Query 006869
Match_columns 628
No_of_seqs 308 out of 2031
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 15:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1148 Glutaminyl-tRNA synthe 100.0 9E-177 2E-181 1410.5 42.9 594 7-628 1-600 (764)
2 PLN02859 glutamine-tRNA ligase 100.0 2E-172 5E-177 1450.6 60.8 616 7-628 3-619 (788)
3 PTZ00437 glutaminyl-tRNA synth 100.0 8E-108 2E-112 900.3 38.3 382 231-628 19-400 (574)
4 PRK05347 glutaminyl-tRNA synth 100.0 1E-103 2E-108 869.0 38.1 365 261-628 15-386 (554)
5 PLN03233 putative glutamate-tR 100.0 1E-103 2E-108 866.6 36.1 356 270-628 7-365 (523)
6 PRK14703 glutaminyl-tRNA synth 100.0 8E-101 2E-105 876.3 38.4 365 261-628 17-390 (771)
7 PTZ00402 glutamyl-tRNA synthet 100.0 7E-101 2E-105 851.4 35.9 356 270-628 48-404 (601)
8 TIGR00440 glnS glutaminyl-tRNA 100.0 5E-101 1E-105 845.9 33.8 350 275-628 1-356 (522)
9 PRK04156 gltX glutamyl-tRNA sy 100.0 9.1E-98 2E-102 828.0 36.7 351 272-628 99-451 (567)
10 PLN02907 glutamate-tRNA ligase 100.0 6.1E-98 1E-102 854.3 35.8 353 272-628 211-565 (722)
11 TIGR00463 gltX_arch glutamyl-t 100.0 1.1E-95 2E-100 810.4 36.1 352 272-628 91-443 (560)
12 COG0008 GlnS Glutamyl- and glu 100.0 3.1E-82 6.8E-87 692.6 19.7 341 275-627 10-362 (472)
13 KOG1147 Glutamyl-tRNA syntheta 100.0 9E-81 2E-85 664.2 26.4 355 270-628 196-552 (712)
14 PLN02627 glutamyl-tRNA synthet 100.0 4E-78 8.6E-83 664.5 22.2 322 264-612 35-385 (535)
15 PRK12410 glutamylglutaminyl-tR 100.0 2.2E-76 4.8E-81 640.6 23.0 289 276-597 1-304 (433)
16 PF00749 tRNA-synt_1c: tRNA sy 100.0 1.3E-76 2.8E-81 624.4 15.9 306 274-595 1-314 (314)
17 PRK12558 glutamyl-tRNA synthet 100.0 2.4E-75 5.2E-80 635.1 23.3 308 274-611 2-330 (445)
18 KOG1149 Glutamyl-tRNA syntheta 100.0 1.9E-75 4.1E-80 612.9 20.2 298 273-597 32-352 (524)
19 PRK14895 gltX glutamyl-tRNA sy 100.0 1.6E-73 3.5E-78 627.1 21.7 308 272-611 2-330 (513)
20 cd00807 GlnRS_core catalytic c 100.0 1.5E-72 3.2E-77 567.3 23.8 238 274-583 1-238 (238)
21 PRK01406 gltX glutamyl-tRNA sy 100.0 1.5E-72 3.2E-77 621.9 25.5 310 272-609 2-339 (476)
22 PRK05710 glutamyl-Q tRNA(Asp) 100.0 1.2E-71 2.5E-76 579.5 25.9 272 272-590 3-298 (299)
23 TIGR00464 gltX_bact glutamyl-t 100.0 3.3E-71 7.2E-76 610.7 25.5 311 274-611 1-332 (470)
24 cd09287 GluRS_non_core catalyt 100.0 5.2E-70 1.1E-74 550.5 23.5 238 274-583 1-240 (240)
25 TIGR03838 queuosine_YadB gluta 100.0 1.1E-69 2.4E-74 558.8 22.2 261 275-572 1-271 (272)
26 cd00418 GlxRS_core catalytic c 100.0 5.8E-64 1.3E-68 504.4 17.9 222 274-597 1-224 (230)
27 cd00808 GluRS_core catalytic c 100.0 4.5E-60 9.8E-65 479.4 17.7 223 274-597 1-233 (239)
28 PF04558 tRNA_synt_1c_R1: Glut 100.0 1.5E-50 3.2E-55 388.1 14.6 163 7-169 1-164 (164)
29 COG0215 CysS Cysteinyl-tRNA sy 99.9 8.5E-28 1.8E-32 260.4 13.9 251 280-572 29-314 (464)
30 PF01406 tRNA-synt_1e: tRNA sy 99.9 7.4E-27 1.6E-31 242.2 10.2 250 280-572 15-298 (300)
31 TIGR00435 cysS cysteinyl-tRNA 99.9 1.6E-24 3.5E-29 240.0 18.8 253 278-573 26-312 (465)
32 PRK00260 cysS cysteinyl-tRNA s 99.9 5.8E-24 1.3E-28 235.7 20.6 255 272-573 21-313 (463)
33 PLN02946 cysteine-tRNA ligase 99.9 7.7E-25 1.7E-29 244.8 12.7 252 280-573 87-370 (557)
34 PRK14534 cysS cysteinyl-tRNA s 99.9 2.9E-24 6.4E-29 236.8 15.9 249 280-573 28-327 (481)
35 PRK14536 cysS cysteinyl-tRNA s 99.9 7.1E-24 1.5E-28 234.6 18.9 249 280-574 30-328 (490)
36 PRK12418 cysteinyl-tRNA synthe 99.9 3.5E-24 7.7E-29 230.9 14.0 257 279-574 15-310 (384)
37 PRK14535 cysS cysteinyl-tRNA s 99.9 3.7E-23 8E-28 233.1 19.0 246 280-572 255-554 (699)
38 TIGR03447 mycothiol_MshC cyste 99.9 4.8E-24 1E-28 231.0 10.3 255 279-572 42-335 (411)
39 PTZ00399 cysteinyl-tRNA-synthe 99.9 3.9E-22 8.6E-27 228.3 15.3 262 276-573 61-362 (651)
40 KOG2007 Cysteinyl-tRNA synthet 99.9 2.3E-22 4.9E-27 216.2 12.1 260 259-560 39-340 (586)
41 cd00671 ArgRS_core catalytic c 99.8 2.9E-18 6.3E-23 171.8 15.0 183 276-515 3-212 (212)
42 PF04557 tRNA_synt_1c_R2: Glut 99.6 3.6E-17 7.9E-22 140.7 2.3 82 170-267 1-84 (84)
43 PRK01611 argS arginyl-tRNA syn 99.6 1.1E-15 2.4E-20 171.7 13.5 211 272-555 110-369 (507)
44 PRK11893 methionyl-tRNA synthe 99.6 6.1E-14 1.3E-18 157.3 19.6 270 275-574 4-348 (511)
45 cd00668 Ile_Leu_Val_MetRS_core 99.5 9E-13 2E-17 139.3 17.2 242 278-556 6-304 (312)
46 cd00802 class_I_aaRS_core cata 99.4 2.1E-13 4.6E-18 128.1 8.8 133 276-514 1-143 (143)
47 cd00814 MetRS_core catalytic c 99.3 4.2E-11 9.2E-16 127.2 19.0 94 275-368 3-116 (319)
48 cd00672 CysRS_core catalytic c 99.3 1.6E-11 3.4E-16 123.6 12.7 53 491-559 155-208 (213)
49 TIGR00398 metG methionyl-tRNA 99.3 6.3E-11 1.4E-15 134.0 15.9 93 275-367 2-114 (530)
50 PRK12268 methionyl-tRNA synthe 99.2 1.7E-10 3.8E-15 131.2 15.2 93 275-367 6-119 (556)
51 cd00818 IleRS_core catalytic c 99.2 4.1E-10 8.8E-15 120.8 15.9 91 280-370 9-138 (338)
52 PRK00750 lysK lysyl-tRNA synth 99.2 2.7E-10 5.9E-15 128.3 14.5 75 464-554 232-309 (510)
53 cd00812 LeuRS_core catalytic c 99.2 2E-10 4.3E-15 121.9 12.5 91 276-367 4-117 (314)
54 PRK12267 methionyl-tRNA synthe 99.1 4.4E-10 9.5E-15 130.2 13.9 94 275-368 7-120 (648)
55 PRK00133 metG methionyl-tRNA s 99.1 3.6E-09 7.9E-14 123.1 19.9 93 275-367 5-117 (673)
56 cd00674 LysRS_core_class_I cat 99.1 3.8E-09 8.3E-14 113.7 17.9 235 273-556 19-306 (353)
57 PLN02224 methionine-tRNA ligas 99.1 1.3E-09 2.8E-14 125.0 14.4 93 275-367 72-184 (616)
58 PRK12451 arginyl-tRNA syntheta 99.0 3E-09 6.5E-14 121.3 15.0 105 406-541 275-388 (562)
59 cd00817 ValRS_core catalytic c 99.0 1.2E-09 2.5E-14 119.1 9.6 92 277-368 6-135 (382)
60 PF09334 tRNA-synt_1g: tRNA sy 98.9 2.8E-08 6.1E-13 108.7 16.8 92 276-367 3-114 (391)
61 TIGR00456 argS arginyl-tRNA sy 98.8 5.8E-08 1.3E-12 111.0 16.8 221 274-517 113-380 (566)
62 cd00806 TrpRS_core catalytic c 98.8 2.7E-08 5.8E-13 104.3 12.5 171 282-515 7-197 (280)
63 COG0143 MetG Methionyl-tRNA sy 98.8 4.2E-08 9.1E-13 111.0 13.3 93 275-367 8-120 (558)
64 PLN02610 probable methionyl-tR 98.8 5.6E-08 1.2E-12 114.8 14.6 93 275-367 20-133 (801)
65 COG0018 ArgS Arginyl-tRNA synt 98.8 1.3E-07 2.9E-12 107.7 16.2 238 272-541 116-400 (577)
66 PLN02286 arginine-tRNA ligase 98.8 1.2E-07 2.7E-12 108.5 15.9 231 273-541 117-395 (576)
67 TIGR00467 lysS_arch lysyl-tRNA 98.7 5.4E-07 1.2E-11 101.6 17.3 95 465-577 224-324 (515)
68 PF00750 tRNA-synt_1d: tRNA sy 98.6 3.5E-07 7.7E-12 98.9 12.8 282 271-589 18-353 (354)
69 TIGR00233 trpS tryptophanyl-tR 98.2 1.7E-05 3.8E-10 85.0 13.0 170 282-516 10-199 (328)
70 PF01921 tRNA-synt_1f: tRNA sy 98.1 2.3E-05 5.1E-10 84.4 12.8 240 262-554 10-311 (360)
71 COG0180 TrpS Tryptophanyl-tRNA 98.1 2.1E-05 4.5E-10 83.4 11.6 176 282-519 13-208 (314)
72 PRK12285 tryptophanyl-tRNA syn 98.0 5.6E-05 1.2E-09 82.3 13.9 187 261-516 54-258 (368)
73 KOG0436 Methionyl-tRNA synthet 98.0 1.3E-05 2.8E-10 86.5 7.3 93 489-597 323-416 (578)
74 PRK08560 tyrosyl-tRNA syntheta 97.8 0.00026 5.6E-09 76.1 14.2 189 260-514 17-219 (329)
75 cd00805 TyrRS_core catalytic c 97.8 0.00045 9.8E-09 72.2 14.4 221 282-578 8-251 (269)
76 PRK12556 tryptophanyl-tRNA syn 97.8 0.00026 5.7E-09 76.1 12.9 88 282-378 11-108 (332)
77 PRK00390 leuS leucyl-tRNA synt 97.8 4.3E-05 9.3E-10 91.1 7.6 94 275-368 35-150 (805)
78 TIGR00396 leuS_bact leucyl-tRN 97.7 5.7E-05 1.2E-09 90.4 8.1 92 275-368 32-147 (842)
79 COG2511 GatE Archaeal Glu-tRNA 97.7 0.001 2.2E-08 74.0 15.9 164 11-184 458-630 (631)
80 PRK13354 tyrosyl-tRNA syntheta 97.6 0.0021 4.5E-08 71.2 17.1 81 466-555 186-270 (410)
81 COG1384 LysS Lysyl-tRNA synthe 97.6 0.00055 1.2E-08 76.3 12.1 74 465-554 228-306 (521)
82 PRK12282 tryptophanyl-tRNA syn 97.6 0.00019 4.1E-09 77.2 8.0 86 282-376 10-104 (333)
83 PRK13208 valS valyl-tRNA synth 97.5 0.00019 4.2E-09 85.6 7.8 94 275-368 40-169 (800)
84 PRK05912 tyrosyl-tRNA syntheta 97.4 0.0037 8.1E-08 69.2 16.4 88 261-352 22-130 (408)
85 cd00395 Tyr_Trp_RS_core cataly 97.4 0.00049 1.1E-08 72.1 9.0 174 282-517 7-206 (273)
86 PLN02563 aminoacyl-tRNA ligase 97.4 0.00036 7.7E-09 84.5 8.9 94 275-368 113-229 (963)
87 PTZ00419 valyl-tRNA synthetase 97.3 0.0004 8.7E-09 84.7 8.0 95 275-369 63-196 (995)
88 TIGR00392 ileS isoleucyl-tRNA 97.3 0.00048 1E-08 82.9 8.2 95 275-369 39-172 (861)
89 TIGR00134 gatE_arch glutamyl-t 97.3 0.0065 1.4E-07 70.2 16.7 160 10-179 449-617 (620)
90 TIGR00422 valS valyl-tRNA synt 97.3 0.00061 1.3E-08 82.0 8.2 92 277-368 38-167 (861)
91 PLN02486 aminoacyl-tRNA ligase 97.3 0.0032 6.9E-08 69.0 13.0 78 282-359 81-169 (383)
92 PRK14900 valS valyl-tRNA synth 97.3 0.00051 1.1E-08 84.1 7.5 94 275-368 51-183 (1052)
93 PRK05743 ileS isoleucyl-tRNA s 97.2 0.00072 1.6E-08 81.8 8.0 94 275-368 52-180 (912)
94 PTZ00126 tyrosyl-tRNA syntheta 97.2 0.0077 1.7E-07 66.1 15.2 90 260-351 53-154 (383)
95 COG0495 LeuS Leucyl-tRNA synth 97.2 0.0004 8.6E-09 82.0 5.5 92 275-368 37-152 (814)
96 PLN02843 isoleucyl-tRNA synthe 97.2 0.00073 1.6E-08 82.2 7.9 93 276-368 36-164 (974)
97 PRK04028 glutamyl-tRNA(Gln) am 97.2 0.0089 1.9E-07 69.2 15.9 165 10-184 456-629 (630)
98 PF00579 tRNA-synt_1b: tRNA sy 97.2 0.00017 3.6E-09 76.0 1.8 177 282-519 13-208 (292)
99 PF00133 tRNA-synt_1: tRNA syn 97.1 0.00089 1.9E-08 77.5 7.8 92 277-368 28-158 (601)
100 PLN02943 aminoacyl-tRNA ligase 97.1 0.0012 2.6E-08 80.3 9.0 95 275-369 91-223 (958)
101 PRK05729 valS valyl-tRNA synth 97.1 0.00086 1.9E-08 80.8 7.8 89 280-368 44-170 (874)
102 PRK12283 tryptophanyl-tRNA syn 97.1 0.0015 3.2E-08 71.7 7.9 87 282-377 10-105 (398)
103 TIGR00395 leuS_arch leucyl-tRN 97.0 0.0011 2.4E-08 80.4 7.2 65 494-574 604-669 (938)
104 PLN02381 valyl-tRNA synthetase 97.0 0.0015 3.1E-08 80.3 8.0 95 275-369 131-264 (1066)
105 PRK06039 ileS isoleucyl-tRNA s 97.0 0.0015 3.2E-08 79.7 8.1 94 276-369 45-177 (975)
106 PRK05477 gatB aspartyl/glutamy 97.0 0.017 3.7E-07 65.0 15.4 161 10-178 299-473 (474)
107 PTZ00427 isoleucine-tRNA ligas 97.0 0.0016 3.5E-08 80.5 8.0 91 278-368 108-237 (1205)
108 PRK00927 tryptophanyl-tRNA syn 96.9 0.0024 5.2E-08 68.8 8.1 74 282-357 9-90 (333)
109 PRK12284 tryptophanyl-tRNA syn 96.9 0.0066 1.4E-07 67.2 10.9 87 282-377 10-106 (431)
110 PLN02882 aminoacyl-tRNA ligase 96.8 0.0021 4.6E-08 79.4 7.6 89 280-368 46-173 (1159)
111 PLN02751 glutamyl-tRNA(Gln) am 96.8 0.037 8.1E-07 63.1 16.5 161 10-179 367-541 (544)
112 PRK14703 glutaminyl-tRNA synth 96.7 0.033 7.1E-07 66.1 15.7 159 13-179 600-770 (771)
113 COG0525 ValS Valyl-tRNA synthe 96.6 0.0049 1.1E-07 73.2 8.3 91 278-368 39-167 (877)
114 PRK13804 ileS isoleucyl-tRNA s 96.6 0.0043 9.3E-08 75.6 8.1 94 275-368 57-188 (961)
115 TIGR00133 gatB glutamyl-tRNA(G 96.5 0.065 1.4E-06 60.5 15.7 159 12-178 304-476 (478)
116 KOG0435 Leucyl-tRNA synthetase 96.5 0.0026 5.6E-08 72.6 4.4 95 272-369 57-176 (876)
117 PTZ00348 tyrosyl-tRNA syntheta 96.1 0.026 5.6E-07 66.1 10.3 90 260-350 19-119 (682)
118 COG0008 GlnS Glutamyl- and glu 95.9 0.0036 7.8E-08 70.3 2.1 111 473-597 206-322 (472)
119 PLN02959 aminoacyl-tRNA ligase 95.5 0.03 6.6E-07 69.1 7.9 58 499-572 708-765 (1084)
120 TIGR00395 leuS_arch leucyl-tRN 95.5 0.034 7.4E-07 67.8 8.0 23 345-367 396-419 (938)
121 KOG0432 Valyl-tRNA synthetase 95.3 0.035 7.5E-07 65.4 7.1 94 277-370 80-212 (995)
122 PLN02886 aminoacyl-tRNA ligase 94.9 0.05 1.1E-06 59.8 6.6 91 275-377 49-148 (389)
123 PRK12300 leuS leucyl-tRNA synt 94.5 0.082 1.8E-06 64.2 7.7 61 497-573 565-625 (897)
124 PF02637 GatB_Yqey: GatB domai 94.1 0.2 4.4E-06 47.6 7.9 102 73-178 43-147 (148)
125 COG0064 GatB Asp-tRNAAsn/Glu-t 94.0 1.5 3.3E-05 49.4 15.6 156 16-178 311-479 (483)
126 smart00845 GatB_Yqey GatB doma 93.7 0.54 1.2E-05 44.8 10.1 101 73-178 42-146 (147)
127 TIGR00422 valS valyl-tRNA synt 93.7 0.16 3.4E-06 61.6 7.9 73 489-578 502-577 (861)
128 PLN02943 aminoacyl-tRNA ligase 93.6 0.11 2.5E-06 63.4 6.5 65 496-578 569-634 (958)
129 PRK06039 ileS isoleucyl-tRNA s 93.4 0.12 2.6E-06 63.4 6.3 66 497-578 579-645 (975)
130 PF09424 YqeY: Yqey-like prote 92.8 0.45 9.7E-06 45.4 7.8 85 74-178 57-142 (143)
131 PRK13208 valS valyl-tRNA synth 92.3 0.31 6.7E-06 58.6 7.5 59 496-571 519-578 (800)
132 PRK05729 valS valyl-tRNA synth 92.1 0.35 7.5E-06 58.8 7.6 67 496-579 506-573 (874)
133 PRK12300 leuS leucyl-tRNA synt 91.9 0.25 5.4E-06 60.2 6.2 80 287-368 1-128 (897)
134 PLN02843 isoleucyl-tRNA synthe 90.9 0.62 1.3E-05 57.3 8.2 60 495-570 596-664 (974)
135 PRK14900 valS valyl-tRNA synth 90.9 0.47 1E-05 58.7 7.2 65 497-578 525-590 (1052)
136 COG0162 TyrS Tyrosyl-tRNA synt 90.5 2.3 5.1E-05 47.2 11.4 31 486-516 200-231 (401)
137 COG0525 ValS Valyl-tRNA synthe 90.5 0.7 1.5E-05 55.5 7.8 95 467-578 479-577 (877)
138 TIGR00234 tyrS tyrosyl-tRNA sy 90.1 1.2 2.6E-05 49.0 8.8 86 261-351 20-124 (377)
139 TIGR00392 ileS isoleucyl-tRNA 90.1 0.43 9.3E-06 57.9 5.8 63 497-576 598-661 (861)
140 PLN02959 aminoacyl-tRNA ligase 89.8 0.68 1.5E-05 57.5 7.3 9 358-366 502-510 (1084)
141 PHA01735 hypothetical protein 88.4 0.82 1.8E-05 38.1 4.4 55 76-131 19-75 (76)
142 PRK05743 ileS isoleucyl-tRNA s 87.9 0.84 1.8E-05 55.8 6.2 57 498-571 580-637 (912)
143 PLN02882 aminoacyl-tRNA ligase 87.9 0.81 1.8E-05 57.2 6.2 68 491-574 594-664 (1159)
144 cd02156 nt_trans nucleotidyl t 87.4 1.4 3E-05 39.2 5.8 39 277-320 2-40 (105)
145 PRK13804 ileS isoleucyl-tRNA s 86.7 1.6 3.4E-05 53.7 7.6 59 496-571 616-675 (961)
146 PTZ00419 valyl-tRNA synthetase 85.7 1.4 3E-05 54.5 6.4 53 284-339 313-376 (995)
147 PTZ00427 isoleucine-tRNA ligas 85.3 1.9 4E-05 54.2 7.3 64 498-577 708-773 (1205)
148 KOG2713 Mitochondrial tryptoph 84.0 1.9 4E-05 45.6 5.5 68 281-349 20-99 (347)
149 COG0060 IleS Isoleucyl-tRNA sy 83.6 1.9 4.2E-05 52.4 6.2 91 280-370 57-185 (933)
150 PF00133 tRNA-synt_1: tRNA syn 81.2 3.5 7.7E-05 48.1 7.1 74 467-557 515-593 (601)
151 PLN02381 valyl-tRNA synthetase 80.1 3.3 7.2E-05 51.5 6.7 35 543-578 710-744 (1066)
152 COG0495 LeuS Leucyl-tRNA synth 79.9 1.3 2.9E-05 53.1 3.1 38 506-559 576-613 (814)
153 PRK00390 leuS leucyl-tRNA synt 76.7 5.1 0.00011 48.5 6.7 54 498-572 564-617 (805)
154 PLN02563 aminoacyl-tRNA ligase 73.7 3.6 7.8E-05 50.7 4.5 56 506-578 720-775 (963)
155 KOG2438 Glutamyl-tRNA amidotra 73.2 1.1E+02 0.0025 34.4 15.1 162 15-179 327-503 (505)
156 TIGR00396 leuS_bact leucyl-tRN 72.6 5.9 0.00013 48.2 5.9 47 509-571 604-650 (842)
157 KOG0437 Leucyl-tRNA synthetase 67.7 9.5 0.00021 45.2 5.8 70 270-341 41-116 (1080)
158 COG0060 IleS Isoleucyl-tRNA sy 62.5 3.7 8E-05 50.0 1.4 56 500-572 592-648 (933)
159 KOG0433 Isoleucyl-tRNA synthet 62.0 16 0.00035 43.3 6.3 108 260-370 45-189 (937)
160 cd02156 nt_trans nucleotidyl t 56.9 7.3 0.00016 34.5 2.0 46 469-514 59-105 (105)
161 PF00749 tRNA-synt_1c: tRNA sy 51.3 1.4 3.1E-05 47.2 -4.1 37 524-560 258-294 (314)
162 KOG0437 Leucyl-tRNA synthetase 50.1 3.6 7.8E-05 48.5 -1.4 79 467-562 664-747 (1080)
163 PF09682 Holin_LLH: Phage holi 42.6 41 0.0009 30.4 4.6 40 88-139 65-104 (108)
164 KOG0432 Valyl-tRNA synthetase 42.0 52 0.0011 40.0 6.3 43 297-339 337-388 (995)
165 PLN02207 UDP-glycosyltransfera 41.5 42 0.00092 38.1 5.5 68 113-187 389-468 (468)
166 COG1610 Uncharacterized conser 38.8 3.1E+02 0.0067 26.5 9.8 85 74-178 61-146 (148)
167 PF09312 SurA_N: SurA N-termin 35.2 38 0.00082 30.9 3.2 60 81-140 6-84 (118)
168 PTZ00183 centrin; Provisional 34.0 3.4E+02 0.0073 24.7 9.5 47 89-135 88-135 (158)
169 COG0177 Nth Predicted EndoIII- 30.8 1.7E+02 0.0036 30.0 7.1 28 4-31 64-91 (211)
170 cd02168 NMNAT_Nudix Nicotinami 30.2 1.5E+02 0.0032 29.3 6.6 34 274-316 3-36 (181)
171 COG1056 NadR Nicotinamide mono 30.0 30 0.00065 34.2 1.6 60 272-340 5-70 (172)
172 PRK13793 nicotinamide-nucleoti 29.4 34 0.00075 34.5 2.0 39 273-320 7-45 (196)
173 KOG0433 Isoleucyl-tRNA synthet 29.2 21 0.00046 42.4 0.5 65 498-573 601-666 (937)
174 KOG2145 Cytoplasmic tryptophan 28.1 57 0.0012 34.9 3.4 57 284-342 96-161 (397)
175 PF10440 WIYLD: Ubiquitin-bind 27.7 46 0.001 27.7 2.1 29 4-32 6-34 (65)
176 COG3118 Thioredoxin domain-con 26.9 1.8E+02 0.0039 31.3 6.8 87 92-189 205-291 (304)
177 PF01320 Colicin_Pyocin: Colic 25.0 1.6E+02 0.0035 25.8 5.1 62 77-139 17-78 (85)
178 COG3372 Predicted nuclease of 24.9 3E+02 0.0065 30.7 8.2 107 9-129 29-147 (396)
179 PRK11511 DNA-binding transcrip 24.8 2.6E+02 0.0056 25.6 6.8 45 89-137 7-51 (127)
180 KOG4426 Arginyl-tRNA synthetas 24.5 62 0.0013 36.5 3.0 46 272-317 187-235 (656)
181 KOG3349 Predicted glycosyltran 24.3 54 0.0012 32.0 2.2 20 354-373 117-136 (170)
182 PF14069 SpoVIF: Stage VI spor 22.3 1.6E+02 0.0035 25.5 4.5 48 78-140 18-65 (79)
183 PRK13503 transcriptional activ 21.4 5.7E+02 0.012 25.9 9.4 45 89-137 169-213 (278)
184 cd02167 NMNAT_NadR Nicotinamid 20.7 63 0.0014 31.1 1.9 23 274-303 3-25 (158)
185 PRK10219 DNA-binding transcrip 20.6 3E+02 0.0065 24.0 6.2 44 91-138 5-48 (107)
186 COG4720 Predicted membrane pro 20.4 57 0.0012 32.4 1.5 31 276-306 25-56 (177)
187 PF07499 RuvA_C: RuvA, C-termi 20.4 73 0.0016 24.4 1.9 24 10-33 4-27 (47)
188 cd05029 S-100A6 S-100A6: S-100 20.3 1.1E+02 0.0023 26.6 3.1 29 106-134 27-59 (88)
No 1
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-177 Score=1410.54 Aligned_cols=594 Identities=56% Similarity=0.935 Sum_probs=565.2
Q ss_pred CChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchhHHHHHHhhCC
Q 006869 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSK 86 (628)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~~l~~~I~~gk 86 (628)
|++++++++|.+|||||+||+||+||++|+++|..+|.+++.+++||++.|+|||+|||++++|..+|+++|++||++|+
T Consensus 1 ~~~~dl~~~f~~lGlse~k~~etlKn~kvs~~l~~~i~~a~~~~~~~~~~g~Lly~lAt~~~~q~~~~~~llv~yI~~~~ 80 (764)
T KOG1148|consen 1 MAMEDLIALFTSLGLSEKKVKETLKNKKVSANLEKIIKEADVSSGCDRTTGNLLYTLATKLKPQKLAHLPLLVSYIVNGK 80 (764)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHhHHHHHHHHHHHHHhcccccccccccchhHHHHHhhcCccccccchHHHHHHHhcc
Confidence 68899999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCC
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWA 166 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWA 166 (628)
|||++||+||++|++++ ++|..+|+++|||||+||+|||+++|.++|++|++.|+++||+||.| |+|.||+.||||
T Consensus 81 ikt~~ql~aa~~Y~~~~---~~~~~~fe~ecgvgvvvtpeqie~~V~~~i~~~k~~il~eRy~~~~g-l~~~~R~~LkwA 156 (764)
T KOG1148|consen 81 IKTELQLDAALEYVKSH---TLDKKDFEKECGVGVVVTPEQIEEAVRKYIAENKEKILEERYHFNKG-LFGDVRKELKWA 156 (764)
T ss_pred cCchHHHHHHHHHHhcc---ccchhhhhhhcCccEEECHHHHHHHHHHHHHHhHHHHHHHHHhcchh-hHHHHHhhcCCC
Confidence 99999999999999984 58889999999999999999999999999999999999999999999 999999999999
Q ss_pred ChhhhHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhhcCCCcchhhh-----cccCCCCCCCCccccCCCCCCCCCCCCc
Q 006869 167 DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDK-----KFANDAPVQLPEEDLFPISNFPPPEENY 241 (628)
Q Consensus 167 d~~~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (628)
|++.||++||+++++||||||++|++++.|++++ +.++++.+.++ .++....+++.|+|+. +||+||||+
T Consensus 157 D~~~vk~~iD~~~l~LlGpkte~dl~~~~k~~k~--~~~k~~~~~~~~~~~~e~~s~~~~~~~e~~~~---~~hk~gent 231 (764)
T KOG1148|consen 157 DPKSVKKEIDKEVLELLGPKTEADLEKKKKKKKA--EGEKKKTVSAKKAKNQEAASDKAPQIEELFLT---KFHKPGENT 231 (764)
T ss_pred CHHHHHHHHhhHHHHhcCccchhhcccccccccc--cccccccccCCCCCchhhhcccccchhhhhhh---hcccCCCCc
Confidence 9999999999999999999999999988665422 11222111111 1122335688899999 999999996
Q ss_pred ccccccccCCCccccccCcHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccc
Q 006869 242 KVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAE 321 (628)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~ 321 (628)
| +|+++|++||+.|||+|+|||||+|||+|||||++++.+||+||+.+||.|+||||||||+++
T Consensus 232 ~----------------~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkE 295 (764)
T KOG1148|consen 232 Q----------------HTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKE 295 (764)
T ss_pred c----------------chHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchh
Confidence 6 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCCCccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhc-cCCCCCCCCCHHHHhHHH
Q 006869 322 KKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK-KMNSPWRDRPIAESLKLF 400 (628)
Q Consensus 322 ~~~~~~~I~~~L~wLGl~pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~-~y~~~~R~~~~ee~l~~f 400 (628)
.++|+++|.++++|||++|++++|+||||+++|++|.+||++|+||+|||+.+||++.|+. .-+|+||+||+||||++|
T Consensus 296 ee~yf~sI~e~V~WLG~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~~~spwRdRPieEsL~lF 375 (764)
T KOG1148|consen 296 EEEYFESIKEMVAWLGFEPYKVTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNERLSPWRDRPIEESLRLF 375 (764)
T ss_pred hHHHHHHHHHHHHHhCCCceeeecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCCCCCccccCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999883 346999999999999999
Q ss_pred HHhhcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccc
Q 006869 401 EDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRR 480 (628)
Q Consensus 401 ~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~ 480 (628)
++|++|++.+|+++||||+|++++|++|+|+|+||+.+.||||+|++|||||||+||||++||+++|||++|+.||..++
T Consensus 376 ~~Mr~Gk~~eGeAtLRmK~dl~~~~p~m~DlvayRik~~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR 455 (764)
T KOG1148|consen 376 EDMRDGKYEEGEATLRMKQDLESGNPQMWDLVAYRIKNVPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRR 455 (764)
T ss_pred HHHhcCCcCcChhheeeeeeccCCCccccccceeeeecCCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCceeeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCC
Q 006869 481 ASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (628)
Q Consensus 481 ~~q~~L~~aLg~~~P~~~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~ 560 (628)
.+|+|||++|++|+|.||+|+|||++|++||||++.+||++|+|+||||||++||.+|||||++|+||++||++||+|.+
T Consensus 456 ~SY~WLcnaL~iY~P~qwEYgRLNv~~tv~SKRKi~~Lv~~~~V~~wDDPRLfTL~alRRRG~ppeAIn~F~~~lGvT~a 535 (764)
T KOG1148|consen 456 SSYYWLCNALEIYCPVQWEYGRLNVTYTVVSKRKILKLVTEGYVRGWDDPRLFTLTALRRRGFPPEAINNFCASLGVTTA 535 (764)
T ss_pred hhHHHHHhhhhcccchhhhhceeeeeeeeeehHHHHHHhhhcccccCCCccchhhhhHHhcCCCHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHhhhccCCCCcceeeccceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 561 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 561 ~~~~~~~~le~~ir~~~~~~~~r~~~v~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
++++++.+||.+||++++.++||.|+|++|+||+|+|+++++.+.+++|++|. +|.+|+|+|||+
T Consensus 536 ~~~i~v~~lE~~VRd~Ln~tapR~M~VleplkVti~N~~~~~~~~i~iPd~P~---dp~~g~~~Vpft 600 (764)
T KOG1148|consen 536 QTTIDVARLEAAVRDYLNDTAPRLMFVLEPLKVTIENLSDDYPESIEIPDFPG---DPTSGFHKVPFT 600 (764)
T ss_pred eceecHHHHHHHHHHHHhccCcceEEeecceEEEEecCCcchhhhccCCCCCC---CCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999998 899999999996
No 2
>PLN02859 glutamine-tRNA ligase
Probab=100.00 E-value=2.1e-172 Score=1450.62 Aligned_cols=616 Identities=83% Similarity=1.297 Sum_probs=589.0
Q ss_pred CChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchhHHHHHHhhCC
Q 006869 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSK 86 (628)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~~l~~~I~~gk 86 (628)
..+++++++|++|||||+||+||+||++++++|..+|++|++..+||+++|+|||+|||+++++...||++|++||++|+
T Consensus 3 ~~~~~~~~~f~~IGL~e~kAketlKN~klt~~L~~iI~ea~~~~~~dk~~g~LLy~LAtk~~~~~~~~r~~lv~~I~~gk 82 (788)
T PLN02859 3 ANSEKPLELFLKIGLDERTARNAIANNKVTSNLTAVIHEAGVTNGCDKTVGNLLYTVATKYPANALVHRPTLLSYIVSSK 82 (788)
T ss_pred CccHHHHHHHHHcCCChHHHHHHHhCHHHHHHHHHHHHhcCCccCCChHHHHHHHHHHHhcCCccchhHHHHHHHHHhCC
Confidence 45678899999999999999999999999999999999999977799999999999999999888999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCC
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWA 166 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWA 166 (628)
|||++||+||++|+++++..++|.++||++|||||+||+|||+++|++||++|+++|+++||++|+|.||++||+.||||
T Consensus 83 IkT~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGVGV~VT~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwa 162 (788)
T PLN02859 83 IKTPAQLEAAFSFFSSTGPESFDLNKFEEACGVGVVVSPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWA 162 (788)
T ss_pred CCCHHHHHHHHHHHHhCCCCccCHHHHHHhCCCCEEECHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCC
Confidence 99999999999999999867899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhhcCCCcchhhhcccCCCCCCCCccccCCCCCCCCCCCCcccccc
Q 006869 167 DPKIVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPEKDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTE 246 (628)
Q Consensus 167 d~~~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (628)
|++.||++||+++++||||||++|.+|++|++++ ++++++++ ......++|++||+++++.||+||||+++|+.
T Consensus 163 d~~~~k~~id~~~~~llg~k~~~d~~~~~k~~k~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~en~~~~~~ 236 (788)
T PLN02859 163 DPKIVKKLIDKKLYELLGEKTAADNEKPVKKKKE-----KPAKVEEK-KVAVAAAPPSEEELNPYSIFPQPEENFKVHTE 236 (788)
T ss_pred CHHHHHHHHHHHHHHhcCCcchhhhccccccccc-----cccccccc-cccccccccchhhccccccCCCccccccccce
Confidence 9999999999999999999999998865544211 11111111 11234589999999999999999999999999
Q ss_pred cccCCCccccccCcHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHH
Q 006869 247 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYI 326 (628)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~ 326 (628)
+.+++|+++..+||+++|++||+.|+|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDTdp~r~~~e~~ 316 (788)
T PLN02859 237 VFFSDGSVLRPSNTKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYI 316 (788)
T ss_pred eeccccccccccCcHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcc
Q 006869 327 DHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 406 (628)
Q Consensus 327 ~~I~~~L~wLGl~pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G 406 (628)
++|+++|+|||++|++++|||+||+.+|++|.+||++|+||+|+||+++|++.|..+.+|+||++++++++.+|++|+.|
T Consensus 317 ~~I~edL~WLG~~~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g 396 (788)
T PLN02859 317 DHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRG 396 (788)
T ss_pred HHHHHHHHHcCCCCCCcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHH
Q 006869 407 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWL 486 (628)
Q Consensus 407 ~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L 486 (628)
.+.+|+++||||+|+.+++++|+|+|+||+.+.+|+++||+|++|||||||||||||+|||||||||.||++|+++|+||
T Consensus 397 ~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl 476 (788)
T PLN02859 397 LIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWL 476 (788)
T ss_pred hhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCceeeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCc-ccc
Q 006869 487 LHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS-LIR 565 (628)
Q Consensus 487 ~~aLg~~~P~~~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~-~~~ 565 (628)
+++||++.|.|||||+||++|+|||||++.++|++|+|+||||||++||++||||||+|+||+|||+.+|||..++ +++
T Consensus 477 ~~aLg~~~P~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~ 556 (788)
T PLN02859 477 LDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIR 556 (788)
T ss_pred HHHcCCCCCcEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 899
Q ss_pred hhhHHHHHHhhhccCCCCcceeeccceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 566 LDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 566 ~~~le~~ir~~~~~~~~r~~~v~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
+..|++++++.++..++|.|+|+||+||+|+|+|++..+.+.+|.||.+|.+|++|+|+|+|+
T Consensus 557 ~~~Le~~~r~~l~~~a~R~maV~dp~kv~i~n~~~~~~~~~~~~~~P~~p~~~~~g~r~v~f~ 619 (788)
T PLN02859 557 MDRLEHHIREELNKTAPRTMVVLHPLKVVITNLESGEVIELDAKRWPDAQNDDPSAFYKVPFS 619 (788)
T ss_pred HHHHHhhCHHhhCCcCcchheecCCeEEEEecCCCCceeecccccCCCCCCCccCceEEEEEC
Confidence 999999999999999999999999999999999998888899999999888999999999996
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.8e-108 Score=900.27 Aligned_cols=382 Identities=54% Similarity=0.986 Sum_probs=368.0
Q ss_pred CCCCCCCCCCcccccccccCCCccccccCcHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEE
Q 006869 231 ISNFPPPEENYKVHTEIPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCY 310 (628)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~i 310 (628)
.+.||..+++... .|+ .|||+++++|++.++|+|+|||||||||||||||||+|++||++||++||+|+
T Consensus 19 ~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~i 87 (574)
T PTZ00437 19 KRDLSLLQTGRPV-------PGC----RNTPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCY 87 (574)
T ss_pred ccchhhhcccCCC-------ccc----CCCHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEE
Confidence 3467777776553 233 68899999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCC
Q 006869 311 LRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRD 390 (628)
Q Consensus 311 LRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~ 390 (628)
||||||||+|+.++|+++|+++|+|||++||+++|||+|++.||++|.+||++|+||+|+||+++|++.|..+.+|+||+
T Consensus 88 LRiEDTDp~r~~~e~~~~I~~dL~wLGi~~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~~R~~~~~~~~R~ 167 (574)
T PTZ00437 88 LRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRN 167 (574)
T ss_pred EEECCCCccccChHHHHHHHHHHHHcCCCCCCCCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHHHhhcccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred CCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCccee
Q 006869 391 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS 470 (628)
Q Consensus 391 ~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThv 470 (628)
++++++|.+|++|++|.+.+|++|||+|+|+.++|++|+|+|+||+.+.+|+++||+|+||||||||||||||+||||||
T Consensus 168 ~~~eenL~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHv 247 (574)
T PTZ00437 168 RSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYS 247 (574)
T ss_pred CCHHHHHHHHHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCceEEEccCcccceeechhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHH
Q 006869 471 LCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINA 550 (628)
Q Consensus 471 irG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~ 550 (628)
|||.||..+++.|+||+++|+++.|.+|+|++||++|+|||||++.++|++|+|+||||||+.||++||||||+|+||++
T Consensus 248 lct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~ 327 (574)
T PTZ00437 248 LCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINR 327 (574)
T ss_pred eeechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceeeccceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 551 FVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 551 fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
||..+|||.+++.+++..|++++|+.+++.++|.|+|+||+||+|.|++.. ..+++|+||+ +|++|+|+|+|+
T Consensus 328 f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~~--~~~~~p~hP~---~~~~G~R~i~~~ 400 (574)
T PTZ00437 328 FCELVGITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGE--REFECPNHPR---KPELGSRKVMFT 400 (574)
T ss_pred HHHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCCc--eEEeccCCCC---CCcCceEEEEEc
Confidence 999999999999999999999999999999999999999999999998753 6678999998 889999999986
No 4
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.7e-104 Score=868.99 Aligned_cols=365 Identities=54% Similarity=0.953 Sum_probs=349.9
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCC
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~ 339 (628)
.+++++.|+.. .|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||+.
T Consensus 15 ~~~~~~dl~~~~~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLGi~ 94 (554)
T PRK05347 15 RQIIDEDLASGKHTRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFD 94 (554)
T ss_pred HHHHHhHHhcCCcCceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 34555555553 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhc----cCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 340 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK----KMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 340 pd-~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~----~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
|| +++|||+|++.||++|++||++|+||+|+||++++++.|+. +++|+||+++++|++.+|++|++|.+.+|+++
T Consensus 95 ~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~g~~v 174 (554)
T PRK05347 95 WSGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPEGSAV 174 (554)
T ss_pred CCCCceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCCCcEE
Confidence 94 68999999999999999999999999999999999999874 78999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCC-C
Q 006869 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL-Y 493 (628)
Q Consensus 415 lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~-~ 493 (628)
||+|+|+.++|++|+|+|+||+.+.+||++|++|++|||||||||||||+|||||||||.||++|++.|.||+++||+ +
T Consensus 175 lR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~ 254 (554)
T PRK05347 175 LRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPP 254 (554)
T ss_pred EEEEeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCceeeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHH
Q 006869 494 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (628)
Q Consensus 494 ~P~~~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~i 573 (628)
.|.+|+|+|||++|+|||||++.++|++|.|.||||||+.||++||++||+|+||++||+.+|||..+..+++..|++++
T Consensus 255 ~P~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~n 334 (554)
T PRK05347 255 HPRQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCI 334 (554)
T ss_pred CCceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCcceeeccceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 574 r~~~~~~~~r~~~v~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
|+.++..+||.|+|+||++|.|.|++++..+.+++|+||+ +|++|+|+|+|+
T Consensus 335 Rk~ld~~a~R~m~V~~pv~v~i~n~~~~~~~~~~~p~hP~---~~~~G~r~i~~~ 386 (554)
T PRK05347 335 REDLNENAPRAMAVLDPLKLVITNYPEGQVEELEAPNHPE---DPEMGTREVPFS 386 (554)
T ss_pred HHHhccCCCceEEEcCCeEEEEEeCCCCceEEEEecCCCC---CCcCceEEEEEc
Confidence 9999999999999999999999999987777889999998 889999999986
No 5
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=100.00 E-value=9.6e-104 Score=866.63 Aligned_cols=356 Identities=37% Similarity=0.611 Sum_probs=345.0
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCccc
Q 006869 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (628)
Q Consensus 270 ~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~ 349 (628)
+++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||++||+++|||+|
T Consensus 7 a~~g~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R~~~e~~~~I~~dL~WLGl~wD~~~~qSdr 86 (523)
T PLN03233 7 AIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFTSDY 86 (523)
T ss_pred CCCCeEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCccchHHHHHHHHHHHHhCCCCCCCcccccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCC
Q 006869 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (628)
Q Consensus 350 ~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~ 429 (628)
++.||++|++||++|+||+|+||++|+++.|+..++++||++++++++++|++|.+|.+.+|++++|+|+++.+++.+|+
T Consensus 87 ~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~ 166 (523)
T PLN03233 87 FEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLR 166 (523)
T ss_pred HHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCCCCc
Confidence 99999999999999999999999999999998889999999999999999999999998888999999999999999999
Q ss_pred ceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCcc
Q 006869 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (628)
Q Consensus 430 D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~K 509 (628)
|+|++|+...+|+++||+||||||||||||||||+|||||||||.||++||++|.||+++||++.|.||||+|||+.|+|
T Consensus 167 D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~~~f~rln~~~~k 246 (523)
T PLN03233 167 DPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFMNTV 246 (523)
T ss_pred CCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCeeeeeEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceee-
Q 006869 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL- 588 (628)
Q Consensus 510 LSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~- 588 (628)
||||++.++|++|.|+||||||+.||++||||||+|+||++||+.+|+|..++.+++..|++++|+.++..++|.|+|.
T Consensus 247 LSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~a~R~m~V~~ 326 (523)
T PLN03233 247 LSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMAIDK 326 (523)
T ss_pred ccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHhcccCCceEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -ccceeEEecCCCCcee-eeecccCCCCCCCCCCCceEEecC
Q 006869 589 -NPLKVVITNMESGTIM-HLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 589 -dp~kl~i~n~~~~~~~-~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
||+||+|.|+|.+... .+.+|+||+ +|++|+|+|+|+
T Consensus 327 ~~pv~v~i~n~~~~~~~~~~~~p~hP~---~~~~G~r~v~~~ 365 (523)
T PLN03233 327 ADHTALTVTNADEEADFAFSETDCHPK---DPGFGKRAMRIC 365 (523)
T ss_pred CCcEEEEecCCCCccceeccccccCCC---CCCCceEEEEEC
Confidence 6999999999876433 358999998 889999999996
No 6
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=100.00 E-value=8.2e-101 Score=876.30 Aligned_cols=365 Identities=49% Similarity=0.902 Sum_probs=354.0
Q ss_pred HHHHHHhhhh-cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCC
Q 006869 261 KEVLDKHLEV-TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (628)
Q Consensus 261 ~~~~~~h~~~-~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~ 339 (628)
.+++++||+. ..|+|+|||||||||||||||||+|++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++
T Consensus 17 ~~~~~~~l~~g~~~~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDTd~~r~~~e~~~~I~~dl~wLG~~ 96 (771)
T PRK14703 17 TEIIEEDLEAGRYPRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFD 96 (771)
T ss_pred HHHHHHHHhcCCCCceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCcCChHHHHHHHHHHHHcCCC
Confidence 5688999988 778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh----ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 340 PFK-ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 340 pd~-~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~----~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
||+ ++|||+|++.||++|++||++|+||+|+||+++|++.|+ .+++|+||++++++++.+|++|+.|.+.+|+++
T Consensus 97 wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g~~v 176 (771)
T PRK14703 97 WGEHLYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDGAHV 176 (771)
T ss_pred CCCCceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCCCeE
Confidence 986 799999999999999999999999999999999999997 579999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCC-
Q 006869 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 493 (628)
Q Consensus 415 lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~- 493 (628)
||+|+|+.++|++|+|+|+||+...+|+++||+||+|||||||||||||+|||||||||.||++|++.|.||+++||+.
T Consensus 177 lR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~l~~~l~~~~ 256 (771)
T PRK14703 177 LRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWP 256 (771)
T ss_pred EEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999653
Q ss_pred -CCceeeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 494 -QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 494 -~P~~~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
.|.+|+|+|||+.|++||||++.++|++|.|+||||||+.||++||++||+|+||++||..+|||..++.+++..|+++
T Consensus 257 ~~P~~~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~ 336 (771)
T PRK14703 257 PRPRQYEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFA 336 (771)
T ss_pred CCcceeEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCcceeeccceeEEecCCCCceeeeecccCCCCCCC-CCCCceEEecC
Q 006869 573 IREELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-DASAFYKVIFE 628 (628)
Q Consensus 573 ir~~~~~~~~r~~~v~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~-~~~g~~~~~~~ 628 (628)
+|+.++..+||.|+|+||+||+|.|++++....+.+|+||+ + |++|+|+|+|+
T Consensus 337 ~R~~ld~~a~R~~~V~~p~~v~i~n~~~~~~~~~~~p~hp~---~~~~~G~r~v~~~ 390 (771)
T PRK14703 337 IRDDLNRRAPRVMAVLDPLKVVIENLPAGKVEELDLPYWPH---DVPKEGSRKVPFT 390 (771)
T ss_pred HHHHhccCCCceEEEcCCeEEEEEeCCCCceEEEeccCCCC---CCccCceEEEEEc
Confidence 99999999999999999999999999988788899999998 6 89999999996
No 7
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.2e-101 Score=851.39 Aligned_cols=356 Identities=37% Similarity=0.600 Sum_probs=346.1
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcc
Q 006869 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSD 348 (628)
Q Consensus 270 ~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd 348 (628)
+++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||++||+ ++|||+
T Consensus 48 a~~~~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R~~~e~~d~IleDL~WLGl~wDe~~~~QSd 127 (601)
T PTZ00402 48 AEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGPTYSSD 127 (601)
T ss_pred CCCCeeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcccCHHHHHHHHHHHHHCCCCCCCceeeccc
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred cHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCC
Q 006869 349 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 428 (628)
Q Consensus 349 ~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~ 428 (628)
|++.||++|++||++|+||+|+||++++++.|..+++++||++++++++.+|+.|++|.+.+|.+++|+|+++.+++.+|
T Consensus 128 r~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~~~ 207 (601)
T PTZ00402 128 YMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAM 207 (601)
T ss_pred cHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCCCc
Confidence 99999999999999999999999999999888778999999999999999999999998878899999999998889999
Q ss_pred CceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCc
Q 006869 429 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNT 508 (628)
Q Consensus 429 ~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~ 508 (628)
+|+|+||+...+|+++||+||||||||||||||||+|||||||||.||+++|+.|.||+++||++.|.|||||+||.+|+
T Consensus 208 rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~rLn~~g~ 287 (601)
T PTZ00402 208 RDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRLNMEYS 287 (601)
T ss_pred cCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEeeEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceee
Q 006869 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 588 (628)
Q Consensus 509 KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~ 588 (628)
|||||++..+|++|+|.||||||+.||++||||||+|++|++||..+|+|.+++.+++..|++++|++++..+||.|+|+
T Consensus 288 kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~~a~R~maV~ 367 (601)
T PTZ00402 288 VMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPRYTVVS 367 (601)
T ss_pred cccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhhcCCceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 589 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 589 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
||+||+|+|.+++..+.+++|+||+ +|++|+|+|+|+
T Consensus 368 ~p~kv~i~~~~~~~~~~~~~p~hP~---~~~~G~r~i~~~ 404 (601)
T PTZ00402 368 NTLKVRCTVEGQIHLEACEKLLHKK---VPDMGEKTYYKS 404 (601)
T ss_pred CCCEEEEEECCCCcceEeeccCCCC---CcccCceEEEEC
Confidence 9999999999887777888999998 899999999996
No 8
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=100.00 E-value=5.2e-101 Score=845.93 Aligned_cols=350 Identities=53% Similarity=0.928 Sum_probs=338.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCC-CccCCcccHHHH
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQEL 353 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd-~~~~qSd~~~~~ 353 (628)
|+|||||||||+|||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||++|| .+++||+|++.|
T Consensus 1 V~tRFaPsPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~~r~~~e~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~ 80 (522)
T TIGR00440 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEGKIRYSSDYFDEL 80 (522)
T ss_pred CeEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCcccCChHHHHHHHHHHHHcCCCCCCCceEccccHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999995 589999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhh----ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCC
Q 006869 354 YELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (628)
Q Consensus 354 ~e~a~~Li~~G~AY~C~cs~eei~~~r~----~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~ 429 (628)
|++|++||++|+||+|+||++++++.|+ ++|+|+||+++++|++.+|++|++|.+++|+++||+|+|+.+++++|+
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g~~vlR~Kid~~~~n~~~r 160 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCCCeEEEEeCcCCCCCceEe
Confidence 9999999999999999999999999985 679999999999999999999999999999999999999988999999
Q ss_pred ceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCC-CCceeeeeeecCCCc
Q 006869 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNVSNT 508 (628)
Q Consensus 430 D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~-~P~~~~~~~Ln~~g~ 508 (628)
|+|+||+.+.+|+++||+|++|||||||||||||+|||||||||+||++|++.|.||+++++++ .|.+|+|+|||++|+
T Consensus 161 D~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~rln~~~~ 240 (522)
T TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSRLNLEGT 240 (522)
T ss_pred eeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred ccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceee
Q 006869 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVL 588 (628)
Q Consensus 509 KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~ 588 (628)
|||||++..+|++|+|+||||||+.||++||++||+|+||+|||+.||||..+..++++.|++++++|+++.++|+|+|+
T Consensus 241 kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~~r~~av~ 320 (522)
T TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320 (522)
T ss_pred CcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999988778999999999999999999999999
Q ss_pred ccceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 589 NPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 589 dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
||.||+|.|++... +..++|+||+ +|++|.|.|+|+
T Consensus 321 d~~kl~i~~~~~~~-~~~~~p~~p~---~~~~g~r~v~~~ 356 (522)
T TIGR00440 321 DPVEVVIENLSDEY-ELATIPNHPN---TPEFGERQVPFT 356 (522)
T ss_pred ccceEEEecCCCCc-eEEeccCCCC---ChhHeeEEEEec
Confidence 99999999998642 3668899998 889999999985
No 9
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.1e-98 Score=827.98 Aligned_cols=351 Identities=32% Similarity=0.543 Sum_probs=342.1
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCc--ccccHHHHHHHHHHHHHcCCCCCCccCCccc
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP--EAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~--~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~ 349 (628)
+|+|+|||||||||||||||||+|++||++||++||+|+|||||||| +|+.++|+++|+++|+|||+.||+++|||+|
T Consensus 99 ~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~~R~~~e~~~~I~edL~wLGl~wD~~~~qSdr 178 (567)
T PRK04156 99 KGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILEDLKWLGVKWDEVVIQSDR 178 (567)
T ss_pred CCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCcccchHHHHHHHHHHHHHcCCCCCCccCcccC
Confidence 67899999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCC
Q 006869 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (628)
Q Consensus 350 ~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~ 429 (628)
++.||++|++||++|+||+|+||++++++.|...++|+||++++++++.+|++|.+|.+.+|+++||+|+++.+.+++|+
T Consensus 179 ~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~r 258 (567)
T PRK04156 179 LEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVR 258 (567)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCcc
Confidence 99999999999999999999999999999988789999999999999999999999999999999999999989999999
Q ss_pred ceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCcc
Q 006869 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (628)
Q Consensus 430 D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~K 509 (628)
|||+||+...+|+++|++|++|||||||||||||+|||||||||.||+.|+++|.||+++||+..|.|+|||+|+.+|+|
T Consensus 259 D~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~k 338 (567)
T PRK04156 259 DWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFV 338 (567)
T ss_pred ccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceeec
Q 006869 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 589 (628)
Q Consensus 510 LSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~d 589 (628)
||||++.++|++|.|+||||||+.||++||++||+|+||++||+.+||+.++..++++.|++++|+.+++.++|.|+|.|
T Consensus 339 LSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~a~R~~~V~~ 418 (567)
T PRK04156 339 LSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPIANRYFFVRD 418 (567)
T ss_pred eecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhccCCceEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 590 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 590 p~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
|+||+|.|.+. ..+++|+||+ +|++|+|+|+|+
T Consensus 419 pv~v~i~~~~~---~~~~~p~hP~---~~~~G~r~v~~~ 451 (567)
T PRK04156 419 PVELEIEGAEP---LEAKIPLHPD---RPERGEREIPVG 451 (567)
T ss_pred ceEEEEcCCCc---eEEEcCCCCC---CCCCceEEEEEC
Confidence 99999999643 5678999998 899999999996
No 10
>PLN02907 glutamate-tRNA ligase
Probab=100.00 E-value=6.1e-98 Score=854.30 Aligned_cols=353 Identities=36% Similarity=0.624 Sum_probs=343.5
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCcccHH
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 351 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~~ 351 (628)
.|+|||||||||||||||||||||++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++||+++|||+|++
T Consensus 211 ~~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDTdp~r~~~e~~~~I~~dl~wLG~~~d~~~~qS~r~~ 290 (722)
T PLN02907 211 EGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFP 290 (722)
T ss_pred CCceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCCcCChHHHHHHHHHHHHcCCCCCCcccccccHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCce
Q 006869 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~ 431 (628)
.||++|++||++|+||+|+|+++++++.|..+|+|+||++++++++.+|++|++|.+.+++++||+|+|+.++|.+|+|+
T Consensus 291 ~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~ 370 (722)
T PLN02907 291 QLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDP 370 (722)
T ss_pred HHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCCCCcccC
Confidence 99999999999999999999999999998888999999999999999999999999988999999999999999999999
Q ss_pred EEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCcccc
Q 006869 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 511 (628)
Q Consensus 432 Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~KLS 511 (628)
|+||+...+|+++||+|++|||||||||||||+|||||||||.||++|+++|.||+++||++.|.+|+|+|||++|+|||
T Consensus 371 v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~f~~l~~~~~~lS 450 (722)
T PLN02907 371 VYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLS 450 (722)
T ss_pred EEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEEEEEEcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceeecc-
Q 006869 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP- 590 (628)
Q Consensus 512 KR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~dp- 590 (628)
||++..+|++|+|.||||||+.|+++||||||+|+||++||..+|+|.+++.+++..|++++|+++++.+||.|+|+||
T Consensus 451 KR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~~a~R~~~v~~p~ 530 (722)
T PLN02907 451 KRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEG 530 (722)
T ss_pred ccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhccCCCceeEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 591 -LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 591 -~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
++++|.|+|+. ...+.+|+||+ +|++|+|+|+|+
T Consensus 531 ~v~~~i~~~~~~-~~~~~~p~hp~---~~~~g~r~~~~~ 565 (722)
T PLN02907 531 RVLLTLTDGPET-PFVRIIPRHKK---YEGAGKKATTFT 565 (722)
T ss_pred EEEEEEcCCCCC-ceeeeccCCCC---CCccceEEEEEC
Confidence 77789998863 46678999998 899999999996
No 11
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=100.00 E-value=1.1e-95 Score=810.44 Aligned_cols=352 Identities=32% Similarity=0.537 Sum_probs=337.6
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCcccHH
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 351 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~~ 351 (628)
.|+|||||||||||||||||||+|++||++||++||+|+||||||||+|+.++|+++|+++|+|||+.||+++|||+|++
T Consensus 91 ~~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDTDp~R~~~e~~~~I~edL~wLGi~~d~~~~qSd~~~ 170 (560)
T TIGR00463 91 MGEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDLDWLGVKGDEVVYQSDRIE 170 (560)
T ss_pred CCeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCcccccHHHHHHHHHHHHHcCCCCCccccccccHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCce
Q 006869 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~ 431 (628)
.||++|++||++|+||+|+||++++++.|..+|+|+||++++++++.+|++|++|.+.+|+++||+|+|+.++|++|+|+
T Consensus 171 ~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~ 250 (560)
T TIGR00463 171 EYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDW 250 (560)
T ss_pred HHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEECCCcCCCccccCc
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCC-Cccc
Q 006869 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVS-NTVM 510 (628)
Q Consensus 432 Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~-g~KL 510 (628)
|+||+...+|+++||+|++|||||||||||||+|||||||||.||++||++|.+|+.+||+..|.|+||+++..+ |.+|
T Consensus 251 V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~~h~~~l~~~~~~kL 330 (560)
T TIGR00463 251 VIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEFIHWGRLKINDVRTL 330 (560)
T ss_pred EEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeEEEEcceecCCCcEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987655 4588
Q ss_pred ccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceeecc
Q 006869 511 SKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNP 590 (628)
Q Consensus 511 SKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~dp 590 (628)
|||.....+.+|.|.||||||+.||++||++|++|+||++||..+|||.+++.+++..|++++|+.++..++|.|+|.||
T Consensus 331 skk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~~a~R~~~V~~p 410 (560)
T TIGR00463 331 STSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDPIARRYFFIWNP 410 (560)
T ss_pred cchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCcCCCceEEEcCC
Confidence 88877777777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 591 LKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 591 ~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
++|+|.|+|+. ...++|+||+ +|++|+|+|+|+
T Consensus 411 ~~v~i~~~~~~--~~~~~p~hp~---~~~~G~r~v~~~ 443 (560)
T TIGR00463 411 VKIEIEGAPEP--KIVERPLHPD---NPEVGERKLIYY 443 (560)
T ss_pred cEEEEecCCCC--eeEEccCCCC---CCCCceEEEEEC
Confidence 99999998843 4458899998 899999999996
No 12
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-82 Score=692.57 Aligned_cols=341 Identities=35% Similarity=0.486 Sum_probs=300.8
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcccHHHH
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 353 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd~~~~~ 353 (628)
|||||||||||+|||||||||++||+|||++||+|+||||||||+|+.++|+++|+++|+|||++||+ ++|||+|++.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wde~~~~QS~r~~~Y 89 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWDEGPYYQSERFDIY 89 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCCCceeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhhc----c-CC-CCCCCCCHHHHhHHHHHhhc-ccccCCCeEEEEEecCCCCCC
Q 006869 354 YELAVELIRRGHAYVDHQTPEEIKEYREK----K-MN-SPWRDRPIAESLKLFEDMRN-GRIEEGKATLRMKQDMQNDNF 426 (628)
Q Consensus 354 ~e~a~~Li~~G~AY~C~cs~eei~~~r~~----~-y~-~~~R~~~~ee~l~~f~~m~~-G~~~~g~~~lRlk~d~~~~~~ 426 (628)
+++|++||++|+||+|+||++||++.|.. . -| +.+|. +++|..|+.|.. |. ++++++|+|+|+..+++
T Consensus 90 ~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~---~~~L~~~~~~~~~~~--~~~~viR~k~~~~~~~~ 164 (472)
T COG0008 90 YEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRD---ERNLTLFEKMADLGE--GGPAVVRLKIPMAHPGP 164 (472)
T ss_pred HHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCch---hhccchHHHHhhccc--CCCeEEEEeCCCCCCCC
Confidence 99999999999999999999888888751 1 12 33333 455666778876 43 67899999999766667
Q ss_pred CCCceEEEEEecCC-CCC-CCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeee-
Q 006869 427 NMYDLIAYRIKFTP-HPH-AGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL- 503 (628)
Q Consensus 427 ~~~D~Vl~R~~~~~-h~~-~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~L- 503 (628)
.|.|+|.||+.+.+ |+. .+++|+||||||||||||||+|||||||||+||++||++|.||+++||+..|.|+|+|++
T Consensus 165 ~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~ 244 (472)
T COG0008 165 VFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLL 244 (472)
T ss_pred ccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeee
Confidence 89999999999988 888 899999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCC
Q 006869 504 NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (628)
Q Consensus 504 n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r 583 (628)
|.+|.|||||++...+....+.||+|||+.|+.+++++|++|+++..|+...|++..+..+....+..+.++.++...+|
T Consensus 245 ~~~g~kLSKr~~~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n~r 324 (472)
T COG0008 245 NEDGKKLSKRKGAVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLNPR 324 (472)
T ss_pred cCCCCeecCccCccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhhHH
Confidence 56677999999987777778999999999999999999999999999999988887777677788888999999999999
Q ss_pred cceeeccceeEEecCCC-CceeeeecccCCCCCCCCCCCceEEec
Q 006869 584 TMVVLNPLKVVITNMES-GTIMHLDAKRWPDAQADDASAFYKVIF 627 (628)
Q Consensus 584 ~~~v~dp~kl~i~n~~~-~~~~~~~~p~~p~~~~~~~~g~~~~~~ 627 (628)
.|.+ +|.++.+.|+++ .+......|+ ++++|.+.++|
T Consensus 325 y~~~-~p~e~~~~~l~~~~~~~~~~~~~------~~e~~~~~~~l 362 (472)
T COG0008 325 YMRV-DPVEVVIENLKPHLEEEGATLPL------NPEMGERVVPL 362 (472)
T ss_pred HHHh-CCHHHHHHhhhhhhhhhcccCCC------CHHHHhhhhhh
Confidence 9999 998988888764 2223334443 46777777765
No 13
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9e-81 Score=664.23 Aligned_cols=355 Identities=40% Similarity=0.701 Sum_probs=333.9
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCccc
Q 006869 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (628)
Q Consensus 270 ~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~ 349 (628)
+..|+|+|||||+|+||||||||++||+|+-||.+++|+.|+|||||||+++.++|.+.|+++|..|||+||.++|.|||
T Consensus 196 ae~GkVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNPaKE~~eFe~~IleDl~~LgIkpd~~TyTSDy 275 (712)
T KOG1147|consen 196 AEMGKVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNPAKENEEFEDVILEDLSLLGIKPDRVTYTSDY 275 (712)
T ss_pred cccCceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCCCcchhhHHHHHHHHHHHHHhCcCcceeeechhh
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCC
Q 006869 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (628)
Q Consensus 350 ~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~ 429 (628)
|+.+++++++||+.|+||+.....|+++..|..+.++.||++++|+||++|++|..|--..-..|+|.|+||+++|..|+
T Consensus 276 F~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs~~Gl~~CvRaKIdm~s~NkaMR 355 (712)
T KOG1147|consen 276 FDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGSEKGLKCCVRAKIDMSSPNKAMR 355 (712)
T ss_pred HHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccchhhhhhheeeeecccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999863323689999999999999999
Q ss_pred ceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCcc
Q 006869 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (628)
Q Consensus 430 D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~K 509 (628)
|+|+||+.-.||||+|++|.+||||||||.|.|+++||||.+|+.|++.+.+.|+|++++||+.+|..|+|+|||+.+|+
T Consensus 356 DPviYRcn~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw~i~al~LRkp~iwefsRlN~~nTv 435 (712)
T KOG1147|consen 356 DPVIYRCNPEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYWFIDALGLRKPHIWEFSRLNFVNTV 435 (712)
T ss_pred CCeeEecCCCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHHHHHHhcCCccceeehhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceeec
Q 006869 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 589 (628)
Q Consensus 510 LSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~d 589 (628)
||||+..+.|++|+|.||||||+.|+++.+|||.+.|++++|+...|-|.+..+++|..+++++++.+++.+||..|+..
T Consensus 436 LSKRKLtwfVd~GlV~GWDDPRfpTVrGv~RrGmtvEgLkqfIl~QG~Sk~v~~meWdkiWAfNKKvIDPVapRytav~~ 515 (712)
T KOG1147|consen 436 LSKRKLTWFVDEGLVDGWDDPRFPTVRGVRRRGMTVEGLKQFILAQGPSKNVVTMEWDKIWAFNKKVIDPVAPRYTAVVK 515 (712)
T ss_pred hhhhheeeeeccCcccCCCCCCcchhHHHHHcCccHHHHHHHHHHhCCccceeeeehHhhhhhcccccCCCCccceeecc
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999997
Q ss_pred ccee--EEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 590 PLKV--VITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 590 p~kl--~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
+..| .+.|-|.++.. -..|.||+ +|+.|.++|.|+
T Consensus 516 ~~~V~v~i~~~~~~~~~-~~~PkHkK---n~~lG~K~v~~~ 552 (712)
T KOG1147|consen 516 EDRVEVTITNGPQEEYI-EVSPKHKK---NPELGEKKVIYS 552 (712)
T ss_pred CceEEEecCCCCCcchh-hccccCCC---CcccCccceeec
Confidence 7654 34444443322 24567777 899999999874
No 14
>PLN02627 glutamyl-tRNA synthetase
Probab=100.00 E-value=4e-78 Score=664.53 Aligned_cols=322 Identities=22% Similarity=0.329 Sum_probs=279.8
Q ss_pred HHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-
Q 006869 264 LDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK- 342 (628)
Q Consensus 264 ~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~- 342 (628)
+..|...+.|+|||||||||||+|||||+||||+||+|||++||+|+|||||||++|++++|++.|+++|+||||+||+
T Consensus 35 ~~~~~~~~~~~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~I~~~L~WLGl~wDeg 114 (535)
T PLN02627 35 AAAAGESKGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEG 114 (535)
T ss_pred ecccccCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCcC
Confidence 4455666678899999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --------ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcc
Q 006869 343 --------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNG 406 (628)
Q Consensus 343 --------~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G 406 (628)
+++||+|++.|+++|++|+++|+||+||||++++++.|. +.|++.||+++.+++.+.+ ..|
T Consensus 115 p~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~---~~g 191 (535)
T PLN02627 115 PDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAEL---AKG 191 (535)
T ss_pred cccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHH---hCC
Confidence 489999999999999999999999999999999988774 4699999999998865422 222
Q ss_pred cccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-----cccccccchhhhhhccCCcceeecCccccccch
Q 006869 407 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRA 481 (628)
Q Consensus 407 ~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~ 481 (628)
.++++|||++. .+...+.|.|.+.+.++... .+ +| +|+||||||||||||+|||||||||+||++||+
T Consensus 192 ----~~~~iR~k~p~-~~~~~~~D~i~G~i~~~~~~-~~-D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTp 264 (535)
T PLN02627 192 ----TPYTYRFRVPK-EGSVKIDDLIRGEVSWNTDT-LG-DFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTL 264 (535)
T ss_pred ----CCceEEEEcCC-CCceEEEeeeeeeeeecccc-CC-CeEEEecCCCccccccceecccccCCcEEEechhhhcChH
Confidence 25789999863 23445566666666544331 12 33 469999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCC
Q 006869 482 SYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (628)
Q Consensus 482 ~q~~L~~aLg~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~ 560 (628)
+|.+|+++||+..|.|+|+|+ +|.+|+|||||+++ .++..||++||.|+||+||+++|||+..
T Consensus 265 kQi~ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~nyla~LGws~~ 328 (535)
T PLN02627 265 RQALIYKALGFPMPRFAHVSLILAPDRSKLSKRHGA----------------TSVGQFREMGYLPDAMVNYLALLGWNDG 328 (535)
T ss_pred HHHHHHHHcCCCCCeEEEccceeCCCCCccccccCC----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999998 68899999999986 6789999999999999999999999976
Q ss_pred CcccchhhHHHHHHhhhccCCCCcceeeccceeEEec------CCCCceeeeecccCC
Q 006869 561 DSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRWP 612 (628)
Q Consensus 561 ~~~~~~~~le~~ir~~~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~p 612 (628)
+. -++..+++++++|+.+.+++++++||+.||.|.| +|.+++.....|++.
T Consensus 329 ~~-~e~~~~~eli~~F~l~~v~~s~~~fD~~KL~wlN~~yir~l~~~el~~~~~p~l~ 385 (535)
T PLN02627 329 TE-NEIFTLEELVEKFSIDRINKSGAVFDSTKLKWMNGQHLRLLPEEELVKLVGERWK 385 (535)
T ss_pred CC-CCcCCHHHHHHhCCHhhCCCcccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 43 4678999999999999999999999999998877 677777776666653
No 15
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.2e-76 Score=640.63 Aligned_cols=289 Identities=21% Similarity=0.285 Sum_probs=264.5
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCcccHHHHHH
Q 006869 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQELYE 355 (628)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~~~~~e 355 (628)
+|||||||||+|||||+|||++||+|||++||+|+|||||||++|+.++|+++|+++|+||||+||++++||+|++.|++
T Consensus 1 ~~RFAPSPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~R~~~e~~~~I~~~L~WlGl~wDe~y~QSeR~~~Y~~ 80 (433)
T PRK12410 1 MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFGISWDKLVYQSENLKFHRQ 80 (433)
T ss_pred CCccCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCChHHHHHHHHHHHHcCCCCCCCeehhccHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCC
Q 006869 356 LAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFN 427 (628)
Q Consensus 356 ~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~ 427 (628)
+|++||++|+||+|+||++++++.|+ ++|++.||+++.++.+ . ..+++++|||++ .+...
T Consensus 81 ~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~------~----~g~~~~iR~k~p--~~~~~ 148 (433)
T PRK12410 81 MAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVL------N----CNKPFVVRLKKP--NHTMS 148 (433)
T ss_pred HHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHH------h----cCCCeEEEEEcC--CCcee
Confidence 99999999999999999999988774 4799999999887641 1 234799999997 36677
Q ss_pred CCceEEEEEecCCCCCCCCcc-----cccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCC-ceeeee
Q 006869 428 MYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP-YVWEYS 501 (628)
Q Consensus 428 ~~D~Vl~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P-~~~~~~ 501 (628)
+.|.|.|++.+.++. .++| +|+||||||||||||+|||||||||+||++||++|.+|+++||+..| .|.|+|
T Consensus 149 f~D~v~G~i~~~~~~--~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlp 226 (433)
T PRK12410 149 FTDAIKGEVSFEPDE--IDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLP 226 (433)
T ss_pred eeeccceeEEecccc--CCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEee
Confidence 889999998876543 3466 47999999999999999999999999999999999999999999864 899999
Q ss_pred e-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccC
Q 006869 502 R-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKT 580 (628)
Q Consensus 502 ~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~ 580 (628)
+ +|.+|+|||||+++ .+|.+||++||.|+||+|||+.|||+..+ +++.+++++++|+.+.
T Consensus 227 li~~~~g~KLSKR~~~----------------~~v~~~r~~G~~PeAi~n~l~~lG~~~~~---e~~~~~eli~~F~~~~ 287 (433)
T PRK12410 227 IILNEEGKKMSKRDNA----------------SSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIEK 287 (433)
T ss_pred eeeCCCCCeeecccCh----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCcc---cccCHHHHHHhCCHhh
Confidence 5 79999999999986 68999999999999999999999998753 5688999999999999
Q ss_pred CCCcceeeccceeEEec
Q 006869 581 APRTMVVLNPLKVVITN 597 (628)
Q Consensus 581 ~~r~~~v~dp~kl~i~n 597 (628)
+++++++||+.||.|.|
T Consensus 288 i~~~~~~~d~~kL~~~N 304 (433)
T PRK12410 288 ISKSPAKFDLKKLRFIN 304 (433)
T ss_pred CCCccccCCHHHHHHHH
Confidence 99999999999998887
No 16
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=100.00 E-value=1.3e-76 Score=624.39 Aligned_cols=306 Identities=30% Similarity=0.413 Sum_probs=265.6
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCC-CccCCcccHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 352 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd-~~~~qSd~~~~ 352 (628)
+|||||||||||+|||||+|||++||++||++||+|+|||||||++|+.++|+++|+++|+|||++|| ++++||+|++.
T Consensus 1 kv~tRFAPsPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~D~~~~~QS~r~~~ 80 (314)
T PF00749_consen 1 KVRTRFAPSPTGYLHIGHARTALLNYLFARKYGGKFILRIEDTDPERCRPEFYDAILEDLRWLGLEWDYGPYYQSDRLEI 80 (314)
T ss_dssp --EEEE---SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETSSTTTCHHHHHHHHHHHHHHHT---STCEEEGGGGHHH
T ss_pred CeeEeeCCCCCCCcccchhHHHHHHHHHHhccCceEEEeccccccccchhhHHHHHHhheeEEEEecCCeEEeHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998 79999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhhc--cCCCCCCCCCHHHHhHHH-HHhhcccccCCCeEEEEEecCCCCCCCCC
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLF-EDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei~~~r~~--~y~~~~R~~~~ee~l~~f-~~m~~G~~~~g~~~lRlk~d~~~~~~~~~ 429 (628)
|+++|++|+++|+||+|+||++++++.|+. +.+++++....+.++.++ ++|+.|....+++++|||+++... ..+.
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~-~~~~ 159 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESP-IAFR 159 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCC-EEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccc-cccc
Confidence 999999999999999999999999999875 556678888888888888 788888888889999999997544 7899
Q ss_pred ceEEEEEecCC---CCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeee-ecC
Q 006869 430 DLIAYRIKFTP---HPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LNV 505 (628)
Q Consensus 430 D~Vl~R~~~~~---h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~-Ln~ 505 (628)
|.|.+++.+.+ |...+.+++|+||||||||||||+|||||||||+||+++|+.|.||+++||+..|.|.|++. +|.
T Consensus 160 D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~ 239 (314)
T PF00749_consen 160 DLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNE 239 (314)
T ss_dssp ETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEET
T ss_pred cCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecC
Confidence 99999998766 44445577899999999999999999999999999999999999999999999999999874 899
Q ss_pred CCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcc
Q 006869 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTM 585 (628)
Q Consensus 506 ~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~ 585 (628)
+|+|||||+++.+ ..+..++++|++|+++.+||+.+||++... .++..++++++.|+...+++++
T Consensus 240 ~g~kLSKR~~~~~--------------i~~~~~r~~g~~~~~~l~~L~~lG~~~~~~-~e~~~~~~~~~~f~~~~~~~~~ 304 (314)
T PF00749_consen 240 DGKKLSKRKGAKS--------------IELGDYREWGDPPEATLNYLARLGWSPEAI-REFFSLDELIKQFDLSKISKSP 304 (314)
T ss_dssp TSSBSSTTCSHHB--------------HHHHHHHHTT-THHHHHHHHHHTTB-HCTH-HCHHHHHHHHHHC-GGGBHSSH
T ss_pred CCcEechhhcccc--------------ccccccccCCCCHHHHHHHHHHhcCCcchh-hhhcCHHHHHHHhhHhhccCch
Confidence 9999999999742 348899999999999999999999997544 6789999999999999999999
Q ss_pred eeeccceeEE
Q 006869 586 VVLNPLKVVI 595 (628)
Q Consensus 586 ~v~dp~kl~i 595 (628)
++||..||.|
T Consensus 305 ~~fd~~kL~w 314 (314)
T PF00749_consen 305 AVFDRKKLDW 314 (314)
T ss_dssp EEHHHHHHHH
T ss_pred HHhCHHHhCC
Confidence 9999988753
No 17
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-75 Score=635.07 Aligned_cols=308 Identities=25% Similarity=0.301 Sum_probs=268.7
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCcccHHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 353 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~~~~ 353 (628)
+|||||||||||+|||||+||||+||+|||++||+|+|||||||++|..+++.+.|+++|+|||+.||+.++||++++.|
T Consensus 2 ~vr~RFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~Rs~~~~~~~I~e~L~wLGI~~De~y~QSer~~~y 81 (445)
T PRK12558 2 TVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAEDLKWLGINWDRTFRQSDRFDRY 81 (445)
T ss_pred ceeEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccCCcccchHHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcccccCC-CeEEEEEecCCCC
Q 006869 354 YELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDMQND 424 (628)
Q Consensus 354 ~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g-~~~lRlk~d~~~~ 424 (628)
.+++++|+++|+||+|+||++++++.|. +.|++.||+++.++... ...+| ++++|||++ .+
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~--------~~~~g~~~~iR~k~~--~~ 151 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAA--------LEAEGRKPHWRFKLD--DE 151 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHh--------HHhcCCCceEEEecC--CC
Confidence 9999999999999999999999988774 36999999999877543 12234 589999974 23
Q ss_pred CCCCCceEEEEEecCCCCCCCCcc-----cccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceee
Q 006869 425 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 499 (628)
Q Consensus 425 ~~~~~D~Vl~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~ 499 (628)
...+.|.|.+.+.++... . ++| +|+||||||||||||+|+|||||||+||++||++|.||+++||+..|.|+|
T Consensus 152 ~~~~~D~i~G~~~~~~~~-~-~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H 229 (445)
T PRK12558 152 PISWDDLIRGEQSIDAAS-L-SDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAH 229 (445)
T ss_pred ceEEEEEeeeEeeccccc-C-CCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEE
Confidence 344555555555443321 1 123 359999999999999999999999999999999999999999999999999
Q ss_pred eee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhc
Q 006869 500 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (628)
Q Consensus 500 ~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~ 578 (628)
+|+ +|.+|+|||||+++ .+|.+||++||.|+||+||++.|||+..+. ++++++++++.|+.
T Consensus 230 ~pli~~~~g~KLSKR~g~----------------~sv~~~r~~G~~Peai~n~la~lG~s~~~~--e~~~~~eli~~F~l 291 (445)
T PRK12558 230 LSLLTGADGKGLSKRLGG----------------LSIRSLREDGIEPMAIASLLARLGTSDPVE--PYTSMEELAESFDL 291 (445)
T ss_pred cccccCCCcccccccCCC----------------cCHHHHHHCCCCHHHHHHHHHHHcCCCCCc--ccCCHHHHHHhCCH
Confidence 997 57899999999986 689999999999999999999999998753 66799999999999
Q ss_pred cCCCCcceeeccceeEEec------CCCCceeeeecccC
Q 006869 579 KTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (628)
Q Consensus 579 ~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (628)
+.+++++++||+.||.|.| +|.+++.....|+.
T Consensus 292 ~~~~~~~~~fd~~KL~w~N~~~i~~~~~~~l~~~~~~~~ 330 (445)
T PRK12558 292 SSFSRAPAKFDPEDLERLNARLLHALPFEAVKDRLAALG 330 (445)
T ss_pred hhCCCccccCCHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 9999999999999998887 67666655545543
No 18
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-75 Score=612.86 Aligned_cols=298 Identities=21% Similarity=0.323 Sum_probs=272.7
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC---------c
Q 006869 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 343 (628)
Q Consensus 273 ~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~---------~ 343 (628)
..|||||||||||+||+|++|||+|||+|||++||+|||||||||++|.+++..+.|.++|+|+||+||| +
T Consensus 32 ~~VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~DEgP~~gG~~GP 111 (524)
T KOG1149|consen 32 ACVRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDWDEGPGVGGPFGP 111 (524)
T ss_pred ceeEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCcccCCCcCCCCCc
Confidence 4599999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcccccCC-CeE
Q 006869 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KAT 414 (628)
Q Consensus 344 ~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g-~~~ 414 (628)
|.||+|.+.|..+|+.|++.|+||+||||++++...|. ++|++.||+++.+|... +.+.| +++
T Consensus 112 Y~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~~ei~~--------~lakg~pf~ 183 (524)
T KOG1149|consen 112 YEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCANLSDAEIKQ--------KLAKGTPFT 183 (524)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhcccCHHHHHH--------HHhcCCCee
Confidence 78999999999999999999999999999999988876 57999999999887533 22345 799
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc----cccccccchhhhhhccCCcceeecCccccccchhHHHHHHHh
Q 006869 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (628)
Q Consensus 415 lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aL 490 (628)
+|||++. ..+.+.|+|.+++........||+- +|+||||||||||||+|+|||||||+||++||.+|..||+|+
T Consensus 184 iRFrl~~--~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAf 261 (524)
T KOG1149|consen 184 IRFRLPK--ESPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAF 261 (524)
T ss_pred EEEecCC--CCCChhhhhhhhhhccccccCCCcEEEecCCCcceeeeeeecchhcchhheeecchhccccHHHHHHHHHh
Confidence 9999874 4778899999988766655555533 789999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhH
Q 006869 491 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 569 (628)
Q Consensus 491 g~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~l 569 (628)
||.+|.+-|.|+ +|.+|+|||||+|+ .++..|+++||.|+|+.|||+.+||+..... +...+
T Consensus 262 gW~pPkFaHlpLl~n~d~sKLSKRqgD----------------~~vs~~~e~G~LPeallN~ial~Gwg~~~~~-~f~sl 324 (524)
T KOG1149|consen 262 GWQPPKFAHLPLLLNPDGSKLSKRQGD----------------ASVSHYREQGYLPEALLNYIALLGWGFRTEN-EFFSL 324 (524)
T ss_pred CCCCCceeeeeeeecCCcchhhhhcCc----------------chHHHHHHcCCChHHHHHHHHHcCCCccccc-ccccH
Confidence 999999999886 69999999999997 6899999999999999999999999988763 77899
Q ss_pred HHHHHhhhccCCCCcceeeccceeEEec
Q 006869 570 EYHIREELNKTAPRTMVVLNPLKVVITN 597 (628)
Q Consensus 570 e~~ir~~~~~~~~r~~~v~dp~kl~i~n 597 (628)
++++.+|..+.+.+.++++|+.||.+.|
T Consensus 325 ~eLieqF~i~~ltk~~a~ld~ekL~~~N 352 (524)
T KOG1149|consen 325 EELIEQFSIERLTKSNAILDSEKLRFLN 352 (524)
T ss_pred HHHHHHhchhhhcccccccCHHHHHHHH
Confidence 9999999999999999999999998777
No 19
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-73 Score=627.10 Aligned_cols=308 Identities=22% Similarity=0.310 Sum_probs=268.7
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcccH
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 350 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd~~ 350 (628)
+.+|||||||||||+|||||+|||++||+|||++||+|+|||||||++|+.++|+++|+++|+||||+||+ +++||+|+
T Consensus 2 ~~~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~py~QSeR~ 81 (513)
T PRK14895 2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGEVIFQSKRN 81 (513)
T ss_pred CCCeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCCceeEeCcH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999995 89999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCC
Q 006869 351 QELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 422 (628)
Q Consensus 351 ~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~ 422 (628)
+.|+++|++|+++|+||+||||++++++.|. +.|++.||+++.++. . ..+++++|||++..
T Consensus 82 ~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~-------~----~~~~~~iR~k~p~~ 150 (513)
T PRK14895 82 NLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIY-------P----TDIKPVIRLKTPRE 150 (513)
T ss_pred HHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhh-------h----cCCCeeEEEEcCCC
Confidence 9999999999999999999999999998874 469999999876531 1 23478999999742
Q ss_pred CCCCCCCceEEEEEecCCCCCCCCcc-----cccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCce
Q 006869 423 NDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYV 497 (628)
Q Consensus 423 ~~~~~~~D~Vl~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~ 497 (628)
+...+.|.|.+.+.+.... .+ +| +|.|||||+++||||+|+|||||||+||+.++++|.+|+++||+..|.+
T Consensus 151 -~~~~~~D~v~G~~~~~~~~-~~-D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~ 227 (513)
T PRK14895 151 -GSITIHDTLQGEVVIENSH-ID-DMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSM 227 (513)
T ss_pred -CceEEEeecccceeccccc-CC-CcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeE
Confidence 3334445544444433322 11 22 3599999999999999999999999999999999999999999999999
Q ss_pred eeeeee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhh
Q 006869 498 WEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREE 576 (628)
Q Consensus 498 ~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~ 576 (628)
.|++++ |.+|.|||||+|+ .+|.+||++||.|+||+||++.|||+..+ .+++.++++++.|
T Consensus 228 ~H~plv~~~~g~KLSKR~g~----------------~~i~~~r~~G~~Peai~n~la~LG~s~~~--~e~~~~~el~~~F 289 (513)
T PRK14895 228 THIPLIHGADGAKLSKRHGA----------------LGIEAYKDMGYLPESLCNYLLRLGWSHGD--DEIISMTQAIDWF 289 (513)
T ss_pred EEEEeEEcCCCCccccccCc----------------hhHHHHHHCCCCHHHHHHHHHHhCCCCCC--cCCCCHHHHHhhC
Confidence 999985 6999999999997 57899999999999999999999999754 4678999999999
Q ss_pred hccCCCCcceeeccceeEEec------CCCCceeeeecccC
Q 006869 577 LNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (628)
Q Consensus 577 ~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (628)
+.+.+++++++||+.||.|.| +|.+++....+|++
T Consensus 290 ~~~~v~~s~~~FD~~KL~wlN~~yi~~l~~~el~~~~~~~l 330 (513)
T PRK14895 290 NLDSLGKSPSKLDFAKMNSLNAHYLRMLDNDSLTSKTVEIL 330 (513)
T ss_pred CHHhCcCCcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998888 67777666655665
No 20
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=1.5e-72 Score=567.30 Aligned_cols=238 Identities=65% Similarity=1.158 Sum_probs=229.0
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCcccHHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYFQEL 353 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~~~~ 353 (628)
+|||||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|+++|+++|+|||++||++++||+|++.|
T Consensus 1 ~v~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~~~~QS~r~~~Y 80 (238)
T cd00807 1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80 (238)
T ss_pred CceEecCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCCceecccCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceEE
Q 006869 354 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 433 (628)
Q Consensus 354 ~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl 433 (628)
++++++|+++|+||+
T Consensus 81 ~~~~~~L~~~g~aY~----------------------------------------------------------------- 95 (238)
T cd00807 81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95 (238)
T ss_pred HHHHHHHHHcCCeec-----------------------------------------------------------------
Confidence 999999999999998
Q ss_pred EEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCcccccc
Q 006869 434 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMSKR 513 (628)
Q Consensus 434 ~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~KLSKR 513 (628)
|++.|++|+++|||||||||||++|||||||||+||+++|++|.||+++||++.|.+|+|+|+|.+|+|||||
T Consensus 96 -------~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~~~~~~hln~~g~kLSKR 168 (238)
T cd00807 96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168 (238)
T ss_pred -------CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHHcCCCCCceeEEEEECCCCCCccCc
Confidence 1112345666899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCC
Q 006869 514 KLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (628)
Q Consensus 514 ~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r 583 (628)
+++++|++|.+.||||||+.++.+|+++|+.|+||++||+.||||.++..+++..|++++++.+++.++|
T Consensus 169 ~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr~~id~~~~r 238 (238)
T cd00807 169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238 (238)
T ss_pred CchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
No 21
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-72 Score=621.88 Aligned_cols=310 Identities=25% Similarity=0.323 Sum_probs=271.6
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCc--------
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI-------- 343 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~-------- 343 (628)
.++|||||||||||+|||||+|||++||+|||++||+|+|||||||++|++++|+++|+++|+||||+||+.
T Consensus 2 ~~~v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gp 81 (476)
T PRK01406 2 MMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGP 81 (476)
T ss_pred CCceeEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCc
Confidence 356999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEE
Q 006869 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATL 415 (628)
Q Consensus 344 ~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~l 415 (628)
++||+|++.|+++|++|+++|+||+||||++|+++.|. +.|++.||+++.++... .+.+| .++++
T Consensus 82 y~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~---~~~~g----~~~~i 154 (476)
T PRK01406 82 YRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAA---RLAAG----EPPVI 154 (476)
T ss_pred eehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHH---HHhCC----CCeeE
Confidence 89999999999999999999999999999999998874 46999999999887543 23333 26899
Q ss_pred EEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-----cccccccchhhhhhccCCcceeecCccccccchhHHHHHHHh
Q 006869 416 RMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (628)
Q Consensus 416 Rlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aL 490 (628)
|||++. .+...+.|.|.+++.++.... + ++ +|+|||||++|||||+|+|||||||+||+.++++|.+++++|
T Consensus 155 R~k~p~-~~~~~~~D~i~G~~~~~~~~~-~-D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~al 231 (476)
T PRK01406 155 RFKVPD-EGEVVFDDLVRGEIEFPNSEL-D-DFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEAL 231 (476)
T ss_pred EEEcCC-CCceEEEEeccceEEeccccC-C-CcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHh
Confidence 999874 345556666666665444321 2 23 469999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhH
Q 006869 491 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 569 (628)
Q Consensus 491 g~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~l 569 (628)
|+..|.+.|+++ +|.+|.|||||++. .+|.+|+++||.|+|+.||++.|||+... .+++.+
T Consensus 232 G~~~p~~~H~pli~~~~g~klSKR~g~----------------~~l~~l~~~G~~p~Ai~n~l~~lG~s~~~--~e~~~~ 293 (476)
T PRK01406 232 GWEVPVFAHLPLILGPDGKKLSKRHGA----------------TSVEQYRDMGYLPEALLNYLALLGWSHGD--QEIFSL 293 (476)
T ss_pred CCCCCeEEEeeeeeCCCCCcccCcCCc----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCc--cccCCH
Confidence 999999999987 59999999999985 68999999999999999999999999654 456889
Q ss_pred HHHHHhhhccCCCCcceeeccceeEEec------CCCCceeeeecc
Q 006869 570 EYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAK 609 (628)
Q Consensus 570 e~~ir~~~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p 609 (628)
+++++.|+...+++++++||+.||.|.| +|.+++.....|
T Consensus 294 ~~~i~~f~l~~~~~s~~~fd~~kL~~~N~~~i~~~~~~~l~~~~~~ 339 (476)
T PRK01406 294 EELIELFDLERVSKSPARFDIKKLDWLNGHYIRELDPEELAELLLP 339 (476)
T ss_pred HHHHHhcChhhCCCCCccccHHHHHHHHHHHHHhCCHHHHHHHHhH
Confidence 9999999999999999999999998887 666655555444
No 22
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=100.00 E-value=1.2e-71 Score=579.54 Aligned_cols=272 Identities=20% Similarity=0.219 Sum_probs=239.8
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcccH
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 350 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd~~ 350 (628)
..+|||||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|++.|+++|+||||+||+ ++|||+|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~QS~r~ 82 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPVLYQSQRH 82 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCceEeeccH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999996 89999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhh------ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecC---
Q 006869 351 QELYELAVELIRRGHAYVDHQTPEEIKEYRE------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDM--- 421 (628)
Q Consensus 351 ~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~--- 421 (628)
+.|++++++|+++|+||+|+||++|+++.|. +.|+++||+++.+++ .++++|||++.
T Consensus 83 ~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~--------------~~~~iRlk~~~~~~ 148 (299)
T PRK05710 83 DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPR--------------NPPAWRLRVPDAVI 148 (299)
T ss_pred HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCcccc--------------CCceEEEEcCCCce
Confidence 9999999999999999999999999988761 479999999887542 16899999871
Q ss_pred -----------CCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHh
Q 006869 422 -----------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (628)
Q Consensus 422 -----------~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aL 490 (628)
.+.+..++|||++|. + |+||||||||||||+|||||||||+||+++|+.|.||+++|
T Consensus 149 ~~~D~~~G~~~~~~~~~~~D~Vi~R~-------d-----g~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aL 216 (299)
T PRK05710 149 AFDDRLQGRQHQDLALAVGDFVLRRA-------D-----GLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLL 216 (299)
T ss_pred EEEEecceeEeeCCCCCCCCEEEEec-------C-----CCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHc
Confidence 122335666666665 3 49999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhH
Q 006869 491 GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRL 569 (628)
Q Consensus 491 g~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~l 569 (628)
|+..|.|.|+|+ +|.+|+|||||+++. +|.. .|+.|+ +.+|++.|||+.... .++..+
T Consensus 217 g~~~P~y~H~pll~~~~g~kLSKr~~~~----------------~i~~---~g~~p~-l~~~l~~lG~~~~~~-~~~~~~ 275 (299)
T PRK05710 217 GLPTPRYLHLPLVLNADGQKLSKQNGAP----------------ALDA---AGPLPV-LAAALRFLGQPPPAA-DASVEE 275 (299)
T ss_pred CCCCCeEEEeecccCCCCCcccccCCcc----------------chhh---cCcCHH-HHHHHHHcCCCCCcc-cccccc
Confidence 999999999997 599999999999873 4444 799999 999999999987643 233333
Q ss_pred --HHHHHhhhccCCCCcceeecc
Q 006869 570 --EYHIREELNKTAPRTMVVLNP 590 (628)
Q Consensus 570 --e~~ir~~~~~~~~r~~~v~dp 590 (628)
++++.+|....+++.++++.+
T Consensus 276 ~~~~~i~~f~~~~~~~~~~~~~~ 298 (299)
T PRK05710 276 LLAQAVAHWDLTRLPRQAEINPA 298 (299)
T ss_pred CHHHHHHhCCHhhCCcCCccCCC
Confidence 799999999999999888765
No 23
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=100.00 E-value=3.3e-71 Score=610.71 Aligned_cols=311 Identities=23% Similarity=0.294 Sum_probs=275.2
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCC-CccCCcccHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF-KITYTSDYFQE 352 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd-~~~~qSd~~~~ 352 (628)
+|||||||||||+|||||+||||+||+|||++||+|+|||||||++|++++|+++|+++|+||||+|| ++++||+|++.
T Consensus 1 ~v~~RfAPsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~i~~~L~wlGl~~de~~~~QS~r~~~ 80 (470)
T TIGR00464 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGLKWLGISWDEGPYYQSQRLDI 80 (470)
T ss_pred CceEeeCCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCccCChHHHHHHHHHHHHCCCCCCCCeeehhCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCC
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~ 424 (628)
|+++|++||++|+||+||||++++++.|. +.|+++||+++.+++...+. ..+++++|||+|. ..
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~-------~g~~~~iR~k~~~-~~ 152 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLA-------KGIPPVVRFKIPQ-EA 152 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHh-------cCCCceEEEEcCC-CC
Confidence 99999999999999999999999998764 47999999999887643221 1247999999985 34
Q ss_pred CCCCCceEEEEEecCCCCCCCCcc-----cccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceee
Q 006869 425 NFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE 499 (628)
Q Consensus 425 ~~~~~D~Vl~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~ 499 (628)
...|.|.|.+++.++++.. + +| +|+||||||++||||+|||||||||.||+.++++|.+|+++||+..|.+.|
T Consensus 153 ~~~~~D~~~G~~~~~~~~~-~-D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H 230 (470)
T TIGR00464 153 VVSFNDQVRGEITFQNSEL-D-DFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAH 230 (470)
T ss_pred ceeEEecccceEEecCccC-C-CeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEE
Confidence 4677888888887665432 2 34 479999999999999999999999999999999999999999999999999
Q ss_pred eee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhc
Q 006869 500 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (628)
Q Consensus 500 ~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~ 578 (628)
+++ +|.+|+|||||+|. .+|.+|+++||.|+|+.+|++.+||+.... -++...+++++.|+.
T Consensus 231 ~p~l~~~~g~kLSKR~g~----------------~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~-~e~~~~~~~i~~f~l 293 (470)
T TIGR00464 231 LPMILDEDGKKLSKRDGA----------------TSIMQFKEQGYLPEALINYLALLGWSPPDD-QEFFSLEELIEIFSL 293 (470)
T ss_pred EeeeecCCCccccccCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCc-cccCCHHHHHHhcCc
Confidence 987 68899999999985 689999999999999999999999987644 355788899999999
Q ss_pred cCCCCcceeeccceeEEec------CCCCceeeeecccC
Q 006869 579 KTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (628)
Q Consensus 579 ~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (628)
..++++.++||..||.|.| ++.+++.....|++
T Consensus 294 ~~~~~~~~~fd~~kL~~~N~~~l~~l~~~~l~~~~~~~~ 332 (470)
T TIGR00464 294 NRVSKSPAKFDWKKLQWLNAHYIKELPDEELFELLDPHL 332 (470)
T ss_pred ccCCCCCCeecHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999998777 66666665555554
No 24
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=100.00 E-value=5.2e-70 Score=550.45 Aligned_cols=238 Identities=33% Similarity=0.563 Sum_probs=228.5
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCccc--ccHHHHHHHHHHHHHcCCCCCCccCCcccHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA--EKKEYIDHIEEIVQWMGWEPFKITYTSDYFQ 351 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r--~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~~ 351 (628)
+|+|||||||||+|||||+|+|++||++||+++|+|+|||||||++| +.+++.+.|+++|+|||+.||++++||+|++
T Consensus 1 ~v~~RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~~~qS~r~~ 80 (240)
T cd09287 1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEVVIASDRIE 80 (240)
T ss_pred CceEeCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCccchhccHH
Confidence 48999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCce
Q 006869 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~ 431 (628)
.|++++++|+++|+||+
T Consensus 81 ~y~~~~~~Li~~G~aY~--------------------------------------------------------------- 97 (240)
T cd09287 81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97 (240)
T ss_pred HHHHHHHHHHHcCCccc---------------------------------------------------------------
Confidence 99999999999999997
Q ss_pred EEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCcccc
Q 006869 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTVMS 511 (628)
Q Consensus 432 Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~KLS 511 (628)
|++.|++|+++|||||||||||++|||||||||+||+++|+.|.||+++||+..|.|+|+|+++.+|+|||
T Consensus 98 ---------~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~~~Lg~~~P~~~H~pll~~~~~kLS 168 (240)
T cd09287 98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168 (240)
T ss_pred ---------CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHHHHcCCCCCcEEeeeeecCCCCeec
Confidence 11123456678999999999999999999999999999999999999999999999999999988899999
Q ss_pred cccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCC
Q 006869 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (628)
Q Consensus 512 KR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r 583 (628)
||++.++|++|.|.||||||+.|+.+||++|++|+||++|+..||||.+++.+++++|+.++|+.+++.++|
T Consensus 169 KR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r~~l~~~~~r 240 (240)
T cd09287 169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240 (240)
T ss_pred cccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
No 25
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=100.00 E-value=1.1e-69 Score=558.83 Aligned_cols=261 Identities=19% Similarity=0.179 Sum_probs=227.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcccHHHH
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQEL 353 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd~~~~~ 353 (628)
++|||||||||+|||||+|+||+||++||++||+|+|||||||++|+.++|+++|+++|+||||+||+ +++||+|++.|
T Consensus 1 ~~~RFAPSPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~~~QS~r~~~Y 80 (272)
T TIGR03838 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEVVYQSQRHALY 80 (272)
T ss_pred CeeeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeeeeCCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999997 57999999999
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhh---ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCc
Q 006869 354 YELAVELIRRGHAYVDHQTPEEIKEYRE---KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (628)
Q Consensus 354 ~e~a~~Li~~G~AY~C~cs~eei~~~r~---~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D 430 (628)
+++|++|+++|+||+||||++|+++.|. +.|++.||+ +.. ...++++++|||++. .+..+.|
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~-~~~------------~~~~~~~~~Rlk~~~--~~~~~~D 145 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRN-GLL------------GRPARPAAWRLRVPD--GVIAFDD 145 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhc-ccc------------cccCCCceEEEecCC--CCceEEE
Confidence 9999999999999999999999998842 468888997 320 123457899999873 5678899
Q ss_pred eEEEEEecCCCCCCCCccc-----ccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeee-ec
Q 006869 431 LIAYRIKFTPHPHAGDKWC-----IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSR-LN 504 (628)
Q Consensus 431 ~Vl~R~~~~~h~~~gd~~~-----~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~-Ln 504 (628)
.|.+++.++. +...++|+ |+||||||||||||+|||||||||+||+++|++|.+|+++||+..|.|.|+|+ +|
T Consensus 146 ~~~g~~~~~~-~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~ 224 (272)
T TIGR03838 146 RLQGPQQQDL-AAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVN 224 (272)
T ss_pred eeeeEEEecC-cccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhC
Confidence 9999987542 33345674 59999999999999999999999999999999999999999999999999997 59
Q ss_pred CCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 505 VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 505 ~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
.+|+|||||+++..|++ + -+++++.++++.+||++... .++++++++
T Consensus 225 ~~g~kLSKR~~~~~i~~----------------~----~~~~~~~~~l~~lG~~~~~~-~~~~~~~~~ 271 (272)
T TIGR03838 225 ADGEKLSKQNGAPALDL----------------S----HPLPALLAALRFLGLPPPPE-LAAASPAEL 271 (272)
T ss_pred CCCCeeeccCCccchhc----------------C----CcHHHHHHHHHHcCCCCCcc-cccCCHHHh
Confidence 99999999999865544 2 24689999999999987643 456666665
No 26
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=100.00 E-value=5.8e-64 Score=504.43 Aligned_cols=222 Identities=36% Similarity=0.551 Sum_probs=210.9
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcccHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 352 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd~~~~ 352 (628)
+|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPsPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~~~QS~r~~~ 80 (230)
T cd00418 1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGPYRQSDRFDL 80 (230)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCeeehhcCHHH
Confidence 379999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceE
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~V 432 (628)
|++++++|+++|
T Consensus 81 y~~~~~~L~~~g-------------------------------------------------------------------- 92 (230)
T cd00418 81 YRAYAEELIKKG-------------------------------------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHcC--------------------------------------------------------------------
Confidence 999999999999
Q ss_pred EEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeee-cCCCcccc
Q 006869 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMS 511 (628)
Q Consensus 433 l~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~L-n~~g~KLS 511 (628)
|+|||||||||||++|||||||||+||++||+.|.||+++||++.|.|+|+|++ +.+|+|||
T Consensus 93 -----------------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg~~~P~~~H~pll~~~~g~KLS 155 (230)
T cd00418 93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLEDGTKLS 155 (230)
T ss_pred -----------------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcCCCCCeEEEeeeeeCCCCCCcc
Confidence 399999999999999999999999999999999999999999999999999986 66789999
Q ss_pred cccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceeeccc
Q 006869 512 KRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPL 591 (628)
Q Consensus 512 KR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~dp~ 591 (628)
||+++ .+|.+||++|++|++|++||+.|||+.... -++..+++++++|....+++++++||+.
T Consensus 156 Kr~~~----------------~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~li~~f~~~~~~~~~~~~d~~ 218 (230)
T cd00418 156 KRKLN----------------TTLRALRRRGYLPEALRNYLALIGWSKPDG-HELFTLEEMIAAFSVERVNSADATFDWA 218 (230)
T ss_pred CcCCC----------------cCHHHHHHCCCcHHHHHHHHHHcCCCCCCC-ccccCHHHHHHhcCHhhCCCCCcccCHH
Confidence 99986 689999999999999999999999997543 3567788899999999999999999999
Q ss_pred eeEEec
Q 006869 592 KVVITN 597 (628)
Q Consensus 592 kl~i~n 597 (628)
||.+.|
T Consensus 219 kL~~~N 224 (230)
T cd00418 219 KLEWLN 224 (230)
T ss_pred HHHHHH
Confidence 998776
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4.5e-60 Score=479.38 Aligned_cols=223 Identities=26% Similarity=0.391 Sum_probs=211.8
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC---------cc
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------IT 344 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~---------~~ 344 (628)
+|+|||||||||+|||||+|+|++||++||.+||+|+|||||||++|+.++|++.|+++|+|||++||+ ++
T Consensus 1 ~v~~RfAPsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~ 80 (239)
T cd00808 1 KVRTRFAPSPTGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPY 80 (239)
T ss_pred CceEEeCCCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCE
Confidence 479999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCC
Q 006869 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (628)
Q Consensus 345 ~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~ 424 (628)
+||+|++.|++++++|+++|
T Consensus 81 ~QS~r~~~y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLEIYRKYAEKLLEKG------------------------------------------------------------ 100 (239)
T ss_pred eeeCCHHHHHHHHHHHHHcC------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred CCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeee-
Q 006869 425 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL- 503 (628)
Q Consensus 425 ~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~L- 503 (628)
+ |+|||+|++||||++|||||||||+||+.++++|.||+++||++.|.|+|++++
T Consensus 101 -------------------d-----g~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~~aLg~~~p~~~h~pll~ 156 (239)
T cd00808 101 -------------------D-----GFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLPLIL 156 (239)
T ss_pred -------------------C-----CCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHHHHcCCCCCceEeecccc
Confidence 2 499999999999999999999999999999999999999999999999999985
Q ss_pred cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCC
Q 006869 504 NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPR 583 (628)
Q Consensus 504 n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r 583 (628)
|.+|.|||||+++ .+|++||++|+.|++|++|++.+|++..+. .++..+++++++|+...+++
T Consensus 157 ~~~g~KLSKR~~~----------------~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~-~~~~~~~~l~~~f~~~~~~~ 219 (239)
T cd00808 157 NPDGKKLSKRKGD----------------TSISDYREEGYLPEALLNYLALLGWSPPDG-EEFFTLEELIELFDLERVSK 219 (239)
T ss_pred CCCCCcccCCCCC----------------ccHHHHHHCCCCHHHHHHHHHHcCCCCCCC-CCcCCHHHHHhcCCHhhCCc
Confidence 9999999999997 699999999999999999999999997754 35678899999999999999
Q ss_pred cceeeccceeEEec
Q 006869 584 TMVVLNPLKVVITN 597 (628)
Q Consensus 584 ~~~v~dp~kl~i~n 597 (628)
++++||+.||.+.|
T Consensus 220 ~~~~~d~~kL~~~n 233 (239)
T cd00808 220 SPAIFDPEKLDWLN 233 (239)
T ss_pred CcCcCCHHHHHHHH
Confidence 99999999987665
No 28
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=100.00 E-value=1.5e-50 Score=388.08 Aligned_cols=163 Identities=50% Similarity=0.810 Sum_probs=137.1
Q ss_pred CChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchhHHHHHHhhCC
Q 006869 7 GDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSK 86 (628)
Q Consensus 7 ~~~~~~~~~f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~~l~~~I~~gk 86 (628)
|+.+++++||++|||+|+||+||+||++++++|.++|++++..++||+++|+|||+|||+++++..+||++|++||++|+
T Consensus 1 ~s~eel~~lF~~iGL~e~kAket~KN~kls~~L~~iI~ea~~~~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gk 80 (164)
T PF04558_consen 1 MSEEELIELFKSIGLSEKKAKETLKNKKLSASLKAIINEAGVDSGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIVDGK 80 (164)
T ss_dssp --HHHHHHHHHHTT--HHHHHHHTTSHHHHHHHHHHHHTS-TT----HHHHHHHHHHHHHHTT---TTHHHHHHHHHTTS
T ss_pred CChHHHHHHHHHcCCChhhHHHHHhCHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHhCC
Confidence 67899999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccc-cchhhhHHHHHhhCCC
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYR-TNVGDLFAHVRKRLPW 165 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~-~n~g~ll~~vr~~LkW 165 (628)
|+|++||+||++|+++++..++|+++||++|||||+||+|||+++|++||++|+++|+++||+ ||+|.+++++|..|||
T Consensus 81 lkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I~~~V~~~i~~~k~~i~~~Ry~~~~~~~~~~k~~~~LkW 160 (164)
T PF04558_consen 81 LKTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQIEAAVEKYIEENKEEILEKRYRLFNIGLLLVKVRPSLKW 160 (164)
T ss_dssp --SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHHHHHHHHHHHHTHHHHHHHGGGGHHHHHHHHHT-GGGTT
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHHHHHHHHHHHHhHHHHHHHHhccCchhhHHHHHhccCCC
Confidence 999999999999999998668999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CChh
Q 006869 166 ADPK 169 (628)
Q Consensus 166 Ad~~ 169 (628)
||||
T Consensus 161 Ad~k 164 (164)
T PF04558_consen 161 ADGK 164 (164)
T ss_dssp S-T-
T ss_pred CCCC
Confidence 9986
No 29
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=8.5e-28 Score=260.43 Aligned_cols=251 Identities=18% Similarity=0.215 Sum_probs=185.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcCCC-C
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE-P 340 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLGl~-p 340 (628)
.|+++.+.||||+|++++-.++.| .|..+|+.+|+|+|.+ ...+.|+++++++++.||+. |
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 688889999999999987665555 3336899999999963 13567899999999999995 6
Q ss_pred CCccCCcccHHHHHHHHHHHHHcCCccccC-CCHH-HHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEE
Q 006869 341 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (628)
Q Consensus 341 d~~~~qSd~~~~~~e~a~~Li~~G~AY~C~-cs~e-ei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk 418 (628)
+..++.|+|++.+.+++++||++|+||+-. .+.. ++..+ +.|....+..+. +++..|. |..
T Consensus 109 ~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f--~~YG~LS~~~~l-------e~l~~ga--------r~~ 171 (464)
T COG0215 109 DIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF--KDYGKLSGRDSL-------EELQAGA--------RVE 171 (464)
T ss_pred cccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccc--hhhHhhcCCCCh-------hHHhhcc--------ccc
Confidence 888999999999999999999999999862 2222 22222 223322211122 2344443 333
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhh----------hhhccCCcceeecCccccccchhHHHHH
Q 006869 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 487 (628)
Q Consensus 419 ~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvirG~e~~~~~~~q~~L~ 487 (628)
++ ..+.+..||||||...+.+|.|.+|| .|+|+||..|+ +|-|-.|+++++ -|+.+.-.| +
T Consensus 172 ~~--~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiF---PHHENEiAQ---s 243 (464)
T COG0215 172 VD--EEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF---PHHENEIAQ---S 243 (464)
T ss_pred cc--cccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccC---CCcccHHHH---H
Confidence 33 23566699999999999999999999 89999999998 455555555554 233333333 3
Q ss_pred H-HhC-CCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCccc
Q 006869 488 H-ALG-LYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 564 (628)
Q Consensus 488 ~-aLg-~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~ 564 (628)
+ +.| -+...||.| ++++++|+||||+.|+ ++|++++.+. |.|+.+|.||++-+|+..-. +
T Consensus 244 ea~~g~~~~a~yWmH~G~l~i~geKMSKSLGN---------------fiti~d~l~~-~~p~~lR~~lls~HYR~pl~-f 306 (464)
T COG0215 244 EAATGVKPFAKYWMHNGFLNIDGEKMSKSLGN---------------FITVRDLLKK-YDPEVLRLFLLSSHYRSPLD-F 306 (464)
T ss_pred HhhhCCCcceeEeEEcceeeecCcCcccccCC---------------eeEHHHHHhh-cCHHHHHHHHHHHHhCCccc-c
Confidence 3 356 355899998 6899999999999998 5899999998 99999999999999987543 3
Q ss_pred chhhHHHH
Q 006869 565 RLDRLEYH 572 (628)
Q Consensus 565 ~~~~le~~ 572 (628)
+-+.|+++
T Consensus 307 see~L~~A 314 (464)
T COG0215 307 SEELLEEA 314 (464)
T ss_pred CHHHHHHH
Confidence 33445544
No 30
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.94 E-value=7.4e-27 Score=242.19 Aligned_cols=250 Identities=18% Similarity=0.228 Sum_probs=161.4
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcCCCC-
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEP- 340 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLGl~p- 340 (628)
.|+++.+.||||+|++++-.++.| .+..+++++|+|+|.+ .....|++.++++|+.||+.+
T Consensus 15 GPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p 94 (300)
T PF01406_consen 15 GPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP 94 (300)
T ss_dssp EEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999987655555 6777899999999953 125688999999999999986
Q ss_pred CCccCCcccHHHHHHHHHHHHHcCCccccC-CCHH-HHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEE
Q 006869 341 FKITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (628)
Q Consensus 341 d~~~~qSd~~~~~~e~a~~Li~~G~AY~C~-cs~e-ei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk 418 (628)
+..+++|++++.+.+++++|+++|+||.-. .+.. ++.+. +.|. .++.. ..++|..|...+
T Consensus 95 ~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~--~~YG----~Ls~~----~~~~l~~~~~~~-------- 156 (300)
T PF01406_consen 95 DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKF--PDYG----KLSNQ----DLEDLEAGARVE-------- 156 (300)
T ss_dssp SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGS--TTTT----TTTT-----SHHHHHHCHHHT--------
T ss_pred ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccc--cccc----ccccc----chhhHHhhhhcc--------
Confidence 568899999999999999999999999865 2211 11111 2233 22221 123444443211
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhh----------hhhccCCcceeecCccccccchhHHHHH
Q 006869 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLL 487 (628)
Q Consensus 419 ~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvirG~e~~~~~~~q~~L~ 487 (628)
....+.+..||+|||.....++.|.++| .|+|+||+.|+ +|-|.-|+++++. |+.+.-.| +
T Consensus 157 --~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FP---HHENEiAq---s 228 (300)
T PF01406_consen 157 --VDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFP---HHENEIAQ---S 228 (300)
T ss_dssp --T-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTT---HHHHHHHH---H
T ss_pred --cccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCC---CccchHHH---H
Confidence 1235667799999999877778899999 89999999997 4444445555442 33333333 3
Q ss_pred HH-hCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccc
Q 006869 488 HA-LGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (628)
Q Consensus 488 ~a-Lg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~ 565 (628)
++ .|-..+.+|.| ++|+++|+||||+.++ ++||+++.++ |+|.++|.||++-.|+..-. ++
T Consensus 229 ~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN---------------~~~i~dll~~-~~~~~lR~~~l~~hYr~~l~-~s 291 (300)
T PF01406_consen 229 EAATGKPFANYWMHNGHLNVDGEKMSKSLGN---------------FITIRDLLKK-YSPDALRLFLLSTHYRKPLN-FS 291 (300)
T ss_dssp HHHHSS-SEEEEEEE--EEETTCE--TTTT------------------BHHHHHTT-S-HHHHHHHHHTS-TTS-EE-E-
T ss_pred HHhhCchHHHHHHHHHHHhhcCccccccCCC---------------EEEHHHHhhc-CCHHHHHHHHhcCCCCCccc-cC
Confidence 43 47778889998 6899999999999998 5899999976 99999999999999987543 55
Q ss_pred hhhHHHH
Q 006869 566 LDRLEYH 572 (628)
Q Consensus 566 ~~~le~~ 572 (628)
.+.|+++
T Consensus 292 ~~~l~~A 298 (300)
T PF01406_consen 292 EENLEEA 298 (300)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5666654
No 31
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.92 E-value=1.6e-24 Score=240.03 Aligned_cols=253 Identities=17% Similarity=0.207 Sum_probs=184.1
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCccc-------------ccHHHHHHHHHHHHHcCCC
Q 006869 278 RFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEA-------------EKKEYIDHIEEIVQWMGWE 339 (628)
Q Consensus 278 RFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~r-------------~~~~~~~~I~~~L~wLGl~ 339 (628)
-..|+|+|++||||+|+++..+.++| .++..|+.++||+|++- ....|.+.+.+++++||+.
T Consensus 26 vcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~ 105 (465)
T TIGR00435 26 VCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVL 105 (465)
T ss_pred EecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44789999999999999999999988 78899999999998632 2468899999999999999
Q ss_pred CCC-ccCCcccHHHHHHHHHHHHHcCCccccC-CCHH-HHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEE
Q 006869 340 PFK-ITYTSDYFQELYELAVELIRRGHAYVDH-QTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLR 416 (628)
Q Consensus 340 pd~-~~~qSd~~~~~~e~a~~Li~~G~AY~C~-cs~e-ei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lR 416 (628)
++. .+..|+|.+.+++++++|+++|+||.+. .+.. ++... +.|. .++. . ..++|..|. |
T Consensus 106 ~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~--~~yG----~ls~-~---~~~~~~~~~--------~ 167 (465)
T TIGR00435 106 PPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF--KDYG----KLSK-Q---DLDQLEAGA--------R 167 (465)
T ss_pred CCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc--chhc----cCCC-C---CHHHHhccc--------c
Confidence 766 5689999999999999999999999764 2110 11111 2232 2221 1 113344443 2
Q ss_pred EEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhh----------hhhccCCcceeecCccccccchhHHH
Q 006869 417 MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFW 485 (628)
Q Consensus 417 lk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvirG~e~~~~~~~q~~ 485 (628)
...+ ..+.+..||++|+.....++.|.++| .|.|+||+.|+ +|-|..|+.|++- |+.+...|
T Consensus 168 ~~~~--~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fp---Hhene~aq-- 240 (465)
T TIGR00435 168 VDVD--EAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFP---HHENEIAQ-- 240 (465)
T ss_pred cCcc--cccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccc---hHHHHHHH--
Confidence 2222 34666799999999877778899999 79999999998 5555556665542 23332222
Q ss_pred HHHH-hCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcc
Q 006869 486 LLHA-LGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSL 563 (628)
Q Consensus 486 L~~a-Lg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~ 563 (628)
..+ .|...+.+|.| ++++.+|.|||||+|+ .+++..+.+. |.|+++|.|+++.+++..- .
T Consensus 241 -s~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN---------------~i~~~dll~~-~~~dalR~~ll~~~~~~~l-~ 302 (465)
T TIGR00435 241 -SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGN---------------FFTVRDVLKN-YDPEILRYFLLSVHYRSPL-D 302 (465)
T ss_pred -HHHhcCCCCCcEEEEeeEEEecCccccccCCC---------------cCCHHHHHHH-CCHHHHHHHHHhCCCCCCC-c
Confidence 223 47667778876 6799999999999998 4789999887 9999999999987765432 3
Q ss_pred cchhhHHHHH
Q 006869 564 IRLDRLEYHI 573 (628)
Q Consensus 564 ~~~~~le~~i 573 (628)
++...|+++.
T Consensus 303 fs~~~l~~a~ 312 (465)
T TIGR00435 303 FSEELLEAAK 312 (465)
T ss_pred cCHHHHHHHH
Confidence 5555555554
No 32
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.92 E-value=5.8e-24 Score=235.71 Aligned_cols=255 Identities=18% Similarity=0.210 Sum_probs=183.2
Q ss_pred CCeeEEE-eCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCccc-------------ccHHHHHHHHHH
Q 006869 272 GGNVLTR-FPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEA-------------EKKEYIDHIEEI 332 (628)
Q Consensus 272 ~~~v~tR-FaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDtD~~r-------------~~~~~~~~I~~~ 332 (628)
++.|... .+|+|+|++||||+|++++.+.+||. ++..|+..+||+|+.- ....|.+.+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455555 69999999999999999999999885 7889999999998632 256889999999
Q ss_pred HHHcCC-CCCCccCCcccHHHHHHHHHHHHHcCCcccc-----CCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcc
Q 006869 333 VQWMGW-EPFKITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNG 406 (628)
Q Consensus 333 L~wLGl-~pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C-----~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G 406 (628)
+++||+ .||..++.|+|.+.+++++++|+++|+||.+ ||... . +.|.... .+.. ++|..|
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~----~--~~yg~ls-~~~~-------~~~~~~ 166 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK----F--PDYGKLS-GRNL-------DELQAG 166 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc----c--cccccCC-CCCH-------HHHhcc
Confidence 999999 5677778899999999999999999999954 33221 1 2343211 2222 344444
Q ss_pred cccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhh----------hhhccCCcceeecCcc
Q 006869 407 RIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLE 475 (628)
Q Consensus 407 ~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvirG~e 475 (628)
. |.. ....+.+..||+|||.....++.|.++| .|.|+||..|+ +|-|..|+.|++ -
T Consensus 167 ~--------~~~--~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~Dlif---p 233 (463)
T PRK00260 167 A--------RVE--VAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIF---P 233 (463)
T ss_pred C--------cCC--cccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCC---C
Confidence 2 332 2334677799999999877778888999 78999999994 333444444332 1
Q ss_pred ccccchhHHHHHHH-hCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHH
Q 006869 476 FETRRASYFWLLHA-LGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 553 (628)
Q Consensus 476 ~~~~~~~q~~L~~a-Lg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~ 553 (628)
|+.+.-.| ..+ .|.+.+.+|.| ++++.+|.|||||+|+ .+++.++.+. |.|+++|.|++
T Consensus 234 Hh~neiaq---s~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN---------------~i~~~dll~~-~~~d~lR~~ll 294 (463)
T PRK00260 234 HHENEIAQ---SEAATGKPFANYWMHNGFVTVNGEKMSKSLGN---------------FFTIRDLLKK-YDPEVLRFFLL 294 (463)
T ss_pred chHhHHHH---HHHhcCCCcceEEEEccEEccCCCcccCcCCC---------------CCCHHHHHHH-cCchHhHHHHH
Confidence 44333222 223 46455668887 5789999999999998 4788898886 99999999999
Q ss_pred HcCCCCCCcccchhhHHHHH
Q 006869 554 GIGISRSDSLIRLDRLEYHI 573 (628)
Q Consensus 554 ~lG~t~~~~~~~~~~le~~i 573 (628)
+..+... -.++...|+++.
T Consensus 295 ~~~~~~~-~~fs~~~l~~a~ 313 (463)
T PRK00260 295 SAHYRSP-LNFSEEALEQAK 313 (463)
T ss_pred hCCCCCC-CccCHHHHHHHH
Confidence 7665532 234444455443
No 33
>PLN02946 cysteine-tRNA ligase
Probab=99.91 E-value=7.7e-25 Score=244.75 Aligned_cols=252 Identities=14% Similarity=0.122 Sum_probs=186.5
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcCCCC-
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEP- 340 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLGl~p- 340 (628)
.|+|+|++||||+|++++-++++| .+...|+.+|||+|.+ .....|.+.++++++.||+.+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p 166 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPP 166 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 799999999999999998877777 5677899999999853 235688999999999999964
Q ss_pred CCccCCcccHHHHHHHHHHHHHcCCccccCCCHH-HHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEe
Q 006869 341 FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQ 419 (628)
Q Consensus 341 d~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~e-ei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~ 419 (628)
+..+..|+|++.+.+++++|+++|+||.-.-+.. ++.++ +.|. .++.. ..++|..|. |+..
T Consensus 167 ~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f--~~YG----~Ls~~----~l~~l~~g~--------rv~~ 228 (557)
T PLN02946 167 SVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKF--PEYG----KLSGR----KLEDNRAGE--------RVAV 228 (557)
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcc--hhhh----hcCCC----ChhHhhcCC--------CCCc
Confidence 4578899999999999999999999995321110 11111 2233 22211 123455553 3332
Q ss_pred cCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhh----------hhhccCCcceeecCccccccchhHHHHHH
Q 006869 420 DMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASYFWLLH 488 (628)
Q Consensus 420 d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvirG~e~~~~~~~q~~L~~ 488 (628)
...+.+..||+|||...+.++.|.++| .|+|+||+.|+ +|-|..||.+++- |+.+.-.|- ..
T Consensus 229 --~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FP---HHENEiAQs--ea 301 (557)
T PLN02946 229 --DSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFP---HHENEIAQS--CA 301 (557)
T ss_pred --ccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCC---cccchHHHH--HH
Confidence 235677799999999876678899999 89999999998 7777788887773 444444442 12
Q ss_pred HhCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchh
Q 006869 489 ALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (628)
Q Consensus 489 aLg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~ 567 (628)
+.|.....||.| ++++++|.|||||.|+ ++|+.++.+. |.|+++|.||++-+++..- .++.+
T Consensus 302 ~~g~~~a~yW~H~G~v~~~G~KMSKSlGN---------------~itl~dll~~-y~~dalR~~lLs~hyr~~l-~fs~e 364 (557)
T PLN02946 302 ACCDSNISYWIHNGFVTVDSEKMSKSLGN---------------FFTIRQVIDL-YHPLALRLFLLGTHYRSPI-NYSDV 364 (557)
T ss_pred HhCCCCCceeeEeeEEEeCCCCcCCcCCC---------------cCCHHHHHHh-cCccceeeeeeccCCCCCc-EecHH
Confidence 356556668877 7899999999999998 4799999987 9999999999987777543 35555
Q ss_pred hHHHHH
Q 006869 568 RLEYHI 573 (628)
Q Consensus 568 ~le~~i 573 (628)
.|++..
T Consensus 365 ~L~~a~ 370 (557)
T PLN02946 365 QLESAS 370 (557)
T ss_pred HHHHHH
Confidence 555553
No 34
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=2.9e-24 Score=236.76 Aligned_cols=249 Identities=14% Similarity=0.151 Sum_probs=187.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecC----------Ccc-------------cccHHHHHHHHH
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 331 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDt----------D~~-------------r~~~~~~~~I~~ 331 (628)
.|++++++||||+|++++-++++| .+...|+++|+|+ |++ .....|.+.+++
T Consensus 28 GpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~ 107 (481)
T PRK14534 28 GPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFD 107 (481)
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 678889999999999998777776 5667899999999 642 235678899999
Q ss_pred HHHHcCCCCCC-ccCCcccHHHHHHHHHHHHHcCCccc-----cCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhh-
Q 006869 332 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR- 404 (628)
Q Consensus 332 ~L~wLGl~pd~-~~~qSd~~~~~~e~a~~Li~~G~AY~-----C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~- 404 (628)
+++.||+.++. .+.+|+|++.+.+++++|+++|+||. +||... + +.|.... .+.. ++|.
T Consensus 108 d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~----~--~~YG~ls-~~~l-------~~l~~ 173 (481)
T PRK14534 108 DCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC----F--KSYGQMA-GINL-------NDFKD 173 (481)
T ss_pred HHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc----c--cchhhhc-CCCH-------HHHhh
Confidence 99999998764 55789999999999999999999994 333322 1 2233211 1222 2332
Q ss_pred -cccccCCCeEEEEEecCCCCCCCCCceEEEEEe---cCCCCCCCCcc-cccccccchhh----------hhhccCCcce
Q 006869 405 -NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIK---FTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITH 469 (628)
Q Consensus 405 -~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~---~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~ITh 469 (628)
.|. |+.. ...+.+..||++|+.. .+.++.|.++| .|+|+||..|+ +|-|..|+.+
T Consensus 174 ~~~~--------~v~~--~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~Dl 243 (481)
T PRK14534 174 MSVS--------RVEI--DKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDH 243 (481)
T ss_pred hccC--------cCCc--ccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEeccccc
Confidence 222 2322 2346677999999974 45567788999 89999999998 6778888888
Q ss_pred eecCccccccchhHHHHHHHhCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHH
Q 006869 470 SLCTLEFETRRASYFWLLHALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSI 548 (628)
Q Consensus 470 virG~e~~~~~~~q~~L~~aLg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI 548 (628)
++ -|+.+...|-. -+.|...+.+|.| ++++++|.|||||.|+ ++|+.+|.+.|+.|+++
T Consensus 244 iF---PHHene~Aqs~--a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN---------------~i~l~dll~~~~~~~al 303 (481)
T PRK14534 244 IG---VHHINEIAIAE--CYLNKKWCDMFVHGEFLIMEYEKMSKSNNN---------------FITIKDLEDQGFSPLDF 303 (481)
T ss_pred CC---CcchhHHHHHh--hhcCCCcceEEEEecEEEecCceecccCCC---------------cccHHHHHhcCCChhHH
Confidence 76 35555555521 1247778889998 5899999999999998 48999999999999999
Q ss_pred HHHHHHcCCCCCCcccchhhHHHHH
Q 006869 549 NAFVQGIGISRSDSLIRLDRLEYHI 573 (628)
Q Consensus 549 ~~fl~~lG~t~~~~~~~~~~le~~i 573 (628)
|.|+++..++..-. ++.+.|+++.
T Consensus 304 R~~lls~~yr~~l~-Fs~e~l~~a~ 327 (481)
T PRK14534 304 RYFCLTAHYRTQLK-FTFNNLKACK 327 (481)
T ss_pred HHHHHhCCCCCCCC-CCHHHHHHHH
Confidence 99999888876543 6667777664
No 35
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=7.1e-24 Score=234.62 Aligned_cols=249 Identities=17% Similarity=0.219 Sum_probs=185.2
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecC----------Ccc-------------cccHHHHHHHHH
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 331 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDt----------D~~-------------r~~~~~~~~I~~ 331 (628)
.|++++++||||+|+++.-.+++| .+...|+.+|+|+ |+. .....|.+.+++
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~ 109 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFR 109 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 788999999999999988777777 4667899999999 643 235678889999
Q ss_pred HHHHcCCCC-CCccCCcccHHHHHHHHHHHHHcCCccc-----cCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhc
Q 006869 332 IVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 405 (628)
Q Consensus 332 ~L~wLGl~p-d~~~~qSd~~~~~~e~a~~Li~~G~AY~-----C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~ 405 (628)
+++.||+.+ +..++.++|++.+.+++++|+++|+||. +||... + +.|.. ...+.. ++|..
T Consensus 110 d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----~--~~YG~-Ls~~~~-------~~l~~ 175 (490)
T PRK14536 110 DTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----F--PSYGS-LASAAV-------EDLQA 175 (490)
T ss_pred HHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc----c--cchhh-hcCCCH-------HHhhc
Confidence 999999986 4567899999999999999999999994 333311 1 22321 112222 34444
Q ss_pred ccccCCCeEEEEEecCCCCCCCCCceEEEEEec--CC-CCCCCCcc-cccccccchhh----------hhhccCCcceee
Q 006869 406 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKF--TP-HPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSL 471 (628)
Q Consensus 406 G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~--~~-h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvi 471 (628)
|. |+.. ...+.+..||+||+... .. ++.|.++| .|+|+||+.|+ +|-|..|+.+++
T Consensus 176 g~--------~v~~--~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliF 245 (490)
T PRK14536 176 GA--------RIEH--DTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIR 245 (490)
T ss_pred CC--------cCCC--CCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCC
Confidence 43 2222 23566779999999753 22 46788999 79999999998 466777777665
Q ss_pred cCccccccchhHHHHHHH-hCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHH
Q 006869 472 CTLEFETRRASYFWLLHA-LGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSIN 549 (628)
Q Consensus 472 rG~e~~~~~~~q~~L~~a-Lg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~ 549 (628)
-|+.+...| ..+ .|...+.+|.| ++++++|.|||||.|+ ++|+..|.+.||.|+++|
T Consensus 246 ---PHHeneiAq---s~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN---------------~itl~dll~~g~~~~alR 304 (490)
T PRK14536 246 ---VHHTNEIAQ---CEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQ---------------FLTLSSLQEKGFQPLDYR 304 (490)
T ss_pred ---cchhhHHHH---HHHhcCCCcceEEEEcCEEeecCccccccCCC---------------cccHHHHHhcCCCHHHHH
Confidence 344454444 233 47777889998 5799999999999998 489999999999999999
Q ss_pred HHHHHcCCCCCCcccchhhHHHHHH
Q 006869 550 AFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 550 ~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
.|+++-.++..-. ++.+.|+++.+
T Consensus 305 ~~lls~~yr~~l~-Fs~e~l~~a~~ 328 (490)
T PRK14536 305 FFLLGGHYRSQLA-FSWEALKTAKA 328 (490)
T ss_pred HHHHhCCCCCCCC-CCHHHHHHHHH
Confidence 9999988876543 56666666544
No 36
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.91 E-value=3.5e-24 Score=230.88 Aligned_cols=257 Identities=15% Similarity=0.066 Sum_probs=184.6
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcCC-C
Q 006869 279 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGW-E 339 (628)
Q Consensus 279 FaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLGl-~ 339 (628)
..|+|+|++||||+|+++.-.+++| .+...|+..+||+|.+ .....|.+.++++++.||+ .
T Consensus 15 CGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~ 94 (384)
T PRK12418 15 CGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLP 94 (384)
T ss_pred cCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3789999999999999998877777 4567899999999853 2356788899999999997 6
Q ss_pred CCCccCCcccHHHHHHHHHHHHHcCCccccCC----CHH-HHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 340 PFKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 340 pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C~c----s~e-ei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
|+..++.|++++.+.+++++|+++|+||.-.. +.. ++.+. +.|... .++.. ++|..|. +
T Consensus 95 ~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~l-s~~~~-------~~~~~~~---~--- 158 (384)
T PRK12418 95 PRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDAT--PQFGYE-SGYDR-------ATMLELF---A--- 158 (384)
T ss_pred CCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCch--hhcccc-cCCCH-------HHHHhhh---c---
Confidence 78888999999999999999999999996432 111 11111 223321 12223 2333210 0
Q ss_pred EE-EEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhh----------hhhccCCcceeecCccccccchh
Q 006869 415 LR-MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRAS 482 (628)
Q Consensus 415 lR-lk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvirG~e~~~~~~~ 482 (628)
-| ...+ ...+.+..||+|||...+.++.|.++| .|+|+||+.|+ +|-|.-|+++++. |+.+.-.
T Consensus 159 ~~~~~~~-~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FP---HHeneia 234 (384)
T PRK12418 159 ERGGDPD-RPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFP---HHEFSAA 234 (384)
T ss_pred ccccCcc-cccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccc---hhHhHHH
Confidence 01 0111 124667799999999877678899999 89999999997 5666666666653 3333333
Q ss_pred HHHHHHH-hCC-CCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCC
Q 006869 483 YFWLLHA-LGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 559 (628)
Q Consensus 483 q~~L~~a-Lg~-~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~ 559 (628)
| ..+ .|- +.+.+|.| ++|+.+|.|||||.|+ ++++..+.+.|+.|.++|.||++-.++.
T Consensus 235 q---~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~ell~~G~d~~~lR~~lls~~yr~ 296 (384)
T PRK12418 235 H---AEAATGERRFARHYVHAGMIGLDGEKMSKSRGN---------------LVFVSRLRAAGVDPAAIRLALLAGHYRA 296 (384)
T ss_pred H---HHHhcCCCCcceEEEECCEECCCCCcccCcCCC---------------cCCHHHHHhccCChhheeEEEeccCCCC
Confidence 3 233 454 67789999 5799999999999998 4788888888999999999998777765
Q ss_pred CCcccchhhHHHHHH
Q 006869 560 SDSLIRLDRLEYHIR 574 (628)
Q Consensus 560 ~~~~~~~~~le~~ir 574 (628)
.-. ++.+.|+++.+
T Consensus 297 ~l~-fs~e~l~~a~~ 310 (384)
T PRK12418 297 DRE-WTDAVLAEAEA 310 (384)
T ss_pred Ccc-cCHHHHHHHHH
Confidence 433 45555655533
No 37
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=3.7e-23 Score=233.08 Aligned_cols=246 Identities=15% Similarity=0.167 Sum_probs=183.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcCCCCC
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEPF 341 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLGl~pd 341 (628)
.|+|++++||||+|++++-++++| .+...|+..|||+|.+ .....|.+.+.++++.||+.++
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p 334 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP 334 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 688889999999999998777777 4567899999999853 2356788999999999999865
Q ss_pred C-ccCCcccHHHHHHHHHHHHHcCCccc------cCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 342 K-ITYTSDYFQELYELAVELIRRGHAYV------DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 342 ~-~~~qSd~~~~~~e~a~~Li~~G~AY~------C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
. .+..|+|++.+.+++++|+++|+||. +||.. .+ +.|.... .+.. ++|..|.
T Consensus 335 ~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~----~f--~~YG~LS-~~~~-------~~l~~g~------- 393 (699)
T PRK14535 335 DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVR----EF--AAYGQLS-GKSL-------DDLRAGE------- 393 (699)
T ss_pred cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecc----cc--ccccccc-CCCh-------HHhcCCC-------
Confidence 4 67889999999999999999999994 23332 11 2333221 1222 3455443
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhh----------hhhccCCcceeecCccccccchhH
Q 006869 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFETRRASY 483 (628)
Q Consensus 415 lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvirG~e~~~~~~~q 483 (628)
|+..+ ..+.+..||+|||...+.++.|.++| .|+|+||+.|+ +|-|..||.+++- |+.+.-.|
T Consensus 394 -rve~d--~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFP---HHENEiAQ 467 (699)
T PRK14535 394 -RVEVD--GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFP---HHENEIAQ 467 (699)
T ss_pred -ccccc--cccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCC---CCccHHHH
Confidence 33332 34667799999999877778899999 89999999998 6777778887773 45554444
Q ss_pred HHHHHH-hCC----------------CCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCH
Q 006869 484 FWLLHA-LGL----------------YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS 545 (628)
Q Consensus 484 ~~L~~a-Lg~----------------~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~p 545 (628)
- ++ .|. ....||.| +++.++|.|||||.|+ .+++..+.+. |.|
T Consensus 468 s---eA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN---------------~it~~dlLe~-ygp 528 (699)
T PRK14535 468 S---VGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGN---------------FFTIREVLKQ-YDP 528 (699)
T ss_pred H---HHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCC---------------cCCHHHHHHh-CCH
Confidence 2 23 343 24568888 7889999999999998 4789998886 999
Q ss_pred HHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 546 TSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 546 eaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
+++|.||++-++...-. ++...|+++
T Consensus 529 dalRl~lLsshYRspL~-fS~e~Le~A 554 (699)
T PRK14535 529 EVVRFFILRAHYRSPLN-YSDAHLDDA 554 (699)
T ss_pred HHHHHHHHcCCCCCCCC-cCHHHHHHH
Confidence 99999999877665432 444555554
No 38
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.90 E-value=4.8e-24 Score=231.03 Aligned_cols=255 Identities=15% Similarity=0.066 Sum_probs=180.2
Q ss_pred eCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcCCC-
Q 006869 279 FPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE- 339 (628)
Q Consensus 279 FaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLGl~- 339 (628)
..|+|++++||||+|++++..+++| .+...|+..+||+|.+ .....|...+.++++.||+.
T Consensus 42 CGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~ 121 (411)
T TIGR03447 42 CGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLP 121 (411)
T ss_pred eCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3789999999999999998888877 5667899999999853 23467888999999999986
Q ss_pred CCCccCCcccHHHHHHHHHHHHHcCCccccCC----CHH-HHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 340 PFKITYTSDYFQELYELAVELIRRGHAYVDHQ----TPE-EIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 340 pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C~c----s~e-ei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
|+..++.|++++.+.+++++|+++|+||.-.. +.. ++.+. +.|.... ++..+ +|..|. +
T Consensus 122 ~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~--~~YG~Ls-~~~~~-------~~~~~~---~--- 185 (411)
T TIGR03447 122 PRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT--EQFGYES-GYDRA-------TMLELF---A--- 185 (411)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch--hcccccc-CCCHH-------HHHhhh---c---
Confidence 77888999999999999999999999996432 111 11111 2233221 22232 233210 0
Q ss_pred EE-EEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhhh----------hhccCCcceeecCccccccchh
Q 006869 415 LR-MKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI----------VDSIENITHSLCTLEFETRRAS 482 (628)
Q Consensus 415 lR-lk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~V----------DD~~~~IThvirG~e~~~~~~~ 482 (628)
-| ...+ ...+.+..||+|||.....++.|.++| .|+|+||+.|++ |-|.-|+++++. |+.+.-.
T Consensus 186 ~~~~~~~-~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifp---Hheneia 261 (411)
T TIGR03447 186 ERGGDPD-RPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFP---HHEFSAA 261 (411)
T ss_pred ccccCcc-cccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCccccccc---chHhHHH
Confidence 01 1111 124667799999999877778899999 899999999974 333334444331 2222211
Q ss_pred HHHHHHH-hCC-CCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCC
Q 006869 483 YFWLLHA-LGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 559 (628)
Q Consensus 483 q~~L~~a-Lg~-~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~ 559 (628)
| ..+ .|. +.+.+|.| ++++.+|+||||+.|+ ++++..+.+.|+.|+++|.||++-.++.
T Consensus 262 q---~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN---------------~i~~~dl~~~g~dp~~lRl~lls~~Yr~ 323 (411)
T TIGR03447 262 H---AEAATGVRRMARHYVHAGMIGLDGEKMSKSLGN---------------LVFVSKLRAAGVDPAAIRLGLLAGHYRQ 323 (411)
T ss_pred H---HHHhcCCCCcceEEEECCEECcCCCCccCcCCC---------------CCCHHHHHhcCCCcccEEEEEecCCCCC
Confidence 2 223 455 67889999 5899999999999998 4789999999999999999998777776
Q ss_pred CCcccchhhHHHH
Q 006869 560 SDSLIRLDRLEYH 572 (628)
Q Consensus 560 ~~~~~~~~~le~~ 572 (628)
.-. ++...|+++
T Consensus 324 pl~-fs~e~l~~a 335 (411)
T TIGR03447 324 DRD-WTDAVLAEA 335 (411)
T ss_pred CCc-cCHHHHHHH
Confidence 433 444455544
No 39
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.87 E-value=3.9e-22 Score=228.27 Aligned_cols=262 Identities=13% Similarity=0.166 Sum_probs=180.7
Q ss_pred EEEe--CCCCCCcCchhHHHHHHHHHHHHH------HcCCEEEEeeecCCcc--------------cccHHHHHHHHHHH
Q 006869 276 LTRF--PPEPNGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPE--------------AEKKEYIDHIEEIV 333 (628)
Q Consensus 276 ~tRF--aPsPtG~LHIGharaal~n~l~Ar------~~~G~~iLRidDtD~~--------------r~~~~~~~~I~~~L 333 (628)
|+=| .|+++++.||||+|++++.++++| .|...|+++|+|+|.+ .....|.+.+++++
T Consensus 61 v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~ 140 (651)
T PTZ00399 61 VRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDM 140 (651)
T ss_pred eEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 4445 577779999999999998777666 3457899999999853 12357889999999
Q ss_pred HHcCCCC-CCccCCcccHHHHHHHHHHHHHcCCccccCCCHH-HHHHHhh--ccCCCCCCCCCHHHHhHHHHHhhccccc
Q 006869 334 QWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYRE--KKMNSPWRDRPIAESLKLFEDMRNGRIE 409 (628)
Q Consensus 334 ~wLGl~p-d~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~e-ei~~~r~--~~y~~~~R~~~~ee~l~~f~~m~~G~~~ 409 (628)
+.||+.+ +.+++.|+|++.+.+++++|+++|+||.-..+.. ++.++.. ..|. .++++. ....+.|..|.
T Consensus 141 ~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg----~L~p~~-~~~~~~~~~g~-- 213 (651)
T PTZ00399 141 KALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP----KLEPES-VADEDRIAEGE-- 213 (651)
T ss_pred HHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHH----hhChhh-cCCHHHHhccc--
Confidence 9999975 5688899999999999999999999996432211 2222211 1122 233211 11112233332
Q ss_pred CCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhh----------hhhccCCcceeecCccccc
Q 006869 410 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHC----------IVDSIENITHSLCTLEFET 478 (628)
Q Consensus 410 ~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~----------VDD~~~~IThvirG~e~~~ 478 (628)
.. +. +....+.+..||++|++..+.+|.|.++| .|.|+||..|+ +|-|..||.+++- |+.
T Consensus 214 ---~~--l~-~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FP---HHe 284 (651)
T PTZ00399 214 ---GA--LG-KVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFP---HHD 284 (651)
T ss_pred ---CC--cc-ccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCC---cch
Confidence 11 11 11124556699999999888888899999 79999999886 4445555555442 333
Q ss_pred cchhHHHHHHH-hCC-CCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHc
Q 006869 479 RRASYFWLLHA-LGL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGI 555 (628)
Q Consensus 479 ~~~~q~~L~~a-Lg~-~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~l 555 (628)
+.-.| .+| .|- ..+.+|.| ++++++|.|||||.|+ ..|+..+.+. |.|+++|.||++-
T Consensus 285 NEiAQ---seA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGN---------------fItp~dlLek-ygaDaLR~~lLs~ 345 (651)
T PTZ00399 285 NELAQ---SEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKN---------------FITIRQALSK-YTARQIRLLFLLH 345 (651)
T ss_pred hHHHH---HHHhhCCCCCCcEEEEEEEEEeccchhhhcCCC---------------cccHHHHHHH-cChHHHHHHHHhc
Confidence 33323 223 343 56789998 8999999999999998 4789998888 9999999999876
Q ss_pred CCCCCCcccchhhHHHHH
Q 006869 556 GISRSDSLIRLDRLEYHI 573 (628)
Q Consensus 556 G~t~~~~~~~~~~le~~i 573 (628)
.|...- .++...+.++.
T Consensus 346 ~~~~dl-dFS~e~l~~a~ 362 (651)
T PTZ00399 346 KWDKPM-NYSDESMDEAI 362 (651)
T ss_pred CCCCCC-ccCHHHHHHHH
Confidence 666532 35666665553
No 40
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.3e-22 Score=216.23 Aligned_cols=260 Identities=14% Similarity=0.147 Sum_probs=181.3
Q ss_pred CcHHHHHHhhhhcCCeeEEEeCCCC--CCcCchhHHHHHHHHHHHHH------HcCCEEEEeeecCCcc---ccc-----
Q 006869 259 NTKEVLDKHLEVTGGNVLTRFPPEP--NGYLHIGHAKAMFVDFGLAK------ERGGYCYLRYDDTNPE---AEK----- 322 (628)
Q Consensus 259 ~~~~~~~~h~~~~~~~v~tRFaPsP--tG~LHIGharaal~n~l~Ar------~~~G~~iLRidDtD~~---r~~----- 322 (628)
||....++-+.-.+|+-+|-|.+.| +...||||||+++--.++-| .|+..|+++|+|+|.+ |..
T Consensus 39 NslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~ 118 (586)
T KOG2007|consen 39 NSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMG 118 (586)
T ss_pred eccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhc
Confidence 5444443333334455578885555 57799999999975444444 5788999999999964 211
Q ss_pred ----------HHHHHHHHHHHHHcCCCC-CCccCCcccHHHHHHHHHHHHHcCCccccCCCHH-HHHHHhhccCCCCCCC
Q 006869 323 ----------KEYIDHIEEIVQWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYVDHQTPE-EIKEYREKKMNSPWRD 390 (628)
Q Consensus 323 ----------~~~~~~I~~~L~wLGl~p-d~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~e-ei~~~r~~~y~~~~R~ 390 (628)
..|++.+..|+..|++-| +-.++-|+|++++..+++++|++|.||+-..+.. ++. .++..|..
T Consensus 119 e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~-----kf~~~YgK 193 (586)
T KOG2007|consen 119 EKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVD-----KFPHSYGK 193 (586)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecc-----cccchhhh
Confidence 136789999999999864 6688999999999999999999999998754433 111 12222323
Q ss_pred CCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhhh---------
Q 006869 391 RPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI--------- 460 (628)
Q Consensus 391 ~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~V--------- 460 (628)
+.-+. +.+..| +|+.+ + +.+.+..||+||+.+++.+|.|.++| .|.|+||+.|++
T Consensus 194 L~G~~-----~~~~~g---Eg~l~-----d--s~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~ 258 (586)
T KOG2007|consen 194 LVGQR-----KNLQEG---EGVLS-----D--SRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQ 258 (586)
T ss_pred hcCch-----hhcccC---cCccc-----c--ccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccc
Confidence 32110 223333 23333 1 34566689999999999999999999 899999999984
Q ss_pred -hhccCCcceeecCccccccchhHHHHHH-HhCCC-CCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHH
Q 006869 461 -VDSIENITHSLCTLEFETRRASYFWLLH-ALGLY-QPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLA 536 (628)
Q Consensus 461 -DD~~~~IThvirG~e~~~~~~~q~~L~~-aLg~~-~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~ 536 (628)
|-|-.||+..+ .|+.|.-.| ++ +..-. ..+||-| |||.+.|.||||+.++ +.||+
T Consensus 259 lDIH~GG~DL~F---PHHeNEiAQ---~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkN---------------FiTIk 317 (586)
T KOG2007|consen 259 LDIHGGGIDLAF---PHHENEIAQ---SEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKN---------------FITIK 317 (586)
T ss_pred cceecCcccccC---CCcccHHHH---HHHHhcCCccceeEEEcCeeeeccchhhhhhcc---------------ceeHH
Confidence 44444444433 133333333 22 23322 4567777 8999999999999998 58999
Q ss_pred HHHHcCCCHHHHHHHHHHcCCCCC
Q 006869 537 GLRRRGVTSTSINAFVQGIGISRS 560 (628)
Q Consensus 537 ~lr~~G~~peaI~~fl~~lG~t~~ 560 (628)
...+. |+|.++|-||++-.|...
T Consensus 318 e~Lk~-~sp~qLRl~fl~~~wr~~ 340 (586)
T KOG2007|consen 318 EALKK-YSPRQLRLAFLLHQWRSP 340 (586)
T ss_pred HHHHh-cCHHHHHHHHHHHHhcCc
Confidence 98887 999999999999888754
No 41
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.78 E-value=2.9e-18 Score=171.83 Aligned_cols=183 Identities=19% Similarity=0.119 Sum_probs=140.2
Q ss_pred EEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc------------cccHHHHHHHHHHHHHcC
Q 006869 276 LTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE------------AEKKEYIDHIEEIVQWMG 337 (628)
Q Consensus 276 ~tRF-aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~------------r~~~~~~~~I~~~L~wLG 337 (628)
+.=| +|+|||++||||+|++++...+|| .++..+.--++|.+.+ .....+.+.+.+++++||
T Consensus 3 ~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~ 82 (212)
T cd00671 3 LVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLD 82 (212)
T ss_pred EEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344 899999999999999998777777 3444444455566532 335567788899999999
Q ss_pred CCCCCccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEE
Q 006869 338 WEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRM 417 (628)
Q Consensus 338 l~pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRl 417 (628)
+.+|...+.|++...+.+.++.|+++|.+|.-. |...+.+
T Consensus 83 i~~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~----------------------------------------g~~~~~~ 122 (212)
T cd00671 83 VRFDVWFGESSYLGLMGKVVELLEELGLLYEED----------------------------------------GALWLDL 122 (212)
T ss_pred CcCceecchhhhhhHHHHHHHHHHHCCCEEEeC----------------------------------------CcEEEec
Confidence 999988888888888889999999999998411 0000111
Q ss_pred EecCCCCCCCCCceEEEEEecCCCCCCCCccccccccc---chhhhhhccCCccee--ecCccccccchhHHHHHHHhCC
Q 006869 418 KQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LCTLEFETRRASYFWLLHALGL 492 (628)
Q Consensus 418 k~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~---fa~~VDD~~~~IThv--irG~e~~~~~~~q~~L~~aLg~ 492 (628)
+ .+ ....|+|+.|. +| .|+|+ +|+.++++.+++||+ |+|.|+..+.+++..++++||+
T Consensus 123 --~-~~--~~~~d~vl~rs-------dG-----~~~Y~~~DlA~~~~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 123 --T-EF--GDDKDRVLVRS-------DG-----TYTYFTRDIAYHLDKFERGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred --h-hh--CCCCCeEEEEC-------CC-----CccchHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 0 00 12368999998 66 99999 688899999999999 8999999999999999999998
Q ss_pred C-CCceeee--eeecC-CCcccccccc
Q 006869 493 Y-QPYVWEY--SRLNV-SNTVMSKRKL 515 (628)
Q Consensus 493 ~-~P~~~~~--~~Ln~-~g~KLSKR~~ 515 (628)
. .|.+.|. +++.. +|.|||||+|
T Consensus 186 ~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 186 DEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred CCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 6 6666664 66554 4999999985
No 42
>PF04557 tRNA_synt_1c_R2: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 ; InterPro: IPR007638 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a region found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=99.65 E-value=3.6e-17 Score=140.70 Aligned_cols=82 Identities=39% Similarity=0.479 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHhcCCCchhhhhhhhhhhhhhhhcCCCc--chhhhcccCCCCCCCCccccCCCCCCCCCCCCccccccc
Q 006869 170 IVKQLIDARMYELLGERTAADIEKLSKKKEKKEKKEKPE--KDEDKKFANDAPVQLPEEDLFPISNFPPPEENYKVHTEI 247 (628)
Q Consensus 170 ~vK~~vd~~~~~llgpk~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (628)
+||++||.||++||||||++|+++++|+++++.+..... ..........+.++|++||++. ++||+|||||+
T Consensus 1 avK~evD~qil~LLGPKteaD~~k~~K~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~-~~fHkPGEN~k----- 74 (84)
T PF04557_consen 1 AVKNEVDAQILELLGPKTEADLVKKKKKKKKKKKKAKKKKKEAKANAEEESERAMFEEGFLGD-LHFHKPGENYK----- 74 (84)
T ss_dssp -HHHHHHHHHHHHH-S--GGG-----------------------------------------------------------
T ss_pred CcHHHHHHHHHHHhCCCccccccCCCCCCCCCcccccccccccccccCCCCCccchhhhhhcc-cCCCCccccCC-----
Confidence 589999999999999999999998866643321111001 1111122345678999999997 88999999965
Q ss_pred ccCCCccccccCcHHHHHHh
Q 006869 248 PFSDGSVLICCNTKEVLDKH 267 (628)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~h 267 (628)
+||+.+|.+|
T Consensus 75 ----------pqt~~~L~~h 84 (84)
T PF04557_consen 75 ----------PQTMPLLKKH 84 (84)
T ss_dssp --------------------
T ss_pred ----------cchHHHHhcC
Confidence 4567788776
No 43
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.64 E-value=1.1e-15 Score=171.67 Aligned_cols=211 Identities=20% Similarity=0.226 Sum_probs=148.8
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCCE---EEEeeecCCc-------------ccccHHHHHHHHHH
Q 006869 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGGY---CYLRYDDTNP-------------EAEKKEYIDHIEEI 332 (628)
Q Consensus 272 ~~~v~tRF-aPsPtG~LHIGharaal~n~l~Ar~--~~G~---~iLRidDtD~-------------~r~~~~~~~~I~~~ 332 (628)
+++|+.-| +|+|||+|||||+|++++.+.+||. +.|. ++.-++|.+. .+..+.+.+.|.++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888 9999999999999999998888883 4454 5555577763 34567888999999
Q ss_pred HHHcCCCCCCccCCcccH--HHHHHHHHHHHHcCCcc-ccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhccccc
Q 006869 333 VQWMGWEPFKITYTSDYF--QELYELAVELIRRGHAY-VDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIE 409 (628)
Q Consensus 333 L~wLGl~pd~~~~qSd~~--~~~~e~a~~Li~~G~AY-~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~ 409 (628)
+++||+.+|...+.|+.+ +.+.+..+.|.++|.+| .- +
T Consensus 190 l~~LgI~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~---------------~------------------------ 230 (507)
T PRK01611 190 LDRLGVHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVES---------------D------------------------ 230 (507)
T ss_pred HHHcCCeeeEEeecCcchhcchHHHHHHHHHHCCCEEEee---------------C------------------------
Confidence 999999998655555433 35667888999999998 31 0
Q ss_pred CCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCC---ccee--ecCccccccchhHH
Q 006869 410 EGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIEN---ITHS--LCTLEFETRRASYF 484 (628)
Q Consensus 410 ~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~---IThv--irG~e~~~~~~~q~ 484 (628)
|...+++ + ..+. -.|+|++|. +| .|||.... +--|... .+++ |.|.|+..+-.+..
T Consensus 231 -Ga~~~~~--~-~~~~--~~~~vl~ks-------dG-----~~~Y~t~D-ia~~~~k~~~~d~~i~V~g~~q~~hf~~~~ 291 (507)
T PRK01611 231 -GALWVRL--T-EFGD--DKDRVLIKS-------DG-----TYTYFTRD-IAYHLYKFERFDRVIYVVGADHHGHFKRLK 291 (507)
T ss_pred -CcEEEEc--h-hhCC--CCCeEEEEC-------CC-----CccchHHH-HHHHHHHHhhcCEEEEEECCChHHHHHHHH
Confidence 0011111 1 0111 148999998 56 77886443 2222222 3455 68999999999999
Q ss_pred HHHHHhCCCCC--ceeee---ee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCH-------------
Q 006869 485 WLLHALGLYQP--YVWEY---SR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTS------------- 545 (628)
Q Consensus 485 ~L~~aLg~~~P--~~~~~---~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~p------------- 545 (628)
.++++||+..+ ..|.| ++ ++.+|.|||||+|+. .++.+|.++++..
T Consensus 292 ~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~---------------i~l~dll~~a~g~~~~~~~~~~~a~~ 356 (507)
T PRK01611 292 AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNV---------------VTLDDLLDEAVGRARELIEEKEIAEA 356 (507)
T ss_pred HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCce---------------eEHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999997644 22443 44 466889999999983 6888888886666
Q ss_pred ---HHHHHHHHHc
Q 006869 546 ---TSINAFVQGI 555 (628)
Q Consensus 546 ---eaI~~fl~~l 555 (628)
.|++.|+.+.
T Consensus 357 vgidAiR~~~L~~ 369 (507)
T PRK01611 357 VGIDAVRYFDLSR 369 (507)
T ss_pred hccceeEehhhhc
Confidence 7788877654
No 44
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.58 E-value=6.1e-14 Score=157.33 Aligned_cols=270 Identities=17% Similarity=0.069 Sum_probs=154.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCc-------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDtD~-------------~r~~~~~~~~I~~~L~wL 336 (628)
++|==+|+|||.+||||+|+.+..+.++|. ++..|+..+||.|. ......|.+.|.++|+.|
T Consensus 4 ~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 83 (511)
T PRK11893 4 YITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEAL 83 (511)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345558999999999999999988888883 45678888888864 234567889999999999
Q ss_pred CCCCCCccCCcc--cHHHHHHHHHHHHHcCCccc----------c--CCCHHHHHHHhhccCCCCCCCCCH------HH-
Q 006869 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV----------D--HQTPEEIKEYREKKMNSPWRDRPI------AE- 395 (628)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~----------C--~cs~eei~~~r~~~y~~~~R~~~~------ee- 395 (628)
|+.+|..++.++ +.+...+...+|.++|++|. | +++..++.. +. +..+|..++ ++
T Consensus 84 ~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~---~~-p~~~~~~~~~~~~~~~~~ 159 (511)
T PRK11893 84 NISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIE---DG-YRCPPTGAPVEWVEEESY 159 (511)
T ss_pred CCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcC---CC-CCCCCCCCcceEEecCeE
Confidence 999887555555 78888899999999999984 2 333334321 11 111111110 00
Q ss_pred --HhHHHHHhhcccccCCCeEEEEEecC------CCCCCCCCceEEEE-EecCCCCCCCC------cc-c---------c
Q 006869 396 --SLKLFEDMRNGRIEEGKATLRMKQDM------QNDNFNMYDLIAYR-IKFTPHPHAGD------KW-C---------I 450 (628)
Q Consensus 396 --~l~~f~~m~~G~~~~g~~~lRlk~d~------~~~~~~~~D~Vl~R-~~~~~h~~~gd------~~-~---------~ 450 (628)
.+..|.+.....+..+.. ++..+. ..-+....|+.++| ...=..+..++ -| + +
T Consensus 160 f~~l~~~~~~l~~~~~~~~~--~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~ 237 (511)
T PRK11893 160 FFRLSKYQDKLLELYEANPD--FIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALG 237 (511)
T ss_pred EEEcHHHHHHHHHHHHhCCC--ccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhc
Confidence 011111100000101000 000000 00012357888888 32101111111 24 1 2
Q ss_pred ccc----------ccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceee-eeeecCCCcccccccccccc
Q 006869 451 YPS----------YDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWE-YSRLNVSNTVMSKRKLNFLV 519 (628)
Q Consensus 451 ~Pt----------Y~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~-~~~Ln~~g~KLSKR~~~~lv 519 (628)
+|. +.+ ..|-|.+|+.++. .+......+..+++...|..|. ++++..+|.|||||+|+.
T Consensus 238 ~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~------~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~-- 307 (511)
T PRK11893 238 YPDDEELLAELFNKYW--PADVHLIGKDILR------FHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNV-- 307 (511)
T ss_pred cccccccchhHHHhcC--CCcceEecccccc------cchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcE--
Confidence 221 001 1233344443321 1222222334456777786654 578888999999999983
Q ss_pred cccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHH
Q 006869 520 TNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 520 ~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
.++.++.+. |.++++|.|++..+-...+..++...+.+.++
T Consensus 308 -------------i~~~dll~~-~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~ 348 (511)
T PRK11893 308 -------------IDPFDLVDE-YGVDAVRYFLLREIPFGQDGDFSREAFINRIN 348 (511)
T ss_pred -------------EcHHHHHHH-cCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHH
Confidence 678888887 99999999999875433444566666655443
No 45
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.48 E-value=9e-13 Score=139.35 Aligned_cols=242 Identities=18% Similarity=0.163 Sum_probs=138.6
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc------c--------------------ccHHHH
Q 006869 278 RFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE------A--------------------EKKEYI 326 (628)
Q Consensus 278 RFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~------r--------------------~~~~~~ 326 (628)
==+|+|||.+||||+++.++-+.++| .+...|+.-+|+.+.. + -..++.
T Consensus 6 ~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (312)
T cd00668 6 TPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMS 85 (312)
T ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHH
Confidence 34799999999999999887777777 3445566777665421 1 134677
Q ss_pred HHHHHHHHHcCCCCC--C--ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHH
Q 006869 327 DHIEEIVQWMGWEPF--K--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFED 402 (628)
Q Consensus 327 ~~I~~~L~wLGl~pd--~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~ 402 (628)
+.|.++++.||+..| . .+...+|.+...+...+|.++|++|.-.-.. +. -..-+-..+ +-.-.+.+.
T Consensus 86 ~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------~~--~~~~f~~~~-~l~~~~~~~ 156 (312)
T cd00668 86 GEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------RI--TEQWFFDMP-KFKEKLLKA 156 (312)
T ss_pred HHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------Ee--eeeEEEEcH-HHHHHHHHH
Confidence 889999999999765 4 3444566777778889999999999733211 00 000000000 000011122
Q ss_pred hhcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhcc---C--------------
Q 006869 403 MRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSI---E-------------- 465 (628)
Q Consensus 403 m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~---~-------------- 465 (628)
+..+...+. +.+.....--.+..|+.+.|... || .+.|++++-|=.|-++ +
T Consensus 157 ~~~~~~~p~----~~~~~~~~~l~~~~d~~isR~~~-----WG---~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~ 224 (312)
T cd00668 157 LRRGKIVPE----HVKNRMEAWLESLLDWAISRQRY-----WG---TPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDS 224 (312)
T ss_pred HhcCCcCCh----HHHHHHHHHHhCCCCeEEeccCC-----CC---CcCCcccccchhhccHHHHHHcCCCccchhhhhc
Confidence 222211000 00000000000123888887521 33 4577777777222111 0
Q ss_pred -CcceeecCcccc-ccchhHHHHHHHhCCC--CCceeeeeeecCCC-cccccccccccccccccCCCCCcchhhHHHHHH
Q 006869 466 -NITHSLCTLEFE-TRRASYFWLLHALGLY--QPYVWEYSRLNVSN-TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 540 (628)
Q Consensus 466 -~IThvirG~e~~-~~~~~q~~L~~aLg~~--~P~~~~~~~Ln~~g-~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~ 540 (628)
..+--+=|.|+. .+.......+.+++.+ ...+|.|++++.+| .|||||+|+ ..++..+.+
T Consensus 225 ~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn---------------~v~~~d~~~ 289 (312)
T cd00668 225 YPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN---------------VIDPSDVVE 289 (312)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC---------------cCCHHHHHH
Confidence 111112355554 3333333334566644 33567788887776 999999998 368888888
Q ss_pred cCCCHHHHHHHHHHcC
Q 006869 541 RGVTSTSINAFVQGIG 556 (628)
Q Consensus 541 ~G~~peaI~~fl~~lG 556 (628)
. +.++++|.||+..+
T Consensus 290 ~-~~~da~R~~l~~~~ 304 (312)
T cd00668 290 K-YGADALRYYLTSLA 304 (312)
T ss_pred H-cCcHHHHHHHHhcC
Confidence 7 99999999998755
No 46
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.45 E-value=2.1e-13 Score=128.14 Aligned_cols=133 Identities=21% Similarity=0.158 Sum_probs=99.9
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHHc-----CCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCcccH
Q 006869 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKER-----GGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF 350 (628)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~l~Ar~~-----~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~ 350 (628)
++.++|+|||.+||||+|++++.+.+||.+ +..++..+||.|.....+....
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~----------------------- 57 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK----------------------- 57 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-----------------------
Confidence 367899999999999999999999888865 8999999999996554332211
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCc
Q 006869 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (628)
Q Consensus 351 ~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D 430 (628)
.++.+++.. .+...|.+...
T Consensus 58 -------------------~~~~~~~~~----------------~~~~~~~~~~~------------------------- 77 (143)
T cd00802 58 -------------------GENAKAFVE----------------RWIERIKEDVE------------------------- 77 (143)
T ss_pred -------------------CCCHHHHHH----------------HHHHHHHHHHH-------------------------
Confidence 122222111 11111111100
Q ss_pred eEEEEEecCCCCCCCCcccccccccchhhhhhccCCc---ceeecCccccccchhHHHHHHHhCCC-CCceeeeeeecC-
Q 006869 431 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENI---THSLCTLEFETRRASYFWLLHALGLY-QPYVWEYSRLNV- 505 (628)
Q Consensus 431 ~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~I---ThvirG~e~~~~~~~q~~L~~aLg~~-~P~~~~~~~Ln~- 505 (628)
|++.+++|+...++ |+.++|.|+..+...+.+++++++.. .|...+|+++..
T Consensus 78 -----------------------y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~ 134 (143)
T cd00802 78 -----------------------YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA 134 (143)
T ss_pred -----------------------HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC
Confidence 99999999999999 99999999999999999999999875 577777888766
Q ss_pred CCccccccc
Q 006869 506 SNTVMSKRK 514 (628)
Q Consensus 506 ~g~KLSKR~ 514 (628)
+|.|||||+
T Consensus 135 ~g~KmSks~ 143 (143)
T cd00802 135 DGTKMSKSK 143 (143)
T ss_pred CCCcCCCCC
Confidence 569999995
No 47
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.34 E-value=4.2e-11 Score=127.21 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=73.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCc-------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDtD~-------------~r~~~~~~~~I~~~L~wL 336 (628)
++|==+|.|||.+||||+++.++.+.++|. +...|+..+||.+. ....+.+.+.|.++++.|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 344457999999999999999998888883 34567777888753 234667889999999999
Q ss_pred CCCCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
|+.+|..++.++ +.+...+..++|.++|.+|.
T Consensus 83 gI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~ 116 (319)
T cd00814 83 NISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYE 116 (319)
T ss_pred CCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 999886544444 66667788899999999984
No 48
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.31 E-value=1.6e-11 Score=123.60 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=43.3
Q ss_pred CCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCC
Q 006869 491 GLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 559 (628)
Q Consensus 491 g~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~ 559 (628)
|-+.+.+|.+ +.++.+|.|||||+|+ ..++.++.+. |.|+++|.|++.-.+..
T Consensus 155 g~~~~~~~~h~~~v~~~g~KMSKs~Gn---------------~v~~~dll~~-~~~da~R~~~l~~~~~~ 208 (213)
T cd00672 155 GKPFARYWLHTGHLTIDGEKMSKSLGN---------------FITVRDALKK-YDPEVLRLALLSSHYRS 208 (213)
T ss_pred CCCCCcEEEEEEEEeccCcchhhcCCC---------------ccCHHHHHHH-cCHHHHHHHHHhCCcCC
Confidence 5456778887 5689999999999998 3688888885 99999999998766543
No 49
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.27 E-value=6.3e-11 Score=133.99 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=74.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCc-------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDtD~-------------~r~~~~~~~~I~~~L~wL 336 (628)
++|--+|.|||.+||||+++.+..+.+||. ++..|+.-+||.+. ......+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 567789999999999999999998888873 33456777777653 334667889999999999
Q ss_pred CCCCCCccCCcc--cHHHHHHHHHHHHHcCCcc
Q 006869 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAY 367 (628)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY 367 (628)
|+.+|..++.++ |.+...+...+|.++|.+|
T Consensus 82 gI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 82 NISFDRFIRTTDEEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred CCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999886444344 7777788899999999988
No 50
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.20 E-value=1.7e-10 Score=131.16 Aligned_cols=93 Identities=20% Similarity=0.207 Sum_probs=73.5
Q ss_pred eEEEeCCCCCCcCchhHHHHH-HHHHHHHHH-----cCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHH
Q 006869 275 VLTRFPPEPNGYLHIGHAKAM-FVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQW 335 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaa-l~n~l~Ar~-----~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~w 335 (628)
++|==+|.|||.|||||+++. +..+.+||. ++..|+.-+||.+.. ....+|.+.|.++++.
T Consensus 6 ~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 85 (556)
T PRK12268 6 LITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKK 85 (556)
T ss_pred EEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 455557999999999999998 877777772 345566667776532 2346788999999999
Q ss_pred cCCCCCCccCCc--ccHHHHHHHHHHHHHcCCcc
Q 006869 336 MGWEPFKITYTS--DYFQELYELAVELIRRGHAY 367 (628)
Q Consensus 336 LGl~pd~~~~qS--d~~~~~~e~a~~Li~~G~AY 367 (628)
||+.+|..++.+ +|.+...+...+|.++|++|
T Consensus 86 l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 86 LGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred cCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeE
Confidence 999998766666 77888888899999999998
No 51
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.18 E-value=4.1e-10 Score=120.78 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=70.7
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeec----CCcc--------------------------cccHH
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDD----TNPE--------------------------AEKKE 324 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidD----tD~~--------------------------r~~~~ 324 (628)
||+|||.+||||+++.++.+.++|. +...|+..+|| |+.. ....+
T Consensus 9 pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T cd00818 9 PPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALR 88 (338)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHH
Confidence 7999999999999999988888883 34557777777 4321 12346
Q ss_pred HHHHHHHHHHHcCC--CCCC--ccCCcccHHHHHHHHHHHHHcCCccccC
Q 006869 325 YIDHIEEIVQWMGW--EPFK--ITYTSDYFQELYELAVELIRRGHAYVDH 370 (628)
Q Consensus 325 ~~~~I~~~L~wLGl--~pd~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~ 370 (628)
|.+.|.++++.||+ +|+. .+...+|.+...+...+|+++|++|.-.
T Consensus 89 ~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~ 138 (338)
T cd00818 89 YVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGY 138 (338)
T ss_pred HHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccC
Confidence 67889999999999 5554 4556688888889999999999999643
No 52
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.17 E-value=2.7e-10 Score=128.27 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=65.0
Q ss_pred cCCcceeecCccccc-cchhHHHHHH-HhCCCCCceeeeeeecCC-CcccccccccccccccccCCCCCcchhhHHHHHH
Q 006869 464 IENITHSLCTLEFET-RRASYFWLLH-ALGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 540 (628)
Q Consensus 464 ~~~IThvirG~e~~~-~~~~q~~L~~-aLg~~~P~~~~~~~Ln~~-g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~ 540 (628)
..||+..+.|.||.. +...+..+++ .||...|...+|+++..+ |.|||||+|+. .++..+.+
T Consensus 232 ~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~---------------i~~~d~l~ 296 (510)
T PRK00750 232 ALGVDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNV---------------ITIEDWLE 296 (510)
T ss_pred HcCCCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCc---------------cCHHHHHH
Confidence 368899999999999 9989999998 999999988889987666 99999999983 67888877
Q ss_pred cCCCHHHHHHHHHH
Q 006869 541 RGVTSTSINAFVQG 554 (628)
Q Consensus 541 ~G~~peaI~~fl~~ 554 (628)
. ++|++++.|+..
T Consensus 297 ~-~~pd~lR~~l~~ 309 (510)
T PRK00750 297 Y-APPESLRLFMFA 309 (510)
T ss_pred H-CCHHHHHHHHHh
Confidence 7 999999988764
No 53
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.16 E-value=2e-10 Score=121.94 Aligned_cols=91 Identities=22% Similarity=0.333 Sum_probs=66.4
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcC
Q 006869 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMG 337 (628)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLG 337 (628)
+|==+|.|||.+||||+|+++..+.+|| .+...|+..+||.+.. .-.+.+.+.+.++++.||
T Consensus 4 it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lg 83 (314)
T cd00812 4 ILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMG 83 (314)
T ss_pred EecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444799999999999999998888887 3455688888888632 235678899999999999
Q ss_pred CCCCC-ccCCcccHHHHHHHH----HHHHHcCCcc
Q 006869 338 WEPFK-ITYTSDYFQELYELA----VELIRRGHAY 367 (628)
Q Consensus 338 l~pd~-~~~qSd~~~~~~e~a----~~Li~~G~AY 367 (628)
+.+|- ..+.+ ..+.+.+.+ .+|.++|.+|
T Consensus 84 i~~d~~~~~~t-~~~~~~~~v~~~f~~L~~~G~iy 117 (314)
T cd00812 84 FSYDWRREFTT-CDPEYYKFTQWLFLKLYEKGLAY 117 (314)
T ss_pred cceeccccccc-CCHHHHHHHHHHHHHHHHCCCEE
Confidence 98762 11111 223344444 5999999988
No 54
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.12 E-value=4.4e-10 Score=130.21 Aligned_cols=94 Identities=22% Similarity=0.216 Sum_probs=72.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecCCc-------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G---~~iLRidDtD~-------------~r~~~~~~~~I~~~L~wL 336 (628)
++|==.|.|||.+||||+++++..+.++|. ..| .|+.-.||.+. ......|.+.|.+++++|
T Consensus 7 ~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~l 86 (648)
T PRK12267 7 YITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKL 86 (648)
T ss_pred EEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 456667999999999999999999999883 334 45555555542 234667889999999999
Q ss_pred CCCCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
|+.+|..++.++ |.....+...+|.++|++|.
T Consensus 87 gI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 87 DISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred CCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 999997666665 55555677889999999983
No 55
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.09 E-value=3.6e-09 Score=123.09 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=71.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecC-------------CcccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDT-------------NPEAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G---~~iLRidDt-------------D~~r~~~~~~~~I~~~L~wL 336 (628)
++|==+|.|||.+||||+++.+..+.+||. ..| .|+.-.|+. +|......|.+.+.+++++|
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344457899999999999999999999983 344 344443332 23345678899999999999
Q ss_pred CCCCCCccCCc--ccHHHHHHHHHHHHHcCCcc
Q 006869 337 GWEPFKITYTS--DYFQELYELAVELIRRGHAY 367 (628)
Q Consensus 337 Gl~pd~~~~qS--d~~~~~~e~a~~Li~~G~AY 367 (628)
|+.+|..++.+ +|.+...++..+|+++|.+|
T Consensus 85 ~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy 117 (673)
T PRK00133 85 GISFDNYGSTHSEENRELAQEIYLKLKENGYIY 117 (673)
T ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEE
Confidence 99988654444 57888888999999999988
No 56
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.08 E-value=3.8e-09 Score=113.67 Aligned_cols=235 Identities=17% Similarity=0.205 Sum_probs=133.9
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcccc--------------------------
Q 006869 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPEAE-------------------------- 321 (628)
Q Consensus 273 ~~v~tRFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~r~-------------------------- 321 (628)
.+++.-=+++|||.+||||++..+..+.+|| .+...|+.-.||-|+-|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 3566666889999999999999988887777 355678888888876222
Q ss_pred ----cHHHHHHHHHHHHHcCCCCCCccCCcc-cHH-HHHHHHH-HHHHcCCccccCCCHHHHHHHhhccCCCCCC-CCCH
Q 006869 322 ----KKEYIDHIEEIVQWMGWEPFKITYTSD-YFQ-ELYELAV-ELIRRGHAYVDHQTPEEIKEYREKKMNSPWR-DRPI 393 (628)
Q Consensus 322 ----~~~~~~~I~~~L~wLGl~pd~~~~qSd-~~~-~~~e~a~-~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R-~~~~ 393 (628)
.+.+...+.+.|+.||+.++-+ ++++ |.. .|-+.+. .|-+.+... +-|...++...+..|- -.++
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d~~-~~T~~y~~g~~~~~i~~~L~~~~~I~------~i~~~~~~~~~~~~~~P~~p~ 171 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVEFI-SQSQMYKSGLYDENILIALEKRDEIM------AILNEYRGRELQETWYPFMPY 171 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeeeee-ecCCchhhchHHHHHHHHHHHCChHH------HHHHHhcCCccCCCceeeeee
Confidence 3456677788999999998743 3333 222 2223332 344444432 3344444321111000 0011
Q ss_pred HHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCC-----CCC---Ccccc-cccccchhhhhhcc
Q 006869 394 AESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-----HAG---DKWCI-YPSYDYAHCIVDSI 464 (628)
Q Consensus 394 ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~-----~~g---d~~~~-~PtY~fa~~VDD~~ 464 (628)
.++ -|++. ..++-. +.. .--|-|++. ..|. +.| =+|.+ +|+== ..
T Consensus 172 c~~--------cg~~~--~~v~~~--d~~------~~~v~y~c~-cG~~g~~~~~~g~~KL~Wr~dW~~rW-------~~ 225 (353)
T cd00674 172 CEK--------CGKDT--TTVEAY--DAK------AGTVTYKCE-CGHEETVDIRTGRGKLTWRVDWPMRW-------AI 225 (353)
T ss_pred cCC--------cCcce--eEEEEE--eCC------CCeEEEEcC-CCCEEEEeecCCCcccCCCCCchhhh-------hh
Confidence 000 01000 000000 100 112334331 1110 011 13432 22211 13
Q ss_pred CCcceeecCccccccchh---HHHHHH-HhCCCCCceeeeeeecCCCc-ccccccccccccccccCCCCCcchhhHHHHH
Q 006869 465 ENITHSLCTLEFETRRAS---YFWLLH-ALGLYQPYVWEYSRLNVSNT-VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 539 (628)
Q Consensus 465 ~~IThvirG~e~~~~~~~---q~~L~~-aLg~~~P~~~~~~~Ln~~g~-KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr 539 (628)
.||+-=+-|.||..+..+ -..+++ .||...|....|+++.+.|. |||||+|+. .++..+.
T Consensus 226 l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~~~ye~V~l~gg~KMSKSkGnv---------------I~~~dll 290 (353)
T cd00674 226 LGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVPVMYEFIGLKGGGKMSSSKGNV---------------ITPSDWL 290 (353)
T ss_pred cCCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeEEEeeeEEeCCCCccCCCCCCc---------------CCHHHHH
Confidence 567766778999888444 445666 89998887766777666655 999999983 7888888
Q ss_pred HcCCCHHHHHHHHHHcC
Q 006869 540 RRGVTSTSINAFVQGIG 556 (628)
Q Consensus 540 ~~G~~peaI~~fl~~lG 556 (628)
+. +.|+++|.|+++..
T Consensus 291 ~~-~~~dalR~~~l~~~ 306 (353)
T cd00674 291 EV-APPEVLRYLYARRK 306 (353)
T ss_pred HH-hChHHHHHHHHhCC
Confidence 88 99999999998766
No 57
>PLN02224 methionine-tRNA ligase
Probab=99.07 E-value=1.3e-09 Score=125.03 Aligned_cols=93 Identities=18% Similarity=0.087 Sum_probs=71.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCC---EEEEeeecCC-------------cccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGG---YCYLRYDDTN-------------PEAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G---~~iLRidDtD-------------~~r~~~~~~~~I~~~L~wL 336 (628)
++|==+|.|||.+||||+++.+..+.+||. ..| .|+.-+||.+ |.....+|...+.+.+++|
T Consensus 72 ~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 151 (616)
T PLN02224 72 VLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDL 151 (616)
T ss_pred EEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHc
Confidence 566668899999999999999999999884 234 4666666664 2223456778888999999
Q ss_pred CCCCCCccCCcc--cHHHHHHHHHHHHHcCCcc
Q 006869 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAY 367 (628)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY 367 (628)
|+.+|..++.++ |.+.-.+...+|.++|+.|
T Consensus 152 ~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy 184 (616)
T PLN02224 152 DIAYDKFIRTTDPKHEAIVKEFYARVFANGDIY 184 (616)
T ss_pred CCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999997666555 5555566778999999988
No 58
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.02 E-value=3e-09 Score=121.32 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=67.2
Q ss_pred ccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhh---hhhcc-CCccee--ecCcccccc
Q 006869 406 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHC---IVDSI-ENITHS--LCTLEFETR 479 (628)
Q Consensus 406 G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~---VDD~~-~~IThv--irG~e~~~~ 479 (628)
|...+.+.++.++.+ ..+. .|.|+-|. +| .+||.-+.. .+=+. .+.+++ |-|.||..+
T Consensus 275 g~~~e~dGa~~~~~~-~~g~---~~~vl~ks-------DG-----t~~Y~t~DiA~~~~k~~~~~~d~~IyV~g~dq~~h 338 (562)
T PRK12451 275 DLLEESEGALVVNLE-EEGM---PPCLIRKS-------DG-----ATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLH 338 (562)
T ss_pred CCEEecCCeEEEEec-ccCC---CceEEEeC-------CC-----ccccchhHHHHHHHHhhccCCCEEEEEeCCcHHHH
Confidence 444444445555433 1221 58898888 55 666655442 22222 145555 468888888
Q ss_pred chhHHHHHHHhCCCCCc-eee--eeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHc
Q 006869 480 RASYFWLLHALGLYQPY-VWE--YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (628)
Q Consensus 480 ~~~q~~L~~aLg~~~P~-~~~--~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~ 541 (628)
-.+-..++++||+..+. .-| |++++.+|.|||||+|.. .++.+|.+.
T Consensus 339 ~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~---------------v~l~dLlde 388 (562)
T PRK12451 339 FNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRV---------------VLLEEVLEE 388 (562)
T ss_pred HHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCe---------------eEHHHHHHH
Confidence 88777888899986443 323 467788899999999973 678887764
No 59
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.99 E-value=1.2e-09 Score=119.12 Aligned_cols=92 Identities=26% Similarity=0.270 Sum_probs=64.8
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc---------c-----------------------cc
Q 006869 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A-----------------------EK 322 (628)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~---------r-----------------------~~ 322 (628)
+==+|.|||.|||||+++.++...+||. ..|.-++.+.-+|.- + ..
T Consensus 6 ~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
T cd00817 6 DTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWK 85 (382)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHH
Confidence 3347999999999999999999999983 356555555555431 0 13
Q ss_pred HHHHHHHHHHHHHcCCCCC--Cc--cCCcccHHHHHHHHHHHHHcCCccc
Q 006869 323 KEYIDHIEEIVQWMGWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 323 ~~~~~~I~~~L~wLGl~pd--~~--~~qSd~~~~~~e~a~~Li~~G~AY~ 368 (628)
.++.+.+.++++.||+..| .. +....|.+.......+|.++|++|.
T Consensus 86 ~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 135 (382)
T cd00817 86 EESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR 135 (382)
T ss_pred HHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 4577888999999998644 53 3333344444566689999999884
No 60
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=98.91 E-value=2.8e-08 Score=108.70 Aligned_cols=92 Identities=25% Similarity=0.265 Sum_probs=64.1
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------cccccHHHHHHHHHHHHHcC
Q 006869 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWMG 337 (628)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD----------------~~r~~~~~~~~I~~~L~wLG 337 (628)
+|==.|.|||.|||||+.+.+..+.+||. ..|.=++-+.-|| |+....++.+.|.++++.||
T Consensus 3 ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~ 82 (391)
T PF09334_consen 3 ITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALN 82 (391)
T ss_dssp EEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 34446899999999999999999999994 3565555555554 34456678889999999999
Q ss_pred CCCCCccCCc--ccHHHHHHHHHHHHHcCCcc
Q 006869 338 WEPFKITYTS--DYFQELYELAVELIRRGHAY 367 (628)
Q Consensus 338 l~pd~~~~qS--d~~~~~~e~a~~Li~~G~AY 367 (628)
|.+|...+.+ .|.+.-.+...+|.++|..|
T Consensus 83 I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~ 114 (391)
T PF09334_consen 83 ISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIY 114 (391)
T ss_dssp ---SEEEETTSHHHHHHHHHHHHHHHHTTSEE
T ss_pred CCCcceeCCCCHHHHHHHHHHHHHHHhcCcee
Confidence 9998744333 34444456668999999977
No 61
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=98.84 E-value=5.8e-08 Score=111.00 Aligned_cols=221 Identities=18% Similarity=0.215 Sum_probs=118.3
Q ss_pred eeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc-ccccHHHHHHHHHHHHHcCCCC---CCccCC
Q 006869 274 NVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQWMGWEP---FKITYT 346 (628)
Q Consensus 274 ~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~-~r~~~~~~~~I~~~L~wLGl~p---d~~~~q 346 (628)
+|+.=| +|+|||+|||||+|++++...+|| ..-|.-+.|.--+|. .+.......++ ..+|-+. ......
T Consensus 113 ~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~----~~~~~~~~~~~~~~~~ 188 (566)
T TIGR00456 113 KIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGV----EKFGNEKLNEAVKKPD 188 (566)
T ss_pred eEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHH----HHhCCccccCcccCCh
Confidence 566666 899999999999999999999999 456777888888854 44443333333 2223221 011111
Q ss_pred cccHHHHHHHHHHHHHcCC------cccc---CCCHHHH-----------HHHhh--c----cCC------CCCCCCCHH
Q 006869 347 SDYFQELYELAVELIRRGH------AYVD---HQTPEEI-----------KEYRE--K----KMN------SPWRDRPIA 394 (628)
Q Consensus 347 Sd~~~~~~e~a~~Li~~G~------AY~C---~cs~eei-----------~~~r~--~----~y~------~~~R~~~~e 394 (628)
..+...|.+.++.+.+.-. .+.+ ...++.+ +.+++ . .++ ..+.....+
T Consensus 189 ~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~fD~~~~E~e~~~~~~~~ 268 (566)
T TIGR00456 189 HGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHFDSFVWEGESVKNGMVP 268 (566)
T ss_pred HHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeccccccccccHH
Confidence 2233333333333311100 1100 0011111 11111 0 112 112222233
Q ss_pred HHhHHHHHhh-cccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccC----Ccce
Q 006869 395 ESLKLFEDMR-NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE----NITH 469 (628)
Q Consensus 395 e~l~~f~~m~-~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~----~ITh 469 (628)
+. ++.+. .|...++ .++.++.+. .+. ...|.|+.|. +| .+||.-+.. --|.. +.++
T Consensus 269 ~v---~~~L~~~g~~~~~-Ga~~~~~~~-~~d-~~~~~vl~ks-------DG-----t~~Y~t~Di-A~~~~k~~~~~d~ 329 (566)
T TIGR00456 269 KV---LEDLKEKGLVVED-GALWLDLTL-FGD-KDKDRVLQKS-------DG-----TYLYLTRDI-AYHLDKLERGFDK 329 (566)
T ss_pred HH---HHHHHHCCCEEEc-CCEEEEccc-ccC-CCCCeEEEEC-------CC-----CceechhhH-HHHHHHHhcCCCE
Confidence 33 34444 3444444 445554331 221 1147898887 56 677765552 22222 5566
Q ss_pred e--ecCccccccchhHHHHHHHhCCCCCc-eeeeeeecCCCcccccccccc
Q 006869 470 S--LCTLEFETRRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNF 517 (628)
Q Consensus 470 v--irG~e~~~~~~~q~~L~~aLg~~~P~-~~~~~~Ln~~g~KLSKR~~~~ 517 (628)
+ |-|.||..+-.+-..++.+||++.|. .-|++.--+++.+||||+|+.
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~V~~~kmSkr~Gn~ 380 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGMVPLGSMKTRRGNV 380 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEECCCCCccCCce
Confidence 5 47889988888888888999987774 445555445568999999974
No 62
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.83 E-value=2.7e-08 Score=104.28 Aligned_cols=171 Identities=19% Similarity=0.172 Sum_probs=118.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-------CcccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 352 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-------D~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~~ 352 (628)
.|||.|||||+..++.+|...+..|..+++.|.|. +..++..++...+..++.++|++|++ +.+||+.. .
T Consensus 7 ~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~-~ 85 (280)
T cd00806 7 QPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQSDVP-E 85 (280)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEcCCcH-H
Confidence 58999999999999999999998899999999998 45667778888899999999999965 67899987 4
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceE
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~V 432 (628)
+++.+- .+.|.|+..+++.. .. ++++ . + .. .+.+
T Consensus 86 ~~~l~~-------~l~~~~~~~~l~r~--~~----fk~~------------~-----------~--~~---~~~~----- 119 (280)
T cd00806 86 HYELAW-------LLSCVVTFGELERM--TG----FKDK------------S-----------A--QG---ESVN----- 119 (280)
T ss_pred HHHHHH-------HHhCcCCHHHHHhc--cc----hhhh------------h-----------c--cC---CCCc-----
Confidence 555432 26889998877532 11 1100 0 0 00 0000
Q ss_pred EEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhC------CCCCceeee--ee-e
Q 006869 433 AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY--SR-L 503 (628)
Q Consensus 433 l~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg------~~~P~~~~~--~~-L 503 (628)
.| ..+|-.--+.|-.+.+.++|..|.|-..+-..-.-+++.++ +..|...+. ++ .
T Consensus 120 -----------~g-----~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~ 183 (280)
T cd00806 120 -----------IG-----LLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLP 183 (280)
T ss_pred -----------ch-----hhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccc
Confidence 11 33333333444446677899999988777666666777888 667766655 54 3
Q ss_pred cCCC--cccccccc
Q 006869 504 NVSN--TVMSKRKL 515 (628)
Q Consensus 504 n~~g--~KLSKR~~ 515 (628)
.++| .||||+.+
T Consensus 184 ~l~g~~~KMSKS~~ 197 (280)
T cd00806 184 GLQGPSKKMSKSDP 197 (280)
T ss_pred cCCCCCCcccCCCC
Confidence 5555 59999987
No 63
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=4.2e-08 Score=111.01 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=72.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------cccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD----------------~~r~~~~~~~~I~~~L~wL 336 (628)
++|==-|.|||.+||||+++.+..+.+||. ..|.=++=+.-|| |+....++.+.+.+++++|
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 566667999999999999999999999994 4676566566665 3344667788899999999
Q ss_pred CCCCCCc--cCCcccHHHHHHHHHHHHHcCCcc
Q 006869 337 GWEPFKI--TYTSDYFQELYELAVELIRRGHAY 367 (628)
Q Consensus 337 Gl~pd~~--~~qSd~~~~~~e~a~~Li~~G~AY 367 (628)
||..|.- +..+.|.+.-.+.-.+|.++|..|
T Consensus 88 ~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~ 120 (558)
T COG0143 88 NISFDNFIRTTSPEHKELVQEFFLKLYENGDIY 120 (558)
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHHHCCCEe
Confidence 9999863 344445555556778999999977
No 64
>PLN02610 probable methionyl-tRNA synthetase
Probab=98.79 E-value=5.6e-08 Score=114.81 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=67.3
Q ss_pred eEEEeCCCCCCcCchhHHHH-HHHHHHHHHHc--CCEEEEeeecCCc----------------ccccHHHHHHHHHHHHH
Q 006869 275 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAKER--GGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQW 335 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGhara-al~n~l~Ar~~--~G~~iLRidDtD~----------------~r~~~~~~~~I~~~L~w 335 (628)
++|==.|.|||.+||||+++ .+..+.+||.+ .|.=++-+.-||. ......|.+.+.+.++|
T Consensus 20 ~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~ 99 (801)
T PLN02610 20 LITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDW 99 (801)
T ss_pred EEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 56666799999999999995 57789999944 5766666666662 23345666777889999
Q ss_pred cCCCCCCccCCc-c-cHHHHHHHHHHHHHcCCcc
Q 006869 336 MGWEPFKITYTS-D-YFQELYELAVELIRRGHAY 367 (628)
Q Consensus 336 LGl~pd~~~~qS-d-~~~~~~e~a~~Li~~G~AY 367 (628)
||+.+|...+.+ + |...-.+...+|.++|..|
T Consensus 100 l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy 133 (801)
T PLN02610 100 FDISFDKFGRTSTPQQTEICQAIFKKLMENNWLS 133 (801)
T ss_pred cCCccccCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 999999754444 2 3334445567899999977
No 65
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.3e-07 Score=107.66 Aligned_cols=238 Identities=20% Similarity=0.210 Sum_probs=124.2
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc-ccccHHHHHHHHH-HHHHcCCCCCCccCC
Q 006869 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEE-IVQWMGWEPFKITYT 346 (628)
Q Consensus 272 ~~~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~-~r~~~~~~~~I~~-~L~wLGl~pd~~~~q 346 (628)
+.+|+.=| +|+|||+|||||+|++++...+|| ..-|.=+.|.--+|. .++..-.+-++.. ..++.+..+ -.
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~----~~ 191 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTP----EP 191 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCC----Cc
Confidence 45788888 999999999999999999999999 445666666666643 4443333333322 112221111 11
Q ss_pred cccHHHHH-HHHHHHHHcCC-----------------cc------ccCCCHHHHHHHhh------ccC---CCCCCCCCH
Q 006869 347 SDYFQELY-ELAVELIRRGH-----------------AY------VDHQTPEEIKEYRE------KKM---NSPWRDRPI 393 (628)
Q Consensus 347 Sd~~~~~~-e~a~~Li~~G~-----------------AY------~C~cs~eei~~~r~------~~y---~~~~R~~~~ 393 (628)
-.++..+| +.+++|.+... .+ .|.-+-+.++..=. ..| .....+...
T Consensus 192 ~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~ 271 (577)
T COG0018 192 DGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKV 271 (577)
T ss_pred chHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCcccceeeccchhhhcccH
Confidence 12233333 44444444322 22 11111111111000 011 111222234
Q ss_pred HHHhHHHHHhhcccccC--CCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCccee-
Q 006869 394 AESLKLFEDMRNGRIEE--GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS- 470 (628)
Q Consensus 394 ee~l~~f~~m~~G~~~~--g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThv- 470 (628)
++.+..+++ .|...+ |..++.+--.. ......|.|+-|. +|+ -.|.|=|+|...+=+-.|-+.+
T Consensus 272 ~~vv~~L~~--~~~~~e~~GA~~vdl~~~~--~~gd~~~~vl~KS-------DGt--~lY~t~DIAy~~~K~~~~~d~~I 338 (577)
T COG0018 272 EKVVEDLEE--KGLLYEDDGALVVDLLKFK--KFGDDKDRVLQKS-------DGT--YLYFTRDIAYHLYKFERGFDKLI 338 (577)
T ss_pred HHHHHHHHh--cCCEeeeCCeEEEehhhhh--hcCCCCCeEEEEc-------CCC--eeeehhHHHHHHHHHhcCCCEEE
Confidence 444433332 244444 43434332100 1223368899888 551 1133334555444333444544
Q ss_pred -ecCccccccchhHHHHHHHhCCCCCc--eeee--eee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHc
Q 006869 471 -LCTLEFETRRASYFWLLHALGLYQPY--VWEY--SRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (628)
Q Consensus 471 -irG~e~~~~~~~q~~L~~aLg~~~P~--~~~~--~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~ 541 (628)
|.|.||..+-.+-...+..+|+..+. ..|. +++ +-+|.|||||.|.. .||..+.+.
T Consensus 339 yV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~---------------vtl~dllde 400 (577)
T COG0018 339 YVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNV---------------VTLDDLLDE 400 (577)
T ss_pred EEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCce---------------EEHHHHHHH
Confidence 46889988877777777888887663 3332 444 44889999999973 677777654
No 66
>PLN02286 arginine-tRNA ligase
Probab=98.76 E-value=1.2e-07 Score=108.47 Aligned_cols=231 Identities=15% Similarity=0.141 Sum_probs=120.6
Q ss_pred CeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc-ccccHHHHHHHHHHHHHcCCCCCCccCCcc
Q 006869 273 GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQWMGWEPFKITYTSD 348 (628)
Q Consensus 273 ~~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~-~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd 348 (628)
.+|+.=| +|+|||+||+||+|++++...+|| ..-|.-|.|+--+|. .+.......++.. .+|-. ..+..+
T Consensus 117 ~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~---~~~~~---~~~~~~ 190 (576)
T PLN02286 117 KRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFE---KFPNW---ESVSDQ 190 (576)
T ss_pred ceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHH---hcCcc---cccCcc
Confidence 4688888 999999999999999999999999 567887888877753 4444333333321 22211 112222
Q ss_pred c---HHHHHHHHHHHHH-----------------cCC-------ccccCCCHHHHHHHhh-c--cCCCCCCCCCHHHHhH
Q 006869 349 Y---FQELYELAVELIR-----------------RGH-------AYVDHQTPEEIKEYRE-K--KMNSPWRDRPIAESLK 398 (628)
Q Consensus 349 ~---~~~~~e~a~~Li~-----------------~G~-------AY~C~cs~eei~~~r~-~--~y~~~~R~~~~ee~l~ 398 (628)
. +..||..+.+..+ +|. -..|..+.+++++.=. - .++......-.+....
T Consensus 191 ~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ges~y~~~~~~ 270 (576)
T PLN02286 191 AIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGESFYNPYIPG 270 (576)
T ss_pred cHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCchhhhhhHHH
Confidence 1 1123333222211 111 0111111111111000 0 1221100000001122
Q ss_pred HHHHhh-cccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchh---hhhhccC-Cccee--e
Q 006869 399 LFEDMR-NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAH---CIVDSIE-NITHS--L 471 (628)
Q Consensus 399 ~f~~m~-~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~---~VDD~~~-~IThv--i 471 (628)
..+.++ .|...+.+.++.+..+. .+ .|.|+-|. +| .+||.-.. ...=+.. +.+++ |
T Consensus 271 vi~~L~~~g~~~e~dGa~~v~l~~-~~----~~~vl~ks-------DG-----t~tY~t~DIA~~~~k~~~~~~d~~IyV 333 (576)
T PLN02286 271 VIEELESKGLVVESDGARVIFVEG-FD----IPLIVVKS-------DG-----GFNYASTDLAALWYRLNEEKAEWIIYV 333 (576)
T ss_pred HHHHHHHCCCEEeeCCceEeeccC-CC----CceEEEEC-------CC-----chhhHHHHHHHHHHHHhccCCCEEEEE
Confidence 334444 34444444445543321 11 47788887 55 56664443 3332222 34444 3
Q ss_pred cCccccccchhHHHHHHHhCCCCC----ceee--eeeec-CCCcccccccccccccccccCCCCCcchhhHHHHHHc
Q 006869 472 CTLEFETRRASYFWLLHALGLYQP----YVWE--YSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (628)
Q Consensus 472 rG~e~~~~~~~q~~L~~aLg~~~P----~~~~--~~~Ln-~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~ 541 (628)
-|.++..+-.+-..++++||+..+ ..-| |++++ .+|.+||||+|. ..+|.+|.+.
T Consensus 334 vg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~---------------~v~L~dllde 395 (576)
T PLN02286 334 TDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGE---------------VVRLVDLLDE 395 (576)
T ss_pred EeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCC---------------eeEHHHHHHH
Confidence 588888887777778889997533 2333 45554 688899999997 3678887764
No 67
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.67 E-value=5.4e-07 Score=101.64 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=65.6
Q ss_pred CCcceeecCccccccchhHH---HHH-HHhCCCCCceeee--eeecCCCcccccccccccccccccCCCCCcchhhHHHH
Q 006869 465 ENITHSLCTLEFETRRASYF---WLL-HALGLYQPYVWEY--SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 538 (628)
Q Consensus 465 ~~IThvirG~e~~~~~~~q~---~L~-~aLg~~~P~~~~~--~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~l 538 (628)
.|||-=--|.||..+..+|. .++ ++||.+.|....| -+|+.+|.|||||+|+ .+|+.++
T Consensus 224 lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn---------------~itl~dl 288 (515)
T TIGR00467 224 EKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVTVQYEWISLKGKGGKMSSSKGD---------------VISVKDV 288 (515)
T ss_pred hCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcCcEEEEEEEcCCCccccCCCCC---------------CccHHHH
Confidence 35555557888888664443 355 4898887854444 4577788899999998 4799999
Q ss_pred HHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhh
Q 006869 539 RRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (628)
Q Consensus 539 r~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~ 577 (628)
.+. ++|+++|.|+++-.....- .+++..| +++..|+
T Consensus 289 l~~-~~pdalR~~~l~~~~~~~l-dFd~~~l-~~~dey~ 324 (515)
T TIGR00467 289 LEV-YTPEITRFLFARTKPEFHI-SFDLDVI-KLYEDYD 324 (515)
T ss_pred HHH-cCHHHHHHHHhccCCCCCC-cCCHHHH-HHHHHHH
Confidence 998 9999999997665554322 3554555 5555543
No 68
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.60 E-value=3.5e-07 Score=98.86 Aligned_cols=282 Identities=17% Similarity=0.193 Sum_probs=132.4
Q ss_pred cCCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc-ccccHHHHHHHHHHHHH-cC-CCCC---
Q 006869 271 TGGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIEEIVQW-MG-WEPF--- 341 (628)
Q Consensus 271 ~~~~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~-~r~~~~~~~~I~~~L~w-LG-l~pd--- 341 (628)
.+.+|+.=| +|+|||+|||||+|++++...+|| .+.|.-+.|.-.++. .+.......++...... +. -.|.
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 97 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHL 97 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccch
Confidence 456788888 899999999999999999999999 678999999888854 44443333333322111 00 0000
Q ss_pred --------------Cc-cCCcccH-HHHHHHHHHHHHcCCcc--------ccCCCHHHHHHHhhccCCCCC------CCC
Q 006869 342 --------------KI-TYTSDYF-QELYELAVELIRRGHAY--------VDHQTPEEIKEYREKKMNSPW------RDR 391 (628)
Q Consensus 342 --------------~~-~~qSd~~-~~~~e~a~~Li~~G~AY--------~C~cs~eei~~~r~~~y~~~~------R~~ 391 (628)
+. ....+.+ ...+++..+| +.|... .|..+.+++.... -.++.-. ..-
T Consensus 98 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-e~gd~~~~~~~~~~~~~~~k~~l~~l~-i~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 98 EDLYVGANKRDEADEIAEKEPEELEEEAREYLKKL-EQGDEEFRELWQKYILEWSKETLQRLY-IRFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHH-HHCCTTHHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHTT
T ss_pred hhhhhhhhhhhhhhhhccccccccccccceeeeec-ccccHHHHHHHHHHHHHHHHHHHHHHH-HHhCcCcccchhhhhh
Confidence 00 0001111 1111112222 222211 1111111111111 0111110 111
Q ss_pred CHHHHhHHHHHhh-cccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhh---hhhc-cCC
Q 006869 392 PIAESLKLFEDMR-NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHC---IVDS-IEN 466 (628)
Q Consensus 392 ~~ee~l~~f~~m~-~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~---VDD~-~~~ 466 (628)
... ..++.++ .|.+.+.+.++.++.+. . ....|.|+-|. +| .+||....+ .+=. ..+
T Consensus 176 ~v~---~vl~~L~e~g~~~~~dGa~~i~~~~-~--g~~k~~Vl~ks-------DG-----t~~Y~trDiA~~~~r~~~~~ 237 (354)
T PF00750_consen 176 KVD---EVLERLKEKGLLYESDGALWIDLTK-F--GDDKDRVLRKS-------DG-----TSTYLTRDIAYHLYRFEEYG 237 (354)
T ss_dssp HHH---HHHHHHHCTTTEEEETTEEEEEGCC-T--STSS-EEEEET-------TS-----EB-HHHHHHHHHHHHHCCSS
T ss_pred HHH---HHHHHHHhCCcEEecCCcEEEechh-c--CCCCcceEEcC-------CC-----ceEEEcchHHHHHHHHhhhc
Confidence 112 3345555 35445555667776542 2 22367888887 55 777765542 2222 233
Q ss_pred ccee--ecCccccccchhHHHHHHHhCCC--CCceee--eee-ecCCCc-ccccccccccccccccCCCCCcchhhHHHH
Q 006869 467 ITHS--LCTLEFETRRASYFWLLHALGLY--QPYVWE--YSR-LNVSNT-VMSKRKLNFLVTNKYVDGWDDPCLMTLAGL 538 (628)
Q Consensus 467 IThv--irG~e~~~~~~~q~~L~~aLg~~--~P~~~~--~~~-Ln~~g~-KLSKR~~~~lv~~~~v~~wddPr~~tl~~l 538 (628)
.+.+ |-|.++..+-.+-..++++||.. ....-| |+. |..+|+ +||+|+|+. .+|.+|
T Consensus 238 ~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~~---------------i~l~dl 302 (354)
T PF00750_consen 238 FDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGNV---------------ITLDDL 302 (354)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTTSS---------------TBHHHH
T ss_pred cccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCCCc---------------eEHHHH
Confidence 3433 35667766666666677889962 223334 344 567887 999999983 678888
Q ss_pred HHcCCCHHHHHHHHHH-cCCCCCCc-ccchhhHHHHHHhhhccCCCCcceeec
Q 006869 539 RRRGVTSTSINAFVQG-IGISRSDS-LIRLDRLEYHIREELNKTAPRTMVVLN 589 (628)
Q Consensus 539 r~~G~~peaI~~fl~~-lG~t~~~~-~~~~~~le~~ir~~~~~~~~r~~~v~d 589 (628)
.+.... .+.. .... -.++..+. .+.-..--.+++-++....+....+||
T Consensus 303 lde~~~-~a~~-~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fd 353 (354)
T PF00750_consen 303 LDEAVE-RALE-IMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFD 353 (354)
T ss_dssp HHHHHH-HHHH-HHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEE
T ss_pred HHHHHH-HHHH-HHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceec
Confidence 775321 1211 1111 11211110 000011234566677777776766665
No 69
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=98.18 E-value=1.7e-05 Score=85.03 Aligned_cols=170 Identities=22% Similarity=0.265 Sum_probs=102.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCC----cc----cccHHHHHHHHHHHHHcCCCCCC--ccCCcccHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PE----AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD----~~----r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~ 351 (628)
.|||.+||||.-.++.+|..- +.|..+++=|-|.. +. .........+..++-.+|++|++ +.+||+..
T Consensus 10 ~PTG~~HlG~~l~~~~~~~~~-q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~qS~~~- 87 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFIFLQSDYP- 87 (328)
T ss_pred CCCcHhHHHHHHHHHHHHHHH-hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEEEEcCCcH-
Confidence 688999999999999988776 56666666666651 11 23344455566677789999986 77899987
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCce
Q 006869 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~ 431 (628)
.|++.+-.| -|++|-.++... .. +..++. ..+.+
T Consensus 88 e~~el~~~l-------~~~~t~~~l~r~--~~----~k~k~~-----------------------------~~~~~---- 121 (328)
T TIGR00233 88 EHYELAWLL-------SCQVTFGELKRM--TQ----FKDKSQ-----------------------------AENVP---- 121 (328)
T ss_pred HHHHHHHHH-------HccCCHHHHHhc--cC----cchhcc-----------------------------CCCCC----
Confidence 455555443 577776665432 11 111000 00000
Q ss_pred EEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhC------CCCCceeee---ee
Q 006869 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEY---SR 502 (628)
Q Consensus 432 Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg------~~~P~~~~~---~~ 502 (628)
.| ...||.-+-|.+ .+.+.++|..|.|-..+-..-.-+++.++ +..|...+. ++
T Consensus 122 ------------~g--~l~YP~lqaaDi---l~~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~ 184 (328)
T TIGR00233 122 ------------IG--LFSYPVLQAADI---LLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPR 184 (328)
T ss_pred ------------ch--hhcchHHHHhhh---hhcCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCC
Confidence 11 012555554444 46788899999886544443334556676 556654442 33
Q ss_pred -ecCCCccccccccc
Q 006869 503 -LNVSNTVMSKRKLN 516 (628)
Q Consensus 503 -Ln~~g~KLSKR~~~ 516 (628)
...+|+||||+.++
T Consensus 185 l~gl~~~KMSKS~~~ 199 (328)
T TIGR00233 185 LMGLSGKKMSKSDPN 199 (328)
T ss_pred CCCCCCCcCCCCCCC
Confidence 35567899999875
No 70
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.13 E-value=2.3e-05 Score=84.39 Aligned_cols=240 Identities=19% Similarity=0.238 Sum_probs=104.3
Q ss_pred HHHHHhhhh--cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCcccc-------------
Q 006869 262 EVLDKHLEV--TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPEAE------------- 321 (628)
Q Consensus 262 ~~~~~h~~~--~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDtD~~r~------------- 321 (628)
++++++.+. .++.++.-=.=+|+|..||||+|-++..+..+|. ...++|+--||.|+=|-
T Consensus 10 ~i~~~r~~~~~~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~y 89 (360)
T PF01921_consen 10 EIIKERGKRKGGKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKY 89 (360)
T ss_dssp HHHHHC-------SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCC
T ss_pred HHHHHhhccccCCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHh
Confidence 344444333 3456777777799999999999999998888883 34579999999996431
Q ss_pred ------------------cHHHHHHHHHHHHHcCCCCCC----ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHH---
Q 006869 322 ------------------KKEYIDHIEEIVQWMGWEPFK----ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEI--- 376 (628)
Q Consensus 322 ------------------~~~~~~~I~~~L~wLGl~pd~----~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei--- 376 (628)
.+.|...+.+.|+.||+++.- ..|+|-+++... ...+++ +++|
T Consensus 90 lg~Plt~VPdP~G~~~SyaeH~~~~~~~~L~~~gie~e~~s~te~Y~sG~y~~~i---~~aL~~---------~~~I~~I 157 (360)
T PF01921_consen 90 LGKPLTRVPDPFGCHESYAEHFNAPFEEFLDEFGIEYEFISQTEMYRSGRYDEQI---RTALEN---------RDEIREI 157 (360)
T ss_dssp TTSBTTTSB-TTSSSSCHHHHHHHHHHHHHHTTT---EEEECCCCCCTTTTHHHH---CHHHHT---------HHHHHHH
T ss_pred cCCccccCCCCCCCCccHHHHHHHHHHHHHHHcCCceEEEeHHHhhhCCchHHHH---HHHHHh---------HHHHHHH
Confidence 345667778889999997632 234444443222 222221 2222
Q ss_pred -HHHhhccCCCCCCC-CCHHHHhHHHHHhhcccccCCCeEEEE-EecCCCCCCCCCceEEEEEecCCCC-----CCCC--
Q 006869 377 -KEYREKKMNSPWRD-RPIAESLKLFEDMRNGRIEEGKATLRM-KQDMQNDNFNMYDLIAYRIKFTPHP-----HAGD-- 446 (628)
Q Consensus 377 -~~~r~~~y~~~~R~-~~~ee~l~~f~~m~~G~~~~g~~~lRl-k~d~~~~~~~~~D~Vl~R~~~~~h~-----~~gd-- 446 (628)
...++...+..|-- .++.+ .-|++ .+..+ ..+. -..-|-|++....|. +.|.
T Consensus 158 l~~~~~~~~~~~y~Pf~piC~--------~cGri----~tt~v~~~d~------~~~~v~Y~c~~cG~~g~~~i~~g~gK 219 (360)
T PF01921_consen 158 LNEYRGRERPETYSPFLPICE--------KCGRI----DTTEVTEYDP------EGGTVTYRCEECGHEGEVDITGGNGK 219 (360)
T ss_dssp HHHHHHHT--TT--SEEEEET--------TTEE------EEEEEEE--------SSSEEEEE--TTS---EEETTTT-EE
T ss_pred HHHhcCcCCCCCeeeeeeecc--------ccCCc----ccceeeEeec------CCCEEEEEecCCCCEEEEecCCCccc
Confidence 22222111111100 00000 00110 01111 1110 134566666333332 1111
Q ss_pred -cccc-cccccchhhhhhccCCcceeecCccccc---cchhHHHHH-HHhCCCCCceeeeeeecCCC-cccccccccccc
Q 006869 447 -KWCI-YPSYDYAHCIVDSIENITHSLCTLEFET---RRASYFWLL-HALGLYQPYVWEYSRLNVSN-TVMSKRKLNFLV 519 (628)
Q Consensus 447 -~~~~-~PtY~fa~~VDD~~~~IThvirG~e~~~---~~~~q~~L~-~aLg~~~P~~~~~~~Ln~~g-~KLSKR~~~~lv 519 (628)
.|.+ +|+== ...||+-=-=|.||.+ |...-..|+ +.||...|....|....++| .||||++|+
T Consensus 220 L~WkvDW~mRW-------~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~--- 289 (360)
T PF01921_consen 220 LQWKVDWPMRW-------AALGVDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFFLDKGGGKMSSSKGN--- 289 (360)
T ss_dssp E-HHHHHHHHH-------HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--EEES--------------
T ss_pred ccCCCcChhhh-------hhcCceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEEEeCCCcccccCCCC---
Confidence 2422 22211 1245555556888888 666667888 68999999888887654444 499999998
Q ss_pred cccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHH
Q 006869 520 TNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQG 554 (628)
Q Consensus 520 ~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~ 554 (628)
.+|+....+- ++|+.++.|+..
T Consensus 290 ------------~~t~~e~L~~-~~PE~lr~l~~~ 311 (360)
T PF01921_consen 290 ------------GITPEEWLEY-APPESLRYLMAR 311 (360)
T ss_dssp ---------------HHHHHTT-S-HHHHHHHHHC
T ss_pred ------------ccCHHHHHHh-cCHHHHHHHHcc
Confidence 3799998887 789999888765
No 71
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2.1e-05 Score=83.41 Aligned_cols=176 Identities=20% Similarity=0.211 Sum_probs=109.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCC-------c-ccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN-------P-EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD-------~-~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~ 351 (628)
-|||.|||||.-.++.+|.......+.|+.=|-|.. + +.....++..+..++=.+||+|++ ++.||+.-+
T Consensus 13 ~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~if~QS~v~e 92 (314)
T COG0180 13 QPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPE 92 (314)
T ss_pred CCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccEEEEccCchH
Confidence 589999999999999999988877677777777762 2 134555666666677788999987 789999875
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCce
Q 006869 352 ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDL 431 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~ 431 (628)
+++++-.| -|.-+--+++.. ..+. +... .+..
T Consensus 93 -~~eLa~~l-------~~~~~~gel~r~--~~fK----------------dk~~------------------~~~~---- 124 (314)
T COG0180 93 -HAELAWLL-------SCVTNFGELERM--TQFK----------------DKSA------------------KKGE---- 124 (314)
T ss_pred -HHHHHHHH-------HccCcHHHHHhh--cCcc----------------hhhh------------------cccc----
Confidence 66666443 466555565543 1111 0000 0000
Q ss_pred EEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhC------CCCCceeeee--e-
Q 006869 432 IAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWEYS--R- 502 (628)
Q Consensus 432 Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg------~~~P~~~~~~--~- 502 (628)
.+ + .| .-.||.-+-|.++ +-+-++|=.|.|-..+-..-.-|.+.++ +..|.....- +
T Consensus 125 ---~~---~---~G--l~~YPvlqAADIL---l~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i 190 (314)
T COG0180 125 ---SI---P---IG--LLTYPVLQAADIL---LYQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARL 190 (314)
T ss_pred ---cc---c---cc--chhccHHHHHHhh---hccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcc
Confidence 00 0 11 0125655544443 3355777789887776665556666666 4455433322 4
Q ss_pred ecCCC-cccccccccccc
Q 006869 503 LNVSN-TVMSKRKLNFLV 519 (628)
Q Consensus 503 Ln~~g-~KLSKR~~~~lv 519 (628)
..++| .||||+.++..|
T Consensus 191 ~gL~g~~KMSkS~~ns~I 208 (314)
T COG0180 191 PGLDGPGKMSKSDPNSAI 208 (314)
T ss_pred cCCCCCCcccccCCCCee
Confidence 36677 899999998444
No 72
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=98.05 E-value=5.6e-05 Score=82.26 Aligned_cols=187 Identities=21% Similarity=0.250 Sum_probs=108.3
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCc-------ccccHHHHHHHHHH
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP-------EAEKKEYIDHIEEI 332 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~-------~r~~~~~~~~I~~~ 332 (628)
.+.+..+++.. .-.+.|=|. |||.+||||+-+ +.++..-...|..+++-|-|... ..+...+...+..+
T Consensus 54 ~d~il~~~~~~~~~~iytG~~--PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~ 130 (368)
T PRK12285 54 YDKILEAYRNGKPFAVYTGFM--PSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILD 130 (368)
T ss_pred HHHHHHHHhcCCCeEEEEccC--CCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHH
Confidence 44455555442 223444444 558999999864 55555555567777777777621 12334455557778
Q ss_pred HHHcCCCCCC--ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccC
Q 006869 333 VQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 410 (628)
Q Consensus 333 L~wLGl~pd~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~ 410 (628)
+-.+|++|++ ++.||++.+ +++.+-.| .|..|-.+++.. ..+.. +
T Consensus 131 ~lA~G~Dp~k~~i~~qS~~~~-~~~l~~~l-------~~~~t~~~l~r~--~~f~~-----~------------------ 177 (368)
T PRK12285 131 LIALGFDPDKTEIYFQSENIK-VYDLAFEL-------AKKVNFSELKAI--YGFTG-----E------------------ 177 (368)
T ss_pred HHHhCCCccceEEEECCchHH-HHHHHHHH-------HhhCcHHHHHHh--hCCCC-----C------------------
Confidence 8899999985 789999874 77776655 455665555432 00000 0
Q ss_pred CCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhh---hccCCcceeecCccccccchhHHHHH
Q 006869 411 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV---DSIENITHSLCTLEFETRRASYFWLL 487 (628)
Q Consensus 411 g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VD---D~~~~IThvirG~e~~~~~~~q~~L~ 487 (628)
.+ ++. ..||.-+-|.++- |.-..-++|.+|.|-..+-..-.-++
T Consensus 178 -------------~~-------~g~-------------~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA 224 (368)
T PRK12285 178 -------------TN-------IGH-------------IFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIA 224 (368)
T ss_pred -------------Cc-------hhh-------------hhhhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHH
Confidence 00 000 1144444333331 00134567888887554333223345
Q ss_pred HHh----CCCCCceeeeeee-cCCCccccccccc
Q 006869 488 HAL----GLYQPYVWEYSRL-NVSNTVMSKRKLN 516 (628)
Q Consensus 488 ~aL----g~~~P~~~~~~~L-n~~g~KLSKR~~~ 516 (628)
+.+ |+..|...+.+++ .++|+||||+..+
T Consensus 225 ~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~ 258 (368)
T PRK12285 225 ERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPE 258 (368)
T ss_pred HHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCC
Confidence 566 8888876655554 7788999999853
No 73
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=1.3e-05 Score=86.47 Aligned_cols=93 Identities=22% Similarity=0.185 Sum_probs=62.8
Q ss_pred HhCCCCCce-eeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchh
Q 006869 489 ALGLYQPYV-WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (628)
Q Consensus 489 aLg~~~P~~-~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~ 567 (628)
+-|++.|.. .-|+|...+|.||||+.|+.. ||+ .|.++ |.++++|+|++.-|.-..+..++.+
T Consensus 323 aAGlplP~~I~vHghwt~ngmKMsKSLGNvv----------dP~-----~l~~k-ygvD~vRyflLr~~~l~~Dgdy~ee 386 (578)
T KOG0436|consen 323 AAGLPLPKMIFVHGHWTKNGMKMSKSLGNVV----------DPF-----ELVQK-YGVDAVRYFLLREGELGNDGDYSEE 386 (578)
T ss_pred hcCCCCccEEEEeeeeeecceecchhhcccc----------CHH-----HHHHH-hCccceeeEeeeccccCCCCCccHH
Confidence 558888865 347899999999999999852 443 35555 8899999999987777777777777
Q ss_pred hHHHHHHhhhccCCCCcceeeccceeEEec
Q 006869 568 RLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (628)
Q Consensus 568 ~le~~ir~~~~~~~~r~~~v~dp~kl~i~n 597 (628)
.|...+...+.+...-.....--.|+.|.|
T Consensus 387 kl~k~~n~~La~~lG~LlnRc~gkkln~sn 416 (578)
T KOG0436|consen 387 KLIKIVNAHLANTLGNLLNRCLGKKLNISN 416 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccChhc
Confidence 777776555544332222222234555555
No 74
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.84 E-value=0.00026 Score=76.08 Aligned_cols=189 Identities=17% Similarity=0.166 Sum_probs=111.0
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc--ccccHHHHHHHHHH
Q 006869 260 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP--EAEKKEYIDHIEEI 332 (628)
Q Consensus 260 ~~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~--~r~~~~~~~~I~~~ 332 (628)
|.+-|+++++. +.+.+.=..=.|||.+||||+- ++.+|......|..+++=|-|. |+ ..........+..+
T Consensus 17 ~~~el~~~l~~-~~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~ 94 (329)
T PRK08560 17 TEEELRELLES-KEEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94 (329)
T ss_pred CHHHHHHHHhC-CCCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHH
Confidence 46677777753 3333333445778999999977 4566666665577777767665 21 23445566677888
Q ss_pred HHHcCCCCCC--ccCCcccHHH--HHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccc
Q 006869 333 VQWMGWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRI 408 (628)
Q Consensus 333 L~wLGl~pd~--~~~qSd~~~~--~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~ 408 (628)
+..+|++|++ +.+||+.... |+..+-.| .|.++-.++...... + |+
T Consensus 95 ~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l-------~~~~~~~~l~r~~~~-~---------------------~~- 144 (329)
T PRK08560 95 FEALGLDPDKTEFVLGSEFQLDKEYWLLVLKL-------AKNTTLARARRSMTI-M---------------------GR- 144 (329)
T ss_pred HHHcCCChhheEEEecchhhccchHHHHHHHH-------HhhccHHHHHHhhhh-h---------------------cc-
Confidence 8899999975 6788886532 22332222 456665555432100 0 00
Q ss_pred cCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHH
Q 006869 409 EEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (628)
Q Consensus 409 ~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~ 488 (628)
. . .+ .-.+..+|-.--+.|-.+.+.++|+.|.|-..+-..-.-+++
T Consensus 145 -----------~--~-----~~----------------~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~ 190 (329)
T PRK08560 145 -----------R--M-----EE----------------PDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLP 190 (329)
T ss_pred -----------c--C-----CC----------------CCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhH
Confidence 0 0 00 001133333334444456788899999875544333333456
Q ss_pred HhCCCCCceeeeee-ecCCCc--cccccc
Q 006869 489 ALGLYQPYVWEYSR-LNVSNT--VMSKRK 514 (628)
Q Consensus 489 aLg~~~P~~~~~~~-Ln~~g~--KLSKR~ 514 (628)
.++...|...++++ .+++|. ||||+.
T Consensus 191 ~~n~~~p~~l~~~~l~~L~g~~~KMSKS~ 219 (329)
T PRK08560 191 KLGYKKPVCIHTPLLTGLDGGGIKMSKSK 219 (329)
T ss_pred hcCCCCceEEEcCccCCCCCCCCCCcCCC
Confidence 78877787666665 366776 999998
No 75
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.77 E-value=0.00045 Score=72.17 Aligned_cols=221 Identities=17% Similarity=0.193 Sum_probs=127.5
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Ccc-----------cccHHHHHHHHHHHHHcCCC--CCC
Q 006869 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----------AEKKEYIDHIEEIVQWMGWE--PFK 342 (628)
Q Consensus 282 sPtG-~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~-----------r~~~~~~~~I~~~L~wLGl~--pd~ 342 (628)
.||| .+||||...+. ++..-...|..+++=|-|. ||. .........+..++..+|+. |++
T Consensus 8 ~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~~~~p~k 86 (269)
T cd00805 8 DPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILDFIPPEK 86 (269)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 6889 89999999754 4444444465666666553 341 12445667788889999996 764
Q ss_pred --ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEec
Q 006869 343 --ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 420 (628)
Q Consensus 343 --~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d 420 (628)
+..||+..+.+| ...+++ +.|+++..++...-. ..+ |+.
T Consensus 87 ~~i~~~s~~~~~l~--~~~~l~----l~~~~~~~~l~~~~~-----------~k~--------------------r~~-- 127 (269)
T cd00805 87 AKFVNNSDWLLSLY--TLDFLR----LGKHFTVNRMLRRDA-----------VKV--------------------RLE-- 127 (269)
T ss_pred eEEEEchHhhccCC--HHHHHH----HHhhCcHHHHHHHHH-----------HHH--------------------HHh--
Confidence 778998766521 222222 467788776654311 000 000
Q ss_pred CCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeee
Q 006869 421 MQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEY 500 (628)
Q Consensus 421 ~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~ 500 (628)
...+.+ .+ --.||.-+-+.. ...+.++++.|.|-..+-..-.-+++.++...|...++
T Consensus 128 -~~~~~~----------------~~--~~~YP~lQaaDi---~~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~ 185 (269)
T cd00805 128 -EEEGIS----------------FS--EFIYPLLQAYDF---VYLDVDLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTT 185 (269)
T ss_pred -cCCCCc----------------HH--HHHHHHHHHhhH---HHHhCCeeEecHHHHHHHHHHHHHHHHhCCCCcEEEee
Confidence 000000 00 012554443333 34566888999887666555555677788877877777
Q ss_pred eee-cCCCccccccccccc-ccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhc
Q 006869 501 SRL-NVSNTVMSKRKLNFL-VTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (628)
Q Consensus 501 ~~L-n~~g~KLSKR~~~~l-v~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~ 578 (628)
++| +.+|.||||+.++.. |.- -|+| .++....++-+++. +.+|+..+-.- +...++++.+++..
T Consensus 186 ~ll~~l~G~KMSKS~~~~~~i~l-----~dsp--~~i~~Ki~~a~~~~-v~~~l~~~~~~------~~~~~eel~~~~~~ 251 (269)
T cd00805 186 PLLTGLDGGKMSKSEGNAIWDPV-----LDSP--YDVYQKIRNAFDPD-VLEFLKLFTFL------DYEEIEELEEEHAE 251 (269)
T ss_pred ccccCCCCCcccCCCCCcccccC-----CCCH--HHHHHHHHcCCcHH-HHHHHHHHHcC------CHHHHHHHHHHHhc
Confidence 765 789999999998753 221 1333 45666666667764 45555543221 12456666666643
No 76
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=97.77 E-value=0.00026 Score=76.10 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCCCcCchhHHHHHHHHHHHHH-HcCCEEEEeeecC-------CcccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAK-ERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar-~~~G~~iLRidDt-------D~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~ 351 (628)
.|||.+||||...++-+|..-. .++..+++=|-|. |++ ...++...+..++-.+|++|++ +.+||+.-+
T Consensus 11 qPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~-~l~~~~~~~~~~~lA~GlDP~k~~if~qS~v~~ 89 (332)
T PRK12556 11 KPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPE-QFRSYTREVAATWLSLGLDPEDVIFYRQSDVPE 89 (332)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHH-HHHHHHHHHHHHHhheeecccceEEEECCCchH
Confidence 5789999999999999986554 4565555555554 222 2334445566677789999986 789999754
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHH
Q 006869 352 ELYELAVELIRRGHAYVDHQTPEEIKE 378 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C~cs~eei~~ 378 (628)
..+.+- ...|..+-.++..
T Consensus 90 -~~eL~~-------il~~~t~~g~L~R 108 (332)
T PRK12556 90 -IFELAW-------ILSCLTPKGLMNR 108 (332)
T ss_pred -HHHHHH-------HHHccchHHHHHh
Confidence 233332 2357766655543
No 77
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.77 E-value=4.3e-05 Score=91.05 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=68.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc----------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~----------------~r~~~~~~~~I~~~L~wL 336 (628)
+++==+|.|||.|||||+++.++.+.+||. ..|.-++.+--+|. .....++.+.|.+.++.|
T Consensus 35 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~l 114 (805)
T PRK00390 35 YVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSL 114 (805)
T ss_pred EEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 455447999999999999999999999994 46766666655552 223567889999999999
Q ss_pred CCC--CCCcc--CCcccHHHHHHHHHHHHHcCCccc
Q 006869 337 GWE--PFKIT--YTSDYFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 337 Gl~--pd~~~--~qSd~~~~~~e~a~~Li~~G~AY~ 368 (628)
|+. |+..+ ...+|.........+|.++|++|.
T Consensus 115 Gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 150 (805)
T PRK00390 115 GFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYR 150 (805)
T ss_pred CCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 995 44433 333444444556679999999883
No 78
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=97.74 E-value=5.7e-05 Score=90.36 Aligned_cols=92 Identities=27% Similarity=0.379 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc----------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~----------------~r~~~~~~~~I~~~L~wL 336 (628)
+++==+|.|||.|||||+++.++.+.+||. ..|.-++..--+|. .....++.+.|.+.++.|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 555568999999999999999999999994 46776776666652 223557889999999999
Q ss_pred CCC--CCCccCCcccHHHHHHHH----HHHHHcCCccc
Q 006869 337 GWE--PFKITYTSDYFQELYELA----VELIRRGHAYV 368 (628)
Q Consensus 337 Gl~--pd~~~~qSd~~~~~~e~a----~~Li~~G~AY~ 368 (628)
|+. |+..+..++ ..|++.. .+|.++|++|.
T Consensus 112 G~~~Dw~~~~~T~d--~~y~~~~~~~F~~L~~kGliy~ 147 (842)
T TIGR00396 112 GFSYDWDREIATCD--PEYYKWTQWIFLELFEKGLAYV 147 (842)
T ss_pred CCcccCCCCcccCC--HHHHHHHHHHHHHHHHCCCeEe
Confidence 975 444433333 3444444 58999999883
No 79
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.001 Score=74.02 Aligned_cols=164 Identities=23% Similarity=0.339 Sum_probs=123.9
Q ss_pred HHHHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCC-------CCCCchhHHHHHH
Q 006869 11 EILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT-------NALVHRPTLLLYI 82 (628)
Q Consensus 11 ~~~~~f-~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~-------~~~~~r~~l~~~I 82 (628)
+..+.| ...|||++-|.++++.+.+ .-|.++.+. ++. +.-.+..|++....+.. -...|..-+.+.+
T Consensus 458 ek~~r~~~eygLs~~LA~~~~~~~~~-~~FEel~e~-~v~---p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~ 532 (631)
T COG2511 458 EKVERYVKEYGLSKELAEQLASDPRV-DLFEELVEK-GVD---PTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLV 532 (631)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhH-HHHHHHHHc-CCC---HHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHH
Confidence 334444 5579999999999998654 455555544 442 33334444444433322 2356788899999
Q ss_pred hhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh
Q 006869 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR 162 (628)
Q Consensus 83 ~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~ 162 (628)
.+|+|.- .++..+++++.+++ .-|.++.-+..|.. ..++|||+..|.+++++|.+.+.+.+-.. +|.||+.+=..
T Consensus 533 ~~g~iak-e~iee~l~~l~~~p--~~~~~e~~~~~gL~-~ls~eEve~iI~eii~~~~d~i~~rg~~a-~g~lmg~~M~~ 607 (631)
T COG2511 533 SEGKIAK-EAIEEILKALAENP--GKDAAEIAEKLGLK-ELSEEEVEKIIDEIIESNLDVIKERGMGA-MGLLMGRVMAK 607 (631)
T ss_pred hcccchH-HHHHHHHHHHHhCC--CCCHHHHHHHhccc-cCCHHHHHHHHHHHHHhhHHHHHHhchhh-HHHHHHHHHHH
Confidence 9999985 99999999998875 56888888888854 59999999999999999999888877776 89999985433
Q ss_pred -CCCCChhhhHHHHHHHHHHhcC
Q 006869 163 -LPWADPKIVKQLIDARMYELLG 184 (628)
Q Consensus 163 -LkWAd~~~vK~~vd~~~~~llg 184 (628)
=-=|||+.|...+.+.+.+.+|
T Consensus 608 ~rg~aDgk~v~e~lr~~i~e~~~ 630 (631)
T COG2511 608 LRGRADGKLVSEILREKLQEILG 630 (631)
T ss_pred hhccCCcHHHHHHHHHHHHHhhc
Confidence 3469999999999999888776
No 80
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.60 E-value=0.0021 Score=71.16 Aligned_cols=81 Identities=11% Similarity=0.057 Sum_probs=50.3
Q ss_pred CcceeecCccccccchhHHHHHHHhCCCCCceeeeeee-cCCCcccccccccccccccccCCCCCcc---hhhHHHHHHc
Q 006869 466 NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPC---LMTLAGLRRR 541 (628)
Q Consensus 466 ~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr---~~tl~~lr~~ 541 (628)
+.+.++-|.|-..+-..=.-|++.++...|.....|+| +.+|+||||+.++. | |=|+. ...+......
T Consensus 186 ~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~na-I-------~L~d~~tsp~~i~qki~~ 257 (410)
T PRK13354 186 DVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAGGA-I-------WLDPEKTSPYEFYQFWMN 257 (410)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCCCc-e-------eccCCCCCHHHHHHHHHc
Confidence 67777778765444333334556777777755556764 78899999998753 2 33444 4455554443
Q ss_pred CCCHHHHHHHHHHc
Q 006869 542 GVTSTSINAFVQGI 555 (628)
Q Consensus 542 G~~peaI~~fl~~l 555 (628)
.+...+..|+..+
T Consensus 258 -~~D~~v~~~l~~~ 270 (410)
T PRK13354 258 -IDDRDVVKYLKLF 270 (410)
T ss_pred -CChHHHHHHHHHH
Confidence 6666666666654
No 81
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00055 Score=76.29 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCcceeecCccccccchhHHHHHH----HhCCCCCceeeeeeecCC-CcccccccccccccccccCCCCCcchhhHHHHH
Q 006869 465 ENITHSLCTLEFETRRASYFWLLH----ALGLYQPYVWEYSRLNVS-NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLR 539 (628)
Q Consensus 465 ~~IThvirG~e~~~~~~~q~~L~~----aLg~~~P~~~~~~~Ln~~-g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr 539 (628)
.|||-=-=|.||..+..+|.-.++ -+|+..|....|-...+. +.+|||++|+. .++++..
T Consensus 228 lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~~---------------i~~~dwl 292 (521)
T COG1384 228 LGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGNV---------------ISLSDWL 292 (521)
T ss_pred cCcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCCcE---------------EcHHHHH
Confidence 345544569999999999987765 457766665555443333 58999999983 7899988
Q ss_pred HcCCCHHHHHHHHHH
Q 006869 540 RRGVTSTSINAFVQG 554 (628)
Q Consensus 540 ~~G~~peaI~~fl~~ 554 (628)
+- ++|+.++.|+.+
T Consensus 293 ev-~~pE~lry~~~r 306 (521)
T COG1384 293 EV-APPEVLRYLIAR 306 (521)
T ss_pred Hh-cCHhHeeeeeee
Confidence 86 788888877654
No 82
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=97.56 E-value=0.00019 Score=77.23 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----C---cccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----N---PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 352 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt----D---~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~~ 352 (628)
.|||.+||||...++.++..-...+..+++ |-|. + ...+..++...+..++-.+|++|++ +..||+..+
T Consensus 10 ~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~-IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~qS~~~e- 87 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKNRVALQNEHEQFVL-IADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPE- 87 (333)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCEEEE-EccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEECCcchH-
Confidence 467999999999999999766665555544 4332 1 1123345555666677789999985 678999753
Q ss_pred HHHHHHHHHHcCCccccCCCHHHH
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEI 376 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei 376 (628)
+.++.. .+.|.++-.++
T Consensus 88 ~~~l~~-------~l~~~~~~~~l 104 (333)
T PRK12282 88 LAELTM-------YYMNLVTVARL 104 (333)
T ss_pred HHHHHH-------HHHhhchHHHH
Confidence 333321 25677665554
No 83
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=97.50 E-value=0.00019 Score=85.60 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=66.0
Q ss_pred eEEEe-CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC-----------------cc------------ccc
Q 006869 275 VLTRF-PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------PE------------AEK 322 (628)
Q Consensus 275 v~tRF-aPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD-----------------~~------------r~~ 322 (628)
++.=. +|.|||.|||||+++.++.+.+||. ..|.-++.+-.+| +. .-.
T Consensus 40 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~ 119 (800)
T PRK13208 40 YSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELT 119 (800)
T ss_pred EEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHH
Confidence 33444 8999999999999999999999994 4677777655554 21 134
Q ss_pred HHHHHHHHHHHHHcCCC--CCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 323 KEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 323 ~~~~~~I~~~L~wLGl~--pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
.++.+.|.++++.||+. |+..++.++ |.........+|.++|++|.
T Consensus 120 ~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 169 (800)
T PRK13208 120 DEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYR 169 (800)
T ss_pred HHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeee
Confidence 46788999999999985 445443333 33333344568999999883
No 84
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.44 E-value=0.0037 Score=69.16 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=55.3
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeec----C-Ccc-c----------ccH
Q 006869 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD----T-NPE-A----------EKK 323 (628)
Q Consensus 261 ~~~~~~h~~~~~~~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidD----t-D~~-r----------~~~ 323 (628)
.+.+.++++. .+.+.=..=.|||. |||||+.+ +.++..-...|...++=|-| | ||. + ...
T Consensus 22 ~~~l~~~l~~--~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~ 98 (408)
T PRK05912 22 EEELEEKLAK--EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVA 98 (408)
T ss_pred HHHHHHHhhC--CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHH
Confidence 5566677763 33322223367895 99999994 66666666666666666655 2 453 1 234
Q ss_pred HHHHHHHHHHHHcCCCCCC----ccCCcccHHH
Q 006869 324 EYIDHIEEIVQWMGWEPFK----ITYTSDYFQE 352 (628)
Q Consensus 324 ~~~~~I~~~L~wLGl~pd~----~~~qSd~~~~ 352 (628)
.+...|.+.+ +.|++|++ +.+||+.++.
T Consensus 99 ~n~~~i~~ql-~~~ld~~k~~~~i~~nsd~~~~ 130 (408)
T PRK05912 99 ENAETIKEQL-FKFLDFEKDGAEIVNNSDWLGK 130 (408)
T ss_pred HHHHHHHHHH-HHhcCcCcCcEEEEECCCcCCc
Confidence 4555565555 78898875 7788887653
No 85
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.44 E-value=0.00049 Score=72.09 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=97.9
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc-----------ccccHHHHHHHHHHHHHcCCC--CCC
Q 006869 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-----------EAEKKEYIDHIEEIVQWMGWE--PFK 342 (628)
Q Consensus 282 sPtG-~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~-----------~r~~~~~~~~I~~~L~wLGl~--pd~ 342 (628)
.||| .|||||+.. +.++..-...|..+++=|-|- || .....+....|..++..+|++ |++
T Consensus 7 ~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~d~~p~k 85 (273)
T cd00395 7 DPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQ 85 (273)
T ss_pred cCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcCcCCCcc
Confidence 5889 799999988 666666555555555534322 33 223445567788889999998 764
Q ss_pred --ccCCcccHH--HHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEE
Q 006869 343 --ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMK 418 (628)
Q Consensus 343 --~~~qSd~~~--~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk 418 (628)
+..||+... .+++++..| -|+.+-.++...-. |.+ |++
T Consensus 86 ~~i~~ns~~~~~~~~~~l~~~l-------~~~~~~~~l~~~~~------------------~k~-------------r~~ 127 (273)
T cd00395 86 ATLFNNSDWPGPLAHIQFLRDL-------GKHVYVNYMERKTS------------------FQS-------------RSE 127 (273)
T ss_pred eEEEEccccCCcccHHHHHHHH-------HccCcHHHHHhChH------------------HHH-------------Hhc
Confidence 778998764 345555443 35555555442210 000 000
Q ss_pred ecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhh-hccCCcceeecCccccccchhHHHHHHHhC-CCCCc
Q 006869 419 QDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIV-DSIENITHSLCTLEFETRRASYFWLLHALG-LYQPY 496 (628)
Q Consensus 419 ~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VD-D~~~~IThvirG~e~~~~~~~q~~L~~aLg-~~~P~ 496 (628)
+ ..++ .. ..||.-+=+..+- ..-.+.++++.|.|-..+-..=.-|++.++ ...|.
T Consensus 128 -~----~~~~-----~~-------------~~Yp~lQaaD~l~l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~ 184 (273)
T cd00395 128 -E----GISA-----TE-------------FTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARRFNGFTIAE 184 (273)
T ss_pred -C----CCCc-----hh-------------hhhHHHHHHHHHHHhcccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 0 0000 00 0133333222220 011345888888875544443344556664 56776
Q ss_pred eeeeee-ecCCCcccccccccc
Q 006869 497 VWEYSR-LNVSNTVMSKRKLNF 517 (628)
Q Consensus 497 ~~~~~~-Ln~~g~KLSKR~~~~ 517 (628)
....++ .+.+|.||||+.++.
T Consensus 185 ~l~~p~l~~l~G~KMSKS~~~~ 206 (273)
T cd00395 185 GLTIPLVTKLDGPKFGKSESGP 206 (273)
T ss_pred EEeeccccCCCCCcCCCCCCCC
Confidence 666676 478999999999864
No 86
>PLN02563 aminoacyl-tRNA ligase
Probab=97.43 E-value=0.00036 Score=84.46 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=69.3
Q ss_pred eEEEeCCCCCCc-CchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc----------------ccccHHHHHHHHHHHHH
Q 006869 275 VLTRFPPEPNGY-LHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQW 335 (628)
Q Consensus 275 v~tRFaPsPtG~-LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~----------------~r~~~~~~~~I~~~L~w 335 (628)
+++=-+|.|||. |||||+++.++.+.+||. ..|.-++.+--.|. .....++++.|.+.++.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 555557999996 999999999999999994 47887887777762 12356778999999999
Q ss_pred cCC--CCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 336 MGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 336 LGl--~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
||+ +|+..+..++ |...-.....+|.++|++|.
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~ 229 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQ 229 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 996 5655443333 33333344568999999883
No 87
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=97.34 E-value=0.0004 Score=84.72 Aligned_cols=95 Identities=25% Similarity=0.269 Sum_probs=70.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc---------c-----------------------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 320 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~---------r----------------------- 320 (628)
+++==||.|||.|||||+++..+-..+||. ..|.-++.+--+|.. +
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~ 142 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHH
Confidence 344458999999999999999999999994 478888887777731 1
Q ss_pred -ccHHHHHHHHHHHHHcCCC--CCCccC--CcccHHHHHHHHHHHHHcCCcccc
Q 006869 321 -EKKEYIDHIEEIVQWMGWE--PFKITY--TSDYFQELYELAVELIRRGHAYVD 369 (628)
Q Consensus 321 -~~~~~~~~I~~~L~wLGl~--pd~~~~--qSd~~~~~~e~a~~Li~~G~AY~C 369 (628)
-..+|...|.+.++.||+. |+..++ ..+|....+....+|.++|+.|..
T Consensus 143 ~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~ 196 (995)
T PTZ00419 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRD 196 (995)
T ss_pred HHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 0256788889999999964 555443 333444455666799999998843
No 88
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=97.32 E-value=0.00048 Score=82.89 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=67.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc---------------------------------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE--------------------------------- 319 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~--------------------------------- 319 (628)
+++=-||.|||.|||||+++..+-..+||. ..|..++.+--.|..
T Consensus 39 ~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~ 118 (861)
T TIGR00392 39 IFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCR 118 (861)
T ss_pred EEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHH
Confidence 455568999999999999999999999994 467777765555410
Q ss_pred cccHHHHHHHHHHHHHcCC--CCCCccCCcc--cHHHHHHHHHHHHHcCCcccc
Q 006869 320 AEKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (628)
Q Consensus 320 r~~~~~~~~I~~~L~wLGl--~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~C 369 (628)
....++++.+.+.++.||+ +|+..+...+ |...-.....+|.++|++|..
T Consensus 119 ~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr~ 172 (861)
T TIGR00392 119 EFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRG 172 (861)
T ss_pred HHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEeec
Confidence 1233567888999999999 6777554444 222222334589999998843
No 89
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.
Probab=97.30 E-value=0.0065 Score=70.24 Aligned_cols=160 Identities=21% Similarity=0.287 Sum_probs=117.3
Q ss_pred hHHHHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCC-------CCCchhHHHHH
Q 006869 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN-------ALVHRPTLLLY 81 (628)
Q Consensus 10 ~~~~~~f~-~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~-------~~~~r~~l~~~ 81 (628)
++..+.|. ..|||+.-|.-++.+. .+.-+++++...+. -++...+.|.+....++.. ...|...|+..
T Consensus 449 ~~~~~r~~~~ygls~~~A~~l~~~~-~~~~fe~~~~~~~~---~~~~~an~l~~~~~~l~~~~~~~~~~~~~~l~~l~~~ 524 (620)
T TIGR00134 449 EEKKERIMREYGLSEDLASQLVKSN-YVDEFEALTEKFRV---DPTVIASLLAYTLRELRREGHDIDGLELRHLRDAIKL 524 (620)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhch-HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHH
Confidence 34455554 6899999999888885 66666666655442 2466666665554333321 13578889999
Q ss_pred HhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHh
Q 006869 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRK 161 (628)
Q Consensus 82 I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~ 161 (628)
|.+|+|.. .++...++.+-..+ -+.++.-+..|... +|.++|++.|+++|++|.+.+.+.+-+ .+|.+||+|.+
T Consensus 525 ~~~g~is~-~~~k~vl~~~~~~~---~~~~~iiee~gL~q-lsdeel~~iV~evI~en~~~V~~~~~k-~~G~lmGqVMk 598 (620)
T TIGR00134 525 LEVGKIAK-EGLREILKCMCDEP---LAAEDAARKLKLKL-LAEEEIESIIQEIIEENLDMISERGEG-AMGPLMGQAMG 598 (620)
T ss_pred HHcCCCcH-HHHHHHHHHHHhCC---CCHHHHHHHcCCcC-CCHHHHHHHHHHHHHhChHhhhccCHh-HHHHHHHHHHH
Confidence 99999975 67777888766543 25677999999654 899999999999999998877765533 48999999977
Q ss_pred hCCC-CChhhhHHHHHHHH
Q 006869 162 RLPW-ADPKIVKQLIDARM 179 (628)
Q Consensus 162 ~LkW-Ad~~~vK~~vd~~~ 179 (628)
.++= |||+.|.+.|.+.+
T Consensus 599 ~tkGkAdp~~V~~lLke~L 617 (620)
T TIGR00134 599 RLRGKADGKVVNRILRKKL 617 (620)
T ss_pred HhcCCCCHHHHHHHHHHHH
Confidence 6544 99999999887665
No 90
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=97.26 E-value=0.00061 Score=82.02 Aligned_cols=92 Identities=27% Similarity=0.308 Sum_probs=67.0
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCcc------------------c--------------cc
Q 006869 277 TRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------A--------------EK 322 (628)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~~------------------r--------------~~ 322 (628)
+==+|.+||.|||||+++.++-..+|| +..|.-++.+-.+|.. + -.
T Consensus 38 ~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~ 117 (861)
T TIGR00422 38 DIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWK 117 (861)
T ss_pred EeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHH
Confidence 333899999999999999999999999 4578888888777721 0 13
Q ss_pred HHHHHHHHHHHHHcCCC--CCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 323 KEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 323 ~~~~~~I~~~L~wLGl~--pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
.+|...|.+.++.||+. |+..++..+ |...-.....+|.++|+.|.
T Consensus 118 ~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~ 167 (861)
T TIGR00422 118 EESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYR 167 (861)
T ss_pred HHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeee
Confidence 56788899999999964 555444433 22223344468999999884
No 91
>PLN02486 aminoacyl-tRNA ligase
Probab=97.25 E-value=0.0032 Score=69.04 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=49.4
Q ss_pred CCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC----C---cccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHH
Q 006869 282 EPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----N---PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (628)
Q Consensus 282 sPtG-~LHIGharaal~n~l~Ar~~~G~~iLRidDt----D---~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~ 351 (628)
.||| .|||||+-.+.+.-.+-+..|..+++-|.|- . ...+..++......++-.+|++|++ +..++++..
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 7898 5999999988865555555566777767761 0 1122334455566677779999975 556666652
Q ss_pred -HHHHHHHH
Q 006869 352 -ELYELAVE 359 (628)
Q Consensus 352 -~~~e~a~~ 359 (628)
.+|..+.+
T Consensus 161 ~~~~~~~~~ 169 (383)
T PLN02486 161 GAFYKNMVK 169 (383)
T ss_pred HhHHHHHHH
Confidence 34444433
No 92
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=97.25 E-value=0.00051 Score=84.13 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=67.9
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc---------c-----------------------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 320 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~---------r----------------------- 320 (628)
+++==||.|||.|||||+++.++-+.++|. ..|.-++.+--+|.. +
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~ 130 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHH
Confidence 344448999999999999999999999994 478877777777621 1
Q ss_pred -ccHHHHHHHHHHHHHcCCC--CCCccC--CcccHHHHHHHHHHHHHcCCccc
Q 006869 321 -EKKEYIDHIEEIVQWMGWE--PFKITY--TSDYFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 321 -~~~~~~~~I~~~L~wLGl~--pd~~~~--qSd~~~~~~e~a~~Li~~G~AY~ 368 (628)
-..++.+.|.+.++.||+. |+..++ ..+|.........+|.++|..|.
T Consensus 131 ~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr 183 (1052)
T PRK14900 131 AWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYR 183 (1052)
T ss_pred HHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 0245678889999999964 555443 33344444455578999999885
No 93
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.20 E-value=0.00072 Score=81.82 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=66.5
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------------ccc-------ccH
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------------PEA-------EKK 323 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD----------------------~~r-------~~~ 323 (628)
+++==||.+||.|||||+++.++-..++|. ..|..++.+--.| ++. ...
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~ 131 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYAL 131 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHH
Confidence 344448999999999999999999999984 4677666554444 221 234
Q ss_pred HHHHHHHHHHHHcCC--CCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 324 EYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 324 ~~~~~I~~~L~wLGl--~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
++.+.+.++++.||+ +|+..++..+ |.........+|.++|+.|.
T Consensus 132 ~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~ 180 (912)
T PRK05743 132 EQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK 180 (912)
T ss_pred HHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 567888999999999 7877554443 33333344568999999885
No 94
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.19 E-value=0.0077 Score=66.12 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=52.6
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----------CcccccHHHHHHH
Q 006869 260 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----------NPEAEKKEYIDHI 329 (628)
Q Consensus 260 ~~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt----------D~~r~~~~~~~~I 329 (628)
|.+-|++.|+. +.+.+.=..=.|||.+||||.-.-.++|..-...|..+++=|-|. |++ ........+
T Consensus 53 ~~eel~~~l~~-~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~-~i~~~~~~~ 130 (383)
T PTZ00126 53 QPEELRELLKL-KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLE-KIRKVGEYF 130 (383)
T ss_pred CHHHHHHHHhc-CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHH-HHHHHHHHH
Confidence 45666666643 333333334468899999993211122222234466666656554 222 234445556
Q ss_pred HHHHHHcCCCCCC--ccCCcccHH
Q 006869 330 EEIVQWMGWEPFK--ITYTSDYFQ 351 (628)
Q Consensus 330 ~~~L~wLGl~pd~--~~~qSd~~~ 351 (628)
...+..+|++|++ +.+||+++.
T Consensus 131 ~~~~~A~GlDp~k~~i~~qS~~v~ 154 (383)
T PTZ00126 131 IEVWKAAGMDMDNVRFLWASEEIN 154 (383)
T ss_pred HHHHHHhCCCccceEEEECChhhh
Confidence 6678899999985 778998654
No 95
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0004 Score=82.03 Aligned_cols=92 Identities=25% Similarity=0.361 Sum_probs=65.7
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEE---eeecC-------------CcccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYL---RYDDT-------------NPEAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iL---RidDt-------------D~~r~~~~~~~~I~~~L~wL 336 (628)
+++=-=|-|||.||+||.|++.+...+||. ..|.=|| =+|-+ ||..-...+++.+.+.|+.|
T Consensus 37 yvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~l 116 (814)
T COG0495 37 YVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSL 116 (814)
T ss_pred EEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHh
Confidence 444455899999999999999999999993 3454444 33333 56667788899999999999
Q ss_pred CCC--CCCccCCcccHHHHHHHH----HHHHHcCCccc
Q 006869 337 GWE--PFKITYTSDYFQELYELA----VELIRRGHAYV 368 (628)
Q Consensus 337 Gl~--pd~~~~qSd~~~~~~e~a----~~Li~~G~AY~ 368 (628)
|+. |+.....+|= .||.+. .+|.++|++|.
T Consensus 117 G~siDW~Ref~T~Dp--~Yyk~~QW~F~kL~ekGL~y~ 152 (814)
T COG0495 117 GFSIDWRREFATCDP--EYYKWIQWQFLKLYEKGLAYR 152 (814)
T ss_pred CCccccccceecCCc--cHHHHHHHHHHHHHHCCCEEe
Confidence 986 5543222221 245443 48999999994
No 96
>PLN02843 isoleucyl-tRNA synthetase
Probab=97.19 E-value=0.00073 Score=82.19 Aligned_cols=93 Identities=25% Similarity=0.200 Sum_probs=64.7
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC-----------------------cccc-------cH
Q 006869 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-----------------------PEAE-------KK 323 (628)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD-----------------------~~r~-------~~ 323 (628)
++==||.+||.|||||+++.++-..++|. ..|.-++.+--.| +... ..
T Consensus 36 i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~ 115 (974)
T PLN02843 36 LHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAK 115 (974)
T ss_pred EeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHH
Confidence 33448999999999999999999999984 3566565554444 2111 34
Q ss_pred HHHHHHHHHHHHcCC--CCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 324 EYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 324 ~~~~~I~~~L~wLGl--~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
++.+.+.+.++.||+ +|+..++..+ |.........+|.++|+.|.
T Consensus 116 ~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr 164 (974)
T PLN02843 116 KTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYR 164 (974)
T ss_pred HHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 556778899999999 7877655443 22222344568999999773
No 97
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated
Probab=97.17 E-value=0.0089 Score=69.19 Aligned_cols=165 Identities=20% Similarity=0.284 Sum_probs=119.5
Q ss_pred hHHHHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCC-------CCCchhHHHHH
Q 006869 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN-------ALVHRPTLLLY 81 (628)
Q Consensus 10 ~~~~~~f~-~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~-------~~~~r~~l~~~ 81 (628)
++..+.|. ..|||++-|.-++.++. +.-+.+++.. . .-++...+.|.+....++.. ...+...|+..
T Consensus 456 ~~~~~r~~~~ygls~~~a~~L~~~~~-~~~f~~~~~~-~---~~~~~~anwl~~~~~~l~~~~~~~~~i~~~~l~~l~~~ 530 (630)
T PRK04028 456 EEKVERLIKEYGLSEELAEQLAYSER-LDLFEELVKK-G---VDPTLIASTLENTLKELRREGVDVENITDEHIEEVFKL 530 (630)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCch-HHHHHHHHHh-C---CCHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHHHHH
Confidence 34555564 48999999977777765 6666666543 1 23567777777765433322 23567888999
Q ss_pred HhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHh
Q 006869 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRK 161 (628)
Q Consensus 82 I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~ 161 (628)
|.+|+|.. .+....++-+-+. ..-+.++.-++.|.. .+|.++|++.|+++|++|...+.+.+ ...+|.+||+|.+
T Consensus 531 ~~~~~is~-~~ak~v~~~~~~~--~~~~~~~IIee~gl~-qiSD~eL~~iV~evIaenpk~V~~gk-~K~~G~lmGqVMk 605 (630)
T PRK04028 531 VSEGKIAK-EAIEEILKELAEN--PGKSAEEAAEELGLK-GLSEEEVEKIIDEIVEENIDFVKEKG-MGAFGPLMGEVMA 605 (630)
T ss_pred HHcCCccH-HHHHHHHHHHHhc--CCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHhHhccC-HhHHHHHHHHHHH
Confidence 99999987 5566677654433 246789999999976 57999999999999999877665533 3458999999977
Q ss_pred hCC-CCChhhhHHHHHHHHHHhcC
Q 006869 162 RLP-WADPKIVKQLIDARMYELLG 184 (628)
Q Consensus 162 ~Lk-WAd~~~vK~~vd~~~~~llg 184 (628)
..+ =|||+.|.+.|.+.+.+.+|
T Consensus 606 ~tkGkAdp~~V~~llke~L~~~~~ 629 (630)
T PRK04028 606 ELRGKADGKLVSEILREKLKEILN 629 (630)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhc
Confidence 644 49999999999988766654
No 98
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.16 E-value=0.00017 Score=75.96 Aligned_cols=177 Identities=18% Similarity=0.197 Sum_probs=101.5
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Ccc----cccHHHHHHHHHH--HHHcCCCCCC--ccCCcc
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHIEEI--VQWMGWEPFK--ITYTSD 348 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~----r~~~~~~~~I~~~--L~wLGl~pd~--~~~qSd 348 (628)
.|||.|||||+-+. .++......|...++=|-|. |+. |........+..+ +-.+|++|++ +..||+
T Consensus 13 ~PTg~lHlG~l~~~-~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~k~~i~~~s~ 91 (292)
T PF00579_consen 13 DPTGDLHLGHLVPI-MKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPEKTEIFRQSD 91 (292)
T ss_dssp ESSSS-BHHHHHHH-HHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTTTEEEEEGHH
T ss_pred CCCCcccchHHHHH-HHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCccceEEEeCCC
Confidence 58899999998886 44555555888888877765 333 3444455555555 6688999975 778998
Q ss_pred cHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCC
Q 006869 349 YFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNM 428 (628)
Q Consensus 349 ~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~ 428 (628)
..... ++...|..- ++.-++..... |+++.. |++. ....++
T Consensus 92 ~~~~~-~~~~~l~~~-------~~~~~l~~~~~------------------~~~~~~----------~~~~---~~~~~~ 132 (292)
T PF00579_consen 92 WPEHM-ELWWFLSDV-------ARLFSLNRMLR------------------FKDVKK----------RLKN---GEGISL 132 (292)
T ss_dssp HHCHH-HHHHHHHHH-------HBHHHHHHHHH------------------HHHHHH----------HHSS---TTTSBH
T ss_pred ccccc-chhhhhccc-------ccccchhhhhh------------------hccccc----------cccc---ccCcce
Confidence 76443 544444322 22222222211 111110 0000 000000
Q ss_pred CceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCC----CCceeeeeee-
Q 006869 429 YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY----QPYVWEYSRL- 503 (628)
Q Consensus 429 ~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~----~P~~~~~~~L- 503 (628)
+ ...||.-+ +.|-...+.++++.|.|-..+-..-.-+++.++.. .|.....++|
T Consensus 133 ----------------~--~~~Yp~lQ---aaD~~~l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~ 191 (292)
T PF00579_consen 133 ----------------G--EFSYPLLQ---AADILLLKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLP 191 (292)
T ss_dssp ----------------H--HHHHHHHH---HHHHHHTTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBB
T ss_pred ----------------e--eEEccccc---ccceeeeccccccccchHHHHHHHHHHHHhhhcccccccCchheeecccc
Confidence 0 01255543 45555677779999988665554444556677776 8877777764
Q ss_pred cCCCc-ccccccccccc
Q 006869 504 NVSNT-VMSKRKLNFLV 519 (628)
Q Consensus 504 n~~g~-KLSKR~~~~lv 519 (628)
..+|. ||||+.++..|
T Consensus 192 ~l~G~~KMSKS~~ns~I 208 (292)
T PF00579_consen 192 GLDGQKKMSKSDPNSAI 208 (292)
T ss_dssp STTSSSBTTTTTTGGS-
T ss_pred ccCCccccCccCCccEE
Confidence 67888 99999988433
No 99
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=97.15 E-value=0.00089 Score=77.51 Aligned_cols=92 Identities=25% Similarity=0.285 Sum_probs=60.2
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc--------------------------c-------cc
Q 006869 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP--------------------------E-------AE 321 (628)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~--------------------------~-------r~ 321 (628)
+==||.+||.||+||+++..+-..+||. ..|..++..=-.|- + ..
T Consensus 28 ~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (601)
T PF00133_consen 28 HDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREW 107 (601)
T ss_dssp EE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHH
T ss_pred EeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcch
Confidence 3348999999999999999999999994 46776665444431 0 11
Q ss_pred cHHHHHHHHHHHHHcCC--CCCCccC--CcccHHHHHHHHHHHHHcCCccc
Q 006869 322 KKEYIDHIEEIVQWMGW--EPFKITY--TSDYFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 322 ~~~~~~~I~~~L~wLGl--~pd~~~~--qSd~~~~~~e~a~~Li~~G~AY~ 368 (628)
..++.+.+.+.++.||+ +|+..++ ..+|.........+|.++|..|.
T Consensus 108 ~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr 158 (601)
T PF00133_consen 108 AEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYR 158 (601)
T ss_dssp HHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEe
Confidence 34667888899999997 4665443 33333333445578999999885
No 100
>PLN02943 aminoacyl-tRNA ligase
Probab=97.14 E-value=0.0012 Score=80.31 Aligned_cols=95 Identities=24% Similarity=0.316 Sum_probs=69.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc-----------------------cc--------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE-----------------------AE-------- 321 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~-----------------------r~-------- 321 (628)
+++=-||.+||.|||||+++..+-..+||. ..|.-++.+--+|.. |+
T Consensus 91 ~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~ 170 (958)
T PLN02943 91 VIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWE 170 (958)
T ss_pred EEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 455558999999999999999999999994 578888877777721 00
Q ss_pred -cHHHHHHHHHHHHHcCC--CCCCccCCcc--cHHHHHHHHHHHHHcCCcccc
Q 006869 322 -KKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (628)
Q Consensus 322 -~~~~~~~I~~~L~wLGl--~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~C 369 (628)
..+|...|.+.++.||+ +|+..++..+ |...-.....+|.++|+.|..
T Consensus 171 ~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~ 223 (958)
T PLN02943 171 WKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQG 223 (958)
T ss_pred HHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 14567889999999998 5666554444 222233445689999998843
No 101
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=97.14 E-value=0.00086 Score=80.84 Aligned_cols=89 Identities=27% Similarity=0.309 Sum_probs=66.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc---------c-----------------------ccHHH
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A-----------------------EKKEY 325 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~---------r-----------------------~~~~~ 325 (628)
||.+||.|||||+++..+-..+||. ..|.-+|.+-.+|.. + -..+|
T Consensus 44 pP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~ 123 (874)
T PRK05729 44 PPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEES 123 (874)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999994 478888887777731 0 03567
Q ss_pred HHHHHHHHHHcCCC--CCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 326 IDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 326 ~~~I~~~L~wLGl~--pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
...|.+.++.||+. |+..++..+ +.........+|.++|..|.
T Consensus 124 ~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 170 (874)
T PRK05729 124 GGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYR 170 (874)
T ss_pred HHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEee
Confidence 78899999999975 555444443 32233344568999999883
No 102
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.06 E-value=0.0015 Score=71.68 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=58.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----Cc---ccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP---EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 352 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt----D~---~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~~ 352 (628)
.|||.+||||.-.++-+|.- .+.++.+++=|-|. ++ ......+...+..++-.+|++|++ +..||+.- .
T Consensus 10 qPSG~~HLGnylG~ik~wv~-lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~QS~v~-e 87 (398)
T PRK12283 10 RPTGRLHLGHYHGVLKNWVK-LQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQSKVP-E 87 (398)
T ss_pred CCCCcchHHHHHHHHHHHHH-HhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCCch-H
Confidence 57899999999999888874 34566766666665 21 233445556677888899999985 77899874 2
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHH
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEIK 377 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei~ 377 (628)
+-+.+ ..|.|.++--++.
T Consensus 88 h~eL~-------wil~~~t~~~~L~ 105 (398)
T PRK12283 88 HAELH-------LLLSMITPLGWLE 105 (398)
T ss_pred HHHHH-------HHHHhhccHHHHH
Confidence 22222 2356766655443
No 103
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=97.01 E-value=0.0011 Score=80.37 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=48.1
Q ss_pred CCcee-eeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 494 QPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 494 ~P~~~-~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
.|..| ++|++..+|.|||||+|+. .++..+.++ |.++++|.||+..|-...+..++...+++.
T Consensus 604 ~Pk~i~~~G~vl~~G~KMSKSlGNv---------------I~p~d~i~~-yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~ 667 (938)
T TIGR00395 604 WPRGIVVNGYVMLEGKKMSKSKGNV---------------LTLEQAVEK-FGADVARLYIADAAETVQDADWKESEVEGT 667 (938)
T ss_pred cCcEEEEeceEEeCCccccCcCCCC---------------CCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 35444 4688888999999999983 577777777 999999999998765444555666666655
Q ss_pred HH
Q 006869 573 IR 574 (628)
Q Consensus 573 ir 574 (628)
++
T Consensus 668 ~~ 669 (938)
T TIGR00395 668 IL 669 (938)
T ss_pred HH
Confidence 43
No 104
>PLN02381 valyl-tRNA synthetase
Probab=97.00 E-value=0.0015 Score=80.26 Aligned_cols=95 Identities=27% Similarity=0.337 Sum_probs=68.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc---------c-----------------------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE---------A----------------------- 320 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~---------r----------------------- 320 (628)
+++==+|.+||.|||||+++..+-+.++|. ..|.-++.+--+|.. +
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~ 210 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHH
Confidence 445558999999999999999999999994 467777777666620 0
Q ss_pred -ccHHHHHHHHHHHHHcCC--CCCCccCCcc--cHHHHHHHHHHHHHcCCcccc
Q 006869 321 -EKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (628)
Q Consensus 321 -~~~~~~~~I~~~L~wLGl--~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~C 369 (628)
-..+|...|.+.++.||+ +|+..++..+ |.........+|.++|+.|..
T Consensus 211 ~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 264 (1066)
T PLN02381 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRD 264 (1066)
T ss_pred HHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 024567788899999996 4666555444 222223444689999998854
No 105
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=97.00 E-value=0.0015 Score=79.69 Aligned_cols=94 Identities=23% Similarity=0.280 Sum_probs=67.2
Q ss_pred EEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc---------c------------------------c
Q 006869 276 LTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------E------------------------A 320 (628)
Q Consensus 276 ~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~---------~------------------------r 320 (628)
++==||.|||.||+||+++..+-..++|. ..|.-+++.=..|- + .
T Consensus 45 i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~ 124 (975)
T PRK06039 45 FYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRE 124 (975)
T ss_pred EeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHH
Confidence 33448999999999999999999999994 47887777665551 0 1
Q ss_pred ccHHHHHHHHHHHHHcCC--CCCCccCCcc--cHHHHHHHHHHHHHcCCcccc
Q 006869 321 EKKEYIDHIEEIVQWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (628)
Q Consensus 321 ~~~~~~~~I~~~L~wLGl--~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~C 369 (628)
...+|.+.+.+.++.||+ +|+..++..+ |.+.-.....+|.++|.+|..
T Consensus 125 ~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~ 177 (975)
T PRK06039 125 SVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKG 177 (975)
T ss_pred HHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEec
Confidence 234677888999999995 6776655544 222222334689999998843
No 106
>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated
Probab=96.97 E-value=0.017 Score=64.97 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=114.7
Q ss_pred hHHHHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHH-HHhhCCC---------CCCCchhHH
Q 006869 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPT---------NALVHRPTL 78 (628)
Q Consensus 10 ~~~~~~f~-~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~-latk~~~---------~~~~~r~~l 78 (628)
++..+.|. ..||++.-|.-++.++.++.-+.+++.. +. .++...+.|.+ +...++. -...+...|
T Consensus 299 ~~~~~rl~~~ygls~~~a~~L~~~~~~~~~fe~~~~~-~~---~~k~~anwl~~el~~~l~~~~~~~~~~~i~~~~l~~L 374 (474)
T PRK05477 299 DAKRARFVEEYGLSEYDARVLTSDKELADYFEAVVAA-GA---DAKLAANWLMGELLGLLNEEGIEIEESPITPEQLAEL 374 (474)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHH
Confidence 34455565 5899999999999998999888887654 22 34566665544 4333321 123578889
Q ss_pred HHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhH
Q 006869 79 LLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLF 156 (628)
Q Consensus 79 ~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll 156 (628)
+..|.+|+|.+ .+....+.-+-.. ..+.++.-++.|.+.+-..++|++.|+++|++|.+.+.+-| -..-+|-||
T Consensus 375 i~lv~~g~Is~-~~ak~vl~~~~~~---~~~~~~ii~~~gl~~isd~~~l~~iv~evi~~np~~v~~~~~Gk~~~~~~lv 450 (474)
T PRK05477 375 IKLIDDGTISG-KIAKEVFEEMLET---GGDPDEIVEEKGLKQISDEGALEAIVDEVLAANPKAVEDYKAGKEKALGFLV 450 (474)
T ss_pred HHHHHcCCccH-HHHHHHHHHHHhc---CCCHHHHHHHcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHH
Confidence 99999999987 5567677655443 46789999999987644444999999999999999877642 123378888
Q ss_pred HHHHhh-CCCCChhhhHHHHHHH
Q 006869 157 AHVRKR-LPWADPKIVKQLIDAR 178 (628)
Q Consensus 157 ~~vr~~-LkWAd~~~vK~~vd~~ 178 (628)
|+|-+. =-=|||+.|.+.+.+.
T Consensus 451 G~vMk~t~GkAdp~~v~~ll~e~ 473 (474)
T PRK05477 451 GQVMKATKGKANPKLVNELLKEK 473 (474)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHh
Confidence 887444 4569999999887653
No 107
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=96.97 E-value=0.0016 Score=80.52 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=68.0
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc---------cc------------------------cc
Q 006869 278 RFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP---------EA------------------------EK 322 (628)
Q Consensus 278 RFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~---------~r------------------------~~ 322 (628)
==||.+||.|||||+++..+-+.++|. ..|.-+++.--+|- ++ ..
T Consensus 108 ~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~ 187 (1205)
T PTZ00427 108 DGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIV 187 (1205)
T ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHH
Confidence 338999999999999999999999994 47888888877772 00 12
Q ss_pred HHHHHHHHHHHHHcC--CCCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 323 KEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 323 ~~~~~~I~~~L~wLG--l~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
.+|.+.+.+.++.|| ++|+..++..+ |...-.....+|.++|+.|.
T Consensus 188 ~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~~L~ekGlIYr 237 (1205)
T PTZ00427 188 LKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237 (1205)
T ss_pred HHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 356678888999999 77887655544 33333344568999999883
No 108
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.93 E-value=0.0024 Score=68.83 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=46.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC----Cc--ccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHHHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT----NP--EAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 353 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt----D~--~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~~~ 353 (628)
.|||.+||||.-.++-+|..-... ..+++=|-|. ++ ..+..++...+..++-.+|++|++ +.+||+..+ +
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS~~~~-~ 86 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQSHVPE-H 86 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeCCCch-h
Confidence 588999999999777777544332 3444445543 21 123344555567777789999985 778998643 3
Q ss_pred HHHH
Q 006869 354 YELA 357 (628)
Q Consensus 354 ~e~a 357 (628)
.+++
T Consensus 87 ~el~ 90 (333)
T PRK00927 87 AELA 90 (333)
T ss_pred HHHH
Confidence 4433
No 109
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=96.87 E-value=0.0066 Score=67.22 Aligned_cols=87 Identities=18% Similarity=0.113 Sum_probs=57.3
Q ss_pred CCCCcCchhHHHHHHHHHHHHHH-cCCEEEEeeecC-------CcccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKE-RGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~-~~G~~iLRidDt-------D~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~ 351 (628)
.|||.+||||...++-||+.... .+..++.=|-|. ||++.. .....+..++-.+|++|++ +++||+--
T Consensus 10 qPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr-~~~~e~aa~~LA~GlDPek~~if~QSdvp- 87 (431)
T PRK12284 10 TTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQ-RSTLEIAATWLAAGLDPERVTFYRQSDIP- 87 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHH-HHHHHHHHHHHHhCCCccceEEEECCcch-
Confidence 68999999999999989988754 344555555554 444333 3344466677788999986 77899964
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHH
Q 006869 352 ELYELAVELIRRGHAYVDHQTPEEIK 377 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C~cs~eei~ 377 (628)
.+.+++-.| .|.++.-++.
T Consensus 88 eh~EL~wiL-------~~it~~g~L~ 106 (431)
T PRK12284 88 EIPELTWLL-------TCVAGKGLLN 106 (431)
T ss_pred hHHHHHHHH-------HhhhhHHHHH
Confidence 344444332 4655554444
No 110
>PLN02882 aminoacyl-tRNA ligase
Probab=96.83 E-value=0.0021 Score=79.39 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=66.4
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc----------------c-----------------ccHH
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE----------------A-----------------EKKE 324 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~----------------r-----------------~~~~ 324 (628)
||.+||.+||||+++.++-+.++|. ..|.-+++.--+|-. + .+..
T Consensus 46 PPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~ 125 (1159)
T PLN02882 46 PPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTR 125 (1159)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999994 478888877766620 0 1345
Q ss_pred HHHHHHHHHHHcC--CCCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 325 YIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 325 ~~~~I~~~L~wLG--l~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
|.+.+.+.++.|| ++|+..++..+ |.+.-.....+|.++|..|.
T Consensus 126 ~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr 173 (1159)
T PLN02882 126 YSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYK 173 (1159)
T ss_pred HHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 7788889999999 67877655444 33333344568999999883
No 111
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=96.80 E-value=0.037 Score=63.12 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=113.6
Q ss_pred hHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHH-HHHhhCCC---------CCCCchhHHH
Q 006869 10 SEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYPT---------NALVHRPTLL 79 (628)
Q Consensus 10 ~~~~~~f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy-~latk~~~---------~~~~~r~~l~ 79 (628)
++..+.|...||++.-|.-++.++.++.-+++++.. +. -++...+.|. .|...++. -..+|...|+
T Consensus 367 ~~~~~Rl~~~gLs~~dA~~L~~~~~~a~ffe~~~~~-~~---~~k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi 442 (544)
T PLN02751 367 EAKRRRYENMGLSMQDVLFLANDKNVAEFFDATLAK-GA---DAKLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELI 442 (544)
T ss_pred HHHHHHHHHcCCCHHHHHHHHcCcHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHH
Confidence 344666788999999999999999888888887764 21 2455554432 33222221 1235789999
Q ss_pred HHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhc---cccchhhhH
Q 006869 80 LYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR---YRTNVGDLF 156 (628)
Q Consensus 80 ~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~r---y~~n~g~ll 156 (628)
.+|.+|+|....- ...+.=+-. ..-+.+++-++-|...+-.+++|++.|+++|++|.+.+.+-| -+. +|-||
T Consensus 443 ~li~~g~Is~~~A-K~vl~~~~~---~~~~p~~iiee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k~-~g~lv 517 (544)
T PLN02751 443 ASIKDGTISGKIG-KEILPELLA---KGGTVKGLVEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKL-QGFFA 517 (544)
T ss_pred HHHHcCCccHHHH-HHHHHHHHh---CCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHH-HHHHH
Confidence 9999999987443 445544433 235789999999988654488999999999999999877644 233 67888
Q ss_pred HHHHhhCC-CCChhhhHHHHHHHH
Q 006869 157 AHVRKRLP-WADPKIVKQLIDARM 179 (628)
Q Consensus 157 ~~vr~~Lk-WAd~~~vK~~vd~~~ 179 (628)
|+|-+..+ =|||+.|.+.+.+.+
T Consensus 518 GqVMK~tkGkAnp~~v~~iL~e~L 541 (544)
T PLN02751 518 GQVMKASKGKANPGLLNKILMEKL 541 (544)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 88755543 589999998887654
No 112
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=96.71 E-value=0.033 Score=66.12 Aligned_cols=159 Identities=16% Similarity=0.269 Sum_probs=113.8
Q ss_pred HHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHH-HHHHhhCCCC-------CCCchhHHHHHHh
Q 006869 13 LELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLL-YTVATKYPTN-------ALVHRPTLLLYIV 83 (628)
Q Consensus 13 ~~~f~-~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LL-y~latk~~~~-------~~~~r~~l~~~I~ 83 (628)
.+.|. ..||++.-|.-++.++.++.-+++++... . -++...+.| ..|...++.. ..+|...|+..|.
T Consensus 600 ~~Rlv~eyGLs~~dA~~L~~d~~la~yFE~~v~~~-~---~pk~aANWl~~El~~~Lne~~i~~~~l~pe~LaeLv~lV~ 675 (771)
T PRK14703 600 FDRYLSELGLNEEDARTLARDPALAAFFEAALAAG-K---SPVQLANWVVNDLAGLLRDRELAALPFTPAALARLVALVD 675 (771)
T ss_pred HHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcC-C---CHHHHHHHHHHHHHHHHhcCCCccCCCCHHHHHHHHHHHH
Confidence 44454 58999999999999999988888887642 1 234454443 3333333321 2367889999999
Q ss_pred hCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHHh
Q 006869 84 SSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRK 161 (628)
Q Consensus 84 ~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~vr~ 161 (628)
+|+|.. .+....++-+-.. .-+.++.-++.|.+.+-..++|++.|+++|++|.+.+.+-| -..-+|-|||+|=+
T Consensus 676 ~g~IS~-~~AK~VL~~m~~~---~~~p~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK~kalgfLVGqVMK 751 (771)
T PRK14703 676 AGRIST-RIAKDVLAELAAS---GGDPEAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMR 751 (771)
T ss_pred cCCccH-HHHHHHHHHHHhc---CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999976 6667777766543 34788999999998766668999999999999999877644 12236777777744
Q ss_pred hC-CCCChhhhHHHHHHHH
Q 006869 162 RL-PWADPKIVKQLIDARM 179 (628)
Q Consensus 162 ~L-kWAd~~~vK~~vd~~~ 179 (628)
.. ==|||+.|.+.+.+.+
T Consensus 752 ~tkGKAdP~~V~elLke~L 770 (771)
T PRK14703 752 ETGGKANPQQVRELLQKKL 770 (771)
T ss_pred HhCCCCCHHHHHHHHHHHh
Confidence 43 3489999988887553
No 113
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.0049 Score=73.18 Aligned_cols=91 Identities=30% Similarity=0.329 Sum_probs=66.5
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCc-----------------------ccc---------cH
Q 006869 278 RFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNP-----------------------EAE---------KK 323 (628)
Q Consensus 278 RFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~-----------------------~r~---------~~ 323 (628)
==||++||-||||||.+..+-..++|. ..|.-+|=+-.+|. .|+ .+
T Consensus 39 ~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~ 118 (877)
T COG0525 39 TPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKE 118 (877)
T ss_pred CCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHH
Confidence 348999999999999999998888884 46777776666662 121 45
Q ss_pred HHHHHHHHHHHHcCCC--CCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 324 EYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 324 ~~~~~I~~~L~wLGl~--pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
++...|.+.++.||+. |+..++..| +.....+.-.+|.++|..|+
T Consensus 119 e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 119 ESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceee
Confidence 7788999999999986 444433333 33344556679999999994
No 114
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=96.63 E-value=0.0043 Score=75.57 Aligned_cols=94 Identities=21% Similarity=0.154 Sum_probs=64.1
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC-------------------------ccc-------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN-------------------------PEA------- 320 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD-------------------------~~r------- 320 (628)
++.==||.+||.|||||+++..+-..++|. ..|..++.+=..| +..
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~ 136 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECRE 136 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHH
Confidence 344448999999999999999999999994 3566665544443 110
Q ss_pred ccHHHHHHHHHHHHHcCCC--CCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 321 EKKEYIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 321 ~~~~~~~~I~~~L~wLGl~--pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
...++++.+.+.++.||+. |+..+...+ |.........+|.++|++|.
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr 188 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR 188 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 1235567788899999985 666554444 22222344468999999873
No 115
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=96.50 E-value=0.065 Score=60.48 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=111.0
Q ss_pred HHHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHH-HHHhhCCC---------CCCCchhHHHH
Q 006869 12 ILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYPT---------NALVHRPTLLL 80 (628)
Q Consensus 12 ~~~~f-~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy-~latk~~~---------~~~~~r~~l~~ 80 (628)
..+.| ...||++.-|.-++.++.++.-+++++.... -++...+.|. .+...++. -...|...|+.
T Consensus 304 ~~~R~~~~ygls~~~a~~L~~~~~~~~~fe~~~~~~~----~~k~~anwl~~el~~~l~~~~~~i~~~~l~p~~l~~Li~ 379 (478)
T TIGR00133 304 KRIRLKKEYGLSEQDAKVLTSDLTLADYFEEVVKLIG----DPKLAANWICIELLGVLNKLQISLAECGLKPSDLAELIK 379 (478)
T ss_pred HHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHCCCCHhhcCCCHHHHHHHHH
Confidence 33444 5789999999999999999998888765421 2455555443 22222211 12357889999
Q ss_pred HHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHh--hccccchhhhHHH
Q 006869 81 YIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFAH 158 (628)
Q Consensus 81 ~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~--~ry~~n~g~ll~~ 158 (628)
.|.+|+|.. .+....+.-+-.. .-+.+++-++-|.+.+-..++|++.|.++|++|.+++.+ .+-.--+|-|+|+
T Consensus 380 lv~~g~Is~-~~ak~vl~~~~~~---~~~~~~ii~~~gl~~isd~~~l~~iv~evl~~np~~v~~~k~Gk~k~~~~lvGq 455 (478)
T TIGR00133 380 LIKEGKISG-KSAKQLIEEMLEN---GGDPSKLIEELGLEQISDEKELIKIIEEVIKENPKEVEKYLSGKERALKFLVGQ 455 (478)
T ss_pred HHHcCCCcH-HHHHHHHHHHHhc---CCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHH
Confidence 999999987 5556666655443 357899999999886544558999999999999887765 1222336777877
Q ss_pred HHhh-CCCCChhhhHHHHHHH
Q 006869 159 VRKR-LPWADPKIVKQLIDAR 178 (628)
Q Consensus 159 vr~~-LkWAd~~~vK~~vd~~ 178 (628)
|=+. =-=|||+.|.+.+.+.
T Consensus 456 vMk~t~GkA~p~~v~~~l~~~ 476 (478)
T TIGR00133 456 VMKRTRGRANPQLVNEILKEM 476 (478)
T ss_pred HHHHhCCCCCHHHHHHHHHHH
Confidence 7433 4469999998887654
No 116
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0026 Score=72.63 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=66.7
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEeee----------------cCCcccccHHHHHHHHHHH
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRYD----------------DTNPEAEKKEYIDHIEEIV 333 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~--~G~~iLRid----------------DtD~~r~~~~~~~~I~~~L 333 (628)
+.+++.--=|.|+|-|||||.|.+.++...||.+ .|.=|+.-- .++|..-...-++.+.+.|
T Consensus 57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql 136 (876)
T KOG0435|consen 57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQL 136 (876)
T ss_pred CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHH
Confidence 3457777778999999999999999999999954 565554322 2334444566788888999
Q ss_pred HHcCCC--CCC-ccCCcccHHHHHHHH----HHHHHcCCcccc
Q 006869 334 QWMGWE--PFK-ITYTSDYFQELYELA----VELIRRGHAYVD 369 (628)
Q Consensus 334 ~wLGl~--pd~-~~~qSd~~~~~~e~a----~~Li~~G~AY~C 369 (628)
..||+. ||. +.-.. ..||.+- .+|.++|.||.-
T Consensus 137 ~~lg~~FDWdrEiSTC~---PdYYKWTQwiFlkLfe~GLAYq~ 176 (876)
T KOG0435|consen 137 KSLGISFDWDREISTCE---PDYYKWTQWIFLKLFEKGLAYQA 176 (876)
T ss_pred HHcCcccccccccccCC---cchhHHHHHHHHHHHHhhhhhcc
Confidence 999985 664 32222 2445433 489999999953
No 117
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=96.14 E-value=0.026 Score=66.13 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=52.1
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc----ccccHHHHHHHH
Q 006869 260 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIE 330 (628)
Q Consensus 260 ~~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~----~r~~~~~~~~I~ 330 (628)
|.+-|+.-++. +..++.=..=.|||.+||||..-..++.....+.|..+++=|-|. |+ .+........+.
T Consensus 19 ~~eeL~~ll~~-~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~ 97 (682)
T PTZ00348 19 QESELRNLIEK-KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLI 97 (682)
T ss_pred CHHHHHHHHhc-CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHH
Confidence 34545444433 333333334467899999994222344444446677776666665 22 111222234567
Q ss_pred HHHHHcCCCCCC--ccCCcccH
Q 006869 331 EIVQWMGWEPFK--ITYTSDYF 350 (628)
Q Consensus 331 ~~L~wLGl~pd~--~~~qSd~~ 350 (628)
.++..+|++|++ +.+||+.+
T Consensus 98 ~~~lA~GlDpeK~~~~~qSd~i 119 (682)
T PTZ00348 98 EVWKAAGMDMDKVLFLWSSEEI 119 (682)
T ss_pred HHHHHcCCCccceEEEECcHhh
Confidence 788899999985 77899844
No 118
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.0036 Score=70.30 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=81.8
Q ss_pred CccccccchhHHHHHH---HhCCCCCceeeee---eecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHH
Q 006869 473 TLEFETRRASYFWLLH---ALGLYQPYVWEYS---RLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTST 546 (628)
Q Consensus 473 G~e~~~~~~~q~~L~~---aLg~~~P~~~~~~---~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~pe 546 (628)
|-.|..++. +|+-+ ++-+|....|..| |+..=.. -..++.++. +. ..++..++..||.|+
T Consensus 206 gITHviRG~--d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~-~~g~kLSKr----------~~-~~~~~~~~~~G~~~~ 271 (472)
T COG0008 206 GITHVLRGE--DHLDNTPRQIWLYEALGWPPPVYAHLPLLLN-EDGKKLSKR----------KG-AVSIGEYRVEGWLPP 271 (472)
T ss_pred CCceEEech--hhccCCHHHHHHHHHcCCCCCcEEEeeeeec-CCCCeecCc----------cC-ccccchhhhcCCCcH
Confidence 444555544 44432 4556777777754 4443333 222233321 11 467888999999999
Q ss_pred HHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceeeccceeEEec
Q 006869 547 SINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (628)
Q Consensus 547 aI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~dp~kl~i~n 597 (628)
++.+|++.+||+.....++.+.+++++.+|+...+..+++.||..||.+.|
T Consensus 272 al~~~~allg~~~~~~~~e~f~~~~~~~~fd~~~~~~~~~~fd~~kL~~~n 322 (472)
T COG0008 272 ALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDWLN 322 (472)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHhhhhhhhhhcccccccHHHhHhhh
Confidence 999999999999876668899999999999999999999999999998888
No 119
>PLN02959 aminoacyl-tRNA ligase
Probab=95.51 E-value=0.03 Score=69.11 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=40.2
Q ss_pred eeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 499 EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 499 ~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
.+|++..+|.||||++|+. .+...+.++ |.++++|.+|+..+-...+..+....+.++
T Consensus 708 v~G~V~~~G~KMSKSkGNv---------------I~p~diI~k-yGADalRl~la~~~~~~~D~nF~~k~~n~~ 765 (1084)
T PLN02959 708 CNGHLMLNSEKMSKSTGNF---------------LTLRQAIEE-FSADATRFALADAGDGVDDANFVFETANAA 765 (1084)
T ss_pred EccEEecCCcCccccCCCc---------------CCHHHHHHH-hCchHHHHHHhhcCCccCCCCccHHHHHHH
Confidence 4566678999999999984 566677776 999999999987654333434443333333
No 120
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=95.45 E-value=0.034 Score=67.78 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=11.0
Q ss_pred CCcccHHHHHHH-HHHHHHcCCcc
Q 006869 345 YTSDYFQELYEL-AVELIRRGHAY 367 (628)
Q Consensus 345 ~qSd~~~~~~e~-a~~Li~~G~AY 367 (628)
|+......-.+. .+.|+++|.+.
T Consensus 396 ~~G~~v~ear~~i~~~L~~~g~~~ 419 (938)
T TIGR00395 396 YKGMKVSEAKEKVKADLIDAGLAD 419 (938)
T ss_pred cCCcCHHHhHHHHHHHHHHCCCce
Confidence 333333333333 35666666653
No 121
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.34 E-value=0.035 Score=65.42 Aligned_cols=94 Identities=30% Similarity=0.366 Sum_probs=68.9
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCCcc------------------------cc---------
Q 006869 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTNPE------------------------AE--------- 321 (628)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD~~------------------------r~--------- 321 (628)
.==||+.||-||||||-++.+-...||. ..|.-++=+--||.. |+
T Consensus 80 ~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~W 159 (995)
T KOG0432|consen 80 PLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEW 159 (995)
T ss_pred ecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHH
Confidence 3347888999999999999999999994 467777777777631 11
Q ss_pred cHHHHHHHHHHHHHcCC--CCCCccCCccc-HHH-HHHHHHHHHHcCCccccC
Q 006869 322 KKEYIDHIEEIVQWMGW--EPFKITYTSDY-FQE-LYELAVELIRRGHAYVDH 370 (628)
Q Consensus 322 ~~~~~~~I~~~L~wLGl--~pd~~~~qSd~-~~~-~~e~a~~Li~~G~AY~C~ 370 (628)
.++|-..|.+.|+.||- +|+..+|.-|- +.. --+...+|-++|..|+..
T Consensus 160 k~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~ 212 (995)
T KOG0432|consen 160 KEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRAN 212 (995)
T ss_pred HHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecC
Confidence 35677889999999996 57766555442 222 235667999999999754
No 122
>PLN02886 aminoacyl-tRNA ligase
Probab=94.94 E-value=0.05 Score=59.85 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=59.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-------CcccccHHHHHHHHHHHHHcCCCCCC--ccC
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITY 345 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-------D~~r~~~~~~~~I~~~L~wLGl~pd~--~~~ 345 (628)
|.+=| .|||.+||||...++-+|..-.. +..+++=|-|. |++ +..++...+..++-.+|++|++ ++.
T Consensus 49 v~sGi--qPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~~~~~-~lr~~~~~~~a~~lA~GlDP~ks~if~ 124 (389)
T PLN02886 49 VVSGV--QPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLPHDPR-ELGKATRSTAAIYLACGIDPSKASVFV 124 (389)
T ss_pred EEEEE--CCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCCCCHH-HHHHHHHHHHHHHHHcCcCccceEEEE
Confidence 44444 56799999999888888866554 55555556664 222 3344555667788889999985 778
Q ss_pred CcccHHHHHHHHHHHHHcCCccccCCCHHHHH
Q 006869 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (628)
Q Consensus 346 qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~ 377 (628)
||+.. .+.+++-. +.|..+.-++.
T Consensus 125 QS~v~-e~~eL~wi-------l~~~t~~g~L~ 148 (389)
T PLN02886 125 QSHVP-AHAELMWL-------LSCSTPIGWLN 148 (389)
T ss_pred eCCCc-hhHHHHHH-------HHhhCcHHHHH
Confidence 99854 33444322 46666655554
No 123
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=94.52 E-value=0.082 Score=64.23 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=44.5
Q ss_pred eeeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHH
Q 006869 497 VWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (628)
Q Consensus 497 ~~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~i 573 (628)
...+|++..+|.|||||+||. .+...+.++ |.++++|.||+..+-...+..++...+....
T Consensus 565 v~~hG~vl~~G~KMSKS~GNv---------------Vdp~eii~~-yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~ 625 (897)
T PRK12300 565 IVVNGFVLLEGKKMSKSKGNV---------------IPLRKAIEE-YGADVVRLYLTSSAELLQDADWREKEVESVR 625 (897)
T ss_pred EEEcceEEECCccccCcCCCC---------------CCHHHHHHH-cChHHHHHHHHhCCCCCCCCccCHHHHHHHH
Confidence 344688767999999999984 566677776 9999999999986655555555555555443
No 124
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=94.10 E-value=0.2 Score=47.56 Aligned_cols=102 Identities=25% Similarity=0.298 Sum_probs=72.1
Q ss_pred CchhHHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHh--hcccc
Q 006869 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRT 150 (628)
Q Consensus 73 ~~r~~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~--~ry~~ 150 (628)
.+...|+.++.+|+|.. .+....+..+-++ .-+.++.-+..|.+..-++++|++.|+++|++|.+++.+ .+=.-
T Consensus 43 ~~l~~li~l~~~~~Is~-~~ak~ll~~~~~~---~~~~~~ii~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k 118 (148)
T PF02637_consen 43 EHLAELINLLEDGKISK-KSAKELLRELLEN---GKSPEEIIEENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKK 118 (148)
T ss_dssp HHHHHHHHHHHTTSSGH-HHHHHHHHHHHHH---TS-HHHHHHHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TT
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHHc---CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHH
Confidence 57888999999999986 6778888877654 357789999999988777799999999999999776542 22223
Q ss_pred chhhhHHHHHhhCC-CCChhhhHHHHHHH
Q 006869 151 NVGDLFAHVRKRLP-WADPKIVKQLIDAR 178 (628)
Q Consensus 151 n~g~ll~~vr~~Lk-WAd~~~vK~~vd~~ 178 (628)
-+|-|||+|-+..+ =|||+.|++.+.+.
T Consensus 119 ~~~~LvGqvMk~t~G~adp~~v~~~l~~~ 147 (148)
T PF02637_consen 119 AIGFLVGQVMKETKGRADPKEVKELLKEK 147 (148)
T ss_dssp CCHHHHHHHHHCTTS-C-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 36788888865544 69999999988764
No 125
>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=1.5 Score=49.45 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=102.6
Q ss_pred HHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHH-HHhhCC---------CCCCCchhHHHHHHhhC
Q 006869 16 FLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYP---------TNALVHRPTLLLYIVSS 85 (628)
Q Consensus 16 f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~-latk~~---------~~~~~~r~~l~~~I~~g 85 (628)
-...|||+.-|.-++.++.++.-+.++...... .+...+.+.+ |+..+. +-..++..-|+..|.+|
T Consensus 311 ~~~~gls~~dA~~L~~d~~la~~fe~~~~~~~~----~k~~anW~~~el~~~Ln~~~~~i~~~~~~p~~la~Li~li~~g 386 (483)
T COG0064 311 IKEYGLSEYDARVLTSDKELADYFEEAVKAGAD----AKLAANWLTNELLGLLNKAGITLEESPLTPEQLAELIKLIDEG 386 (483)
T ss_pred HHHcCCCHHHHHHHHcCHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhcCCChhhcCCCHHHHHHHHHHHHcC
Confidence 448999999999999999988888777543331 3333333211 121111 12245788999999999
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhcc--ccchhhhHHHH-Hhh
Q 006869 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRY--RTNVGDLFAHV-RKR 162 (628)
Q Consensus 86 klks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry--~~n~g~ll~~v-r~~ 162 (628)
+|.+..--+....-+.+. .-+..+.-++-|...+-.+++|+++|.++|++|...+++-|= ..-+|=++|+| |+.
T Consensus 387 ~IS~k~AK~~v~~~~~~~---~~~p~~iie~~gL~qisD~~~l~~~V~evia~Np~~ve~yk~GK~~~~~f~vGQVMk~T 463 (483)
T COG0064 387 TISGKIAKELVFEILANG---GKDPEEIIEEKGLVQISDEGELEKIVDEVLAENPKAVEDYKSGKEKALGFLVGQVMKAT 463 (483)
T ss_pred CccHHHHHHHHHHHHHcc---CCCHHHHHHhcCccccCCHHHHHHHHHHHHHHCHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 998755444455544443 257899999999999777779999999999999987765432 11234444444 222
Q ss_pred CCCCChhhhHHHHHHH
Q 006869 163 LPWADPKIVKQLIDAR 178 (628)
Q Consensus 163 LkWAd~~~vK~~vd~~ 178 (628)
=-=|||..+...|-..
T Consensus 464 ~GkAnP~~v~~ll~~~ 479 (483)
T COG0064 464 KGKANPQQVNELLKEK 479 (483)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3357887776665543
No 126
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=93.75 E-value=0.54 Score=44.77 Aligned_cols=101 Identities=26% Similarity=0.350 Sum_probs=75.6
Q ss_pred CchhHHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCH-HHHHHHHHHHHHhhHhHHHhhcc--c
Q 006869 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSS-EDIELTVNEVFEENKNTILELRY--R 149 (628)
Q Consensus 73 ~~r~~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~-E~I~~~V~~~i~~~k~~l~~~ry--~ 149 (628)
++...|+..|.+|+|+. .+....++.+-.. .-+..++-++.|.+- +|. +++++.|+++|++|.+.+.+-|= .
T Consensus 42 ~~l~~li~lv~~g~It~-~~ak~vl~~~~~~---~~~~~~ii~~~~l~~-isd~~el~~~v~~vi~~~~~~v~~~~~g~~ 116 (147)
T smart00845 42 EHLAELLKLIEDGTISG-KIAKEVLEELLES---GKSPEEIVEEKGLKQ-ISDEGELEAIVDEVIAENPKAVEDYRAGKK 116 (147)
T ss_pred HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHc---CCCHHHHHHHcCCcc-CCCHHHHHHHHHHHHHHCHHHHHHHHCCHH
Confidence 57888999999999986 5566677766543 246889999999875 776 59999999999999887654321 1
Q ss_pred cchhhhHHHHHhh-CCCCChhhhHHHHHHH
Q 006869 150 TNVGDLFAHVRKR-LPWADPKIVKQLIDAR 178 (628)
Q Consensus 150 ~n~g~ll~~vr~~-LkWAd~~~vK~~vd~~ 178 (628)
-.+|.+||+|-+. =-=|||+.|.+.|.+.
T Consensus 117 k~~~~l~G~vMk~~~G~ad~~~v~~~l~~~ 146 (147)
T smart00845 117 KALGFLVGQVMKATRGKADPKLVNELLKEK 146 (147)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 2378888888554 3348999998887653
No 127
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=93.72 E-value=0.16 Score=61.57 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=51.8
Q ss_pred HhCCCCC--ceeeeeeec-CCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccc
Q 006869 489 ALGLYQP--YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIR 565 (628)
Q Consensus 489 aLg~~~P--~~~~~~~Ln-~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~ 565 (628)
++....| .++-||++. .+|.|||||+|+. .+...+.++ |.++++|.|++..+....+..++
T Consensus 502 ~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~---------------i~p~~~i~~-ygaDalR~~l~~~~~~~~d~~f~ 565 (861)
T TIGR00422 502 ALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNV---------------IDPLDVIEK-YGADALRFTLASLVTPGDDINFD 565 (861)
T ss_pred HhcCCCchheEEEeeEEECCCCCCCCcCCCCC---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceec
Confidence 3433445 456678765 5999999999983 566677776 99999999999888765666677
Q ss_pred hhhHHHHHHhhhc
Q 006869 566 LDRLEYHIREELN 578 (628)
Q Consensus 566 ~~~le~~ir~~~~ 578 (628)
...+++. +.|.+
T Consensus 566 ~~~~~~~-~~~~n 577 (861)
T TIGR00422 566 WKRVESA-RNFLN 577 (861)
T ss_pred HHHHHHH-HHHHH
Confidence 6666654 33433
No 128
>PLN02943 aminoacyl-tRNA ligase
Probab=93.61 E-value=0.11 Score=63.43 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=47.3
Q ss_pred ceeeeeee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHH
Q 006869 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 496 ~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
.+|-|+.+ +.+|.||||++|+. .+...+.++ |.|+++|.||+..+. ..+..++...|++ .+
T Consensus 569 ~v~~hg~v~~~~G~KMSKS~GN~---------------i~p~~~i~~-ygaDalR~~l~~~~~-~~d~~fs~~~l~~-~~ 630 (958)
T PLN02943 569 YVYLHGLIRDSQGRKMSKTLGNV---------------IDPLDTIKE-FGTDALRFTLALGTA-GQDLNLSTERLTS-NK 630 (958)
T ss_pred eEEEeccEECCCCCcccCcCCCC---------------CCHHHHHHh-cCChHHHHHHHhCCC-CCCccccHHHHHH-HH
Confidence 47778875 68999999999984 566777776 999999999998665 3444566666655 34
Q ss_pred hhhc
Q 006869 575 EELN 578 (628)
Q Consensus 575 ~~~~ 578 (628)
.+.+
T Consensus 631 ~~~~ 634 (958)
T PLN02943 631 AFTN 634 (958)
T ss_pred HHHH
Confidence 4443
No 129
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=93.42 E-value=0.12 Score=63.37 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=48.1
Q ss_pred eeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHh
Q 006869 497 VWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (628)
Q Consensus 497 ~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~ 575 (628)
.+.||+ ++.+|+|||||+|+. .+...+.++ |.++++|.|+++.+....+..++...+-+.++.
T Consensus 579 v~~hG~Vld~~G~KMSKSlGNv---------------IdP~dli~~-yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~ 642 (975)
T PRK06039 579 VLVHGHVLDEDGQKMSKSLGNY---------------VDPFEVFDK-YGADALRWYLLSSSAPWEDLRFSEDGVREVVRK 642 (975)
T ss_pred EEEeeeEECCCCCCcCCCCCCc---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceechhHHHHHHHH
Confidence 455676 456999999999984 466677776 999999999999887555556666664445555
Q ss_pred hhc
Q 006869 576 ELN 578 (628)
Q Consensus 576 ~~~ 578 (628)
+++
T Consensus 643 ~l~ 645 (975)
T PRK06039 643 FLL 645 (975)
T ss_pred HHH
Confidence 553
No 130
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=92.78 E-value=0.45 Score=45.42 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=57.4
Q ss_pred chhHHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchh
Q 006869 74 HRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVG 153 (628)
Q Consensus 74 ~r~~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g 153 (628)
.+.-+..|-..|+..--.+..+=+..|.+.- .-.+|+|||+..|.++|++.... . .-++|
T Consensus 57 r~ea~e~y~~agR~dlae~e~~Ei~iL~~yL---------------P~~lseeEi~~~v~~~i~e~ga~----~-~k~mG 116 (143)
T PF09424_consen 57 RKEAAEQYEKAGRPDLAEKEQAEIEILEEYL---------------PKQLSEEEIEAIVEEAIAELGAS----S-MKDMG 116 (143)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS--------------------HHHHHHHHHHHHHHTT------B-GGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------------cCCCCHHHHHHHHHHHHHHhCCC----C-hHHHH
Confidence 4566667777777655566667777777662 23799999999999999986553 2 23699
Q ss_pred hhHHHHHhhCC-CCChhhhHHHHHHH
Q 006869 154 DLFAHVRKRLP-WADPKIVKQLIDAR 178 (628)
Q Consensus 154 ~ll~~vr~~Lk-WAd~~~vK~~vd~~ 178 (628)
.+|+.|+..++ =+||+.|...|-..
T Consensus 117 ~vMk~l~~~~~G~~Dgk~vs~~Vk~~ 142 (143)
T PF09424_consen 117 KVMKALMAKLKGRADGKKVSQLVKEA 142 (143)
T ss_dssp HHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHhh
Confidence 99999998754 58999988887654
No 131
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=92.28 E-value=0.31 Score=58.62 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=43.1
Q ss_pred ceeeeeee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHH
Q 006869 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (628)
Q Consensus 496 ~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~ 571 (628)
.++.||++ +.+|+|||||+|+. .+...+.+. |.++++|.|++ .+-...+...+...+..
T Consensus 519 ~v~~hg~v~~~~G~KMSKS~GN~---------------i~p~~~i~~-yg~D~lR~~l~-~~~~~~d~~fs~~~~~~ 578 (800)
T PRK13208 519 NIMISGMVLDPDGKKMSKSKGNV---------------VTPEELLEK-YGADAVRYWAA-SARLGSDTPFDEKQVKI 578 (800)
T ss_pred eEEEeeEEECCCCCCCCCCCCCC---------------CCHHHHHHH-cCccHHHHHHh-cCCCCCCceecHHHHHH
Confidence 56777875 57999999999983 577777777 99999999998 44333444455555544
No 132
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=92.06 E-value=0.35 Score=58.77 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=48.7
Q ss_pred ceeeeeee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHH
Q 006869 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 496 ~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
..+-||++ +.+|.|||||+|+. .+...+.++ |.++|+|.|++..+-...+..++...++.. +
T Consensus 506 ~v~~hG~v~d~~G~KMSKSlGNv---------------IdP~dvi~~-yGaDalR~~ll~~~~~~~Di~fs~~~l~~~-~ 568 (874)
T PRK05729 506 DVYIHGLVRDEQGRKMSKSKGNV---------------IDPLDLIDK-YGADALRFTLAALASPGRDIRFDEERVEGY-R 568 (874)
T ss_pred heEEeeeEECCCCCCcccCCCCC---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCceeCHHHHHHH-H
Confidence 56677875 47999999999984 455666666 899999999998765555656777776554 3
Q ss_pred hhhcc
Q 006869 575 EELNK 579 (628)
Q Consensus 575 ~~~~~ 579 (628)
.|.+.
T Consensus 569 ~~~nk 573 (874)
T PRK05729 569 NFANK 573 (874)
T ss_pred HHHHH
Confidence 44443
No 133
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=91.93 E-value=0.25 Score=60.16 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=53.7
Q ss_pred CchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----c------------------------------------ccccHH
Q 006869 287 LHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----P------------------------------------EAEKKE 324 (628)
Q Consensus 287 LHIGharaal~n~l~Ar~--~~G~~iLRidDtD----~------------------------------------~r~~~~ 324 (628)
|||||+++..+-..+||. ..|.-+++.--.| | ......
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 799999999999999994 4677776632222 1 011223
Q ss_pred HHHHHHHHHHHcCCC--CCCccCCcccHHHHHH----HHHHHHHcCCccc
Q 006869 325 YIDHIEEIVQWMGWE--PFKITYTSDYFQELYE----LAVELIRRGHAYV 368 (628)
Q Consensus 325 ~~~~I~~~L~wLGl~--pd~~~~qSd~~~~~~e----~a~~Li~~G~AY~ 368 (628)
|...+.++++.||+. |+..+...+ ..|++ ...+|.++|++|.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~d--p~y~~~v~w~F~~L~ekGliyr 128 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTD--PEYSKFIEWQFRKLKEKGLIVK 128 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCC--hhHHHHHHHHHHHHHHCCCEec
Confidence 457789999999985 666544444 23333 3468999999984
No 134
>PLN02843 isoleucyl-tRNA synthetase
Probab=90.94 E-value=0.62 Score=57.29 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=43.0
Q ss_pred Cceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHc--------CCCHHHHHHHHHHcCCCCCCcccc
Q 006869 495 PYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR--------GVTSTSINAFVQGIGISRSDSLIR 565 (628)
Q Consensus 495 P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~--------G~~peaI~~fl~~lG~t~~~~~~~ 565 (628)
-.+|.||+ ++.+|.||||+.||. .+...+.+. -|.++++|.|+++..++. +..++
T Consensus 596 k~v~~HG~vld~~G~KMSKSlGNv---------------I~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~-d~~~s 659 (974)
T PLN02843 596 KSVLTHGFVLDEKGFKMSKSLGNV---------------VDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTG-DVLIG 659 (974)
T ss_pred ceEEEeccEECCCCCCcCCCCCCc---------------CCHHHHHhhccccccccccChHHHHHHHHhcccCC-CceeC
Confidence 35677886 567999999999984 455566662 288999999999866654 33455
Q ss_pred hhhHH
Q 006869 566 LDRLE 570 (628)
Q Consensus 566 ~~~le 570 (628)
...|+
T Consensus 660 ~~~l~ 664 (974)
T PLN02843 660 PQILK 664 (974)
T ss_pred HHHHH
Confidence 55555
No 135
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=90.89 E-value=0.47 Score=58.72 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=45.1
Q ss_pred eeeeeeec-CCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHh
Q 006869 497 VWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (628)
Q Consensus 497 ~~~~~~Ln-~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~ 575 (628)
.+-||++. .+|.||||++|+. .....+.++ |.++++|.||+..+-...+..++...++.. +.
T Consensus 525 V~~hG~v~d~~G~KMSKSkGNv---------------IdP~dvIe~-yGaDalR~~L~~~~~~g~D~~fs~~~l~~~-~~ 587 (1052)
T PRK14900 525 VYLHPMVRDEKGQKMSKTKGNV---------------IDPLVITEQ-YGADALRFTLAALTAQGRDIKLAKERIEGY-RA 587 (1052)
T ss_pred eEecccEECCCCCCccCCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhcCCCCCCCcccHHHHHHH-HH
Confidence 45567764 4999999999984 345556665 899999999998755445555666666443 34
Q ss_pred hhc
Q 006869 576 ELN 578 (628)
Q Consensus 576 ~~~ 578 (628)
|.+
T Consensus 588 f~n 590 (1052)
T PRK14900 588 FAN 590 (1052)
T ss_pred HHH
Confidence 444
No 136
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.51 E-value=2.3 Score=47.16 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHHHhCCCCCceeeeeee-cCCCccccccccc
Q 006869 486 LLHALGLYQPYVWEYSRL-NVSNTVMSKRKLN 516 (628)
Q Consensus 486 L~~aLg~~~P~~~~~~~L-n~~g~KLSKR~~~ 516 (628)
|.+.+|...+...+.|+| +.+|+||||+.++
T Consensus 200 l~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 200 LIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred HHHHhCCCCeEEEEeccccCCCCCcccccCCC
Confidence 345678877877888875 7899999999986
No 137
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.48 E-value=0.7 Score=55.52 Aligned_cols=95 Identities=15% Similarity=-0.008 Sum_probs=59.5
Q ss_pred cceeecCcccccc-chhHHHHHHHhCCCCCceee--eee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcC
Q 006869 467 ITHSLCTLEFETR-RASYFWLLHALGLYQPYVWE--YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRG 542 (628)
Q Consensus 467 IThvirG~e~~~~-~~~q~~L~~aLg~~~P~~~~--~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G 542 (628)
.+-.+.|-|.+-- ..++..+.-+|.-..|+..- ||+ ++.+|+||||++||. ....++.++
T Consensus 479 t~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNv---------------IDP~d~I~~- 542 (877)
T COG0525 479 TDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNV---------------IDPLDVIDK- 542 (877)
T ss_pred CccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCc---------------CCHHHHHHH-
Confidence 3344566554421 11222223355556776544 455 688999999999984 233455665
Q ss_pred CCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhc
Q 006869 543 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (628)
Q Consensus 543 ~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~ 578 (628)
|..+|+|.+++.++-...+-.++...++.. +.|.+
T Consensus 543 yGaDAlRf~la~~~~~G~Di~~~~~~~~~~-rnF~n 577 (877)
T COG0525 543 YGADALRFTLASLASPGRDINFDEKRVEGY-RNFLN 577 (877)
T ss_pred hChHHHHHHHHhccCCCcccCcCHHHHHHH-HHHHH
Confidence 889999999998877666667777777643 44444
No 138
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=90.12 E-value=1.2 Score=49.00 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=49.1
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCC-cCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Ccc-----c------ccH
Q 006869 261 KEVLDKHLEVTGGNVLTRFPPEPNG-YLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 323 (628)
Q Consensus 261 ~~~~~~h~~~~~~~v~tRFaPsPtG-~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~-----r------~~~ 323 (628)
.+.++++++. .-.+.+ .=.||| .|||||+.++. +...-...|...++=|-|- ||. | +..
T Consensus 20 ~~~l~~ll~~-~~~vy~--G~dPTg~~lHlGh~v~l~-~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~ 95 (377)
T TIGR00234 20 EEELLKLLER-KIKLYV--GFDPTAPSLHLGHLVPLL-KLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQ 95 (377)
T ss_pred HHHHHHHhcC-CCEEEE--eeCCCCCCccHHHHHHHH-HHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHH
Confidence 5678888766 323333 337899 89999998754 3333344554544445554 331 1 223
Q ss_pred HHHHHHHHHHHHcCCCCCC--ccCCcccHH
Q 006869 324 EYIDHIEEIVQWMGWEPFK--ITYTSDYFQ 351 (628)
Q Consensus 324 ~~~~~I~~~L~wLGl~pd~--~~~qSd~~~ 351 (628)
++...|.. .-..|++|+. +.++|+.+.
T Consensus 96 ~n~~~i~~-~la~gld~~k~~iv~ns~w~~ 124 (377)
T TIGR00234 96 ENAENIKK-QIARFLDFEKAKFVNNSEWLL 124 (377)
T ss_pred HHHHHHHH-HHHHhCChhheEEEECchhcC
Confidence 34444443 3356888764 677887654
No 139
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=90.06 E-value=0.43 Score=57.85 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=44.6
Q ss_pred eeeeeee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHh
Q 006869 497 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIRE 575 (628)
Q Consensus 497 ~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~ 575 (628)
++-|+++ +.+|.|||||+|+. .+...+.++ |.++++|.|++... ...+..++...+....+.
T Consensus 598 v~~hG~vl~~~G~KMSKSkGNv---------------I~p~d~i~~-yGaDalR~~ll~~~-~~~D~~fs~~~l~~~~~~ 660 (861)
T TIGR00392 598 VITHGFTLDEKGRKMSKSLGNV---------------VDPLKVINK-YGADILRLYVASSD-PWEDLRFSDEILKQVVEK 660 (861)
T ss_pred hEecceEECCCCCCcCCCCCCC---------------CCHHHHHHH-cCHHHHHHHHHhCC-CCCCceECHHHHHHHHHH
Confidence 3446764 56999999999983 566677776 99999999999873 333445666777665543
Q ss_pred h
Q 006869 576 E 576 (628)
Q Consensus 576 ~ 576 (628)
+
T Consensus 661 ~ 661 (861)
T TIGR00392 661 Y 661 (861)
T ss_pred H
Confidence 3
No 140
>PLN02959 aminoacyl-tRNA ligase
Probab=89.80 E-value=0.68 Score=57.53 Aligned_cols=9 Identities=44% Similarity=0.648 Sum_probs=4.8
Q ss_pred HHHHHcCCc
Q 006869 358 VELIRRGHA 366 (628)
Q Consensus 358 ~~Li~~G~A 366 (628)
+.|+++|.+
T Consensus 502 ~~L~~~G~l 510 (1084)
T PLN02959 502 KKLIEAGQA 510 (1084)
T ss_pred HHHHhCCCc
Confidence 455556643
No 141
>PHA01735 hypothetical protein
Probab=88.39 E-value=0.82 Score=38.12 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=44.5
Q ss_pred hHHHHHHhhCCCCCHHhHHHHHHHHHhcCC--CCCCHHHHHHHcCCCceeCHHHHHHH
Q 006869 76 PTLLLYIVSSKIKTPAQLEAAFSFFASTGS--ENFEVDEFEEACGVGVEVSSEDIELT 131 (628)
Q Consensus 76 ~~l~~~I~~gklks~~Ql~aA~~yl~~~~~--~~id~~~Fe~~cGVGv~vT~E~I~~~ 131 (628)
..+.+.|.+|.-+ ++.|.||++||++|.- -+.|-.-+.+-.|+=-.+|.|+|++.
T Consensus 19 ~El~~RiksgeAT-taDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 19 NELLSRIKSGEAT-TADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred HHHHHHHhcCccc-HHHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHHhc
Confidence 3578899999876 5999999999999852 24677788888898888999988753
No 142
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=87.94 E-value=0.84 Score=55.78 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=39.7
Q ss_pred eeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHH
Q 006869 498 WEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (628)
Q Consensus 498 ~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~ 571 (628)
+.||+ ++.+|.||||++||. .+...+.++ |.++++|.|++...+ ..+..++...|.+
T Consensus 580 l~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaDalR~~ll~~~~-~~D~~~s~~~l~~ 637 (912)
T PRK05743 580 LTHGFTVDGKGRKMSKSLGNV---------------IDPQDVIKK-YGADILRLWVASTDY-SGDVRISDEILKQ 637 (912)
T ss_pred EEeeeEECCCCCCCCCCCCCc---------------CCHHHHHHh-cChHHHHHHHHhcCC-CCCeeecHHHHHH
Confidence 44676 566999999999984 455566665 999999999997333 3343455555544
No 143
>PLN02882 aminoacyl-tRNA ligase
Probab=87.93 E-value=0.81 Score=57.22 Aligned_cols=68 Identities=7% Similarity=-0.006 Sum_probs=42.0
Q ss_pred CCCCCce-eeeeee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCC-cccchh
Q 006869 491 GLYQPYV-WEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD-SLIRLD 567 (628)
Q Consensus 491 g~~~P~~-~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~-~~~~~~ 567 (628)
|...|.. ..||++ +.+|.|||||+||. .....+.++ |.++++|.|++.......+ ..++..
T Consensus 594 ~~~pfk~VivhG~vlde~G~KMSKSlGNv---------------IdP~evi~~-YGADaLR~~Ll~s~~~~~~d~~fs~~ 657 (1159)
T PLN02882 594 DKPAFKNLICNGLVLAEDGKKMSKSLKNY---------------PDPNEVIDK-YGADALRLYLINSPVVRAEPLRFKEE 657 (1159)
T ss_pred CCCCcceeEEccEEECCCCCCcccCCCCC---------------CCHHHHHHH-hCcHHHHHHHHhCCcccCcCcccCHH
Confidence 4443332 335764 55899999999984 233455555 8899999999976654222 234444
Q ss_pred hHHHHHH
Q 006869 568 RLEYHIR 574 (628)
Q Consensus 568 ~le~~ir 574 (628)
.+.+.++
T Consensus 658 ~v~~~~~ 664 (1159)
T PLN02882 658 GVFGVVK 664 (1159)
T ss_pred HHHHHHH
Confidence 4444433
No 144
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=87.36 E-value=1.4 Score=39.17 Aligned_cols=39 Identities=54% Similarity=0.909 Sum_probs=29.1
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCccc
Q 006869 277 TRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 320 (628)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r 320 (628)
+.|++++ |++|+||...+-- |......+++.|.|.++..
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~----a~~~~d~~i~~i~~~~~~~ 40 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICR----AKGIADQCVVRIDDNPPVK 40 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHH----HHHhCCcEEEEEcCCCccc
Confidence 5789999 9999999997422 3333467889999877644
No 145
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=86.69 E-value=1.6 Score=53.72 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=41.1
Q ss_pred ceeeeeee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHH
Q 006869 496 YVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (628)
Q Consensus 496 ~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~ 571 (628)
..+-||++ +.+|.||||++|+. .....+.+. |.++++|.|++...++ .+..++...|.+
T Consensus 616 ~V~~HG~vld~~G~KMSKSlGNv---------------IdP~~ii~~-yGaD~lRl~lls~~~~-~D~~fs~~~l~~ 675 (961)
T PRK13804 616 AVLTHGFTLDEKGEKMSKSLGNT---------------VSPQDVIKQ-SGADILRLWVASVDYS-DDQRIGKEILKQ 675 (961)
T ss_pred hEEEeccEECCCCCCccCCCCCc---------------CCHHHHHHh-cCHHHHHHHHHhCCCC-CCcccCHHHHHH
Confidence 56778874 56999999999984 344555654 9999999999975443 233455555444
No 146
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=85.72 E-value=1.4 Score=54.48 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCcCch--hHHHHHHHHHHHHHHcCCEEEEeeecCC-----c----ccccHHHHHHHHHHHHHcCCC
Q 006869 284 NGYLHI--GHAKAMFVDFGLAKERGGYCYLRYDDTN-----P----EAEKKEYIDHIEEIVQWMGWE 339 (628)
Q Consensus 284 tG~LHI--Gharaal~n~l~Ar~~~G~~iLRidDtD-----~----~r~~~~~~~~I~~~L~wLGl~ 339 (628)
||..|+ ||.- -.|.+++.||-..+-=|++-- . ...+.+.-+.|.+.|+-.|+-
T Consensus 313 TG~V~~~Pahd~---~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l 376 (995)
T PTZ00419 313 TGAVKITPAHDP---NDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLL 376 (995)
T ss_pred CCCeEeCCCCCh---HHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCE
Confidence 777776 3432 346777877644443333211 1 223556677888999988874
No 147
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=85.30 E-value=1.9 Score=54.24 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=42.8
Q ss_pred eeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCC-CCCcccchhhHHHHHHh
Q 006869 498 WEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS-RSDSLIRLDRLEYHIRE 575 (628)
Q Consensus 498 ~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t-~~~~~~~~~~le~~ir~ 575 (628)
.-||+ |+.+|.|||||+|+.. || ..+.++ |.++|+|.|+++.+.. ..+..++...+.+..+.
T Consensus 708 lvHG~Vld~dG~KMSKSlGNvI----------DP-----~evI~k-YGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~ 771 (1205)
T PTZ00427 708 ICNGLVLASDGKKMSKRLKNYP----------DP-----LYILDK-YGADSLRLYLINSVAVRAENLKFQEKGVNEVVKS 771 (1205)
T ss_pred EEccEEEcCCCCCcccCCCCCC----------CH-----HHHHHh-cCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHH
Confidence 33566 5679999999999841 33 334444 8899999999976442 23334555666666666
Q ss_pred hh
Q 006869 576 EL 577 (628)
Q Consensus 576 ~~ 577 (628)
|+
T Consensus 772 ~l 773 (1205)
T PTZ00427 772 FI 773 (1205)
T ss_pred HH
Confidence 65
No 148
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.03 E-value=1.9 Score=45.58 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=46.5
Q ss_pred CCCCCcCchhHHHHHHHHHHHHH---HcCCEEEEeeecCC-------cccccHHHHHHHHHHHHHcCCCCCC--ccCCcc
Q 006869 281 PEPNGYLHIGHAKAMFVDFGLAK---ERGGYCYLRYDDTN-------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSD 348 (628)
Q Consensus 281 PsPtG~LHIGharaal~n~l~Ar---~~~G~~iLRidDtD-------~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd 348 (628)
--|||.+||||-.-++-+|.--. ..+-.+++-|-|.. |. .-.++.-.+...|-..|++|.+ ..+||+
T Consensus 20 IQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~-~lrq~~~dm~A~lLAcGIdp~Ks~lF~QS~ 98 (347)
T KOG2713|consen 20 IQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPA-ELRQATHDMAASLLACGIDPEKSSLFVQSD 98 (347)
T ss_pred cCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChH-HHHHHHHHHHHHHHHhccCcccceeeeecc
Confidence 36999999999999999986544 23335777777763 32 3334444444456677999986 567887
Q ss_pred c
Q 006869 349 Y 349 (628)
Q Consensus 349 ~ 349 (628)
-
T Consensus 99 V 99 (347)
T KOG2713|consen 99 V 99 (347)
T ss_pred c
Confidence 4
No 149
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.61 E-value=1.9 Score=52.38 Aligned_cols=91 Identities=23% Similarity=0.261 Sum_probs=61.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHHc--CCEEEEeeecCC-------------------------cc----c---ccHHH
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAKER--GGYCYLRYDDTN-------------------------PE----A---EKKEY 325 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar~~--~G~~iLRidDtD-------------------------~~----r---~~~~~ 325 (628)
||.-||.+|||||.+=++-..+-|.+ .|..+-|+=-=| .+ . ...++
T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~ 136 (933)
T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQ 136 (933)
T ss_pred CCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 89999999999999999888877743 344333322111 11 1 13356
Q ss_pred HHHHHHHHHHcCC--CCCCcc--CCcccHHHHHHHHHHHHHcCCccccC
Q 006869 326 IDHIEEIVQWMGW--EPFKIT--YTSDYFQELYELAVELIRRGHAYVDH 370 (628)
Q Consensus 326 ~~~I~~~L~wLGl--~pd~~~--~qSd~~~~~~e~a~~Li~~G~AY~C~ 370 (628)
++...+++..||+ +|+.+| ..-++.+.......++.++|+.|.-+
T Consensus 137 v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~ 185 (933)
T COG0060 137 VDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGY 185 (933)
T ss_pred HHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCC
Confidence 6777889999998 455554 44445555556678999999999643
No 150
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=81.22 E-value=3.5 Score=48.07 Aligned_cols=74 Identities=15% Similarity=0.011 Sum_probs=42.6
Q ss_pred cceeecCccccccchhHHHHH--HHhCCCCC--ceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHc
Q 006869 467 ITHSLCTLEFETRRASYFWLL--HALGLYQP--YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (628)
Q Consensus 467 IThvirG~e~~~~~~~q~~L~--~aLg~~~P--~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~ 541 (628)
++-.+-|.|++.. --+..|. -++--..| ....+|+ ++.+|+||||++|+. .+...+.++
T Consensus 515 ~D~~~~G~D~~~~-W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNv---------------i~p~~ii~~ 578 (601)
T PF00133_consen 515 VDLYIEGKDQIRG-WFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNV---------------IDPEDIIEK 578 (601)
T ss_dssp BSEEEEEGGGTTT-HHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB-----------------BHHHHHHH
T ss_pred cccccCCccchhh-HHHHhHhhccccccCCchheeeecccccccceeecccCCCcc---------------cCHHHHHHH
Confidence 4444556555422 2222222 24433333 3445676 578999999999983 677888887
Q ss_pred CCCHHHHHHHHHHcCC
Q 006869 542 GVTSTSINAFVQGIGI 557 (628)
Q Consensus 542 G~~peaI~~fl~~lG~ 557 (628)
|.++++|-+++..+-
T Consensus 579 -yGaD~lRl~~~~~~~ 593 (601)
T PF00133_consen 579 -YGADALRLWLASSAD 593 (601)
T ss_dssp -T-HHHHHHHHHHHS-
T ss_pred -hCcHHHHHHHHhcCC
Confidence 999999999985443
No 151
>PLN02381 valyl-tRNA synthetase
Probab=80.12 E-value=3.3 Score=51.54 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhc
Q 006869 543 VTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (628)
Q Consensus 543 ~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~ 578 (628)
|.++|+|.+++..+....+...++..++ ..|.|++
T Consensus 710 yGADalR~~l~~~~~~~~di~~~~~~v~-~~r~f~n 744 (1066)
T PLN02381 710 CGTDALRFALVSYTAQSDKINLDILRVV-GYRQWCN 744 (1066)
T ss_pred cChHHHHHHHHcCCccccccCccHHHHH-HHHHHHH
Confidence 6799999999987765554455555554 3344433
No 152
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.95 E-value=1.3 Score=53.07 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=31.6
Q ss_pred CCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCC
Q 006869 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 559 (628)
Q Consensus 506 ~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~ 559 (628)
+|.||||++++. .++..+.++ |.++++|-|++..|=..
T Consensus 576 ~g~KMSKSKgN~---------------v~p~~~i~~-yGADt~Rl~~m~~ap~~ 613 (814)
T COG0495 576 EGEKMSKSKGNV---------------VDPEEAVEK-YGADTVRLYIMFAAPPE 613 (814)
T ss_pred CCCccccccCCC---------------CCHHHHHHH-hCchHHHHHHHhhCChh
Confidence 799999999983 678888887 99999999999866443
No 153
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=76.71 E-value=5.1 Score=48.49 Aligned_cols=54 Identities=17% Similarity=0.044 Sum_probs=37.3
Q ss_pred eeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 498 WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 498 ~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
.++|++ ||||++|+. .+..++.++ |.++++|.|++..|-...+...+...++++
T Consensus 564 ~~~G~v-----KMSKS~GN~---------------i~p~~~i~~-ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~ 617 (805)
T PRK00390 564 LTQGMV-----KMSKSKGNV---------------VDPDDIIEK-YGADTARLFEMFAGPPEKDLEWSDSGVEGA 617 (805)
T ss_pred eecCcE-----EeCCCCCCC---------------CCHHHHHHH-cChHHHHHHHHhcCCccCCcccCHHHHHHH
Confidence 445666 999999983 577777776 999999999988643333333444445444
No 154
>PLN02563 aminoacyl-tRNA ligase
Probab=73.74 E-value=3.6 Score=50.66 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=37.0
Q ss_pred CCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhc
Q 006869 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELN 578 (628)
Q Consensus 506 ~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~ 578 (628)
++.||||++|+. .....+.++ |.++++|.|++..+....+...+...++. ++.|+.
T Consensus 720 ~~eKMSKSKGNv---------------VdP~eiI~k-YGADaLRl~ll~~ap~~dd~~w~~~~V~g-~~rfL~ 775 (963)
T PLN02563 720 RAHKMSKSRGNV---------------VNPDDVVSE-YGADSLRLYEMFMGPLRDSKTWSTSGVEG-VHRFLG 775 (963)
T ss_pred cccccccccCCc---------------CCHHHHHHH-cCcHHHHHHHHhCCCcccccccCHHHHHH-HHHHHH
Confidence 345999999984 445566666 99999999999877554443344444444 334443
No 155
>KOG2438 consensus Glutamyl-tRNA amidotransferase subunit B [Translation, ribosomal structure and biogenesis]
Probab=73.17 E-value=1.1e+02 Score=34.40 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=94.2
Q ss_pred HHHhcCCCchhHHHHhhCHHHHHHHHHHH--HHcccCCCCchhHHHHHHHH-HhhCC-----CCC----CCchhHHHHHH
Q 006869 15 LFLKIGLDDRTAKNTIANNKVTANLTAVI--HEAAVTDGCERRIGNLLYTV-ATKYP-----TNA----LVHRPTLLLYI 82 (628)
Q Consensus 15 ~f~~iGL~e~kaket~kN~kl~~~L~~ii--~~a~~~~~~dk~~g~LLy~l-atk~~-----~~~----~~~r~~l~~~I 82 (628)
|-+..||+-+.|.-++-++.+..-+++.+ .+..... .++...+-+... ...++ ++. ......|+..+
T Consensus 327 L~e~~gl~~k~a~~L~~~~~~~~~~~d~v~i~k~~ae~-~~k~~~~Wi~~~~~g~lrq~~ls~~~~~~~p~~la~ll~ll 405 (505)
T KOG2438|consen 327 LVEQYGLSAKDAVTLANEVELLEFYKDSVRIIKYKAET-TPKLITYWIKEEFLGYLRQIALSPNQSIVTPRQLADLLKLL 405 (505)
T ss_pred HHHhhccchhhhhhhhcchhHHHHHhhhhhhhhhcccc-cccchHHHHHHHHHHHHhhccCCccccccChHHHHHHHHHh
Confidence 46779999999999999988877664332 2222111 223222221111 11111 110 12356677777
Q ss_pred hhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHh--hccccchhhhHHHHH
Q 006869 83 VSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFAHVR 160 (628)
Q Consensus 83 ~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~--~ry~~n~g~ll~~vr 160 (628)
-++.|....-.+ -+..+.+++ +..+...+-++--.+-.=.|++|++.|.++|++|-..+.+ .|-...++.+.|.+.
T Consensus 406 ~~~~Is~~~ak~-ll~~l~~~~-~~~~~s~LIeek~l~~I~dp~eIe~lv~~vm~~h~k~ve~~rsGk~k~~~~l~G~vm 483 (505)
T KOG2438|consen 406 SEETISALSAKQ-LLRHLLKNP-GVMTVSILIEEKRLWQIRDPAEIEELVRSVMEKHPKQVEQLRSGKTKSIKRLIGLVM 483 (505)
T ss_pred hhhhhhHHHHHH-HHHHHHhCC-CcCCHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 778776532222 222233333 2224444444433344449999999999999998876654 333344677788776
Q ss_pred hh-CCCCChhhhHHHHHHHH
Q 006869 161 KR-LPWADPKIVKQLIDARM 179 (628)
Q Consensus 161 ~~-LkWAd~~~vK~~vd~~~ 179 (628)
+. -.-|++++++.++.+.+
T Consensus 484 k~s~g~a~p~~le~~l~~~L 503 (505)
T KOG2438|consen 484 KSSQGRANPKDLEKILEELL 503 (505)
T ss_pred HHhhcCCCHHHHHHHHHHHh
Confidence 54 78899999988887653
No 156
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=72.56 E-value=5.9 Score=48.16 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHH
Q 006869 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (628)
Q Consensus 509 KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~ 571 (628)
|||||+|+. .++..+.++ |.++++|.|++..+-...+-..+...++.
T Consensus 604 KMSKS~GN~---------------v~p~~ii~~-ygaDalRl~~l~~~~~~~d~~~~~~~l~~ 650 (842)
T TIGR00396 604 KMSKSKGNG---------------IDPQEIVKK-HGADALRLYIMFMGPIAASLEWNDSGLEG 650 (842)
T ss_pred hhhhcCCCc---------------CCHHHHHHH-cCchHHHHHHHhcCCcCCCCccCHHHHHH
Confidence 999999983 677888877 99999999998664333333444445543
No 157
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.71 E-value=9.5 Score=45.19 Aligned_cols=70 Identities=24% Similarity=0.403 Sum_probs=43.1
Q ss_pred hcCCeeEEEeC-CCCCCcCchhHHHHHH---HHHHHHHHcCCEEEE--eeecCCcccccHHHHHHHHHHHHHcCCCCC
Q 006869 270 VTGGNVLTRFP-PEPNGYLHIGHAKAMF---VDFGLAKERGGYCYL--RYDDTNPEAEKKEYIDHIEEIVQWMGWEPF 341 (628)
Q Consensus 270 ~~~~~v~tRFa-PsPtG~LHIGharaal---~n~l~Ar~~~G~~iL--RidDtD~~r~~~~~~~~I~~~L~wLGl~pd 341 (628)
.++.+..+-|| |--||.||+||+.++- |.-.|-|-+|-.+++ -|-.|- --.....+...+.++-+|-.||
T Consensus 41 ~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG--MPI~A~AdKLkrEie~fG~ppd 116 (1080)
T KOG0437|consen 41 KSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG--MPIKASADKLKREIELFGCPPD 116 (1080)
T ss_pred cccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC--CccHHhHHHHHHHHHHhCCCCC
Confidence 34455666674 7788999999999864 333444444433332 344443 2233445667777888898876
No 158
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.46 E-value=3.7 Score=50.03 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=37.4
Q ss_pred eee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 500 YSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 500 ~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
||. |+.+|.|||||.||. ..-..+.++ |.++++|-|+++.-++. +..++...+++.
T Consensus 592 HGfvlDe~GrKMSKSlGN~---------------v~P~~V~~~-yGADiLRLwv~ssd~~~-dl~~s~~il~~~ 648 (933)
T COG0060 592 HGFVLDEKGRKMSKSLGNV---------------VDPQDVIDK-YGADILRLWVASSDYWE-DLRFSDEILKQV 648 (933)
T ss_pred cccEECCCCCCccccCCCc---------------CCHHHHHHh-hCchheeeeeeecCchh-ccccCHHHHHHH
Confidence 565 789999999999984 344555555 77889999988766433 222443344444
No 159
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.96 E-value=16 Score=43.33 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=63.3
Q ss_pred cHHHHHHhhhhcCC-eeEEEeCCCCCCcCchhHHHHHHHHH-----HHHHHcCCEEEEeeecCC-c-----------cc-
Q 006869 260 TKEVLDKHLEVTGG-NVLTRFPPEPNGYLHIGHAKAMFVDF-----GLAKERGGYCYLRYDDTN-P-----------EA- 320 (628)
Q Consensus 260 ~~~~~~~h~~~~~~-~v~tRFaPsPtG~LHIGharaal~n~-----l~Ar~~~G~~iLRidDtD-~-----------~r- 320 (628)
.++.+.+.|...++ .++.- +-+|.|||||++.-++-+ ..|.+.+..|+.=+|.-- | +.
T Consensus 45 ~~~~~~~qls~~q~~~f~L~---danG~lhlghalnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~ 121 (937)
T KOG0433|consen 45 PPEILSSQLSDQQRVEFELK---DANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE 121 (937)
T ss_pred ChHHHHHHHhhccCceEEEe---ccCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhcc
Confidence 36677777776653 33333 389999999999887644 344444444444333221 0 00
Q ss_pred --------------ccHHHHHHHHHHHHHcCCC--CCCc--cCCcccHHHHHHHHHHHHHcCCccccC
Q 006869 321 --------------EKKEYIDHIEEIVQWMGWE--PFKI--TYTSDYFQELYELAVELIRRGHAYVDH 370 (628)
Q Consensus 321 --------------~~~~~~~~I~~~L~wLGl~--pd~~--~~qSd~~~~~~e~a~~Li~~G~AY~C~ 370 (628)
...+++....+.++..|+. |..+ +.+.+|-..-.+...+|.++|..|+.+
T Consensus 122 ~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~ 189 (937)
T KOG0433|consen 122 GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSF 189 (937)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhccceeccC
Confidence 1234556667788888985 4343 445554333334445788999988765
No 160
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=56.86 E-value=7.3 Score=34.49 Aligned_cols=46 Identities=41% Similarity=0.660 Sum_probs=33.8
Q ss_pred eeecCccccccchhHHHHHHHhCC-CCCceeeeeeecCCCccccccc
Q 006869 469 HSLCTLEFETRRASYFWLLHALGL-YQPYVWEYSRLNVSNTVMSKRK 514 (628)
Q Consensus 469 hvirG~e~~~~~~~q~~L~~aLg~-~~P~~~~~~~Ln~~g~KLSKR~ 514 (628)
|++||.++..+...+.|-.....+ ..|..+.++..+.++..||||+
T Consensus 59 ~~~~G~~~~~~~~~e~~~~~n~~l~~~~e~v~~~~~~~~~~~iSSs~ 105 (105)
T cd02156 59 ISVCGEDFQQNRELYRWVKDNITLPVDPEQVELPRLNLETTVMSKRK 105 (105)
T ss_pred HHHHHhhhhhchhHHHHHHHhcCCCCCCeEEEccccccCceeeccCC
Confidence 889999999887777762222223 3577777787778899999985
No 161
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=51.35 E-value=1.4 Score=47.21 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=30.7
Q ss_pred cCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCC
Q 006869 524 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (628)
Q Consensus 524 v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~ 560 (628)
+++|++|+..++..|+++|++|++++.|+...|++..
T Consensus 258 ~r~~g~~~~~~l~~L~~lG~~~~~~~e~~~~~~~~~~ 294 (314)
T PF00749_consen 258 YREWGDPPEATLNYLARLGWSPEAIREFFSLDELIKQ 294 (314)
T ss_dssp HHHTT-THHHHHHHHHHTTB-HCTHHCHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhcCCcchhhhhcCHHHHHHH
Confidence 4679999999999999999999999999988777644
No 162
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.09 E-value=3.6 Score=48.50 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=48.5
Q ss_pred cceeecCccccccchhHHHHHHHhCCCCCceee-----eeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHc
Q 006869 467 ITHSLCTLEFETRRASYFWLLHALGLYQPYVWE-----YSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRR 541 (628)
Q Consensus 467 IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~-----~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~ 541 (628)
|+..+-|.|++.|--. ..|+++..+..-.+|- -|||-+++.||||+.|+ +.||..-.+.
T Consensus 664 iDlrvsGKDLi~NHLt-fflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGN---------------fmTL~qaieK 727 (1080)
T KOG0437|consen 664 IDLRVSGKDLIPNHLT-FFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGN---------------FMTLEQAIEK 727 (1080)
T ss_pred eeeeecccccccccee-EeeeehhhhcccccCccceeeCceEEecchhhccccCC---------------eeeHHHHHHH
Confidence 3344556666644322 2334443333333343 25788899999999998 4788776665
Q ss_pred CCCHHHHHHHHHHcCCCCCCc
Q 006869 542 GVTSTSINAFVQGIGISRSDS 562 (628)
Q Consensus 542 G~~peaI~~fl~~lG~t~~~~ 562 (628)
|...+.|--|+-.|=+-.+.
T Consensus 728 -Fgad~tRlalAdaGD~veDA 747 (1080)
T KOG0437|consen 728 -FGADGTRLALADAGDGVEDA 747 (1080)
T ss_pred -hCccceeeeeecccCCcccc
Confidence 77777777677666655444
No 163
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=42.64 E-value=41 Score=30.40 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=30.8
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhh
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~ 139 (628)
+..+.++.|++|+...- .. -|+.+|++||+.+|++.+.+-
T Consensus 65 ~G~~K~~~A~~~v~~~L----------~~--~gi~~t~~~i~~~IEaAV~~m 104 (108)
T PF09682_consen 65 KGEEKKAEAVQYVKERL----------KK--KGIKVTDEQIEGAIEAAVKEM 104 (108)
T ss_pred CcHHHHHHHHHHHHHHH----------HH--cCCCCCHHHHHHHHHHHHHHH
Confidence 67888898998876531 11 266999999999999998763
No 164
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.00 E-value=52 Score=39.97 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCEEEEeeecCCccc---------ccHHHHHHHHHHHHHcCCC
Q 006869 297 VDFGLAKERGGYCYLRYDDTNPEA---------EKKEYIDHIEEIVQWMGWE 339 (628)
Q Consensus 297 ~n~l~Ar~~~G~~iLRidDtD~~r---------~~~~~~~~I~~~L~wLGl~ 339 (628)
..|..+++||=.|+=-|+|.---. .+=++-+.|.+.|+-+|+-
T Consensus 337 nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~ 388 (995)
T KOG0432|consen 337 NDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLY 388 (995)
T ss_pred hHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhh
Confidence 468889999988877776652111 1113446788888888873
No 165
>PLN02207 UDP-glycosyltransferase
Probab=41.49 E-value=42 Score=38.13 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=46.9
Q ss_pred HHHHcCCCc------------eeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCChhhhHHHHHHHHH
Q 006869 113 FEEACGVGV------------EVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQLIDARMY 180 (628)
Q Consensus 113 Fe~~cGVGv------------~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWAd~~~vK~~vd~~~~ 180 (628)
..+.-|||| .|+.|+|.++|++++.+ + .++|+-|...+-..+|+. .++|-.=...++..+.
T Consensus 389 ~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~----~~~~r~~a~~l~~~a~~A--~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 389 MVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-D----NNVVRKRVMDISQMIQRA--TKNGGSSFAAIEKFIH 461 (468)
T ss_pred HHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-c----hHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHHH
Confidence 355578887 46999999999999962 1 245666677777777654 3344444456777777
Q ss_pred HhcCCCc
Q 006869 181 ELLGERT 187 (628)
Q Consensus 181 ~llgpk~ 187 (628)
++.|-||
T Consensus 462 ~~~~~~~ 468 (468)
T PLN02207 462 DVIGIKT 468 (468)
T ss_pred HHHhccC
Confidence 7777665
No 166
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=3.1e+02 Score=26.52 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=61.2
Q ss_pred chhHHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchh
Q 006869 74 HRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVG 153 (628)
Q Consensus 74 ~r~~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g 153 (628)
+|+-+..|-..|+-.=-++..+=+.-+...-... +|+++|..+|.+.|++--+.-. -.+|
T Consensus 61 RrdS~~~y~~agR~dLa~kE~~Ei~Ii~~ylP~q---------------Lsd~e~~~~v~~aIae~Gas~~-----~dMG 120 (148)
T COG1610 61 RRDSAEEYEKAGRQDLAAKERAEIAIIEEYLPQQ---------------LSEDELRALVDAAIAEVGASSM-----KDMG 120 (148)
T ss_pred HHHHHHHHHHcCcHHHHHHHHhHHHHHHHhCccc---------------CCHHHHHHHHHHHHHHHHHhhH-----HHHH
Confidence 5777778888887666666666677676653222 8999999999999987555332 2499
Q ss_pred hhHHHHHhh-CCCCChhhhHHHHHHH
Q 006869 154 DLFAHVRKR-LPWADPKIVKQLIDAR 178 (628)
Q Consensus 154 ~ll~~vr~~-LkWAd~~~vK~~vd~~ 178 (628)
++|+.++.. --=||+..+-..|-..
T Consensus 121 kvM~al~~k~~GkaD~~~vs~~VK~~ 146 (148)
T COG1610 121 KVMKALKPKVAGKADGGRVSKLVKEL 146 (148)
T ss_pred HHHHHHhHHhcccCcHHHHHHHHHHH
Confidence 999999976 5568887776666543
No 167
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=35.21 E-value=38 Score=30.85 Aligned_cols=60 Identities=20% Similarity=0.397 Sum_probs=34.0
Q ss_pred HHhhCCCCCHHhHHHHHHHHHhcC---CCCC-CHHH---------------HHHHcCCCceeCHHHHHHHHHHHHHhhH
Q 006869 81 YIVSSKIKTPAQLEAAFSFFASTG---SENF-EVDE---------------FEEACGVGVEVSSEDIELTVNEVFEENK 140 (628)
Q Consensus 81 ~I~~gklks~~Ql~aA~~yl~~~~---~~~i-d~~~---------------Fe~~cGVGv~vT~E~I~~~V~~~i~~~k 140 (628)
+|++|.+-|...|+..+..+.... .... +... ..++-=.||.||++||.++|+.+...|.
T Consensus 6 AvVn~eiIt~sel~~~~~~~~~~~~~~~~~~~~~~~l~~qvLd~LI~e~L~~q~ak~~gI~vsd~evd~~i~~ia~~n~ 84 (118)
T PF09312_consen 6 AVVNDEIITQSELEQRLAQLKAQIQQQGQQIPPRNQLRKQVLDQLIDEKLQLQEAKRLGIKVSDEEVDEAIANIAKQNN 84 (118)
T ss_dssp EEESSSEEEHHHHHHHHHHHHHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHTT
T ss_pred EEECCcCcCHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 466777777777777777765221 0111 1111 2333447899999999999999887654
No 168
>PTZ00183 centrin; Provisional
Probab=33.99 E-value=3.4e+02 Score=24.74 Aligned_cols=47 Identities=13% Similarity=0.363 Sum_probs=35.9
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC-CceeCHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGV-GVEVSSEDIELTVNEV 135 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV-Gv~vT~E~I~~~V~~~ 135 (628)
+..++..+++.+..+..+.++..+|...|-- |..++.+++...+..+
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEA 135 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4577889999887665667999999888742 5668999988877654
No 169
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=30.75 E-value=1.7e+02 Score=30.01 Aligned_cols=28 Identities=36% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCCCChhHHHHHHHhcCCCchhHHHHhh
Q 006869 4 VSKGDKSEILELFLKIGLDDRTAKNTIA 31 (628)
Q Consensus 4 ~~~~~~~~~~~~f~~iGL~e~kaket~k 31 (628)
++.++.+++.++.+++||-..||+.+.+
T Consensus 64 l~~a~~~~l~~~I~~iGlyr~KAk~I~~ 91 (211)
T COG0177 64 LLNADEEELEELIKSIGLYRNKAKNIKE 91 (211)
T ss_pred HHcCCHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4567788899999999999999998753
No 170
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=30.18 E-value=1.5e+02 Score=29.34 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=21.7
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT 316 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt 316 (628)
-+.+||-| +|+||+..+ .+.+.+ -.+.++=+-.-
T Consensus 3 l~~GrF~P-----~H~GHl~~i--~~a~~~--~~~vii~i~s~ 36 (181)
T cd02168 3 VYIGRFQP-----FHNGHLAVV--LIALEK--AKKVIILIGSA 36 (181)
T ss_pred EEeeccCC-----CCHHHHHHH--HHHHHH--CCeEEEEeCCC
Confidence 36789998 899999765 333333 22666655443
No 171
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=30.00 E-value=30 Score=34.21 Aligned_cols=60 Identities=23% Similarity=0.327 Sum_probs=33.3
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCccc------ccHHHHHHHHHHHHHcCCCC
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA------EKKEYIDHIEEIVQWMGWEP 340 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r------~~~~~~~~I~~~L~wLGl~p 340 (628)
.|-+++||-| +|.||+..+ .+.+-+ .+--+|+ |--.+..+ ...+-...|.+.|+-.|++.
T Consensus 5 rgv~~GRFqP-----~H~GHl~vi--~~al~~-vDeliI~-iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~ 70 (172)
T COG1056 5 RGVYFGRFQP-----LHTGHLYVI--KRALSK-VDELIIV-IGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL 70 (172)
T ss_pred EEEEEeccCC-----ccHhHHHHH--HHHHHh-CCEEEEE-EccCcccccccCCCCccchhHHHHHHHHhcCCCc
Confidence 4668999999 999999985 344443 3333332 21111110 11223356666777777764
No 172
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=29.37 E-value=34 Score=34.45 Aligned_cols=39 Identities=26% Similarity=0.538 Sum_probs=25.4
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCccc
Q 006869 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEA 320 (628)
Q Consensus 273 ~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r 320 (628)
|-+++||-| +|.||+..+ .+.+.+.. ..|+=|---+..+
T Consensus 7 ~v~iGRFQP-----fH~GHl~~I--~~al~~~d--evII~IGSA~~s~ 45 (196)
T PRK13793 7 LVFIGRFQP-----FHLAHMQTI--EIALQQSR--YVILALGSAQMER 45 (196)
T ss_pred EEEEecCCC-----CcHHHHHHH--HHHHHhCC--EEEEEEccCCCCC
Confidence 458999999 899999764 44544432 5666555544433
No 173
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.20 E-value=21 Score=42.41 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=41.9
Q ss_pred eeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHH
Q 006869 498 WEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (628)
Q Consensus 498 ~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~i 573 (628)
.-||. ++.+|.||||+-|+. -||+..+=-....--|..+++|.+++....+. +..+.+..|.++-
T Consensus 601 ivHGFtlDE~G~KMSKSlGNV----------idP~~v~~G~~k~payGaD~LR~WVA~~~~t~-d~~iGp~il~qv~ 666 (937)
T KOG0433|consen 601 IVHGFTLDENGNKMSKSLGNV----------VDPTMVTDGSLKQPAYGADGLRFWVAGSENTG-ESKIGPKILDQVD 666 (937)
T ss_pred eeeeeEecCCccchhhcccCc----------CCHHHHhCCcccCCCccccceeeeeecccccC-ceecCHHHHHHHH
Confidence 34665 899999999999985 36766443222222377888998888544443 3346666666553
No 174
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.14 E-value=57 Score=34.95 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=39.2
Q ss_pred CCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccc---------cHHHHHHHHHHHHHcCCCCCC
Q 006869 284 NGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAE---------KKEYIDHIEEIVQWMGWEPFK 342 (628)
Q Consensus 284 tG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~---------~~~~~~~I~~~L~wLGl~pd~ 342 (628)
++-||+||+-.+++.-++-...+...++.++|- ++. ...|...=..++=.+|++|..
T Consensus 96 S~smHlGHliPFiftKwlQe~F~vpLVIqlTDD--EKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 96 SESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDD--EKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred ccccccccchhHHHHHHHHHHhCCceEEEeccc--HHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 478999999999988777788899888777653 321 222333333445577888866
No 175
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=27.68 E-value=46 Score=27.75 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCCCChhHHHHHHHhcCCCchhHHHHhhC
Q 006869 4 VSKGDKSEILELFLKIGLDDRTAKNTIAN 32 (628)
Q Consensus 4 ~~~~~~~~~~~~f~~iGL~e~kaket~kN 32 (628)
++..++...+..++.+|+++++++.+++|
T Consensus 6 ~~~~R~daA~dam~~lG~~~~~v~~vl~~ 34 (65)
T PF10440_consen 6 KGNERIDAALDAMRQLGFSKKQVRPVLKN 34 (65)
T ss_pred cCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45667778889999999999998887765
No 176
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.86 E-value=1.8e+02 Score=31.29 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCChhhh
Q 006869 92 QLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIV 171 (628)
Q Consensus 92 Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWAd~~~v 171 (628)
.|.|.|+++.... ..-+..++++.|- =.|+++..++.-...- ....|+.-.+--|++-||+.+-|.|+..=
T Consensus 205 ~l~a~i~ll~qaa-~~~~~~~l~~~~a----adPdd~~aa~~lA~~~----~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 205 GLQAQIELLEQAA-ATPEIQDLQRRLA----ADPDDVEAALALADQL----HLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHH----hCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 3567788876543 4567788888887 6788888887766554 44577777788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchh
Q 006869 172 KQLIDARMYELLGERTAA 189 (628)
Q Consensus 172 K~~vd~~~~~llgpk~~~ 189 (628)
|.-|+ +++++||.+..
T Consensus 276 k~lle--~f~~~g~~Dp~ 291 (304)
T COG3118 276 KTLLE--LFEAFGPADPL 291 (304)
T ss_pred HHHHH--HHHhcCCCCHH
Confidence 99887 88999998764
No 177
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=25.02 E-value=1.6e+02 Score=25.83 Aligned_cols=62 Identities=21% Similarity=0.157 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhh
Q 006869 77 TLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (628)
Q Consensus 77 ~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~ 139 (628)
-++.-|.+...+|...++.++..+.... .-.+-.++-=.-.-|..-|||.|-+.|.++-++|
T Consensus 17 ~~v~~i~~~~~~~ee~~d~lv~hF~~it-eHP~gSDLIfYP~~~~edsPegIv~~vKeWRa~n 78 (85)
T PF01320_consen 17 EFVKEIFNAELKTEEEHDELVDHFEKIT-EHPDGSDLIFYPEDGREDSPEGIVKEVKEWRASN 78 (85)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHHHHHHH---TTTTHHHHS-STTSTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcC-CCCCCCceeeeCCCCCCCCHHHHHHHHHHHHHHc
Confidence 3578888888999999999998875431 1112222222223377889999999999997764
No 178
>COG3372 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=24.93 E-value=3e+02 Score=30.70 Aligned_cols=107 Identities=15% Similarity=0.290 Sum_probs=77.6
Q ss_pred hhHHHHHHHh-cCCCchhHHHHh-------hCHHHHHHHHHHHHHccc---CCCC-chhHHHHHHHHHhhCCCCCCCchh
Q 006869 9 KSEILELFLK-IGLDDRTAKNTI-------ANNKVTANLTAVIHEAAV---TDGC-ERRIGNLLYTVATKYPTNALVHRP 76 (628)
Q Consensus 9 ~~~~~~~f~~-iGL~e~kaket~-------kN~kl~~~L~~ii~~a~~---~~~~-dk~~g~LLy~latk~~~~~~~~r~ 76 (628)
++++++.|++ +|.+-..-.|.+ +| |+..-|..++..--. .+.. +...-..|++++ +.....+|.
T Consensus 29 A~evI~~Fks~~Gkt~geL~e~l~~le~~~~~-K~VRGlA~iler~c~fe~~s~~dp~~~R~~lFe~g---~~~s~eer~ 104 (396)
T COG3372 29 AEEVIETFKSSLGKTYGELEEDLRDLEYAAKD-KLVRGLAKILERECEFEVVSALDPREVRRFLFERG---PALSEEERQ 104 (396)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh-HHHHHHHHHHHhheeeeecccCChHHHHHHHHhcC---CCCChHHHH
Confidence 3567889986 887754443332 34 788888888864333 2334 567788899998 333356899
Q ss_pred HHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHH
Q 006869 77 TLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIE 129 (628)
Q Consensus 77 ~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~ 129 (628)
.+.+.+++.-=.|.+|+..|+ | ++.+++.+-..|+ .+|||++-
T Consensus 105 ~vl~~aA~~fsvs~eeie~al-y------aDleeek~L~~~p---~itPe~Ll 147 (396)
T COG3372 105 RVLQEAADHFSVSPEEIEDAL-Y------ADLEEEKILVEFP---DITPEWLL 147 (396)
T ss_pred HHHHHHHHHhCCCHHHHHHHH-H------hccchhheeccCC---CCCHHHHH
Confidence 999999999888999999998 2 2467777888888 79999875
No 179
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=24.83 E-value=2.6e+02 Score=25.65 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=36.1
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFE 137 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~ 137 (628)
...-+.+++.||..+...+++.+++-+.+| +|+-.+....++++.
T Consensus 7 ~~~~i~~~~~~I~~~~~~~~sl~~lA~~~g----~S~~~l~r~Fk~~~G 51 (127)
T PRK11511 7 DAITIHSILDWIEDNLESPLSLEKVSERSG----YSKWHLQRMFKKETG 51 (127)
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHHHHHHC----cCHHHHHHHHHHHHC
Confidence 345678999999999878899999999999 667777766666643
No 180
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=62 Score=36.47 Aligned_cols=46 Identities=26% Similarity=0.421 Sum_probs=36.4
Q ss_pred CCeeEEEeC-CCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC
Q 006869 272 GGNVLTRFP-PEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN 317 (628)
Q Consensus 272 ~~~v~tRFa-PsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD 317 (628)
..+|++-|+ |+----||+||+|+-++..-++| .+-|.=+||+.-+-
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvG 235 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVG 235 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeecccc
Confidence 356888885 44447799999999999999999 56788889887663
No 181
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=24.26 E-value=54 Score=31.97 Aligned_cols=20 Identities=30% Similarity=0.364 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCccccCCCH
Q 006869 354 YELAVELIRRGHAYVDHQTP 373 (628)
Q Consensus 354 ~e~a~~Li~~G~AY~C~cs~ 373 (628)
.|.|++|.+.|+.|+|.||.
T Consensus 117 ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 117 LELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred HHHHHHHHhcCcEEEeeccc
Confidence 48999999999999999885
No 182
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=22.27 E-value=1.6e+02 Score=25.52 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhH
Q 006869 78 LLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENK 140 (628)
Q Consensus 78 l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k 140 (628)
|++-+-.-.++++.+|..-|+=+.+. .|.-||+|+..+.|..+++...
T Consensus 18 LA~sv~~adlqdE~~vR~lIk~vs~~---------------an~~Vs~~~ed~IV~~I~~~~~ 65 (79)
T PF14069_consen 18 LANSVQKADLQDEKKVRQLIKQVSQI---------------ANKPVSKEQEDQIVQAIINQKI 65 (79)
T ss_pred HHHhcchhhcccHHHHHHHHHHHHHH---------------hCCCCCHHHHHHHHHHHHhCCC
Confidence 34444444588999999999888775 4788999999999998887643
No 183
>PRK13503 transcriptional activator RhaS; Provisional
Probab=21.35 E-value=5.7e+02 Score=25.93 Aligned_cols=45 Identities=9% Similarity=0.193 Sum_probs=38.1
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFE 137 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~ 137 (628)
+..++..++.||..+...+++.+++-+.+| +|+-.+.+..+++..
T Consensus 169 ~~~~i~~~~~~I~~~~~~~~tl~~lA~~~~----lS~~~l~r~Fk~~~G 213 (278)
T PRK13503 169 SDARLNQLLAWLEDHFAEEVNWEALADQFS----LSLRTLHRQLKQQTG 213 (278)
T ss_pred cHHHHHHHHHHHHHhhcCCCCHHHHHHHHC----CCHHHHHHHHHHHhC
Confidence 467799999999999878999999999999 788887777776643
No 184
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=20.72 E-value=63 Score=31.13 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=16.8
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK 303 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar 303 (628)
-+.+||.| +|.||+..+ .....+
T Consensus 3 l~~G~F~P-----~H~GHl~li--~~a~~~ 25 (158)
T cd02167 3 IVFGKFAP-----LHTGHVYLI--YKALSQ 25 (158)
T ss_pred EEeeccCC-----CCHHHHHHH--HHHHHH
Confidence 36789999 999999864 444444
No 185
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=20.60 E-value=3e+02 Score=24.03 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHh
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEE 138 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~ 138 (628)
.-+..++.|+..+...+++.++.-+.|| +|+-.+....+++...
T Consensus 5 ~~~~~~~~~i~~~~~~~~~~~~lA~~~~----~S~~~l~r~f~~~~g~ 48 (107)
T PRK10219 5 KIIQTLIAWIDEHIDQPLNIDVVAKKSG----YSKWYLQRMFRTVTHQ 48 (107)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHC----CCHHHHHHHHHHHHCc
Confidence 4478889999998878899999999999 7777777777776443
No 186
>COG4720 Predicted membrane protein [Function unknown]
Probab=20.44 E-value=57 Score=32.35 Aligned_cols=31 Identities=39% Similarity=0.776 Sum_probs=24.0
Q ss_pred EEEeC-CCCCCcCchhHHHHHHHHHHHHHHcC
Q 006869 276 LTRFP-PEPNGYLHIGHAKAMFVDFGLAKERG 306 (628)
Q Consensus 276 ~tRFa-PsPtG~LHIGharaal~n~l~Ar~~~ 306 (628)
++|+| |-|+|++|+|.+--++..++|-...|
T Consensus 25 ~i~IPtp~~~~~i~L~da~i~las~lfGs~~G 56 (177)
T COG4720 25 LIRIPTPIPNGFLTLGDAGIALASFLFGSRAG 56 (177)
T ss_pred eeEecCCCCCCeeeHHHHHHHHHHHHHcchHH
Confidence 35553 66669999999999999998865443
No 187
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=20.37 E-value=73 Score=24.37 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=19.3
Q ss_pred hHHHHHHHhcCCCchhHHHHhhCH
Q 006869 10 SEILELFLKIGLDDRTAKNTIANN 33 (628)
Q Consensus 10 ~~~~~~f~~iGL~e~kaket~kN~ 33 (628)
+|.++-+.++|.+++.|..++++-
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~ 27 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 577888999999999998887764
No 188
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=20.32 E-value=1.1e+02 Score=26.59 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHcC----CCceeCHHHHHHHHHH
Q 006869 106 ENFEVDEFEEACG----VGVEVSSEDIELTVNE 134 (628)
Q Consensus 106 ~~id~~~Fe~~cG----VGv~vT~E~I~~~V~~ 134 (628)
+.|+.++|.+.+. .|..+|+++|.+.++.
T Consensus 27 g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~ 59 (88)
T cd05029 27 NTLSKKELKELIQKELTIGSKLQDAEIAKLMED 59 (88)
T ss_pred CEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3455555555552 3555555555555443
Done!