidence 4556666665 3577888888888887766543333222121111 1567899999999653 1
Q ss_pred hHHHHHHHHHhccCcccccCCcEEEEEecCCc--------ChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchh
Q 006868 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS--------GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEG 143 (628)
Q Consensus 72 ~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds--------~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~ 143 (628)
....+ ++. + ++.+.+++..+. .+..+|.+ ..+...|.++|..... ..+...+ +...+
T Consensus 79 ~~~~~---~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~--v~g~~~d-~~~~~ 143 (452)
T cd00578 79 MWIAG---LSE-------L-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKV--VYGHWKD-EDVLR 143 (452)
T ss_pred HHHHH---HHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeE--EECCCCC-HHHHH
Confidence 12222 211 2 478888888764 24456644 6677789999977532 3344332 22677
Q ss_pred hHHHHHHH
Q 006868 144 ALDPWMRS 151 (628)
Q Consensus 144 ~~~~W~~~ 151 (628)
.+..|.+.
T Consensus 144 ~i~~~~ra 151 (452)
T cd00578 144 KIESWARA 151 (452)
T ss_pred HHHHHHHH
Confidence 88888874
No 161
>PF04295 GD_AH_C: D-galactarate dehydratase / Altronate hydrolase, C terminus; InterPro: IPR007392 This domain is found at the C terminus of D-galactarate dehydratase (4.2.1.42 from EC) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, [] and altronate hydrolase (altronic acid hydratase, 4.2.1.7 from EC), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O []. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core []. The N-terminal is represented by IPR007389 from INTERPRO.; GO: 0016836 hydro-lyase activity
Probab=58.93 E-value=87 Score=34.05 Aligned_cols=128 Identities=22% Similarity=0.254 Sum_probs=75.9
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
+..|+|+..+.- +..+|+.|++.+++. . ..++.-+.++.+.-++|.|...++.+...+.|.....
T Consensus 17 RN~v~Iiptv~C--~~~va~~ia~~~~~~------------~-~~~~~vdGvv~l~h~~GC~~~g~d~e~~~rtL~g~a~ 81 (396)
T PF04295_consen 17 RNYVLIIPTVNC--SNTVARRIARRFERE------------R-LAYPNVDGVVALPHPYGCGQLGEDLELTRRTLAGLAR 81 (396)
T ss_pred ccEEEEEecccc--cHHHHHHHHHHHhhh------------h-cccCCCCCeEECCCCCCcCCcchhHHHHHHHHHHHcc
Confidence 345667665544 677888888887754 1 1344567899999999999998888877777765432
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
..+ .-+ +-|+|+|--+- -.+.+.+.+.+.|.+++.-...-+........+...+|++++.+.+
T Consensus 82 hPN-vgg--vlvvgLGCE~~-----~~~~l~~~i~~~g~kpv~~l~iQ~~GGt~~~i~~~~~~~~~l~~~a 144 (396)
T PF04295_consen 82 HPN-VGG--VLVVGLGCENN-----QPERLAEAIAERGPKPVEFLSIQEEGGTEDTIEAGVELARELLEEA 144 (396)
T ss_pred CCC-eee--EEEEecCCccC-----cHHHHHHhhhccCCCceEEEEEeehhhHHHHHHHHHHHHHHHHHHh
Confidence 210 222 56788874322 1466777788888766643222222111112333335555555444
No 162
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=58.18 E-value=13 Score=32.39 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=29.4
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPV 43 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l 43 (628)
|++|+++=|+-.+|+ -+|+.+.+.+++.|+++++...
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~gi~~~i~a~ 37 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQGKDIEVDAI 37 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHCCCceEEEEe
Confidence 457888888877655 9999999999999998766443
No 163
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=57.34 E-value=14 Score=33.86 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=31.3
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC
Q 006868 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~ 46 (628)
-+++|.|.|...+..|+.+.+.+.+.|..+.+..+.++
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~l 61 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEGL 61 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE---E
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeeee
Confidence 68999999999999999999999999988888776653
No 164
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=56.58 E-value=29 Score=28.58 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=34.2
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcE--EeeCCCCCccCCCCCC
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVV--VRPVDDYDARCLPEED 55 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~--~~~l~~~~~~~l~~~~ 55 (628)
+++|+-++-.|++.-++.+|.+.+.+.|+... ..++++. ++.++|
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~~---~~~~~D 47 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGSA---KASSAD 47 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccccc---CCCCCC
Confidence 47899999999999999999999998887533 3444442 245677
No 165
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=55.76 E-value=22 Score=35.80 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=31.3
Q ss_pred eeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006868 234 MIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 234 v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
+..+.++++.....++++|+|+.++....|+||.++.|.+++
T Consensus 3 ~~~~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 3 LQARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eEeeeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 445555555433348999999987557899999999998764
No 166
>PRK06490 glutamine amidotransferase; Provisional
Probab=54.65 E-value=36 Score=34.29 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=45.9
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCC--CCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD--DYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~--~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~ 81 (628)
.|++|+|+=-+..++...+++.+. +.|..+.++... +..++++.+++.+|+..+..+..+..+......+++.
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~----~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~ 80 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQ----ERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWIS 80 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHH----HCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 478899997777777777766654 578888877653 2234467788877776655434444433443334443
No 167
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=54.30 E-value=38 Score=34.41 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhCCCCcEEee---CCCCC---ccCC-CCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCC
Q 006868 20 ALDAAERIGRESERRGCPVVVRP---VDDYD---ARCL-PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEG 92 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~~~---l~~~~---~~~l-~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~ 92 (628)
...+|++|.+.+.+.|+.+...+ +|.-. ..-+ ++.+.=|+-.|.. .+..|....+|=+.|.. +..
T Consensus 79 ~~eLa~~i~~~l~~~gi~~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~-~~~~~~~~~~lG~aL~~-------l~~ 150 (253)
T cd07363 79 SPELAERVAELLKAAGIPARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLP-ASLDPAEHYALGRALAP-------LRD 150 (253)
T ss_pred CHHHHHHHHHHHHhcCCCccccCCcCCcccHHHHHHHHcCCCCCcEEEEEec-CCCCHHHHHHHHHHHHh-------hhh
Confidence 45699999999999999877643 33211 0001 1333323333332 23345555555555543 335
Q ss_pred cEEEEEecCCcChh
Q 006868 93 VRYAVFGLGDSGYQ 106 (628)
Q Consensus 93 ~~~aVfGlGds~y~ 106 (628)
.+++|+|+|+.+..
T Consensus 151 ~~v~ii~SG~lsH~ 164 (253)
T cd07363 151 EGVLIIGSGSSVHN 164 (253)
T ss_pred CCEEEEecCcceec
Confidence 68999999998763
No 168
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=54.03 E-value=76 Score=33.52 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=65.2
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
..++++||=..|.-+-+|+.|.+.+.++|+.+.+++.....-+ ... +++.-....+.++..|+++++..
T Consensus 76 P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~-~n~-------~p~~yh~G~t~D~~~~l~~l~~~--- 144 (345)
T COG0429 76 PLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGE-ANT-------SPRLYHSGETEDIRFFLDWLKAR--- 144 (345)
T ss_pred ceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCC-ccc-------CcceecccchhHHHHHHHHHHHh---
Confidence 3688888888888888999999999999999999887654321 111 11111233448899999999764
Q ss_pred ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeE
Q 006868 87 KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~ 126 (628)
....++..+|. +- .+..+...|.+-|.+.
T Consensus 145 ---~~~r~~~avG~---SL-----GgnmLa~ylgeeg~d~ 173 (345)
T COG0429 145 ---FPPRPLYAVGF---SL-----GGNMLANYLGEEGDDL 173 (345)
T ss_pred ---CCCCceEEEEe---cc-----cHHHHHHHHHhhccCc
Confidence 33456666663 11 1456666666666553
No 169
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.07 E-value=2.1e+02 Score=29.71 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=72.5
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC-CCccCC-------C---CCCeEEEEEe------------
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD-YDARCL-------P---EEDTVIFVVS------------ 62 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~-~~~~~l-------~---~~~~vi~~~s------------ 62 (628)
..++.|+....--.+..+++...+.+++.|++.+...+.+ .+.+++ . +.+.+++-.|
T Consensus 33 ~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld 112 (283)
T PRK14192 33 TPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFD 112 (283)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHh
Confidence 3567888888888888899988888888998888777732 221111 0 1112222111
Q ss_pred ------------cCCCCC--------CChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhc
Q 006868 63 ------------TTGQGD--------TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (628)
Q Consensus 63 ------------T~g~G~--------~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~l 122 (628)
|.-.|. .|-+..-|++.|+.... .++|+++.|+|-| +-+++-+...|.+.
T Consensus 113 ~I~~aKDVdg~n~~n~G~l~~~~~~~~p~T~~gii~~L~~~~i---~l~Gk~vvViG~g-------g~vGkpia~~L~~~ 182 (283)
T PRK14192 113 AISLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMRLLKAYNI---ELAGKHAVVVGRS-------AILGKPMAMMLLNA 182 (283)
T ss_pred ccCHHHhcCCCCccccCccccCCCcccCCcHHHHHHHHHHcCC---CCCCCEEEEECCc-------HHHHHHHHHHHHhC
Confidence 111222 35556788888866432 3899999999976 33688889999999
Q ss_pred CCe
Q 006868 123 GAT 125 (628)
Q Consensus 123 Ga~ 125 (628)
||+
T Consensus 183 gat 185 (283)
T PRK14192 183 NAT 185 (283)
T ss_pred CCE
Confidence 994
No 170
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=51.83 E-value=2.4e+02 Score=27.61 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=85.7
Q ss_pred CCcEEEEEECCcc---hHHHHHHHHHHHHHhCCC--CcEEeeCCCCCc--------------------------------
Q 006868 6 RNKLLILYASQTG---NALDAAERIGRESERRGC--PVVVRPVDDYDA-------------------------------- 48 (628)
Q Consensus 6 ~~~v~I~Y~S~tG---nte~~A~~l~~~l~~~g~--~v~~~~l~~~~~-------------------------------- 48 (628)
|++|+++=+|..| .+.++++.+.+..++..- ++...|+.....
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 6788888888774 467788888888876643 344455433210
Q ss_pred --cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc--------CcccccCCcEEEEEecCCcChhH----HHHHHHH
Q 006868 49 --RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS--------LSKQWLEGVRYAVFGLGDSGYQK----FNFVAKK 114 (628)
Q Consensus 49 --~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~--------~~~~~l~~~~~aVfGlGds~y~~----f~~a~~~ 114 (628)
+++...|.+||+.|=| +-..|...+.+++.+.... -+.+.+.|+++.++..=---|.+ +.-....
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 1233678999999999 9999999999999987542 24456888999988652223433 5667788
Q ss_pred HHHHHHhcCCeEe
Q 006868 115 LDNRLLDLGATAV 127 (628)
Q Consensus 115 l~~~L~~lGa~~v 127 (628)
|...|.=+|.+-+
T Consensus 160 Lr~ilgF~Gitd~ 172 (202)
T COG1182 160 LRTILGFLGITDV 172 (202)
T ss_pred HHHHhhhcCCCcc
Confidence 8888888998754
No 171
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=49.71 E-value=58 Score=32.84 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCCCCcEEeeCCCCC--------ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCc
Q 006868 22 DAAERIGRESERRGCPVVVRPVDDYD--------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGV 93 (628)
Q Consensus 22 ~~A~~l~~~l~~~g~~v~~~~l~~~~--------~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~ 93 (628)
.-|..++..+++.|+.+..+.+=++. ..++..+|.|+|-|. . ..+-|++.+...... .+.+.
T Consensus 11 ~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~-~-------av~~~~~~l~~~~~~--~~~~~ 80 (248)
T COG1587 11 EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSP-N-------AVRFFFEALKEQGLD--ALKNK 80 (248)
T ss_pred hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECH-H-------HHHHHHHHHHhhccc--ccccC
Confidence 55667777788888865544432222 234445565555443 2 267777877665432 46788
Q ss_pred EEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868 94 RYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 94 ~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
++++.| ....+.|+++|.+....
T Consensus 81 ~i~aVG-------------~~Ta~~l~~~G~~~~~~ 103 (248)
T COG1587 81 KIAAVG-------------EKTAEALRKLGIKVDFI 103 (248)
T ss_pred eEEEEc-------------HHHHHHHHHhCCCCCcC
Confidence 888887 67777899999876554
No 172
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=49.46 E-value=24 Score=30.15 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=37.4
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-cCCCCCCeEEEEE
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-RCLPEEDTVIFVV 61 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-~~l~~~~~vi~~~ 61 (628)
++++|+++=|+--+++ -+++.+.+.+.+.|+++++....-... +.+.++| +|+.+
T Consensus 2 ~~~~ILl~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~D-vill~ 57 (95)
T TIGR00853 2 NETNILLLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDAD-VVLLA 57 (95)
T ss_pred CccEEEEECCCchhHH-HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCC-EEEEC
Confidence 3578889988887766 689999999999999876555432211 1234566 44443
No 173
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=49.30 E-value=53 Score=27.98 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=41.3
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCC--cEEeeCCCCCccCCCCCCeEEEEEecC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCP--VVVRPVDDYDARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~--v~~~~l~~~~~~~l~~~~~vi~~~sT~ 64 (628)
|++|+.+=|+-=|++-.++..+.+.|.+.|++ +....++++. .....+| ||++++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~-~~~~~aD--iiv~s~~ 58 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIK-ALTDGAD--IIVTSTK 58 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccc-cCCCccc--EEEEehH
Confidence 57899999999999999999999999999995 4556666654 2223443 4455544
No 174
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=49.24 E-value=71 Score=35.53 Aligned_cols=101 Identities=27% Similarity=0.256 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCCCCcEEe-eCC-CCCccCCC-CCCeEEEEEecCCCC--CCC-------hhHHHHHHHHHhccCc---
Q 006868 22 DAAERIGRESERRGCPVVVR-PVD-DYDARCLP-EEDTVIFVVSTTGQG--DTP-------DSMKVFWRFLLQKSLS--- 86 (628)
Q Consensus 22 ~~A~~l~~~l~~~g~~v~~~-~l~-~~~~~~l~-~~~~vi~~~sT~g~G--~~p-------~~~~~F~~~L~~~~~~--- 86 (628)
.++++-.+.|++.|+++.+. .+. +++.++|. ++|.+++++.++.-- +.| ..+.+|+..+......
T Consensus 174 ~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~ 253 (457)
T COG0493 174 DILDRRLELLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFA 253 (457)
T ss_pred hHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccc
Confidence 56667777888889655432 233 55556653 678999988877211 111 1256677666543222
Q ss_pred ---ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868 87 ---KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 87 ---~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
...-+|+++.|+|.||+.= + .......+||+.+...
T Consensus 254 ~~~~~~~~gk~vvVIGgG~Ta~-------D-~~~t~~r~Ga~~v~~~ 292 (457)
T COG0493 254 EDRTPPAKGKRVVVIGGGDTAM-------D-CAGTALRLGAKSVTCF 292 (457)
T ss_pred cccCCCCCCCeEEEECCCCCHH-------H-HHHHHhhcCCeEEEEe
Confidence 1123569999999998832 2 2245667899877654
No 175
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=48.19 E-value=41 Score=28.24 Aligned_cols=37 Identities=19% Similarity=0.485 Sum_probs=28.6
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecC--CCCccCCCCEEEEecC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVS--AAIEYEVGDVLEILPS 274 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~--~~~~y~~GD~l~i~p~ 274 (628)
+|++.+.+++ ++++++|.+++ ....|+||.++.|.-.
T Consensus 3 ~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 3 KVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 6788888875 68899999883 2478999999999766
No 176
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=47.12 E-value=40 Score=29.90 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=41.3
Q ss_pred CCcEEEEEECCcchHHHH--HHHHHHHHHhCCCCcEE------eeCCCCCccCCCCCCeEEEEEe
Q 006868 6 RNKLLILYASQTGNALDA--AERIGRESERRGCPVVV------RPVDDYDARCLPEEDTVIFVVS 62 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~--A~~l~~~l~~~g~~v~~------~~l~~~~~~~l~~~~~vi~~~s 62 (628)
||+++++=++.+|-+..+ |+.|.+..++.|+.+.+ -..+.++.+++...+++|++..
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d 66 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITD 66 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEec
Confidence 367888899999977665 58899999999987652 2233455566778888887744
No 177
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=46.72 E-value=43 Score=26.59 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=25.9
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCC
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCP 37 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~ 37 (628)
+++++-++-.|++.-++.+|.+.+.+.++.
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKELGIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHCCCe
Confidence 467777888899999999999999988875
No 178
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=45.34 E-value=83 Score=32.32 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCCCcEEeeCCC--CCc------cCC--CCCC-eEEEEEecCCCCCCChhHHHHHHHHHhccCccc
Q 006868 20 ALDAAERIGRESERRGCPVVVRPVDD--YDA------RCL--PEED-TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQ 88 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~~~l~~--~~~------~~l--~~~~-~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~ 88 (628)
...+|+.|.+.+.+.|+++...+-+. +|- .-+ ...+ .+|. .|... ...+.....|=+.|.+.- .
T Consensus 89 ~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~-~s~~~-~~~~~~~~~lG~al~~~l-~-- 163 (271)
T cd07373 89 DTALAEACVTACPEHGVHARGVDYDGFPIDTGTITACTLMGIGTEALPLVV-ASNNL-YHSGEITEKLGAIAADAA-K-- 163 (271)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEE-EEeCC-CCCHHHHHHHHHHHHHHH-H--
Confidence 67899999999999999887554432 221 011 1122 2444 33331 234444445545554310 0
Q ss_pred ccCCcEEEEEecCCcChh
Q 006868 89 WLEGVRYAVFGLGDSGYQ 106 (628)
Q Consensus 89 ~l~~~~~aVfGlGds~y~ 106 (628)
-.+.+++|+|+|+.+..
T Consensus 164 -~~~~rV~iIgSG~lSH~ 180 (271)
T cd07373 164 -DQNKRVAVVGVGGLSGS 180 (271)
T ss_pred -HcCCeEEEEEecccccC
Confidence 13589999999998773
No 179
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=45.11 E-value=3e+02 Score=27.80 Aligned_cols=110 Identities=13% Similarity=0.203 Sum_probs=69.6
Q ss_pred CCcEEEEEECCcchHHHH-HHHHHHHHHhCCCCcEEeeCCCCCccCCC-----CCCeEEEEEecCCCCCC-ChhHHHHHH
Q 006868 6 RNKLLILYASQTGNALDA-AERIGRESERRGCPVVVRPVDDYDARCLP-----EEDTVIFVVSTTGQGDT-PDSMKVFWR 78 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~-A~~l~~~l~~~g~~v~~~~l~~~~~~~l~-----~~~~vi~~~sT~g~G~~-p~~~~~F~~ 78 (628)
|+++.++-+...|..+-. |..++..+.+.|.++-+++.|-... .+. ....+-+. . .++. +......++
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~-~~~~~~~l~~~~~~i~--~--~~~i~~r~fD~Lve 75 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNA-TFEGYKALNVRRLNIM--D--GDEINTRNFDALVE 75 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCc-hhhhHHhcCCcceecc--c--CCccchhhHHHHHH
Confidence 567888888888877766 7778888888999999999875432 121 11122221 1 1222 223333444
Q ss_pred HHHhccCcccccCCcEEEEEecCCcChhHHHHH--HHHHHHHHHhcCCeEeec
Q 006868 79 FLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFV--AKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 79 ~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a--~~~l~~~L~~lGa~~v~~ 129 (628)
.+.. .+.. .|+-.|-+++..+... ...+.+.|+++|-+.+.-
T Consensus 76 ~i~~--------~~~d-vIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh 119 (241)
T PRK13886 76 MIAS--------TEGD-VIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVH 119 (241)
T ss_pred HHhc--------cCCC-EEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEE
Confidence 4321 1222 5788888999877665 567888999999887654
No 180
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.90 E-value=1e+02 Score=32.14 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=33.2
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEee
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRP 42 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~ 42 (628)
.|++|.|++-....++..+++++.+.|.+.|+++.+..
T Consensus 3 ~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~ 40 (295)
T PRK01231 3 SFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDE 40 (295)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 35679999999999999999999999999998876644
No 181
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=43.80 E-value=27 Score=28.90 Aligned_cols=56 Identities=21% Similarity=0.336 Sum_probs=38.4
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC-CCCCeEEEEEecC
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-PEEDTVIFVVSTT 64 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l-~~~~~vi~~~sT~ 64 (628)
+|+++=++--|++.-+|+.|.+.+.+.|+++............. .++| +|+.++..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D-~il~~~~i 57 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDAD-LILLTPQI 57 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-S-EEEEEESS
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCc-EEEEcCcc
Confidence 57788888899999999999999999998877655442222222 2466 44555544
No 182
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=42.16 E-value=17 Score=29.64 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=35.5
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEE
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIF 59 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~ 59 (628)
+++|+-++-.|++.-++.+|.+.+...++ +..++..++...+..++|++|-
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~~~-v~~~~~~~~~~~~~~~~DlIit 52 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEIEI-IDVISLRELEEVDLDDYDLIIS 52 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCceE-EEEEeHHHHhhCcccCCCEEEE
Confidence 58899999999999999999999975544 3444544444333456664443
No 183
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=41.02 E-value=1.7e+02 Score=25.42 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=57.3
Q ss_pred EEEECCcchHHHHHHHH-HHHHHhCCCCcEEeeCCCCCccCCC----CCCe-EEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868 11 ILYASQTGNALDAAERI-GRESERRGCPVVVRPVDDYDARCLP----EEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l-~~~l~~~g~~v~~~~l~~~~~~~l~----~~~~-vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
|+.++.-|..-.+.-.+ +..|+..|++|.... .+.+.+++. +.+. +|.+|+| .+.....+..+.+.+++..
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg-~~~~~~~l~~~~~~~~pdvV~iS~~--~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAGFEVIDLG-VDVPPEEIVEAAKEEDADAIGLSGL--LTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecc--ccccHHHHHHHHHHHHHcC
Confidence 45666667776666554 455567898764433 223433432 3332 4444444 3555677888888886642
Q ss_pred CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
..+..+.+=|.. +.... +.++++|+..+++.
T Consensus 79 -----~~~~~i~vGG~~------~~~~~----~~~~~~G~D~~~~~ 109 (119)
T cd02067 79 -----LDDIPVLVGGAI------VTRDF----KFLKEIGVDAYFGP 109 (119)
T ss_pred -----CCCCeEEEECCC------CChhH----HHHHHcCCeEEECC
Confidence 124454444422 11111 46889999888763
No 184
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=40.65 E-value=43 Score=36.44 Aligned_cols=144 Identities=16% Similarity=0.033 Sum_probs=85.0
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCC-CcEEeeCCCCCccCCCC-CCeEEEEEecCCCCCCChhHHHHHHHHHhccC-
Q 006868 9 LLILYASQTGNALDAAERIGRESERRGC-PVVVRPVDDYDARCLPE-EDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL- 85 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~-~v~~~~l~~~~~~~l~~-~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~- 85 (628)
++|.=+=++|-+-.+|+.|++.+...=+ ....+.-+-.+...+.. +-.+++.+-|.-.|.+.+-.++||+|+.+...
T Consensus 360 slVgepi~yp~in~f~k~lH~k~issflvtnaq~pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 360 SLVGEPIMYPEINPFAKLLHQKLISSFLVTNAQFPEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred eeecccccchhhhHHHHHHHhccchHHhcccccChHHHhchhhhheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 4566677888888888888886642210 00011101111112222 22455566666667888899999999865311
Q ss_pred --cccccCCcEEEEEecCCcChh--HHHHHHHHHHHHHHhcCCeEeecceeeeCCCC-CCchhhHHHHHHHH
Q 006868 86 --SKQWLEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGATAVVERGLGDDQHP-SGYEGALDPWMRSL 152 (628)
Q Consensus 86 --~~~~l~~~~~aVfGlGds~y~--~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~-~g~~~~~~~W~~~l 152 (628)
......-.++.+.|.|++.-. .|+.+++-+-.+++-+|++...+.-.-+--+. -...+++.++..+|
T Consensus 440 lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL 511 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFEL 511 (601)
T ss_pred HHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHH
Confidence 111133468999999888653 79999999999999999987654322221111 11345555555555
No 185
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=40.18 E-value=66 Score=27.73 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=26.8
Q ss_pred CcEEEEEECCcchHHH--HHHHHHHHHHhCCCCcEEeeCCC
Q 006868 7 NKLLILYASQTGNALD--AAERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~--~A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
|.|.|+++|.|||.+- =-+++...|...+++-+.+|+..
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~ 41 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM 41 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC
Confidence 5688999999999764 44678888888888888888764
No 186
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=40.00 E-value=1e+02 Score=30.46 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=23.7
Q ss_pred ccccHHHHHHh-ccccCcCCCCHHHHHHHHh
Q 006868 316 VPIKLRTFVEL-TMDVTSASPRRYFFEVMSY 345 (628)
Q Consensus 316 ~~~tl~~~l~~-~~Dl~~~~p~~~~l~~la~ 345 (628)
.+++=.++|++ ||||++.+|+..-++.+..
T Consensus 20 ~~add~~~lRRv~LDL~G~~PT~eEv~~Fl~ 50 (208)
T PF07583_consen 20 PPADDATFLRRVYLDLTGLPPTPEEVRAFLA 50 (208)
T ss_pred CCCCHHHHHHHHHHHHhCCCcCHHHHHHHHh
Confidence 56777889987 8999998898876665544
No 187
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=39.83 E-value=1.7e+02 Score=31.72 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=19.6
Q ss_pred CCccCCCcEEEEEECCcchHHHHHHHHHHHH
Q 006868 1 MREEKRNKLLILYASQTGNALDAAERIGRES 31 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~tGnte~~A~~l~~~l 31 (628)
|..-+..++.|+.++. .+.+|+++++.|
T Consensus 1 ~~~~~~~~~~i~~~~~---~~~la~~ia~~l 28 (382)
T PRK06827 1 METLPVGSLGIIALPS---CRELADKVDEHL 28 (382)
T ss_pred CCCCCCCceEEEECCC---CHHHHHHHHHHH
Confidence 6666666777776644 377888888888
No 188
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=39.15 E-value=28 Score=32.81 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=33.0
Q ss_pred cCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 90 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 90 l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
+...+++|+-.||+....++..+..+...|+++|++...
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~ 40 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLAD 40 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEE
Confidence 456899999999988777788889999999999998554
No 189
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=38.77 E-value=1.2e+02 Score=30.90 Aligned_cols=82 Identities=17% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCCcEEeeCCCCC----------ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccccc
Q 006868 21 LDAAERIGRESERRGCPVVVRPVDDYD----------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL 90 (628)
Q Consensus 21 e~~A~~l~~~l~~~g~~v~~~~l~~~~----------~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l 90 (628)
+.-++.+++.|++.|.++..+.+=++. ...|.+++.+||.|++- .+.|+.++ .. ..+
T Consensus 27 ~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA--------V~~~~~~~-~~----~~~ 93 (266)
T PRK08811 27 SGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA--------VRAAHRLL-PL----QRP 93 (266)
T ss_pred HHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH--------HHHHHHHh-cc----cCc
Confidence 445677888888899876554441111 13455788766666422 45555433 21 125
Q ss_pred CCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 91 EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 91 ~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
.+.+++.+| +...+.|++.|.....
T Consensus 94 ~~~~~~AVG-------------~~TA~aL~~~G~~~~~ 118 (266)
T PRK08811 94 ARAHWLSVG-------------EGTARALQACGIDEVV 118 (266)
T ss_pred cCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 677877777 5566677788876543
No 190
>KOG4723 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.70 E-value=1.6e+02 Score=28.90 Aligned_cols=116 Identities=8% Similarity=0.032 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeC
Q 006868 503 AAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAG 581 (628)
Q Consensus 503 ~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG 581 (628)
.++.+|+.+||... .|++..-+..+.+. . -+ ..++||++.=++..-+-..+.-+ +.---.+|..+|+=|
T Consensus 18 qgkltLl~d~~eT~gsFl~H~~l~~~Lka-n-~~-----~cFlaf~k~fshy~i~~rKlG~~---l~t~k~rgqlvF~dg 87 (248)
T KOG4723|consen 18 QGKLTLLLDTRETPGSFLFHYYLYHALKA-N-ES-----TCFLAFSKTFSHYAISMRKLGMD---LKTKKNRGQLVFIDG 87 (248)
T ss_pred CccEEEEeecccCCceeeHHHHHHHHHhc-C-Cc-----EEEEEeecchhHHHHHHHHhCCc---eeecccCCcEEEEhh
Confidence 39999999999777 99999999888876 3 22 68999998643211111111111 100002256777766
Q ss_pred CCCCCHHHHHHHH------HHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 006868 582 SATKMPSDVWSTF------EEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628 (628)
Q Consensus 582 ~~~~M~~~v~~~L------~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvws 628 (628)
=...+...+.++= ..-+...++-.-.-.++...+.++.=+..+|+|+
T Consensus 88 l~~~~~~i~~q~~kq~~~t~~~~~a~~~~ni~~v~e~~rE~~~~v~~~e~i~~ 140 (248)
T KOG4723|consen 88 LSMLFAPISKQSKKQAPETKNHIKAVFAPNIQCVEENDREFENSVIIIEDIDI 140 (248)
T ss_pred hhhhhCccchhhhhcCchhHHHHHhhcCcchhHHHHHHHHHhhheeeeeeeec
Confidence 5311111111111 1112222232333456778888888899999995
No 191
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=38.37 E-value=2.8e+02 Score=30.37 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=67.6
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
....|+|+=|-..|+-+...+.+...+++.|+.+.+++--...-.+|-.-. +| ....+.+.+.+++.++...
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr--~f------~ag~t~Dl~~~v~~i~~~~ 195 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPR--LF------TAGWTEDLREVVNHIKKRY 195 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCc--ee------ecCCHHHHHHHHHHHHHhC
Confidence 346678888989999999999999999999999999886554333333221 22 3445678889998887653
Q ss_pred CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeE
Q 006868 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~ 126 (628)
...+.-.+|.+ ++ |-.+-+.|.+-|.+.
T Consensus 196 ------P~a~l~avG~S---~G-----g~iL~nYLGE~g~~~ 223 (409)
T KOG1838|consen 196 ------PQAPLFAVGFS---MG-----GNILTNYLGEEGDNT 223 (409)
T ss_pred ------CCCceEEEEec---ch-----HHHHHHHhhhccCCC
Confidence 23344444431 21 667777787777654
No 192
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=36.84 E-value=2e+02 Score=29.54 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhCCCCcEEee---CCC---CCccCC---CCCCeEEEEEecCCCCCCChhHHHHH---HHHHhccCcc
Q 006868 20 ALDAAERIGRESERRGCPVVVRP---VDD---YDARCL---PEEDTVIFVVSTTGQGDTPDSMKVFW---RFLLQKSLSK 87 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~~~---l~~---~~~~~l---~~~~~vi~~~sT~g~G~~p~~~~~F~---~~L~~~~~~~ 87 (628)
-..+|+.|.+.+.+.|+.+.... +|. +...-+ .+...|-+...+. ..+.+..++.+ +.|...- ..
T Consensus 89 d~~LA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~--~~p~~~~~~~~~lG~al~~~i-~~ 165 (268)
T cd07367 89 HREFARAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNIN--TDPAPSPRRCWALGKVLAQYV-EK 165 (268)
T ss_pred CHHHHHHHHHHHHHcCCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEeccc--CCCCCCHHHHHHHHHHHHHHH-Hh
Confidence 56799999999999999765432 222 111111 1222333333333 12222333433 3343321 00
Q ss_pred cccCCcEEEEEecCCcChh
Q 006868 88 QWLEGVRYAVFGLGDSGYQ 106 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds~y~ 106 (628)
..-.+++++|+|+|+.+..
T Consensus 166 ~~~~d~rV~iiaSGgLSH~ 184 (268)
T cd07367 166 RRPAGERVAVIAAGGLSHW 184 (268)
T ss_pred cCCCCCcEEEEEcccccCC
Confidence 0015789999999998875
No 193
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=36.78 E-value=92 Score=36.41 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=51.9
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-----------cCCCCCCeEEEEEecCCCCCCChhHH
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-----------RCLPEEDTVIFVVSTTGQGDTPDSMK 74 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-----------~~l~~~~~vi~~~sT~g~G~~p~~~~ 74 (628)
+|+|+|.-.. .-+..+++.|++.|..+..+.+=++.+ .++..++.|||.|+.- .+
T Consensus 3 ~~~VLVTRp~------~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nA--------V~ 68 (656)
T PRK06975 3 AFTVVVTRPD------GQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNA--------VD 68 (656)
T ss_pred CCEEEEeCcH------hHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHH--------HH
Confidence 4566555432 334556667777898766544322211 3566888777776532 56
Q ss_pred HHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCe
Q 006868 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125 (628)
Q Consensus 75 ~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~ 125 (628)
.|++.+.... +.+.+++++| ....+.|.+.|..
T Consensus 69 ~~~~~l~~~~-----~~~~~i~AVG-------------~~Ta~aL~~~Gi~ 101 (656)
T PRK06975 69 RALARLDAIW-----PHALPVAVVG-------------PGSVAALARHGIA 101 (656)
T ss_pred HHHHHHHhhC-----ccCCeEEEEC-------------HHHHHHHHHcCCC
Confidence 6777775431 3467777777 4444566778875
No 194
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=35.91 E-value=49 Score=35.13 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=42.2
Q ss_pred CCcEEEEEECCcch-HHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCC
Q 006868 6 RNKLLILYASQTGN-ALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE 54 (628)
Q Consensus 6 ~~~v~I~Y~S~tGn-te~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~ 54 (628)
.+++.|+-||.+|. ...++++|.+.+++.|.+..++.++..++..|.+.
T Consensus 232 A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf 281 (332)
T TIGR00322 232 GKKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMF 281 (332)
T ss_pred CCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC
Confidence 46799999999985 56799999999999999999999999887766544
No 195
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=35.41 E-value=85 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=21.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCEEE
Q 006868 598 VSKEGEASRDSAANWLKALQRAGRYHV 624 (628)
Q Consensus 598 l~~~~~~~~~~a~~~l~~l~~~~Ry~~ 624 (628)
+++..+++..+|..||..|.++|+...
T Consensus 21 iA~~~gls~~~aR~yL~~Le~eG~V~~ 47 (62)
T PF04703_consen 21 IADALGLSIYQARYYLEKLEKEGKVER 47 (62)
T ss_dssp HHHHHTS-HHHHHHHHHHHHHCTSEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 345568999999999999999998764
No 196
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=35.35 E-value=2.5e+02 Score=30.75 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=56.4
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC-------CCCCCeEEEEEecCCCCCCChhHHHHHHH
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRF 79 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~-------l~~~~~vi~~~sT~g~G~~p~~~~~F~~~ 79 (628)
.-+.|.|||.++.++..++.+ ++.|+++.++++..+.+-+ +.+.+.|+++=-++-.|..-.-..++...
T Consensus 269 d~~iV~~Gs~~~~a~ea~~~L----~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~a 344 (407)
T PRK09622 269 EVAIVALGTTYESAIVAAKEM----RKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSA 344 (407)
T ss_pred CEEEEEEChhHHHHHHHHHHH----HhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHH
Confidence 457888999888888777765 4468888888776643211 23567777776665555555566666666
Q ss_pred HHhccCcccccCCcEE---EEEecCCcChh
Q 006868 80 LLQKSLSKQWLEGVRY---AVFGLGDSGYQ 106 (628)
Q Consensus 80 L~~~~~~~~~l~~~~~---aVfGlGds~y~ 106 (628)
|..... +.... .++|+|...+.
T Consensus 345 l~~~~~-----~~~~~v~~~~~g~gG~~~t 369 (407)
T PRK09622 345 VYQTQG-----TKHPVVSNYIYGLGGRDMT 369 (407)
T ss_pred HhccCc-----CCCceEeeeEECCCCCCCC
Confidence 643210 01223 57788776663
No 197
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.86 E-value=5.6e+02 Score=26.86 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=76.5
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-CccCC----------CCCCeEEEEEecC----------
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----------PEEDTVIFVVSTT---------- 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~~~l----------~~~~~vi~~~sT~---------- 64 (628)
..++.|+....--.+..+++...+.+++.|+..+++.+.+. +.+++ .+-+.+++--|--
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~ 112 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQ 112 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 45788888888889999999999999999999999888542 21111 1223455544422
Q ss_pred ---------------------C-CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhc
Q 006868 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (628)
Q Consensus 65 ---------------------g-~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~l 122 (628)
| .+-.|-+...-++.|+.... .+.|++++|+|.|. .+++-+...|.+.
T Consensus 113 ~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~V~vIG~s~-------ivG~PmA~~L~~~ 182 (301)
T PRK14194 113 AINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCG---DLTGKHAVVIGRSN-------IVGKPMAALLLQA 182 (301)
T ss_pred ccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCC---CCCCCEEEEECCCC-------ccHHHHHHHHHHC
Confidence 1 11235555555666655432 38999999999873 3578888889888
Q ss_pred CCeEe
Q 006868 123 GATAV 127 (628)
Q Consensus 123 Ga~~v 127 (628)
|++..
T Consensus 183 gatVt 187 (301)
T PRK14194 183 HCSVT 187 (301)
T ss_pred CCEEE
Confidence 98753
No 198
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=34.86 E-value=53 Score=27.95 Aligned_cols=84 Identities=17% Similarity=0.326 Sum_probs=49.4
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCC--CCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD--DYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~--~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
+|+++=|+--+++ -+|+.+.+.+.+.|+++++...+ ++. ....++| +|+.+|-. +..++.++....
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~~~~~~-~~~~~~D-iil~~Pqv---------~~~~~~i~~~~~ 68 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVPESELE-EYIDDAD-VVLLGPQV---------RYMLDEVKKKAA 68 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEecHHHHH-HhcCCCC-EEEEChhH---------HHHHHHHHHHhc
Confidence 4677778877777 68999999999999976554443 322 1234566 55555543 333444443210
Q ss_pred cccccCCcEEEEEecCCcChhHHH
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFN 109 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~ 109 (628)
..+.++.++. ...|.+.+
T Consensus 69 ----~~~~pv~~I~--~~~Y~~~d 86 (96)
T cd05564 69 ----EYGIPVAVID--MMDYGMMN 86 (96)
T ss_pred ----cCCCcEEEcC--hHhcccCC
Confidence 2356666664 34565433
No 199
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.42 E-value=1.1e+02 Score=28.38 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=58.4
Q ss_pred CcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC-----CCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccccc
Q 006868 16 QTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL 90 (628)
Q Consensus 16 ~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l-----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l 90 (628)
+-|.... |+-+++.|+..|++|...-+-... +++ .+.-.+|.+||++ |..-..+....+.|.....
T Consensus 22 lDgHd~g-akvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~--g~h~~l~~~lve~lre~G~----- 92 (143)
T COG2185 22 LDGHDRG-AKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLD--GGHLTLVPGLVEALREAGV----- 92 (143)
T ss_pred ccccccc-hHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEecc--chHHHHHHHHHHHHHHhCC-----
Confidence 4444332 566777888899886655544432 222 2444577777776 5566677778888876642
Q ss_pred CCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868 91 EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 91 ~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
.... |++-|.-.-+. ...|+++|..+++.+
T Consensus 93 ~~i~--v~~GGvip~~d--------~~~l~~~G~~~if~p 122 (143)
T COG2185 93 EDIL--VVVGGVIPPGD--------YQELKEMGVDRIFGP 122 (143)
T ss_pred cceE--EeecCccCchh--------HHHHHHhCcceeeCC
Confidence 2222 45546544433 346889999998875
No 200
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=34.29 E-value=1.4e+02 Score=29.01 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCCCcEEeeCCCCC----------ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCc
Q 006868 24 AERIGRESERRGCPVVVRPVDDYD----------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGV 93 (628)
Q Consensus 24 A~~l~~~l~~~g~~v~~~~l~~~~----------~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~ 93 (628)
+..+.+.|++.|+.+..+.+-+.. ...+..++.|||.|+. .++.|++.+.... ...+.+.
T Consensus 10 ~~~l~~~L~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~--------av~~~~~~~~~~~--~~~~~~~ 79 (239)
T cd06578 10 ADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPN--------AVEAFFEALEELG--LRALAGL 79 (239)
T ss_pred hHHHHHHHHHcCCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHH--------HHHHHHHHHHhhC--CccccCC
Confidence 677888888899887654432221 1233456777776653 3677777775432 1236678
Q ss_pred EEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006868 94 RYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 94 ~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
++.+.| +...+.|++.|......
T Consensus 80 ~~~avG-------------~~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 80 KIAAVG-------------PKTAEALREAGLTADFV 102 (239)
T ss_pred EEEEEC-------------HHHHHHHHHcCCCceeC
Confidence 887776 67777888999877653
No 201
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=33.48 E-value=2.1e+02 Score=29.76 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc--------CC-CCCCe-EEEEEec----CCC-CCCChhHHHHHHHHHhc
Q 006868 19 NALDAAERIGRESERRGCPVVVRPVDDYDAR--------CL-PEEDT-VIFVVST----TGQ-GDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 19 nte~~A~~l~~~l~~~g~~v~~~~l~~~~~~--------~l-~~~~~-vi~~~sT----~g~-G~~p~~~~~F~~~L~~~ 83 (628)
+...+|+.|++.+.+.|+.+...+..+...+ -+ ++.+. +|-++.. +-+ ..++.....|=+.|.+.
T Consensus 96 gd~eLA~~i~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~~a 175 (294)
T cd07372 96 VDVELAEACCEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEGLGEMDVLGKATREA 175 (294)
T ss_pred CCHHHHHHHHHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCCHHHHHHHHHHHHHH
Confidence 4678999999999999998765333322110 01 12222 3333321 101 12234444444444331
Q ss_pred cCcccccCCcEEEEEecCCcChh
Q 006868 84 SLSKQWLEGVRYAVFGLGDSGYQ 106 (628)
Q Consensus 84 ~~~~~~l~~~~~aVfGlGds~y~ 106 (628)
- . -.+++++|+|+||-+..
T Consensus 176 l-~---~~~~RV~vIaSG~LSH~ 194 (294)
T cd07372 176 I-R---KTGRRAVLLASNTLSHW 194 (294)
T ss_pred H-H---hcCCeEEEEEeCccccc
Confidence 1 1 23689999999997764
No 202
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.16 E-value=2.3e+02 Score=24.97 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=57.4
Q ss_pred EEEECCcchHHHHHHHHHHH-HHhCCCCcEEeeCCCCCccCCC----CCC-eEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868 11 ILYASQTGNALDAAERIGRE-SERRGCPVVVRPVDDYDARCLP----EED-TVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l~~~-l~~~g~~v~~~~l~~~~~~~l~----~~~-~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
|+-++.-|---.+...+... ++..|++|...-.+ .+.+++. +.+ -+|++|++. +...+.+..+.+.|++..
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELLRELG 78 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHHHhcC
Confidence 34455555555555555444 45778765444333 3333332 222 355555554 567777888888887653
Q ss_pred CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecce
Q 006868 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~ 131 (628)
+.+..+.+=| . . .+...++|+++|...++..+
T Consensus 79 -----~~~i~i~~GG--~-~-------~~~~~~~~~~~G~d~~~~~~ 110 (122)
T cd02071 79 -----AGDILVVGGG--I-I-------PPEDYELLKEMGVAEIFGPG 110 (122)
T ss_pred -----CCCCEEEEEC--C-C-------CHHHHHHHHHCCCCEEECCC
Confidence 2334433333 2 1 24445778899988877644
No 203
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=33.11 E-value=3e+02 Score=30.29 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=61.0
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC-----CCCCeEEEEEecC-CCCCCChhHHHHHHHHHh
Q 006868 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-----PEEDTVIFVVSTT-GQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l-----~~~~~vi~~~sT~-g~G~~p~~~~~F~~~L~~ 82 (628)
++|+|.+..-... =..+.+.|+++|++++....++-+. .| ..||.+|++.++. +-|.- =+.+.+++++.+
T Consensus 1 ~LVllD~~~~~~~--yS~Ff~~L~~rg~~l~~~~~~d~~l-~L~~~ge~~YD~LIif~~~~k~~g~~-ls~~~ll~Fvd~ 76 (423)
T PF03345_consen 1 TLVLLDNRAIKET--YSTFFNSLKERGYELTFKSADDESL-SLFKYGERLYDHLIIFPPSVKEFGGS-LSPKTLLDFVDN 76 (423)
T ss_pred CEEEecCccchhh--HHHHHHHHHhCCCEEEEecCCCCCc-chhhCChhhcceEEEeCCcccccCCC-CCHHHHHHHHhC
Confidence 3677777753332 4567788999999999988887332 22 2578888887655 22321 224444554422
Q ss_pred ccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeE
Q 006868 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~ 126 (628)
|-.+-|.+..+ ..++.+...+.++|...
T Consensus 77 ---------GgNilv~~s~~-------~~~~~ir~~~~E~gi~~ 104 (423)
T PF03345_consen 77 ---------GGNILVAGSSD-------AIPDSIREFANELGIEF 104 (423)
T ss_pred ---------CCcEEEEeCCC-------cCcHHHHHHHHHCCeEE
Confidence 44555665433 14688888899999764
No 204
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=32.82 E-value=70 Score=34.16 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=28.7
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCC
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCP 37 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~ 37 (628)
++|+|+|+++|..|---..|+.|++.|++.|..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~ 35 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIK 35 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCC
Confidence 467899999998778889999999999988765
No 205
>PRK05907 hypothetical protein; Provisional
Probab=32.78 E-value=5.1e+02 Score=27.20 Aligned_cols=124 Identities=10% Similarity=-0.003 Sum_probs=65.1
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC---------CCCCeEEEEEecCCCCCCC-hhHHHH
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL---------PEEDTVIFVVSTTGQGDTP-DSMKVF 76 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l---------~~~~~vi~~~sT~g~G~~p-~~~~~F 76 (628)
..++++||++. +...+.|.+.+-..+. ..++.++++.+++ ....-+|++- .. +.+. .+...+
T Consensus 18 ~~~y~~~g~~~---~~~~~~l~~~~~~~~~--~~fdg~~~~~~~ii~~aetlPfFaerRlV~v~-~~--~~~~~~~~~~L 89 (311)
T PRK05907 18 RPAVIVIGSSS---EEDKDIFIELLVSGRK--SEFDGQGLLQQELLSWTEHFGLFASQETIGIY-QA--EKMSSSTQEFL 89 (311)
T ss_pred CceEEEecCCc---HHHHHHHHHHhCCCcc--ceecCCCCCHHHHHHHHhcCCcccCeEEEEEe-cc--cccccccHHHH
Confidence 38999999999 7777777776632222 3467776653332 2333344441 11 1222 345667
Q ss_pred HHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006868 77 WRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
.+++.+. .....+-||.. .+.++...-|.+. + |+. +-..+++... .+.++.+|..+.++..
T Consensus 90 ~~Yl~np------~~~~~liv~~~---~~d~~kkl~K~i~----k-~~~-v~~~~e~~~l----~e~~L~~Wi~~~~~~~ 150 (311)
T PRK05907 90 IRYARNP------NPHLTLFLFTT---KQECFSSLSKKLS----S-ALC-LSLFGEWFAD----RDKRIAQLLIQRAKEL 150 (311)
T ss_pred HHHHhCC------CCCeEEEEEEe---cccHHHHHHHHHh----h-cce-eccccccCCC----CHHHHHHHHHHHHHHc
Confidence 7776542 22234444654 2556554444443 2 221 2000122111 4678999998877655
Q ss_pred H
Q 006868 157 H 157 (628)
Q Consensus 157 ~ 157 (628)
.
T Consensus 151 g 151 (311)
T PRK05907 151 G 151 (311)
T ss_pred C
Confidence 3
No 206
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=32.67 E-value=86 Score=32.37 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=36.7
Q ss_pred CcEEEEEECCcc---hHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC--CCCCeEEEEE
Q 006868 7 NKLLILYASQTG---NALDAAERIGRESERRGCPVVVRPVDDYDARCL--PEEDTVIFVV 61 (628)
Q Consensus 7 ~~v~I~Y~S~tG---nte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l--~~~~~vi~~~ 61 (628)
++|.|++|+.+= ..-.-++.+.+.|++.|+++.+++.++.....+ .+.|.++..+
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~ 64 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNAL 64 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEec
Confidence 478999876542 222356899999999999999988775433322 2456565553
No 207
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=32.64 E-value=72 Score=28.22 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=55.0
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC--
Q 006868 474 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP-- 551 (628)
Q Consensus 474 piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~-- 551 (628)
.++|+|=-|++-.+.++|++.-.. .+...|+-..+.+|..+ |.. . ..+ ++.... |+..
T Consensus 3 ~~ll~gDeTalPAi~~iLe~lp~~------~~~~v~iev~~~~d~~~---l~~---~-~~~------~v~wv~-r~~~~~ 62 (119)
T PF04954_consen 3 RYLLVGDETALPAIARILEALPAD------APGTVFIEVPDEADRQP---LPA---P-AGV------EVTWVP-RDGPAA 62 (119)
T ss_dssp EEEEEEEGGGHHHHHHHHHHS-TT-------EEEEEEEESSGGG--------------TEE------EEEEEE--SS--T
T ss_pred eEEEEeccccHHHHHHHHHhCCCC------CeEEEEEEECChHhccc---CCC---C-CCC------EEEEEe-CCCCCc
Confidence 478999999999999999988432 56778888877776432 222 2 333 444444 4332
Q ss_pred CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 552 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 552 ~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
...-+.+.+..... -..+.+++++|-. .+.+.+++.|++
T Consensus 63 ~~~~l~~al~~~~~-----~~~~~~vW~AgE~-~~~r~lR~~l~~ 101 (119)
T PF04954_consen 63 QGSALADALRDLPL-----PAGDGYVWVAGEA-SAVRALRRHLRE 101 (119)
T ss_dssp T-HHHHHHHTTS--------SS-EEEEEEEEH-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhc-----cCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 22223333333211 1348899999997 777777776664
No 208
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=32.59 E-value=94 Score=29.52 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=26.8
Q ss_pred ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 87 KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
...+.|++++|+|+| ..++.+.++|+.+|++.++
T Consensus 31 ~~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 31 GRELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp BS-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEEE
T ss_pred ccccCCCEEEEEEEc--------CCcCeEeeeeecCCceeEE
Confidence 345889999999987 4589999999999997653
No 209
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=32.37 E-value=93 Score=32.27 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=43.3
Q ss_pred CCcEEEEEECCcc---hHHHHHHHHHHHHHhCCCCcEEeeCCCCC-ccCCC--CCCeEEEEEecCCCCCCChhHHHHHHH
Q 006868 6 RNKLLILYASQTG---NALDAAERIGRESERRGCPVVVRPVDDYD-ARCLP--EEDTVIFVVSTTGQGDTPDSMKVFWRF 79 (628)
Q Consensus 6 ~~~v~I~Y~S~tG---nte~~A~~l~~~l~~~g~~v~~~~l~~~~-~~~l~--~~~~vi~~~sT~g~G~~p~~~~~F~~~ 79 (628)
|++|.|++|..+. -+.+-|+.+.+.|.+.|+++..++.+... ...+. +.|.++.+. +|..........+++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~l--hG~~ge~~~i~~~le~ 80 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVAL--HGEDGENGRVSALLEM 80 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeC--CCCCCCChHHHHHHHH
Confidence 7789999995443 34477888999999999998888765321 22233 344443333 4433333345555443
No 210
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.36 E-value=3.3e+02 Score=23.70 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=38.0
Q ss_pred EEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC---ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~---~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
.+||+ |.+..+|+.++..+...|..+....-.+.- ...+.+.+.+| +.|-. |.. ++..+..+.+++
T Consensus 4 ~i~G~--G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi-~iS~s--G~t-~~~~~~~~~a~~ 72 (128)
T cd05014 4 VVTGV--GKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVI-AISNS--GET-DELLNLLPHLKR 72 (128)
T ss_pred EEEeC--cHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEE-EEeCC--CCC-HHHHHHHHHHHH
Confidence 45554 678899999999998888877665432211 12333445444 44434 333 344444555543
No 211
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.23 E-value=1e+02 Score=32.34 Aligned_cols=38 Identities=34% Similarity=0.663 Sum_probs=32.6
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEee
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRP 42 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~ 42 (628)
.+++++|+|-...+.+.+.++.+.+.|++.|+.+.+..
T Consensus 2 ~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~ 39 (305)
T PRK02645 2 QLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGP 39 (305)
T ss_pred CcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 47889999999888888999999999999998876644
No 212
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=32.01 E-value=75 Score=33.30 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=37.1
Q ss_pred CCCcEEEEEECCcchH-HHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCC
Q 006868 5 KRNKLLILYASQTGNA-LDAAERIGRESERRGCPVVVRPVDDYDARCLPEED 55 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnt-e~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~ 55 (628)
..+++.|+.||.+|.. ..++++|.+.++++|.++.++.+++.++..|.+..
T Consensus 208 ~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~ 259 (307)
T PF01866_consen 208 DAKTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFP 259 (307)
T ss_dssp T--EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS-
T ss_pred cCCEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCc
Confidence 3578999999988854 56789999999999999999999999887776553
No 213
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.96 E-value=1.4e+02 Score=26.34 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=57.1
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC---------ccCC-CCCCeEEEEEecCCCCCCChhHHHHH
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---------ARCL-PEEDTVIFVVSTTGQGDTPDSMKVFW 77 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~---------~~~l-~~~~~vi~~~sT~g~G~~p~~~~~F~ 77 (628)
+|.|+=+|. +..++++++.+.|.+.|+++..++...-. ..+. ..-|+++++++ |+.....+
T Consensus 2 siAVvGaS~--~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~-------~~~~~~~v 72 (116)
T PF13380_consen 2 SIAVVGASD--NPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP-------PDKVPEIV 72 (116)
T ss_dssp EEEEET--S--STTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S--------HHHHHHHH
T ss_pred EEEEEcccC--CCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC-------HHHHHHHH
Confidence 344444454 56678999999999999887777765421 2222 24466666543 45667777
Q ss_pred HHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecce
Q 006868 78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (628)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~ 131 (628)
+.+... |.+..+|=.| .....+.+.+++.|.+.+.|..
T Consensus 73 ~~~~~~--------g~~~v~~~~g--------~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 73 DEAAAL--------GVKAVWLQPG--------AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HHHHHH--------T-SEEEE-TT--------S--HHHHHHHHHTT-EEEESS-
T ss_pred HHHHHc--------CCCEEEEEcc--------hHHHHHHHHHHHcCCEEEeCCc
Confidence 776543 5667777666 2246677777888888776643
No 214
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=31.90 E-value=4.4e+02 Score=24.77 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=39.9
Q ss_pred EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 10 ~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
..+||. |.+..+|+.++..+...|..+.... +.....+.+.|.+|+ .|..|. ..+.....+..++
T Consensus 36 I~i~G~--G~S~~~A~~~~~~l~~~g~~~~~~~--~~~~~~~~~~D~vI~-iS~sG~---t~~~i~~~~~ak~ 100 (179)
T cd05005 36 IFVYGA--GRSGLVAKAFAMRLMHLGLNVYVVG--ETTTPAIGPGDLLIA-ISGSGE---TSSVVNAAEKAKK 100 (179)
T ss_pred EEEEec--ChhHHHHHHHHHHHHhCCCeEEEeC--CCCCCCCCCCCEEEE-EcCCCC---cHHHHHHHHHHHH
Confidence 566774 7788999999999988888766653 322234445555544 444433 2444555555544
No 215
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=31.85 E-value=60 Score=36.30 Aligned_cols=84 Identities=10% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhCCCCcEEee---CCCC-----CccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCC
Q 006868 21 LDAAERIGRESERRGCPVVVRP---VDDY-----DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEG 92 (628)
Q Consensus 21 e~~A~~l~~~l~~~g~~v~~~~---l~~~-----~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~ 92 (628)
..-|..+++.|++.|-.+..+. +... ...++.+|+-+||-++ . ..+.|+++|.....+-..|.
T Consensus 260 ~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~~~~l~~l~~ydwlvFTS~-n-------gV~~Ff~~l~~~~~D~R~l~- 330 (474)
T PRK07168 260 TNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLTLEQINEIFNVNRLVFCSA-E-------SVEILMQSCSKYKKDIRSLQ- 330 (474)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccEEeeCCCCcHHHHHHhccCCEEEEcCH-H-------HHHHHHHHHHHcCCChHHhC-
Confidence 4456677888888886543221 1111 1223567875555443 2 37889999987655444465
Q ss_pred cEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeE
Q 006868 93 VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 93 ~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~ 126 (628)
.++++.| ....+.|++.|...
T Consensus 331 ~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 331 AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 7888887 56677888888654
No 216
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=31.63 E-value=77 Score=31.22 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=30.2
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCC-CccCCCCEEEEecCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~i~p~N 275 (628)
+|++++.+++ +++.++|+.++.. ..|+||+++.|..++
T Consensus 5 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 5 RVTEIIQETP-----TVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred EEEEEEecCC-----CeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 7788888875 6889999987322 789999999998653
No 217
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.33 E-value=1.5e+02 Score=29.77 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=45.7
Q ss_pred HHHHhHhcCCCcccCCCCcEEEEEecCCC-----CccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 523 LWLSHSLNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 523 el~~~~~~~g~l~~~~~~~~~~a~Sr~~~-----~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++-+|..+.|.=. -.+.|||.+.- +-.++-+++.+..+...+.+ ..+..|-++|+...+++++++++.+
T Consensus 38 ~i~~~~~~lgIk~-----lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~ 112 (233)
T PRK14841 38 NTVKWSLELGIKY-----LTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQE 112 (233)
T ss_pred HHHHHHHHcCCCE-----EEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChhhCCHHHHHHHHH
Confidence 3444555545331 24677887654 22444455544443333333 4588999999988899999999988
Q ss_pred HHHHh
Q 006868 597 IVSKE 601 (628)
Q Consensus 597 il~~~ 601 (628)
+-...
T Consensus 113 ~e~~T 117 (233)
T PRK14841 113 VEEKT 117 (233)
T ss_pred HHHHh
Confidence 76543
No 218
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=31.01 E-value=1.1e+02 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.8
Q ss_pred EEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC
Q 006868 11 ILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~ 46 (628)
-+|++--|+++.++..+.+.+.+.|..+.+..+++.
T Consensus 4 ~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~ 39 (76)
T TIGR00412 4 QIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM 39 (76)
T ss_pred EEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 469999999999999999999999988888888853
No 219
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=30.94 E-value=5.2e+02 Score=27.06 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=75.7
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCC-CCCccCC----------CCCCeEEEEEecC----------
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD-DYDARCL----------PEEDTVIFVVSTT---------- 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~-~~~~~~l----------~~~~~vi~~~sT~---------- 64 (628)
..++.|+.....-.+..+++...+.+++.|+.++.+.+. +.+.+++ .+-+.+++--|--
T Consensus 39 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~ 118 (299)
T PLN02516 39 VPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILN 118 (299)
T ss_pred CCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHh
Confidence 457888888888899999999999999999999999885 3332222 1223444444321
Q ss_pred ---------------------C---CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHH
Q 006868 65 ---------------------G---QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLL 120 (628)
Q Consensus 65 ---------------------g---~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~ 120 (628)
| .+-.|-+...-++.|+..+. .+.|+++.|+|-+ +-.++-+...|.
T Consensus 119 ~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvVIGRS-------~iVGkPla~lL~ 188 (299)
T PLN02516 119 EISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGI---PIKGKKAVVVGRS-------NIVGLPVSLLLL 188 (299)
T ss_pred ccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHHHH
Confidence 1 12246666666777765443 4889999999854 235788888888
Q ss_pred hcCCeE
Q 006868 121 DLGATA 126 (628)
Q Consensus 121 ~lGa~~ 126 (628)
+.||+.
T Consensus 189 ~~~ATV 194 (299)
T PLN02516 189 KADATV 194 (299)
T ss_pred HCCCEE
Confidence 888875
No 220
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=30.75 E-value=93 Score=30.66 Aligned_cols=38 Identities=16% Similarity=0.382 Sum_probs=30.2
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecC-CCCccCCCCEEEEecCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 275 (628)
+|++++.+++ ++++++|+++. ..+.|+||.++.|..++
T Consensus 4 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 4 TVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred EEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 6788888876 58899998763 35789999999998653
No 221
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=30.64 E-value=1.1e+02 Score=32.79 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHhccCcccccCC-cEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868 69 TPDSMKVFWRFLLQKSLSKQWLEG-VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 69 ~p~~~~~F~~~L~~~~~~~~~l~~-~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
|-.++....+|+... .| +++..+|. +|-|=-.+.+.+.+.+++.|++.+.+.
T Consensus 117 PNQ~~~pl~~~~~~~-------~G~~r~~lvGS---dYv~pre~Nri~r~~l~~~GgevvgE~ 169 (363)
T PF13433_consen 117 PNQQLLPLIDYLLEN-------FGAKRFYLVGS---DYVYPRESNRIIRDLLEARGGEVVGER 169 (363)
T ss_dssp GGGTHHHHHHHHHHH-------S--SEEEEEEE---SSHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred chhhHHHHHHHHHhc-------cCCceEEEecC---CccchHHHHHHHHHHHHHcCCEEEEEE
Confidence 344578888888664 36 99999994 776656667888889999999887653
No 222
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=30.46 E-value=83 Score=30.65 Aligned_cols=37 Identities=19% Similarity=0.455 Sum_probs=29.9
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
+|++.+.+|+ ++++++|+.+ ..+.|+||.++.|.-.+
T Consensus 4 ~v~~~~~~~~-----~~~~~~l~~~-~~~~~~pGQ~v~l~~~~ 40 (218)
T cd06196 4 TLLSIEPVTH-----DVKRLRFDKP-EGYDFTPGQATEVAIDK 40 (218)
T ss_pred EEEEEEEcCC-----CeEEEEEcCC-CcCCCCCCCEEEEEeeC
Confidence 6778888875 6889999877 46899999999997544
No 223
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=30.45 E-value=43 Score=36.22 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=25.7
Q ss_pred CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCc
Q 006868 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS 103 (628)
Q Consensus 67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds 103 (628)
.+.|.|+++++++++. +-|+++++++.|-.
T Consensus 389 ~~LP~~A~~Yi~~iEE-------~~gvPV~iistGP~ 418 (430)
T COG0104 389 DDLPENARKYIKRIEE-------LVGVPVTIISTGPE 418 (430)
T ss_pred HHcCHHHHHHHHHHHH-------HHCCCEEEEecCCC
Confidence 5789999999999876 56999999999843
No 224
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=29.70 E-value=78 Score=34.26 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=27.7
Q ss_pred ccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 89 ~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
.+.|++++|+|+| ..|+.+.++|+.+|.+.+.
T Consensus 113 ~L~gktvGIIG~G--------~IG~~vA~~l~a~G~~V~~ 144 (378)
T PRK15438 113 SLHDRTVGIVGVG--------NVGRRLQARLEALGIKTLL 144 (378)
T ss_pred CcCCCEEEEECcC--------HHHHHHHHHHHHCCCEEEE
Confidence 5899999999987 3589999999999998653
No 225
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.69 E-value=3.7e+02 Score=23.27 Aligned_cols=66 Identities=21% Similarity=0.306 Sum_probs=39.5
Q ss_pred EEEECCcchHHHHHHHHHHHHHhCC-CCcEEeeCCCCC--ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868 11 ILYASQTGNALDAAERIGRESERRG-CPVVVRPVDDYD--ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 11 I~Y~S~tGnte~~A~~l~~~l~~~g-~~v~~~~l~~~~--~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
.+||. |++..+|..++..+.+.| ..+...+..++. ...+.+.++ +++.|.. |..+ +..+..+..+.
T Consensus 3 ~i~G~--G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~I~iS~s--G~t~-e~~~~~~~a~~ 71 (126)
T cd05008 3 LIVGC--GTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTL-VIAISQS--GETA-DTLAALRLAKE 71 (126)
T ss_pred EEEEc--cHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcE-EEEEeCC--cCCH-HHHHHHHHHHH
Confidence 45554 789999999999999876 777776633322 122334454 4455544 4333 45555565544
No 226
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=29.45 E-value=1.7e+02 Score=29.18 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCCcEEeeCCCCCc------cCCCC-CCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEE
Q 006868 24 AERIGRESERRGCPVVVRPVDDYDA------RCLPE-EDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYA 96 (628)
Q Consensus 24 A~~l~~~l~~~g~~v~~~~l~~~~~------~~l~~-~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~a 96 (628)
++.+++.|++.|+.+..+.+=++.+ ..+.+ ++.+||.|+ .| .+.|.+.... ...+.+.+++
T Consensus 12 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~-na-------V~~~~~~~~~----~~~~~~~~~~ 79 (240)
T PRK09189 12 AERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSA-EA-------VRHLAALGER----LLPHLALPLF 79 (240)
T ss_pred hHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECH-HH-------HHHHHhcchh----hHHhcCCeEE
Confidence 4556667778898876655433321 11223 455555443 21 2333332111 1124567777
Q ss_pred EEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 97 VFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 97 VfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
++| +...+.|++.|.+.+.
T Consensus 80 aVG-------------~~Ta~~l~~~G~~~~~ 98 (240)
T PRK09189 80 AVG-------------EATAEAARELGFRHVI 98 (240)
T ss_pred EEc-------------HHHHHHHHHcCCCCCc
Confidence 776 6667778888977443
No 227
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=29.35 E-value=40 Score=27.09 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=15.1
Q ss_pred CccCCCCEEEEecCCCH
Q 006868 261 IEYEVGDVLEILPSQDP 277 (628)
Q Consensus 261 ~~y~~GD~l~i~p~N~~ 277 (628)
-.|++||.+-|+.+|+-
T Consensus 4 ~~~~~GD~VyViYrNPH 20 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPH 20 (75)
T ss_pred cccCCCCEEEEEEcCCC
Confidence 36999999999999975
No 228
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.27 E-value=4.3e+02 Score=28.02 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=18.6
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHH
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESE 32 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~ 32 (628)
..+++.|+.+|.+ ..+|+.|++.|.
T Consensus 6 ~~~~~~i~~~~~~---~~La~~ia~~lg 30 (332)
T PRK00553 6 DKSNHVIFSLSKA---KKLVDSICRKLS 30 (332)
T ss_pred CCCCeEEEECCCC---HHHHHHHHHHhC
Confidence 3566778877655 789999998774
No 229
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=29.10 E-value=6.7e+02 Score=26.03 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=28.7
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHh---CCCCcEEeeCCCC
Q 006868 7 NKLLILYASQTGNALDAAERIGRESER---RGCPVVVRPVDDY 46 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~---~g~~v~~~~l~~~ 46 (628)
|+++++||...+--+..++.+.+.+.. ..+.+..++..+.
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~ 43 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDA 43 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccc
Confidence 568999999999999999999877632 2344555554444
No 230
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=28.95 E-value=70 Score=24.89 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=22.0
Q ss_pred cCCCCccCCCCEEEEecCCCHHHHHHHHHHcC
Q 006868 257 VSAAIEYEVGDVLEILPSQDPAAVDTFIQRCN 288 (628)
Q Consensus 257 ~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~ 288 (628)
+..+...++||.|-|... ++.++++.+.||
T Consensus 42 p~~~~~l~~gD~l~v~g~--~~~i~~~~~~~g 71 (71)
T PF02080_consen 42 PDGDTVLQAGDILIVVGD--PEDIERFRELFG 71 (71)
T ss_dssp --TT-BE-TTEEEEEEEE--HHHHHHHHHHT-
T ss_pred CCCCCEECCCCEEEEEEC--HHHHHHHHHhhC
Confidence 335788999999999887 788999998876
No 231
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.89 E-value=4.2e+02 Score=28.12 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCeEee
Q 006868 111 VAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 111 a~~~l~~~L~~lGa~~v~ 128 (628)
.+|.+.+.|...|+.++.
T Consensus 126 sak~vA~lL~~~g~d~vi 143 (330)
T PRK02812 126 TAKLVANLITKAGADRVL 143 (330)
T ss_pred hHHHHHHHHHhcCCCEEE
Confidence 578899999999998874
No 232
>PRK07053 glutamine amidotransferase; Provisional
Probab=28.76 E-value=2.6e+02 Score=27.96 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=36.2
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC--CCccCCCCCCeEEEEEe
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD--YDARCLPEEDTVIFVVS 62 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~--~~~~~l~~~~~vi~~~s 62 (628)
||+|+|+--+..-+--.+++.+ ++.|..++++...+ ....++.+++.+|+..+
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L----~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Gg 56 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVL----GARGYRVRYVDVGVDDLETLDALEPDLLVVLGG 56 (234)
T ss_pred CceEEEEECCCCCCChHHHHHH----HHCCCeEEEEecCCCccCCCCccCCCEEEECCC
Confidence 6789999888887777765554 56788888887643 22335567887777553
No 233
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=28.71 E-value=94 Score=34.83 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCCcEEEEEECCcchHHHH--HHHHHHHHHhCCCCcEE--ee----CCCCCccCCCCCCeEEEEEe
Q 006868 5 KRNKLLILYASQTGNALDA--AERIGRESERRGCPVVV--RP----VDDYDARCLPEEDTVIFVVS 62 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~--A~~l~~~l~~~g~~v~~--~~----l~~~~~~~l~~~~~vi~~~s 62 (628)
..|+++.+=++.+|.+..+ |+.|.+..++.|+++++ .. .+..+.+++.+.|.+|+.+.
T Consensus 2 ~~~kivaVtacp~GiAht~mAaeaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d 67 (482)
T PRK11404 2 SSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQGSSGVENRLSSEEIAAADYVILATG 67 (482)
T ss_pred CcceEEEEecCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCccCCCCCCHHHHHhCCEEEEeec
Confidence 3468889999999987765 59999999999987652 22 24455567788888887754
No 234
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=28.65 E-value=1.6e+02 Score=31.72 Aligned_cols=79 Identities=22% Similarity=0.170 Sum_probs=43.9
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-----------CC--CCCCeEEEEEecCCCCCCChh
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR-----------CL--PEEDTVIFVVSTTGQGDTPDS 72 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-----------~l--~~~~~vi~~~sT~g~G~~p~~ 72 (628)
.++|+|.- + .. |..+++.|++.|..+..+.+=++.+. .+ ..++.+||.|+ +|
T Consensus 11 g~rIlvtr-~--~~----a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~---ng----- 75 (381)
T PRK07239 11 GFTVGVTA-A--RR----AEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTG---IG----- 75 (381)
T ss_pred CcEEEEec-c--CC----HHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeCh---HH-----
Confidence 46777763 3 23 45555666678887665543322211 11 25676665552 23
Q ss_pred HHHHHHHHHhccCc---ccccCCcEEEEEe
Q 006868 73 MKVFWRFLLQKSLS---KQWLEGVRYAVFG 99 (628)
Q Consensus 73 ~~~F~~~L~~~~~~---~~~l~~~~~aVfG 99 (628)
.+.|++++.....+ ...+.+.++++.|
T Consensus 76 v~~~~~~l~~~~~~~~~~~~l~~~~i~aVG 105 (381)
T PRK07239 76 FRGWVEAADGWGLADELLEALSSARLLARG 105 (381)
T ss_pred HHHHHHHHHHcCChHHHHHHHcCCeEEEEC
Confidence 66777777654321 1125788888887
No 235
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.47 E-value=4.4e+02 Score=27.86 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCeEee
Q 006868 111 VAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 111 a~~~l~~~L~~lGa~~v~ 128 (628)
.++.+.+.|..+|+.++.
T Consensus 114 sak~~a~lL~~~g~d~vi 131 (323)
T PRK02458 114 TAKLVANMLVKAGVDRVL 131 (323)
T ss_pred hHHHHHHHHhhcCCCeEE
Confidence 578899999999998874
No 236
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=28.37 E-value=64 Score=29.26 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=30.2
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC
Q 006868 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~ 46 (628)
+++.|....|-+|.++..++++|.+.|+++.++....-
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 34557888999999999999999999999999876543
No 237
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=28.10 E-value=1.5e+02 Score=25.12 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=29.9
Q ss_pred EEEEEECCcchHHHH--HHHHHHHHHhCCCCcEEeeCCC
Q 006868 9 LLILYASQTGNALDA--AERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 9 v~I~Y~S~tGnte~~--A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
|.|+|.|.+|+.+-. .+++...|...|++.+-++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC
Confidence 679999999987644 5778888888999888888763
No 238
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=27.69 E-value=78 Score=34.18 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=27.7
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCC
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGC 36 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~ 36 (628)
.||+|+|+.+|..|-=...|+.|.+.+++.+.
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~ 35 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNL 35 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCC
Confidence 46889999999987889999999999987653
No 239
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.63 E-value=1.5e+02 Score=30.92 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=32.6
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEe
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVR 41 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~ 41 (628)
+++|.|++-...-.+..++++|.+.|.++|+.+.+.
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~ 40 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLD 40 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 778999999999999999999999999999887664
No 240
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.59 E-value=2.3e+02 Score=25.68 Aligned_cols=105 Identities=19% Similarity=0.154 Sum_probs=60.1
Q ss_pred EEEEEECCcchHHHHHHHH-HHHHHhCCCCcEEeeCCCCCccCC----CCCCe-EEEEEecCCCCCCChhHHHHHHHHHh
Q 006868 9 LLILYASQTGNALDAAERI-GRESERRGCPVVVRPVDDYDARCL----PEEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l-~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~-vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
+.|+-++..|..-.....+ +..|+..|++|.-...+ .+++++ .+.+. +|.+|++. +...+.+....+.|+.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~--~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLA--GGHLTLVPALRKELDK 79 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCch--hhhHHHHHHHHHHHHh
Confidence 4566677777776666554 44556778765443333 222332 13343 44455544 7777888888888866
Q ss_pred ccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecce
Q 006868 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~ 131 (628)
.. +.... |+.-|.- + +.-.+.|+++|..+++..+
T Consensus 80 ~g-----~~~i~--vivGG~~--~------~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 80 LG-----RPDIL--VVVGGVI--P------PQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred cC-----CCCCE--EEEeCCC--C------hHhHHHHHHCCCCEEECCC
Confidence 53 22233 3333422 1 2223458899999888754
No 241
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=27.31 E-value=98 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=36.9
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC
Q 006868 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD 47 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~ 47 (628)
+.+.+.|+|+...-++..+|..+.+.+.+.++++.+.-....|
T Consensus 127 ~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D 169 (211)
T COG2454 127 EPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNAD 169 (211)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcC
Confidence 4567899999999999999999999999999987777666655
No 242
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=27.22 E-value=3.8e+02 Score=26.15 Aligned_cols=92 Identities=14% Similarity=0.267 Sum_probs=57.6
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC---CCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006868 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD---YDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~---~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
..+++.+ ||+. .+-..+...+.+.|+.|.+.+--+ +....+.+.+.+.+..||- |.-|.-++..-+.++..
T Consensus 70 ~~lVi~a-t~d~-~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~--G~sP~la~~lr~~ie~~-- 143 (205)
T TIGR01470 70 AFLVIAA-TDDE-ELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSG--GAAPVLARLLRERIETL-- 143 (205)
T ss_pred cEEEEEC-CCCH-HHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECC--CCCcHHHHHHHHHHHHh--
Confidence 3455555 6774 556778888888887665444222 2111223455688888876 67777777666666442
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHh
Q 006868 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD 121 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~ 121 (628)
|+ ..|..+......+.+.+++
T Consensus 144 ------------l~---~~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 144 ------------LP---PSLGDLATLAATWRDAVKK 164 (205)
T ss_pred ------------cc---hhHHHHHHHHHHHHHHHHh
Confidence 11 2577788888888877775
No 243
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=27.14 E-value=1.1e+02 Score=30.01 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=29.8
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
+|++.+.+|+ +++.++|..+ ....|+||+++.|..+.
T Consensus 4 ~v~~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 4 TIVAQERLTH-----DIVRLTVQLD-RPIAYKAGQYAELTLPG 40 (227)
T ss_pred EEEEEeecCC-----CEEEEEEecC-CCCCcCCCCEEEEEeCC
Confidence 6778888875 6888988876 45789999999998753
No 244
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=27.12 E-value=5e+02 Score=28.52 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEE
Q 006868 18 GNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAV 97 (628)
Q Consensus 18 Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aV 97 (628)
.+++++|..|++.|.+.|+. .++.+||+ |.-+....-..+.|++. |..+..
T Consensus 319 ~~a~~~g~eIa~~Lk~dgVD-------------------AvILtstC--gtCtrcga~m~keiE~~--------GIPvV~ 369 (431)
T TIGR01917 319 ANSKQFAKEFSKELLAAGVD-------------------AVILTSTU--GTCTRCGATMVKEIERA--------GIPVVH 369 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCC-------------------EEEEcCCC--CcchhHHHHHHHHHHHc--------CCCEEE
Confidence 35778899999988876642 56778888 56667766677777654 455555
Q ss_pred EecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006868 98 FGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 98 fGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
++. +-..-+..|+.|+.|.
T Consensus 370 i~~--------------~~pI~~~vGanRiv~~ 388 (431)
T TIGR01917 370 ICT--------------VTPIALTVGANRIIPA 388 (431)
T ss_pred Eee--------------chhHHHhcCCCceecC
Confidence 541 1223457899999874
No 245
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=27.02 E-value=1.6e+02 Score=34.01 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=58.0
Q ss_pred EECCcc----hHHHHHHHHHHHHHhCCCC-cEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868 13 YASQTG----NALDAAERIGRESERRGCP-VVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 13 Y~S~tG----nte~~A~~l~~~l~~~g~~-v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~ 83 (628)
-||-+. ++.++|.++-..|.+.|++ +++..+.++....=--|+.+.+.++|-..| .|+.++.|++...+.
T Consensus 152 vGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryG-tPedfk~fVD~aH~~ 226 (628)
T COG0296 152 VGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYG-TPEDFKALVDAAHQA 226 (628)
T ss_pred eeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCC-CHHHHHHHHHHHHHc
Confidence 477777 8999999999999999996 789999998755444788999998888655 678899999987654
No 246
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.99 E-value=5.5e+02 Score=26.67 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=76.6
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-CccCC----------CCCCeEEEEEecC----------
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----------PEEDTVIFVVSTT---------- 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~~~l----------~~~~~vi~~~sT~---------- 64 (628)
..++.|+....--.+..+++...+.+++.|+.++++.+.+. +.+++ .+-+.+++--|--
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~ 112 (284)
T PRK14177 33 IPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFD 112 (284)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 35688888888888999999999999999999999988653 22222 1334555554421
Q ss_pred ---------------------CC-CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhc
Q 006868 65 ---------------------GQ-GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (628)
Q Consensus 65 ---------------------g~-G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~l 122 (628)
|+ +-.|-+...-++.|+.... .+.|+++.|+|-+ +-.++-+...|.+-
T Consensus 113 ~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~i---~l~Gk~vvViGrS-------~iVGkPla~lL~~~ 182 (284)
T PRK14177 113 RIALEKDVDGVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYGI---DVTGKNAVVVGRS-------PILGKPMAMLLTEM 182 (284)
T ss_pred ccCcccccccCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHHHHC
Confidence 11 1235666666666665443 3889999999854 23578888888888
Q ss_pred CCeEe
Q 006868 123 GATAV 127 (628)
Q Consensus 123 Ga~~v 127 (628)
||+..
T Consensus 183 ~atVt 187 (284)
T PRK14177 183 NATVT 187 (284)
T ss_pred CCEEE
Confidence 88753
No 247
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=40 Score=29.32 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 006868 585 KMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGR 621 (628)
Q Consensus 585 ~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~R 621 (628)
.+...=-+-|.+=+.+.|.++.++|.+|+.+|.++.+
T Consensus 20 a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k 56 (108)
T COG3937 20 AETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAK 56 (108)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4444444556666788999999999999999988765
No 248
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=26.85 E-value=4e+02 Score=22.76 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhccCcccccCCcEEEEEecCCc---ChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCC
Q 006868 72 SMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS---GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP 138 (628)
Q Consensus 72 ~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds---~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~ 138 (628)
-..++.+.|+.. |.+|-+=.+|-. .|..-..+.+...+.+.+.|+.|+.-...+|+..+
T Consensus 20 yVa~~i~~l~~s--------Gl~y~~~pm~T~IEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R~d 81 (97)
T TIGR00106 20 YVAAAIEVLKES--------GLKYELHPMGTLIEGDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTRTD 81 (97)
T ss_pred HHHHHHHHHHHc--------CCCeEecCCccEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecCC
Confidence 344555556432 444444433322 48888889999999999999999999999999865
No 249
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=26.84 E-value=2.7e+02 Score=27.90 Aligned_cols=81 Identities=27% Similarity=0.392 Sum_probs=50.8
Q ss_pred HHHHHHHHhCCCCcEEeeC---CC--CCc------cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCc
Q 006868 25 ERIGRESERRGCPVVVRPV---DD--YDA------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGV 93 (628)
Q Consensus 25 ~~l~~~l~~~g~~v~~~~l---~~--~~~------~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~ 93 (628)
..|.+.|.+.|+.+..+.+ .- .+. ......+.++|-||.. ++.|++.+.....+ .+.++
T Consensus 136 ~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~--------v~~~~~~~~~~~~~--~~~~~ 205 (248)
T COG1587 136 EVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSA--------VRALLALAPESGIE--FLERK 205 (248)
T ss_pred HHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHH--------HHHHHHHccccchh--HhhCc
Confidence 5677788888877654433 11 111 1123566677766654 77787776544322 35678
Q ss_pred EEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 94 RYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 94 ~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
+++.+| ....+.++++|.+...
T Consensus 206 ~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 206 RVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred eEEEec-------------HHHHHHHHHcCCccee
Confidence 888887 6777788999988643
No 250
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.79 E-value=1.4e+02 Score=29.02 Aligned_cols=32 Identities=47% Similarity=0.613 Sum_probs=26.5
Q ss_pred cccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v 127 (628)
..++|++++|.|+|. +++.+.+.|.+.|++.+
T Consensus 24 ~~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 24 DSLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 348999999999872 57888889999999765
No 251
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=26.72 E-value=1e+02 Score=33.50 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=27.3
Q ss_pred cccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v 127 (628)
..+.|++++|+|+|+ .++.+.++|+.+|.+.+
T Consensus 112 ~~l~gktvGIIG~G~--------IG~~va~~l~a~G~~V~ 143 (381)
T PRK00257 112 VDLAERTYGVVGAGH--------VGGRLVRVLRGLGWKVL 143 (381)
T ss_pred CCcCcCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 358999999999873 58999999999999865
No 252
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=26.55 E-value=1.1e+02 Score=32.41 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=46.9
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC-------CCCCeEEEEEecCCCCCCChhHHHHHH
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL-------PEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l-------~~~~~vi~~~sT~g~G~~p~~~~~F~~ 78 (628)
-++|.|||+.+.+.+.|+.|. +.|+.+.++++..+.+-+. .+.+.||++=-.+-.|..-.....++.
T Consensus 204 i~iva~G~~~~~a~eAa~~L~----~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~ 277 (327)
T PRK09212 204 VTIVTFSIQVKLALEAAELLE----KEGISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIM 277 (327)
T ss_pred EEEEEccHHHHHHHHHHHHHH----hcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHH
Confidence 356779999998888888764 4689999998877654332 256677777666656666666555554
No 253
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=26.52 E-value=1.6e+02 Score=33.76 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=60.4
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc------cCCC-CCCeEEEEEecCCCC------------C
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA------RCLP-EEDTVIFVVSTTGQG------------D 68 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~------~~l~-~~~~vi~~~sT~g~G------------~ 68 (628)
.-.|+|.+.-- -++.+++.|.+.|+.+..+.-.--+. ..+. +.-.+++.|.-+|-| +
T Consensus 231 ~~GIIYc~sRk----~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 231 KSGIIYCLTRK----KVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred CCeEEEEeeHH----hHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEec
Confidence 34688887554 45555555555688777666432111 1122 333577777777777 7
Q ss_pred CChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChh
Q 006868 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQ 106 (628)
Q Consensus 69 ~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~ 106 (628)
+|.+.+.++.+.-+. .++.+....+..|+.+|..|-
T Consensus 307 lP~s~EsYyQE~GRA--GRDG~~a~aill~~~~D~~~~ 342 (590)
T COG0514 307 LPGSIESYYQETGRA--GRDGLPAEAILLYSPEDIRWQ 342 (590)
T ss_pred CCCCHHHHHHHHhhc--cCCCCcceEEEeeccccHHHH
Confidence 899999999987544 344467778889999998764
No 254
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=26.43 E-value=2.7e+02 Score=28.23 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhCCCCcEEee----C-CC----CC-----ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006868 19 NALDAAERIGRESERRGCPVVVRP----V-DD----YD-----ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 19 nte~~A~~l~~~l~~~g~~v~~~~----l-~~----~~-----~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
+...+|+.|.+.+.+.|+++..++ . ++ +| +-.+.....||.++.. .-..+....+|=+.|....
T Consensus 78 ~d~ela~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~pvV~is~~--~~~~~~~~~~lG~aL~~~~ 155 (256)
T cd07952 78 NDRELANEIYKSARADGIPVLGINFATSSGDNSDFPLDWGELIPLSFLKKRPIVLITPP--RLLPREELVEFGRALGKAL 155 (256)
T ss_pred CCHHHHHHHHHHHHHcCCceeeccchhhccccCCCCCCccccccHhhCCCCCeEEEccc--cCCCHHHHHHHHHHHHHHH
Confidence 467889999999988888755443 0 00 11 0011222345544431 2224555556655554421
Q ss_pred CcccccCCcEEEEEecCCcCh
Q 006868 85 LSKQWLEGVRYAVFGLGDSGY 105 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y 105 (628)
. -.+.+++|+|+||-+.
T Consensus 156 -~---~~~~~vliIaSGdlSH 172 (256)
T cd07952 156 -E---GYEKRVAVIISADHAH 172 (256)
T ss_pred -H---hcCCcEEEEEecCccc
Confidence 0 1357899999998665
No 255
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=26.37 E-value=88 Score=30.79 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=26.2
Q ss_pred eeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006868 236 KNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 236 ~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
+.+.+|+ ++++++|+.+ ....|+||.++.|..++
T Consensus 3 ~~~~~t~-----~~~~~~l~~~-~~~~~~pGQ~v~l~~~~ 36 (232)
T cd06190 3 DVRELTH-----DVAEFRFALD-GPADFLPGQYALLALPG 36 (232)
T ss_pred ceEEcCC-----CEEEEEEEcC-CccccCCCCEEEEECCC
Confidence 4445554 6889999877 45789999999998764
No 256
>PRK11538 ribosome-associated protein; Provisional
Probab=26.15 E-value=2.1e+02 Score=24.88 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHh-CCCCcEEeeCCCCCccCCCCCCeEEEEEecC
Q 006868 20 ALDAAERIGRESER-RGCPVVVRPVDDYDARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 20 te~~A~~l~~~l~~-~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~ 64 (628)
++.+++.+.+.|.+ +|..+.++++.+... -.+.+|+++.+-
T Consensus 3 ~~~~~~~i~~~l~dkKa~DI~vlDv~~~~~----~~Dy~VIatg~S 44 (105)
T PRK11538 3 GKALQDFVIDKIDDLKGQDIIALDVQGKSS----ITDCMIICTGTS 44 (105)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCCc----ccCEEEEEEeCC
Confidence 46788888888884 567799999887542 235677776655
No 257
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=25.87 E-value=26 Score=34.54 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=48.8
Q ss_pred HHHHHHHhCCCCcEEeeCCCCCc-----------cCCC--CCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCC
Q 006868 26 RIGRESERRGCPVVVRPVDDYDA-----------RCLP--EEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEG 92 (628)
Q Consensus 26 ~l~~~l~~~g~~v~~~~l~~~~~-----------~~l~--~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~ 92 (628)
++++.|++.|+++..+.+-.+.+ ..+. .++.+||.|+ . .++.|++.+.........+.+
T Consensus 2 ~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~-~-------av~~~~~~l~~~~~~~~~~~~ 73 (231)
T PF02602_consen 2 ELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSP-N-------AVRAFFKALQSAGADLRLLKN 73 (231)
T ss_dssp HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSH-H-------HHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECH-H-------HHHHHHHHHhhhhhhhhhccC
Confidence 57788888998776655543332 2233 6776666544 2 267777877632222223567
Q ss_pred cEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868 93 VRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (628)
Q Consensus 93 ~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v 127 (628)
.++.+.| +...+.|.+.|.+..
T Consensus 74 ~~i~avG-------------~~Ta~~l~~~G~~~~ 95 (231)
T PF02602_consen 74 IKIFAVG-------------PKTAEALREYGFQPD 95 (231)
T ss_dssp SEEEESS-------------HHHHHHHHHTT-EEC
T ss_pred CeEEEEc-------------HHHHHHHHHcCCCcc
Confidence 7877776 566667888887764
No 258
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=25.64 E-value=57 Score=30.64 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=27.1
Q ss_pred CcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC
Q 006868 16 QTGNALDAAERIGRESERRGCPVVVRPVDDYD 47 (628)
Q Consensus 16 ~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~ 47 (628)
.+|++-++|..|+..|.++|++|.+.+-++|.
T Consensus 3 L~G~~sKvaraiA~~LC~rgv~V~m~~~~~y~ 34 (164)
T PF12076_consen 3 LTGNTSKVARAIALALCRRGVQVVMLSKERYE 34 (164)
T ss_pred ecccccHHHHHHHHHHHhcCCEEEEecHHHHH
Confidence 47999999999999999999998887655543
No 259
>PRK08250 glutamine amidotransferase; Provisional
Probab=25.61 E-value=3e+02 Score=27.53 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=35.8
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC--ccCCCCCCeEEEEEecC
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~--~~~l~~~~~vi~~~sT~ 64 (628)
|+|+|+.....-..+.++..+ .+.|+++++..+..-. +.++.+++.+|+..+..
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~----~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~ 56 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWA----ENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQ 56 (235)
T ss_pred CeEEEEecCCCCCchHHHHHH----HHCCCeEEEEEccCCCCCCCCccccCEEEECCCCC
Confidence 468888888777777766666 4578888877654422 12455788887766544
No 260
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=25.46 E-value=1e+02 Score=26.53 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=44.3
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcc
Q 006868 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK 87 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~ 87 (628)
|+++=+ ..=+|.-+|+++.+.++++|+++++........ ..+.++| +|+.+|- .+..++.+++...
T Consensus 3 Ill~C~-~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~D-vill~PQ---------v~~~~~~i~~~~~-- 69 (99)
T cd05565 3 VLVLCA-GGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYD-LVILAPQ---------MASYYDELKKDTD-- 69 (99)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCC-EEEEcCh---------HHHHHHHHHHHhh--
Confidence 444433 337899999999999999999877655433222 2344666 4444443 3344455544321
Q ss_pred cccCCcEEEEE
Q 006868 88 QWLEGVRYAVF 98 (628)
Q Consensus 88 ~~l~~~~~aVf 98 (628)
-.|+.+.++
T Consensus 70 --~~~ipv~~I 78 (99)
T cd05565 70 --RLGIKLVTT 78 (99)
T ss_pred --hcCCCEEEe
Confidence 236677776
No 261
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=25.29 E-value=84 Score=33.31 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=44.1
Q ss_pred cCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCCC------CCCC
Q 006868 400 VPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP------PPSV 473 (628)
Q Consensus 400 lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp------~~~~ 473 (628)
.|...+|+|-+.-.| ++==| .-.|--|.||+.|+. |++|.+-...|+-+.- -..+
T Consensus 217 ~pYva~RPFRVNAGa------VhaYv-----------~~pgg~T~YLsEL~s--G~eVlvVd~~G~tR~~~VGRvKIE~R 277 (344)
T PRK02290 217 NPYVASRPFRVNAGA------VHAYV-----------RVPGDKTRYLSELRS--GDEVLVVDADGNTREAIVGRVKIEKR 277 (344)
T ss_pred CCCccCCCeeEecCc------ceeEE-----------EcCCCcchhhHhhcC--CCEEEEEeCCCCEEEEEeeEEEEeec
Confidence 356688999885544 33222 123666999999999 9999998888864321 2568
Q ss_pred CEEEEeCC
Q 006868 474 PLILIGPG 481 (628)
Q Consensus 474 piimIa~G 481 (628)
|+++|-+=
T Consensus 278 PL~lIeAe 285 (344)
T PRK02290 278 PLLLIEAE 285 (344)
T ss_pred cEEEEEEE
Confidence 99998763
No 262
>COG4195 Phage-related replication protein [General function prediction only]
Probab=25.27 E-value=1.6e+02 Score=28.36 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHHHhCCCCcEEeeCCC
Q 006868 17 TGNALDAAERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 17 tGnte~~A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
.|+-++.|..|++.|+..||..++.++++
T Consensus 119 GG~dR~~aa~i~~~L~~aGF~a~L~~~~~ 147 (208)
T COG4195 119 GGTDRELAAHIARALQLAGFSAELANSKH 147 (208)
T ss_pred cCccHHHHHHHHHHHhhCCccHHhhcCCC
Confidence 58889999999999999999977776654
No 263
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=25.11 E-value=1.4e+02 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=30.6
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCC-C-CccCCCCEEEEecCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSA-A-IEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~-~-~~y~~GD~l~i~p~N 275 (628)
+|+++..+++ ++++++|+.+.. . ..|+||+++.|...+
T Consensus 10 ~v~~~~~~s~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 49 (247)
T cd06184 10 VVARKVAESE-----DITSFYLEPADGGPLPPFLPGQYLSVRVKL 49 (247)
T ss_pred EEEEEEEcCC-----CeEEEEEEeCCCCcCCCCCCCCEEEEEEec
Confidence 8888888875 688999998732 2 789999999998654
No 264
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=25.01 E-value=1.6e+02 Score=30.55 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCccCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEe
Q 006868 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVR 41 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~ 41 (628)
||.. +++|.|++-...-.+..+++.+.+.|++.|+.+.+.
T Consensus 1 ~~~~-~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~ 40 (291)
T PRK02155 1 MKSQ-FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFE 40 (291)
T ss_pred CCCc-CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 5543 667999999888889999999999999999875553
No 265
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.95 E-value=7.9e+02 Score=25.50 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=74.7
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC-CCccCC----------CCCCeEEEEEecC-----------
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD-YDARCL----------PEEDTVIFVVSTT----------- 64 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~-~~~~~l----------~~~~~vi~~~sT~----------- 64 (628)
.++.|+....-.-+..+++...+.+++.|+.++++.+.. .+.+++ .+-+.+++--|--
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~ 113 (285)
T PRK10792 34 PGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLER 113 (285)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence 567888888888899999999999999999999998864 222222 1223455544421
Q ss_pred --------------------C-CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcC
Q 006868 65 --------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLG 123 (628)
Q Consensus 65 --------------------g-~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lG 123 (628)
| .+-.|-+...-++.|+.... .+.|+++.|+|-|. -.++-+...|...|
T Consensus 114 I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i---~l~Gk~vvViGrs~-------iVG~Pla~lL~~~~ 183 (285)
T PRK10792 114 IHPDKDVDGFHPYNVGRLAQRIPLLRPCTPRGIMTLLERYGI---DTYGLNAVVVGASN-------IVGRPMSLELLLAG 183 (285)
T ss_pred cCcccccCccChhhHhHHhCCCCCCCCCCHHHHHHHHHHcCC---CCCCCEEEEECCCc-------ccHHHHHHHHHHCC
Confidence 0 11135556666666655443 38899999998542 24788888888889
Q ss_pred CeE
Q 006868 124 ATA 126 (628)
Q Consensus 124 a~~ 126 (628)
|+.
T Consensus 184 atV 186 (285)
T PRK10792 184 CTV 186 (285)
T ss_pred CeE
Confidence 875
No 266
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=24.61 E-value=95 Score=32.90 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=31.6
Q ss_pred CcEEEEEECC-cchHHHHHHHHHHHHHhCCCCcEEeeCC
Q 006868 7 NKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVD 44 (628)
Q Consensus 7 ~~v~I~Y~S~-tGnte~~A~~l~~~l~~~g~~v~~~~l~ 44 (628)
|+|++++-+. .|-+|+.+..+++.|.+.|++|.++...
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 5677777664 5899999999999999999999888653
No 267
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=24.46 E-value=99 Score=32.47 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=42.9
Q ss_pred CCcEEEEEECCcch-HHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCC
Q 006868 6 RNKLLILYASQTGN-ALDAAERIGRESERRGCPVVVRPVDDYDARCLPEED 55 (628)
Q Consensus 6 ~~~v~I~Y~S~tGn-te~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~ 55 (628)
-+++.|+-||.+|. ...++++|.+.+++.|.+..++.+++.+++.|.+.+
T Consensus 212 A~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~ 262 (308)
T TIGR03682 212 AKKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNLD 262 (308)
T ss_pred CCeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcCC
Confidence 46799999999885 567899999999999999999999999988776543
No 268
>TIGR02619 putative CRISPR-associated protein, APE2256 family. This model represents a conserved domain of about 150 amino acids found in at least five archaeal species and three bacterial species, exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In six of eight species, the member of this family is in the vicinity of a CRISPR/Cas locus.
Probab=24.33 E-value=1.1e+02 Score=28.46 Aligned_cols=31 Identities=29% Similarity=0.201 Sum_probs=27.5
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCC
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCP 37 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~ 37 (628)
..-+++|.|.|++.+..|+.+.+.+++.|..
T Consensus 34 ~d~~~Ll~SDT~~G~~~a~ilk~yl~~~~~~ 64 (149)
T TIGR02619 34 DDKAILYHSDTAQGRFCASILKRFLERELRA 64 (149)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHHHHHHhccc
Confidence 4458999999999999999999999987765
No 269
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=24.26 E-value=92 Score=31.26 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=27.6
Q ss_pred eeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006868 235 IKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 235 ~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
++.+.+|+ ++++|+|+.+.....|+||+++.|..+.
T Consensus 2 ~~~~~~t~-----~v~~l~l~~~~~~~~~~pGQ~v~l~~~~ 37 (246)
T cd06218 2 LSNREIAD-----DIYRLVLEAPEIAAAAKPGQFVMLRVPD 37 (246)
T ss_pred cceeEecC-----CeEEEEEeCcchhccCCCCcEEEEEeCC
Confidence 44556654 6889999987436789999999998764
No 270
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=24.16 E-value=1.5e+02 Score=28.97 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=30.7
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecC-CCCccCCCCEEEEecCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 275 (628)
+|++.+.+++ +++.|+|+.++ ....|+||.++.|..+.
T Consensus 5 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 5 TVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred EEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 7888888875 68899999874 35789999999997653
No 271
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.10 E-value=3.7e+02 Score=27.36 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHhHhcCCCcccCCCCcEEEEEecCCCC--cc---chhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 523 LWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KV---YVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 523 el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~--k~---yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++-+|..+.|.=. -.+.|||.+.-. +. .+.+++......+.+.+ ..+..|-++|+...+++++.+++.+
T Consensus 57 ~~l~~c~~~GI~~-----vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~viG~~~~Lp~~~~~~~~~ 131 (251)
T PRK14830 57 KITKAASELGVKV-----LTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEK 131 (251)
T ss_pred HHHHHHHHcCCCE-----EEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcChhhCCHHHHHHHHH
Confidence 3445554434332 235567766532 22 33333333323322222 3478888888876777777777666
Q ss_pred HHH
Q 006868 597 IVS 599 (628)
Q Consensus 597 il~ 599 (628)
+-.
T Consensus 132 ~e~ 134 (251)
T PRK14830 132 AIE 134 (251)
T ss_pred HHH
Confidence 543
No 272
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=24.06 E-value=1.2e+02 Score=29.52 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=27.0
Q ss_pred eeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006868 235 IKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 235 ~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
++.+.+++ ++++++|+.+ ....|+||.++.|..++
T Consensus 2 ~~~~~~~~-----~~~~~~l~~~-~~~~~~pGq~i~l~~~~ 36 (224)
T cd06187 2 VSVERLTH-----DIAVVRLQLD-QPLPFWAGQYVNVTVPG 36 (224)
T ss_pred eeeeecCC-----CEEEEEEEeC-CCCCcCCCceEEEEcCC
Confidence 44556654 6889999987 34889999999998654
No 273
>PRK09065 glutamine amidotransferase; Provisional
Probab=24.01 E-value=2.1e+02 Score=28.68 Aligned_cols=42 Identities=21% Similarity=-0.011 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCcEEeeCCCCC-ccCCCCCCeEEEEEecC
Q 006868 23 AAERIGRESERRGCPVVVRPVDDYD-ARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 23 ~A~~l~~~l~~~g~~v~~~~l~~~~-~~~l~~~~~vi~~~sT~ 64 (628)
+++.+...+...|++++++++..-+ ..++.+++.+|+..+-.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~ 65 (237)
T PRK09065 23 FPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWA 65 (237)
T ss_pred HHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCc
Confidence 4566666777778888887776532 23566788777765544
No 274
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=23.98 E-value=1.3e+02 Score=29.49 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=29.0
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCC-CccCCCCEEEEecC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAA-IEYEVGDVLEILPS 274 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~-~~y~~GD~l~i~p~ 274 (628)
+|++.+.+|+ ++++++|+.+... ..|+||.++.|.-+
T Consensus 2 ~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~ 39 (231)
T cd06215 2 RCVKIIQETP-----DVKTFRFAAPDGSLFAYKPGQFLTLELE 39 (231)
T ss_pred eEEEEEEcCC-----CeEEEEEECCCCCcCCcCCCCeEEEEEe
Confidence 5677788875 6889999987332 78999999999744
No 275
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=23.98 E-value=3e+02 Score=28.42 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhCCCCcEEeeCCCCCcc--------CC-CCCCe-EEEEEecCCCCCCChhHHHHHHHHHhccCcccc
Q 006868 20 ALDAAERIGRESERRGCPVVVRPVDDYDAR--------CL-PEEDT-VIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQW 89 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~~~l~~~~~~--------~l-~~~~~-vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~ 89 (628)
...+|+.|++.+.+.|+.+......+...+ -+ ++.+. +|-++..+ ..-.+.....|=+.|...-.
T Consensus 95 d~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~-~~~~~~~~~~lG~al~~~i~---- 169 (282)
T TIGR02298 95 NPALGQLIADEAQEHGVKTLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWC-TVHDIEESRALGEAIRKAIE---- 169 (282)
T ss_pred CHHHHHHHHHHHHHCCCceeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecC-CCCCHHHHHHHHHHHHHHHH----
Confidence 477999999999999997654332222110 01 12332 33333322 13344454555444543210
Q ss_pred cCCcEEEEEecCCcChh
Q 006868 90 LEGVRYAVFGLGDSGYQ 106 (628)
Q Consensus 90 l~~~~~aVfGlGds~y~ 106 (628)
-.+.+++|+|+||.+..
T Consensus 170 ~~~~rV~iIaSG~lSH~ 186 (282)
T TIGR02298 170 QSDGRVAVLASGSLSHR 186 (282)
T ss_pred hcCCCEEEEEeccccee
Confidence 14688999999998773
No 276
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=23.94 E-value=5.5e+02 Score=28.40 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCeEee
Q 006868 111 VAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 111 a~~~l~~~L~~lGa~~v~ 128 (628)
.++.+.+.|+.+|+.+|.
T Consensus 224 sak~vA~lL~~~G~d~Vi 241 (439)
T PTZ00145 224 SAADVARMIEAMGVDRVV 241 (439)
T ss_pred hHHHHHHHHHHcCCCeEE
Confidence 578999999999998875
No 277
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=23.94 E-value=1.3e+02 Score=25.60 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=34.7
Q ss_pred EEEECCcc--hHHHHHHHHHHHHHhCCCCcEEee------CCCCCccCCCCCCeEEEEEecC
Q 006868 11 ILYASQTG--NALDAAERIGRESERRGCPVVVRP------VDDYDARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 11 I~Y~S~tG--nte~~A~~l~~~l~~~g~~v~~~~------l~~~~~~~l~~~~~vi~~~sT~ 64 (628)
++-+.-+| ++--.|+.|.+.+++.|+++.+-. .+.++..++...+.+|++..+-
T Consensus 3 ~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 3 AVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 33444444 556677999999999999866331 2334445666788777765543
No 278
>PTZ00445 p36-lilke protein; Provisional
Probab=23.89 E-value=3.7e+02 Score=26.74 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-----CCCCC-CeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccC
Q 006868 18 GNALDAAERIGRESERRGCPVVVRPVDDYDAR-----CLPEE-DTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLE 91 (628)
Q Consensus 18 Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-----~l~~~-~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~ 91 (628)
=|....|+.+.+.|++.|+++-++|+|..-.. -.... +...++.+ .++..+.+.+.|.+ .
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~------~tpefk~~~~~l~~--------~ 90 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTS------VTPDFKILGKRLKN--------S 90 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhcc------CCHHHHHHHHHHHH--------C
Confidence 36788999999999999999999998864322 01110 11111111 34555555555543 3
Q ss_pred CcEEEEEecCCcCh------hHHHHHHHHHHHHHHhcCCeE
Q 006868 92 GVRYAVFGLGDSGY------QKFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 92 ~~~~aVfGlGds~y------~~f~~a~~~l~~~L~~lGa~~ 126 (628)
|.+++|.-.-|..- +.|-...+.+...|+.-++.-
T Consensus 91 ~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~ 131 (219)
T PTZ00445 91 NIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDF 131 (219)
T ss_pred CCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccc
Confidence 67888887766522 356777788888888666653
No 279
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.68 E-value=61 Score=28.68 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=26.3
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD 47 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~ 47 (628)
.-++|.|||+...+.+.|+.|.+ .|+.+.++++..+.
T Consensus 11 di~iia~G~~~~~al~A~~~L~~----~Gi~~~vi~~~~i~ 47 (124)
T PF02780_consen 11 DITIIAYGSMVEEALEAAEELEE----EGIKAGVIDLRTIK 47 (124)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHH----TTCEEEEEEEEEEE
T ss_pred CEEEEeehHHHHHHHHHHHHHHH----cCCceeEEeeEEEe
Confidence 34567788888777777666655 59988888876543
No 280
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.52 E-value=5.7e+02 Score=26.92 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCeEeec
Q 006868 111 VAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 111 a~~~l~~~L~~lGa~~v~~ 129 (628)
.+|.+.+.|...|+.++.-
T Consensus 110 sak~~a~ll~~~g~d~vit 128 (320)
T PRK02269 110 TSKLVANMLEVAGVDRLLT 128 (320)
T ss_pred hHHHHHHHHhhcCCCEEEE
Confidence 4788999999999998753
No 281
>PRK13236 nitrogenase reductase; Reviewed
Probab=23.25 E-value=1.1e+02 Score=31.80 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCccCCCcEEEEEECCcchHHHH-HHHHHHHHHhCCCCcEEeeCCC
Q 006868 1 MREEKRNKLLILYASQTGNALDA-AERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~tGnte~~-A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
|++++|+.+.+ +| ..|.-+-. |--|+..|.+.|.+|-++|+|-
T Consensus 1 ~~~~~~~~~~~-~G-KGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 1 MTDENIRQIAF-YG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred CCCcCceEEEE-EC-CCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 88888754444 66 77766554 6778888888999999999773
No 282
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=23.19 E-value=2.9e+02 Score=29.27 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhCCCCcEE
Q 006868 20 ALDAAERIGRESERRGCPVVV 40 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~ 40 (628)
...+|+.|.+.+.+.|+.+..
T Consensus 99 d~eLA~~I~~~l~~~G~dva~ 119 (329)
T cd07369 99 NPEVAEQLLRALVHDSFDCAR 119 (329)
T ss_pred CHHHHHHHHHHHHHCCCCeee
Confidence 678999999999999987653
No 283
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=22.79 E-value=2.8e+02 Score=23.66 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCc
Q 006868 24 AERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS 103 (628)
Q Consensus 24 A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds 103 (628)
++.|...|.+.|+.. .+ +..+.|++|+-|.|. ....-..+...+..+.+.+ -.+.++.|-||.-.
T Consensus 16 se~i~~~l~~~G~~~--~~-------~~e~AD~iiiNTC~V-~~~Ae~k~~~~i~~l~~~~-----~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 16 SERIASILQAAGYEI--VD-------DPEEADVIIINTCTV-RESAEQKSRNRIRKLKKLK-----KPGAKIVVTGCMAQ 80 (98)
T ss_pred HHHHHHHHHhcCCee--ec-------ccccCCEEEEEcCCC-CcHHHHHHHHHHHHHHHhc-----CCCCEEEEEeCccc
Confidence 567777888888742 11 224567888888887 5555555555566555443 14689999998654
Q ss_pred Ch
Q 006868 104 GY 105 (628)
Q Consensus 104 ~y 105 (628)
.+
T Consensus 81 ~~ 82 (98)
T PF00919_consen 81 RY 82 (98)
T ss_pred cC
Confidence 44
No 284
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=22.72 E-value=2.7e+02 Score=23.55 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHhccCcccccCCcEEEEEecCCc---ChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCC
Q 006868 68 DTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS---GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHP 138 (628)
Q Consensus 68 ~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds---~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~ 138 (628)
...+-.....+.|++ +|.+|-+-.+|-. .|..-..+.+.+.+.+.+.|+.|+.-...+|+..+
T Consensus 14 s~~~~V~~~i~~i~~--------sgl~y~v~pm~T~iEGe~dev~~~i~~~~e~~~~~G~~Rv~t~ikId~R~d 79 (92)
T PF01910_consen 14 SVSAYVAEAIEVIKE--------SGLKYEVGPMGTTIEGELDEVMALIKEAHEALFEAGAKRVVTVIKIDDRRD 79 (92)
T ss_dssp HHHHHHHHHHHHHHT--------SSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTTSSEEEEEEEEEEESS
T ss_pred CHHHHHHHHHHHHHH--------cCCceEEcCCccEEEecHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEcCC
Confidence 334445555555533 4677777665432 47788888999999999999999999999998754
No 285
>PLN02494 adenosylhomocysteinase
Probab=22.60 E-value=2.7e+02 Score=31.09 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=30.7
Q ss_pred HHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (628)
Q Consensus 76 F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v 127 (628)
+++.+.+.. +..+.|+.++|+|.| ..++.+..+++.+|++.+
T Consensus 240 ~~d~i~r~t--~i~LaGKtVvViGyG--------~IGr~vA~~aka~Ga~VI 281 (477)
T PLN02494 240 LPDGLMRAT--DVMIAGKVAVICGYG--------DVGKGCAAAMKAAGARVI 281 (477)
T ss_pred HHHHHHHhc--CCccCCCEEEEECCC--------HHHHHHHHHHHHCCCEEE
Confidence 355555432 123789999999976 258899999999999754
No 286
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=22.58 E-value=1e+02 Score=30.42 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=29.4
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCC---CccCCCCEEEEecC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAA---IEYEVGDVLEILPS 274 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~---~~y~~GD~l~i~p~ 274 (628)
+|++.+.+++ +++.++|+.+... ..|+||.++.|.++
T Consensus 5 ~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~ 44 (241)
T cd06214 5 TVAEVVRETA-----DAVSITFDVPEELRDAFRYRPGQFLTLRVP 44 (241)
T ss_pred EEEEEEecCC-----CeEEEEEecCcccCCCCCcCCCCeEEEEee
Confidence 6778888864 6888899887322 58999999999976
No 287
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=22.57 E-value=3e+02 Score=28.33 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCCCcEEee---CCCCC---ccCCC--------CCCeE-EEE-EecCCCCCCChhHHHHHHHHHhc
Q 006868 20 ALDAAERIGRESERRGCPVVVRP---VDDYD---ARCLP--------EEDTV-IFV-VSTTGQGDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~~~---l~~~~---~~~l~--------~~~~v-i~~-~sT~g~G~~p~~~~~F~~~L~~~ 83 (628)
...+|+.|++.+.+.|+.+.... +|.-. ..-+. ....| |++ ++.. -.-.+.....|=+.|...
T Consensus 94 ~~eLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~-p~~~~~~~~~lG~al~~a 172 (277)
T cd07368 94 NEPLAHHIMQHGLEYGIDWAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVD-PFITSWRAHELGRVIGAA 172 (277)
T ss_pred CHHHHHHHHHHHHHcCCCEeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccC-CCCCHHHHHHHHHHHHHH
Confidence 56799999999999998765332 23211 11111 11223 222 3322 233333334444444332
Q ss_pred cCcccccCCcEEEEEecCCcChh
Q 006868 84 SLSKQWLEGVRYAVFGLGDSGYQ 106 (628)
Q Consensus 84 ~~~~~~l~~~~~aVfGlGds~y~ 106 (628)
- . ..+.+.+++|+|+|+.+..
T Consensus 173 i-~-~~~~d~rVliIaSG~LSH~ 193 (277)
T cd07368 173 V-E-AWQGDERVAIIGSGGISHW 193 (277)
T ss_pred H-H-hcCCCCCEEEEEcCcccCC
Confidence 1 0 1245789999999998874
No 288
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=22.52 E-value=2.9e+02 Score=29.39 Aligned_cols=84 Identities=10% Similarity=0.132 Sum_probs=49.6
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEE---eeCC----CCC--ccCCCCCCeEEEEEecCCCCCCChhHHHH
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVV---RPVD----DYD--ARCLPEEDTVIFVVSTTGQGDTPDSMKVF 76 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~---~~l~----~~~--~~~l~~~~~vi~~~sT~g~G~~p~~~~~F 76 (628)
.+++.|+|....+-....++.+.+.+++.|+++.. +... ++. ..++....-+|+++... +++..|
T Consensus 137 ~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~vii~~~~~------~~~~~~ 210 (389)
T cd06352 137 WHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDIKRRSRIIIMCGSS------EDVREL 210 (389)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHhhhcceEEEEECCH------HHHHHH
Confidence 46778888877755667789999999988987542 2222 111 11232333344443322 577888
Q ss_pred HHHHHhccCcccccCCcEEEEEec
Q 006868 77 WRFLLQKSLSKQWLEGVRYAVFGL 100 (628)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~aVfGl 100 (628)
++.+.... +.+..+-++|.
T Consensus 211 l~q~~~~g-----~~~~~~~~i~~ 229 (389)
T cd06352 211 LLAAHDLG-----LTSGDYVFILI 229 (389)
T ss_pred HHHHHHcC-----CCCCcEEEEEE
Confidence 88876654 44445666664
No 289
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=22.47 E-value=1.6e+02 Score=29.23 Aligned_cols=31 Identities=39% Similarity=0.563 Sum_probs=24.9
Q ss_pred ccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (628)
Q Consensus 89 ~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v 127 (628)
.++|++++|.|+|+ ++..+.+.|.+.|++.+
T Consensus 20 ~l~g~~vaIqGfGn--------VG~~~a~~L~~~G~~vV 50 (217)
T cd05211 20 SLEGLTVAVQGLGN--------VGWGLAKKLAEEGGKVL 50 (217)
T ss_pred CcCCCEEEEECCCH--------HHHHHHHHHHHcCCEEE
Confidence 48999999999873 46677778888898766
No 290
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.47 E-value=2.8e+02 Score=28.07 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=42.3
Q ss_pred HHHhHhcCCCcccCCCCcEEEEEecCCCC--ccchhh---hHHHcHHHHHHH-HhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006868 524 WLSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQH---KMLEQSQRIWNL-LLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 524 l~~~~~~~g~l~~~~~~~~~~a~Sr~~~~--k~yVqd---~l~~~~~~v~~~-l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
+-+|..+.|.=. -.+.|||.+.-. +.-|+. ++.+......+. ...+-.|.++|+...+++.+++.+.++
T Consensus 44 i~~~c~~lgI~~-----vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~ 118 (241)
T PRK14842 44 LMDASLEYGLKN-----ISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFA 118 (241)
T ss_pred HHHHHHHcCCCE-----EEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHH
Confidence 344554435432 346778876542 223333 333333332222 344888999999888899999888887
Q ss_pred HHH
Q 006868 598 VSK 600 (628)
Q Consensus 598 l~~ 600 (628)
-..
T Consensus 119 e~~ 121 (241)
T PRK14842 119 MAK 121 (241)
T ss_pred HHH
Confidence 643
No 291
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=22.46 E-value=2.8e+02 Score=24.10 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=41.5
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc---cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA---RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~---~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
+-.++||+ |++..+|+.++..+...|..+....-.+... ..+ ..+.++|+.|..|. . ..+....+.++.
T Consensus 14 ~~i~i~g~--g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iS~~g~--~-~~~~~~~~~a~~ 85 (139)
T cd05013 14 RRIYIFGV--GSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANL-TPGDVVIAISFSGE--T-KETVEAAEIAKE 85 (139)
T ss_pred CEEEEEEc--CchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcC-CCCCEEEEEeCCCC--C-HHHHHHHHHHHH
Confidence 34577776 4589999999999999888766553222111 112 33456666666644 2 445555555543
No 292
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=22.46 E-value=1.6e+02 Score=28.85 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=29.4
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
+|++.+.+|+ ++++++|+.+ ....|+||.++.|..++
T Consensus 2 ~v~~~~~~t~-----~~~~l~l~~~-~~~~~~pGQ~v~l~~~~ 38 (224)
T cd06189 2 KVESIEPLND-----DVYRVRLKPP-APLDFLAGQYLDLLLDD 38 (224)
T ss_pred EEEEEEeCCC-----ceEEEEEecC-CCcccCCCCEEEEEcCC
Confidence 4666677764 6889999877 37899999999999754
No 293
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=22.39 E-value=1.4e+02 Score=23.80 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=33.4
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~ 46 (628)
|+|-+ |++.-.++..+.+.+.+.+.+.|+++++.+..++
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~ 39 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIEDF 39 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTH
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCH
Confidence 46778 8999999999999999999999988888887553
No 294
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.36 E-value=1.5e+02 Score=26.80 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=27.3
Q ss_pred ccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006868 89 WLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 89 ~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
.++++++.|+|.| .+++.+-..|...|++.+.
T Consensus 9 ~l~~~~vlviGaG--------g~ar~v~~~L~~~g~~~i~ 40 (135)
T PF01488_consen 9 DLKGKRVLVIGAG--------GAARAVAAALAALGAKEIT 40 (135)
T ss_dssp TGTTSEEEEESSS--------HHHHHHHHHHHHTTSSEEE
T ss_pred CcCCCEEEEECCH--------HHHHHHHHHHHHcCCCEEE
Confidence 3889999999987 4688999999999999763
No 295
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.22 E-value=7.1e+02 Score=26.25 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCeEee
Q 006868 111 VAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 111 a~~~l~~~L~~lGa~~v~ 128 (628)
.++.+.+.|..+|+.++.
T Consensus 112 sak~va~ll~~~g~d~vi 129 (319)
T PRK04923 112 TAKVAAKMISAMGADRVL 129 (319)
T ss_pred cHHHHHHHHHhcCCCEEE
Confidence 478999999999998874
No 296
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=22.16 E-value=1.6e+02 Score=28.84 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=29.7
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecC--CCCccCCCCEEEEecCCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVS--AAIEYEVGDVLEILPSQD 276 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~--~~~~y~~GD~l~i~p~N~ 276 (628)
+|++.+.+++ ++..++|+.++ ....|+||.++.|..+.+
T Consensus 2 ~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~ 42 (234)
T cd06183 2 KLVSKEDISH-----DTRIFRFELPSPDQVLGLPVGQHVELKAPDD 42 (234)
T ss_pred EeEEeEecCC-----CEEEEEEECCCCCCcCCCCcccEEEEEecCC
Confidence 5667777764 57788888874 247899999999987654
No 297
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=22.11 E-value=41 Score=35.43 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=34.5
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEe---eCCCCCccCCCCCCeEEEEEecC
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVR---PVDDYDARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~---~l~~~~~~~l~~~~~vi~~~sT~ 64 (628)
+|++.|+.-|..| .++|++|++.|....+....+ ++.+.-.+.+.+++.+||+.++=
T Consensus 3 ~m~iaii~~t~~G--~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~d~iIfI~A~G 62 (315)
T PRK05788 3 TMKIAIICATERG--RDLAERLKAKLKADCYTSEKLEYEGFADAFEEAFGCYDALIFIMATG 62 (315)
T ss_pred cceEEEEEECccH--HHHHHHHHHhcccceecchhhccCCHHHHHHHHHhcCCeEEEEEChH
Confidence 4778888877665 889999999886432222111 01111112345788899888864
No 298
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.10 E-value=2.6e+02 Score=28.13 Aligned_cols=74 Identities=11% Similarity=0.006 Sum_probs=44.1
Q ss_pred HHHHhHhcCCCcccCCCCcEEEEEecCCCC--ccchh---hhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006868 523 LWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQ---HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 523 el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~--k~yVq---d~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++-+|..+.|.=. -.+.|||.+.-. +.-|. +++.+......+.+ ..+..|-++|+-..+++.+++++.+
T Consensus 39 ~~~~~c~~~gI~~-----lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~ 113 (233)
T PRK14833 39 EITIWCANHKLEC-----LTLYAFSTENWKRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQ 113 (233)
T ss_pred HHHHHHHHcCCCE-----EEEeecchhhcCcCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeChhhCCHHHHHHHHH
Confidence 3444555545332 346778876542 22333 33333332222233 3488999999988899999999988
Q ss_pred HHHHh
Q 006868 597 IVSKE 601 (628)
Q Consensus 597 il~~~ 601 (628)
+-...
T Consensus 114 ~e~~T 118 (233)
T PRK14833 114 LEEDT 118 (233)
T ss_pred HHHHc
Confidence 87544
No 299
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.81 E-value=74 Score=26.07 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=39.9
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChh-----HHHHHHHHHHHHHHhcCCeE
Q 006868 58 IFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQ-----KFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 58 i~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~-----~f~~a~~~l~~~L~~lGa~~ 126 (628)
++++.|| -+.|..+++|.+.=.... ....-..-.+|||.. |-++|- .+. -...+.+.|+++||+.
T Consensus 6 l~gi~t~--keL~eE~~~Fv~~kA~l~-k~~L~dDde~aIfnI~gT~Sy~V~Fl~~~~-s~eev~~ele~mga~i 76 (88)
T COG4009 6 LLGIATY--KELDEELKDFVRLKAHLA-KVDLNDDDELAIFNIEGTSSYYVVFLEEVE-SEEEVERELEDMGAEI 76 (88)
T ss_pred hhhheeH--HhhhHHHHHHHHHHHHhc-ccccCCCCcEEEEEecCceeEEEEEEeccC-CHHHHHHHHHHhCchh
Confidence 3456677 348999999987421111 111223468888887 555663 222 3477888889999874
No 300
>PRK08051 fre FMN reductase; Validated
Probab=21.79 E-value=1.7e+02 Score=28.89 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.9
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 274 (628)
+|++...+++ ++++|+|..+ ....|+||.++.|..+
T Consensus 6 ~v~~i~~~~~-----~~~~l~l~~~-~~~~~~pGQ~v~l~~~ 41 (232)
T PRK08051 6 KVTSVEAITD-----TVYRVRLVPE-APFSFRAGQYLMVVMG 41 (232)
T ss_pred EEEEEecCCC-----CeEEEEEecC-CCCccCCCCEEEEEcC
Confidence 7777877764 6889999865 5689999999999853
No 301
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=21.73 E-value=94 Score=33.12 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=43.6
Q ss_pred cCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCCC------CCCCC
Q 006868 400 VPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR------PPPSV 473 (628)
Q Consensus 400 lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~l------p~~~~ 473 (628)
.|...+|+|-+.-.+ ++==| .-.|--|+||+.|+. |++|.+-...|.-+. .-..+
T Consensus 227 ~pYva~RPFRVNAGa------VHaYv-----------~~pg~kT~YLSEL~s--G~~VlvVd~~G~tR~~~VGRvKIE~R 287 (354)
T PF01959_consen 227 SPYVASRPFRVNAGA------VHAYV-----------LMPGGKTRYLSELRS--GDEVLVVDADGRTRTAIVGRVKIERR 287 (354)
T ss_pred CCCCCCCCceEecCc------ceeEE-----------EcCCCceeehhhhcC--CCEEEEEeCCCCEEEEEeeEEEEeec
Confidence 355689999886544 33222 123566999999999 999999888876321 12568
Q ss_pred CEEEEeCCC
Q 006868 474 PLILIGPGT 482 (628)
Q Consensus 474 piimIa~Gt 482 (628)
|+++|=+=+
T Consensus 288 PLllIeA~~ 296 (354)
T PF01959_consen 288 PLLLIEAEA 296 (354)
T ss_pred ceEEEEEEe
Confidence 999986544
No 302
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=21.71 E-value=3.1e+02 Score=24.26 Aligned_cols=87 Identities=16% Similarity=0.225 Sum_probs=49.1
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-------cCCCCCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA-------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-------~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L 80 (628)
+++|+|-...|+-....+.+...+...+..+.++..+.... ..+..+.-.|+++. |+| +....+..+
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~G--GDG----Tl~~vv~~l 74 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVG--GDG----TLNEVVNGL 74 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEE--SHH----HHHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEc--Ccc----HHHHHHHHH
Confidence 46788877776655444788888888888777777655221 11223312444444 676 445555555
Q ss_pred HhccCcccccCCcEEEEEecCCcC
Q 006868 81 LQKSLSKQWLEGVRYAVFGLGDSG 104 (628)
Q Consensus 81 ~~~~~~~~~l~~~~~aVfGlGds~ 104 (628)
..... .....++|+-+|..+
T Consensus 75 ~~~~~----~~~~~l~iiP~GT~N 94 (130)
T PF00781_consen 75 MGSDR----EDKPPLGIIPAGTGN 94 (130)
T ss_dssp CTSTS----SS--EEEEEE-SSS-
T ss_pred hhcCC----CccceEEEecCCChh
Confidence 43321 114589998888664
No 303
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.37 E-value=2.1e+02 Score=30.04 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEe
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVR 41 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~ 41 (628)
|++|.|+|-...-.+..+|++|.+.|.+.|+.+.+.
T Consensus 1 m~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~ 36 (305)
T PRK02649 1 MPKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRA 36 (305)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 567999999888889999999999999999877654
No 304
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=21.24 E-value=1.6e+02 Score=29.52 Aligned_cols=38 Identities=8% Similarity=0.223 Sum_probs=30.9
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQD 276 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~ 276 (628)
+|++.+.+|+ +++.++|+.+ ....|+||+++.|..++.
T Consensus 8 ~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 8 KIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred EEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 7888888875 6889999855 568899999999986643
No 305
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=21.11 E-value=2.6e+02 Score=32.66 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCCCcEEeeC--CCCCccCC-CCCCeEEEEEecCCCC--CCCh-------hHHHHHHHHHhccCcc
Q 006868 20 ALDAAERIGRESERRGCPVVVRPV--DDYDARCL-PEEDTVIFVVSTTGQG--DTPD-------SMKVFWRFLLQKSLSK 87 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~~~l--~~~~~~~l-~~~~~vi~~~sT~g~G--~~p~-------~~~~F~~~L~~~~~~~ 87 (628)
.+.+.+...+.+.+.|+++.+-.. .+++..++ ..++.||+.+.+...- ..|. ....|++..... .
T Consensus 242 ~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~---~ 318 (652)
T PRK12814 242 PESVIDADIAPLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALG---T 318 (652)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCcccCccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcC---C
Confidence 344555566667777765433221 11122222 2588898888776211 1121 233444433211 1
Q ss_pred cccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEe
Q 006868 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAV 127 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v 127 (628)
....++++.|+|.|+.... +...+..+|++.+
T Consensus 319 ~~~~gk~VvVIGgG~~a~e--------~A~~l~~~Ga~~V 350 (652)
T PRK12814 319 ALHPGKKVVVIGGGNTAID--------AARTALRLGAESV 350 (652)
T ss_pred cccCCCeEEEECCCHHHHH--------HHHHHHHcCCCeE
Confidence 2356899999999966442 3335567788654
No 306
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.10 E-value=2.6e+02 Score=22.28 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHHHHhC-CCCcEEeeCCCCC----ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006868 17 TGNALDAAERIGRESERR-GCPVVVRPVDDYD----ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 17 tGnte~~A~~l~~~l~~~-g~~v~~~~l~~~~----~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~ 83 (628)
.|++..+|+.+...+.+. |.++....-.... ...+.+.+ ++++.|..|. . ++.....+.+++.
T Consensus 6 ~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~iS~sg~--t-~~~~~~~~~a~~~ 73 (87)
T cd04795 6 IGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGD-VVIALSYSGR--T-EELLAALEIAKEL 73 (87)
T ss_pred cCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCC-EEEEEECCCC--C-HHHHHHHHHHHHc
Confidence 468999999999999888 8877665543332 12233444 4444444433 3 4455666666543
No 307
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.99 E-value=1.1e+02 Score=31.83 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=31.0
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCC
Q 006868 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD 44 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~ 44 (628)
|+|+++--...|.++..+..+++.|.+.|++|.++...
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~ 38 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSS 38 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecC
Confidence 35666656778999999999999999999998877643
No 308
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.89 E-value=3e+02 Score=28.02 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=37.1
Q ss_pred EEEEEecCCCC--ccchh---hhHHHcHHHHHH-HHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Q 006868 542 FYVAFSRKQPQ--KVYVQ---HKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEEIVSKE 601 (628)
Q Consensus 542 ~~~a~Sr~~~~--k~yVq---d~l~~~~~~v~~-~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~ 601 (628)
...|||.+.-. +.-|. +++.+......+ +...+..|-++|+-..+++++++++.++-...
T Consensus 71 TvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T 136 (250)
T PRK14840 71 TLFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSAT 136 (250)
T ss_pred EEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHh
Confidence 46677776542 22333 333443333222 33448889999998888888888888876543
No 309
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=20.86 E-value=1.6e+02 Score=28.44 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=36.5
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEe
Q 006868 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVS 62 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~s 62 (628)
+|.|+ ...|+-...+..+.+.+++.|+.+++...++ ..++.+++.+|+..+
T Consensus 2 ~i~vl--~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~--~~~l~~~d~iii~GG 52 (200)
T PRK13527 2 KIGVL--ALQGDVEEHIDALKRALDELGIDGEVVEVRR--PGDLPDCDALIIPGG 52 (200)
T ss_pred EEEEE--EECCccHHHHHHHHHHHHhcCCCeEEEEeCC--hHHhccCCEEEECCC
Confidence 45554 3446777788888888888998888888765 346778887776553
No 310
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=20.86 E-value=45 Score=34.54 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=36.1
Q ss_pred cCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccC---CCCcccCCCccccccHHHHHHhccccCc
Q 006868 263 YEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKN---YLPDIHKNTTEVPIKLRTFVELTMDVTS 332 (628)
Q Consensus 263 y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~---~~p~~~~~~~~~~~tl~~~l~~~~Dl~~ 332 (628)
++|||++-..+.|...--. .--.+.+..+.+...-+.. ++ .-.|||...+|+.|+||..
T Consensus 99 fk~Gd~VIp~~a~lGtW~t----~~v~~e~~Li~vd~~~pl~~AAT~-------~VNP~TAyrmL~dfv~L~~ 160 (354)
T KOG0025|consen 99 FKPGDWVIPLSANLGTWRT----EAVFSESDLIKVDKDIPLASAATL-------SVNPCTAYRMLKDFVQLNK 160 (354)
T ss_pred cCCCCeEeecCCCCcccee----eEeecccceEEcCCcCChhhhhee-------ccCchHHHHHHHHHHhcCC
Confidence 9999999999998552111 0112344455443211110 11 1158999999999999984
No 311
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=20.83 E-value=3.4e+02 Score=29.73 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=41.9
Q ss_pred CCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHH
Q 006868 36 CPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKL 115 (628)
Q Consensus 36 ~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l 115 (628)
+.+-++++++.....+.+. -||.| +..++.+.+.. +..+.|++++|+|.|. .++.+
T Consensus 155 L~~Pvi~vnds~~K~~fDn--------~yg~g------~s~~~~i~r~t--~~~l~Gk~VvViG~G~--------IG~~v 210 (406)
T TIGR00936 155 LKFPAINVNDAYTKSLFDN--------RYGTG------QSTIDGILRAT--NLLIAGKTVVVAGYGW--------CGKGI 210 (406)
T ss_pred CCCcEEEecchhhchhhhc--------ccccc------hhHHHHHHHhc--CCCCCcCEEEEECCCH--------HHHHH
Confidence 4555777776544443222 24444 22334443321 1137899999999773 68889
Q ss_pred HHHHHhcCCeEe
Q 006868 116 DNRLLDLGATAV 127 (628)
Q Consensus 116 ~~~L~~lGa~~v 127 (628)
...++.+|++.+
T Consensus 211 A~~ak~~Ga~Vi 222 (406)
T TIGR00936 211 AMRARGMGARVI 222 (406)
T ss_pred HHHHhhCcCEEE
Confidence 999999999754
No 312
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.75 E-value=4e+02 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=17.2
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHH
Q 006868 574 KASIYVAGSATKMPSDVWSTFEEIVS 599 (628)
Q Consensus 574 ~~~iyvCG~~~~M~~~v~~~L~~il~ 599 (628)
+..|-++|+...+++++++++.++-.
T Consensus 111 ~irv~~iG~~~~lp~~~~~~~~~~e~ 136 (256)
T PRK14828 111 RWRVRHVGSLDLLPAPSANRLKEAEE 136 (256)
T ss_pred CeEEEEECChhhCCHHHHHHHHHHHH
Confidence 44677777766677777776666543
No 313
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.49 E-value=3.4e+02 Score=24.34 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=37.9
Q ss_pred EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC---ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006868 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 10 ~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~---~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
.+-+|+..|.++.+|.++.+.. ++++......++- ...+.+.+.+|+++ .. |+-.+.+.+..+++++
T Consensus 18 ~~G~G~s~~~a~e~~~kl~e~~---~i~~~~~~~~e~~hg~~~~~~~~~~vi~is-~~--g~t~~~~~~~~~~~~~ 87 (153)
T cd05009 18 VLGRGPNYGTALEGALKLKETS---YIHAEAYSAGEFKHGPIALVDEGTPVIFLA-PE--DRLEEKLESLIKEVKA 87 (153)
T ss_pred EEcCCCCHHHHHHHHHHHHHHH---hhcceeccHHHhccChhhhccCCCcEEEEe-cC--ChhHHHHHHHHHHHHH
Confidence 3446667788888887777653 2456666665543 22233444555554 33 4334456667776654
No 314
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=20.43 E-value=2.8e+02 Score=26.29 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=31.1
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCC---CCcEEeeCCCCCc-cCCCCCCeEEEEEec
Q 006868 9 LLILYASQTGNALDAAERIGRESERRG---CPVVVRPVDDYDA-RCLPEEDTVIFVVST 63 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g---~~v~~~~l~~~~~-~~l~~~~~vi~~~sT 63 (628)
|+|+-.+..-. +..+.+.+++.| +++.+++..+-+. .++..++.+|+..+-
T Consensus 2 i~il~~~~~~~----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~ 56 (188)
T cd01741 2 ILILQHDTPEG----PGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGP 56 (188)
T ss_pred EEEEECCCCCC----cchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCC
Confidence 55665555433 344455555566 6788888766443 467788888777553
No 315
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.37 E-value=9.9e+02 Score=24.95 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=71.5
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC-CCccCC----------CCCCeEEEEEecCC---------
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD-YDARCL----------PEEDTVIFVVSTTG--------- 65 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~-~~~~~l----------~~~~~vi~~~sT~g--------- 65 (628)
..++.|+.....-.+..+++...+.+++.|+.++++.+.. .+.+++ .+-+.+++-.|--.
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~ 111 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLH 111 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHh
Confidence 3568888888888999999999999999999999999853 222222 12245555444220
Q ss_pred ----------------------C-CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhc
Q 006868 66 ----------------------Q-GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (628)
Q Consensus 66 ----------------------~-G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~l 122 (628)
+ +-.|-+...-++.|+..+. .+.|+++.|+|-+ +-.++-+...|..-
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~vvVIGrS-------~iVGkPla~lL~~~ 181 (297)
T PRK14186 112 AIDPDKDADGLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQI---DIAGKKAVVVGRS-------ILVGKPLALMLLAA 181 (297)
T ss_pred ccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHHHHHC
Confidence 0 1124445555555544432 3778888888743 22467777777777
Q ss_pred CCeE
Q 006868 123 GATA 126 (628)
Q Consensus 123 Ga~~ 126 (628)
||+.
T Consensus 182 ~atV 185 (297)
T PRK14186 182 NATV 185 (297)
T ss_pred CCEE
Confidence 7765
No 316
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=20.30 E-value=1.2e+02 Score=34.16 Aligned_cols=49 Identities=10% Similarity=0.012 Sum_probs=42.5
Q ss_pred CCcEEEEEECCcc-hHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCC
Q 006868 6 RNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDARCLPEE 54 (628)
Q Consensus 6 ~~~v~I~Y~S~tG-nte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~ 54 (628)
-+.+.|+-+|.+| +...++++|.+.+.+.|.+..++-+...++..|.+.
T Consensus 281 A~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF 330 (496)
T TIGR00272 281 AGCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANF 330 (496)
T ss_pred CCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC
Confidence 4678999999988 578899999999999999999999999887777644
No 317
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=20.20 E-value=2e+02 Score=30.29 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=31.1
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecC-CCCccCCCCEEEEecCC
Q 006868 233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 275 (628)
+|++.+.+++ +++.++|+.++ ..+.|+||.++.|..++
T Consensus 106 ~V~~~~~~~~-----d~~~l~l~~~~~~~~~~~pGQfv~l~~~~ 144 (339)
T PRK07609 106 RVASLERVAG-----DVMRLKLRLPATERLQYLAGQYIEFILKD 144 (339)
T ss_pred EEEEEEcCCC-----cEEEEEEEcCCCCCCccCCCCeEEEECCC
Confidence 8888888875 68899999873 35799999999998764
No 318
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.16 E-value=9.8e+02 Score=24.81 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=76.6
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-CccCC-------C---CCCeEEEEEecC----------
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL-------P---EEDTVIFVVSTT---------- 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~~~l-------~---~~~~vi~~~sT~---------- 64 (628)
..++.|+.....-.+..+++...+.+++.|+.++++.+.+- +.+++ . +-+.+++--|--
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~ 111 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIE 111 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 45788888888889999999999999999999999988642 21111 1 223444444422
Q ss_pred ---------------------C-CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhc
Q 006868 65 ---------------------G-QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDL 122 (628)
Q Consensus 65 ---------------------g-~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~l 122 (628)
| .+-.|-+...-++.|+..+. .+.|+++.|+|-|.. .++-+...|...
T Consensus 112 ~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~vvViGrs~i-------VGkPla~lL~~~ 181 (285)
T PRK14189 112 AIAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIGI---PLRGAHAVVIGRSNI-------VGKPMAMLLLQA 181 (285)
T ss_pred hcCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcCC---CCCCCEEEEECCCCc-------cHHHHHHHHHHC
Confidence 0 11235556666666655543 388999999997633 478888888888
Q ss_pred CCeEe
Q 006868 123 GATAV 127 (628)
Q Consensus 123 Ga~~v 127 (628)
||+..
T Consensus 182 ~atVt 186 (285)
T PRK14189 182 GATVT 186 (285)
T ss_pred CCEEE
Confidence 98764
No 319
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=20.08 E-value=5.9e+02 Score=26.21 Aligned_cols=21 Identities=0% Similarity=-0.122 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhCCCCcEE
Q 006868 20 ALDAAERIGRESERRGCPVVV 40 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~ 40 (628)
...+|+.|.+.+.+.|+.+..
T Consensus 97 ~~~LA~~i~~~~~~~g~d~~~ 117 (276)
T cd07949 97 DPELSWHLIESLVEDEFDITT 117 (276)
T ss_pred CHHHHHHHHHHHHHcCCCeec
Confidence 578999999999999987543
No 320
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=20.07 E-value=9e+02 Score=25.28 Aligned_cols=114 Identities=16% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC----C---CCCCeEEEEEecCCCCCCChhHHHHHH
Q 006868 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARC----L---PEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~----l---~~~~~vi~~~sT~g~G~~p~~~~~F~~ 78 (628)
|+++.|++|+. ...+|+.|++.+. ++..-+++..|.-.+ + ....-+.++-|.. |..-++..+.+-
T Consensus 1 ~~~i~lf~g~s---hp~La~~I~~~lg---i~l~~v~~kkf~nge~~v~i~esvR~~dV~iiqsgs--g~ind~lmELLI 72 (316)
T KOG1448|consen 1 MKNIKLFSGDS---HPELAERIAARLG---IELGKVNLKKFSNGETSVQIGESVRGEDVYIIQSGS--GPINDNLMELLI 72 (316)
T ss_pred CCceEEEcCCC---CHHHHHHHHHHhC---CCcceeeeEEccCCcEEEecccccccCcEEEeccCC--CcchHHHHHHHH
Confidence 56788888766 4889999988764 443333333332111 1 1333466666655 445566555443
Q ss_pred HHHhccCcccccCCcEEEE---EecCCcCh---hHHHHHHHHHHHHHHhcCCeEeecc
Q 006868 79 FLLQKSLSKQWLEGVRYAV---FGLGDSGY---QKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 79 ~L~~~~~~~~~l~~~~~aV---fGlGds~y---~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
.+...+ . ....+--+| |+.+-..- .|--.++|.+.+.|...|+..+.-+
T Consensus 73 ~I~ac~--~-asa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~aG~dhvItm 127 (316)
T KOG1448|consen 73 MINACK--R-ASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSAGADHVITM 127 (316)
T ss_pred HHHhcc--h-hhhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhccCCceEEEe
Confidence 332221 1 011222222 55443221 2456678999999999999887654
Done!