Query 006869
Match_columns 628
No_of_seqs 308 out of 2031
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:07:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aii_A Glutamyl-tRNA synthetas 100.0 1.7E-98 6E-103 832.4 29.7 352 270-628 92-443 (553)
2 1qtq_A GLNRS, protein (glutami 100.0 3.8E-97 1E-101 821.5 32.9 364 261-628 12-382 (553)
3 2hz7_A Glutaminyl-tRNA synthet 100.0 8.3E-95 2.8E-99 832.1 31.6 363 261-628 52-440 (851)
4 4gri_A Glutamate--tRNA ligase; 100.0 3.3E-78 1.1E-82 672.7 20.6 322 264-610 12-363 (512)
5 2ja2_A Glutamyl-tRNA synthetas 100.0 5.5E-76 1.9E-80 649.8 22.4 312 271-611 3-348 (498)
6 2cfo_A Glutamyl-tRNA synthetas 100.0 8.6E-76 2.9E-80 648.8 23.3 308 274-611 1-339 (492)
7 1j09_A Glutamyl-tRNA synthetas 100.0 8.8E-76 3E-80 645.2 21.1 288 274-597 1-314 (468)
8 4g6z_A Glutamate-tRNA ligase; 100.0 8.7E-75 3E-79 637.5 19.7 300 273-611 24-354 (490)
9 3afh_A Glutamyl-tRNA synthetas 100.0 2.4E-72 8.1E-77 620.4 15.5 303 270-610 21-344 (488)
10 3al0_C Glutamyl-tRNA(Gln) amid 100.0 1.7E-69 6E-74 609.6 11.9 301 273-611 128-449 (592)
11 2o5r_A Glutamyl-tRNA synthetas 100.0 4.5E-68 1.5E-72 586.4 20.0 301 275-611 14-353 (481)
12 1nzj_A Hypothetical protein YA 100.0 9.6E-66 3.3E-70 536.7 21.4 268 272-587 3-289 (298)
13 3tl4_X Glutaminyl-tRNA synthet 100.0 2.6E-57 8.8E-62 440.9 20.1 181 9-191 4-186 (187)
14 1irx_A Lysyl-tRNA synthetase; 100.0 5.3E-31 1.8E-35 294.3 4.1 275 274-597 21-351 (523)
15 3tqo_A Cysteinyl-tRNA syntheta 99.9 1.9E-25 6.4E-30 245.1 18.7 252 280-572 32-315 (462)
16 1li5_A Cysrs, cysteinyl-tRNA s 99.9 3.2E-25 1.1E-29 244.1 20.0 249 280-572 29-312 (461)
17 3sp1_A Cysteinyl-tRNA syntheta 99.9 5.9E-23 2E-27 226.7 17.9 255 280-575 49-349 (501)
18 3c8z_A Cysteinyl-tRNA syntheta 99.9 8E-23 2.7E-27 222.2 18.1 258 278-574 44-340 (414)
19 2csx_A Methionyl-tRNA syntheta 99.8 2.8E-20 9.5E-25 206.2 17.5 266 274-574 7-344 (497)
20 2d5b_A Methionyl-tRNA syntheta 99.8 2.8E-18 9.7E-23 190.0 17.7 276 275-574 6-346 (500)
21 1iq0_A Arginyl-tRNA synthetase 99.7 1E-17 3.4E-22 189.8 13.0 296 251-596 75-465 (592)
22 2dlc_X Tyrosyl-tRNA synthetase 99.7 4.9E-17 1.7E-21 175.6 13.3 194 261-519 26-237 (394)
23 4dlp_A Aminoacyl-tRNA syntheta 99.6 1.9E-14 6.5E-19 161.0 20.6 95 275-369 28-142 (536)
24 3h99_A Methionyl-tRNA syntheta 99.6 4.8E-14 1.6E-18 158.5 22.7 279 275-571 21-392 (560)
25 3fnr_A Arginyl-tRNA synthetase 99.6 2.6E-14 8.7E-19 157.3 16.2 243 272-556 29-316 (464)
26 2x1l_A Methionyl-tRNA syntheta 99.6 3.3E-14 1.1E-18 158.4 16.1 274 275-574 15-359 (524)
27 1n3l_A Tyrosyl-tRNA synthetase 99.5 3.6E-13 1.2E-17 144.5 16.1 195 260-519 23-232 (372)
28 2cyb_A Tyrosyl-tRNA synthetase 99.5 9.6E-14 3.3E-18 146.2 10.9 191 261-516 20-221 (323)
29 1f7u_A Arginyl-tRNA synthetase 99.5 2.4E-13 8.1E-18 154.2 13.6 247 272-597 142-482 (607)
30 2zue_A Arginyl-tRNA synthetase 99.4 6E-13 2E-17 151.6 12.5 98 272-369 118-295 (629)
31 3kfl_A Methionyl-tRNA syntheta 99.4 8.1E-12 2.8E-16 140.7 18.0 96 274-369 28-143 (564)
32 3u1f_A Methionyl-tRNA syntheta 99.2 9.7E-11 3.3E-15 130.8 17.8 94 275-368 12-125 (542)
33 1rqg_A Methionyl-tRNA syntheta 99.2 8.6E-11 2.9E-15 135.9 13.4 94 275-368 5-119 (722)
34 2cya_A Tyrosyl-tRNA synthetase 98.8 2.7E-08 9.3E-13 106.3 15.3 193 260-515 22-244 (364)
35 2g36_A Tryptophanyl-tRNA synth 98.7 5.6E-08 1.9E-12 103.0 12.6 180 274-516 14-212 (340)
36 2zp1_A Tyrosyl-tRNA synthetase 98.7 5.1E-08 1.7E-12 102.2 9.7 186 261-516 17-211 (314)
37 2yy5_A Tryptophanyl-tRNA synth 98.6 6.9E-08 2.4E-12 102.6 7.8 183 275-517 7-210 (348)
38 1i6k_A TRPRS, tryptophanyl-tRN 98.5 2.6E-07 8.8E-12 97.5 10.4 177 275-517 4-200 (328)
39 1yi8_B Tryptophanyl-tRNA synth 98.5 1.6E-07 5.5E-12 99.9 7.1 182 273-516 23-222 (351)
40 2el7_A Tryptophanyl-tRNA synth 98.4 1.1E-06 3.7E-11 93.1 12.9 172 282-516 9-202 (337)
41 4arc_A Leucine--tRNA ligase; l 98.0 1E-05 3.4E-10 95.4 8.5 94 275-368 56-171 (880)
42 2v0c_A Aminoacyl-tRNA syntheta 97.9 1.5E-05 5.2E-10 94.0 9.6 94 275-368 36-151 (878)
43 1wkb_A Leucyl-tRNA synthetase; 97.9 2.6E-05 8.7E-10 91.4 9.5 94 275-368 37-178 (810)
44 3jxe_A Tryptophanyl-tRNA synth 97.8 0.0002 6.9E-09 77.1 14.8 174 274-519 75-263 (392)
45 3tzl_A Tryptophanyl-tRNA synth 97.7 5E-05 1.7E-09 79.8 8.1 171 282-516 11-199 (322)
46 1h3f_A Tyrosyl-tRNA synthetase 97.7 0.00016 5.6E-09 78.8 11.7 192 261-516 25-239 (432)
47 3hzr_A Tryptophanyl-tRNA synth 97.7 0.00013 4.4E-09 78.4 10.7 85 272-358 80-175 (386)
48 3hv0_A Tryptophanyl-tRNA synth 97.5 0.0003 1E-08 75.7 10.6 91 262-355 63-166 (393)
49 1ile_A Ilers, isoleucyl-tRNA s 97.5 3.4E-05 1.2E-09 90.5 3.4 92 277-368 43-173 (821)
50 2jan_A Tyrosyl-tRNA synthetase 97.5 0.0013 4.6E-08 71.5 15.6 221 261-555 21-272 (432)
51 3a04_A Tryptophanyl-tRNA synth 97.5 0.0007 2.4E-08 72.5 12.4 116 247-378 51-176 (372)
52 1gax_A Valrs, valyl-tRNA synth 97.4 0.0002 6.8E-09 84.4 8.5 94 275-368 37-168 (862)
53 2cyc_A Tyrosyl-tRNA synthetase 97.4 0.0014 4.9E-08 70.1 14.1 90 261-352 21-127 (375)
54 1ffy_A Isoleucyl-tRNA syntheta 97.4 0.00015 5E-09 86.1 6.7 94 275-368 51-178 (917)
55 1wz2_A Leucyl-tRNA synthetase; 97.3 0.00017 5.7E-09 86.1 6.0 94 275-368 37-178 (967)
56 3i05_A Tryptophanyl-tRNA synth 97.3 0.00034 1.2E-08 75.4 7.7 69 281-350 85-164 (395)
57 2ip1_A Tryptophanyl-tRNA synth 97.3 0.0013 4.4E-08 71.8 11.6 95 261-358 90-198 (432)
58 3tze_A Tryptophanyl-tRNA synth 97.3 0.00091 3.1E-08 72.3 10.4 69 282-351 109-188 (406)
59 2j5b_A Tyrosyl-tRNA synthetase 97.2 0.0017 5.8E-08 68.9 11.8 88 261-350 28-127 (348)
60 3foc_A Tryptophanyl-tRNA synth 97.2 0.00082 2.8E-08 73.5 8.9 109 262-379 80-202 (451)
61 3vgj_A Tyrosyl-tRNA synthetase 97.1 0.0041 1.4E-07 66.5 13.7 194 261-516 44-254 (373)
62 3prh_A Tryptophanyl-tRNA synth 97.1 0.0011 3.9E-08 71.1 9.3 86 282-377 43-137 (388)
63 3p0j_A Tyrosyl-tRNA synthetase 97.0 0.0061 2.1E-07 70.1 14.8 191 260-516 27-237 (690)
64 1jil_A Tyrrs, tyrosyl-tRNA syn 97.0 0.028 9.7E-07 60.9 19.1 218 261-555 21-271 (420)
65 2ts1_A Tyrosyl-tRNA synthetase 96.9 0.0088 3E-07 64.9 14.0 82 466-556 185-271 (419)
66 2pid_A Tyrosyl-tRNA synthetase 96.7 0.01 3.6E-07 63.0 12.3 112 451-577 191-310 (356)
67 2yxn_A Tyrosyl-tRNA synthetase 96.7 0.031 1.1E-06 58.5 15.7 86 261-349 22-129 (322)
68 1r6t_A Tryptophanyl-tRNA synth 96.7 0.0035 1.2E-07 69.1 8.7 69 282-351 163-242 (477)
69 3al0_B Aspartyl/glutamyl-tRNA( 96.6 0.022 7.6E-07 62.6 14.2 159 11-178 305-478 (482)
70 3ip4_B Aspartyl/glutamyl-tRNA( 96.5 0.038 1.3E-06 60.8 15.8 166 11-184 298-477 (483)
71 1r6u_A Tryptophanyl-tRNA synth 96.4 0.0078 2.7E-07 65.6 9.3 69 282-351 116-195 (437)
72 1y42_X Tyrosyl-tRNA synthetase 96.3 0.024 8.3E-07 61.0 12.4 52 261-315 53-105 (392)
73 1ile_A Ilers, isoleucyl-tRNA s 95.7 0.012 4.2E-07 68.9 7.3 67 496-578 577-644 (821)
74 3h0l_B Aspartyl/glutamyl-tRNA( 95.1 0.053 1.8E-06 59.6 9.2 161 11-179 301-475 (478)
75 1zq1_C Glutamyl-tRNA(Gln) amid 94.9 0.017 5.9E-07 65.3 4.6 162 11-182 461-630 (633)
76 1wz2_A Leucyl-tRNA synthetase; 94.1 0.065 2.2E-06 63.9 7.3 62 495-572 635-697 (967)
77 3sz3_A Tryptophanyl-tRNA synth 93.6 0.066 2.2E-06 56.5 5.6 92 274-377 8-108 (341)
78 1wkb_A Leucyl-tRNA synthetase; 93.5 0.078 2.7E-06 61.9 6.4 63 494-572 634-697 (810)
79 1gax_A Valrs, valyl-tRNA synth 93.2 0.092 3.1E-06 61.9 6.5 61 496-572 514-575 (862)
80 2d6f_C Glutamyl-tRNA(Gln) amid 93.2 0.018 6.2E-07 65.0 0.5 159 10-179 448-615 (619)
81 3n9i_A Tryptophanyl-tRNA synth 93.1 0.07 2.4E-06 56.4 4.9 91 275-377 18-117 (346)
82 1ffy_A Isoleucyl-tRNA syntheta 92.2 0.16 5.5E-06 60.3 6.8 59 496-571 581-640 (917)
83 1ng6_A Hypothetical protein YQ 91.9 0.61 2.1E-05 43.3 8.9 61 112-178 85-146 (148)
84 2hz7_A Glutaminyl-tRNA synthet 90.2 0.054 1.9E-06 63.3 0.0 154 16-178 688-849 (851)
85 4arc_A Leucine--tRNA ligase; l 88.9 0.42 1.4E-05 56.4 6.1 47 509-571 639-685 (880)
86 3p0j_A Tyrosyl-tRNA synthetase 87.3 1.1 3.9E-05 51.4 8.2 73 278-351 386-470 (690)
87 2v0c_A Aminoacyl-tRNA syntheta 82.3 1.3 4.4E-05 52.3 5.9 49 508-572 636-684 (878)
88 2lhi_A Calmodulin, serine/thre 61.5 29 0.00098 31.8 8.6 47 89-135 82-129 (176)
89 1h8b_A ACT-EF34, alpha-actinin 61.0 14 0.00048 30.0 5.5 43 86-135 5-47 (75)
90 2ehb_A Calcineurin B-like prot 60.9 54 0.0018 30.0 10.5 50 89-138 109-163 (207)
91 3ox6_A Calcium-binding protein 56.5 76 0.0026 26.8 10.1 46 90-135 87-134 (153)
92 2zfd_A Calcineurin B-like prot 51.8 1.1E+02 0.0037 28.7 11.1 50 89-138 120-174 (226)
93 2lmt_A Calmodulin-related prot 51.5 46 0.0016 29.0 7.9 49 87-135 79-128 (148)
94 2d8n_A Recoverin; structural g 51.1 82 0.0028 28.7 9.9 112 6-118 15-134 (207)
95 3pm8_A PFCDPK2, calcium-depend 50.9 13 0.00045 34.6 4.3 62 74-135 112-176 (197)
96 2p12_A Hypothetical protein DU 48.8 24 0.00083 33.6 5.7 53 108-167 120-175 (176)
97 4dvc_A Thiol:disulfide interch 48.5 30 0.001 31.1 6.3 42 6-47 103-144 (184)
98 2lv7_A Calcium-binding protein 48.1 9.3 0.00032 32.3 2.5 45 91-135 36-81 (100)
99 3khe_A Calmodulin-like domain 47.9 25 0.00085 31.6 5.6 50 85-135 117-166 (191)
100 2l2e_A Calcium-binding protein 47.3 1.5E+02 0.0052 26.3 12.2 113 5-118 6-126 (190)
101 1s1e_A KV channel interacting 46.9 69 0.0024 30.3 8.8 108 9-117 36-151 (224)
102 3i5g_C Myosin catalytic light 45.6 24 0.00083 31.8 5.1 49 87-135 81-130 (159)
103 2kz2_A Calmodulin, CAM; TR2C, 45.2 42 0.0014 27.3 6.1 61 73-135 13-74 (94)
104 2bl0_C Myosin regulatory light 44.6 95 0.0032 26.1 8.7 48 88-135 76-124 (142)
105 1fpw_A Yeast frequenin, calciu 43.4 91 0.0031 27.8 8.7 111 4-118 5-126 (190)
106 1s6c_A KV4 potassium channel-i 42.8 1.6E+02 0.0053 26.0 10.2 30 88-117 89-118 (183)
107 3mse_B Calcium-dependent prote 42.6 1.1E+02 0.0038 27.3 9.2 46 90-136 107-152 (180)
108 1g8i_A Frequenin, neuronal cal 41.7 1.1E+02 0.0038 27.1 9.1 113 4-117 5-125 (190)
109 1wdc_B Scallop myosin; calcium 40.1 94 0.0032 26.7 8.0 49 87-135 83-132 (156)
110 1exr_A Calmodulin; high resolu 39.5 85 0.0029 26.9 7.6 47 89-135 81-128 (148)
111 2pvb_A Protein (parvalbumin); 38.1 43 0.0015 27.3 5.1 48 88-135 38-89 (108)
112 3u43_A Colicin-E2 immunity pro 37.1 70 0.0024 27.3 6.2 61 77-139 17-78 (94)
113 3fs7_A Parvalbumin, thymic; ca 36.8 1.4E+02 0.0047 24.1 8.2 48 88-135 39-90 (109)
114 4ds7_A Calmodulin, CAM; protei 36.3 90 0.0031 26.2 7.1 46 90-135 83-129 (147)
115 1pva_A Parvalbumin; calcium bi 35.7 49 0.0017 27.0 5.1 48 88-135 39-90 (110)
116 3fwb_A Cell division control p 35.3 1E+02 0.0035 26.4 7.4 47 89-135 94-141 (161)
117 2jul_A Calsenilin; EF-hand, ca 35.2 1.9E+02 0.0063 27.7 10.0 30 88-117 162-191 (256)
118 2ct9_A Calcium-binding protein 33.6 37 0.0013 31.4 4.4 50 89-138 111-162 (208)
119 2ot3_A RAB5 GDP/GTP exchange f 33.6 72 0.0025 32.1 6.8 74 50-124 187-268 (274)
120 3j04_B Myosin regulatory light 33.4 64 0.0022 27.2 5.7 48 88-135 73-121 (143)
121 1k2h_A S100A1, S-100 protein, 33.1 40 0.0014 26.7 4.0 45 91-135 9-61 (93)
122 3i5g_B Myosin regulatory light 32.7 28 0.00097 31.1 3.3 47 88-134 82-129 (153)
123 3cuq_A Vacuolar-sorting protei 32.7 1.6E+02 0.0055 29.1 9.0 59 9-68 12-81 (234)
124 2mys_C Myosin; muscle protein, 31.4 2.3E+02 0.0077 23.6 9.3 47 88-134 82-129 (149)
125 2jnf_A Troponin C; stretch act 30.2 1.4E+02 0.0047 25.6 7.4 47 89-135 89-136 (158)
126 2qac_A Myosin A tail domain in 30.2 1.1E+02 0.0038 25.9 6.7 47 89-135 82-129 (146)
127 2k9s_A Arabinose operon regula 29.9 1.1E+02 0.0037 25.4 6.4 42 91-136 3-45 (107)
128 1tiz_A Calmodulin-related prot 29.9 40 0.0014 24.6 3.2 44 92-135 2-46 (67)
129 5pal_A Parvalbumin; calcium-bi 29.8 52 0.0018 26.9 4.3 48 88-135 38-89 (109)
130 1rro_A RAT oncomodulin; calciu 29.8 51 0.0017 26.9 4.2 48 88-135 38-89 (108)
131 1dtl_A Cardiac troponin C; hel 29.7 2E+02 0.0068 24.5 8.4 48 88-135 92-140 (161)
132 3qrx_A Centrin; calcium-bindin 29.4 1.5E+02 0.0052 25.6 7.6 46 90-135 100-146 (169)
133 2be4_A Hypothetical protein LO 28.9 1.7E+02 0.0059 27.4 8.5 55 84-138 97-156 (272)
134 1bjf_A Neurocalcin delta; calc 28.2 3.1E+02 0.011 24.1 10.7 112 5-117 6-125 (193)
135 1avs_A Troponin C; muscle cont 28.1 57 0.0019 25.7 4.1 45 91-135 20-65 (90)
136 2efe_A Similarity to vacuolar 28.0 1.2E+02 0.0041 30.2 7.3 66 50-115 184-256 (267)
137 3ff5_A PEX14P, peroxisomal bio 27.6 72 0.0025 24.6 4.2 41 90-134 10-53 (54)
138 2obh_A Centrin-2; DNA repair c 27.4 71 0.0024 27.4 4.9 46 90-135 78-124 (143)
139 3u0k_A Rcamp; fluorescent prot 27.4 1.3E+02 0.0045 32.5 7.8 48 88-135 372-420 (440)
140 3dtp_E RLC, myosin regulatory 27.2 67 0.0023 29.4 5.0 49 87-135 122-170 (196)
141 2ovk_B RLC, myosin regulatory 26.9 83 0.0028 27.0 5.3 94 36-135 35-130 (153)
142 3mn2_A Probable ARAC family tr 26.5 1.5E+02 0.0053 24.4 6.8 41 91-135 2-42 (108)
143 3e3r_A Calcyphosin, calcyphosi 26.4 1.6E+02 0.0055 26.4 7.5 45 91-135 109-161 (204)
144 2dk8_A DNA-directed RNA polyme 26.1 32 0.0011 28.6 2.2 53 90-146 12-65 (81)
145 1gxg_A Colicin E8 immunity pro 25.9 2E+02 0.007 23.9 7.1 60 77-139 17-77 (85)
146 2mys_B Myosin; muscle protein, 25.6 3.2E+02 0.011 23.4 9.1 48 88-135 92-140 (166)
147 3a4u_B Multiple coagulation fa 25.4 62 0.0021 28.5 4.2 52 87-138 64-124 (143)
148 2kn2_A Calmodulin; S MAPK phos 25.3 68 0.0023 25.2 4.1 45 91-135 9-54 (92)
149 3ll8_B Calcineurin subunit B t 25.2 1.6E+02 0.0054 24.9 6.8 50 88-137 72-123 (155)
150 1rwy_A Parvalbumin alpha; EF-h 25.2 54 0.0018 26.7 3.5 48 88-135 38-89 (109)
151 1qx2_A Vitamin D-dependent cal 24.4 36 0.0012 25.7 2.1 48 88-135 2-54 (76)
152 1c7v_A CAVP, calcium vector pr 24.3 78 0.0027 24.2 4.2 46 89-135 7-54 (81)
153 2b1u_A Calmodulin-like protein 24.2 29 0.00099 25.8 1.5 47 89-135 4-51 (71)
154 2ktg_A Calmodulin, putative; e 24.1 68 0.0023 24.7 3.8 44 92-135 15-59 (85)
155 3oou_A LIN2118 protein; protei 23.2 1.5E+02 0.005 24.6 6.0 43 91-137 5-47 (108)
156 3oio_A Transcriptional regulat 23.0 1E+02 0.0035 25.8 5.0 43 90-136 6-48 (113)
157 3kzq_A Putative uncharacterize 22.8 1.1E+02 0.0039 28.4 5.7 44 4-47 120-163 (208)
158 1bu3_A Calcium-binding protein 22.8 61 0.0021 26.4 3.4 48 88-135 39-90 (109)
159 2ovk_C Myosin catalytic light 22.5 94 0.0032 26.8 4.8 48 87-134 81-129 (159)
160 2joj_A Centrin protein; N-term 22.4 40 0.0014 25.5 2.0 45 91-135 7-52 (77)
161 3k21_A PFCDPK3, calcium-depend 21.9 4.3E+02 0.015 23.6 10.0 41 88-128 119-162 (191)
162 1fr2_A Colicin E9 immunity pro 21.7 2.1E+02 0.0071 23.9 6.4 61 77-139 17-78 (86)
163 3h4s_E KCBP interacting Ca2+-b 21.5 1.2E+02 0.004 26.2 5.1 46 90-135 39-86 (135)
164 2c1x_A UDP-glucose flavonoid 3 21.2 1.5E+02 0.0052 31.4 7.0 69 112-186 380-454 (456)
165 1m45_A MLC1P, myosin light cha 21.1 72 0.0025 27.1 3.7 47 88-134 80-127 (148)
166 1bl0_A Protein (multiple antib 20.5 2.1E+02 0.0073 24.5 6.7 44 89-136 9-52 (129)
167 2f40_A Hypothetical protein PF 20.5 36 0.0012 28.8 1.4 19 304-322 6-24 (96)
168 1k8u_A S100A6, calcyclin, CACY 20.2 66 0.0023 25.1 3.0 45 91-135 10-60 (90)
No 1
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.7e-98 Score=832.36 Aligned_cols=352 Identities=28% Similarity=0.458 Sum_probs=328.8
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCccCCccc
Q 006869 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKITYTSDY 349 (628)
Q Consensus 270 ~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~ 349 (628)
.++|+|+|||||||||||||||||||++||++||++||+|+||||||||+|+.++|+++|+++|+|||+.||+++|||+|
T Consensus 92 ~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDtD~~R~~~e~~~~I~edL~wLGl~wd~~~~qSdr 171 (553)
T 3aii_A 92 GVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDTDPRRVDPEAYDMIPADLEWLGVEWDETVIQSDR 171 (553)
T ss_dssp SCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCTTHHHHHHHHHHHHTCCCSEEEEGGGG
T ss_pred CCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCCCCCCcccccC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCC
Q 006869 350 FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMY 429 (628)
Q Consensus 350 ~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~ 429 (628)
++.|+++|++||++|+||+|+||++++++.|...++++||+++.++++.+|++|++| .+|+++||+|+++.+++.+++
T Consensus 172 ~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G--~~g~~~lR~k~d~~~~n~~~~ 249 (553)
T 3aii_A 172 METYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM--KEGSAVVRVKTDLNHPNPAIR 249 (553)
T ss_dssp HHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS--CTTSCEEEECCCTTCSSGGGT
T ss_pred HHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC--CcCceEEEEEcccccCCCCCC
Confidence 999999999999999999999999999999887889999999999999999999999 568899999999988889999
Q ss_pred ceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCceeeeeeecCCCcc
Q 006869 430 DLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRLNVSNTV 509 (628)
Q Consensus 430 D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~Ln~~g~K 509 (628)
|||+||+...+||+|||+|+||||||||||||||+|||||||||.||+.|++.|.||+++||++.|.|||+++||.+|+|
T Consensus 250 Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~K 329 (553)
T 3aii_A 250 DWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVA 329 (553)
T ss_dssp TCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC-----
T ss_pred CcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCce
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhhccCCCCcceeec
Q 006869 510 MSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREELNKTAPRTMVVLN 589 (628)
Q Consensus 510 LSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~~~~~~r~~~v~d 589 (628)
||||+++++|++|+|+||||||++||++||++||+|+||++||+++||+.++..+++..|++++|+.++..+||.|+|+|
T Consensus 330 LSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~r~~l~~~a~R~~~V~~ 409 (553)
T 3aii_A 330 LSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLNRSILEEEARRYFFAAD 409 (553)
T ss_dssp --CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHHHHHHTTTCEEECEEES
T ss_pred echhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHHHHHhhccChhhhhccC
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred cceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 590 PLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 590 p~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
|+||+|+|+|.+ +.+++|+||+ +|++|+|+|+|+
T Consensus 410 p~kv~i~n~~~~--~~~~~p~hp~---~~~~G~r~v~~~ 443 (553)
T 3aii_A 410 PVKLEVVGLPGP--VRVERPLHPD---HPEIGNRVLELR 443 (553)
T ss_dssp EEEEEEETCCSC--EEEEEESCTT---CGGGCEEEEEES
T ss_pred cEEEEEeCCCCc--eEEEecCCCC---CCcCccEEEEEC
Confidence 999999999842 6789999998 899999999996
No 2
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=100.00 E-value=3.8e-97 Score=821.50 Aligned_cols=364 Identities=50% Similarity=0.897 Sum_probs=345.0
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCC
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~ 339 (628)
..++++.|+.. .++|||||||||||+|||||||||++||++||++||+|+|||||||++|+.++|+++|+++|+|||+.
T Consensus 12 ~~~i~~dl~~~~~~~v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDTD~~R~~~e~~~~I~edL~wLGl~ 91 (553)
T 1qtq_A 12 RQIIDEDLASGKHTTVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFH 91 (553)
T ss_dssp HHHHHHHHHHTSCSSCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCchhcCHHHHHHHHHHHHHcCCC
Confidence 34566666654 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh----ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 340 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 340 pd-~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~----~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
|| .++|||+|+++||++|++||++|+||+|+||+++|++.|+ ++++++||++++++++.+|++|++|.+.+|+++
T Consensus 92 wde~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~g~~~ 171 (553)
T 1qtq_A 92 WSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEEGKAC 171 (553)
T ss_dssp CSSSCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccCCceE
Confidence 96 5899999999999999999999999999999999999885 467889999999999999999999998889999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCC-
Q 006869 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY- 493 (628)
Q Consensus 415 lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~- 493 (628)
||+|+++.+++.++.|+|+||+...+|++|||+|+|+||||||||||||+|||||||||+||+.|++.|.||+++||++
T Consensus 172 lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~ 251 (553)
T 1qtq_A 172 LRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPV 251 (553)
T ss_dssp EEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSC
T ss_pred EEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCCC
Confidence 9999999889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHH
Q 006869 494 QPYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (628)
Q Consensus 494 ~P~~~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~i 573 (628)
.|.+|||+|||++|+|||||+++++|++|+|+||||||++||++||++||+|+||++||+++||+..+..+++++|++++
T Consensus 252 ~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~ 331 (553)
T 1qtq_A 252 HPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCI 331 (553)
T ss_dssp CCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHH
T ss_pred CCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999988878999999999
Q ss_pred HhhhccCCCCcceeeccceeEEecCCCCceeeeecccCCCCCCCCCCCceEEecC
Q 006869 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQADDASAFYKVIFE 628 (628)
Q Consensus 574 r~~~~~~~~r~~~v~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~~~~g~~~~~~~ 628 (628)
+..++..++|+|+||||+||.|.|+| +....+++|.||+ +|++|.|.+||+
T Consensus 332 ~~~l~~~~~r~~av~d~~Kl~~~N~~-~~~~~~~~p~~p~---~~~~g~r~~~~~ 382 (553)
T 1qtq_A 332 REDLNENAPRAMAVIDPVKLVIENYQ-GEGEMVTMPNHPN---KPEMGSRQVPFS 382 (553)
T ss_dssp HHHHHHHSCEECEESSEEEEEBTTCC-SSCEEEEEESCSS---CGGGCEEEEEEC
T ss_pred HhCcccccccccceeccceEEEEcCC-CceEEEEecCCCC---ChHHhhhhHhhC
Confidence 97777779999999999999999999 5567889999998 899999999985
No 3
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=100.00 E-value=8.3e-95 Score=832.06 Aligned_cols=363 Identities=41% Similarity=0.764 Sum_probs=346.1
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCC
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWE 339 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~ 339 (628)
.+++++.|+.. .+.|||||||||||||||||||||++||++||+|||+|+|||||||++|+.++|+++|+++|+|||+.
T Consensus 52 ~~ii~~dl~~g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDTD~~R~~~e~~~~IledL~wLGl~ 131 (851)
T 2hz7_A 52 TEIIERDLEAGKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDTNPELARQEYVDSIADDLKWLGLD 131 (851)
T ss_dssp HHHHHHHHHTTSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCTTTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhcCCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCcccccHHHHHHHHHHHHHcCCC
Confidence 45677777763 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh----ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 340 PF-KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE----KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 340 pd-~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~----~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
|| .++|||+|++.|+++|++||++|+||+|+||+++|.+.|+ ++++++||+++.++++.+|++|++|.+.+|+++
T Consensus 132 wde~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~m~~G~~~~g~~v 211 (851)
T 2hz7_A 132 WGEHFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEHV 211 (851)
T ss_dssp CTTCEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHHHHTTCSCTTSCE
T ss_pred CCCCcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHHHhcCCcccCCee
Confidence 96 5899999999999999999999999999999999999876 367888999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCC
Q 006869 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQ 494 (628)
Q Consensus 415 lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~ 494 (628)
||+|+++.+.+.+++|||+||+...+|++||++|+||||||||||||||+|||||||||.||+.|++.|.||+++||++.
T Consensus 212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~ 291 (851)
T 2hz7_A 212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP 291 (851)
T ss_dssp EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred EEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCC
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CceeeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHH
Q 006869 495 -PYVWEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHI 573 (628)
Q Consensus 495 -P~~~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~i 573 (628)
|.||||+|||++|+|||||+++++|++|+|+||||||++||.+||++||+|+||++||+++||+..+..+++++|+.++
T Consensus 292 ~P~~~~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 292 RPHQYEFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp CCEEEEECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHH
T ss_pred CCCceEEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988878999999999
Q ss_pred HhhhccCCCCcceeeccceeEEecCCCCceeeeecccCCCCCCC-------------------CCCCceEEecC
Q 006869 574 REELNKTAPRTMVVLNPLKVVITNMESGTIMHLDAKRWPDAQAD-------------------DASAFYKVIFE 628 (628)
Q Consensus 574 r~~~~~~~~r~~~v~dp~kl~i~n~~~~~~~~~~~p~~p~~~~~-------------------~~~g~~~~~~~ 628 (628)
+..++..++|+|+||||+||.|.|+|++. .+++|+||+ + |++|+|+|+|+
T Consensus 372 r~~l~~~~~r~~av~d~~Kl~~~N~~~~~--~~~~p~~p~---~~~~~~~~~~~~~~~~~~~~~~~g~r~v~~~ 440 (851)
T 2hz7_A 372 RDDLNHRAPRVMAVLDPVKVTLTNLDGEK--TLSLPYWPH---DVVRDSPDGLVGMPGGGRVAPEEAVRDVPLT 440 (851)
T ss_dssp HHHHHTTCCEECEESSEEEEEETTCCSCE--EEEEESSCH---HHHHTCTTSCEECSSSCEECGGGCEEEEEEC
T ss_pred HhcccccccccceEecceeEEEecCCCCe--EEEecCCcc---cccccccccccccccccccCccCceEEEEEc
Confidence 98888889999999999999999999875 889999998 7 89999999996
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=100.00 E-value=3.3e-78 Score=672.67 Aligned_cols=322 Identities=20% Similarity=0.247 Sum_probs=281.1
Q ss_pred HHHhhhhcC--CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCC
Q 006869 264 LDKHLEVTG--GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPF 341 (628)
Q Consensus 264 ~~~h~~~~~--~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd 341 (628)
|+.|....| ..|||||||||||+|||||||||++||+|||++||+|+|||||||++|++++|+++|+++|+||||+||
T Consensus 12 ~~~~~~~p~~~~~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wD 91 (512)
T 4gri_A 12 LEAQTQGPGSMLSTRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDTDQSRYSPEAENDLYSSLKWLGISFD 91 (512)
T ss_dssp ------------CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCHHHHHHHHHHHHHHTCCCS
T ss_pred hhhcccCCCCCCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCCcCCHHHHHHHHHHHHHcCCCCC
Confidence 444444433 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C---------ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhh
Q 006869 342 K---------ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMR 404 (628)
Q Consensus 342 ~---------~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~ 404 (628)
+ +++||+|++.|+++|++|+++|+||+|+||++|+++.|. +.|++.||+++.++. .
T Consensus 92 e~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~-------~ 164 (512)
T 4gri_A 92 EGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEV-------E 164 (512)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHH-------H
T ss_pred cCCccCCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhh-------h
Confidence 6 469999999999999999999999999999999998875 468899999987653 2
Q ss_pred cccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCc----ccccccccchhhhhhccCCcceeecCccccccc
Q 006869 405 NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDK----WCIYPSYDYAHCIVDSIENITHSLCTLEFETRR 480 (628)
Q Consensus 405 ~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~----~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~ 480 (628)
.+..+.+++++|+|+++ .++..+.|.|.|++.+..+...||. ++|+||||||||||||+|||||||||+||++||
T Consensus 165 ~~~~~~~~~~~R~k~~~-~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sT 243 (512)
T 4gri_A 165 NALIKKIKPVVRFKIPL-EGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSG 243 (512)
T ss_dssp HHHHTTCCCEEEECCCS-SCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGH
T ss_pred hhhhhhccceeeecccc-cCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceecccccccccc
Confidence 23334457999999985 4677899999999988877777764 478999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCC
Q 006869 481 ASYFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR 559 (628)
Q Consensus 481 ~~q~~L~~aLg~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~ 559 (628)
++|.||+++||+..|.|.|+|+ ++.+|+|||||+++ .++..||+.||.|+||.|||++||||.
T Consensus 244 p~q~~l~~alg~~~P~y~H~pli~~~~g~kLSKR~~~----------------~~v~~~~~~G~lPeAl~NyLalLGws~ 307 (512)
T 4gri_A 244 PLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGS----------------TALRQFIEDGYLPEAIINYVTLLGWSY 307 (512)
T ss_dssp HHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHSSBCS
T ss_pred HHHHHHHHHcCCCCCeEEecchhccccccccCccccc----------------ccHHHHHHcCCChHHHHHHHHHhCCCC
Confidence 9999999999999999999996 78999999999987 579999999999999999999999998
Q ss_pred CCcccchhhHHHHHHhhhccCCCCcceeeccceeEEec------CCCCceeeeeccc
Q 006869 560 SDSLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 610 (628)
Q Consensus 560 ~~~~~~~~~le~~ir~~~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~ 610 (628)
.+. .++++++++++.|+.+.+++++++||+.||.|.| ++.+++.....|+
T Consensus 308 ~~~-~Eifs~~eli~~Fdl~~v~ks~a~fD~~KL~~~N~~~i~~~~~~~l~~~~~~~ 363 (512)
T 4gri_A 308 DDK-REFFSKNDLEQFFSIEKINKSPAIFDYHKLDFFNSYYIREKKDEDLFNLLLPF 363 (512)
T ss_dssp SSS-CCCCCHHHHHHHCCGGGBCSSCCBCCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccc-chhhhHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 764 5779999999999999999999999999998887 5655554444443
No 5
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=100.00 E-value=5.5e-76 Score=649.79 Aligned_cols=312 Identities=20% Similarity=0.264 Sum_probs=283.0
Q ss_pred cCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC--------
Q 006869 271 TGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-------- 342 (628)
Q Consensus 271 ~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-------- 342 (628)
++++|||||||||||+|||||+||||+||++||++||+|+|||||||++|++++|+++|+++|+||||+||+
T Consensus 3 ~~~~vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDtD~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~ 82 (498)
T 2ja2_A 3 ATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGGPY 82 (498)
T ss_dssp SCCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTT
T ss_pred CCCCeeEEECcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCC
Confidence 456799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh-------ccCCCCCCCCCHHHHhHHHHHhhcccccCC-Ce
Q 006869 343 -ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE-------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KA 413 (628)
Q Consensus 343 -~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~-------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g-~~ 413 (628)
++|||+|++.|+++|++|+++|+||+|+||+++|++.|. ++|+++||+++.+|+... ..+| .+
T Consensus 83 ~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~--------~~~g~~~ 154 (498)
T 2ja2_A 83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAY--------LAEGRQP 154 (498)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHH--------HHTTCCC
T ss_pred CCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhh--------hccCCCc
Confidence 899999999999999999999999999999999988762 479999999999887542 2345 57
Q ss_pred EEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccc-----ccccccchhhhhhccCCcceeecCccccccchhHHHHHH
Q 006869 414 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWC-----IYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (628)
Q Consensus 414 ~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~-----~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~ 488 (628)
++|||++ .++..|.|.|.|++.++++.. ++|+ |+||||||||||||+|||||||||+||++++++|.+|++
T Consensus 155 ~iR~k~~--~~~~~~~D~v~G~i~~~~~~~--~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~ 230 (498)
T 2ja2_A 155 VVRLRMP--DDDLAWNDLVRGPVTFAAGSV--PDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQ 230 (498)
T ss_dssp EEEECCC--SSCEEEEETTTEEEEECTTCS--CCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred eEEEECC--CCceEEEecccceEeeccccc--CcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHH
Confidence 9999997 467889999999998877654 4664 799999999999999999999999999999999999999
Q ss_pred Hh-----CCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCc
Q 006869 489 AL-----GLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS 562 (628)
Q Consensus 489 aL-----g~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~ 562 (628)
+| |+..|.|.|+++ +|.+|+|||||+++ .+|.+|+++||+|+||+|||+.|||++.+.
T Consensus 231 aL~~~g~g~~~P~~~h~plil~~~g~KLSKR~g~----------------~~l~~~r~~G~~peAl~~~l~~lG~s~~~~ 294 (498)
T 2ja2_A 231 ALIRIGVAERIPKFAHLPTVLGEGTKKLSKRDPQ----------------SNLFAHRDRGFIPEGLLNYLALLGWSIADD 294 (498)
T ss_dssp HHHHTTSCCCCCEEEEECCEECSSSSBCCTTSGG----------------GBHHHHHHHTCCHHHHHHHHHTSSCCSCSS
T ss_pred HHHhhcCCCCCCeEEEeeeeECCCCCcccccCCc----------------ccHHHHHhCCCCHHHHHHHHHHhCCCCCcc
Confidence 99 999999998887 69999999999997 579999999999999999999999997664
Q ss_pred ccchhhHHHHHHhhhccCCCCcceeeccceeEEec------CCCCceeeeecccC
Q 006869 563 LIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (628)
Q Consensus 563 ~~~~~~le~~ir~~~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (628)
.++++++++++.|+.+.+++++++|||.||.|.| +|.+++.....|++
T Consensus 295 -~e~~s~~eli~~f~~~~~~~~~a~fd~~kL~~~N~~~i~~~~~~~l~~~l~~~l 348 (498)
T 2ja2_A 295 -HDLFGLDEMVAAFDVADVNSSPARFDQKKADALNAEHIRMLDVGDFTVRLRDHL 348 (498)
T ss_dssp -CCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -cccCCHHHHHhhCChhhcCccccccCHHHHHHhhHHHHHhcCHHHHHHHHHHHH
Confidence 4678899999999999999999999999999888 77776666666654
No 6
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=100.00 E-value=8.6e-76 Score=648.78 Aligned_cols=308 Identities=23% Similarity=0.304 Sum_probs=274.7
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcccHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQE 352 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd~~~~ 352 (628)
+|||||||||||+|||||+|||++||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+ +++||+|++.
T Consensus 1 ~v~~RFAPSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dL~wLGl~wde~~~~QS~r~~~ 80 (492)
T 2cfo_A 1 TVRVRLAPSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDRERSRPEYTENILEGLQWLGLTWDEGPYFQSDRLDL 80 (492)
T ss_dssp CCEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSSSSCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHH
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCccccchHHHHHHHHHHHHcCCCCCCCCccccCCHHH
Confidence 389999999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCC--
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ-- 422 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~-- 422 (628)
|++++++|+++|+||+||||++++++.|+ ++|+++||+++.+++. +.|..|. ++++|+|++..
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~---~~~~~g~----~~~iR~k~~~~~~ 153 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQA---AFEAAGR----TPVIRFKIEDDRQ 153 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHH---HHHHTTC----CCEEEECCCTTCE
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHH---HHHhCCC----CceEEEEcCCCCc
Confidence 99999999999999999999999998764 3699999999998765 3455443 58999998631
Q ss_pred ------------CCCCCC-CceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHH
Q 006869 423 ------------NDNFNM-YDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHA 489 (628)
Q Consensus 423 ------------~~~~~~-~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~a 489 (628)
..+.++ .|||+||... ++|.|+||||||||||||+|||||||||+||++|+++|.+|+++
T Consensus 154 ~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~a 226 (492)
T 2cfo_A 154 IEWQDLVRGRVSWQGADLGGDMVIARAAP-------RGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEA 226 (492)
T ss_dssp EEEEETTTEEEEEEGGGGCSSEEEECSCC-------TTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred eEEEecceeeeeecccccCCCeEEEEecC-------CCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence 245577 9999999832 23567999999999999999999999999999999999999999
Q ss_pred hCCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhh
Q 006869 490 LGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDR 568 (628)
Q Consensus 490 Lg~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~ 568 (628)
||+..|.|.|+|+ +|.+|+|||||+++ .+|.+|+++||+|+||+|||+.|||++.....++++
T Consensus 227 lg~~~P~~~H~plil~~~g~KLSKr~g~----------------~~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~ 290 (492)
T 2cfo_A 227 LGATPPNFAHTPLILNSTGQKLSKRDGV----------------TSISDFRAMGYLAPALANYMTLLGWSPPEGVGELFT 290 (492)
T ss_dssp TTCCCCEEEEECCEECSSSSBCCTTSSC----------------CBHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCC
T ss_pred cCCCCceEEEeeeEECCCCCEecccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccC
Confidence 9999999888898 79999999999997 479999999999999999999999997222246788
Q ss_pred HHHHHHhhhccCCCCcceeeccceeEEec------CCCCceeeeecccC
Q 006869 569 LEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (628)
Q Consensus 569 le~~ir~~~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (628)
++++++.|+.+.+++++++|||.||.|.| +|.+++.+...|++
T Consensus 291 ~~e~i~~f~~~~i~~~~~~~d~~kl~~~N~~~i~~~~~~~l~~~~~~~l 339 (492)
T 2cfo_A 291 LDLAAKHFSFERINKAGARFDWDKLNWLNRQYIQQLEPEEFLAELIPLW 339 (492)
T ss_dssp HHHHHHHCCSTTBCSSCEECCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhcChhhcCccccccCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999998887 66666655555543
No 7
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=100.00 E-value=8.8e-76 Score=645.21 Aligned_cols=288 Identities=24% Similarity=0.339 Sum_probs=260.3
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCCc---------c
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFKI---------T 344 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~~---------~ 344 (628)
+|||||||||||+|||||+|||++||++||++||+|+|||||||++|+.++|+++|+++|+|||++||+. +
T Consensus 1 ~v~~RFaPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~ 80 (468)
T 1j09_A 1 MVVTRIAPSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDTDRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPY 80 (468)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCe
Confidence 3899999999999999999999999999999999999999999999999999999999999999999974 8
Q ss_pred CCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhc--cCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecC-
Q 006869 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREK--KMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDM- 421 (628)
Q Consensus 345 ~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~--~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~- 421 (628)
+||+|++.|+++|++|+++|+||+|+||++++++.|+. +|+++||+++.+|+.. .|..|+ ++++|||++.
T Consensus 81 ~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~---~~~~g~----~~~~R~k~~~~ 153 (468)
T 1j09_A 81 RQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEE---RARRGE----PHVIRLKVPRP 153 (468)
T ss_dssp BGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHH---HHHTTC----CCEEEECCCSS
T ss_pred eccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHH---HHhcCC----CceEEEecCCC
Confidence 99999999999999999999999999999999988753 6999999999988654 344443 5899999873
Q ss_pred -------------CCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHH
Q 006869 422 -------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (628)
Q Consensus 422 -------------~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~ 488 (628)
..++.++.|+|++|. + |+||||||||||||+|||||||||.||++++++|.||++
T Consensus 154 ~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------d-----g~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~ 221 (468)
T 1j09_A 154 GTTEVKDELRGVVVYDNQEIPDVVLLKS-------D-----GYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYR 221 (468)
T ss_dssp CEEEEEETTTEEEEEEGGGSCCCEEECT-------T-----SCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred CceEEEeccceeEeecccCCCCeEEEec-------C-----CCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHH
Confidence 223344566666665 3 599999999999999999999999999999999999999
Q ss_pred HhCCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchh
Q 006869 489 ALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (628)
Q Consensus 489 aLg~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~ 567 (628)
+||+..|.|.|+++ +|.+|+|||||+++ .+|.+|+++||+|+||+|||+.|||+..+. .++.
T Consensus 222 alg~~~p~~~h~~li~~~~g~klSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~~~~~~-~~~~ 284 (468)
T 1j09_A 222 AFGWEAPRFYHMPLLRNPDKTKISKRKSH----------------TSLDWYKAEGFLPEALRNYLCLMGFSMPDG-REIF 284 (468)
T ss_dssp HHTCCCCEEEEECCCBCTTSCBCCTTTSC----------------CBHHHHHHTTCCHHHHHHHHHHHSCCCTTC-CSCC
T ss_pred HcCCCCCeEEEeeeeeCCCCCccccccch----------------hhHHHHHHCCCCHHHHHHHHHHhccCCccc-ccCC
Confidence 99999998888887 69999999999997 479999999999999999999999997654 3567
Q ss_pred hHHHHHHhhhccCCCCcceeeccceeEEec
Q 006869 568 RLEYHIREELNKTAPRTMVVLNPLKVVITN 597 (628)
Q Consensus 568 ~le~~ir~~~~~~~~r~~~v~dp~kl~i~n 597 (628)
.++++++.|+.+.+++++++|||.||.|.|
T Consensus 285 ~~~el~~~f~~~~~~~~~~~~d~~kl~~~N 314 (468)
T 1j09_A 285 TLEEFIQAFTWERVSLGGPVFDLEKLRWMN 314 (468)
T ss_dssp CHHHHHHHCCGGGCCCSCCBCCHHHHHHHH
T ss_pred CHHHHHhhCChhhcCccccccChHHhhhhc
Confidence 899999999999999999999999998777
No 8
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=100.00 E-value=8.7e-75 Score=637.48 Aligned_cols=300 Identities=23% Similarity=0.344 Sum_probs=257.9
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcccHH
Q 006869 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYFQ 351 (628)
Q Consensus 273 ~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd~~~ 351 (628)
++|||||||||||+|||||+|||++||++||++||+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|++
T Consensus 24 ~~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~ 103 (490)
T 4g6z_A 24 RPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMAWLGLDYDEGPYYQMQRMD 103 (490)
T ss_dssp CCCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCCGGGCCHHHHHHHHHHHHHTTCCCSEEEEEGGGCHH
T ss_pred CCceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCCCcccccHHHHHHHHHHHHHcCCCCCCCCcccccCHH
Confidence 5699999999999999999999999999999999999999999999999999999999999999999997 689999999
Q ss_pred HHHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCCCCCCCHHHHhHHHHHhhcccccCC-CeEEEEEecC-
Q 006869 352 ELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSPWRDRPIAESLKLFEDMRNGRIEEG-KATLRMKQDM- 421 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g-~~~lRlk~d~- 421 (628)
.|++++++|+++|+||+|+||++++++.|+ ++|+++||+++.++. ....+| ++++|||++.
T Consensus 104 ~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~---------~~~~~g~~~~~R~k~~~~ 174 (490)
T 4g6z_A 104 RYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVL---------PEPPAGVAPVLRFRNPLT 174 (490)
T ss_dssp HHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCC---------CCCCTTCCCEEEECCCCS
T ss_pred HHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhh---------hhhhcCCCceEEEecCCC
Confidence 999999999999999999999999988764 469999999985421 112344 5899999752
Q ss_pred -------------CCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHH
Q 006869 422 -------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLH 488 (628)
Q Consensus 422 -------------~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~ 488 (628)
...+..++|+|++|+ +| +||||||||||||+|||||||||+||++||++|.+|++
T Consensus 175 ~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------DG-----~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~ 242 (490)
T 4g6z_A 175 GTVAWDDAVKGRVEISNEELDDLVVARP-------DG-----TPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILR 242 (490)
T ss_dssp SEEEEEETTTEEEEEEGGGCCCCEEECT-------TS-----CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHH
T ss_pred CcEEEEEeeeeeeeeccccCCCeEEEee-------CC-----CccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHH
Confidence 122445677777776 44 99999999999999999999999999999999999999
Q ss_pred HhCCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchh
Q 006869 489 ALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (628)
Q Consensus 489 aLg~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~ 567 (628)
+||+..|.|.|+|+ +|.+|+|||||+++ .+|.+||++||+|+||+|||+.|||+..+ .+++
T Consensus 243 aLG~~~P~f~HlpLi~~~~g~KLSKR~g~----------------~sl~~~r~~G~~peal~n~l~~lG~s~~~--~e~~ 304 (490)
T 4g6z_A 243 ALGGEVPVYAHLPTVLNEQGEKMSKRHGA----------------MSVMGYRDAGYLPEAVLNYLARLGWSHGD--AEIF 304 (490)
T ss_dssp HTTCCCCEEEEECCEECTTSSBCCTTTTC----------------CBHHHHHHTTCCHHHHHHHHHTSSBCCTT--CCCC
T ss_pred HcCCCCCeEEEecceeCCCCCcccCCCCC----------------cCHHHHHHCCCCHHHHHHHHHHhCCCCCC--cccc
Confidence 99999999999987 69999999999986 68999999999999999999999999765 3678
Q ss_pred hHHHHHHhhhccCCCCcceeeccceeEEec------CCCCceeeeecccC
Q 006869 568 RLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (628)
Q Consensus 568 ~le~~ir~~~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (628)
+++++++.|+.+.+++++++||+.||.|.| ++.+++.....|++
T Consensus 305 s~~eli~~F~~~~~~~~~~~fd~~KL~~~N~~~i~~~~~~~l~~~~~~~l 354 (490)
T 4g6z_A 305 TREQFVEWFDLEHLGKSPAQYDHNKLNWLNNHYIKEADDARLAGLAKPFF 354 (490)
T ss_dssp CHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHhhCCHhhCCCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899999999999999999999999998888 66666655555554
No 9
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=100.00 E-value=2.4e-72 Score=620.36 Aligned_cols=303 Identities=21% Similarity=0.301 Sum_probs=261.1
Q ss_pred hcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-------
Q 006869 270 VTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK------- 342 (628)
Q Consensus 270 ~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~------- 342 (628)
.++++|||||||||||+|||||+|||++||++||++||+|+|||||||++|++++++++|+++|+|||++||+
T Consensus 21 ~~~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~ 100 (488)
T 3afh_A 21 RCFELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGD 100 (488)
T ss_dssp ----CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBCT
T ss_pred hcCCCceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeCCcccccHHHHHHHHHHHHHcCCCCCcCCCCCCC
Confidence 3446799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEec
Q 006869 343 --ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQD 420 (628)
Q Consensus 343 --~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d 420 (628)
+++||+|++.|++++++|+++|+||+|+||++++++...+.|++. . +.+..|+ ++++|+|++
T Consensus 101 ~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~------~------~~~~~G~----~~~iR~k~~ 164 (488)
T 3afh_A 101 FGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL 164 (488)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCC------H------HHHHTTC----CEEEEECCC
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCch------h------hHHhcCC----CceEEEECC
Confidence 489999999999999999999999999999999987644566654 1 1222332 589999987
Q ss_pred CCCCCCCCCceEEEEEecCCCCCCCCcc-----cccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCC
Q 006869 421 MQNDNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQP 495 (628)
Q Consensus 421 ~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P 495 (628)
.++..+.|.|.+++.++++.. ++| +|+||||||||||||+|||||||||+||++|+++|.||+++||+..|
T Consensus 165 --~~~~~~~D~v~G~~~~~~~~~--~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P 240 (488)
T 3afh_A 165 --PGKTSFEDLLKGYMEFDNSTL--EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAP 240 (488)
T ss_dssp --SSEEEEEETTTEEEEEEGGGS--CCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCC
T ss_pred --CCceeEEeccceeEeecCCCC--CCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCC
Confidence 345556666666665444321 234 36999999999999999999999999999999999999999999999
Q ss_pred ceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHH
Q 006869 496 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 496 ~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
.|.|+|+ +|.+|+|||||+++ .+|.+||++||+|+||+|||+.|||++.+. ++++++++++
T Consensus 241 ~f~H~pli~~~~g~KLSKR~g~----------------~~l~~~r~~G~~peal~n~l~~lG~s~~~~--e~~s~~e~i~ 302 (488)
T 3afh_A 241 VFMHIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQ 302 (488)
T ss_dssp EEEEECCEECTTSSBCCTTTSC----------------CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC--SCCCHHHHGG
T ss_pred eEEEEeeeeCCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHh
Confidence 9998887 59999999999997 479999999999999999999999997654 6788999999
Q ss_pred hhhccCCCCcceeeccceeEEec------CCCCceeeeeccc
Q 006869 575 EELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKR 610 (628)
Q Consensus 575 ~~~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~ 610 (628)
.|+.+.++|++++|||.||.|.| +|.+++.....|+
T Consensus 303 ~f~~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~~l~~~l~~~ 344 (488)
T 3afh_A 303 SFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEW 344 (488)
T ss_dssp GCCGGGSCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hCChhhcCccccccChHHhhhccHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999998887 6766665555554
No 10
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-69 Score=609.56 Aligned_cols=301 Identities=21% Similarity=0.307 Sum_probs=259.1
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC---------c
Q 006869 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------I 343 (628)
Q Consensus 273 ~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~---------~ 343 (628)
++|+|||||||||+|||||+|+|++||++||++||+|+|||||||++|+.++++++|+++|+|||++||+ +
T Consensus 128 ~~v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDtD~~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG~~gp 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCcChhhccHHHHHHHHHHHHHcCCCCCCCCCcCCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCC
Q 006869 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 423 (628)
Q Consensus 344 ~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~ 423 (628)
+|||+|++.|++++++|+++|+||+|+||++++++...++|++. . +.+..|+ ++++|+|++ .
T Consensus 208 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~------~------~~~~~g~----~~~iR~k~~--~ 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYP------H------EYKEKGH----PVTIKFKVL--P 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCC------H------HHHHTTC----CEEEEECCC--S
T ss_pred eeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcH------H------HHhhcCC----CceEEEECC--C
Confidence 79999999999999999999999999999999976533455543 1 1233332 589999987 3
Q ss_pred CCCCCCceEEEEEecCCCCCCCCcc-----cccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCcee
Q 006869 424 DNFNMYDLIAYRIKFTPHPHAGDKW-----CIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPYVW 498 (628)
Q Consensus 424 ~~~~~~D~Vl~R~~~~~h~~~gd~~-----~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~ 498 (628)
++..+.|.|.|++.++++.. ++| +|+||||||||||||+|||||||||+||++++++|.||+++||++.|.|.
T Consensus 270 ~~~~~~D~v~G~~~~~~~~~--~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~ 347 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTL--EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFM 347 (592)
T ss_dssp SCCEECCTTTCSEECCSSSS--CCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCC
T ss_pred CCceeeecccceeeeccccC--CCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEE
Confidence 44455555555554433221 233 35999999999999999999999999999999999999999999999988
Q ss_pred eeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhh
Q 006869 499 EYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (628)
Q Consensus 499 ~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~ 577 (628)
|+|+ +|.+|+|||||+|+ .+|.+||++||+|+||+|||+.|||++.+. ++++++++++.|+
T Consensus 348 hlpli~~~~g~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~~--e~~s~~e~i~~f~ 409 (592)
T 3al0_C 348 HIPLILGSDRTPLSKRHGA----------------TSVEHFRREGILSRALMNYLALLGWRVEGD--EIFTIEEKLQSFD 409 (592)
T ss_dssp EECCCBCTTSSBCCTTTCS----------------SBHHHHHHTTCCHHHHHHHHTTTTBCCCSC--SCCCTTTTGGGCC
T ss_pred EeeeeeCCCCCcccccCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCccc--ccCCHHHHHhhCC
Confidence 8887 59999999999997 479999999999999999999999997654 6678899999999
Q ss_pred ccCCCCcceeeccceeEEec------CCCCceeeeecccC
Q 006869 578 NKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (628)
Q Consensus 578 ~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (628)
.+.++|++++|||.||.|.| +|.+++.....|++
T Consensus 410 ~~~i~~~~~~fd~~kl~~~N~~~i~~~~~~~l~~~~~~~~ 449 (592)
T 3al0_C 410 PKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEWA 449 (592)
T ss_dssp TTSBCSSCCBCCHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhhcCcccceeCHHHHhhhhHHHhhcCCHHHHHHHHHHHH
Confidence 99999999999999998888 67666666655543
No 11
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=100.00 E-value=4.5e-68 Score=586.44 Aligned_cols=301 Identities=23% Similarity=0.307 Sum_probs=266.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC---------ccC
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK---------ITY 345 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~---------~~~ 345 (628)
||+||||||||+|||||+|+|++||++||.+||+|+|||||||++|++++++++|+++|+|||++||+ ++|
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~~r~~~~~~~~I~~~l~wlGl~~de~p~~gg~~g~y~ 93 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDLERSEREYEEKLMESLRWLGLLWDEGPDVGGDHGPYR 93 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSCCSGGGHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCccccHHHHHHHHHHHHHHcCCCCCCCcccCCCCCcee
Confidence 79999999999999999999999999999999999999999999999999999999999999999996 489
Q ss_pred CcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhh--------ccCCCC--CCCCCHHHHhHHHHHhhcccccCCCeEE
Q 006869 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYRE--------KKMNSP--WRDRPIAESLKLFEDMRNGRIEEGKATL 415 (628)
Q Consensus 346 qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~--------~~y~~~--~R~~~~ee~l~~f~~m~~G~~~~g~~~l 415 (628)
||+|++.|+++|++|+++|+||+|+||++++++.|+ +.|++. ||+++.+|+.. .|..|. ++++
T Consensus 94 QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~---~~~~G~----~~~i 166 (481)
T 2o5r_A 94 QSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRRE---YEEKGL----RPAV 166 (481)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHH---HHHTTC----CCEE
T ss_pred eeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHH---HHhcCC----cceE
Confidence 999999999999999999999999999999988764 368988 99999887653 344453 5899
Q ss_pred EEEecC-------------CCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchh
Q 006869 416 RMKQDM-------------QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRAS 482 (628)
Q Consensus 416 Rlk~d~-------------~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~ 482 (628)
|+|++. ...+..+.|+|++|. + |+||||||||||||+|||||||||.||+.++++
T Consensus 167 R~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------D-----G~ptY~~a~vvDD~~~githvirG~D~~~~t~~ 234 (481)
T 2o5r_A 167 FFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS-------N-----GLPTYNFACVVDDMLMEITHVIRGDDHLSNTLR 234 (481)
T ss_dssp EECCCSSCEEEEETTTEEEEECTTSSCBEEEECT-------T-----SCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred EEEcCCCceEEEecccceeEeccccCCCeEEEcc-------C-----CCcchhhHHHHHHHhCCCCeEEEChhHHHhHHH
Confidence 999762 123345667777776 4 499999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCC
Q 006869 483 YFWLLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD 561 (628)
Q Consensus 483 q~~L~~aLg~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~ 561 (628)
|.||+++||+..|.|.|+++ +|.+|+|||||+|+ .+|.+|+++||.|+||++|++.|||+...
T Consensus 235 q~~l~~aLG~~~p~~~H~plil~~~G~KLSKR~g~----------------~~l~~~~~~G~~peal~~~l~~lG~s~~~ 298 (481)
T 2o5r_A 235 QLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGA----------------TSVEAFRDMGYLPEALVNYLALLGWSHPE 298 (481)
T ss_dssp HHHHHHHTTCCCCEEEEECCEECTTSSBCCGGGSC----------------CBHHHHHHHTCCHHHHHHHHHTSSBCCTT
T ss_pred HHHHHHHcCCCCCeEEEEeeEECCCCCcccCcCCc----------------ccHHHHHHCCCCHHHHHHHHHHhCCCCCc
Confidence 99999999999999888886 79999999999997 47999999999999999999999999743
Q ss_pred cccchhhHHHHHHhhhccCCCCcceeeccceeEEec------CCCCceeeeecccC
Q 006869 562 SLIRLDRLEYHIREELNKTAPRTMVVLNPLKVVITN------MESGTIMHLDAKRW 611 (628)
Q Consensus 562 ~~~~~~~le~~ir~~~~~~~~r~~~v~dp~kl~i~n------~~~~~~~~~~~p~~ 611 (628)
. .++..++++++.|+...+++.+++|||.|+.+.| +|.+++.....|++
T Consensus 299 ~-~e~~~~~e~i~~f~l~~~~~~~~~fd~~kl~~~n~~~i~~~~~~~l~~~~~~~l 353 (481)
T 2o5r_A 299 G-KELLTLEELISSFSLDRLSPNPAIFDPQKLKWMNGYYLRNMPIEKLAELAKPFF 353 (481)
T ss_dssp C-CCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred c-cccCCHHHHHHhCChhhCCccCcccChHHhhhhCHHHHHhcCHHHHHHHHHHHH
Confidence 2 2457789999999999999999999999998776 67766655555543
No 12
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=100.00 E-value=9.6e-66 Score=536.66 Aligned_cols=268 Identities=19% Similarity=0.232 Sum_probs=220.1
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCcccccHHHHHHHHHHHHHcCCCCCC-ccCCcccH
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWEPFK-ITYTSDYF 350 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~~r~~~~~~~~I~~~L~wLGl~pd~-~~~qSd~~ 350 (628)
.++|||||||||||+|||||+|+|++||++||+++|+|+|||||||++|+.++|+++|+++|+|||+.||+ +++||+|+
T Consensus 3 ~~~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD~~R~~~~~~~~I~~dL~~LGl~~D~~~~~qSer~ 82 (298)
T 1nzj_A 3 DTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRH 82 (298)
T ss_dssp -CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSSCCEEGGGCH
T ss_pred CCCeEEEECcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCCchhhHHHHHHHHHHHHHHcCCCCCCCCeeeeCCH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCC--------
Q 006869 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ-------- 422 (628)
Q Consensus 351 ~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~-------- 422 (628)
+.|++++++|+++|+||+|+||++++++... .|++.||.++.+ | ...++|+|++..
T Consensus 83 ~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~-~Y~g~cr~~~~~-----------g----~~~~~R~r~~~~~~~f~D~~ 146 (298)
T 1nzj_A 83 DAYREALAWLHEQGLSYYCTCTRARIQSIGG-IYDGHCRVLHHG-----------P----DNAAVRIRQQHPVTQFTDQL 146 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCHHHHHHTTS-SCCCTTTTTCCC-----------S----TTCEEEECCSSCCCEEEETT
T ss_pred HHHHHHHHHHHHcCCcccCcCCHHHHHHcCC-CCCCccccCCcC-----------C----CCCcEEEecCCcccceehhh
Confidence 9999999999999999999999999987644 799999987643 1 246889987621
Q ss_pred -----CC-CCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCCCCc
Q 006869 423 -----ND-NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLYQPY 496 (628)
Q Consensus 423 -----~~-~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~~P~ 496 (628)
.. +.++.|+|+||. +| +|||||||||||++|||||||||.||+.++++|.+|+++||+..|.
T Consensus 147 ~G~~~~~~~~~~~D~VL~R~-------dG-----~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~ 214 (298)
T 1nzj_A 147 RGIIHADEKLAREDFIIHRR-------DG-----LFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD 214 (298)
T ss_dssp TEEEECCHHHHHSCCEEECT-------TS-----CBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE
T ss_pred CcccccCcccCCCCEEEECC-------CC-----CEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCe
Confidence 01 135678888885 45 9999999999999999999999999999999999999999999999
Q ss_pred eeeeeee-cCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCc--ccchh-hHHHH
Q 006869 497 VWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDS--LIRLD-RLEYH 572 (628)
Q Consensus 497 ~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~--~~~~~-~le~~ 572 (628)
|+|++++ |.+|+|||||+++..|++. +|+ ..+.+|++.|||++... ..++. .|+++
T Consensus 215 ~~H~pll~~~~g~KLSKR~g~~~v~~~------~~~--------------~~~~~~l~~lG~~~~~~~~~~~~~~~l~~~ 274 (298)
T 1nzj_A 215 YIHLPLALNPQGAKLSKQNHAPALPKG------DPR--------------PVLIAALQFLGQQAEAHWQDFSVEQILQSA 274 (298)
T ss_dssp EEEECBCCC-------------CCCSS------CCH--------------HHHHHHHHHTTCCCCSCGGGSCHHHHHHHH
T ss_pred EEEeeeeECCCCCcccccCCccChhcC------Ccc--------------HHHHHHHHHcCCCCCcccccCCHHHHHHHH
Confidence 9999985 9999999999999776552 232 34788889999987653 23333 36789
Q ss_pred HHhhhccCCCCccee
Q 006869 573 IREELNKTAPRTMVV 587 (628)
Q Consensus 573 ir~~~~~~~~r~~~v 587 (628)
|+.|+.+.+++++.+
T Consensus 275 ~~~f~~~~~~~~~~~ 289 (298)
T 1nzj_A 275 VKNWRLTAVPESAIV 289 (298)
T ss_dssp HHTCCGGGSCCCSBC
T ss_pred HHhCCHhhCCCCCCc
Confidence 999999999998753
No 13
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-57 Score=440.87 Aligned_cols=181 Identities=29% Similarity=0.500 Sum_probs=176.1
Q ss_pred hhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchhHHHHHHhhCCCC
Q 006869 9 KSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIK 88 (628)
Q Consensus 9 ~~~~~~~f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~~l~~~I~~gklk 88 (628)
.+++++||++|||+|+||+||+||++++++|..+|++++...+||+++|+|||+|||+++++..+||++|++||++|+|+
T Consensus 4 ~~~l~~lf~~iGL~e~kaket~kN~kls~~L~~~i~ea~~~~~~dk~~g~LLy~latk~k~~~~~~r~~l~~~I~~gklk 83 (187)
T 3tl4_X 4 VEELTQLFSQVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFVKGTDLPKSELIVNGIINGDLK 83 (187)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTSHHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTSCC
T ss_pred hHHHHHHHHHcCCChhHHHHHHhCHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhccCccchhHHHHHHHHHhccCC
Confidence 37899999999999999999999999999999999999987789999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHh--hCCCC
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRK--RLPWA 166 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~--~LkWA 166 (628)
|++||+||++|++++ .+++|+++||++|||||+||+|||+++|++||++|+++|+++||+ |+|+||++||+ .||||
T Consensus 84 t~~Qv~AAl~yl~~~-~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~i~~~RY~-~~g~ll~~vr~~p~LkWA 161 (187)
T 3tl4_X 84 TSLQVDAAFKYVKAN-GEASTKMGMNENSGVGIEITEDQVRNYVMQYIQENKERILTERYK-LVPGIFADVKNLKELKWA 161 (187)
T ss_dssp SHHHHHHHHHHHHHH-GGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTHHHHHHHGGG-GHHHHHHHHHTCGGGTTS
T ss_pred cHHHHHHHHHHHHhC-CCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHHHhHHHHHHhccc-cHHHHHHHHhcccCCCCC
Confidence 999999999999988 588999999999999999999999999999999999999999999 99999999999 79999
Q ss_pred ChhhhHHHHHHHHHHhcCCCchhhh
Q 006869 167 DPKIVKQLIDARMYELLGERTAADI 191 (628)
Q Consensus 167 d~~~vK~~vd~~~~~llgpk~~~d~ 191 (628)
||+.||++||++|+++|||||++|+
T Consensus 162 d~~~vK~~vD~~~l~lLGPKte~D~ 186 (187)
T 3tl4_X 162 DPRSFKPIIDQEVLKLLGPKDERDL 186 (187)
T ss_dssp CTTSHHHHHHHHHHHHHCSCCGGGC
T ss_pred CHHHHHHHHHHHHHHHcCCcccccc
Confidence 9999999999999999999999985
No 14
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.96 E-value=5.3e-31 Score=294.30 Aligned_cols=275 Identities=14% Similarity=0.104 Sum_probs=175.0
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHH-----HHcCCEEEEeeecCCccccc--------------------------
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLA-----KERGGYCYLRYDDTNPEAEK-------------------------- 322 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~A-----r~~~G~~iLRidDtD~~r~~-------------------------- 322 (628)
.+++.-+|||||++||||+|++++++++| ++++|+|++||||||+.|..
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 46666699999999999999999997775 57899999999999965533
Q ss_pred ----HHHHHHHHHHHHHcCCCCCCccCCcc-cHH-HHHHHHHHHHHcC-CccccCCCHHHHH--------HHhhccCCCC
Q 006869 323 ----KEYIDHIEEIVQWMGWEPFKITYTSD-YFQ-ELYELAVELIRRG-HAYVDHQTPEEIK--------EYREKKMNSP 387 (628)
Q Consensus 323 ----~~~~~~I~~~L~wLGl~pd~~~~qSd-~~~-~~~e~a~~Li~~G-~AY~C~cs~eei~--------~~r~~~y~~~ 387 (628)
+.+.+.|+++|+|||+.||.. +||+ |.+ .|.+++++|+++| .+|.|.+....+. -....+|...
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~~~~~~~~~~~ 179 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPE 179 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCCceeccccchh
Confidence 449999999999999998877 9999 888 8999999999999 6666542111100 0000123334
Q ss_pred CCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceE--EEEEecCCCCCCCCcccccccccchhhhhhccC
Q 006869 388 WRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI--AYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE 465 (628)
Q Consensus 388 ~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~V--l~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~ 465 (628)
|+..+.+ . .... ..++|++.. .+...+.|.+ .+|.. |.-+ +++|+|+|.++|| .|
T Consensus 180 ~~~~~~~--~---------~~~~-~~~~~f~~~--~g~~~~~d~~~G~g~~~------w~~d-~~~~~~~l~~~vd--~~ 236 (523)
T 1irx_A 180 HRREAEI--I---------EWDG-GWKVKYKCP--EGHEGWVDIRSGNVKLR------WRVD-WPMRWSHFGVDFE--PA 236 (523)
T ss_dssp TCCEECE--E---------EECS-SSCEEECCS--SSCCCEECTTSSCEEEC------HHHH-HHHHHHHSCCCBC--CE
T ss_pred hCCcccc--c---------ccCC-CCceeeeec--CCCccccCCcCCCCCCC------CCcc-hHhhHHHcCCCCc--CC
Confidence 5433211 0 0111 133555541 1222222332 12211 0001 2567778887776 88
Q ss_pred CcceeecC--ccccccchhHHHHH-HHhCCCCCceeeeeeecCC--CcccccccccccccccccCCCCCcchhhHHHHHH
Q 006869 466 NITHSLCT--LEFETRRASYFWLL-HALGLYQPYVWEYSRLNVS--NTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRR 540 (628)
Q Consensus 466 ~IThvirG--~e~~~~~~~q~~L~-~aLg~~~P~~~~~~~Ln~~--g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~ 540 (628)
|++|+.+| .+|. .+++ .+||+..|.+.|++++..+ |.|||||+|+. .++..+++
T Consensus 237 G~Dh~~~h~s~~~~------~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~---------------i~~~~~~~ 295 (523)
T 1irx_A 237 GKDHLVAGSSYDTG------KEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNV---------------ILLSDLYE 295 (523)
T ss_dssp EHHHHSTTSHHHHH------HHHHHHHHCCCCCBCCEECCEEESCC---------CC---------------CCHHHHHT
T ss_pred CcCccCCCcchhhH------HHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCC---------------CCHHHHHH
Confidence 88888876 3333 3444 6999988877778886555 99999999972 58999999
Q ss_pred cCCCHHHHHHHHHHcCCCCCCcccchh-hHHHHHHhhhccCCCCcceeeccc--eeEEec
Q 006869 541 RGVTSTSINAFVQGIGISRSDSLIRLD-RLEYHIREELNKTAPRTMVVLNPL--KVVITN 597 (628)
Q Consensus 541 ~G~~peaI~~fl~~lG~t~~~~~~~~~-~le~~ir~~~~~~~~r~~~v~dp~--kl~i~n 597 (628)
. |.|+++++||+++|+.. +..++.. .|+++++.|. ++.+..+.+++. |+.|.|
T Consensus 296 ~-~~pdalR~~l~~~~~~~-~~~fs~~~~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~n 351 (523)
T 1irx_A 296 V-LEPGLVRFIYARHRPNK-EIKIDLGLGILNLYDEFE--KVERIYFGVEGGKGDDEELR 351 (523)
T ss_dssp T-SCHHHHHHHHHSSCTTS-CEEECCSTTHHHHHHHHH--HHHHHHTTSCC-----CHHH
T ss_pred H-cCHHHHHHHHHhcCCCC-CceeCcchhHHHHHHHHH--HHHHHHhcccccchhhhhhc
Confidence 9 99999999999988864 3346666 7888877663 344455555654 455555
No 15
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=1.9e-25 Score=245.12 Aligned_cols=252 Identities=14% Similarity=0.149 Sum_probs=179.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcCCCCC
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWEPF 341 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLGl~pd 341 (628)
.|+|+|++||||+|++++.+.++| .++..|+.++||+|.+ .....|.+.+.+++++||+.++
T Consensus 32 GPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d 111 (462)
T 3tqo_A 32 GMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSP 111 (462)
T ss_dssp CCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 799999999999999998877777 4667999999999863 2356889999999999999976
Q ss_pred C-ccCCcccHHHHHHHHHHHHHcCCcc------ccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 342 K-ITYTSDYFQELYELAVELIRRGHAY------VDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 342 ~-~~~qSd~~~~~~e~a~~Li~~G~AY------~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
. .++.|+|++.+.+++++|+++|+|| +|||.+.. +.|+..++ ++.+ +|..|.
T Consensus 112 ~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~------~~yg~Ls~-~~~~-------~~~~g~------- 170 (462)
T 3tqo_A 112 DQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF------KDYGKLSH-RHLD-------ELQAGA------- 170 (462)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC------TTTTTTTT-CSCC--------------------
T ss_pred ccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc------cccccccC-CChH-------HhhccC-------
Confidence 5 5589999999999999999999999 45665431 23443222 2221 233332
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhhhhhc-cC--CcceeecCccccc-cchhHHHHHH-
Q 006869 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCIVDS-IE--NITHSLCTLEFET-RRASYFWLLH- 488 (628)
Q Consensus 415 lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~VDD~-~~--~IThvirG~e~~~-~~~~q~~L~~- 488 (628)
|+..+ ..+.+..||++||...+.+|.|.++| .|.|+||+.|++... .. .++-..-|.|++- +-........
T Consensus 171 -r~~~~--~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a 247 (462)
T 3tqo_A 171 -RVEVS--DSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEA 247 (462)
T ss_dssp ---------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHH
T ss_pred -ccccc--cccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHH
Confidence 43332 34566789999999999999999999 899999999976432 22 2333334555432 1111111122
Q ss_pred HhCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchh
Q 006869 489 ALGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLD 567 (628)
Q Consensus 489 aLg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~ 567 (628)
+.|.+.+.+|.| ++++.+|.|||||.|+ .+++..+.+. |.|+++|.|+++-++.. +-.++..
T Consensus 248 ~~g~p~~~~w~H~g~v~~~G~KMSKSlGN---------------~i~~~dll~~-~g~dalR~~lls~~yr~-~l~fs~~ 310 (462)
T 3tqo_A 248 GEEKPFVKLWMHAGLLEINKEKMSKSLGN---------------IISIREALKE-SDVEVLRYFLLSGHYRN-PLSYSKE 310 (462)
T ss_dssp HHSSCCEEEEEEECCEEETTEECCTTTTC---------------CCBHHHHHHH-SCHHHHHHHHHHSCTTS-CEEECHH
T ss_pred HcCCCcceEEEEccEEecCCcCccccCCC---------------cccHHHHHhh-cChHHhhhhhccCCCCC-CcCcCHH
Confidence 347777889988 5789999999999998 3788898886 99999999999877754 3345555
Q ss_pred hHHHH
Q 006869 568 RLEYH 572 (628)
Q Consensus 568 ~le~~ 572 (628)
.|+++
T Consensus 311 ~l~~a 315 (462)
T 3tqo_A 311 NLENG 315 (462)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 16
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.93 E-value=3.2e-25 Score=244.10 Aligned_cols=249 Identities=14% Similarity=0.138 Sum_probs=181.1
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCcc---c----------ccHHHHHHHHHHHHHcCCCC-
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE---A----------EKKEYIDHIEEIVQWMGWEP- 340 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDtD~~---r----------~~~~~~~~I~~~L~wLGl~p- 340 (628)
.|+|+|++||||+|++++.+.+||. ++..|+.+++|+|.+ + ..+.|.+.|.++++|||+.+
T Consensus 29 gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~LgI~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 7888899999999999999999883 667999999999963 1 25688999999999999996
Q ss_pred CCccCCcccHHHHHHHHHHHHHcCCcccc------CCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeE
Q 006869 341 FKITYTSDYFQELYELAVELIRRGHAYVD------HQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKAT 414 (628)
Q Consensus 341 d~~~~qSd~~~~~~e~a~~Li~~G~AY~C------~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~ 414 (628)
|..+++|+|.+.+.+++++|+++|++|.+ +|..+ + ..|...|+. ++ ++|..|.
T Consensus 109 d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~----~--~~yg~lsg~-~~-------~~l~~g~------- 167 (461)
T 1li5_A 109 DMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT----D--PTYGVLSRQ-DL-------DQLQAGA------- 167 (461)
T ss_dssp SBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG----C--TTTTTTTTC------------------------
T ss_pred cccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc----c--cccccccCC-CH-------HHhhcCC-------
Confidence 77788999999999999999999999987 66543 1 234434432 22 2333332
Q ss_pred EEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchhhh-hhccCCcceeec--Ccccc----ccchhHHHH
Q 006869 415 LRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAHCI-VDSIENITHSLC--TLEFE----TRRASYFWL 486 (628)
Q Consensus 415 lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~~V-DD~~~~IThvir--G~e~~----~~~~~q~~L 486 (628)
|+..+ ..+.+..||++||...+.++.|.++| .++|+||++|++ .....|.++.|. |.|++ .+.+.|
T Consensus 168 -rv~~~--~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq--- 241 (461)
T 1li5_A 168 -RVDVV--DDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ--- 241 (461)
T ss_dssp ----------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH---
T ss_pred -cccch--hcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHH---
Confidence 33222 22344589999998777777788899 789999999975 344446777777 78843 222222
Q ss_pred HHH-hCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCccc
Q 006869 487 LHA-LGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLI 564 (628)
Q Consensus 487 ~~a-Lg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~ 564 (628)
..+ +|.+.|.+|.| ++++.+|.|||||.|+ ..++.++.++ |.|+++|.|+++..+.. +..+
T Consensus 242 ~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~dll~~-~g~dalR~~ll~~~~~~-~~~f 304 (461)
T 1li5_A 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGN---------------FFTVRDVLKY-YDAETVRYFLMSGHYRS-QLNY 304 (461)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTC---------------CCBHHHHHTT-SCHHHHHHHHHSSCTTS-CEEE
T ss_pred HHHhcCCCCCcEEEEeeEEEECCeEccccCCC---------------ccChhHHhhh-CCHHHHHHHHHcCCcCC-CCCC
Confidence 223 48877878877 7888899999999998 3688999987 99999999999855443 3356
Q ss_pred chhhHHHH
Q 006869 565 RLDRLEYH 572 (628)
Q Consensus 565 ~~~~le~~ 572 (628)
+...|.++
T Consensus 305 s~~~l~~~ 312 (461)
T 1li5_A 305 SEENLKQA 312 (461)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 66666654
No 17
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.89 E-value=5.9e-23 Score=226.70 Aligned_cols=255 Identities=15% Similarity=0.116 Sum_probs=159.3
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecC----------Ccc-------------cccHHHHHHHHH
Q 006869 280 PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDT----------NPE-------------AEKKEYIDHIEE 331 (628)
Q Consensus 280 aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDt----------D~~-------------r~~~~~~~~I~~ 331 (628)
.|+|+|++||||+|++++-+.++| .+...|+.+|+|+ |.+ .....|++.+.+
T Consensus 49 gPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~ 128 (501)
T 3sp1_A 49 GPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFN 128 (501)
T ss_dssp CCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHHHHHH
T ss_pred CCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 677889999999999998776666 5778899999999 432 225678999999
Q ss_pred HHHHcCCCCCC-ccCCcccHHHHHHHHHHHHHcCCccc-----cCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhc
Q 006869 332 IVQWMGWEPFK-ITYTSDYFQELYELAVELIRRGHAYV-----DHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 405 (628)
Q Consensus 332 ~L~wLGl~pd~-~~~qSd~~~~~~e~a~~Li~~G~AY~-----C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~ 405 (628)
+++.||+.++. .+..++|.+.+.++.++|+++|+||. .||... + +.|. .++.. ++ -++|..
T Consensus 129 d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~----f--~~yG----~ls~~-~~--~~~~~~ 195 (501)
T 3sp1_A 129 DCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC----F--KSYG----EMAGI-DL--IDKDMT 195 (501)
T ss_dssp HHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG----C--TTTT----TTTC------------
T ss_pred HHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc----c--CCcc----ccCCC-Ch--hhhhcc
Confidence 99999998764 55789999999999999999999994 344432 1 2233 23221 11 023444
Q ss_pred ccccCCCeEEEEEecCCCCCCCCCceEEEEE--ec-CCCCCCCCcc-cccccccchhhhh--hccC-CcceeecCccccc
Q 006869 406 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRI--KF-TPHPHAGDKW-CIYPSYDYAHCIV--DSIE-NITHSLCTLEFET 478 (628)
Q Consensus 406 G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~--~~-~~h~~~gd~~-~~~PtY~fa~~VD--D~~~-~IThvirG~e~~~ 478 (628)
|. |+.+ ...+.+..||++|+. .. ...+.|.++| .|+|+||..|++. .++. .++.-.=|.|++-
T Consensus 196 g~--------r~~~--~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLif 265 (501)
T 3sp1_A 196 LP--------RVDV--DKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIG 265 (501)
T ss_dssp ------------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTT
T ss_pred CC--------ccCc--ccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeecccccc
Confidence 42 3222 234566799999987 23 3345789999 8999999999651 2221 1111112344331
Q ss_pred cchhH-HHHH--HH-hCCCCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHH
Q 006869 479 RRASY-FWLL--HA-LGLYQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQ 553 (628)
Q Consensus 479 ~~~~q-~~L~--~a-Lg~~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~ 553 (628)
|.+ .+++ .+ .|-+.+.+|.| ++++.+|.|||||.|+ ++++..+.++||.|+++|.||+
T Consensus 266 --pHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN---------------~it~~dll~~gyg~d~lR~~ll 328 (501)
T 3sp1_A 266 --VHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGN---------------FITVKDLEDQNFSPLDFRYLCL 328 (501)
T ss_dssp --THHHHHHHHHHHHHTSCCCSEEEEECCEECC-------------------------CCCHHHHHHTTCCHHHHHHHHH
T ss_pred --chHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCC---------------cCCHHHHHhcCCCHHHHHHHHH
Confidence 111 2232 33 35567789988 8899999999999998 4789999999999999999999
Q ss_pred HcCCCCCCcccchhhHHHHHHh
Q 006869 554 GIGISRSDSLIRLDRLEYHIRE 575 (628)
Q Consensus 554 ~lG~t~~~~~~~~~~le~~ir~ 575 (628)
+..+.. +..++...|+++.+.
T Consensus 329 s~~yr~-~l~fs~~~l~~a~~~ 349 (501)
T 3sp1_A 329 TSHYRN-QLKFSLDNLQASKIA 349 (501)
T ss_dssp TSCTTS-CEECCHHHHHHHHHH
T ss_pred hccCCC-CCccCHHHHHHHHHh
Confidence 877764 334565666665444
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.89 E-value=8e-23 Score=222.20 Aligned_cols=258 Identities=15% Similarity=0.094 Sum_probs=169.0
Q ss_pred EeCCCCCCcCchhHHHHHHHHHHHHHH-----cCCEEEEeeecCCcc-------------cccHHHHHHHHHHHHHcCCC
Q 006869 278 RFPPEPNGYLHIGHAKAMFVDFGLAKE-----RGGYCYLRYDDTNPE-------------AEKKEYIDHIEEIVQWMGWE 339 (628)
Q Consensus 278 RFaPsPtG~LHIGharaal~n~l~Ar~-----~~G~~iLRidDtD~~-------------r~~~~~~~~I~~~L~wLGl~ 339 (628)
-..|+|+|++||||+|++++.+.+||. ++..|+..+||.|.. .....+.+.|.+++++||+.
T Consensus 44 ~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~ 123 (414)
T 3c8z_A 44 VCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALRVL 123 (414)
T ss_dssp ECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 448999999999999999998888884 778899999999853 22567888999999999998
Q ss_pred -CCCccCCcccHHHHHHHHHHHHHcCCccccCCCHH--HHHHHhhccCCCCCCC---CCHHHHhHHHHHhhccccc-CCC
Q 006869 340 -PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPE--EIKEYREKKMNSPWRD---RPIAESLKLFEDMRNGRIE-EGK 412 (628)
Q Consensus 340 -pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~e--ei~~~r~~~y~~~~R~---~~~ee~l~~f~~m~~G~~~-~g~ 412 (628)
+|..++.|+|.+.+.+..++|+++|++|.+.+..+ -.. +-..+.. |.. ...++ |..+... .++
T Consensus 124 ~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f--~~~~~~~-~g~l~~~~~~~-------~~~~~~~~~~~ 193 (414)
T 3c8z_A 124 PPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYF--RADATAQ-FGYESGYDRDT-------MLTLFAERGGD 193 (414)
T ss_dssp CCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEE--CTTSSTT-TTTTTCCCHHH-------HHHHHHHTTCC
T ss_pred CCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEE--Echhhhh-hHhhcCCCHHH-------HHHHHhhcccc
Confidence 78777888999999999999999999998775310 000 0011111 111 22222 2221000 011
Q ss_pred eEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcc-cccccccchh----------hhhhccCCcceeecCccccccch
Q 006869 413 ATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH----------CIVDSIENITHSLCTLEFETRRA 481 (628)
Q Consensus 413 ~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~-~~~PtY~fa~----------~VDD~~~~IThvirG~e~~~~~~ 481 (628)
. + ...+.+..|+++|++..+.++.|.++| .|+|.||+.| .+|.|.+|++|++- |..+.+
T Consensus 194 ~------~-~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~---H~~~~~ 263 (414)
T 3c8z_A 194 P------D-RPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFP---HHEYSA 263 (414)
T ss_dssp T------T-CTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTT---HHHHHH
T ss_pred c------c-ccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccH---HHHHHH
Confidence 0 0 123345689999999777777787788 6899999987 45666666666542 333333
Q ss_pred hHHHHHHHh-CC-CCCceeee-eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCC
Q 006869 482 SYFWLLHAL-GL-YQPYVWEY-SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGIS 558 (628)
Q Consensus 482 ~q~~L~~aL-g~-~~P~~~~~-~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t 558 (628)
.| ..++ |. ..+.+|-| ++++.+|.|||||+|+ ..++.++.++||.|+++|.||++..+
T Consensus 264 a~---~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN---------------~v~~~~ll~~g~g~D~lR~~ll~~~~- 324 (414)
T 3c8z_A 264 AH---AESVTGERRFARHYVHTGMIGWDGHKMSKSRGN---------------LVLVSQLRAQGVDPSAIRLGLFSGHY- 324 (414)
T ss_dssp HH---HHHHHCCSCSEEEEEEECCBC----------------------------CBHHHHHHTTCCHHHHHHHHHTSCT-
T ss_pred HH---HHHhcCCCCcCeEEEEcCEEecCCeEcccccCC---------------cCCHHHHhhccCCcchheeEEEecCc-
Confidence 22 2344 76 34456777 7899999999999998 47899999999999999999998443
Q ss_pred CCCcccchhhHHHHHH
Q 006869 559 RSDSLIRLDRLEYHIR 574 (628)
Q Consensus 559 ~~~~~~~~~~le~~ir 574 (628)
..+..++...+.+..+
T Consensus 325 ~~d~~fs~~~l~~~~~ 340 (414)
T 3c8z_A 325 REDRFWSNEVLDEANA 340 (414)
T ss_dssp TSCBCCCHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHH
Confidence 3344566676766544
No 19
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.83 E-value=2.8e-20 Score=206.18 Aligned_cols=266 Identities=15% Similarity=0.091 Sum_probs=171.4
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------cccccHHHHHHHHHHHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQW 335 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD----------------~~r~~~~~~~~I~~~L~w 335 (628)
-+++.-+|.|||++||||+|++++.+.+||. ..|..++++.++| +....+++.+.|.++++|
T Consensus 7 ~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 86 (497)
T 2csx_A 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEF 86 (497)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3788889999999999999999999999994 5999999999998 666778899999999999
Q ss_pred cCCCCCCccCCcc--cHHHHHHHHHHHHHcCCcccc-----CCCHHHHHHHhhccCC-CCCC--CCCHHHHhHHHHHhhc
Q 006869 336 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMN-SPWR--DRPIAESLKLFEDMRN 405 (628)
Q Consensus 336 LGl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~C-----~cs~eei~~~r~~~y~-~~~R--~~~~ee~l~~f~~m~~ 405 (628)
||+.+|..+++|+ |.+.+.+..++|+++|++|.| .|...+..-......+ +.|. ..+++. +.
T Consensus 87 lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-------~~- 158 (497)
T 2csx_A 87 LKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEY-------IK- 158 (497)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC----------------------------------------C-
T ss_pred hCCcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeE-------Ee-
Confidence 9999998777888 888899999999999999988 4655432211000000 1221 111110 00
Q ss_pred ccccCCCeEEEEEecC-------------C--CC-----------CCCCCceEEEEEecCCCCCCCCcccccc---cccc
Q 006869 406 GRIEEGKATLRMKQDM-------------Q--ND-----------NFNMYDLIAYRIKFTPHPHAGDKWCIYP---SYDY 456 (628)
Q Consensus 406 G~~~~g~~~lRlk~d~-------------~--~~-----------~~~~~D~Vl~R~~~~~h~~~gd~~~~~P---tY~f 456 (628)
...+.++++. . .+ +..+.|+.+-|.... .-|| ...| +|++
T Consensus 159 ------~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~--~~WG---~~iP~~~~~~i 227 (497)
T 2csx_A 159 ------EPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSR--VKWG---IPVPFDPEHTI 227 (497)
T ss_dssp ------CEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTT--CCSS---EEETTEEEEEE
T ss_pred ------cCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCC--CCCc---eecCCCCCceE
Confidence 1122222210 0 00 023578888883211 0133 2234 5553
Q ss_pred ----------hhhhhh---ccCCcceeecCccccc-cchhHHHHHHHhCCCCCc-eeeeeeecCCCcccccccccccccc
Q 006869 457 ----------AHCIVD---SIENITHSLCTLEFET-RRASYFWLLHALGLYQPY-VWEYSRLNVSNTVMSKRKLNFLVTN 521 (628)
Q Consensus 457 ----------a~~VDD---~~~~IThvirG~e~~~-~~~~q~~L~~aLg~~~P~-~~~~~~Ln~~g~KLSKR~~~~lv~~ 521 (628)
.+++.| ..-.+++.+.|.|++. +..-......++|...|. +++++++..+|+|||||+|+.
T Consensus 228 ~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KMSKS~GN~---- 303 (497)
T 2csx_A 228 YVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKMSKTLGNV---- 303 (497)
T ss_dssp CSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBCCTTTTCC----
T ss_pred EEecccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCceeCCcCCCC----
Confidence 444444 2236777778888765 111101123577887776 556788888999999999983
Q ss_pred cccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHH
Q 006869 522 KYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 522 ~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
.++..+.+. |.++++|.|++..+-...+..++...+.+.++
T Consensus 304 -----------i~~~dli~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~ 344 (497)
T 2csx_A 304 -----------VDPYEVVQE-YGLDEVRYFLLREVPFGQDGDFSKKAILNRIN 344 (497)
T ss_dssp -----------CCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHHHHH
T ss_pred -----------CCHHHHHHH-CCcHHHHHHHHhcCCcccCCCCChHHHHHHHH
Confidence 567787775 99999999999865444455666666666544
No 20
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.77 E-value=2.8e-18 Score=189.98 Aligned_cols=276 Identities=16% Similarity=0.089 Sum_probs=168.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC----------------cccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD----------------~~r~~~~~~~~I~~~L~wL 336 (628)
+++--+|.|||++||||+|++++.+.+|| ...|..++++.++| +....+++.+.|.+++++|
T Consensus 6 ~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 85 (500)
T 2d5b_A 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLL 85 (500)
T ss_dssp EEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666789999999999999999999999 45999999999998 5556778899999999999
Q ss_pred CCCCCCccCCcc--cHHHHHHHHHHHHHcCCccccC-----CCHHHHHHHhhccCCCCCC--CCCHHH--------HhHH
Q 006869 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVDH-----QTPEEIKEYREKKMNSPWR--DRPIAE--------SLKL 399 (628)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~C~-----cs~eei~~~r~~~y~~~~R--~~~~ee--------~l~~ 399 (628)
|+.+|..+++++ |.+.+.+..++|.++|++|.+. |...+-.-.......+.|. ..+++. .+..
T Consensus 86 gi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~ 165 (500)
T 2d5b_A 86 GIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEK 165 (500)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGG
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHH
Confidence 999997777787 8888889999999999999772 2211100000000011121 111100 0000
Q ss_pred HHHhhcccccCCC-eEEE--EEecC-CCCCCCCCceEEEEEecCCCCCCCCcccccc---------------------cc
Q 006869 400 FEDMRNGRIEEGK-ATLR--MKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDKWCIYP---------------------SY 454 (628)
Q Consensus 400 f~~m~~G~~~~g~-~~lR--lk~d~-~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~P---------------------tY 454 (628)
|.+.....+++++ .+.- .+... ..-...+.|+.+-|.... ..||- ..| .|
T Consensus 166 ~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~--~~WG~---piP~~~~~v~~vWfds~~~y~~~~g~ 240 (500)
T 2d5b_A 166 YRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSR--VPWGI---PLPWDENHVTFVWFDALLNYVSALDY 240 (500)
T ss_dssp GHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTT--CCSSC---EETTEEEEEECHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeeccccccc--ccCcc---ccCCCCCCeeEEccccchhhHHHcCC
Confidence 0000000000000 0000 00000 000123578888883111 01342 223 35
Q ss_pred cchhhhhhccCCcceeecCccccccchhH-HH--HHHHhCCCCCc-eeeeeeecC-CCcccccccccccccccccCCCCC
Q 006869 455 DYAHCIVDSIENITHSLCTLEFETRRASY-FW--LLHALGLYQPY-VWEYSRLNV-SNTVMSKRKLNFLVTNKYVDGWDD 529 (628)
Q Consensus 455 ~fa~~VDD~~~~IThvirG~e~~~~~~~q-~~--L~~aLg~~~P~-~~~~~~Ln~-~g~KLSKR~~~~lv~~~~v~~wdd 529 (628)
+..|..+++. +.+..+.|.|++. +.+ .| +..++|+..|. +++++++.. +|+|||||+|+.
T Consensus 241 ~~~~~~~~~~-p~di~~~G~D~~~--fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN~------------ 305 (500)
T 2d5b_A 241 PEGEAYRTFW-PHAWHLIGKDILK--PHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNV------------ 305 (500)
T ss_dssp TTCHHHHHHG-GGEEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTCC------------
T ss_pred CCCchHHHcC-CCeEEEEeechhh--hHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCCC------------
Confidence 5444333333 4566677888765 222 22 33577887777 456788877 999999999983
Q ss_pred cchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHH
Q 006869 530 PCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 530 Pr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
.++..+.+. |.++++|.|+++.+-...+..++.+.+.+.+.
T Consensus 306 ---i~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~ 346 (500)
T 2d5b_A 306 ---VDPFALLEK-YGRDALRYYLLREIPYGQDTPVSEEALRTRYE 346 (500)
T ss_dssp ---CCHHHHHHH-HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHH
T ss_pred ---CCHHHHHHh-cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHH
Confidence 567777775 99999999999855444455566666666543
No 21
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.73 E-value=1e-17 Score=189.77 Aligned_cols=296 Identities=15% Similarity=0.083 Sum_probs=181.5
Q ss_pred CCccccccCcHHHHHHhhhh---cC---CeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCc
Q 006869 251 DGSVLICCNTKEVLDKHLEV---TG---GNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNP 318 (628)
Q Consensus 251 ~~~~~~~~~~~~~~~~h~~~---~~---~~v~tRF-aPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~ 318 (628)
+|++...-+...+...-+.. .+ |+|+.=| .|+|||++||||+|++++...+|| .|+..++-.|.|.+.
T Consensus 75 ggfiN~~l~~~~~~~~~~~~~~~~~~~~g~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~ 154 (592)
T 1iq0_A 75 GGYLNFRLRTEALLREALRPKAPFPRRPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGR 154 (592)
T ss_dssp TTEEEEEECHHHHHHHHHSCCCCCCCEEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSH
T ss_pred CCEEEEEECHHHHHHHHHHHHHhcCcccCeEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcch
Confidence 45555555554444443333 12 2566666 899999999999999999888888 344455555667641
Q ss_pred ----------------------------------------------------------ccccHHHHHHHHHHHHHcCCCC
Q 006869 319 ----------------------------------------------------------EAEKKEYIDHIEEIVQWMGWEP 340 (628)
Q Consensus 319 ----------------------------------------------------------~r~~~~~~~~I~~~L~wLGl~p 340 (628)
.+..+.+.+.|.++++|||+.+
T Consensus 155 q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI~~ 234 (592)
T 1iq0_A 155 QAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY 234 (592)
T ss_dssp HHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCCEe
Confidence 1223456778899999999999
Q ss_pred CCccCCccc--HHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCC-CCCCCHHHHhHHHHHhhcccccC-CCeEEE
Q 006869 341 FKITYTSDY--FQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSP-WRDRPIAESLKLFEDMRNGRIEE-GKATLR 416 (628)
Q Consensus 341 d~~~~qSd~--~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~-~R~~~~ee~l~~f~~m~~G~~~~-g~~~lR 416 (628)
|.....|++ .+.+.+..++|.++|++|.|.-. .+++. |-..+. | |.-.+ +..+++
T Consensus 235 D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g----------~~~G~~~~~~~~------~-----g~~~~l~~~vi~ 293 (592)
T 1iq0_A 235 DLLVWESDIVRAGLLQKALALLEQSPHVFRPREG----------KYAGALVMDASP------V-----IPGLEDPFFVLL 293 (592)
T ss_dssp SEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSS----------TTTTCEEEECTT------T-----SCSCSCCEEEEE
T ss_pred EEeccCCcccccchHHHHHHHHHHCCCcccCccc----------CcCCCEEEechh------c-----CCCCCCCceEEE
Confidence 887677777 55677889999999999987211 12211 111100 0 10000 112222
Q ss_pred EEecCCCCCCCCCce--EEE--------EEecCCCCCCCCcccccccccchhhhhhccCCccee--ecCccccccchhHH
Q 006869 417 MKQDMQNDNFNMYDL--IAY--------RIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHS--LCTLEFETRRASYF 484 (628)
Q Consensus 417 lk~d~~~~~~~~~D~--Vl~--------R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThv--irG~e~~~~~~~q~ 484 (628)
|.+- .......|+ ++| |... .+.++| +.|.|+..| +.-...+.+|+ |+|.+|..+.+.+.
T Consensus 294 -ksdG-~~~Y~~~D~a~~~~Kl~l~~~~~~~~----~~~~p~-~r~~w~~~g-~~~~~~~~~~~iyV~g~~h~~~~~~~~ 365 (592)
T 1iq0_A 294 -RSNG-TATYYAKDIAFQFWKMGILEGLRFRP----YENPYY-PGLRTSAPE-GEAYTPKAEETINVVDVRQSHPQALVR 365 (592)
T ss_dssp -CTTS-CBCHHHHHHHHHHHHTTSSCCCEEEE----CCCSSC-TTCEEEEEE-EEECCCCCSEEEEEEESSSCCCHHHHH
T ss_pred -ecCC-ceEEecchHHHHHHHhhhhhhhhhhh----hhcCcc-hhhcccccC-cccCCCCCCEEEEEEeccHHHHHHHHH
Confidence 2210 111223343 334 3321 012233 256666443 33333467787 69999999999998
Q ss_pred HHHHHhCCCC-Ccee-ee--eeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCC
Q 006869 485 WLLHALGLYQ-PYVW-EY--SRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRS 560 (628)
Q Consensus 485 ~L~~aLg~~~-P~~~-~~--~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~ 560 (628)
.+++++|+.. +..| |+ ++++.+|.|||||+|+. .++.+|+++|+ +++.+++...+...+
T Consensus 366 ~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~---------------v~l~dll~~~~--~~~~~~~~~~~~~~~ 428 (592)
T 1iq0_A 366 AALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLA---------------VSVDEVLEEAT--RRARAIVEEKNPDHP 428 (592)
T ss_dssp HHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----C---------------CBHHHHHHHHH--HHHHHHHHHHCTTCS
T ss_pred HHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCc---------------cCHHHHHHHHH--HHHHHHHHhhCCCCC
Confidence 9999999865 3344 54 45888999999999983 68999999887 677788877765432
Q ss_pred CcccchhhHH-----HHHHhhhccCCCCcceeeccceeEEe
Q 006869 561 DSLIRLDRLE-----YHIREELNKTAPRTMVVLNPLKVVIT 596 (628)
Q Consensus 561 ~~~~~~~~le-----~~ir~~~~~~~~r~~~v~dp~kl~i~ 596 (628)
+. +.+. .++|-|+....++....||..++...
T Consensus 429 ~~----e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~ 465 (592)
T 1iq0_A 429 DK----EEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSF 465 (592)
T ss_dssp CH----HHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCS
T ss_pred cH----HHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHH
Confidence 22 1233 37888888888888888888776443
No 22
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.9e-17 Score=175.65 Aligned_cols=194 Identities=13% Similarity=0.081 Sum_probs=138.4
Q ss_pred HHHHHHhhhhcCC--eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----CCccccc--------HHHH
Q 006869 261 KEVLDKHLEVTGG--NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPEAEK--------KEYI 326 (628)
Q Consensus 261 ~~~~~~h~~~~~~--~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----tD~~r~~--------~~~~ 326 (628)
++.|++.|+..+. .|.++|.| ||.|||||++.++.+|.+++ .|+.++++|.| |+..+.. ..+.
T Consensus 26 ~e~L~~~L~~~~~p~~vy~G~~P--TG~LHlG~~~~al~~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~ 102 (394)
T 2dlc_X 26 PQIIKDVLEVQKRHLKLYWGTAP--TGRPHCGYFVPMTKLADFLK-AGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYE 102 (394)
T ss_dssp HHHHHHHHHTSCSCCEEEEEECC--CSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCeEEEEEeCC--CCCccHHHHHHHHHHHHHHH-cCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHH
Confidence 6778888887444 48899988 79999999999999999998 89999999999 7532221 1244
Q ss_pred HHHHHHHHHcCCCCCC--ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhh
Q 006869 327 DHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMR 404 (628)
Q Consensus 327 ~~I~~~L~wLGl~pd~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~ 404 (628)
..|...+.|+|++|++ +.+||+++. +.+++..++ .|.|+||..++..... + +
T Consensus 103 ~~i~~~l~a~Gldp~k~~i~~qS~~~~-~~~~~~~~~----~l~~~~t~~~l~r~~~-------------~-------~- 156 (394)
T 2dlc_X 103 LTIKAILRSINVPIEKLKFVVGSSYQL-TPDYTMDIF----RLSNIVSQNDAKRAGA-------------D-------V- 156 (394)
T ss_dssp HHHHHHHHHTTCCCTTCEEEETHHHHT-SHHHHHHHH----HHHTTSCHHHHHHHTT-------------T-------T-
T ss_pred HHHHHHHHHcCCChhHcEEEeCchhcc-hHHHHHHHH----HHhCcCcHHHHhcccH-------------h-------h-
Confidence 6777789999999987 789999863 223444444 7899999988764310 0 0
Q ss_pred cccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHH
Q 006869 405 NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYF 484 (628)
Q Consensus 405 ~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~ 484 (628)
.|.. + + .-.+..+|..--+.|..+++++|+++|.|...+...+.
T Consensus 157 ----------~r~~-----------~--------------~-~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~r 200 (394)
T 2dlc_X 157 ----------VKQV-----------A--------------N-PLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAE 200 (394)
T ss_dssp ----------SCCC-----------S--------------S-CCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHH
T ss_pred ----------hccc-----------C--------------C-ccceeeechhHhhccHhhhCCCEEecCccHHHHHHHHH
Confidence 0000 0 0 00136677777778888899999999999999999999
Q ss_pred HHHHHhCCCCCceeeeeee-cCC-Ccccccccccccc
Q 006869 485 WLLHALGLYQPYVWEYSRL-NVS-NTVMSKRKLNFLV 519 (628)
Q Consensus 485 ~L~~aLg~~~P~~~~~~~L-n~~-g~KLSKR~~~~lv 519 (628)
.|++.+|+..|...+++++ +.+ |+|||||.++..|
T Consensus 201 dl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns~I 237 (394)
T 2dlc_X 201 ENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKI 237 (394)
T ss_dssp HHGGGGTCCCCEEEEECCCCCCC----------CCSC
T ss_pred HHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCCEE
Confidence 9999999989988888874 677 9999999987433
No 23
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.60 E-value=1.9e-14 Score=161.00 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=80.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCc-------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~-------------~r~~~~~~~~I~~~L~wL 336 (628)
++|.-.|.|||++||||+|++++.+.+|| .++..|+..+||.+. ......+.+.|.+++++|
T Consensus 28 ~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 107 (536)
T 4dlp_A 28 YITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVL 107 (536)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 78888899999999999999999988888 355668888888653 345678899999999999
Q ss_pred CCCCCCccCCcc--cHHHHHHHHHHHHHcCCcccc
Q 006869 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD 369 (628)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~C 369 (628)
|+.+|..++.++ |.+.+.+..++|+++|++|.+
T Consensus 108 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~ 142 (536)
T 4dlp_A 108 NSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKG 142 (536)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999997655555 888888999999999999965
No 24
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.59 E-value=4.8e-14 Score=158.53 Aligned_cols=279 Identities=13% Similarity=0.041 Sum_probs=155.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEeeecCC-------------cccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDTN-------------PEAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G---~~iLRidDtD-------------~~r~~~~~~~~I~~~L~wL 336 (628)
+++--+|.|||++||||+|++++.+.+|| ...| .|+..+||.+ +....+.+.+.|.+++++|
T Consensus 21 ~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 100 (560)
T 3h99_A 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGF 100 (560)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHc
Confidence 67788899999999999999999999988 3445 4555555443 4456778899999999999
Q ss_pred CCCCCCccCCc--ccHHHHHHHHHHHHHcCCcc-------ccCCCHHHHHHH--hh--c------cCCCC---CCC-CCH
Q 006869 337 GWEPFKITYTS--DYFQELYELAVELIRRGHAY-------VDHQTPEEIKEY--RE--K------KMNSP---WRD-RPI 393 (628)
Q Consensus 337 Gl~pd~~~~qS--d~~~~~~e~a~~Li~~G~AY-------~C~cs~eei~~~--r~--~------~y~~~---~R~-~~~ 393 (628)
|+.+|..++.+ .|.+...+...+|.++|.+| .|-....-+... .+ + .+... |.. ...
T Consensus 101 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~ 180 (560)
T 3h99_A 101 NISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSP 180 (560)
T ss_dssp TCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCG
T ss_pred CCCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhccccCCh
Confidence 99998754444 45555567788999999999 332111000000 00 0 00000 110 000
Q ss_pred HHHhHHHHHhhcccccC--CCeEEEEEecCC---------C--------------CCCCCCceEEEEEecC-CCCCCCCc
Q 006869 394 AESLKLFEDMRNGRIEE--GKATLRMKQDMQ---------N--------------DNFNMYDLIAYRIKFT-PHPHAGDK 447 (628)
Q Consensus 394 ee~l~~f~~m~~G~~~~--g~~~lRlk~d~~---------~--------------~~~~~~D~Vl~R~~~~-~h~~~gd~ 447 (628)
.+ +..-...+.|..-+ .+..+.|+++.- . -...+.|+.+-|.... .++.-+++
T Consensus 181 ~~-l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~ 259 (560)
T 3h99_A 181 TE-LIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAP 259 (560)
T ss_dssp GG-CEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCT
T ss_pred hh-hcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCC
Confidence 00 00000000000000 011222222100 0 0014678888886421 11111110
Q ss_pred cccccccc-----chhhh------------------hhccCCcceeecCccccc-cchhHHHHHHHhCCCCCce-eeeee
Q 006869 448 WCIYPSYD-----YAHCI------------------VDSIENITHSLCTLEFET-RRASYFWLLHALGLYQPYV-WEYSR 502 (628)
Q Consensus 448 ~~~~PtY~-----fa~~V------------------DD~~~~IThvirG~e~~~-~~~~q~~L~~aLg~~~P~~-~~~~~ 502 (628)
=..+.+|. |..++ .|....+.|++ |.|++. +...+..++.++|+..|.. +.|++
T Consensus 260 ~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~-G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~ 338 (560)
T 3h99_A 260 GKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFI-GKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGY 338 (560)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEE-EGGGHHHHHTHHHHHHHHTTBCCCSEEEEECC
T ss_pred CceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEe-ccccchhHHHHHHHHHHhCCCCCCcEEEEEeE
Confidence 00001111 10111 23334456776 888764 2222224667889877743 44677
Q ss_pred ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCC-CCcccchhhHHH
Q 006869 503 LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISR-SDSLIRLDRLEY 571 (628)
Q Consensus 503 Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~-~~~~~~~~~le~ 571 (628)
+..+|.|||||+|+. .++..+.++ |.++++|.|++..+-.. .+..+++..+.+
T Consensus 339 v~~~G~KMSKS~GNv---------------v~p~d~i~~-~GaDalR~~ll~~~~~~~~d~~f~~~~~~~ 392 (560)
T 3h99_A 339 VTVNGAKMSKSRGTF---------------IKASTWLNH-FDADSLRYYYTAKLSSRIDDIDLNLEDFVQ 392 (560)
T ss_dssp EEETTEECCTTTTCC---------------CBHHHHHHH-SCHHHHHHHHHHHCCSSCCCEEECHHHHHH
T ss_pred EEeCCeeccccCCCc---------------CCHHHHHHH-cCcHHHHHHHHHhCCCCCCCCCcCHHHHHH
Confidence 778999999999983 678888888 99999999999865533 444566665543
No 25
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.56 E-value=2.6e-14 Score=157.33 Aligned_cols=243 Identities=16% Similarity=0.202 Sum_probs=161.8
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc-ccccHHHHHHHH-HHHH-HcCCCC--CCc
Q 006869 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP-EAEKKEYIDHIE-EIVQ-WMGWEP--FKI 343 (628)
Q Consensus 272 ~~~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~-~r~~~~~~~~I~-~~L~-wLGl~p--d~~ 343 (628)
+.+|++=| +|+|||+||+||+|++++.+.+|| ...|.=++|.--+|. .++..-...++. ...+ ++|... .+-
T Consensus 29 ~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~ 108 (464)
T 3fnr_A 29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQ 108 (464)
T ss_dssp SCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSS
T ss_pred CCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchh
Confidence 56799999 899999999999999999999999 567888999888854 566555555553 3455 556542 223
Q ss_pred cCCcccHHHHHHHHHHHHHc-CCccccCCCHHHHHHHhh--------------c----cCC------CCCCCCCHHHHhH
Q 006869 344 TYTSDYFQELYELAVELIRR-GHAYVDHQTPEEIKEYRE--------------K----KMN------SPWRDRPIAESLK 398 (628)
Q Consensus 344 ~~qSd~~~~~~e~a~~Li~~-G~AY~C~cs~eei~~~r~--------------~----~y~------~~~R~~~~ee~l~ 398 (628)
.|+.+++ .+.|+++.++ +..|.- .++....+. . .++ +-+. ..++.
T Consensus 109 ~y~g~~~---~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~~~--~~~~v-- 178 (464)
T 3fnr_A 109 YYKGEYI---VDLAKEAFEKFGKEFFS---EENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD--ALNAT-- 178 (464)
T ss_dssp CCCSHHH---HHHHHHHHHHHCGGGCS---GGGHHHHHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGGST--THHHH--
T ss_pred hcCccHH---HHHHHHHHHhcchhhcC---cHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeecCHHHHHH--HHHHH--
Confidence 4555543 4566666655 444422 122111111 0 122 1122 34443
Q ss_pred HHHHhh-cccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCccccccccc---chhhhhhccCCccee--ec
Q 006869 399 LFEDMR-NGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYD---YAHCIVDSIENITHS--LC 472 (628)
Q Consensus 399 ~f~~m~-~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~---fa~~VDD~~~~IThv--ir 472 (628)
.+.++ .|...+.+.++.++.+. .+. -.|.|+.|. +| .|||. +|..+++..++++++ |+
T Consensus 179 -v~~L~~~g~~~e~dGa~~~~~~~-~g~--~~~~vl~ks-------DG-----~~~Y~t~DiA~~~~r~~~~~d~~Iyv~ 242 (464)
T 3fnr_A 179 -LESLKEHKGIYEQEGKIWLASSQ-KGD--EKDRVIIRE-------DG-----RGTYLAADIVYHKDKMSRGYGKCINIW 242 (464)
T ss_dssp -HHHHHHTTCEEEETTEEEECGGG-GTC--SSCEEEECT-------TS-----CBCHHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred -HHHHHHCCCEEEeCCeEEEEecc-cCC--CCceEEEeC-------CC-----ceehhhHHHHHHHHHHHcCCCeEEEEe
Confidence 34444 56666666677777642 222 157888776 55 88887 678899999999999 59
Q ss_pred CccccccchhHHHHHHHhCCCCCceee--eeeec--CCCc--ccccccccccccccccCCCCCcchhhHHHHHHcCCCHH
Q 006869 473 TLEFETRRASYFWLLHALGLYQPYVWE--YSRLN--VSNT--VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTST 546 (628)
Q Consensus 473 G~e~~~~~~~q~~L~~aLg~~~P~~~~--~~~Ln--~~g~--KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~pe 546 (628)
|.|+..+.+++..+++++|+..+.+-| |+.++ .+|. |||||+|+. .++.++.+. +.++
T Consensus 243 G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~---------------v~l~dll~~-~g~d 306 (464)
T 3fnr_A 243 GADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNF---------------ILMSDVVDE-IGSD 306 (464)
T ss_dssp EGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSS---------------CBHHHHHHH-HCHH
T ss_pred cCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCC---------------CCHHHHHhh-ccHH
Confidence 999999999888889999987665433 34543 4775 999999983 578888877 8899
Q ss_pred HHHHHHHHcC
Q 006869 547 SINAFVQGIG 556 (628)
Q Consensus 547 aI~~fl~~lG 556 (628)
+++.|+++-.
T Consensus 307 alRy~~l~~~ 316 (464)
T 3fnr_A 307 ALRYIFLSKK 316 (464)
T ss_dssp HHHHHTTSSC
T ss_pred HHHHHHHhcC
Confidence 9999887643
No 26
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.55 E-value=3.3e-14 Score=158.41 Aligned_cols=274 Identities=18% Similarity=0.178 Sum_probs=157.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC----------------cccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN----------------PEAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD----------------~~r~~~~~~~~I~~~L~wL 336 (628)
+++=-.|.|||.+||||+|++++.+.+|| ...|.-++++.++| +.....++.+.|.+++++|
T Consensus 15 ~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l 94 (524)
T 2x1l_A 15 YITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKL 94 (524)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 34556799999999999999999999999 46888888888888 3333567889999999999
Q ss_pred CCCCCCccCCcc--cHHHHHHHHHHHHHcCCcccc-----CCCHHHH-HHHhhccC-----CCCCCC-CCHHHH------
Q 006869 337 GWEPFKITYTSD--YFQELYELAVELIRRGHAYVD-----HQTPEEI-KEYREKKM-----NSPWRD-RPIAES------ 396 (628)
Q Consensus 337 Gl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~C-----~cs~eei-~~~r~~~y-----~~~~R~-~~~ee~------ 396 (628)
|+.+|..++.|+ |.+.+.+..++|.++|.+|.. +|...+- -..++-.+ .|+.|. .+++..
T Consensus 95 gi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF 174 (524)
T 2x1l_A 95 NISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYF 174 (524)
T ss_dssp TCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEE
T ss_pred CCcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeE
Confidence 999997777787 888888999999999999943 3432210 00000000 011011 111100
Q ss_pred --hHHHHHhhcccccCCCeEEE---EEecC-CCCCCCCCceEEEEEecCCCCCCCCc-----------c----------c
Q 006869 397 --LKLFEDMRNGRIEEGKATLR---MKQDM-QNDNFNMYDLIAYRIKFTPHPHAGDK-----------W----------C 449 (628)
Q Consensus 397 --l~~f~~m~~G~~~~g~~~lR---lk~d~-~~~~~~~~D~Vl~R~~~~~h~~~gd~-----------~----------~ 449 (628)
+..|.+.....++.++..+. .+..+ ..-...+.|+.+-|.... ||-+ | .
T Consensus 175 ~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~----WG~~iP~~~~~~~yvWfds~~~~~~~~ 250 (524)
T 2x1l_A 175 FRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFD----WGVPVPDHPDHVMYVWVDALTNYLTGV 250 (524)
T ss_dssp ECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCC----SSCEETTEEEEEECHHHHHHTHHHHTT
T ss_pred eeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCC----cCccCCCCCCCEEEEecCCchHHHHHc
Confidence 00010000000001100000 00000 000123578888774210 2211 2 0
Q ss_pred ccccccchhh--hhhccCCcceeecCccccccchhH-HH--HHHHhCCCCC-ceeeeeeecCCCcccccccccccccccc
Q 006869 450 IYPSYDYAHC--IVDSIENITHSLCTLEFETRRASY-FW--LLHALGLYQP-YVWEYSRLNVSNTVMSKRKLNFLVTNKY 523 (628)
Q Consensus 450 ~~PtY~fa~~--VDD~~~~IThvirG~e~~~~~~~q-~~--L~~aLg~~~P-~~~~~~~Ln~~g~KLSKR~~~~lv~~~~ 523 (628)
++|. .+. ... .-.++.-+-|.|++- +.+ .| .+.++|+..| .+|.|+++..+|.|||||+|+.
T Consensus 251 g~p~---~~~~~~~~-~~p~di~~~G~D~~~--fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN~------ 318 (524)
T 2x1l_A 251 GFPD---TESESFRR-YWPADLHMIGKDIIR--FHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNV------ 318 (524)
T ss_dssp TTTC---TTSHHHHH-HCSCSEEEEEGGGHH--HHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEES------
T ss_pred CCCC---CchHHHHh-hCCCeEEEEeechhH--hHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCCC------
Confidence 1221 000 000 011222233444431 111 12 2345687665 5788899888999999999983
Q ss_pred cCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHH
Q 006869 524 VDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 524 v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
.++.++.+. |.++++|.|++..+-...+..++.+.+.+...
T Consensus 319 ---------v~p~d~i~~-~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~ 359 (524)
T 2x1l_A 319 ---------VDPVNLVDT-FGLDQVRYFLLREVPFGQDGSYNEDAIIGRVN 359 (524)
T ss_dssp ---------SCHHHHHHH-HCHHHHHHHHHHHSCTTSCEEECHHHHHHHHH
T ss_pred ---------CCHHHHHHH-cChHHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 677888876 99999999999854434455566666666544
No 27
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=99.48 E-value=3.6e-13 Score=144.47 Aligned_cols=195 Identities=14% Similarity=0.076 Sum_probs=135.4
Q ss_pred cHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----CC-cc------cccHHHHHH
Q 006869 260 TKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TN-PE------AEKKEYIDH 328 (628)
Q Consensus 260 ~~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----tD-~~------r~~~~~~~~ 328 (628)
+.+-|++.|+...-.|.++|. |||.|||||+..++.+|.+.+ .|+.+++.|.| |+ |. +.+..|.+.
T Consensus 23 ~~~~L~~~L~~~~~~vy~G~~--PTG~lHlG~~~~~l~~~~~~q-~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~ 99 (372)
T 1n3l_A 23 GEEKLKEILKERELKIYWGTA--TTGKPHVAYFVPMSKIADFLK-AGCEVTILFADLHAYLDNMKAPWELLELRVSYYEN 99 (372)
T ss_dssp CHHHHHHHHTTSCCEEEEEEC--CSSCCBGGGHHHHHHHHHHHH-TTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCEEEeCcC--CCCcccHHHHHHHHHHHHHHH-CCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHH
Confidence 356688888765557889999 579999999999999999987 79999999999 75 32 234455565
Q ss_pred -HHHHHHHcCCCCCC--ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhc
Q 006869 329 -IEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRN 405 (628)
Q Consensus 329 -I~~~L~wLGl~pd~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~ 405 (628)
|...+.|+|++|++ +.+||+.. .+-+++..++. |.|+||..+++.... +.
T Consensus 100 ~i~~~lla~Gldp~k~~i~~qS~~~-~~~~~~~~~~~----l~~~~t~~~~~~~~~-------------~v--------- 152 (372)
T 1n3l_A 100 VIKAMLESIGVPLEKLKFIKGTDYQ-LSKEYTLDVYR----LSSVVTQHDSKKAGA-------------EV--------- 152 (372)
T ss_dssp HHHHHHHHHTCCCTTEEEEEGGGTT-TSHHHHHHHHH----HHTTSCHHHHHHHTT-------------TT---------
T ss_pred HHHHHHHHcCCChhhcEEEECCeec-ccHHHHHHHHH----HHhhCcHHHHHhchh-------------hh---------
Confidence 55567999999986 78999983 12244555554 889999887764200 00
Q ss_pred ccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHH
Q 006869 406 GRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFW 485 (628)
Q Consensus 406 G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~ 485 (628)
.|.+ .+ .-.+..+|..--+.|-.+.+.+||++|.|...+.....-
T Consensus 153 ---------~~~~----------~~----------------~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rd 197 (372)
T 1n3l_A 153 ---------VKQV----------EH----------------PLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEK 197 (372)
T ss_dssp ---------SCCC----------SS----------------CCHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHH
T ss_pred ---------hccc----------CC----------------CcceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHH
Confidence 0000 00 001245555555666667899999999999999999989
Q ss_pred HHHHhCCCCCceeeeee-ecCCCcccccccccccc
Q 006869 486 LLHALGLYQPYVWEYSR-LNVSNTVMSKRKLNFLV 519 (628)
Q Consensus 486 L~~aLg~~~P~~~~~~~-Ln~~g~KLSKR~~~~lv 519 (628)
|++.+|+..|...+.++ .+.+|+|||||.++..|
T Consensus 198 l~~r~~~~~p~~l~~pll~gldG~KMSKS~~ns~I 232 (372)
T 1n3l_A 198 YLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKI 232 (372)
T ss_dssp HGGGGTCCCCEEEEECCCCCSSCC-------CCSC
T ss_pred HHHHcCCCCCEEEecCccCCCCcccccCCCCCCeE
Confidence 99999988898888786 47789999999987433
No 28
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=99.47 E-value=9.6e-14 Score=146.19 Aligned_cols=191 Identities=16% Similarity=0.132 Sum_probs=144.1
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec-------CCcccccHHHHHHHHHH
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEI 332 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD-------tD~~r~~~~~~~~I~~~ 332 (628)
++-|++.|+.. .-.+.+.|. |||.|||||+ .++.+|...+..|+.+++.|-| .+......++...|..+
T Consensus 20 ~~~l~~~l~~~~~~~vy~G~~--PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~ 96 (323)
T 2cyb_A 20 EEELRQLIETKEKPRAYVGYE--PSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKV 96 (323)
T ss_dssp HHHHHHHHHSCSCCEEEEEEC--CCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECcC--CCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHH
Confidence 56778888642 334667775 6799999998 5688999999989999999966 32334678888999999
Q ss_pred HHHcCCCCCC--ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccC
Q 006869 333 VQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEE 410 (628)
Q Consensus 333 L~wLGl~pd~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~ 410 (628)
+.++|++|++ +.+||+.... -++++ ....|.|+||..++..... +- |+
T Consensus 97 ~~a~Gldp~k~~i~~qS~~~~~-~~~~~----~~~~l~~~~t~~~l~~~~~--~~--------------------~~--- 146 (323)
T 2cyb_A 97 FIALGLDESRAKFVLGSEYQLS-RDYVL----DVLKMARITTLNRARRSMD--EV--------------------SR--- 146 (323)
T ss_dssp HHHTTCCTTTCEEEEGGGTTTS-HHHHH----HHHHHHHHSBHHHHHHHTT--TT--------------------CS---
T ss_pred HHHhCCCccceEEEEcchhccc-hHHHH----HHHHHhCccCHHHHhccch--hh--------------------cc---
Confidence 9999999986 5899998632 12222 2234789999988865311 00 00
Q ss_pred CCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHh
Q 006869 411 GKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL 490 (628)
Q Consensus 411 g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aL 490 (628)
. .+ +.-.+..+|.+..+.|+.+.+++||++|.|...+...+..|++.+
T Consensus 147 ---------~--------~~---------------~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~ 194 (323)
T 2cyb_A 147 ---------R--------KE---------------DPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRL 194 (323)
T ss_dssp ---------C--------SS---------------SCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGG
T ss_pred ---------c--------cC---------------CCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhc
Confidence 0 00 001237889999999999999999999999999999888899999
Q ss_pred CCCCCceeeeeee-cCCCccccccccc
Q 006869 491 GLYQPYVWEYSRL-NVSNTVMSKRKLN 516 (628)
Q Consensus 491 g~~~P~~~~~~~L-n~~g~KLSKR~~~ 516 (628)
|...|...+++++ +.+|+|||||.++
T Consensus 195 ~~~~p~~l~~pll~~l~G~KMSKS~~n 221 (323)
T 2cyb_A 195 GYSSPVCLHTPILVGLDGQKMSSSKGN 221 (323)
T ss_dssp TCCCCEEEEECCCBCTTSSBCCTTTTC
T ss_pred CCCCceEEecCcccCCCCCcccCCcCc
Confidence 9988988888874 7889999999764
No 29
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.46 E-value=2.4e-13 Score=154.18 Aligned_cols=247 Identities=12% Similarity=0.097 Sum_probs=166.5
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCCE---EEEeeec-------------------------CC---
Q 006869 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGY---CYLRYDD-------------------------TN--- 317 (628)
Q Consensus 272 ~~~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G~---~iLRidD-------------------------tD--- 317 (628)
+++|+.=| .|+|||+|||||+|++++.+.+|| .+.|. ++-.|.| +|
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 46788888 999999999999999999888888 33444 4444444 11
Q ss_pred --------------------------------------c------ccccHHHHHHHHHHHHHcCCCCCCccCCcccH-HH
Q 006869 318 --------------------------------------P------EAEKKEYIDHIEEIVQWMGWEPFKITYTSDYF-QE 352 (628)
Q Consensus 318 --------------------------------------~------~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~~-~~ 352 (628)
+ ......+.+.|.++++.||+..|.....|++. +.
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~ 301 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKES 301 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhH
Confidence 1 01234567788899999999998766778777 66
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceE
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLI 432 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~V 432 (628)
+.+..+.|.++|++|... | ++.++++ .++. ...+.|
T Consensus 302 ~~~vi~~L~~kG~~ye~d----------------------------------------G--a~~~~~~-~~g~-~~d~~v 337 (607)
T 1f7u_A 302 MLKAIDLFKEKGLTHEDK----------------------------------------G--AVLIDLT-KFNK-KLGKAI 337 (607)
T ss_dssp HHHHHHHHHHTTCEEEET----------------------------------------T--EEEEEGG-GTCT-TTCEEE
T ss_pred HHHHHHHHHhCCCEEEEC----------------------------------------C--cEEEEec-ccCC-CCCcee
Confidence 778889999999999521 0 1122221 1111 112456
Q ss_pred EEEEecCCCCCCCCcccccccccc---hhhhhhc-cCCcceee--cCccccccchhHHHHHHHhCCCCCceeeeeee-cC
Q 006869 433 AYRIKFTPHPHAGDKWCIYPSYDY---AHCIVDS-IENITHSL--CTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NV 505 (628)
Q Consensus 433 l~R~~~~~h~~~gd~~~~~PtY~f---a~~VDD~-~~~IThvi--rG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~L-n~ 505 (628)
+.|. +| .|+|.. |..++.+ ..+.+++| .|.++..+-++...+.+++|+..+.+|.|..+ .+
T Consensus 338 ~~Ks-------DG-----~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v 405 (607)
T 1f7u_A 338 VQKS-------DG-----TTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMV 405 (607)
T ss_dssp EECT-------TS-----CCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCE
T ss_pred Eecc-------CC-----CcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEeccccc
Confidence 6443 44 666655 5556655 35888886 99999988888888888999977777877432 22
Q ss_pred CCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCC---cccchhhHHH-----HHHhhh
Q 006869 506 SNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSD---SLIRLDRLEY-----HIREEL 577 (628)
Q Consensus 506 ~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~---~~~~~~~le~-----~ir~~~ 577 (628)
. +||||.|+ ..+|.+|.+..+. .|. + +.. +..+ ..-++..+.+ +||-|+
T Consensus 406 ~--kMSkR~G~---------------~v~L~dLlde~~~-~a~-~-~~~---~~~~~~~~~~e~~~~a~~vgi~avry~~ 462 (607)
T 1f7u_A 406 Q--GMSTRKGT---------------VVFLDNILEETKE-KMH-E-VMK---KNENKYAQIEHPEEVADLVGISAVMIQD 462 (607)
T ss_dssp E--SCCGGGTC---------------CCBHHHHHHHHHH-HHH-H-HHH---TCHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred c--cccCCCCC---------------cccHHHHHHHHHH-HHH-H-HHH---hCcccccchhhHHHHHHHHHHHHHHHHH
Confidence 2 69999998 3689999887433 442 2 222 1110 0123344444 899999
Q ss_pred ccCCCCcceeeccceeEEec
Q 006869 578 NKTAPRTMVVLNPLKVVITN 597 (628)
Q Consensus 578 ~~~~~r~~~v~dp~kl~i~n 597 (628)
....+|....||+.++...+
T Consensus 463 Ls~~~~s~~~Fd~d~~~~~~ 482 (607)
T 1f7u_A 463 MQGKRINNYEFKWERMLSFE 482 (607)
T ss_dssp HSSCTTCCEECCHHHHHCCS
T ss_pred hccCCCCCcccCHHHHHHHh
Confidence 99999999999998875443
No 30
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.41 E-value=6e-13 Score=151.62 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=74.3
Q ss_pred CCeeEEEe-CCCCCCcCchhHHHHHHHHHHHHH--HcCC---EEEEeeecC-----------------------------
Q 006869 272 GGNVLTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGG---YCYLRYDDT----------------------------- 316 (628)
Q Consensus 272 ~~~v~tRF-aPsPtG~LHIGharaal~n~l~Ar--~~~G---~~iLRidDt----------------------------- 316 (628)
+++|+.=| .|+|||++||||+|++++...+|| .+.| .++-.|+|.
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 45787777 899999999999999999888888 3344 454455564
Q ss_pred --C-c----------------------------------------ccccHHHHHHHHHHHHHcCCCCCCccCCccc--HH
Q 006869 317 --N-P----------------------------------------EAEKKEYIDHIEEIVQWMGWEPFKITYTSDY--FQ 351 (628)
Q Consensus 317 --D-~----------------------------------------~r~~~~~~~~I~~~L~wLGl~pd~~~~qSd~--~~ 351 (628)
+ + ......+.+.|.++++.||+..|.....|++ .+
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D~~~~es~~~~~~ 277 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRK 277 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHHTT
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccccccCcCccccch
Confidence 1 1 1123456677888999999999877777877 55
Q ss_pred HHHHHHHHHHHcCCcccc
Q 006869 352 ELYELAVELIRRGHAYVD 369 (628)
Q Consensus 352 ~~~e~a~~Li~~G~AY~C 369 (628)
.+.+..++|.++|.+|.|
T Consensus 278 ~v~~vi~~L~~kG~~y~~ 295 (629)
T 2zue_A 278 LFEIALELLSKNENFYIP 295 (629)
T ss_dssp HHHHHHHHHHTSTTEECC
T ss_pred hHHHHHHHHHHCCCcccc
Confidence 667888999999999965
No 31
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.37 E-value=8.1e-12 Score=140.66 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=78.7
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHH-----HcCCEEEEeeecCCc-------------ccccHHHHHHHHHHHHH
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAK-----ERGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQW 335 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar-----~~~G~~iLRidDtD~-------------~r~~~~~~~~I~~~L~w 335 (628)
-++|--.|.|||++||||+|++++.+.+|| .++..|+.-+||.+. ......+.+.|.+++++
T Consensus 28 ~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~ 107 (564)
T 3kfl_A 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQE 107 (564)
T ss_dssp EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 377888899999999999999999888888 466778888888763 23456788999999999
Q ss_pred cCCCCCCccCCc--ccHHHHHHHHHHHHHcCCcccc
Q 006869 336 MGWEPFKITYTS--DYFQELYELAVELIRRGHAYVD 369 (628)
Q Consensus 336 LGl~pd~~~~qS--d~~~~~~e~a~~Li~~G~AY~C 369 (628)
||+.+|...+.+ .|.+...+..++|.++|.+|..
T Consensus 108 lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~ 143 (564)
T 3kfl_A 108 MNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLG 143 (564)
T ss_dssp TTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEe
Confidence 999998754455 4777778889999999999854
No 32
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.25 E-value=9.7e-11 Score=130.84 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=72.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc----------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP----------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~----------------~r~~~~~~~~I~~~L~wL 336 (628)
++|==.|.|||.||||||++.++-+.++| ...|.-++-+.+||. .....+|.+.|.+++++|
T Consensus 12 ~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~l 91 (542)
T 3u1f_A 12 FVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQM 91 (542)
T ss_dssp EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 56666699999999999999999999988 346666666667763 223567889999999999
Q ss_pred CCCCCCccCCc--ccHHHHHHHHHHHHHcCCccc
Q 006869 337 GWEPFKITYTS--DYFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 337 Gl~pd~~~~qS--d~~~~~~e~a~~Li~~G~AY~ 368 (628)
|+.+|-.++.+ +|.+...+...+|.++|++|.
T Consensus 92 gi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~ 125 (542)
T 3u1f_A 92 DYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYL 125 (542)
T ss_dssp TCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEe
Confidence 99987644333 455555667789999999984
No 33
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.18 E-value=8.6e-11 Score=135.92 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=72.0
Q ss_pred eEEEeCCCCCCcCchhHHHH-HHHHHHHHH-----HcCCEEEEeeecCCc-------------ccccHHHHHHHHHHHHH
Q 006869 275 VLTRFPPEPNGYLHIGHAKA-MFVDFGLAK-----ERGGYCYLRYDDTNP-------------EAEKKEYIDHIEEIVQW 335 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGhara-al~n~l~Ar-----~~~G~~iLRidDtD~-------------~r~~~~~~~~I~~~L~w 335 (628)
++|==+|.|||.+||||+++ .++.+.+|| .++..|+.-+|+.+. .....+|.+.|.+++++
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45666899999999999998 888888888 234456666666542 23456788999999999
Q ss_pred cCCCCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 336 MGWEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 336 LGl~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
||+.+|..++.++ |.+...+...+|.++|++|.
T Consensus 85 lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~ 119 (722)
T 1rqg_A 85 AKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVK 119 (722)
T ss_dssp HTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 9999987555554 56666677889999999884
No 34
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.85 E-value=2.7e-08 Score=106.31 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=131.1
Q ss_pred cHHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc-cc---ccHHHHHHH
Q 006869 260 TKEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-EA---EKKEYIDHI 329 (628)
Q Consensus 260 ~~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~-~r---~~~~~~~~I 329 (628)
+++-|++.|+.. .-.+.+-|.| ||.||||| ..++.+|......|..+++.|-|. || .+ ...+....+
T Consensus 22 ~~~~L~~~l~~~~~~~iy~G~~P--Tg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~ 98 (364)
T 2cya_A 22 TEEELKGLLASGARIKGYIGYEP--SGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98 (364)
T ss_dssp THHHHHHHHHHCSCCEEEEEECC--CSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCEEEeccCC--CCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHH
Confidence 356778888653 3457788876 69999999 778899998888899999999993 33 12 345666778
Q ss_pred HHHHHHcCCCCCC--ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhccc
Q 006869 330 EEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 407 (628)
Q Consensus 330 ~~~L~wLGl~pd~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~ 407 (628)
..++.++|++|++ +.+||+.... ..+...++ .+.|++|..++..... + . +
T Consensus 99 ~~~~la~G~dp~k~~i~~qS~~~~~-~~~~~~~~----~l~~~~t~~~l~r~~~--~----k----------------~- 150 (364)
T 2cya_A 99 RRVMEAAGVPVERVRFVDAEELASD-KDYWGLVI----RVAKRASLARVRRALT--I----M----------------G- 150 (364)
T ss_dssp HHHHHHTTCCGGGCEEEEHHHHHTC-HHHHHHHH----HHHHTSCHHHHHTTC---------------------------
T ss_pred HHHHHHhCCCccceEEEecchhhcc-hHHHHHHH----HHHCcCcHHHHHcCch--h----h----------------h-
Confidence 8899999999986 6789987643 23333333 3578888877653210 0 0 0
Q ss_pred ccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHH
Q 006869 408 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 487 (628)
Q Consensus 408 ~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~ 487 (628)
|.. ..+ . + -.+..+|-.--+.|-.+.+.++++.|.|-..+.....-|+
T Consensus 151 --------r~~----~~~----~-----i-----------~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla 198 (364)
T 2cya_A 151 --------RRA----EEA----E-----V-----------DASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVA 198 (364)
T ss_dssp ----------C----CGG----G-----S-----------CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHH
T ss_pred --------hhc----CCC----C-----c-----------cchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHH
Confidence 000 000 0 0 0124555555556666789999999999887777777778
Q ss_pred HHhCCCCCceeeeeee-cCC-----------------Ccccccccc
Q 006869 488 HALGLYQPYVWEYSRL-NVS-----------------NTVMSKRKL 515 (628)
Q Consensus 488 ~aLg~~~P~~~~~~~L-n~~-----------------g~KLSKR~~ 515 (628)
+.+|...|...+.+++ ..+ |+||||+..
T Consensus 199 ~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 199 EKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp TTTTCCCCEEEEECCCBCSSCC----------------CBCCSSSG
T ss_pred HHcCCCCceeeccceeeCCCcccccccccccccccccccccCCCCC
Confidence 8899888888777763 555 789999953
No 35
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.72 E-value=5.6e-08 Score=102.97 Aligned_cols=180 Identities=18% Similarity=0.167 Sum_probs=117.5
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----C----CcccccHHHHHHHHHHHHHcCCCCCC--c
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----T----NPEAEKKEYIDHIEEIVQWMGWEPFK--I 343 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----t----D~~r~~~~~~~~I~~~L~wLGl~pd~--~ 343 (628)
.+.+.| .|||.|||||+..++.+|......|..+++.|.| | ||+. ..+....+..++.++|++|++ +
T Consensus 14 ~v~~G~--~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~-~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 14 RILSGM--RPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK-LKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp EEEEEE--CCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred eEEEee--CCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH-HHHHHHHHHHHHHHhCCChhHeEE
Confidence 345555 5679999999998888998888888999999999 6 6654 556667777888899999984 7
Q ss_pred cCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCC
Q 006869 344 TYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQN 423 (628)
Q Consensus 344 ~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~ 423 (628)
.+||+..+ +.+++- .+.|+++..++...-. |.+. .-|++.
T Consensus 91 f~qS~~~~-~~el~~-------~l~~~~~v~~l~r~~~------------------~k~~----------~~r~~~---- 130 (340)
T 2g36_A 91 FVQSGVKE-HAELAL-------LFSMIVSVSRLERVPT------------------YKEI----------KSELNY---- 130 (340)
T ss_dssp EEGGGCTH-HHHHHH-------HHHTTSCHHHHHTCHH------------------HHTC--------------------
T ss_pred EECCchHH-HHHHHH-------HHHccCCHHHHHHhHH------------------HHhH----------HHHhcc----
Confidence 89999754 333322 3568888877643210 0000 001110
Q ss_pred CCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhC------CCCCc-
Q 006869 424 DNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPY- 496 (628)
Q Consensus 424 ~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg------~~~P~- 496 (628)
.| + .-.+..+|-.--+.|-.+.+.++|+.|.|...+.....-|++.++ +..|.
T Consensus 131 -----~~--------------~-~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~ 190 (340)
T 2g36_A 131 -----KD--------------L-STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEA 190 (340)
T ss_dssp ------C--------------C-CSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEE
T ss_pred -----CC--------------C-CChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCchh
Confidence 00 0 001245555555556567899999999998877776666666543 23453
Q ss_pred -eeeeee-ecCCCccccccccc
Q 006869 497 -VWEYSR-LNVSNTVMSKRKLN 516 (628)
Q Consensus 497 -~~~~~~-Ln~~g~KLSKR~~~ 516 (628)
.-+.++ .+.+|+||||+.++
T Consensus 191 ~~~~~~~l~gldG~KMSKS~~n 212 (340)
T 2g36_A 191 ILSRVPKLPGTDGRKMSKSYGN 212 (340)
T ss_dssp EECCSCCCCCTTSSCCCGGGTC
T ss_pred hhccccccCCCCccccCCCCCC
Confidence 222455 46789999999886
No 36
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=98.66 E-value=5.1e-08 Score=102.23 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=123.1
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec-C----C--cccccHHHHHHHHHHH
Q 006869 261 KEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-T----N--PEAEKKEYIDHIEEIV 333 (628)
Q Consensus 261 ~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD-t----D--~~r~~~~~~~~I~~~L 333 (628)
.+-|++.|+...-.+.+.|.| ||.||||| ..++.+|......|..+++.|-| + | ......++...|..++
T Consensus 17 ~~~l~~~L~~~~~~vy~G~~P--Tg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 17 EEELREVLKKDEKSAYIGFEP--SGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVF 93 (314)
T ss_dssp HHHHHHHHTSSSEEEEEEECC--CSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEccCC--CCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence 566778887333357899998 58999999 88889999999889999999954 3 2 2245667788899999
Q ss_pred HHcCCCCCCccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCe
Q 006869 334 QWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKA 413 (628)
Q Consensus 334 ~wLGl~pd~~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~ 413 (628)
.++|++ ..+.+||+.... ..+...++ .+.|++|..++..... +-. |.
T Consensus 94 ~a~G~d-~~~~~qs~~~~~-~~~~~~~~----~l~~~~t~~~l~~~~~--~~~--~~----------------------- 140 (314)
T 2zp1_A 94 EAMGLK-AKYVYGSEFQLD-KDYTLNVY----RLALKTTLKRARRSME--LIA--RE----------------------- 140 (314)
T ss_dssp HHTTCC-CEEEEGGGTTTS-HHHHHHHH----HHHHHSCHHHHHHHTT--TTS--CC-----------------------
T ss_pred HhcCCC-eEEEECChhhcc-hHHHHHHH----HHHCcCcHHHHhccch--hhh--hc-----------------------
Confidence 999998 667779998643 23344444 3578888887765421 000 00
Q ss_pred EEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCCC
Q 006869 414 TLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGLY 493 (628)
Q Consensus 414 ~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~~ 493 (628)
. . .+ -.+..+|-.--+.|-...+.++++.|.|...+. -|.+.+.-.
T Consensus 141 ------~--------~--------------~~--~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~----~l~R~i~~~ 186 (314)
T 2zp1_A 141 ------D--------E--------------NP--KVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH----MLARELLPK 186 (314)
T ss_dssp ------C--------S--------------SC--CTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH----HHHHHHSSS
T ss_pred ------c--------C--------------CC--CchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH----HHHHHhcCC
Confidence 0 0 00 011333333334444456899999998876543 244445546
Q ss_pred CCceeeeee-ecCCC-ccccccccc
Q 006869 494 QPYVWEYSR-LNVSN-TVMSKRKLN 516 (628)
Q Consensus 494 ~P~~~~~~~-Ln~~g-~KLSKR~~~ 516 (628)
.|...+.++ .+.+| +|||||.++
T Consensus 187 ~~~~~~~~~l~~l~G~~KMSKS~~~ 211 (314)
T 2zp1_A 187 KVVCIHNPVLTGLDGEGKMSSSKGN 211 (314)
T ss_dssp CCEEEEECCCBCTTSSSBCCTTTTC
T ss_pred CcEEeeccccccCCcccccCCCCcc
Confidence 777766676 46778 799999654
No 37
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=98.57 E-value=6.9e-08 Score=102.60 Aligned_cols=183 Identities=14% Similarity=0.065 Sum_probs=117.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec-------CCcccccHHHHHHHHHHHHHcCCCCCC--ccC
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD-------TNPEAEKKEYIDHIEEIVQWMGWEPFK--ITY 345 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD-------tD~~r~~~~~~~~I~~~L~wLGl~pd~--~~~ 345 (628)
+.+=|- |||.|||||...++.+|..... +..+++.|.| .||+ +..+....+..++.++|++|++ +.+
T Consensus 7 i~sG~~--PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~~d~~-~i~~~~~~~~~~~lA~Gldp~k~~if~ 82 (348)
T 2yy5_A 7 ALTGIQ--ASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVDFQPQ-ALKQNNFDLVRTLLAVGLDPQKACLFL 82 (348)
T ss_dssp EEEEEC--CCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCCCCHH-HHHHHHHHHHHHHHHhCCChhHeEEEE
Confidence 445554 5699999999988899977666 7889999999 6775 4556667778888999999984 789
Q ss_pred CcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCC
Q 006869 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDN 425 (628)
Q Consensus 346 qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~ 425 (628)
||+..+ +.++.-.| .|.++..++..... |..... . .+ +
T Consensus 83 qS~~~~-~~el~w~l-------~~~~~~~~l~R~~~--~k~~~~----~----------~~----------~-------- 120 (348)
T 2yy5_A 83 QSDLLE-HSMMGYLM-------MVQSNLGELQRMTQ--FKAKKA----E----------QT----------R-------- 120 (348)
T ss_dssp GGGCHH-HHHHHHHH-------HHHSBHHHHHHCHH--HHTTC-------------------------------------
T ss_pred CCcccc-hhHHHHHH-------HhhccHHHHhchHH--HHHHHH----h----------hc----------c--------
Confidence 999875 44433222 47777777654321 100000 0 00 0
Q ss_pred CCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhC------CCCCceee
Q 006869 426 FNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE 499 (628)
Q Consensus 426 ~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg------~~~P~~~~ 499 (628)
.+.| . .+ .-.+..+|-.--+.|-.+.+.++|..|.|-..+.....-|++.++ +..|...+
T Consensus 121 -~~~~----~--------~~-~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~ 186 (348)
T 2yy5_A 121 -NPNG----T--------LN-IPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQ 186 (348)
T ss_dssp -------------------C-CBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
T ss_pred -cccc----C--------CC-CChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeec
Confidence 0000 0 00 012245555555555567899999999998887776666666664 44565555
Q ss_pred e---ee-ecCCC--cccccccccc
Q 006869 500 Y---SR-LNVSN--TVMSKRKLNF 517 (628)
Q Consensus 500 ~---~~-Ln~~g--~KLSKR~~~~ 517 (628)
. ++ .+++| +||||+.++.
T Consensus 187 ~~~~~~l~gL~g~~~KMSKS~~n~ 210 (348)
T 2yy5_A 187 NKDTNRIMDLFDPTKKMSKSSKNQ 210 (348)
T ss_dssp CTTTTTCBCSSCTTSBCCSSCSCG
T ss_pred ccccccccCCCCcchhcCCCCCCC
Confidence 2 43 36677 8999999873
No 38
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=98.52 E-value=2.6e-07 Score=97.45 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=114.5
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeec----CCcc--cccHHHHHHHHHHHHHcCCCCCC--ccCC
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDD----TNPE--AEKKEYIDHIEEIVQWMGWEPFK--ITYT 346 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidD----tD~~--r~~~~~~~~I~~~L~wLGl~pd~--~~~q 346 (628)
+.+=|- |||.|||||...++.+|..... |..+++.|-| |+|. ....+....+..++-++|++|++ +.+|
T Consensus 4 vysG~~--PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~q 80 (328)
T 1i6k_A 4 IFSGIQ--PSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ 80 (328)
T ss_dssp EEEEEC--CCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred EEEeeC--CCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEec
Confidence 334444 5699999999988899987755 8899999999 7421 24556667788888999999984 7889
Q ss_pred cccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCC
Q 006869 347 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNF 426 (628)
Q Consensus 347 Sd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~ 426 (628)
|+..+ +.+..-.| .|.++..++.... -|.+... + .
T Consensus 81 S~~~~-~~~l~w~l-------~~~~~~~~l~r~~------------------~~k~~~~-~----------------~-- 115 (328)
T 1i6k_A 81 SEVPA-HAQAAWML-------QCIVYIGELERMT------------------QFKEKSA-G----------------K-- 115 (328)
T ss_dssp GGCTH-HHHHHHHH-------HHHSCHHHHHTCH------------------HHHHHHT-T----------------C--
T ss_pred Cchhh-hhHHHHHH-------hccccHHHHHHHH------------------HHHHHHh-c----------------c--
Confidence 99854 44444222 3666666554321 0111110 0 0
Q ss_pred CCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhC------CCCCceee-
Q 006869 427 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALG------LYQPYVWE- 499 (628)
Q Consensus 427 ~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg------~~~P~~~~- 499 (628)
| + --.+..+|-.--+.|-.+.+.++|+.|.|-..+.....-|++.++ +..|....
T Consensus 116 ---~--------------~-~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~ 177 (328)
T 1i6k_A 116 ---E--------------A-VSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIP 177 (328)
T ss_dssp ---S--------------S-CCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECC
T ss_pred ---C--------------C-CCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHHHhCcccccccCCCeeeec
Confidence 0 0 001244555555555566899999999998887776666666665 33554443
Q ss_pred --eee-ecCCC--cccccccccc
Q 006869 500 --YSR-LNVSN--TVMSKRKLNF 517 (628)
Q Consensus 500 --~~~-Ln~~g--~KLSKR~~~~ 517 (628)
.++ .+.+| +||||+.++.
T Consensus 178 ~~~~~l~gl~G~~~KMSKS~~n~ 200 (328)
T 1i6k_A 178 KVGARIMSLVDPTKKMSKSDPNP 200 (328)
T ss_dssp SSSSSCBCSSCTTSBCCTTCSCG
T ss_pred cccccccCCCCCccCCCCCCCCc
Confidence 244 36778 8999999873
No 39
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.46 E-value=1.6e-07 Score=99.89 Aligned_cols=182 Identities=16% Similarity=0.078 Sum_probs=114.8
Q ss_pred CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCCc------ccccHHHHHHHHHHHHHcCCCCCC--cc
Q 006869 273 GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTNP------EAEKKEYIDHIEEIVQWMGWEPFK--IT 344 (628)
Q Consensus 273 ~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD~------~r~~~~~~~~I~~~L~wLGl~pd~--~~ 344 (628)
-.+.+.|.| ||.|||||+..++.+|.........+++.-|++.- .....+....|..++.++|++|++ +.
T Consensus 23 ~~vysG~~P--TG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~ 100 (351)
T 1yi8_B 23 PRVLTGDRP--TGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCV 100 (351)
T ss_dssp SEEEEEECC--SSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred cEEEEeeCC--CCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEE
Confidence 457889987 59999999998888997655444455555554421 124556667788888899999985 77
Q ss_pred CCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCC
Q 006869 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQND 424 (628)
Q Consensus 345 ~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~ 424 (628)
+||+..+ +.+++ ..|.|+++..++...- +. .+.....
T Consensus 101 ~qS~~~~-~~el~-------~~l~~~~~v~~l~r~~-----------~~-------k~~~~~~----------------- 137 (351)
T 1yi8_B 101 VQSAVPE-LAELT-------VYFLNLVTVSHLRQNP-----------TV-------KAEIAQK----------------- 137 (351)
T ss_dssp EGGGCTH-HHHHH-------HHHHTTSBHHHHHTCH-----------HH-------HHHHHHH-----------------
T ss_pred EcCchhh-HHHHH-------HHHhccCCHHHHHhhh-----------HH-------HHHHhhc-----------------
Confidence 8999864 33322 2467999888775320 11 1110000
Q ss_pred CCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHh----C--CCCCcee
Q 006869 425 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVW 498 (628)
Q Consensus 425 ~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aL----g--~~~P~~~ 498 (628)
|| . .+ .-.+..+|..--+.|-.+.+.++|+.|.|...+.....-|++.+ | +..|...
T Consensus 138 -----~f-------~----~~-~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~ 200 (351)
T 1yi8_B 138 -----GY-------G----ER-VPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ 200 (351)
T ss_dssp -----TC-------T----TC-CBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEE
T ss_pred -----CC-------C----CC-CchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeee
Confidence 00 0 00 00124555555555655689999999999888877666666644 3 3455432
Q ss_pred --eeee-ecCCCc-cccccccc
Q 006869 499 --EYSR-LNVSNT-VMSKRKLN 516 (628)
Q Consensus 499 --~~~~-Ln~~g~-KLSKR~~~ 516 (628)
+.++ .+.+|+ |||||.++
T Consensus 201 ~~~~~~l~~ldG~~KMSKS~~n 222 (351)
T 1yi8_B 201 LSRVPRLPGLDGQAKMSKSLGN 222 (351)
T ss_dssp ECSSCSCCCTTSSSCCCTTTTC
T ss_pred eecCccccCCCCccccCCCCCC
Confidence 2455 467887 99999987
No 40
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=98.45 E-value=1.1e-06 Score=93.06 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=112.1
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcC-CEEEEeeecC-----C--cc-cccHHHHHHHHHHHHHcCCCCCC--ccCCcccH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERG-GYCYLRYDDT-----N--PE-AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 350 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~-G~~iLRidDt-----D--~~-r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~ 350 (628)
.|||.|||||...++.+|......| ..+++.|-|- | +. ....+....+..++.++|++|++ +.+||+..
T Consensus 9 ~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i~~qS~~~ 88 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQSHVP 88 (337)
T ss_dssp CSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEGGGST
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEEEEcCcch
Confidence 4669999999998888998777776 6788888883 2 22 23456667778888899999984 78999986
Q ss_pred HHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCc
Q 006869 351 QELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYD 430 (628)
Q Consensus 351 ~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D 430 (628)
+ +.+++- .+.|+++..++...-. |.+ +. .. .|
T Consensus 89 ~-~~el~~-------~l~~~~~~~~l~r~~~------------------~k~----r~-------------~~-----~~ 120 (337)
T 2el7_A 89 E-HTELSW-------VFTTLTPLGDLTRMTQ------------------FKD----KA-------------SK-----QE 120 (337)
T ss_dssp H-HHHHHH-------HHHHTSBHHHHHTSHH------------------HHH----HT-------------TS-----SS
T ss_pred h-hHHHHH-------HHHccCCHHHHHHhHH------------------HHH----Hh-------------cc-----CC
Confidence 4 444332 2668888776642200 111 00 00 00
Q ss_pred eEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHh----C--CCCCceeee---e
Q 006869 431 LIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHAL----G--LYQPYVWEY---S 501 (628)
Q Consensus 431 ~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aL----g--~~~P~~~~~---~ 501 (628)
+ --.+..+|-.--+.|-.+.+.++++.|.|-..+...-.-|++.+ | +..|...+. +
T Consensus 121 --------------~-~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p 185 (337)
T 2el7_A 121 --------------T-VWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAP 185 (337)
T ss_dssp --------------C-CBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSC
T ss_pred --------------C-CChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccc
Confidence 0 00124455444555555689999999999887777665566543 5 455655443 4
Q ss_pred e-ecCCC-ccccccccc
Q 006869 502 R-LNVSN-TVMSKRKLN 516 (628)
Q Consensus 502 ~-Ln~~g-~KLSKR~~~ 516 (628)
+ .+.+| +||||+.++
T Consensus 186 ~l~gldG~~KMSKS~~n 202 (337)
T 2el7_A 186 RVPGIDGKAKMSKSLGN 202 (337)
T ss_dssp CCBCTTSSSBCCTTTTC
T ss_pred cccCCCCccccCCCCCC
Confidence 5 46788 899999987
No 41
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=97.97 E-value=1e-05 Score=95.37 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=67.7
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCC---c-------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTN---P-------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD---~-------------~r~~~~~~~~I~~~L~wL 336 (628)
+++==+|.|||.|||||+|++++...+|| ...|.-++..-.+| . .....++++.|.++|+.|
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34445799999999999999999999999 34566555544443 1 122456788899999999
Q ss_pred CCCCC--Cc--cCCcccHHHHHHHHHHHHHcCCccc
Q 006869 337 GWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 337 Gl~pd--~~--~~qSd~~~~~~e~a~~Li~~G~AY~ 368 (628)
|+..| .. +...+|.....+...+|.++|++|.
T Consensus 136 Gis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~ 171 (880)
T 4arc_A 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYK 171 (880)
T ss_dssp TCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98765 43 3334455555566779999999984
No 42
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.95 E-value=1.5e-05 Score=94.02 Aligned_cols=94 Identities=24% Similarity=0.282 Sum_probs=69.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEE---eeecCCc-------------ccccHHHHHHHHHHHHHc
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYL---RYDDTNP-------------EAEKKEYIDHIEEIVQWM 336 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iL---RidDtD~-------------~r~~~~~~~~I~~~L~wL 336 (628)
+++=-+|.|||.|||||+|+.++...+||. ..|.-++ -+|+.+. .....++.+.|.++++.|
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~L 115 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLM 115 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 455457999999999999999998888883 3455444 4555442 123467889999999999
Q ss_pred CCCCC--Cc--cCCcccHHHHHHHHHHHHHcCCccc
Q 006869 337 GWEPF--KI--TYTSDYFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 337 Gl~pd--~~--~~qSd~~~~~~e~a~~Li~~G~AY~ 368 (628)
|+..| .. +..++|.........+|.++|++|.
T Consensus 116 Gi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~ 151 (878)
T 2v0c_A 116 GILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYR 151 (878)
T ss_dssp TCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 98765 43 4455666666677889999999985
No 43
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=97.86 E-value=2.6e-05 Score=91.35 Aligned_cols=94 Identities=20% Similarity=0.159 Sum_probs=68.3
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc----------------------------------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP---------------------------------- 318 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~---------------------------------- 318 (628)
+++--+|.|||.|||||+++.++...+|| ...|.-++++--.|.
T Consensus 37 ~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (810)
T 1wkb_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (810)
T ss_dssp EEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHH
T ss_pred EEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHH
Confidence 67888999999999999999999999999 567888887532221
Q ss_pred ------ccccHHHHHHHHHHHHHcCCCCC--CccCCcc----cHHHHHHHHHHHHHcCCccc
Q 006869 319 ------EAEKKEYIDHIEEIVQWMGWEPF--KITYTSD----YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 319 ------~r~~~~~~~~I~~~L~wLGl~pd--~~~~qSd----~~~~~~e~a~~Li~~G~AY~ 368 (628)
.....++.+.|.+++++||+..| ..++.++ |.........+|.++|.+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~ 178 (810)
T 1wkb_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (810)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 11123455788999999998655 5544444 33333455678999999873
No 44
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.82 E-value=0.0002 Score=77.10 Aligned_cols=174 Identities=18% Similarity=0.235 Sum_probs=102.0
Q ss_pred eeEEEeCCCCCCcCchhHHHHHH-HHHHHHHHcCCEEEEeeecC-----Cc---ccccHHHHHHHHHHHHHcCCCCCC--
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----NP---EAEKKEYIDHIEEIVQWMGWEPFK-- 342 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal-~n~l~Ar~~~G~~iLRidDt-----D~---~r~~~~~~~~I~~~L~wLGl~pd~-- 342 (628)
.+.+=|. |||.|||||...++ .+|+ -..+|..+++=|-|- |+ .....+....+..++-.+|++|++
T Consensus 75 ~i~sG~~--PTG~lHLGh~v~~~~~~~l-Q~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~ 151 (392)
T 3jxe_A 75 FLYTGRG--PSGPMHIGHIIPFFATKWL-QEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTF 151 (392)
T ss_dssp EEEEEEC--CSSCCBHHHHHHHHHHHHH-HHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEE
T ss_pred EEEeccC--CCCchhHHHHHHHHHHHHH-HHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceE
Confidence 3455555 45999999999885 7883 444677555555443 22 223445556677778888999986
Q ss_pred ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCC
Q 006869 343 ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQ 422 (628)
Q Consensus 343 ~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~ 422 (628)
+.+||+..+ |++.+-.|- |..|..++...-+ +. ...+
T Consensus 152 i~~qS~~~~-~~~~~~~l~-------~~~t~~~~~~~~~--~~---~~~~------------------------------ 188 (392)
T 3jxe_A 152 IFQNSEFTK-IYEMAIPIA-------KKINFSMAKAVFG--FT---EQSK------------------------------ 188 (392)
T ss_dssp EEETTTSTH-HHHHHHHHH-------HHSBHHHHHHHHC--CC---TTSB------------------------------
T ss_pred EEECchhHH-HHHHHHHHH-------hhCCHHHHhhhhc--cC---CCCc------------------------------
Confidence 778999886 667666652 4455554432200 00 0000
Q ss_pred CCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccC-CcceeecCccccccchhHHHHHHHhCCCCCceeeee
Q 006869 423 NDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE-NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYS 501 (628)
Q Consensus 423 ~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~-~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~ 501 (628)
.| --.||.-+-+. -.+. .-++|..|.|-..+-..=.-|+..+|...|...+.+
T Consensus 189 ---------------------~g--~f~YP~LQaaD---il~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~ 242 (392)
T 3jxe_A 189 ---------------------IG--MIFFPAIQIAP---TFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSK 242 (392)
T ss_dssp ---------------------HH--HHHHHHHHHGG---GGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEEC
T ss_pred ---------------------hH--HHHHHHHHHhh---HHhhcCCceeecccchHHHHHHHHHHHHHcCCCCCeeeecc
Confidence 01 01144333333 2234 256788888755433322334557888888777666
Q ss_pred ee-cCCC--cccccccccccc
Q 006869 502 RL-NVSN--TVMSKRKLNFLV 519 (628)
Q Consensus 502 ~L-n~~g--~KLSKR~~~~lv 519 (628)
++ .++| +||||+.++..|
T Consensus 243 ~l~gLdG~~~KMSKS~~ns~I 263 (392)
T 3jxe_A 243 FVPSLTSLSGKMSASKPETAI 263 (392)
T ss_dssp CCCCSSCSSSCCCTTSGGGCC
T ss_pred cccCCCCCccccccCCCCCee
Confidence 63 6677 599999976333
No 45
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.73 E-value=5e-05 Score=79.80 Aligned_cols=171 Identities=14% Similarity=0.038 Sum_probs=99.8
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Ccc-cccHHHHHHHHHHHHHcCCCCCC--ccCCcccHHHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQEL 353 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~-r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~~~ 353 (628)
.|||.|||||...++.+|..-.. |..+++-|-|. |+. ....+....+..++-.+|++|++ +.+||+..+ +
T Consensus 11 ~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~qS~~~~-~ 88 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKE-V 88 (322)
T ss_dssp CCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGGGCTH-H
T ss_pred CCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcchh-H
Confidence 57899999999987787765444 66666656553 221 23455566677777889999985 778999864 4
Q ss_pred HHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceEE
Q 006869 354 YELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIA 433 (628)
Q Consensus 354 ~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl 433 (628)
.+++-. +.|+++..++.... + |.+.. +. ...
T Consensus 89 ~el~~~-------l~~~~~~~~l~r~~-----------~-------~K~~~-~~---------------~~~-------- 119 (322)
T 3tzl_A 89 MELYWI-------LSQFTPMGLLERAH-----------S-------YKDKV-AK---------------GLS-------- 119 (322)
T ss_dssp HHHHHH-------HGGGCBHHHHHSCH-----------H-------HHHHH-HT---------------TCC--------
T ss_pred HHHHHH-------HhccCcHHHHHhhh-----------H-------HHHHH-cc---------------CCC--------
Confidence 444322 35888776664210 0 10000 00 000
Q ss_pred EEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHHHHhCC------CCCceee---eee-e
Q 006869 434 YRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLLHALGL------YQPYVWE---YSR-L 503 (628)
Q Consensus 434 ~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~~aLg~------~~P~~~~---~~~-L 503 (628)
+ -.+..+|-.--+.|-.+.+.++|..|.|-..+-..=.-|++.++. ..|...+ .++ .
T Consensus 120 --~-----------~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~ 186 (322)
T 3tzl_A 120 --A-----------SHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVV 186 (322)
T ss_dssp --C-----------BHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCB
T ss_pred --C-----------chHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCchhhhcccccccc
Confidence 0 012444444445555567899999998855443322223343432 3443322 344 4
Q ss_pred cCCCccccccccc
Q 006869 504 NVSNTVMSKRKLN 516 (628)
Q Consensus 504 n~~g~KLSKR~~~ 516 (628)
..+|+||||+.++
T Consensus 187 ~l~G~KMSKS~~n 199 (322)
T 3tzl_A 187 GTDGAKMSKSYQN 199 (322)
T ss_dssp CTTSSBCCGGGTC
T ss_pred CCCCCcCCCCCCC
Confidence 6789999999876
No 46
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.69 E-value=0.00016 Score=78.78 Aligned_cols=192 Identities=19% Similarity=0.203 Sum_probs=108.2
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Ccc-----------cccH
Q 006869 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----------AEKK 323 (628)
Q Consensus 261 ~~~~~~h~~~~~~~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~-----------r~~~ 323 (628)
.+-|++.|+. +++++.=..=-|||. |||||.. ++.++..-...|..+++=|-|- ||. ....
T Consensus 25 ~~~L~~~L~~-~~~~~vy~G~dPTg~sLHlGh~v-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~ 102 (432)
T 1h3f_A 25 EEELLAKLKE-GRPLTVKLGADPTRPDLHLGHAV-VLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETR 102 (432)
T ss_dssp HHHHHHHHHT-CSCCEEEEEECTTCCSCBHHHHH-HHHHHHHHHHTTCEEEEEECCCC---------------------H
T ss_pred HHHHHHHHhc-CCCcEEEEcccCCCCCCchhhHH-HHHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHH
Confidence 6678888852 333322223357885 9999999 6787777777777877777773 442 1233
Q ss_pred HHHHHHHHHHHHcCCC--CCC--ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHH
Q 006869 324 EYIDHIEEIVQWMGWE--PFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKL 399 (628)
Q Consensus 324 ~~~~~I~~~L~wLGl~--pd~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~ 399 (628)
+....|...+. .|++ |++ +.+||+.+..++ ++ .+++ +.|+.|...+.+ ...
T Consensus 103 ~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~-~~-~~l~----l~~~~tv~~ml~--------------~~~---- 157 (432)
T 1h3f_A 103 ENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLT-FK-EVVR----LTSLMTVAQMLE--------------RED---- 157 (432)
T ss_dssp HHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCB-HH-HHHH----HHTTSBHHHHTT--------------SHH----
T ss_pred HHHHHHHHHHH-HHhcCCCCceEEEECCcccccCc-HH-HHHH----HhCcCcHHHHHh--------------hhh----
Confidence 33444444442 5777 764 678998754221 11 2222 234444333210 000
Q ss_pred HHHhhcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCcccccc
Q 006869 400 FEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETR 479 (628)
Q Consensus 400 f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~ 479 (628)
|.+ |++ .+ +. ++ .+..+|-.--+.|-...+.++++.|.|-..+
T Consensus 158 ~k~-------------r~~----~~-----~~----is-----------~~ef~YPlLQaaDil~l~~~l~~gG~DQ~~n 200 (432)
T 1h3f_A 158 FKK-------------RYE----AG-----IP----IS-----------LHELLYPFAQAYDSVAIRADVEMGGTDQRFN 200 (432)
T ss_dssp HHH-------------HHH----TT-----CC----CB-----------GGGGTHHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred HHH-------------Hhh----cC-----CC----CC-----------ccccchhhHHhhhhhhcCccEEEechHHHHH
Confidence 100 000 00 00 00 1134555555555556679999999987776
Q ss_pred chhHHHHHHHhCCCCCceeeeeee-cCCCc-cccccccc
Q 006869 480 RASYFWLLHALGLYQPYVWEYSRL-NVSNT-VMSKRKLN 516 (628)
Q Consensus 480 ~~~q~~L~~aLg~~~P~~~~~~~L-n~~g~-KLSKR~~~ 516 (628)
...-.-|++.+|...|...+.++| ..+|+ ||||+.++
T Consensus 201 i~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~n 239 (432)
T 1h3f_A 201 LLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDN 239 (432)
T ss_dssp HHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGTC
T ss_pred HHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCCC
Confidence 665566777888766666666764 67897 99999976
No 47
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.69 E-value=0.00013 Score=78.42 Aligned_cols=85 Identities=13% Similarity=0.184 Sum_probs=55.2
Q ss_pred CCeeEEEeCCCCCCcCchhHHHHH-HHHHHHHHHcCCEEEEeeecC--------CcccccHHHHHHHHHHHHHcCCCCCC
Q 006869 272 GGNVLTRFPPEPNGYLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT--------NPEAEKKEYIDHIEEIVQWMGWEPFK 342 (628)
Q Consensus 272 ~~~v~tRFaPsPtG~LHIGharaa-l~n~l~Ar~~~G~~iLRidDt--------D~~r~~~~~~~~I~~~L~wLGl~pd~ 342 (628)
+++++.=-.=.|||.|||||...+ +.+| +-+.+|..+++=|.|. +++ ...+.......++-.+|++|++
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~-lQ~~~g~~v~i~I~D~~a~~~r~~~~e-~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY-LQDAFNIQVIIQILDDIKVLNREATIN-EASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH-HHHHHCCEEEEEECHHHHHHTTSCCHH-HHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH-HHHhcCCeEEEEeCchHHhhcCCCCHH-HHHHHHHHHHHHHHHcCCCCcc
Confidence 444333223367899999999999 7888 4455676666667772 333 2334445566677788999986
Q ss_pred --ccCCcccHHHHHHHHH
Q 006869 343 --ITYTSDYFQELYELAV 358 (628)
Q Consensus 343 --~~~qSd~~~~~~e~a~ 358 (628)
+.+||+....++..+-
T Consensus 158 t~i~~qS~~~~~~~~~~~ 175 (386)
T 3hzr_A 158 TFIYTDYQYFGKMYRTIS 175 (386)
T ss_dssp EEEEEHHHHHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHHHH
Confidence 6678888764444443
No 48
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.51 E-value=0.0003 Score=75.74 Aligned_cols=91 Identities=21% Similarity=0.244 Sum_probs=57.1
Q ss_pred HHHHHhhhhcC-CeeEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeecCC--------cccccHHHHHHHH
Q 006869 262 EVLDKHLEVTG-GNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDTN--------PEAEKKEYIDHIE 330 (628)
Q Consensus 262 ~~~~~h~~~~~-~~v~tRFaPsPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidDtD--------~~r~~~~~~~~I~ 330 (628)
+.+.+.++... -.+.+=| .|| |.|||||+..++ .+| +-+..+..+++-|-|-- ......++...+.
T Consensus 63 ~~l~~~l~~g~~~~vy~G~--~PTa~~lHlGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~ 139 (393)
T 3hv0_A 63 EKILDVYEKGELFYLYTGR--GPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENM 139 (393)
T ss_dssp HHHHHHHHTTCCCEEEEEE--CCSSSSCBSTTHHHHHHHHH-HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeCC--CCCCCCccHHHHHHHHHHHH-HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHH
Confidence 33444554321 1233444 567 689999999988 788 44555666777787631 1123345555677
Q ss_pred HHHHHcCCCCCC--ccCCcccHHHHHH
Q 006869 331 EIVQWMGWEPFK--ITYTSDYFQELYE 355 (628)
Q Consensus 331 ~~L~wLGl~pd~--~~~qSd~~~~~~e 355 (628)
.++-.+|++|++ +..||+....|+.
T Consensus 140 ~~~lA~GlDp~kt~i~~ns~~~~~~~~ 166 (393)
T 3hv0_A 140 KDIIACGFDPELTFIFTNLEYIAELYP 166 (393)
T ss_dssp HHHHTTCCCTTTEEEEEHHHHHHHHHH
T ss_pred HHHHHcCCCCcceEEEECCHHHHHHHH
Confidence 777789999986 5677887765543
No 49
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=97.51 E-value=3.4e-05 Score=90.46 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=65.9
Q ss_pred EEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCc---------cc------------------------c
Q 006869 277 TRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNP---------EA------------------------E 321 (628)
Q Consensus 277 tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~---------~r------------------------~ 321 (628)
+==+|.|||.|||||+++.++...+|| ...|.-++++-.+|. ++ .
T Consensus 43 ~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~ 122 (821)
T 1ile_A 43 YEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRES 122 (821)
T ss_dssp CCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHH
T ss_pred ecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHH
Confidence 334789999999999999999999999 456776776666652 01 1
Q ss_pred cHHHHHHHHHHHHHcC--CCCCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 322 KKEYIDHIEEIVQWMG--WEPFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 322 ~~~~~~~I~~~L~wLG--l~pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
..++.+.+.+.+++|| ++|+..++.++ |.........+|.++|++|.
T Consensus 123 ~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~ 173 (821)
T 1ile_A 123 VFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYR 173 (821)
T ss_dssp TTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeee
Confidence 2245677888999999 78887655554 22222334468999999984
No 50
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=97.51 E-value=0.0013 Score=71.54 Aligned_cols=221 Identities=12% Similarity=0.062 Sum_probs=119.3
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cccc----------ccHH
Q 006869 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPEA----------EKKE 324 (628)
Q Consensus 261 ~~~~~~h~~~~~~~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~r----------~~~~ 324 (628)
.+.|++.|+...-.+.+=| -|||. |||||+. ++.++..-...|-.++.=|-|- ||.| ...+
T Consensus 21 ~e~L~~~L~~~~~~iy~G~--dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~ 97 (432)
T 2jan_A 21 LDTLAAEAQRGPMTVYAGF--DPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAE 97 (432)
T ss_dssp HHHHHHHHHHSCCEEEEEE--CCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEee--CCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHH
Confidence 5567777763333344444 56795 9999966 5677766666666666666551 4522 2233
Q ss_pred HHHHHHHH-HHHc--CCCCCC--ccCCcccHHH--HHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHh
Q 006869 325 YIDHIEEI-VQWM--GWEPFK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESL 397 (628)
Q Consensus 325 ~~~~I~~~-L~wL--Gl~pd~--~~~qSd~~~~--~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l 397 (628)
....|.+. ..|| |++|++ +.+||+.... +.+++.. +-|+.|..++...-.
T Consensus 98 n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~-------l~~~~tv~~m~~~~~---------------- 154 (432)
T 2jan_A 98 WTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRD-------IGKHFSVNVMLARDT---------------- 154 (432)
T ss_dssp HHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHH-------TGGGCBHHHHHHSHH----------------
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHH-------HhccCcHHHHhcchH----------------
Confidence 44444443 2343 666765 6688886543 2222211 245566555543210
Q ss_pred HHHHHhhcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccC----CcceeecC
Q 006869 398 KLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE----NITHSLCT 473 (628)
Q Consensus 398 ~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~----~IThvirG 473 (628)
|.+ |+ . .+. + -.+..+|-.--+.|-... +.++++-|
T Consensus 155 --~k~-------------r~----~------~~~----i-----------s~~ef~YPlLQaaDil~l~~~~~~~i~~gG 194 (432)
T 2jan_A 155 --IRR-------------RL----A------GEG----I-----------SYTEFSYLLLQANDYVELHRRHGCTLQIGG 194 (432)
T ss_dssp --HHH-------------HT----S------TTC----C-----------BHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred --Hhh-------------hh----c------CCC----c-----------chHHHHHHHHHHHHHHHHhccCCCcEEecc
Confidence 100 00 0 000 0 011333333333443344 78888889
Q ss_pred ccccccchhHHHHHHHhCCCCCceeeeeee-cCCCcccccccccccccccccCCCCCc---chhhHHHHHHcCCCHHHHH
Q 006869 474 LEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRRRGVTSTSIN 549 (628)
Q Consensus 474 ~e~~~~~~~q~~L~~aLg~~~P~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddP---r~~tl~~lr~~G~~peaI~ 549 (628)
.|-..+-..=.-|++.++...|.....|+| ..+|+||||+.++..| |=++ -...+.....+ .+-..+.
T Consensus 195 ~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI-------~L~d~~tsp~~i~qki~~-~~D~~v~ 266 (432)
T 2jan_A 195 ADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSL-------WLDPQMTSPYAWYQYFVN-TADADVI 266 (432)
T ss_dssp STTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBC-------BSSTTTSCHHHHHHHHHT-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeE-------EccCCCCCHHHHHHHHhc-CCchhHH
Confidence 886655554444566677666665666764 7789999999987323 3344 33455554444 4444566
Q ss_pred HHHHHc
Q 006869 550 AFVQGI 555 (628)
Q Consensus 550 ~fl~~l 555 (628)
+|+..+
T Consensus 267 ~~l~l~ 272 (432)
T 2jan_A 267 RYLRWF 272 (432)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666653
No 51
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=97.46 E-value=0.0007 Score=72.45 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=70.7
Q ss_pred cccCCCccccccCcHHHHHHhhhhcCCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecCC----cc---
Q 006869 247 IPFSDGSVLICCNTKEVLDKHLEVTGGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDTN----PE--- 319 (628)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDtD----~~--- 319 (628)
++|+-++. ..+|+..-+-..=.|.+=+. |||.|||||...+..+ ......+..+++=|-|.. +.
T Consensus 51 i~f~hRd~------d~il~~~e~gk~~~v~sG~~--PTG~lHLGhyv~~~~~-~~lq~~~~~~~~~IaD~ha~t~~~~~~ 121 (372)
T 3a04_A 51 IIFGHRDF------DKILEAKARGERVAVLTGFM--PSGKFHFGHKLTVDQL-IYLQKNGFKVFVAIADAEAFAVRRIGR 121 (372)
T ss_dssp SEEEEESH------HHHHHHHHTTCCCEEEEEEC--CCSCCBHHHHHHHHHH-HHHHHTTCEEEEEECHHHHHHTTCCCH
T ss_pred eeeeccCH------HHHHHHHHcCCCCEEEeCcC--CCcHhHHHHHHHHHHH-HHHHhCCCeEEEEEecchhhccCCCCC
Confidence 45666665 45554433333333555554 5899999999976544 444456777777777642 11
Q ss_pred -cccHHHHHHHHHHHHHcCCCCCC--ccCCcccHHHHHHHHHHHHHcCCccccCCCHHHHHH
Q 006869 320 -AEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 378 (628)
Q Consensus 320 -r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~~ 378 (628)
.....+...+..++-.+|++|++ +.+||++...+++.+..+ .|..+..+++.
T Consensus 122 ~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~~~~l~~~~-------~~~~~~~~~~~ 176 (372)
T 3a04_A 122 EEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTPYFRLIQLF-------SGKVTAAEMEA 176 (372)
T ss_dssp HHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHHHHHHHHHH-------TTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHHHHHHHHHH-------HhhhhHHHHhh
Confidence 11334444555666788999986 778999877777665443 35566665544
No 52
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=97.43 E-value=0.0002 Score=84.40 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=69.2
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHH--HcCCEEEEeeecCCcc------------------cc-------------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAK--ERGGYCYLRYDDTNPE------------------AE------------- 321 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar--~~~G~~iLRidDtD~~------------------r~------------- 321 (628)
+++==+|.|||.|||||+++.++.+.+|| ...|.-++..--+|.- +.
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~ 116 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQ 116 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHH
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHH
Confidence 45556899999999999999999999999 4578888877776620 00
Q ss_pred -cHHHHHHHHHHHHHcCCCCC--CccC--CcccHHHHHHHHHHHHHcCCccc
Q 006869 322 -KKEYIDHIEEIVQWMGWEPF--KITY--TSDYFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 322 -~~~~~~~I~~~L~wLGl~pd--~~~~--qSd~~~~~~e~a~~Li~~G~AY~ 368 (628)
..+|.+.|.+.++.||+..| ..++ ..+|.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYr 168 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYR 168 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEe
Confidence 35678899999999998644 4333 33344444455678999999985
No 53
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.0014 Score=70.12 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=59.2
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc-cc---ccHHHH-HHH
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-EA---EKKEYI-DHI 329 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~-~r---~~~~~~-~~I 329 (628)
.+.|+++++.. .-.+.+=|- |||.|||||...++.+|..-...|..+++=|-|- || .+ ...+.. ..+
T Consensus 21 ~~~l~~~l~~~~~~~vy~G~~--PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~ 98 (375)
T 2cyc_A 21 VENLRHLFEIGAPLQHYIGFE--ISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYF 98 (375)
T ss_dssp HHHHHHHHHHTCCCBEEEEEC--CCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCCCcEEEeCCC--CCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHH
Confidence 66787888653 334556665 5589999995556777777777777777766663 33 11 122333 334
Q ss_pred H----HHHHHcCCCCCC--ccCCcccHHH
Q 006869 330 E----EIVQWMGWEPFK--ITYTSDYFQE 352 (628)
Q Consensus 330 ~----~~L~wLGl~pd~--~~~qSd~~~~ 352 (628)
. .++..+|++|++ +.+||+....
T Consensus 99 ~~~~~~~~la~G~dp~k~~i~~qS~~~~~ 127 (375)
T 2cyc_A 99 KVGMEKSIEVMGGDPKKVEFVLASEILEK 127 (375)
T ss_dssp HHHHHHHHHHTTCCGGGSEEEETHHHHTB
T ss_pred HHHHHHHHHHhCCCccceEEEEcchhhhh
Confidence 4 778899999975 6789987653
No 54
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=97.39 E-value=0.00015 Score=86.08 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=66.6
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC----------------c-----c-------cccHH
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------P-----E-------AEKKE 324 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD----------------~-----~-------r~~~~ 324 (628)
+++==+|.|||.|||||+++.++...+||. ..|.-++..--+| + + ....+
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~ 130 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALE 130 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHH
Confidence 444558999999999999999999999994 4666666554444 1 0 12345
Q ss_pred HHHHHHHHHHHcCCC--CCCccCCcc--cHHHHHHHHHHHHHcCCccc
Q 006869 325 YIDHIEEIVQWMGWE--PFKITYTSD--YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 325 ~~~~I~~~L~wLGl~--pd~~~~qSd--~~~~~~e~a~~Li~~G~AY~ 368 (628)
+++.+.+.++.||+. |+..++..+ |.........+|.++|++|.
T Consensus 131 ~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr 178 (917)
T 1ffy_A 131 QIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK 178 (917)
T ss_dssp HHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEe
Confidence 678889999999994 777655554 22223344568999999884
No 55
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=97.31 E-value=0.00017 Score=86.14 Aligned_cols=94 Identities=21% Similarity=0.175 Sum_probs=65.0
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHH--cCCEEEEeeecCC-----------------------------------
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGYCYLRYDDTN----------------------------------- 317 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~--~~G~~iLRidDtD----------------------------------- 317 (628)
+++==+|.|||.|||||+++.++...+||. ..|.-+++.--.|
T Consensus 37 ~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~ 116 (967)
T 1wz2_A 37 YITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEIL 116 (967)
T ss_dssp BEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHH
T ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHH
Confidence 455558999999999999999999999993 4676666542221
Q ss_pred -----cccccHHHHHHHHHHHHHcCCC--CCCccCCcc----cHHHHHHHHHHHHHcCCccc
Q 006869 318 -----PEAEKKEYIDHIEEIVQWMGWE--PFKITYTSD----YFQELYELAVELIRRGHAYV 368 (628)
Q Consensus 318 -----~~r~~~~~~~~I~~~L~wLGl~--pd~~~~qSd----~~~~~~e~a~~Li~~G~AY~ 368 (628)
+......|.+.+.+.++.||+. |+..+...+ |.........+|.++|++|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr 178 (967)
T 1wz2_A 117 WTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK 178 (967)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEE
Confidence 1112335567889999999985 556655555 33333344568899999884
No 56
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.30 E-value=0.00034 Score=75.37 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=45.8
Q ss_pred CCCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEeeecC-------CcccccHHHHHHHHHHHHHcCCCCCC--ccCCccc
Q 006869 281 PEPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDY 349 (628)
Q Consensus 281 PsPtG-~LHIGharaa-l~n~l~Ar~~~G~~iLRidDt-------D~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~ 349 (628)
=.||| .|||||+..+ +.+| +-+..+..+++-|-|- .......++...+..++-.+|++|++ +..||+.
T Consensus 85 ~~PTg~~lHLGh~v~~~~~~~-lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~ 163 (395)
T 3i05_A 85 RGPSSESMHMGHLIPFMFTKW-LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDY 163 (395)
T ss_dssp ECCCSSCCBGGGSHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHH
T ss_pred ecCCCccchHHHHHHHHHHHH-HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHH
Confidence 36789 6999999988 6678 4444566666656653 11223445556677777788999986 4556655
Q ss_pred H
Q 006869 350 F 350 (628)
Q Consensus 350 ~ 350 (628)
.
T Consensus 164 ~ 164 (395)
T 3i05_A 164 M 164 (395)
T ss_dssp T
T ss_pred H
Confidence 4
No 57
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=97.25 E-value=0.0013 Score=71.75 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=57.6
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeec----C-Cc---ccccHHHHHHH
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD----T-NP---EAEKKEYIDHI 329 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidD----t-D~---~r~~~~~~~~I 329 (628)
.+.+.+.++.. .-.+.+=| -|| |.|||||+..++ .+|+ -+.+|...++=|-| + |+ .....+.+..+
T Consensus 90 ~~~l~~~l~~g~~~~vy~G~--dPTag~LHLGh~v~~~~l~~l-Q~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~ 166 (432)
T 2ip1_A 90 FTKILDLYEQGKPFFLYTGR--GPSSDSMHLGHMIPFVFTKWL-QEVFDVPLVIELTDDEKFLFKHKLTINDVKNFAREN 166 (432)
T ss_dssp HHHHHHHHHHTCCCEEEEEE--CCCSSCCBGGGHHHHHHHHHH-HHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEee--cCCCCCccHHHHHHHHHHHHH-HHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHH
Confidence 33455556542 22344444 567 789999999876 6774 33467766666666 2 22 12344555566
Q ss_pred HHHHHHcCCCCCC--ccCCcccH-HHHHHHHH
Q 006869 330 EEIVQWMGWEPFK--ITYTSDYF-QELYELAV 358 (628)
Q Consensus 330 ~~~L~wLGl~pd~--~~~qSd~~-~~~~e~a~ 358 (628)
..++-.+|++|++ +.+||+.. ..|++.+-
T Consensus 167 ~~~~lA~GlDp~k~~i~~nSd~~~~~~~~~~~ 198 (432)
T 2ip1_A 167 AKDIIAVGFDPKNTFIFSDLQYMGGAFYETVV 198 (432)
T ss_dssp HHHHHTTTCCGGGEEEEEHHHHCSHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEEeCchhhhhhHHHHHH
Confidence 6777778999875 67888865 23444443
No 58
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.25 E-value=0.00091 Score=72.29 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=46.8
Q ss_pred CCCC-cCchhHHHHH-HHHHHHHHHcCCEEEEeeecCC-------cccccHHHHHHHHHHHHHcCCCCCC--ccCCcccH
Q 006869 282 EPNG-YLHIGHAKAM-FVDFGLAKERGGYCYLRYDDTN-------PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 350 (628)
Q Consensus 282 sPtG-~LHIGharaa-l~n~l~Ar~~~G~~iLRidDtD-------~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~ 350 (628)
.||| .|||||...+ +.+| +-+.+|..+++-|-|.- ......++...+..++-.+|++|++ +..||+..
T Consensus 109 ~PTg~~lHLGh~v~~~~~~~-lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~ 187 (406)
T 3tze_A 109 GPSSKTMHIGHTIPFLLCKY-MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEAS 187 (406)
T ss_dssp CCCSSCCBGGGHHHHHHHHH-HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHG
T ss_pred CCCCCcccHHHHHHHHHHHH-HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhH
Confidence 6788 7999999988 6788 45556777777676631 1123345556677777788999976 45666544
Q ss_pred H
Q 006869 351 Q 351 (628)
Q Consensus 351 ~ 351 (628)
.
T Consensus 188 ~ 188 (406)
T 3tze_A 188 H 188 (406)
T ss_dssp G
T ss_pred H
Confidence 3
No 59
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.21 E-value=0.0017 Score=68.87 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc----ccccHHHHHHHH
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIE 330 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~----~r~~~~~~~~I~ 330 (628)
.+-|++.|+.. .-.+.+=|-| ||.|||||..-++.++..-...|..++.=|-|. |+ .....+....+.
T Consensus 28 ~~~L~~~L~~~~~~~vy~G~~P--Tg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~ 105 (348)
T 2j5b_A 28 LDRLKQLVDSGRIFTAYNGFEP--SGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFI 105 (348)
T ss_dssp HHHHHHHHHHTCCEEEEEEECC--CSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeccCC--CCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHH
Confidence 56677888762 2234555555 589999995555677766666677777777663 43 223445666777
Q ss_pred HHHHHcCCCCCC--ccCCcccH
Q 006869 331 EIVQWMGWEPFK--ITYTSDYF 350 (628)
Q Consensus 331 ~~L~wLGl~pd~--~~~qSd~~ 350 (628)
..+-.+|++|++ +.+||+.+
T Consensus 106 ~~~la~Gldp~k~~i~~qs~~~ 127 (348)
T 2j5b_A 106 EVFKACGINLDGTRFIWASEFI 127 (348)
T ss_dssp HHHHHTTCCGGGEEEEEHHHHH
T ss_pred HHHHHhcCCccceEEEECCHhh
Confidence 777788999975 67888853
No 60
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=97.16 E-value=0.00082 Score=73.48 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=64.6
Q ss_pred HHHHHhhhhcCCeeEEEeCCCCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeecC-----C---cccccHHHHHHHHH
Q 006869 262 EVLDKHLEVTGGNVLTRFPPEPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----N---PEAEKKEYIDHIEE 331 (628)
Q Consensus 262 ~~~~~h~~~~~~~v~tRFaPsPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidDt-----D---~~r~~~~~~~~I~~ 331 (628)
+.+.+.++. +++++.=-.=.|| |.|||||+..++ .+| +-+..+..+++-|.|- . ......+....+..
T Consensus 80 ~~ll~~l~~-g~p~~vytG~dPTagsLHLGH~v~~~~l~~-lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~ 157 (451)
T 3foc_A 80 EEFLSYYEK-GHPIYIYTGRGPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIK 157 (451)
T ss_dssp HHHHHHHHT-TCCEEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCeEEEecCCCCCCCccHHHHHHHHHHHH-HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHH
Confidence 344444543 3333222233678 889999999887 788 4455677778878773 1 11233445556666
Q ss_pred HHHHcCCCCCC--ccCCcccHH--HHHHHHHHHHHcCCccccCCCHHHHHHH
Q 006869 332 IVQWMGWEPFK--ITYTSDYFQ--ELYELAVELIRRGHAYVDHQTPEEIKEY 379 (628)
Q Consensus 332 ~L~wLGl~pd~--~~~qSd~~~--~~~e~a~~Li~~G~AY~C~cs~eei~~~ 379 (628)
++-.+|++|++ +..||+... .|++.+..|- |+.|..++.+.
T Consensus 158 ~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~-------r~~Tv~~m~~~ 202 (451)
T 3foc_A 158 DIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD-------RMLPISQLRAS 202 (451)
T ss_dssp HHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH-------HTCCHHHHHHH
T ss_pred HHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH-------hhCCHHHHHhh
Confidence 66677999875 667887753 3455544432 34455555543
No 61
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.12 E-value=0.0041 Score=66.49 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=100.8
Q ss_pred HHHHHHhhhhc-CCeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Cc-cc---ccHHHHHHHH
Q 006869 261 KEVLDKHLEVT-GGNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NP-EA---EKKEYIDHIE 330 (628)
Q Consensus 261 ~~~~~~h~~~~-~~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~-~r---~~~~~~~~I~ 330 (628)
.+.|++.|+.. .-.+.+=|. |||.|||||.--..+++..-...|..+++=|-|. || .+ ........+.
T Consensus 44 ~~~L~~~L~~~~~~~iy~G~~--PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~ 121 (373)
T 3vgj_A 44 PDELRVKLLLKRKLICYDGFE--PSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFI 121 (373)
T ss_dssp HHHHHHHHHHCSSCEEEEEEC--CCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEeCCC--CCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHH
Confidence 56677777652 223455555 5689999993211122222334566666655553 33 11 2234455666
Q ss_pred HHHHHcCCCCCC--ccCCcccHHHHHHHH-HHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHhhccc
Q 006869 331 EIVQWMGWEPFK--ITYTSDYFQELYELA-VELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDMRNGR 407 (628)
Q Consensus 331 ~~L~wLGl~pd~--~~~qSd~~~~~~e~a-~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m~~G~ 407 (628)
..+..+|++|++ +.+||+....+-+.. ..+++-+. +.+..++..... + .|+
T Consensus 122 ~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~----~~tv~rm~~~~~--~--------------------~~r 175 (373)
T 3vgj_A 122 EVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISR----SFNINRMKRCLK--I--------------------MGR 175 (373)
T ss_dssp HHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHT----TSBHHHHHTTGG--G--------------------GTC
T ss_pred HHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHc----cCcHHHHHhhhH--H--------------------Hhh
Confidence 788889999986 678888652211111 11111111 223222221100 0 000
Q ss_pred ccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhHHHHH
Q 006869 408 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASYFWLL 487 (628)
Q Consensus 408 ~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q~~L~ 487 (628)
. . . + + .-.+..+|-.--+.|-.+.+.++++.|.|-..+-..=.-|+
T Consensus 176 ---------~--~--~------~--------------~-~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla 221 (373)
T 3vgj_A 176 ---------S--E--G------E--------------E-NYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYC 221 (373)
T ss_dssp ---------C--T--T------S--------------C-CBTHHHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHH
T ss_pred ---------h--c--c------C--------------C-CChHHHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHH
Confidence 0 0 0 0 0 00124445444555555678899999987544433223345
Q ss_pred HHhCCC-CCceeeeeee-cC-CCc-cccccccc
Q 006869 488 HALGLY-QPYVWEYSRL-NV-SNT-VMSKRKLN 516 (628)
Q Consensus 488 ~aLg~~-~P~~~~~~~L-n~-~g~-KLSKR~~~ 516 (628)
..+|.. .|...+.+++ .+ +|+ ||||+.++
T Consensus 222 ~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~ 254 (373)
T 3vgj_A 222 DIKKIKKKPVILSHGMLPGLLEGQEKMSKSDEN 254 (373)
T ss_dssp HHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTT
T ss_pred HHhCCCCCceEEeCCeeecCCCCCCCCcCCCCC
Confidence 667764 6776677764 54 785 99999853
No 62
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=97.11 E-value=0.0011 Score=71.10 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=56.7
Q ss_pred CCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-------CcccccHHHHHHHHHHHHHcCCCCCC--ccCCcccHHH
Q 006869 282 EPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYFQE 352 (628)
Q Consensus 282 sPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-------D~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~~~ 352 (628)
.|||.|||||...++.+|..-.. +..+++=|-|. |++. ..+....+..++-.+|++|++ +++||+..+
T Consensus 43 ~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~~~~~~~-lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~- 119 (388)
T 3prh_A 43 QPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITVPQDRLE-LRKNIRNLAALYLAVGLDPEKATLFIQSEVPA- 119 (388)
T ss_dssp CCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTSCCCHHH-HHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTH-
T ss_pred CCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeecCCCHHH-HHHHHHHHHHHHHHhCCChhHeEEEecccccc-
Confidence 57799999999988888765443 56666666553 3332 344555666777789999986 778999763
Q ss_pred HHHHHHHHHHcCCccccCCCHHHHH
Q 006869 353 LYELAVELIRRGHAYVDHQTPEEIK 377 (628)
Q Consensus 353 ~~e~a~~Li~~G~AY~C~cs~eei~ 377 (628)
+.+++-. +.|..+..+++
T Consensus 120 ~~el~w~-------l~~~~~~~~L~ 137 (388)
T 3prh_A 120 HAQAGWM-------MQCVAYIGELE 137 (388)
T ss_dssp HHHHHHH-------HHTTSCHHHHH
T ss_pred hHHHHHH-------HHhhccHHHHH
Confidence 3443322 34666665544
No 63
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.03 E-value=0.0061 Score=70.09 Aligned_cols=191 Identities=16% Similarity=0.149 Sum_probs=102.6
Q ss_pred cHHHHHHhhhhcC-CeeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Ccc----cccHHHHHHH
Q 006869 260 TKEVLDKHLEVTG-GNVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE----AEKKEYIDHI 329 (628)
Q Consensus 260 ~~~~~~~h~~~~~-~~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~----r~~~~~~~~I 329 (628)
+.+-|++.|+... -.|.+=| .|||.|||||.--..+++..-...|..+++=|-|. ||. .........+
T Consensus 27 ~~~eL~~~L~~~~~~~vy~G~--~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~ 104 (690)
T 3p0j_A 27 QESELRNLIEKKPLIRCYDGF--EPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYL 104 (690)
T ss_dssp CHHHHHHHHHHCTTEEEEEEE--CCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCceEEeee--cCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHH
Confidence 3566777776422 2344444 56789999993221223333334565666655553 221 1233444566
Q ss_pred HHHHHHcCCCCCC--ccCCcccHHH----HHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHHhHHHHHh
Q 006869 330 EEIVQWMGWEPFK--ITYTSDYFQE----LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLKLFEDM 403 (628)
Q Consensus 330 ~~~L~wLGl~pd~--~~~qSd~~~~----~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~l~~f~~m 403 (628)
...+..+|++|++ +.+||+.+.. |+.+...+ .+++|..++... + +..
T Consensus 105 ~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i-------~~~~tv~~m~~~-----~------~~~--------- 157 (690)
T 3p0j_A 105 IEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDI-------GRQNTIARIKKC-----C------TIM--------- 157 (690)
T ss_dssp HHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHH-------HHTSCHHHHHTT-----C------------------
T ss_pred HHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHH-------HhhCCHHHHHhh-----h------hhh---------
Confidence 7778889999985 6788885532 23332222 123343333210 0 000
Q ss_pred hcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccCCcceeecCccccccchhH
Q 006869 404 RNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIENITHSLCTLEFETRRASY 483 (628)
Q Consensus 404 ~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~~IThvirG~e~~~~~~~q 483 (628)
| |.. .+ + ..| ..+|-.--+.|-.+.+.+++..|.|-..+-..=
T Consensus 158 --~---------r~~----------~~-----i------~~g-----~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~ 200 (690)
T 3p0j_A 158 --G---------KTE----------GT-----L------TAA-----QVLYPLMQCCDIFFLKADICQLGLDQRKVNMLA 200 (690)
T ss_dssp -------------------------CC-----C------CCS-----CSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHH
T ss_pred --h---------hcc----------CC-----C------chh-----hHhhHHHHHHHHHhhCCCEEeccccHHHHHHHH
Confidence 0 000 00 0 012 455555555555667889999998865443333
Q ss_pred HHHHHHhCCC-CCceeeeeee-cC-CCc-cccccccc
Q 006869 484 FWLLHALGLY-QPYVWEYSRL-NV-SNT-VMSKRKLN 516 (628)
Q Consensus 484 ~~L~~aLg~~-~P~~~~~~~L-n~-~g~-KLSKR~~~ 516 (628)
.-|+..+|.. .|...+.+++ .+ +|+ ||||+.++
T Consensus 201 Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~ 237 (690)
T 3p0j_A 201 REYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPD 237 (690)
T ss_dssp HHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGG
T ss_pred HHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCC
Confidence 3355667764 6766666764 56 775 99999874
No 64
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=97.00 E-value=0.028 Score=60.94 Aligned_cols=218 Identities=16% Similarity=0.189 Sum_probs=117.9
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Ccc-----c------ccH
Q 006869 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 323 (628)
Q Consensus 261 ~~~~~~h~~~~~~~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~-----r------~~~ 323 (628)
++-|++.|+...-.+.+=| -|||. |||||+. ++.++..-...|-.++.=|-|- ||. | +..
T Consensus 21 ~~~L~~~L~~~~~~iy~G~--dPTg~sLHlGh~v-~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~ 97 (420)
T 1jil_A 21 EQGIEDLLNKEQVTLYCGA--DPTADSLHIGHLL-PFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVD 97 (420)
T ss_dssp HHHHHHHHHHSCCEEEEEE--CCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEee--CCCCCCccHHHHH-HHHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHH
Confidence 4567788864333344444 56799 9999988 5777766666677766666553 442 1 233
Q ss_pred HHHHHHHHHHHHcCCCC---CC--ccCCcccHHH--HHHHHHHHHHcCCccccCCCHHHHHHHhhccCCCCCCCCCHHHH
Q 006869 324 EYIDHIEEIVQWMGWEP---FK--ITYTSDYFQE--LYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIAES 396 (628)
Q Consensus 324 ~~~~~I~~~L~wLGl~p---d~--~~~qSd~~~~--~~e~a~~Li~~G~AY~C~cs~eei~~~r~~~y~~~~R~~~~ee~ 396 (628)
+....|...+..+ ++| ++ +..||+.... +.++ |.. +-|+.|..++... + +...
T Consensus 98 ~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~---l~~----~~~~~tv~~m~~~-----~------~~k~- 157 (420)
T 1jil_A 98 KNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISF---LRD----YGKHVGVNYMLGK-----D------SIQS- 157 (420)
T ss_dssp HHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHH---HHH----TGGGCCHHHHHTC-----G------GGHH-
T ss_pred HHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHH---HHH----HhccccHHHHhcc-----h------hhhh-
Confidence 4556666655444 555 43 5567665432 2222 211 2344454444321 0 0000
Q ss_pred hHHHHHhhcccccCCCeEEEEEecCCCCCCCCCceEEEEEecCCCCCCCCcccccccccchhhhhhccC----Ccceeec
Q 006869 397 LKLFEDMRNGRIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSIE----NITHSLC 472 (628)
Q Consensus 397 l~~f~~m~~G~~~~g~~~lRlk~d~~~~~~~~~D~Vl~R~~~~~h~~~gd~~~~~PtY~fa~~VDD~~~----~IThvir 472 (628)
|+ . . +-. .+-.+|..--+.|-.+. +.++++-
T Consensus 158 -------------------r~--~---~--------------------~is-~~ef~YplLQaaD~l~l~~~~~~~i~~g 192 (420)
T 1jil_A 158 -------------------RL--E---H--------------------GIS-YTEFTYTILQAIDFGHLNRELNCKIQVG 192 (420)
T ss_dssp -------------------HH--T---T--------------------TCC-HHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred -------------------hc--c---C--------------------Ccc-hHHHHHHHHHHHHHHHHhccCCCcEEec
Confidence 00 0 0 000 11233333333443344 7888888
Q ss_pred CccccccchhHHHHHHHh-CCCCCceeeeeee-cCCCcccccccccccccccccCCCCCc---chhhHHHHHHcCCCHHH
Q 006869 473 TLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRRRGVTSTS 547 (628)
Q Consensus 473 G~e~~~~~~~q~~L~~aL-g~~~P~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddP---r~~tl~~lr~~G~~pea 547 (628)
|.|-..+-..=.-|++.+ +...|.....|+| ..+|+||||+.++. | |=++ -...+.....+ .+-..
T Consensus 193 G~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~~ki~~-~~D~~ 263 (420)
T 1jil_A 193 GSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGA-V-------WLDAEKTSPYEFYQFWIN-QSDED 263 (420)
T ss_dssp EGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSSB-C-------BSSTTTSCHHHHHHHHHT-CCHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCCe-E-------ecCCCCCCHHHHHHHHhc-CCchh
Confidence 887655544444456677 7666666666764 67899999999763 2 4444 34455555544 55455
Q ss_pred HHHHHHHc
Q 006869 548 INAFVQGI 555 (628)
Q Consensus 548 I~~fl~~l 555 (628)
+.+|+..+
T Consensus 264 v~~~l~~~ 271 (420)
T 1jil_A 264 VIKFLKYF 271 (420)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 65
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=96.90 E-value=0.0088 Score=64.89 Aligned_cols=82 Identities=7% Similarity=0.060 Sum_probs=51.1
Q ss_pred CcceeecCccccccchhHHHHHHHh-CCCCCceeeeeee-cCCCcccccccccccccccccCCCCCc---chhhHHHHHH
Q 006869 466 NITHSLCTLEFETRRASYFWLLHAL-GLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVDGWDDP---CLMTLAGLRR 540 (628)
Q Consensus 466 ~IThvirG~e~~~~~~~q~~L~~aL-g~~~P~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~~wddP---r~~tl~~lr~ 540 (628)
+.++++-|.|-..+-..=.-|++.+ +...|.....|+| ..+|+||||+.++. | |=++ -...+.....
T Consensus 185 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~na-I-------~L~d~~tsp~~i~qki~ 256 (419)
T 2ts1_A 185 GCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGT-I-------WLDKEKTSPYEFYQFWI 256 (419)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSCC-C-------BSSTTTSCHHHHHHHHH
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCCe-E-------ecCCCCCCHHHHHHHHh
Confidence 7888888887655544444456677 7666666666764 67899999998763 2 4444 3455555555
Q ss_pred cCCCHHHHHHHHHHcC
Q 006869 541 RGVTSTSINAFVQGIG 556 (628)
Q Consensus 541 ~G~~peaI~~fl~~lG 556 (628)
+ .+-..+.+|+..+-
T Consensus 257 ~-~~D~~v~~~l~l~t 271 (419)
T 2ts1_A 257 N-TDDRDVIRYLKYFT 271 (419)
T ss_dssp T-CCHHHHHHHHHHHC
T ss_pred c-CCchhHHHHHHHHH
Confidence 4 55555666766543
No 66
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=96.69 E-value=0.01 Score=62.98 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=55.7
Q ss_pred cccccchhhhhhccC----CcceeecCccccccchhHHHHHHHhCCCCCceeeeeee-cCCCcccccccccccccccccC
Q 006869 451 YPSYDYAHCIVDSIE----NITHSLCTLEFETRRASYFWLLHALGLYQPYVWEYSRL-NVSNTVMSKRKLNFLVTNKYVD 525 (628)
Q Consensus 451 ~PtY~fa~~VDD~~~----~IThvirG~e~~~~~~~q~~L~~aLg~~~P~~~~~~~L-n~~g~KLSKR~~~~lv~~~~v~ 525 (628)
..+|-.--+.|-.+. +.++++.|.|-..+-..=.-|++.++...|.....++| ..+|+||||+.++. |
T Consensus 191 ~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~~ldG~KMSKS~~na-I------ 263 (356)
T 2pid_A 191 EFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLITSTTGAKLGKSAGNA-V------ 263 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCCC-------------C-C------
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcccccCCCCCe-e------
Confidence 444444444444455 89999999886655554445567788766766666764 67899999998763 2
Q ss_pred CCCCc---chhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHHhhh
Q 006869 526 GWDDP---CLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIREEL 577 (628)
Q Consensus 526 ~wddP---r~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir~~~ 577 (628)
|=++ -...+.....+ .+-..+.+|+..+-. .+...++++.+++.
T Consensus 264 -~L~d~~tsp~~i~~ki~~-~~D~~v~~~l~~~t~------~~~~~i~~l~~~~~ 310 (356)
T 2pid_A 264 -WLNRDKTSPFELYQFFVR-QPDDSVERYLKLFTF------LPLPEIDHIMQLHV 310 (356)
T ss_dssp -BSSTTTSCHHHHHHHHHT-CCHHHHHHHHHHHCC------CCHHHHHHHHHHHH
T ss_pred -eccCCCCCHHHHHHHHHc-CCchhHHHHHHHHHc------CCchHHHHHHHHHh
Confidence 2233 23455555554 555556777775432 12344555555443
No 67
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.68 E-value=0.031 Score=58.49 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=52.2
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeecC-----Ccc-----c------ccH
Q 006869 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDDT-----NPE-----A------EKK 323 (628)
Q Consensus 261 ~~~~~~h~~~~~~~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidDt-----D~~-----r------~~~ 323 (628)
.+.|.+.++...-.|.+=| .|||. |||||.. ++.++..-...|..++.=|-|. ||. | ...
T Consensus 22 ~~~l~~~l~~~~~~vy~G~--~PTg~slHlGh~l-~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~ 98 (322)
T 2yxn_A 22 EEALAERLAQGPIALVCGF--DPTADSLHLGHLV-PLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQ 98 (322)
T ss_dssp HHHHHHHHHHSCCEEEEEE--CCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEee--cCCCCcccHHHHH-HHHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHH
Confidence 5667777773333444545 56799 9999988 5777777777777777766653 331 2 233
Q ss_pred HHHHHHHHHHH-H--cCCCCCC--ccCCccc
Q 006869 324 EYIDHIEEIVQ-W--MGWEPFK--ITYTSDY 349 (628)
Q Consensus 324 ~~~~~I~~~L~-w--LGl~pd~--~~~qSd~ 349 (628)
+..+.|.+.+. | +|++|++ +..||+.
T Consensus 99 ~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w 129 (322)
T 2yxn_A 99 EWVDKIRKQVAPFLDFDCGENSAIAANNYDW 129 (322)
T ss_dssp HHHHHHHHHHGGGSCSSSGGGCCEEEETHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccceEEEecchh
Confidence 34444444333 2 3777765 5667764
No 68
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=96.66 E-value=0.0035 Score=69.10 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=45.6
Q ss_pred CCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeec-C----C--cccccHHHHHHHHHHHHHcCCCCCC--ccCCcccH
Q 006869 282 EPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDD-T----N--PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 350 (628)
Q Consensus 282 sPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidD-t----D--~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~ 350 (628)
-|| |.|||||+..++ .+|+ -+.+|...++=|-| + | ......++...+..++-.+|++|++ +..||+..
T Consensus 163 dPTag~LHLGh~v~~~~~~~l-Q~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~ 241 (477)
T 1r6t_A 163 GPSSEAMHVGHLIPFIFTKWL-QDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM 241 (477)
T ss_dssp CCCTTCCBGGGHHHHHHHHHH-HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHG
T ss_pred cCCCCCccHHHHHHHHHHHHH-HHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEechhhh
Confidence 577 889999999987 5774 33366654444444 2 1 1223455556667777778999985 67888865
Q ss_pred H
Q 006869 351 Q 351 (628)
Q Consensus 351 ~ 351 (628)
.
T Consensus 242 ~ 242 (477)
T 1r6t_A 242 G 242 (477)
T ss_dssp G
T ss_pred c
Confidence 4
No 69
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=96.58 E-value=0.022 Score=62.58 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=116.8
Q ss_pred HHHHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHH-HHhhCCCCC---------CCchhHHH
Q 006869 11 EILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPTNA---------LVHRPTLL 79 (628)
Q Consensus 11 ~~~~~f~-~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~-latk~~~~~---------~~~r~~l~ 79 (628)
+..+.|. ..||++.-|.-++.++.++.-+++++.. +. -++...+.|.+ |...++... ..+...|+
T Consensus 305 ~~~~R~~~eygls~~dA~~L~~~~~~a~~fe~~~~~-~~---~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li 380 (482)
T 3al0_B 305 EKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKV-VN---RPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLF 380 (482)
T ss_dssp HHHHHHHHHHSCCHHHHHHHTSSHHHHHHHHHHHHH-SC---CHHHHHHHHHTHHHHHTTTTTCCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHh-cC---CHHHHHHHHHHHHHHHHHHcCCCHhhcCCCHHHHHHHH
Confidence 3445555 6999999999999999988888888664 21 36777777766 666555321 34677899
Q ss_pred HHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHH-HHHHHHHHHHHhhHhHHHhhc--cccchhhhH
Q 006869 80 LYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSE-DIELTVNEVFEENKNTILELR--YRTNVGDLF 156 (628)
Q Consensus 80 ~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E-~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll 156 (628)
..|.+|+|.+. .....+.-+-.. .-+.++.-++.|... +|.+ +|+++|+++|++|.+.+.+-| =...+|.+|
T Consensus 381 ~li~~g~Is~~-~ak~vl~~~~~~---~~~p~~IIe~~gl~q-iSDe~el~~iV~evIa~np~~v~~~k~Gk~k~~G~lm 455 (482)
T 3al0_B 381 KLMDEGKISIK-IAKEIFPEVFET---GKMPSQIVEEKGLTQ-INDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFV 455 (482)
T ss_dssp HHHTTTSSCTT-HHHHSHHHHHHH---CCCHHHHHHHHTCCC-CCCSSCHHHHHHHHHHTCHHHHHHHTTCCTTSTHHHH
T ss_pred HHHHcCCccHH-HHHHHHHHHHhc---CCCHHHHHHHhCCcc-CCcHHHHHHHHHHHHHhChHHHHHHhcCCHHHHHHHH
Confidence 99999999985 445555554433 357899999999764 7877 999999999999988666522 224589999
Q ss_pred HHHHhhCC-CCChhhhHHHHHHH
Q 006869 157 AHVRKRLP-WADPKIVKQLIDAR 178 (628)
Q Consensus 157 ~~vr~~Lk-WAd~~~vK~~vd~~ 178 (628)
|+|.+..+ =|||+.|.+.|.+.
T Consensus 456 GqVMk~tkGkADp~~V~~llke~ 478 (482)
T 3al0_B 456 GYVMRETKGKANPELTNRIIQKL 478 (482)
T ss_dssp HHHHHTTSSCSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 99977643 58998888776644
No 70
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=96.54 E-value=0.038 Score=60.78 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=117.1
Q ss_pred HHHHHH-HhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHH-HHhhCCC---------CCCCchhHHH
Q 006869 11 EILELF-LKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYT-VATKYPT---------NALVHRPTLL 79 (628)
Q Consensus 11 ~~~~~f-~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~-latk~~~---------~~~~~r~~l~ 79 (628)
+..+.| ...||++.-|.-++.++.++.-+++++... .-++..++.|.+ |...++. -...+...|+
T Consensus 298 ~k~~R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~~----~~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li 373 (483)
T 3ip4_B 298 ERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHG----ADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMI 373 (483)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTT----CCHHHHHHHHHTHHHHHHHHTTCCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHhhCCCCHHhcCCCHHHHHHHH
Confidence 344555 468999999999999988888887776532 135666665533 3322221 1245778899
Q ss_pred HHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHh--hccccchhhhHH
Q 006869 80 LYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILE--LRYRTNVGDLFA 157 (628)
Q Consensus 80 ~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~--~ry~~n~g~ll~ 157 (628)
..|.+|+|.+ .....-+..+-.. .-+.++.-++-|...+=.+++|+++|.++|++|.+.+.+ .+=..-+|-|+|
T Consensus 374 ~li~~g~Is~-~~ak~vl~~~~~~---~~~p~~iVee~GL~qisD~~eLe~iV~eVIa~np~~v~~~k~GK~ka~gfLVG 449 (483)
T 3ip4_B 374 KLIEDGTMSS-KIAKKVFPELAAK---GGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVG 449 (483)
T ss_dssp HHHHHTSSCH-HHHHHHHHHHHHH---CCCHHHHHHTTTCCCBCCHHHHHHHHHHHHHHCHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHcCCccH-HHHHHHHHHHHhc---CCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHCHHHHHHHHccCHHHHHHHHH
Confidence 9999999986 4455566655443 357899999999887556669999999999999887753 222334777888
Q ss_pred HHHhhC-CCCChhhhHHHHHHHHHHhcC
Q 006869 158 HVRKRL-PWADPKIVKQLIDARMYELLG 184 (628)
Q Consensus 158 ~vr~~L-kWAd~~~vK~~vd~~~~~llg 184 (628)
+|=+.. -=|||+.|.+.+.+.+.+.|.
T Consensus 450 QVMK~tkGKAdP~~VnelL~e~L~~~~~ 477 (483)
T 3ip4_B 450 QIMKASKGQANPQLVNQLLKQELDKRLE 477 (483)
T ss_dssp HHHHHTTSCBCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhHHh
Confidence 874443 359999999999888776653
No 71
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=96.41 E-value=0.0078 Score=65.63 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=45.6
Q ss_pred CCC-CcCchhHHHHHH-HHHHHHHHcCCEEEEeeecC-----C--cccccHHHHHHHHHHHHHcCCCCCC--ccCCcccH
Q 006869 282 EPN-GYLHIGHAKAMF-VDFGLAKERGGYCYLRYDDT-----N--PEAEKKEYIDHIEEIVQWMGWEPFK--ITYTSDYF 350 (628)
Q Consensus 282 sPt-G~LHIGharaal-~n~l~Ar~~~G~~iLRidDt-----D--~~r~~~~~~~~I~~~L~wLGl~pd~--~~~qSd~~ 350 (628)
-|| |.|||||+..++ .+|+ -+.+|...++-|-|- | ......++...+..++-.+|++|++ +..||+..
T Consensus 116 dPTag~LHLGh~v~~~~~~~l-Q~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~ 194 (437)
T 1r6u_A 116 GPSSEAMHVGHLIPFIFTKWL-QDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM 194 (437)
T ss_dssp CCCSSCCBHHHHHHHHHHHHH-HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHG
T ss_pred cCCCCCccHHHHHHHHHHHHH-HHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEechhhh
Confidence 577 789999999887 5664 333676655555542 1 1223445555666777778999875 67888865
Q ss_pred H
Q 006869 351 Q 351 (628)
Q Consensus 351 ~ 351 (628)
.
T Consensus 195 ~ 195 (437)
T 1r6u_A 195 G 195 (437)
T ss_dssp G
T ss_pred h
Confidence 4
No 72
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=96.32 E-value=0.024 Score=60.96 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHHHHhhhhcCCeeEEEeCCCCCCc-CchhHHHHHHHHHHHHHHcCCEEEEeeec
Q 006869 261 KEVLDKHLEVTGGNVLTRFPPEPNGY-LHIGHAKAMFVDFGLAKERGGYCYLRYDD 315 (628)
Q Consensus 261 ~~~~~~h~~~~~~~v~tRFaPsPtG~-LHIGharaal~n~l~Ar~~~G~~iLRidD 315 (628)
.+.|++.++...-.+.+=| -|||. |||||+. ++.++..-...|..++.=|-|
T Consensus 53 ~e~l~~ll~~~~~~vy~G~--dPTg~sLHlGhlv-~l~~l~~lQ~~G~~~~~lIgD 105 (392)
T 1y42_X 53 KEHIAELMRTRRIGAYVGI--DPTAPSLHVGHLL-PLMPLFWMYLEGYKAFTLIGG 105 (392)
T ss_dssp HHHHHHHHHHCCCEEEEEE--CCCSSSCBGGGHH-HHHHHHHHHHHTCEEEEEECT
T ss_pred HHHHHHHHcCCCCEEEEee--cCCCCCccHHHHH-HHHHHHHHHHcCCcEEEEEcC
Confidence 5577777764444444555 56799 9999999 577776666666666665554
No 73
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=95.74 E-value=0.012 Score=68.93 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=50.6
Q ss_pred ceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHHHH
Q 006869 496 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYHIR 574 (628)
Q Consensus 496 ~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ir 574 (628)
.+|-|++ ++.+|+|||||+|+. .+...+.++ |.++++|.||++.+-...+..++...+++.++
T Consensus 577 ~v~~hg~vl~~~G~KMSKS~GNv---------------V~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~ 640 (821)
T 1ile_A 577 NVICHGLILDEKGQKMSKSKGNV---------------VDPWDIIRK-FGADALRWYIYVSAPPEADRRFGPNLVRETVR 640 (821)
T ss_dssp EEEEECCEECTTSSCCCTTTTCC---------------CCHHHHHTT-TCHHHHHHHHHHHSCSSSCEECCHHHHHHHHH
T ss_pred eEEEEeeEECCCCCCCCccCCCC---------------CCHHHHHHH-hCHHHHHHHHHhCCCCCCCcEecHHHHHHHHH
Confidence 4677887 567999999999983 577888887 99999999999877444455677777777545
Q ss_pred hhhc
Q 006869 575 EELN 578 (628)
Q Consensus 575 ~~~~ 578 (628)
++++
T Consensus 641 ~~~~ 644 (821)
T 1ile_A 641 DYFL 644 (821)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 4443
No 74
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=95.14 E-value=0.053 Score=59.58 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=69.0
Q ss_pred HHHHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHH-HHHhhCC---------CCCCCchhHHH
Q 006869 11 EILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLY-TVATKYP---------TNALVHRPTLL 79 (628)
Q Consensus 11 ~~~~~f~-~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy-~latk~~---------~~~~~~r~~l~ 79 (628)
+..+.|. ..||++.-|.-++.++.++.-+++++.... -++...+.|. .|...++ +-...+...|+
T Consensus 301 ~~~~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~~----~~k~~anw~~~el~~~ln~~~~~i~~~~i~p~~la~li 376 (478)
T 3h0l_B 301 QRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFK----EPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAELV 376 (478)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSC----CHHHHHHHHHHTHHHHHHHHTCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhCCCCHhhcCCCHHHHHHHH
Confidence 3445554 689999999999999999998888886521 2455555544 2322111 11245788999
Q ss_pred HHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhHH
Q 006869 80 LYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFA 157 (628)
Q Consensus 80 ~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~ 157 (628)
..|.+|+|.+ .....-+..+-.. .-+.++.-++.|....=.+++|++.|+++|++|.+.+.+-| =...+|.+||
T Consensus 377 ~li~~g~Is~-~~ak~vl~~~~~~---~~~p~eIVee~gL~qisD~~el~~iV~evI~~np~~v~~~~~Gk~k~~g~lvG 452 (478)
T 3h0l_B 377 KLIKEKVIST-KIGKEVIKEMVET---GKTPSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVG 452 (478)
T ss_dssp HHHHTTSSCH-HHHHHHHHHHHHH---CCCHHHHHHHHCC----------------------------------------
T ss_pred HHHHcCCccH-HHHHHHHHHHHhc---CCCHHHHHHHcCCccCCCHHHHHHHHHHHHHhChHHHHHHHccCHHHHHHHHH
Confidence 9999999986 4455566655443 25788999999987744469999999999999887655222 1223667777
Q ss_pred HHHhhC-CCCChhhhHHHHHHHH
Q 006869 158 HVRKRL-PWADPKIVKQLIDARM 179 (628)
Q Consensus 158 ~vr~~L-kWAd~~~vK~~vd~~~ 179 (628)
+|-+.. -=|||+.|.+.|.+.+
T Consensus 453 qVMK~tkGkAdp~~VnelL~e~L 475 (478)
T 3h0l_B 453 QVMRETRGKANPQVVNKVIRELV 475 (478)
T ss_dssp -----------------------
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH
Confidence 763332 2489988888776554
No 75
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=94.87 E-value=0.017 Score=65.29 Aligned_cols=162 Identities=18% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHHHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCC------CCCCchhHHHHHHh
Q 006869 11 EILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT------NALVHRPTLLLYIV 83 (628)
Q Consensus 11 ~~~~~f~-~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~------~~~~~r~~l~~~I~ 83 (628)
+..+.|. ..|||+.-|.-++.++.+ .-+.+++.. +. -++...+.|...-..++. -...+...|++.|.
T Consensus 461 ~k~~r~~~~ygls~~~A~~l~~~~~~-d~FE~~v~~-~~---~pK~aanWL~~el~~L~~~i~~~~lt~e~la~LI~li~ 535 (633)
T 1zq1_C 461 AKVERYVKEYKLDRSLAQTLVDDERD-ELFEELVSM-GV---KPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLYL 535 (633)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHTSTH-HHHHHHHHT-TC---STTHHHHHHHHTTCC-----------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHhchHH-HHHHHHHHh-cC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 4455555 699999999999999874 555555543 21 255555555443222321 12346677888889
Q ss_pred hCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhC
Q 006869 84 SSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRL 163 (628)
Q Consensus 84 ~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~L 163 (628)
+|+|... ....-++.+... ...+.++.-++.|.. .+|.++|+++|.++|++|.+.+.+.. ...+|.+||+|.+..
T Consensus 536 ~gkIs~~-sAkevl~~~~~~--~~~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK~t 610 (633)
T 1zq1_C 536 EGKIAKE-AFEEIFKELARN--PSKSAREVAEEKGLT-LLSEEEVTRIIEEVIQQNIEVVKAKG-MGAMGLIMGRVMAKV 610 (633)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcccHH-HHHHHHHHHhcc--CCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHHHh
Confidence 8988763 333333322221 234556777777864 47899999999999999877555422 234788888887654
Q ss_pred C-CCChhhhHHHHHHHHHHh
Q 006869 164 P-WADPKIVKQLIDARMYEL 182 (628)
Q Consensus 164 k-WAd~~~vK~~vd~~~~~l 182 (628)
+ =|||+.|.+.|.+.+...
T Consensus 611 kGKADpk~VnelLke~L~~~ 630 (633)
T 1zq1_C 611 RGKADGKLVSQIVRRKLQEI 630 (633)
T ss_dssp --------------------
T ss_pred CCCCCHHHHHHHHHHHHhhh
Confidence 3 589998888887766443
No 76
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=94.05 E-value=0.065 Score=63.91 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=45.0
Q ss_pred Cce-eeeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 495 PYV-WEYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 495 P~~-~~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
|.. .++|++..+|.|||||+|+. .+...+.++ |.++++|.||+..+-...+..++...++.+
T Consensus 635 pk~v~~~G~v~~~G~KMSKS~GNv---------------v~p~d~i~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (967)
T 1wz2_A 635 PKGIAVNGFGTLEGQKMSKSKGNV---------------LNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (967)
T ss_dssp CCCEEEECCEEESSSCCCTTTCCC---------------CBHHHHHHT-TCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred cceEEEeeEEeeCCEEccccccCC---------------CCHHHHHHH-hChHHHHHHHHhCCCCCCCcccCHHHHHHH
Confidence 444 45688777999999999983 577788887 999999999986554444445555555544
No 77
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=93.65 E-value=0.066 Score=56.54 Aligned_cols=92 Identities=20% Similarity=0.164 Sum_probs=57.4
Q ss_pred eeEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-------CcccccHHHHHHHHHHHHHcCCCCCC--cc
Q 006869 274 NVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--IT 344 (628)
Q Consensus 274 ~v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-------D~~r~~~~~~~~I~~~L~wLGl~pd~--~~ 344 (628)
.|.+=| .|||.|||||...++-+|..-.. +..+++=|-|. |+ ....+....+..++-.+|++|++ +.
T Consensus 8 ~v~sG~--~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~~~~~-~~~~~~~~~~~~~~lA~GlDp~k~~i~ 83 (341)
T 3sz3_A 8 IVLSGV--QPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITVRQDP-QALHEATLDALAICLAVGVDPKKSTLF 83 (341)
T ss_dssp EEEEEE--CSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSCCCH-HHHHHHHHHHHHHHHHTTCCTTTSEEE
T ss_pred EEEeCc--CCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcCCCCH-HHHHHHHHHHHHHHHHcCCChhhcEEE
Confidence 345445 46799999999988777743332 34555555553 33 23445566677777889999986 77
Q ss_pred CCcccHHHHHHHHHHHHHcCCccccCCCHHHHH
Q 006869 345 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (628)
Q Consensus 345 ~qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~ 377 (628)
+||+..+ +.+..-. +.|.++.-++.
T Consensus 84 ~qS~v~~-~~el~~~-------l~~~~~~~~l~ 108 (341)
T 3sz3_A 84 VQSHVPE-HAQLGWV-------LNCYTQMGELS 108 (341)
T ss_dssp EGGGCTH-HHHHHHH-------HHTTSCHHHHH
T ss_pred eccchhh-hHHHHHH-------HHhhccHHHHH
Confidence 8999753 2332222 25666666654
No 78
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=93.47 E-value=0.078 Score=61.93 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=44.8
Q ss_pred CCcee-eeeeecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 494 QPYVW-EYSRLNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 494 ~P~~~-~~~~Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
.|..| +++++..+|.|||||+|+. .++..+.++ |.++++|.|++..+-...+..++...++.+
T Consensus 634 ~pk~v~~~G~v~~~G~KMSKS~GNv---------------v~p~dli~~-yGaDalR~~ll~~~~~~~d~~fs~~~~~~~ 697 (810)
T 1wkb_A 634 WPKGIAVNGFGTLEGQKMSKSKGNV---------------LNFIDAIEE-NGADVVRLYIMSLAEHDSDFDWRRKEVGKL 697 (810)
T ss_dssp SCCEEEEECCEEETTBCCCTTTTCC---------------CBHHHHHHH-HCHHHHHHHHHHHCCTTCCEEECHHHHHHH
T ss_pred cccEEEEEeEEEeCCeehhhcCCCc---------------CCHHHHHHH-cChHHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 35544 4688878999999999983 577777776 999999999985444344444555555443
No 79
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=93.24 E-value=0.092 Score=61.88 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=46.0
Q ss_pred ceeeeee-ecCCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 496 YVWEYSR-LNVSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 496 ~~~~~~~-Ln~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
.+|-|++ ++.+|.|||||+|+. .+...+.++ |.++++|.|++..+-...+..++...++..
T Consensus 514 ~v~~hG~vld~~G~KMSKSlGNv---------------IdP~dli~~-yGaDalR~~ll~~~~~~~D~~fs~~~l~~~ 575 (862)
T 1gax_A 514 TVLLHGLVLDEKGQKMSKSKGNV---------------IDPLEMVER-YGADALRFALIYLATGGQDIRLDLRWLEMA 575 (862)
T ss_dssp EEEEECCEECTTSCBCCTTTTCC---------------CCHHHHHHH-HCHHHHHHHHHHHCCTTCCEECCHHHHHHH
T ss_pred EEEEeeeEEcCCCCCccccCCCC---------------CCHHHHHHH-cChHHHHHHHHhcCCCCCCCccCHHHHHHH
Confidence 4666776 568999999999983 566777776 899999999998755555556666666654
No 80
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=93.23 E-value=0.018 Score=65.01 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=27.7
Q ss_pred hHHHHHHH-hcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCC-------CCCCchhHHHHH
Q 006869 10 SEILELFL-KIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLLYTVATKYPT-------NALVHRPTLLLY 81 (628)
Q Consensus 10 ~~~~~~f~-~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~-------~~~~~r~~l~~~ 81 (628)
++..+.|. ..|||+.-|.-++.++.+ .-+.+++.. +. -++...+.|......++. -...+...|++.
T Consensus 448 ~~k~~r~~~~ygls~~~A~~l~~~~~~-~~fe~~~~~-~~---~~K~aaNWL~~el~~Ln~~~i~i~~lt~e~la~LI~l 522 (619)
T 2d6f_C 448 SEKKERIMRDYGLSEDLASQLVKRNLV-DEFEALTEF-RV---DTTVIASLLAYTLRELRREGHDVDGLGLDELRDAIKL 522 (619)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHTTCT-TTC------------CCHHHHHTTTTHHHHHTC-------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcCcHH-HHHHHHHHh-cC---CHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHH
Confidence 34455565 689999999999888764 555555433 11 244444443333222321 223567778899
Q ss_pred HhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHh
Q 006869 82 IVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRK 161 (628)
Q Consensus 82 I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~ 161 (628)
|.+|+|... . |=+|+.......-+..+.-++.|.. .+|.++|+++|.++|++|.+.+.+.+ ...+|.+||+|.+
T Consensus 523 i~~gkIs~e-s---Akevl~~L~e~e~~~~eIIee~gl~-QlSDeELe~iV~eVIaeNp~~V~~gk-~K~mG~lmGqVMK 596 (619)
T 2d6f_C 523 LEVGKISKD-A---LRDIVACMADEGLAAEDAARKLNLL-LLAEDEIESIIQEIVEGNLDMISERG-MGAMGPLMGQAMG 596 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCchhHH-H---HHHHHHHHHhcCCCHHHHHHHhCcc-cCCHHHHHHHHHHHHHhChHHHhhcC-HhHHHHHHHHHHH
Confidence 999988762 2 3333332211235667777788864 47899999999999999877555522 2348888888866
Q ss_pred hCC-CCChhhhHHHHHHHH
Q 006869 162 RLP-WADPKIVKQLIDARM 179 (628)
Q Consensus 162 ~Lk-WAd~~~vK~~vd~~~ 179 (628)
..+ =|||+.|.+.|.+.+
T Consensus 597 ~tkGKADpk~VnelLke~L 615 (619)
T 2d6f_C 597 RLRGRADGKVVNRILREKI 615 (619)
T ss_dssp -------------------
T ss_pred HhcCCCCHHHHHHHHHHHH
Confidence 543 589988888776654
No 81
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=93.15 E-value=0.07 Score=56.42 Aligned_cols=91 Identities=18% Similarity=0.128 Sum_probs=56.4
Q ss_pred eEEEeCCCCCCcCchhHHHHHHHHHHHHHHcCCEEEEeeecC-------CcccccHHHHHHHHHHHHHcCCCCCC--ccC
Q 006869 275 VLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGYCYLRYDDT-------NPEAEKKEYIDHIEEIVQWMGWEPFK--ITY 345 (628)
Q Consensus 275 v~tRFaPsPtG~LHIGharaal~n~l~Ar~~~G~~iLRidDt-------D~~r~~~~~~~~I~~~L~wLGl~pd~--~~~ 345 (628)
+.+=| .|||.|||||...++-+|..- +.+..+++=|-|. |++ ...+....+..++-.+|++|++ +.+
T Consensus 18 i~sG~--~PTG~lHLGh~vg~l~~~~~l-Q~~~~~~~~iaD~hA~t~~~~~~-~~~~~~~~~~~~~lA~GlDp~k~~if~ 93 (346)
T 3n9i_A 18 VFSGA--QPSGELTIGNYMGALRQWVQM-QDDYDCIYCIVDLHAITARQDPA-LLRKRTLDTLALYLACGIDPKKSTIFV 93 (346)
T ss_dssp EEEEE--CSCSCCBHHHHHHTHHHHHTT-TTTSEEEEEECHHHHTTSCCCHH-HHHHHHHHHHHHHHHHTCCTTTSEEEE
T ss_pred EEECc--CCCCcccHHHHHHHHHHHHHH-HhhCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCccceEEEe
Confidence 44444 567999999999877787432 2245555555553 332 3345556667777789999986 778
Q ss_pred CcccHHHHHHHHHHHHHcCCccccCCCHHHHH
Q 006869 346 TSDYFQELYELAVELIRRGHAYVDHQTPEEIK 377 (628)
Q Consensus 346 qSd~~~~~~e~a~~Li~~G~AY~C~cs~eei~ 377 (628)
||+..+ ..+..-. +.|.++.-++.
T Consensus 94 qS~v~~-~~el~~~-------l~~~~~~~~l~ 117 (346)
T 3n9i_A 94 QSHVPE-HSQLSWA-------LNCYTYFGELS 117 (346)
T ss_dssp GGGCTH-HHHHHHH-------HHTTSBHHHHH
T ss_pred cccccc-chHHHHH-------HHHHhhHHHHH
Confidence 998753 2332211 35666655554
No 82
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=92.25 E-value=0.16 Score=60.25 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=42.3
Q ss_pred ceeeeeeec-CCCcccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHH
Q 006869 496 YVWEYSRLN-VSNTVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (628)
Q Consensus 496 ~~~~~~~Ln-~~g~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~ 571 (628)
.+|.||++. .+|.|||||+|+. .+...+.+. |.++++|.|+++ +-...+..++...+++
T Consensus 581 ~v~~hG~V~d~~G~KMSKSlGNv---------------V~P~dvi~~-yGaDalR~~lls-~~~~~D~~fs~~~l~~ 640 (917)
T 1ffy_A 581 FLLSHGFVMDGEGKKMSKSLGNV---------------IVPDQVVKQ-KGADIARLWVSS-TDYLADVRISDEILKQ 640 (917)
T ss_dssp EEEEECCEECTTSCCCCSSSSCC---------------CCHHHHHHH-TCHHHHHHHHHT-SCTTSCEECCHHHHHH
T ss_pred ceeEeeeEEcCCCcCcccccCCc---------------CChHHHHHh-CCHHHHHHHHhc-cCCCCCcccCHHHHHH
Confidence 357778865 5999999999984 567777776 999999999998 3222333455555544
No 83
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=91.87 E-value=0.61 Score=43.30 Aligned_cols=61 Identities=18% Similarity=0.338 Sum_probs=44.6
Q ss_pred HHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCC-CCChhhhHHHHHHH
Q 006869 112 EFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLP-WADPKIVKQLIDAR 178 (628)
Q Consensus 112 ~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~Lk-WAd~~~vK~~vd~~ 178 (628)
+.-+..|- ..+|.++|++.|.++|+++.+ .+ ...+|.+||.|.+.++ =|||+.|...|.+.
T Consensus 85 ~iie~~~~-~qlsd~el~~iV~evi~~~~~----~g-~k~~G~vmG~vmk~~~GkAD~~~v~~lvk~~ 146 (148)
T 1ng6_A 85 DILEVYLP-EQLSEEELRTIVNETIAEVGA----SS-KADMGKVMGAIMPKVKGKADGSLINKLVSSQ 146 (148)
T ss_dssp HHHGGGSC-CCCCHHHHHHHHHHHHHHTTC----CS-GGGHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhCc-ccCCHHHHHHHHHHHHHHCcc----cC-HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444453 458999999999999999865 33 3458999998876533 39999888877654
No 84
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=90.19 E-value=0.054 Score=63.28 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHhcCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCchhHHHHH-HHHHhhCCC----CCCCchhHHHHHHhhCCCCCH
Q 006869 16 FLKIGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCERRIGNLL-YTVATKYPT----NALVHRPTLLLYIVSSKIKTP 90 (628)
Q Consensus 16 f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~dk~~g~LL-y~latk~~~----~~~~~r~~l~~~I~~gklks~ 90 (628)
|...|||+.-|.-++.++.++.-++++.. +. -++...+.| ..|...++. -...+...|+..|.+|+|.+.
T Consensus 688 ~~eyGLs~~dA~vL~~~~~ladyFE~v~~--~~---~pk~aANWl~~eL~~~Ln~~~~~itp~~LaeLi~LI~~g~IS~k 762 (851)
T 2hz7_A 688 LLGLGASEGDARTIARDPALLAFVGGAAP--GD---TFAQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSAR 762 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHcCCCHHHHHHHHCCHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCccHH
Confidence 57899999999999999888888877742 11 244444443 233433332 234678899999999999874
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhc--cccchhhhHHHHHhhC-CCCC
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELR--YRTNVGDLFAHVRKRL-PWAD 167 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~r--y~~n~g~ll~~vr~~L-kWAd 167 (628)
.....++-+-.. .-+.++.-++.|...+-..++|+++|.++|++|.+.+.+-| =..-+|-|+|+|=+.. ==||
T Consensus 763 -~AK~Vl~~m~~~---~~~p~eIVee~GL~qISD~~eLe~iV~eVIa~Np~~Ve~yr~GK~ka~gfLVGQVMK~tkGKAn 838 (851)
T 2hz7_A 763 -IAREALARAAAS---GDAPLTIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGKAD 838 (851)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHhc---CCCHHHHHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcccHhHHHHHHHHHHHHhCCCCC
Confidence 445556555432 35678888999987633344899999999999988765511 1122455555553221 2378
Q ss_pred hhhhHHHHHHH
Q 006869 168 PKIVKQLIDAR 178 (628)
Q Consensus 168 ~~~vK~~vd~~ 178 (628)
|+.|.+.+.+.
T Consensus 839 P~~VnelL~ek 849 (851)
T 2hz7_A 839 PQALAAALKDA 849 (851)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88777766543
No 85
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=88.87 E-value=0.42 Score=56.44 Aligned_cols=47 Identities=17% Similarity=0.027 Sum_probs=34.7
Q ss_pred ccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHH
Q 006869 509 VMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEY 571 (628)
Q Consensus 509 KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~ 571 (628)
|||||+||. .+...+.++ |.++++|.|++..+-...+...+...++.
T Consensus 639 KMSKSkGNv---------------VdP~diIek-YGADalRl~ll~~~~~~~dl~~s~~~ie~ 685 (880)
T 4arc_A 639 KMSKSKNNG---------------IDPQVMVER-YGADTVRLFMMFASPADMTLEWQESGVEG 685 (880)
T ss_dssp ECCTTTTCC---------------CCHHHHHHH-HCHHHHHHHHHHSSCTTSCEECCHHHHHH
T ss_pred cccCcCCCC---------------CCHHHHHHH-cCchHHHHHHHhcCCCCCCcccCHHHHHH
Confidence 999999984 677888887 99999999999885333343444444444
No 86
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=87.29 E-value=1.1 Score=51.38 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=50.6
Q ss_pred EeCCCCCCcCchhHHHHHHH--HHHHHHHcCCEEEEeeecC-----Cc----ccccHHHHHHHHHHHHHcCCCCC-CccC
Q 006869 278 RFPPEPNGYLHIGHAKAMFV--DFGLAKERGGYCYLRYDDT-----NP----EAEKKEYIDHIEEIVQWMGWEPF-KITY 345 (628)
Q Consensus 278 RFaPsPtG~LHIGharaal~--n~l~Ar~~~G~~iLRidDt-----D~----~r~~~~~~~~I~~~L~wLGl~pd-~~~~ 345 (628)
=|-| |||-||+||+..++. +-..--..|+..++=|-|- |+ .....++......++..+|+++. ++.+
T Consensus 386 ~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~k~~fv~ 464 (690)
T 3p0j_A 386 MWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVT 464 (690)
T ss_dssp EECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCTTSEEEE
T ss_pred EecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCeEEEE
Confidence 3788 999999999998765 3222223488888888876 33 12334555666778899999863 4778
Q ss_pred CcccHH
Q 006869 346 TSDYFQ 351 (628)
Q Consensus 346 qSd~~~ 351 (628)
+|+...
T Consensus 465 ~S~~~~ 470 (690)
T 3p0j_A 465 ENEVIL 470 (690)
T ss_dssp HHHHHH
T ss_pred CCchhc
Confidence 888543
No 87
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=82.34 E-value=1.3 Score=52.30 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=36.6
Q ss_pred cccccccccccccccccCCCCCcchhhHHHHHHcCCCHHHHHHHHHHcCCCCCCcccchhhHHHH
Q 006869 508 TVMSKRKLNFLVTNKYVDGWDDPCLMTLAGLRRRGVTSTSINAFVQGIGISRSDSLIRLDRLEYH 572 (628)
Q Consensus 508 ~KLSKR~~~~lv~~~~v~~wddPr~~tl~~lr~~G~~peaI~~fl~~lG~t~~~~~~~~~~le~~ 572 (628)
.|||||+|+. .+...+.++ |.++++|.|++..+-...+..++...++..
T Consensus 636 ~KMSKSkGNv---------------VdP~diI~~-yGADalRl~ll~~~~~~~D~~fs~~~v~~~ 684 (878)
T 2v0c_A 636 AVMSKSKGNG---------------VMVGPFVKE-QGADIARITILFAAPPENEMVWTEEGVQGA 684 (878)
T ss_dssp EECSGGGTCC---------------CBHHHHHHH-SCHHHHHHHHHHHSCTTSCEEECHHHHHHH
T ss_pred HHhhccCCCc---------------ccHHHHHHH-cCccHHHHHHhccCCCCCCceeCHHHHHHH
Confidence 8999999984 567777877 999999999998654444545555555443
No 88
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=61.46 E-value=29 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=39.4
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
+..++..|++.+-...++.|+.++|...+ -.|..+|+++|.+.++.+
T Consensus 82 ~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~ 129 (176)
T 2lhi_A 82 SEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREV 129 (176)
T ss_dssp HHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhh
Confidence 45679999999977777889999999876 468889999999988765
No 89
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=60.99 E-value=14 Score=29.95 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=36.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHH
Q 006869 86 KIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 86 klks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~ 135 (628)
...|..||..|++-+ +..++-|+.+++.. .+|+|||...|+.+
T Consensus 5 ~~~~~eel~eAFr~f-~dg~G~It~~eLr~------~lt~eevd~~i~~~ 47 (75)
T 1h8b_A 5 DTDTAEQVIASFRIL-ASDKPYILAEELRR------ELPPDQAQYCIKRM 47 (75)
T ss_dssp CCSTHHHHHHHHHHH-TTSCSSBCHHHHHH------HSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHH-hcCCCCcCHHHHHh------cCCHHHHHHHHHhc
Confidence 345889999999988 66667899999999 59999999988874
No 90
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=60.90 E-value=54 Score=30.00 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=39.7
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-----CCCceeCHHHHHHHHHHHHHh
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-----GVGVEVSSEDIELTVNEVFEE 138 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-----GVGv~vT~E~I~~~V~~~i~~ 138 (628)
+...+..+++.+-...++.|+.++|...+ ..|..+|++++++.+..++..
T Consensus 109 ~~~~l~~~F~~~D~d~~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~ 163 (207)
T 2ehb_A 109 VHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQ 163 (207)
T ss_dssp HHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHH
Confidence 45668889988876666789999999886 457889999999888876654
No 91
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=56.50 E-value=76 Score=26.80 Aligned_cols=46 Identities=30% Similarity=0.487 Sum_probs=36.9
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcC--CCceeCHHHHHHHHHHH
Q 006869 90 PAQLEAAFSFFASTGSENFEVDEFEEACG--VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 90 ~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG--VGv~vT~E~I~~~V~~~ 135 (628)
...+..+++.+-...++.|+.++|...+. .|..+|++++...+..+
T Consensus 87 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 87 VKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 46688888888666667899999998875 57889999998887765
No 92
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=51.84 E-value=1.1e+02 Score=28.71 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=40.5
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-----CCCceeCHHHHHHHHHHHHHh
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-----GVGVEVSSEDIELTVNEVFEE 138 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-----GVGv~vT~E~I~~~V~~~i~~ 138 (628)
+...+..+++.+-...++.|+.++|...+ ..|..+|++++++.+..++..
T Consensus 120 ~~~~l~~~F~~~D~d~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~ 174 (226)
T 2zfd_A 120 IDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEE 174 (226)
T ss_dssp HHHHHHHHHHHHCTTSSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45678889988876666789999999987 578889999999988866554
No 93
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=51.55 E-value=46 Score=29.00 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=39.2
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
..+...+..|++.+-...++.|+.++|...+. +|..+|.++|.+.+..+
T Consensus 79 ~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 128 (148)
T 2lmt_A 79 TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREA 128 (148)
T ss_dssp TTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHHh
Confidence 34567899999999777778899999988764 57788999998877654
No 94
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=51.10 E-value=82 Score=28.74 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=54.1
Q ss_pred CCChhHHHHHHHhcCCCchhHHHHhhCHH-------H-HHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchhH
Q 006869 6 KGDKSEILELFLKIGLDDRTAKNTIANNK-------V-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPT 77 (628)
Q Consensus 6 ~~~~~~~~~~f~~iGL~e~kaket~kN~k-------l-~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~~ 77 (628)
+-..+++-.++..+|+++...+++.+.=. + ...|..++...+.. ..+...-.-++...-.-.........+
T Consensus 15 ~l~~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~-~~~~~~~~~~f~~~D~d~~G~i~~~Ef 93 (207)
T 2d8n_A 15 ALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPD-TDPKAYAQHVFRSFDSNLDGTLDFKEY 93 (207)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTT-SCCHHHHHHHHHHHCTTCCSEEEHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccC-CCcHHHHHHHHHHhcCCCCCeEeHHHH
Confidence 34567888889999999888887654211 1 12334444433321 112222222333332211111222333
Q ss_pred HHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC
Q 006869 78 LLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACG 118 (628)
Q Consensus 78 l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG 118 (628)
+.-.-.-+.-.+...+..+++.+-...++.|+.++|...+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~l~ 134 (207)
T 2d8n_A 94 VIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVM 134 (207)
T ss_dssp HHHHHHHSCSSSSTTHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhcCCCCCeEcHHHHHHHHH
Confidence 32222223234456677777766544445677777766553
No 95
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=50.95 E-value=13 Score=34.58 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=44.4
Q ss_pred chhHHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC---CceeCHHHHHHHHHHH
Q 006869 74 HRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGV---GVEVSSEDIELTVNEV 135 (628)
Q Consensus 74 ~r~~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV---Gv~vT~E~I~~~V~~~ 135 (628)
...++.-........+...+..|++.+-...++.|+.++|.+.++- |..+|++++.+.+..+
T Consensus 112 ~~EF~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~~~~~~~~~l~~~~ 176 (197)
T 3pm8_A 112 YTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV 176 (197)
T ss_dssp HHHHHHTTCCHHHHCSHHHHHHHHHHHCTTCSSEECHHHHHHHHC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 3445444433344556778899999887666678999999998864 6678888888777765
No 96
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genom 2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1
Probab=48.78 E-value=24 Score=33.59 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=39.1
Q ss_pred CCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhh---CCCCC
Q 006869 108 FEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKR---LPWAD 167 (628)
Q Consensus 108 id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~---LkWAd 167 (628)
+|++||++++.-|+ ||+|+.+.+++..-.- .+.|.+.+|. ++.=|... |-|++
T Consensus 120 lDeDEL~~A~~~Gl-Is~e~ae~Alr~a~~~-v~~i~~~g~d-----l~~Wl~~~g~~l~w~~ 175 (176)
T 2p12_A 120 LDVDELMEAHTTGL-LDTATAEQAILTATTA-IDGIAAHGHD-----LGRWLASIGMPIDWRG 175 (176)
T ss_dssp ECHHHHHHHHHTTS-SCHHHHHHHHHHHHHH-HHHHHHTTTC-----HHHHHHHTTCCCCCCC
T ss_pred ecHHHHHHHHHcCC-CCHHHHHHHHHHHHHH-HHHHHHccCC-----HHHHHHhCCCcceeCC
Confidence 89999999999998 9999999998876554 3335444443 45555544 88885
No 97
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=48.54 E-value=30 Score=31.14 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcc
Q 006869 6 KGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAA 47 (628)
Q Consensus 6 ~~~~~~~~~~f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~ 47 (628)
..+.+.+.+.+..+||+..+....+.++.+...+..-...+.
T Consensus 103 ~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~ 144 (184)
T 4dvc_A 103 PKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQ 144 (184)
T ss_dssp CSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999998888876655543
No 98
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.09 E-value=9.3 Score=32.28 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
.++..|++.+-...++.|+.++|..++. .|+.+|.+||++.++.+
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~ 81 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRL 81 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4577888888776678899999988764 57889999998887754
No 99
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=47.85 E-value=25 Score=31.63 Aligned_cols=50 Identities=28% Similarity=0.347 Sum_probs=41.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHH
Q 006869 85 SKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 85 gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~ 135 (628)
....+...+..+++.+-...++.|+.++|...+. |..+|++++...+..+
T Consensus 117 ~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~-~~~~~~~~~~~~~~~~ 166 (191)
T 3khe_A 117 QLLLSRERLLAAFQQFDSDGSGKITNEELGRLFG-VTEVDDETWHQVLQEC 166 (191)
T ss_dssp HHHCCHHHHHHHHHHHCTTCSSEECHHHHHHHTT-SSCCCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCcCcCCHHHHHHHHc-cCCCCHHHHHHHHHHh
Confidence 3445677889999988666667899999999999 9999999998887765
No 100
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=47.28 E-value=1.5e+02 Score=26.26 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCCChhHHHHHHHhcCCCchhHHHHhhCH-------HH-HHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchh
Q 006869 5 SKGDKSEILELFLKIGLDDRTAKNTIANN-------KV-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRP 76 (628)
Q Consensus 5 ~~~~~~~~~~~f~~iGL~e~kaket~kN~-------kl-~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~ 76 (628)
++-..+++-.+....|++++..+++.+.- .+ ...|..++...+.. ..+...-.-++...-+-.........
T Consensus 6 ~~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~f~~~D~d~~G~i~~~e 84 (190)
T 2l2e_A 6 SKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPF-GDPSAFAEYVFNVFDADKNGYIDFKE 84 (190)
T ss_dssp CCSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHHCCC-SCHHHHHHHHHHHHCSSSTTCEEHHH
T ss_pred ccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCC-CCccHHHHHHHHHhcCCCCCeEeHHH
Confidence 34466777777888899888777665421 11 12233333333221 11111111222222221111122333
Q ss_pred HHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC
Q 006869 77 TLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACG 118 (628)
Q Consensus 77 ~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG 118 (628)
++.-.-.-+.-.+...+..+++.+-...++.|+.++|...+.
T Consensus 85 f~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~ 126 (190)
T 2l2e_A 85 FICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126 (190)
T ss_dssp HHHHHTTSSCSCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhHccCCCCCcCcHHHHHHHHH
Confidence 333332334445667788888877655556788888887653
No 101
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=46.88 E-value=69 Score=30.28 Aligned_cols=108 Identities=8% Similarity=0.086 Sum_probs=47.9
Q ss_pred hhHHHHHHHhcCCCchhHHHHhhCHHH--------HHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchhHHHH
Q 006869 9 KSEILELFLKIGLDDRTAKNTIANNKV--------TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLL 80 (628)
Q Consensus 9 ~~~~~~~f~~iGL~e~kaket~kN~kl--------~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~~l~~ 80 (628)
.+++-++....|++++..+++.+-=.. ...|..++...+. .......-.-++...-+-.........++.-
T Consensus 36 ~~~l~~l~~~~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~-~~~~~~~~~~~f~~~D~d~~G~I~~~Ef~~~ 114 (224)
T 1s1e_A 36 PEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFP-HGDASTYAHYLFNAFDTTQTGSVKFEDFVTA 114 (224)
T ss_dssp --CHHHHHHHSSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCT-TSCCHHHHHHHHHHHCTTCSSCBCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcC-CCCcHHHHHHHHHHhcCCCCCcEeHHHHHHH
Confidence 344566777788888777765432111 0223333332221 1112222222333332222222223333322
Q ss_pred HHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 006869 81 YIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (628)
Q Consensus 81 ~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c 117 (628)
.-.-+.-.+...+..+++.+-...++.|+.++|...+
T Consensus 115 l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l 151 (224)
T 1s1e_A 115 LSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIV 151 (224)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCTTCCSEECHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCeECHHHHHHHH
Confidence 2211222345667777776655555667777777665
No 102
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=45.61 E-value=24 Score=31.81 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=39.5
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHHH
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
..+..+|..|++.+-...++.|+.++|.+.+ -+|..+|++||.+.++.+
T Consensus 81 ~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~ 130 (159)
T 3i5g_C 81 GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFC 130 (159)
T ss_dssp TCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4466789999999977667789999998875 367889999998877654
No 103
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=45.18 E-value=42 Score=27.29 Aligned_cols=61 Identities=11% Similarity=0.239 Sum_probs=43.9
Q ss_pred CchhHHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHHH
Q 006869 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 73 ~~r~~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
.+...+...+.. -.+..++..+++.+-...++.|+.++|...+ .+|..+|.+++.+.++.+
T Consensus 13 ~~~~~~~~~~~~--~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 13 GENLYFQSLMKD--TDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp CCTHHHHHHHCC--CSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHhcC--CCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344555554433 3467889999998876666789999998775 356778999988877654
No 104
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=44.60 E-value=95 Score=26.07 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=37.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
.....+..+++.+-...++.|+.++|...+. +|..+|++++...+..+
T Consensus 76 ~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (142)
T 2bl0_C 76 TSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGIT 124 (142)
T ss_dssp CCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3667888999887666667899999988763 56778999998887765
No 105
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=43.37 E-value=91 Score=27.76 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=53.7
Q ss_pred CCCCChhHHHHHHHhcCCCchhHHHHhhCH-------HH-HHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCC---CC
Q 006869 4 VSKGDKSEILELFLKIGLDDRTAKNTIANN-------KV-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTN---AL 72 (628)
Q Consensus 4 ~~~~~~~~~~~~f~~iGL~e~kaket~kN~-------kl-~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~---~~ 72 (628)
.|+-..+++-.+....++++...+++.+-= .+ ...|..++...+.. +.+... +..+-..+-.+ ..
T Consensus 5 ~~~l~~~~l~~l~~~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~-~~~~~~---~~~~f~~~D~d~~G~i 80 (190)
T 1fpw_A 5 TSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPF-GSPEDF---ANHLFTVFDKDNNGFI 80 (190)
T ss_dssp SCCSTTHHHHHHTTTCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTT-SCCSHH---HHHHHHTCCSSCSSEE
T ss_pred cCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCC-CCcHHH---HHHHHHHHCCCCCCcE
Confidence 455567777777777888888776654311 11 01222333222110 011111 12222222211 12
Q ss_pred CchhHHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC
Q 006869 73 VHRPTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACG 118 (628)
Q Consensus 73 ~~r~~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG 118 (628)
....++.-.-.-+.-.+...+..+++.+-...++.|+.++|...+.
T Consensus 81 ~~~ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~ef~~~~~ 126 (190)
T 1fpw_A 81 HFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVA 126 (190)
T ss_dssp CHHHHHHHHHHHSCCCSTHHHHHHHHHHCSSCSSEEEHHHHHHHHH
T ss_pred eHHHHHHHHHHHccCCcHHHHHHHHHHhcCCCCCcCcHHHHHHHHH
Confidence 2233332222223334567788888877655556788888887653
No 106
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=42.79 E-value=1.6e+02 Score=26.04 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=22.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c 117 (628)
.+...+..+++.+-...++.|+.++|...+
T Consensus 89 ~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~ 118 (183)
T 1s6c_A 89 TVHEKLRWTFNLYDINKDGYINKEEMMDIV 118 (183)
T ss_dssp CHHHHHHHHHHHHCTTCSSCEEHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 355678888887765556778888888776
No 107
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=42.59 E-value=1.1e+02 Score=27.35 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=38.6
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHH
Q 006869 90 PAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVF 136 (628)
Q Consensus 90 ~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i 136 (628)
...+..|++.+-...++.|+.++|...+. |..+|++++.+.+..+=
T Consensus 107 ~~~~~~~F~~~D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~d 152 (180)
T 3mse_B 107 STFLKAAFNKIDKDEDGYISKSDIVSLVH-DKVLDNNDIDNFFLSVH 152 (180)
T ss_dssp -CHHHHHHHHHCTTCSSCBCHHHHHHHTT-TSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHc-CCCCCHHHHHHHHHHhh
Confidence 36788999988766667899999999999 99999999998887654
No 108
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=41.74 E-value=1.1e+02 Score=27.14 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCCCChhHHHHHHHhcCCCchhHHHHhhCH-------HH-HHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCch
Q 006869 4 VSKGDKSEILELFLKIGLDDRTAKNTIANN-------KV-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHR 75 (628)
Q Consensus 4 ~~~~~~~~~~~~f~~iGL~e~kaket~kN~-------kl-~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r 75 (628)
.|+-..+++-.+....+++.+..+++.+-= .+ ...|..++..... .+.+...-.-++...-.-........
T Consensus 5 ~~~l~~~~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~f~~~D~d~~g~i~~~ 83 (190)
T 1g8i_A 5 NSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFP-FGDPTKFATFVFNVFDENKDGRIEFS 83 (190)
T ss_dssp CCSCCHHHHHHHHHTSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCT-TSCTHHHHHHHHHHHCTTCSSEEEHH
T ss_pred cccCCHHHHHHHHHccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCC-CCChHHHHHHHHHHHhcCCCCeEeHH
Confidence 456667777777777888887766644321 01 1122233322211 01122222222222222111112223
Q ss_pred hHHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 006869 76 PTLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (628)
Q Consensus 76 ~~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c 117 (628)
.++.-.-.-+.-.+...+..+++.+-...++.|+.++|...+
T Consensus 84 ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~l 125 (190)
T 1g8i_A 84 EFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIV 125 (190)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSEEEHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhcCCCCCeECHHHHHHHH
Confidence 333222112222345667777776655545567777777664
No 109
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=40.10 E-value=94 Score=26.73 Aligned_cols=49 Identities=12% Similarity=0.399 Sum_probs=37.2
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
..+...+..|++.+-...++.|+.++|...+. +|..+|++++...+..+
T Consensus 83 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 132 (156)
T 1wdc_B 83 TDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEA 132 (156)
T ss_dssp CCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 34667899999877666667899999988753 56778999988776653
No 110
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=39.50 E-value=85 Score=26.87 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=36.7
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
+..++..|++.+-...++.|+.++|...+ .+|..+|++++.+.+..+
T Consensus 81 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 128 (148)
T 1exr_A 81 SEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREA 128 (148)
T ss_dssp HHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34677888888866666789999998765 367789999998887765
No 111
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=38.10 E-value=43 Score=27.33 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV----Gv~vT~E~I~~~V~~~ 135 (628)
.+..++..|++.+-...++.|+.++|...+.. |..+|++++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 2pvb_A 38 KSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADG 89 (108)
T ss_dssp SCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHh
Confidence 35678899999887666678999999988753 7789999998877755
No 112
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=37.11 E-value=70 Score=27.34 Aligned_cols=61 Identities=15% Similarity=-0.026 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCCCHHhHHHHHHHHHhcC-CCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhh
Q 006869 77 TLLLYIVSSKIKTPAQLEAAFSFFASTG-SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (628)
Q Consensus 77 ~l~~~I~~gklks~~Ql~aA~~yl~~~~-~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~ 139 (628)
-+++-|.+..-.|...++.+|..+..+. ...-..==|-- --|...|||.|.+.|.++-.+|
T Consensus 17 ~lv~~I~~~~~~~E~e~d~ll~~fe~iteHP~gSDLIfyP--~~~~e~SPEgIv~~IKeWRa~n 78 (94)
T 3u43_A 17 EFVKKICRAEGATEEDDNKLVREFERLTEHPDGSDLIYYP--RDDREDSPEGIVKEIKEWRAAN 78 (94)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHHHHCCTTTTHHHHSC--CTTSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCccCeeeeC--CCCCCCCHHHHHHHHHHHHHHc
Confidence 3478888888789999999999876542 11112222222 2278999999999999998764
No 113
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=36.82 E-value=1.4e+02 Score=24.14 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=38.9
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV----Gv~vT~E~I~~~V~~~ 135 (628)
.+..++..+++.+-...++.|+.++|...+.. |..+|++++...+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 39 KTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp CCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 46788999999887766788999999987643 7889999998877654
No 114
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=36.30 E-value=90 Score=26.17 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 90 PAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 90 ~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
...+..+++.+-...++.|+.++|.+.+. +|..+|++++...+..+
T Consensus 83 ~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 83 EQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 45678888877655567899999998874 67789999999888766
No 115
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=35.66 E-value=49 Score=27.00 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=38.7
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV----Gv~vT~E~I~~~V~~~ 135 (628)
....++..+++.+-...++.|+.++|...+.- |..+|++++...+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 39 MSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp SCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 35678899999887666678999999988753 7889999988877755
No 116
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=35.31 E-value=1e+02 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.392 Sum_probs=35.9
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
+...+..+++.+-...++.|+.++|...+. .|..+|++++...+..+
T Consensus 94 ~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 141 (161)
T 3fwb_A 94 PLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEF 141 (161)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 456788888888666567799999998763 56788999988776644
No 117
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=35.20 E-value=1.9e+02 Score=27.70 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=20.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c 117 (628)
.+..++..+++.+-...++.|+.++|...+
T Consensus 162 ~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l 191 (256)
T 2jul_A 162 TVHEKLKWAFNLYDINKDGCITKEEMLAIM 191 (256)
T ss_dssp CHHHHHHHHHHHTCCSSSSCBCHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 356677777776655555678888887766
No 118
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=33.63 E-value=37 Score=31.42 Aligned_cols=50 Identities=22% Similarity=0.396 Sum_probs=40.8
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC--CCceeCHHHHHHHHHHHHHh
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG--VGVEVSSEDIELTVNEVFEE 138 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG--VGv~vT~E~I~~~V~~~i~~ 138 (628)
....+..|++.+-...++.|+.++|...+. +|..+|++++.+.|..++..
T Consensus 111 ~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~ 162 (208)
T 2ct9_A 111 RSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQE 162 (208)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCEEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 456788888888766667899999999986 48889999999997777654
No 119
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=33.60 E-value=72 Score=32.07 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=54.1
Q ss_pred CCCchhHHHHHHHHHhhCCCCCCCchhHHHHHHhhCCCC-CHH-----hHHHHHHHHHhcCCC--CCCHHHHHHHcCCCc
Q 006869 50 DGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIK-TPA-----QLEAAFSFFASTGSE--NFEVDEFEEACGVGV 121 (628)
Q Consensus 50 ~~~dk~~g~LLy~latk~~~~~~~~r~~l~~~I~~gklk-s~~-----Ql~aA~~yl~~~~~~--~id~~~Fe~~cGVGv 121 (628)
.+.|.=.-.|+|-+...-+++...+..||-.++..+++. .+. ++.||+.|+++.... .++.++|++... |-
T Consensus 187 ~~ADd~LP~Liyvvika~~~~l~s~l~yI~~F~~~~~l~~GE~gY~lttl~aAv~fI~~l~~~~L~i~~~ef~~~~~-~~ 265 (274)
T 2ot3_A 187 ASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMS-GQ 265 (274)
T ss_dssp BCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTTTSSHHHHHHHHHHHHHHHHHHCCTGGGTCCHHHHHHHHT-TS
T ss_pred CCHHHHHHHHHHHHHHcCcchHHHHHHHHHHHcCcccccCCHHHHHHHHHHHHHHHHHhCCHHhcCCCHHHHHHHHh-hc
Confidence 446777788899888776666566778888888777764 333 589999999976432 488999998887 44
Q ss_pred eeC
Q 006869 122 EVS 124 (628)
Q Consensus 122 ~vT 124 (628)
+..
T Consensus 266 ~~~ 268 (274)
T 2ot3_A 266 TSP 268 (274)
T ss_dssp CCC
T ss_pred cCC
Confidence 333
No 120
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=33.39 E-value=64 Score=27.22 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=37.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
.+...+..|++.+-...++.|+.++|...+ .+|..+|++++...+..+
T Consensus 73 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~~ 121 (143)
T 3j04_B 73 DPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREA 121 (143)
T ss_dssp CCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 345778888887765566789999999877 467889999998777655
No 121
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=33.12 E-value=40 Score=26.73 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=34.8
Q ss_pred HhHHHHHHHHH-hcCCC-CCCHHHHHHHcC------CCceeCHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFA-STGSE-NFEVDEFEEACG------VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 91 ~Ql~aA~~yl~-~~~~~-~id~~~Fe~~cG------VGv~vT~E~I~~~V~~~ 135 (628)
.++..+++.+- ...++ .|+.++|...+. +|..+|++++.+.+..+
T Consensus 9 ~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g~~~~~~~~~~~~~~~ 61 (93)
T 1k2h_A 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKEL 61 (93)
T ss_dssp HHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 45777888776 46667 899999988765 67888999988877655
No 122
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=32.74 E-value=28 Score=31.13 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=38.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNE 134 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~ 134 (628)
.+...|..|++.+-...++.|+.++|...+ .+|..+|+++|.+.++.
T Consensus 82 ~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~~ 129 (153)
T 3i5g_B 82 DPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKD 129 (153)
T ss_dssp CCHHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHTT
T ss_pred ccHHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 456789999998877667889999998876 47889999999877654
No 123
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=32.65 E-value=1.6e+02 Score=29.11 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=42.0
Q ss_pred hhHHHHHHHh--cCCCchhHHHHhhCHHHHHHHHHHHHHcccCCCCc--h-------hHHHHHHHHHhhCC
Q 006869 9 KSEILELFLK--IGLDDRTAKNTIANNKVTANLTAVIHEAAVTDGCE--R-------RIGNLLYTVATKYP 68 (628)
Q Consensus 9 ~~~~~~~f~~--iGL~e~kaket~kN~kl~~~L~~ii~~a~~~~~~d--k-------~~g~LLy~latk~~ 68 (628)
|...++.|++ .-+..+...|+-+||.+...|.+.....|++ ++. | ..|..-|.||.++-
T Consensus 12 ~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVD-Plas~kg~ws~~lG~gdfy~eLavqIv 81 (234)
T 3cuq_A 12 MSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVD-PLASGKGFWSEMLGVGDFYYELGVQII 81 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCC-TTSCTTSHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCC-cccCCcchhhhhcCcchHHHHHHHHHH
Confidence 3444444443 2334567789999999999999999999996 333 2 25788899997753
No 124
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=31.44 E-value=2.3e+02 Score=23.60 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=36.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNE 134 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~ 134 (628)
.+...+..+++.+-...++.|+.++|...+. +|..+|.+++...+..
T Consensus 82 ~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 129 (149)
T 2mys_C 82 GTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKG 129 (149)
T ss_pred chHHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 3457788888877666667899999988763 5777899998887765
No 125
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=30.25 E-value=1.4e+02 Score=25.55 Aligned_cols=47 Identities=23% Similarity=0.457 Sum_probs=34.7
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
....+..+++.+-...++.|+.++|...+. .|..+|++++...+..+
T Consensus 89 ~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 136 (158)
T 2jnf_A 89 MQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEI 136 (158)
T ss_dssp TSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCcCCHHHHHHHHHHh
Confidence 446788888888666667799999887753 35668888888776654
No 126
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=30.18 E-value=1.1e+02 Score=25.92 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=38.0
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
+...+..|++.+-...++.|+.++|...+ ..|..+|++++...+..+
T Consensus 82 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 129 (146)
T 2qac_A 82 NVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF 129 (146)
T ss_dssp CHHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 56788889887766556779999998876 357789999999998887
No 127
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=29.86 E-value=1.1e+02 Score=25.40 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHhcCC-CCCCHHHHHHHcCCCceeCHHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFASTGS-ENFEVDEFEEACGVGVEVSSEDIELTVNEVF 136 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~-~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i 136 (628)
..|..+++|+..+.. .+++.+++-+.+| +|+..+....++..
T Consensus 3 ~~i~~~~~~i~~~~~~~~~~~~~lA~~~~----~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVC----LSPSRLSHLFRQQL 45 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 568899999999986 7899999999999 67777777776664
No 128
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=29.85 E-value=40 Score=24.61 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 92 QLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 92 Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
++..+++.+-...++.++.++|...+. +|..+|++++...+..+
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 355566655555556677777776652 45667777777666544
No 129
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=29.84 E-value=52 Score=26.86 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=38.1
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC----CCceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG----VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG----VGv~vT~E~I~~~V~~~ 135 (628)
.+..++..+++.+-...++.|+.++|...+. .|..+|++++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 38 KTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp CCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 4678899999988766667899999987753 27889999998877654
No 130
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=29.79 E-value=51 Score=26.86 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC----CceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV----GVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV----Gv~vT~E~I~~~V~~~ 135 (628)
....++..+++.+-...++.|+.++|...+.. |..+|.+++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (108)
T 1rro_A 38 MSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAA 89 (108)
T ss_dssp SCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHh
Confidence 35678889999887666678999999988743 7889999988877754
No 131
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=29.67 E-value=2e+02 Score=24.47 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=35.8
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
.+..++..+++.+-...++.|+.++|...+. .|..+|++++...+..+
T Consensus 92 ~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~~~ 140 (161)
T 1dtl_A 92 KSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDG 140 (161)
T ss_dssp CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC--CCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3456788899888666667899999988763 57778999988877755
No 132
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=29.39 E-value=1.5e+02 Score=25.57 Aligned_cols=46 Identities=15% Similarity=0.403 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 90 PAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 90 ~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
...+..+++.+-...++.|+.++|...+. .|..+|++++...+..+
T Consensus 100 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 146 (169)
T 3qrx_A 100 REEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEA 146 (169)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 45677788877666667899999988763 56789999988877655
No 133
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A
Probab=28.86 E-value=1.7e+02 Score=27.43 Aligned_cols=55 Identities=4% Similarity=0.131 Sum_probs=40.6
Q ss_pred hCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC-----CceeCHHHHHHHHHHHHHh
Q 006869 84 SSKIKTPAQLEAAFSFFASTGSENFEVDEFEEACGV-----GVEVSSEDIELTVNEVFEE 138 (628)
Q Consensus 84 ~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV-----Gv~vT~E~I~~~V~~~i~~ 138 (628)
.+.-.+..++..+++.+-...++.|+.++|...+.- |..+|++++...+..++..
T Consensus 97 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 156 (272)
T 2be4_A 97 EAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKI 156 (272)
T ss_dssp HSCCCCHHHHHHHHHHHCTTCCSEEEGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 344567788999998887666677999998887642 6778888888776666654
No 134
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=28.15 E-value=3.1e+02 Score=24.15 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=54.3
Q ss_pred CCCChhHHHHHHHhcCCCchhHHHHhhCHH-------H-HHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchh
Q 006869 5 SKGDKSEILELFLKIGLDDRTAKNTIANNK-------V-TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRP 76 (628)
Q Consensus 5 ~~~~~~~~~~~f~~iGL~e~kaket~kN~k-------l-~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~ 76 (628)
|+...+++-.+-...++++...+++.+.=. + ...|..++...+.. ..+...-.-++...-.-.........
T Consensus 6 s~l~~~~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~f~~~D~d~~g~i~~~E 84 (193)
T 1bjf_A 6 SKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPY-GDASKFAEHVFRTFDANGDGTIDFRE 84 (193)
T ss_dssp CCCCHHHHHHHHHHSSCCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTTSSS-SCCHHHHHHHHHHHCSSCSSEEEHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHhcCc-CChHHHHHHHHHHhCCCCCCcCcHHH
Confidence 455666666677777888887766543211 1 11222222222211 11111122233333222222223334
Q ss_pred HHHHHHhhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHHHHc
Q 006869 77 TLLLYIVSSKIKTPAQLEAAFSFFASTGSENFEVDEFEEAC 117 (628)
Q Consensus 77 ~l~~~I~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c 117 (628)
++.-.-.-+.-.+...+..+++.+-...++.|+.++|...+
T Consensus 85 f~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~I~~~E~~~~~ 125 (193)
T 1bjf_A 85 FIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIV 125 (193)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHCTTCSSCEEHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhcCCCCCCeECHHHHHHHH
Confidence 44332223333456678888887765555678888888776
No 135
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=28.07 E-value=57 Score=25.75 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
.++..+++.+-..+++.|+.++|...+. +|+.+|.+++...+..+
T Consensus 20 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 65 (90)
T 1avs_A 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEV 65 (90)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3456677666555556799998887753 56788999988776654
No 136
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=27.98 E-value=1.2e+02 Score=30.24 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=48.3
Q ss_pred CCCchhHHHHHHHHHhhCCCCCCCchhHHHHHHhhCCCCCHH-----hHHHHHHHHHhcCCC--CCCHHHHHH
Q 006869 50 DGCERRIGNLLYTVATKYPTNALVHRPTLLLYIVSSKIKTPA-----QLEAAFSFFASTGSE--NFEVDEFEE 115 (628)
Q Consensus 50 ~~~dk~~g~LLy~latk~~~~~~~~r~~l~~~I~~gklks~~-----Ql~aA~~yl~~~~~~--~id~~~Fe~ 115 (628)
.+.|.=.-.|+|-+...-+++...+..||-.++...++..+. ++.||+.|+.+.... .++.++|++
T Consensus 184 ~~ADd~LP~Liyvvika~~~~L~s~l~yI~~f~~~~~l~gE~gY~lt~l~aA~~fI~~l~~~~L~i~~~ef~~ 256 (267)
T 2efe_A 184 PGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEK 256 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH
T ss_pred CChhHHHHHHHHHHHhcCcccHHHHHHHHHHHcCccccCCHHHHHHHHHHHHHHHHHhCCHhhCCCCHHHHHH
Confidence 456888889999999776666566778888888888876553 489999999976422 356666665
No 137
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=27.62 E-value=72 Score=24.56 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHhcC--CCCCC-HHHHHHHcCCCceeCHHHHHHHHHH
Q 006869 90 PAQLEAAFSFFASTG--SENFE-VDEFEEACGVGVEVSSEDIELTVNE 134 (628)
Q Consensus 90 ~~Ql~aA~~yl~~~~--~~~id-~~~Fe~~cGVGv~vT~E~I~~~V~~ 134 (628)
...|+.|++||.+-. +.+++ .-+|-+.=| +|.|||+.+.+.
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKG----Lt~~EI~~Al~r 53 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKG----LTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTT----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcC----CCHHHHHHHHHc
Confidence 467889999997521 23333 467999999 899999988763
No 138
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=27.44 E-value=71 Score=27.42 Aligned_cols=46 Identities=13% Similarity=0.389 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 90 PAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 90 ~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
...+..|++.+-...++.|+.++|...+. +|..+|++++.+.+..+
T Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (143)
T 2obh_A 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEA 124 (143)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 35688888887666667899999988763 57779999999887654
No 139
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=27.41 E-value=1.3e+02 Score=32.52 Aligned_cols=48 Identities=17% Similarity=0.422 Sum_probs=36.4
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
.+..+|..|++.+-...++.|+.++|.+.+- +|..+|++||.+.++.+
T Consensus 372 d~eeeLreAFk~fDkDgdG~IS~eELr~vL~~lGe~LSdeEIdeLfke~ 420 (440)
T 3u0k_A 372 DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 420 (440)
T ss_dssp --CHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3457889999988666667899999987653 46788999998877654
No 140
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=27.24 E-value=67 Score=29.43 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=38.7
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHH
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~ 135 (628)
..+...+..|++.+-...++.|+.++|...+-+|..+|.+++...+..+
T Consensus 122 ~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~g~~~~~~~~~~l~~~~ 170 (196)
T 3dtp_E 122 TDEEDVIVNAFNLFDEGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEA 170 (196)
T ss_dssp SCCHHHHHHHHHTTCSSSSCCBHHHHHHHHHHSSSCCCHHHHHHHHHSS
T ss_pred CCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 3456788888887766666789999999998778889999988766543
No 141
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=26.94 E-value=83 Score=26.99 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcccCCCCchhHHHHHHHHHhhCCCCCCCchhHHHHHH-hhCCCCCHHhHHHHHHHHHhcCCCCCCHHHHH
Q 006869 36 TANLTAVIHEAAVTDGCERRIGNLLYTVATKYPTNALVHRPTLLLYI-VSSKIKTPAQLEAAFSFFASTGSENFEVDEFE 114 (628)
Q Consensus 36 ~~~L~~ii~~a~~~~~~dk~~g~LLy~latk~~~~~~~~r~~l~~~I-~~gklks~~Ql~aA~~yl~~~~~~~id~~~Fe 114 (628)
...|..++...+. ...+.....++-.. ........++.-+. ....-.+..++..|++.+-...++.|+.++|.
T Consensus 35 ~~el~~~l~~~g~-~~~~~~~~~~~~~~-----~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~ 108 (153)
T 2ovk_B 35 MEDLKDMFSSLGR-VPPDDELNAMLKEC-----PGQLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLK 108 (153)
T ss_dssp HHHHHHHTTTTTS-CCCHHHHHHHHHHS-----SSCCCSHHHHHTTTTTTTTCCCTTHHHHHHHTTCSSCSSCCCHHHHH
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHCCCCCCeEcHHHHH
Q ss_pred HHc-CCCceeCHHHHHHHHHHH
Q 006869 115 EAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 115 ~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
..+ -+|..+|++++...+..+
T Consensus 109 ~~l~~~g~~~~~~~~~~~~~~~ 130 (153)
T 2ovk_B 109 DLLENMGDNFSKEEIKNVWKDA 130 (153)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHC
T ss_pred HHHHHcCCCCCHHHHHHHHHHc
No 142
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=26.55 E-value=1.5e+02 Score=24.41 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=33.7
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~ 135 (628)
..|..+++|+..+...+++.+++-+.+| +|+..+....++.
T Consensus 2 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~----~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 2 NAVRQVEEYIEANWMRPITIEKLTALTG----ISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHT----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCCCHHHHHHHHC----CCHHHHHHHHHHH
Confidence 4688999999998877899999999999 6777777766665
No 143
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=26.36 E-value=1.6e+02 Score=26.39 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcC--------CCceeCHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEACG--------VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~cG--------VGv~vT~E~I~~~V~~~ 135 (628)
..+..+++.+-...++.|+.++|.+.+. .|...+.+++...+..+
T Consensus 109 ~~~~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (204)
T 3e3r_A 109 AVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNF 161 (204)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHCCCTTCHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCeEeHHHHHHHHccccCCccccCCCChHHHHHHHHHHh
Confidence 4566777766555556688888888775 35556666666655544
No 144
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=26.12 E-value=32 Score=28.64 Aligned_cols=53 Identities=8% Similarity=0.205 Sum_probs=41.8
Q ss_pred HHhHHH-HHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhhHhHHHhh
Q 006869 90 PAQLEA-AFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFEENKNTILEL 146 (628)
Q Consensus 90 ~~Ql~a-A~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~k~~l~~~ 146 (628)
...+.+ -+..++++| ..++.+++..+++ .|+.++...+|.+++.+.+=+++++
T Consensus 12 ~~~ie~~IL~l~~~~P-~GItd~~L~~~~p---~~~~~~r~~aIN~LL~~gkiel~K~ 65 (81)
T 2dk8_A 12 PVEIENRIIELCHQFP-HGITDQVIQNEMP---HIEAQQRAVAINRLLSMGQLDLLRS 65 (81)
T ss_dssp HHHHHHHHHHHHHHCS-SCEEHHHHHHHCT---TSCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHHHHHhCC-CCCCHHHHHHHCC---CCCHHHHHHHHHHHHHcCCeEEEec
Confidence 344433 456788887 6799999999997 4789999999999999888776654
No 145
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=25.87 E-value=2e+02 Score=23.94 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=39.9
Q ss_pred HHHHHHhhCCCCCHHhHHHHHHHHHhcC-CCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhh
Q 006869 77 TLLLYIVSSKIKTPAQLEAAFSFFASTG-SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (628)
Q Consensus 77 ~l~~~I~~gklks~~Ql~aA~~yl~~~~-~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~ 139 (628)
-+++.|.+..-.+.. ++.+|..+..+. ...-..==|--. -+...|||+|...|.+|-.+|
T Consensus 17 ~lv~~I~~~~~~~e~-~d~ll~~f~~~teHP~gSDLIfyP~--~~~e~spE~Iv~~ik~wRa~~ 77 (85)
T 1gxg_A 17 KIIEDIINCEGDEKK-QDDNLEHFISVTEHPSGSDLIYYPE--GNNDGSPEAVIKEIKEWRAAN 77 (85)
T ss_dssp HHHHHHHHTSSSSHH-HHHHHHHHHHTTCCTTTTHHHHSCC--TTCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCchh-HHHHHHHHHHhcCCCCcCceeecCC--CCCCCCHHHHHHHHHHHHHHc
Confidence 347888888866666 888888776543 122222222222 268899999999999987664
No 146
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=25.65 E-value=3.2e+02 Score=23.44 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
.+...+..|++.+-...++.|+.++|...+. +|..+|++++...+..+
T Consensus 92 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 140 (166)
T 2mys_B 92 DPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAF 140 (166)
T ss_pred CcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 3567788888877666667899999988863 56678999988777654
No 147
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=25.36 E-value=62 Score=28.54 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=37.6
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC---------CceeCHHHHHHHHHHHHHh
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACGV---------GVEVSSEDIELTVNEVFEE 138 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV---------Gv~vT~E~I~~~V~~~i~~ 138 (628)
..+..++..+++.+-...++.|+.++|...+.. |..+|++++.+.+..++..
T Consensus 64 ~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~g~~~s~~e~~~~~~~~f~~ 124 (143)
T 3a4u_B 64 MSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRD 124 (143)
T ss_dssp CCHHHHHHHHHHHTCTTCSSCEEHHHHHHTCC-------------CCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHHhhhccccCCCCCHHHHHHHHHHHHHH
Confidence 344567888888776666678999999998753 5679999999888776654
No 148
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=25.29 E-value=68 Score=25.24 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=31.8
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
.++..+++.+-...++.|+.++|...+- +|..+|.+++...+..+
T Consensus 9 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 54 (92)
T 2kn2_A 9 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEA 54 (92)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 4567777766655556788888887642 56778888888776654
No 149
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=25.19 E-value=1.6e+02 Score=24.90 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=40.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcCC--CceeCHHHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACGV--GVEVSSEDIELTVNEVFE 137 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGV--Gv~vT~E~I~~~V~~~i~ 137 (628)
.+...+..+++.+-...++.|+.++|...+.- |..+|.+++...+..++.
T Consensus 72 ~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (155)
T 3ll8_B 72 DKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTII 123 (155)
T ss_dssp CHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 34577888988886666678999999998864 888999999998888654
No 150
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=25.18 E-value=54 Score=26.67 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=37.1
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC----CCceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG----VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG----VGv~vT~E~I~~~V~~~ 135 (628)
....++..+++.+-...++.|+.++|...+. .|..+|.+++...+..+
T Consensus 38 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 1rwy_A 38 KSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAG 89 (109)
T ss_dssp SCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 3567889999988766667899999987753 27788999988777654
No 151
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=24.42 E-value=36 Score=25.68 Aligned_cols=48 Identities=23% Similarity=0.498 Sum_probs=33.0
Q ss_pred CCHHhHHHHHHHH-HhcCC-CCCCHHHHHHHcC-CCcee--CHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFF-ASTGS-ENFEVDEFEEACG-VGVEV--SSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl-~~~~~-~~id~~~Fe~~cG-VGv~v--T~E~I~~~V~~~ 135 (628)
++..++..+++.+ -...+ +.|+..+|...+. +|..+ |++++...+..+
T Consensus 2 ~~~~~l~~~F~~~~D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 54 (76)
T 1qx2_A 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEV 54 (76)
T ss_dssp CCHHHHHHHHHHHHTSSSCTTSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHH
T ss_pred ChHHHHHHHHHHHcccCCCcCeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHh
Confidence 5667888888877 55555 6688888776642 35666 777777766654
No 152
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=24.31 E-value=78 Score=24.18 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=34.6
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CC-ceeCHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG-VG-VEVSSEDIELTVNEV 135 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VG-v~vT~E~I~~~V~~~ 135 (628)
+..++. +++.+-...++.|+.++|...+. +| ..+|.+++...+..+
T Consensus 7 ~~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 54 (81)
T 1c7v_A 7 EEEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEA 54 (81)
T ss_dssp CHHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 456777 88877655556799999998874 56 788999988877654
No 153
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=24.22 E-value=29 Score=25.83 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=32.6
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~~ 135 (628)
+..++..+++.+-...++.|+.++|...+. +|..+|++++...+..+
T Consensus 4 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (71)
T 2b1u_A 4 GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREA 51 (71)
T ss_dssp THHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 456677777666555556788888888763 46778888877666543
No 154
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=24.13 E-value=68 Score=24.73 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHHH
Q 006869 92 QLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 92 Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
++..+++.+-...++.|+.++|...+ -+|..+|.+++...+..+
T Consensus 15 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (85)
T 2ktg_A 15 EYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDY 59 (85)
T ss_dssp HHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 35555655544455678998888776 357788999888777654
No 155
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=23.18 E-value=1.5e+02 Score=24.60 Aligned_cols=43 Identities=7% Similarity=0.145 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVFE 137 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~ 137 (628)
..+..++.|+..+...+++.+++-+.+| +|+-.+.....+...
T Consensus 5 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~----~S~~~l~r~fk~~~G 47 (108)
T 3oou_A 5 PIIQNVLSYITEHFSEGMSLKTLGNDFH----INAVYLGQLFQKEMG 47 (108)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHT----SCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHC----cCHHHHHHHHHHHHC
Confidence 4678899999998877899999999999 677777777766643
No 156
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=23.03 E-value=1e+02 Score=25.81 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=35.4
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHH
Q 006869 90 PAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVF 136 (628)
Q Consensus 90 ~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i 136 (628)
...|..+++|+..+...+++.+++-+.+| +|+..+.....+..
T Consensus 6 ~~~i~~~~~~i~~~~~~~~~~~~lA~~~~----~S~~~l~r~fk~~~ 48 (113)
T 3oio_A 6 QPKLTEAVSLMEANIEEPLSTDDIAYYVG----VSRRQLERLFKQYL 48 (113)
T ss_dssp CHHHHHHHHHHHTCSSSCCCHHHHHHHHT----SCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhhcCCCCHHHHHHHHC----cCHHHHHHHHHHHH
Confidence 46789999999998777899999999999 67777777766653
No 157
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=22.81 E-value=1.1e+02 Score=28.41 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=35.9
Q ss_pred CCCCChhHHHHHHHhcCCCchhHHHHhhCHHHHHHHHHHHHHcc
Q 006869 4 VSKGDKSEILELFLKIGLDDRTAKNTIANNKVTANLTAVIHEAA 47 (628)
Q Consensus 4 ~~~~~~~~~~~~f~~iGL~e~kaket~kN~kl~~~L~~ii~~a~ 47 (628)
-.-.+.+.+.++...+||+..+..+.+.++.+...+..-...+.
T Consensus 120 ~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~ 163 (208)
T 3kzq_A 120 MPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQDQLSLAK 163 (208)
T ss_dssp CCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 34457778899999999999999999999988888877666553
No 158
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=22.81 E-value=61 Score=26.41 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=37.1
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC----CCceeCHHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG----VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG----VGv~vT~E~I~~~V~~~ 135 (628)
.+..++..+++.+-...++.|+.++|...+. .|..+|.+++...+..+
T Consensus 39 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (109)
T 1bu3_A 39 KSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90 (109)
T ss_dssp SCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHh
Confidence 4567889999988766667899999887653 27788999998877654
No 159
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=22.48 E-value=94 Score=26.82 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=37.2
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHH
Q 006869 87 IKTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNE 134 (628)
Q Consensus 87 lks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~ 134 (628)
..+...+..|++.+-...++.|+.++|...+. +|..+|++++...+..
T Consensus 81 ~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~ 129 (159)
T 2ovk_C 81 GTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTF 129 (159)
T ss_dssp TCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34567888999888666667899999988763 5778899998877764
No 160
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=22.36 E-value=40 Score=25.55 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHhcCCCCCCHHHHHHHc-CCCceeCHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFASTGSENFEVDEFEEAC-GVGVEVSSEDIELTVNEV 135 (628)
Q Consensus 91 ~Ql~aA~~yl~~~~~~~id~~~Fe~~c-GVGv~vT~E~I~~~V~~~ 135 (628)
.++..+++.+-...++.|+.++|...+ .+|+.+|.+++...+..+
T Consensus 7 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 52 (77)
T 2joj_A 7 QEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEY 52 (77)
T ss_dssp HHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 345556665554445567777777665 235667777777665543
No 161
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=21.86 E-value=4.3e+02 Score=23.65 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=31.5
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHc---CCCceeCHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEAC---GVGVEVSSEDI 128 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~c---GVGv~vT~E~I 128 (628)
.+...+..|++.+-...++.|+.++|...+ +.|..+|+++.
T Consensus 119 ~~~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~~l~~~~~ 162 (191)
T 3k21_A 119 LSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDV 162 (191)
T ss_dssp CCHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHSSSCSCCCHHHH
T ss_pred ccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcCCCCCCCHhHH
Confidence 456788888888866666789999998875 46778888653
No 162
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=21.65 E-value=2.1e+02 Score=23.94 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCCHHhHHHHHHHHHhcC-CCCCCHHHHHHHcCCCceeCHHHHHHHHHHHHHhh
Q 006869 77 TLLLYIVSSKIKTPAQLEAAFSFFASTG-SENFEVDEFEEACGVGVEVSSEDIELTVNEVFEEN 139 (628)
Q Consensus 77 ~l~~~I~~gklks~~Ql~aA~~yl~~~~-~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i~~~ 139 (628)
-+++.|.+..-.|....+.+|..+..+. ...-..==|--. -|...|||+|...|.+|-.+|
T Consensus 17 ~lv~~I~~~~~~~e~e~d~ll~~f~~~teHP~gSDLIfyP~--~~~e~spE~Iv~~ik~wRa~~ 78 (86)
T 1fr2_A 17 QLVTTICNADTSSEEELVKLVTHFAEMTEHPSGSDLIYYPK--EGDDDSPSGIVNTVKQWRAAN 78 (86)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHCCTTTTHHHHSCC--TTCCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHhcCCCCcCceeecCC--CCCCCCHHHHHHHHHHHHHHc
Confidence 3478888887667888899998765432 111222222222 278899999999999997664
No 163
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=21.49 E-value=1.2e+02 Score=26.17 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=36.9
Q ss_pred HHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCc-eeCHHHHHHHHHHH
Q 006869 90 PAQLEAAFSFFASTGSENFEVDEFEEACG-VGV-EVSSEDIELTVNEV 135 (628)
Q Consensus 90 ~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv-~vT~E~I~~~V~~~ 135 (628)
..++..|++.+-...++.|+.++|...+. +|+ .+|.+++...+..+
T Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~~~ 86 (135)
T 3h4s_E 39 VSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREG 86 (135)
T ss_dssp HHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 46788899988666667899999998874 575 89999998887755
No 164
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=21.24 E-value=1.5e+02 Score=31.44 Aligned_cols=69 Identities=10% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHHc-CCCcee-----CHHHHHHHHHHHHHhhHhHHHhhccccchhhhHHHHHhhCCCCChhhhHHHHHHHHHHhcCC
Q 006869 112 EFEEAC-GVGVEV-----SSEDIELTVNEVFEENKNTILELRYRTNVGDLFAHVRKRLPWADPKIVKQLIDARMYELLGE 185 (628)
Q Consensus 112 ~Fe~~c-GVGv~v-----T~E~I~~~V~~~i~~~k~~l~~~ry~~n~g~ll~~vr~~LkWAd~~~vK~~vd~~~~~llgp 185 (628)
.+-... |+|+.+ |+|+|.++|+++++..+ -++|+-|...+-..+|+.. +++-.=...+++.+..+...
T Consensus 380 ~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~----~~~~r~~a~~l~~~~~~a~--~~gGsS~~~l~~~v~~~~~~ 453 (456)
T 2c1x_A 380 RMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK----GKKLRENLRALRETADRAV--GPKGSSTENFITLVDLVSKP 453 (456)
T ss_dssp HHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH----HHHHHHHHHHHHHHHHHHT--STTCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHHHHhh--hcCCcHHHHHHHHHHHHHhc
Confidence 344444 999876 78999999999997532 1356655666666666543 34433344566666555444
Q ss_pred C
Q 006869 186 R 186 (628)
Q Consensus 186 k 186 (628)
|
T Consensus 454 ~ 454 (456)
T 2c1x_A 454 K 454 (456)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=21.09 E-value=72 Score=27.08 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=34.1
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHHHHHHHcC-CCceeCHHHHHHHHHH
Q 006869 88 KTPAQLEAAFSFFASTGSENFEVDEFEEACG-VGVEVSSEDIELTVNE 134 (628)
Q Consensus 88 ks~~Ql~aA~~yl~~~~~~~id~~~Fe~~cG-VGv~vT~E~I~~~V~~ 134 (628)
.+...+..|++.+-...++.|+.++|...+. +|..+|++++...+..
T Consensus 80 ~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 127 (148)
T 1m45_A 80 AKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKG 127 (148)
T ss_dssp CCTHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSTTCCCHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3457788888877655556799999987753 5677898888766553
No 166
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=20.52 E-value=2.1e+02 Score=24.49 Aligned_cols=44 Identities=7% Similarity=0.162 Sum_probs=36.2
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHHHHHHHcCCCceeCHHHHHHHHHHHH
Q 006869 89 TPAQLEAAFSFFASTGSENFEVDEFEEACGVGVEVSSEDIELTVNEVF 136 (628)
Q Consensus 89 s~~Ql~aA~~yl~~~~~~~id~~~Fe~~cGVGv~vT~E~I~~~V~~~i 136 (628)
....+..+++||..+...+++.+++-+.+| +|+..+....++..
T Consensus 9 ~~~~i~~~~~~i~~~~~~~~sl~~lA~~~~----~S~~~l~r~fk~~~ 52 (129)
T 1bl0_A 9 DAITIHSILDWIEDNLESPLSLEKVSERSG----YSKWHLQRMFKKET 52 (129)
T ss_dssp CHHHHHHHHHHHHTTTTSCCCCHHHHHHSS----SCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCCCCCHHHHHHHHC----cCHHHHHHHHHHHH
Confidence 456789999999998777899999999999 57777777776664
No 167
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=20.47 E-value=36 Score=28.78 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=14.2
Q ss_pred HcCCEEEEeeecCCccccc
Q 006869 304 ERGGYCYLRYDDTNPEAEK 322 (628)
Q Consensus 304 ~~~G~~iLRidDtD~~r~~ 322 (628)
++|.+|++++.|+|+++..
T Consensus 6 ~~~~~~~~kfg~It~EeA~ 24 (96)
T 2f40_A 6 HHGSKWIKFTTNLTPEEAK 24 (96)
T ss_dssp ---CCEEECCCSCTTTTTH
T ss_pred cccchheeecCCCCHHHHH
Confidence 5788999999999988763
No 168
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=20.21 E-value=66 Score=25.05 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=32.8
Q ss_pred HhHHHHHHHHH-hcCCC-CCCHHHHHHHcC----CCceeCHHHHHHHHHHH
Q 006869 91 AQLEAAFSFFA-STGSE-NFEVDEFEEACG----VGVEVSSEDIELTVNEV 135 (628)
Q Consensus 91 ~Ql~aA~~yl~-~~~~~-~id~~~Fe~~cG----VGv~vT~E~I~~~V~~~ 135 (628)
..+..+++-+- ..+++ .|+.++|..... +|..++++++.+.+..+
T Consensus 10 ~~l~~~F~~~D~~d~~G~~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 60 (90)
T 1k8u_A 10 GLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDL 60 (90)
T ss_dssp HHHHHHHHHHHTSSSCTTEEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCcCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHh
Confidence 35667777666 35566 788888887765 78888888888777654
Done!