BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006870
(628 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7LBC6|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2
Length = 1761
Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 146/476 (30%), Positives = 220/476 (46%), Gaps = 96/476 (20%)
Query: 115 KNVEEMVSGCKVCDSETLLNTGSYDHS-LCQYAHREDRDGNFLYCPSSHDIRSEGIGNFR 173
K V+EMV G V D T HS LC DG L + + I FR
Sbjct: 1364 KEVKEMVMGLNVLDPHT-------SHSWLC--------DGRLLCLHDPSNKNNWKI--FR 1406
Query: 174 KHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV-D 232
+ W +G+PV+V V +W P E ++ D++ V ++C + + + D
Sbjct: 1407 ECWKQGQPVLVSGVHKKLKSELWKP--------EAFSQEFGDQD--VDLVNCRNCAIISD 1456
Query: 233 IELGEFIKGYSE--GRVR-EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIH 289
+++ +F G+ R+R EDG P +LKLKDWP + + + + LPL EY
Sbjct: 1457 VKVRDFWDGFEIICKRLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTK 1516
Query: 290 SRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGE 349
R G LN+A++LP Y ++ D+GPK+Y +YG DR NLH ++ D V ++V++G
Sbjct: 1517 -RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVG- 1574
Query: 350 VKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDE 409
+P E G HD E V K+
Sbjct: 1575 --IPIGE----------------------------------GAHD---EEVLKT------ 1589
Query: 410 IMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDF 469
++ G A+E V +R++ D EK PGA W ++ +D K+ E LR+
Sbjct: 1590 ------IDEGDADE--VTKQRIH---DGKEK--PGALWHIYAAKDAEKIRELLRK----V 1632
Query: 470 GRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVR 529
G G N P++ + YL+ +++L EE+GV+ W+ Q LG+AVFIPAG P QV
Sbjct: 1633 GEEQGQENPPDHDPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVH 1692
Query: 530 NLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAASSAI 585
NL S +++ DF+ PE V RL +E R L N H L+V I +A A+
Sbjct: 1693 NLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAV 1748
>sp|Q6ZPY7|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2
Length = 1562
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 219/476 (46%), Gaps = 96/476 (20%)
Query: 115 KNVEEMVSGCKVCDSETLLNTGSYDHS-LCQYAHREDRDGNFLYCPSSHDIRSEGIGNFR 173
K V+EM G V D T HS LC DG L + + I FR
Sbjct: 1165 KEVKEMAMGLNVLDPHT-------SHSWLC--------DGRLLCLHDPSNKNNWKI--FR 1207
Query: 174 KHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV-D 232
+ W +G+PV+V V +W P E ++ D++ V ++C + + + D
Sbjct: 1208 ECWKQGQPVLVSGVHKKLKSELWKP--------EAFSQEFGDQD--VDLVNCRNCAIISD 1257
Query: 233 IELGEFIKGYSE--GRVR-EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIH 289
+++ +F G+ R+R EDG P +LKLKDWP + + + + LPL EY
Sbjct: 1258 VKVRDFWDGFEIICKRLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTK 1317
Query: 290 SRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGE 349
R G LN+A++LP Y ++ D+GPK+Y +YG DR NLH ++ D V ++V++G
Sbjct: 1318 -RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVG- 1375
Query: 350 VKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDE 409
+P E G HD E V K+
Sbjct: 1376 --IPVGE----------------------------------GAHD---EEVLKT------ 1390
Query: 410 IMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDF 469
++ G A+E V +R++ D EK PGA W ++ +D K+ E LR+
Sbjct: 1391 ------IDEGDADE--VTKQRIH---DGKEK--PGALWHIYAAKDAEKIRELLRK----V 1433
Query: 470 GRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVR 529
G G N P++ + YL+ +++L EE+GV+ W+ Q LG+AVFIPAG P QV
Sbjct: 1434 GEEQGQENPPDHDPIHDQSWYLDQILRKRLFEEYGVQGWAIVQFLGDAVFIPAGAPHQVH 1493
Query: 530 NLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAASSAI 585
NL S +++ DF+ PE V RL +E R L N H L+V I +A A+
Sbjct: 1494 NLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAV 1549
>sp|Q6IRB8|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2
SV=1
Length = 1331
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 198/408 (48%), Gaps = 79/408 (19%)
Query: 172 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV 231
FR+ W +G+PVIV + ++ + +W P+ R E D++ N + D + + V
Sbjct: 975 FRECWKQGQPVIVSGIHNNLNSELWRPESFRR---EFGDQEADLVN--CRTNDIITGATV 1029
Query: 232 DIELGEFIKGYSE--GRVRED-GWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYI 288
G+F +G+ + R++ D G +LKLKDWP + +L + ++ +PL EY
Sbjct: 1030 ----GDFWEGFEDISARLKNDKGEAMVLKLKDWPPGEDFRDTMLSRFEDLMNNIPLPEYT 1085
Query: 289 HSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 348
R G LN+AA+LP Y ++ D+GPK+Y +YG DR NLH ++ D ++V++G
Sbjct: 1086 R-REGKLNLAARLPAYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDATNVMVYVG 1144
Query: 349 EVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDED 408
K G HD E
Sbjct: 1145 IPK---------------------------------------GEHD-----------QEQ 1154
Query: 409 EIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTD 468
E++ + ++ G A+E T+K Y + EK PGA W +F +D K+ ++L++ +
Sbjct: 1155 EVI--RTIQDGDADELTIKR-----YIEFKEK--PGALWHIFAAKDTEKIRQFLKKVAEE 1205
Query: 469 FGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQV 528
G + +D P++ + YL+ +++L +E GV+ W+ Q LG+AVFIPAG P QV
Sbjct: 1206 QGHENPPDHD----PIHDQSWYLDNTLRKRLLQEHGVQGWAIVQFLGDAVFIPAGAPHQV 1261
Query: 529 RNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN---DHEAKLQVLEV 573
NL S +++ DF+ PE V L +E R L + +HE KLQV V
Sbjct: 1262 HNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNV 1309
>sp|Q5ZIX8|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1
Length = 1325
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 113/418 (27%), Positives = 198/418 (47%), Gaps = 78/418 (18%)
Query: 172 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGI-RETADEKTKDENRIVKAIDCLDWSE 230
FR+ W +G+PV+V V + +W P+ + ++ D N I+
Sbjct: 969 FRECWKQGQPVMVSGVHHKLNADLWRPESFRKEFGQQEVDLVNCRTNEIITGA------- 1021
Query: 231 VDIELGEFIKGYSE--GRVR-EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEY 287
+G+F G+ + R+R E+G P +LKLKDWP + + + + +PL EY
Sbjct: 1022 ---TVGDFWDGFEDISSRLRTEEGEPMVLKLKDWPPGEDFRDMMPSRFDDLMKNIPLPEY 1078
Query: 288 IHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHM 347
R G LN+A++LP+Y ++ D+GPK+Y +YG DR NLH ++ D ++V++
Sbjct: 1079 TR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYV 1137
Query: 348 GEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDE 407
G +P + A E
Sbjct: 1138 G---IPKGQ-----------------------------------------------ADQE 1147
Query: 408 DEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWT 467
+E++ + ++ G ++E T+K +++ EK PGA W ++ +D K+ E+L++
Sbjct: 1148 EEVL--KTIQDGDSDELTIKR-----FTESREK--PGALWHIYAAKDTEKIREFLKKVAE 1198
Query: 468 DFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQ 527
+ G+ + V +D P++ + YL+ +++L +E+GV+ W+ Q LG+ VFIPAG P Q
Sbjct: 1199 EQGQENPVDHD----PIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQ 1254
Query: 528 VRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAASSAI 585
V NL S +++ DF+ PE V L +E R L + H L+V + +A A+
Sbjct: 1255 VHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDAV 1312
>sp|Q5HZN1|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2
SV=1
Length = 1334
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 197/408 (48%), Gaps = 79/408 (19%)
Query: 172 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV 231
FR+ W +G+PV+V V ++ + +W P+ R E D++ N + D + + V
Sbjct: 978 FRECWKQGQPVMVSGVHNNLNSELWRPESFRR---EFGDQEADLVN--CRTNDIITGATV 1032
Query: 232 DIELGEFIKGYSE--GRVRED-GWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYI 288
G+F G+ + GR++ D G +LKLKDWP + +L + ++ +PL EY
Sbjct: 1033 ----GDFWDGFEDIPGRLKNDTGESMVLKLKDWPPGEDFRDTMLSRFEDLMNNIPLPEYT 1088
Query: 289 HSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 348
R G LN+AA+LP Y ++ D+GPK+Y +YG DR NLH ++ D ++V++G
Sbjct: 1089 R-REGKLNLAARLPTYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVG 1147
Query: 349 EVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDED 408
K G HD + E +
Sbjct: 1148 IPK---------------------------------------GEHDQDQEVL-------- 1160
Query: 409 EIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTD 468
+ ++ G A+E T+K + + EK PGA W ++ +D K+ ++L++ +
Sbjct: 1161 -----RTIQDGDADELTIKR-----FIEFKEK--PGALWHIYAAKDTEKIRQFLKKVAEE 1208
Query: 469 FGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQV 528
G + +D P++ + YL+ +++L +E GV+ W+ Q LG+AVFIPAG P QV
Sbjct: 1209 EGHENPPDHD----PIHDQSWYLDNILRKRLLQEHGVQGWAIVQFLGDAVFIPAGAPHQV 1264
Query: 529 RNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN---DHEAKLQVLEV 573
NL S +++ DF+ PE V L +E R L + +HE KLQV V
Sbjct: 1265 HNLYSCIKVAEDFVSPEHVKHCFCLTQEFRYLSHTHTNHEDKLQVKNV 1312
>sp|Q9Y4C1|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4
Length = 1321
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/417 (26%), Positives = 191/417 (45%), Gaps = 77/417 (18%)
Query: 172 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRET-ADEKTKDENRIVKAIDCLDWSE 230
FR+ W +G+PV+V V + +W P+ + E D N I+
Sbjct: 966 FRECWKQGQPVMVSGVHHKLNSELWKPESFRKEFGEQEVDLVNCRTNEIITGA------- 1018
Query: 231 VDIELGEFIKGYSE--GRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYI 288
+G+F G+ + R++ + P +LKLKDWP + + + ++ +PL EY
Sbjct: 1019 ---TVGDFWDGFEDVPNRLKNEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYT 1075
Query: 289 HSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 348
R G LN+A++LP+Y ++ D+GPK+Y +YG DR NLH ++ D ++V+
Sbjct: 1076 R-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVY-- 1132
Query: 349 EVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDED 408
V +P + E+ E+
Sbjct: 1133 -VGIPKGQCEQ-----------------------------------------------EE 1144
Query: 409 EIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTD 468
E++ + ++ G ++E T+K + K PGA W ++ +D K+ E+L++ +
Sbjct: 1145 EVL--KTIQDGDSDELTIKRF-------IEGKEKPGALWHIYAAKDTEKIREFLKKVSEE 1195
Query: 469 FGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQV 528
G+ + +D P++ + YL+ +++L +E+GV+ W+ Q LG+ VFIPAG P QV
Sbjct: 1196 QGQENPADHD----PIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQV 1251
Query: 529 RNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAASSAI 585
NL S +++ DF+ PE V L +E R L H L+V + +A A+
Sbjct: 1252 HNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAV 1308
>sp|Q63679|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2
SV=1
Length = 1214
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 197/425 (46%), Gaps = 82/425 (19%)
Query: 172 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRET-ADEKTKDENRIVKAIDCLDWSE 230
FR+ W +G+PV+V V + +W P+ + E D N I+
Sbjct: 850 FRECWKQGQPVMVSGVHHKLNTELWKPESFRKEFGEQEVDLVNCRTNEIITGA------- 902
Query: 231 VDIELGEFIKGYSEGRVR----EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLE 286
+G+F G+ + R ++ P +LKLKDWP + + + ++ +PL E
Sbjct: 903 ---TVGDFWDGFEDVPNRLKNEKEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPE 959
Query: 287 YIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVH 346
Y R G LN+A++LP+Y ++ D+GPK+Y +YG DR NLH ++ D ++V+
Sbjct: 960 YTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVY 1018
Query: 347 MGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATD 406
+G +P + E+
Sbjct: 1019 VG---IPKGQCEQ----------------------------------------------- 1028
Query: 407 EDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHW 466
E+E++ + ++ G ++E T+K + K PGA W ++ +D K+ E+L++
Sbjct: 1029 EEEVL--RTIQDGDSDELTIKRF-------IEGKEKPGALWHIYAAKDTEKIREFLKKVS 1079
Query: 467 TDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPF 526
+ G+ + +D P++ + YL+ +++L +E+GV+ W+ Q LG+ VFIPAG P
Sbjct: 1080 EEQGQENPADHD----PIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPH 1135
Query: 527 QVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP---NDHEAKLQVLEVGKISLYAASS 583
QV NL S +++ DF+ PE V L +E R L +HE KLQV V ++ A +
Sbjct: 1136 QVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRHLSQTHTNHEDKLQVKNVIYHAVKDAVA 1195
Query: 584 AIKEV 588
+K V
Sbjct: 1196 MLKAV 1200
>sp|Q6PCM1|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1
Length = 1323
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/419 (26%), Positives = 192/419 (45%), Gaps = 79/419 (18%)
Query: 172 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRET-ADEKTKDENRIVKAIDCLDWSE 230
FR+ W +G+PV+V V + +W P+ + E D N I+
Sbjct: 966 FRECWKQGQPVMVSGVHHKLNTELWKPESFRKEFGEQEVDLVNCRTNEIITGA------- 1018
Query: 231 VDIELGEFIKGYSE--GRVREDGW--PEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLE 286
+G+F G+ + R++ D P +LKLKDWP + + + ++ +PL E
Sbjct: 1019 ---TVGDFWDGFEDVPNRLKNDKEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPE 1075
Query: 287 YIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVH 346
Y R G LN+A++LP+Y ++ D+GPK+Y +YG DR NLH ++ D ++V+
Sbjct: 1076 YTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVY 1134
Query: 347 MGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATD 406
+G +P + E+
Sbjct: 1135 VG---IPKGQCEQ----------------------------------------------- 1144
Query: 407 EDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHW 466
E+E++ + ++ G ++E T+K + K PGA W ++ +D K+ E+L++
Sbjct: 1145 EEEVL--RTIQDGDSDELTIKRF-------IEGKEKPGALWHIYAAKDTEKIREFLKKVS 1195
Query: 467 TDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPF 526
+ G+ + +D P++ + YL+ +++L +E+GV+ W+ Q LG+ VFIPAG P
Sbjct: 1196 EEQGQDNPADHD----PIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPH 1251
Query: 527 QVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAASSAI 585
QV NL S +++ DF+ PE V L +E R L H L+V + +A A+
Sbjct: 1252 QVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAV 1310
>sp|Q15652|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C
OS=Homo sapiens GN=JMJD1C PE=1 SV=2
Length = 2540
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 48/260 (18%)
Query: 353 PTTEDEKIQSSSRESEVNESVGDPEKVSGEGSF------------PDL-----------S 389
P+ ED K +R ++ +S+ PE + EG F PDL +
Sbjct: 2265 PSGEDFKTMMPARYEDLLKSLPLPEYCNPEGKFNLASHLPGFFVRPDLGPRLCSAYGVVA 2324
Query: 390 LGGHDVNNEHVEKSATDEDEIMEDQGVETGTA-----------EEKT---VKSERLNGYS 435
HD+ ++ +D I+ G+ G EE+ + +RL S
Sbjct: 2325 AKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSKAGILKKFEEEDLDDILRKRLKDSS 2384
Query: 436 DVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDH 495
++ PGA W ++ +DV K+ E+L++ + G+ P+ + Y+N
Sbjct: 2385 EI-----PGALWHIYAGKDVDKIREFLQK----ISKEQGLEVLPEHDPIRDQSWYVNKKL 2435
Query: 496 KRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAE 555
+++L EE+GV + Q LG+A+ +PAG QV+N S +Q+ DF+ PE + E+ L +
Sbjct: 2436 RQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQ 2495
Query: 556 EIRCLPN--DHEAKLQVLEV 573
E+R L +++ KLQV +
Sbjct: 2496 ELRLLKEEINYDDKLQVKNI 2515
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 14/183 (7%)
Query: 172 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV 231
F++ W +G+P +V V ++S+W + I + + ++C D
Sbjct: 2182 FKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDHQAD----------LLNCKDSIIS 2231
Query: 232 DIELGEFIKGYSEGRVRE---DGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYI 288
+ + EF G+ E R+ G +LKLKDWPS + + + + LPL EY
Sbjct: 2232 NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 2291
Query: 289 HSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 348
+ G N+A+ LP + ++ D+GP++ +YG D NLH + D+V +LV++G
Sbjct: 2292 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVG 2350
Query: 349 EVK 351
K
Sbjct: 2351 IAK 2353
>sp|Q69ZK6|JHD2C_MOUSE Probable JmjC domain-containing histone demethylation protein 2C
OS=Mus musculus GN=Jmjd1c PE=1 SV=3
Length = 2350
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Query: 443 PGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEE 502
PGA W ++ +DV K+ E+L++ + G+ P+ + Y+N +++L EE
Sbjct: 2197 PGALWHIYAGKDVDKIREFLQK----ISKEQGLEVLPEHDPIRDQSWYVNRKLRQRLLEE 2252
Query: 503 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN 562
+GV + Q LG+A+ +PAG QV+N S VQ+ DF+ PE + ++ L +E+R L
Sbjct: 2253 YGVRACTLIQFLGDAIVLPAGTLHQVQNFHSCVQVTEDFVSPEHLVQSFHLTQELRLLKE 2312
Query: 563 --DHEAKLQVLEV 573
+++ KLQV +
Sbjct: 2313 EINYDDKLQVKNI 2325
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 172 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRE-TADEKTKDENRIVKAIDCLDWSE 230
F++ W +G+P +V V ++S+W + I + AD ++C D
Sbjct: 1992 FKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGDHQAD-----------LLNCKDSIV 2040
Query: 231 VDIELGEFIKGYSEGRVRED---GWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEY 287
+ + EF G+ E R+ G +LKLKD PS + + +F+ LPL EY
Sbjct: 2041 SNANVKEFWDGFEEVSKRQKNKGGETVVLKLKDCPSGEDFKAMMPTRYEDFLRCLPLPEY 2100
Query: 288 IHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHM 347
+ G N+A+ LP + ++ D+GP++ +YG D NLH D+V +LV++
Sbjct: 2101 CNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHIEASDVVNVLVYV 2159
Query: 348 GEVK 351
G K
Sbjct: 2160 GIAK 2163
>sp|Q61645|HAIR_MOUSE Protein hairless OS=Mus musculus GN=Hr PE=2 SV=2
Length = 1182
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 10/144 (6%)
Query: 447 WDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVE 506
W VFR QD ++ +L+ P G P YL+ +R+L+EE+GV
Sbjct: 1047 WHVFRAQDAQRIRRFLQ-----MVCPAGAG---TLEPGAPGSCYLDAGLRRRLREEWGVS 1098
Query: 507 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEA 566
W+ Q GEAV +PAG P QV+ L ST+ + FL PE+ + +L + LP DH
Sbjct: 1099 CWTLLQAPGEAVLVPAGAPHQVQGLVSTISVTQHFLSPETSALSAQLYHQGASLPPDH-- 1156
Query: 567 KLQVLEVGKISLYAASSAIKEVQK 590
++ ++ + A +A+ +Q+
Sbjct: 1157 RMLYAQMDRAVFQAVKAAVGALQE 1180
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 42/198 (21%)
Query: 168 GIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLD 227
G F++HW +G+PV+V + + +S+W E V+ + L
Sbjct: 851 GFHLFQEHWRQGQPVLVSGIQKTLRLSLW------------GMEALGTLGGQVQTLTALG 898
Query: 228 WSE-VDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKP---------- 276
+ +++ F +G+S R KL + LL H+
Sbjct: 899 PPQPTNLDSTAFWEGFSHPETRP-------KLDE-------GSVLLLHRTLGDKDASRVQ 944
Query: 277 EFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGN-SVKNLHF 335
S LPL EY + G LN+A+ LP + + P+++ +YG RG+ KNL
Sbjct: 945 NLASSLPLPEYC-AHQGKLNLASYLPLGLTLHPLEPQLWAAYGVNSH--RGHLGTKNLCV 1001
Query: 336 NMPDMVYLLVHMGEVKLP 353
+ D++ +LVH E +LP
Sbjct: 1002 EVSDLISILVH-AEAQLP 1018
>sp|P97609|HAIR_RAT Protein hairless OS=Rattus norvegicus GN=Hr PE=2 SV=2
Length = 1181
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 447 WDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVE 506
W VFR QD ++ +L+ P G P YL+ +R+L+EE+GV
Sbjct: 1046 WHVFRAQDAQRIRRFLQ-----MVCPAGAGT---LEPGAPGSCYLDSGLRRRLREEWGVS 1097
Query: 507 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEA 566
W+ Q GEAV +PAG P QV+ L ST+ + FL PE+ + +L + LP DH
Sbjct: 1098 CWTLLQAPGEAVLVPAGAPHQVQGLVSTISVTQHFLSPETSALSAQLCHQGASLPPDH-- 1155
Query: 567 KLQVLEVGKISLYAASSAIKEVQK 590
++ ++ + A A+ +Q+
Sbjct: 1156 RMLYAQMDRAVFQAVKVAVGTLQE 1179
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 42/198 (21%)
Query: 168 GIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLD 227
G F++HW +G+PV+V + + +S+W E V+ + L
Sbjct: 850 GFRLFQEHWRQGQPVLVSGIQKTLRLSLW------------GMEALGTLGGQVQTLTALG 897
Query: 228 WSE-VDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKP---------- 276
+ ++ F KG+S R KL + LL H+P
Sbjct: 898 PPQPTSLDSTAFWKGFSHPEARP-------KLDE-------GSVLLLHRPLGDKDESRVE 943
Query: 277 EFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGN-SVKNLHF 335
S LPL EY + G LN+A+ LP + + P+++ +YG RG+ KNL
Sbjct: 944 NLASSLPLPEYC-AHQGKLNLASYLPLGLTLHPLEPQLWAAYGVNSH--RGHLGTKNLCV 1000
Query: 336 NMPDMVYLLVHMGEVKLP 353
+ D++ +LVH E +LP
Sbjct: 1001 EVSDLISILVH-AEAQLP 1017
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 2 CCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSVGKEEFSENDRIQDTENASEQVK 61
CC+ C + + H C +C + LC++C + GK R Q T++ +++
Sbjct: 593 CCSRCHHGLFNTHWRCSHCSHRLCVACGRI-----AGAGKNREKTGSREQRTDDCAQEAG 647
Query: 62 TSKLRLNLLE 71
+ L L +
Sbjct: 648 HAACSLILTQ 657
>sp|O43593|HAIR_HUMAN Protein hairless OS=Homo sapiens GN=HR PE=1 SV=5
Length = 1189
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 447 WDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVE 506
W VFR QD ++ +L+ P G P YL+ +R+L+EE+GV
Sbjct: 1054 WHVFRAQDAQRIRRFLQ-----MVCPAGAG---ALEPGAPGSCYLDAGLRRRLREEWGVS 1105
Query: 507 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPND 563
W+ Q GEAV +PAG P QV+ L STV + FL PE+ + +L + LP D
Sbjct: 1106 CWTLLQAPGEAVLVPAGAPHQVQGLVSTVSVTQHFLSPETSALSAQLCHQGPSLPPD 1162
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 44/220 (20%)
Query: 148 REDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRE 207
R G L+ G F++HW +G+PV+V + + ++W
Sbjct: 838 RLPPPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLW----------- 886
Query: 208 TADEKTKDENRIVKAIDCLDWSEVDIELGE--FIKGYSEGRVREDGWPEMLKLKDWPSPS 265
E V+A+ L + LG F +G+S WPE+ D
Sbjct: 887 -GTEALGALGGQVQALSPLGPPQPS-SLGSTTFWEGFS--------WPELRPKSD----- 931
Query: 266 ASEEFLLYHKP----------EFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIY 315
LL H+ + LPL EY + G LN+A+ LP + P+++
Sbjct: 932 -EGSVLLLHRALGDEDTSRVENLAASLPLPEYC-ALHGKLNLASYLPPGLALRPLEPQLW 989
Query: 316 MSYGTYEELDRGN-SVKNLHFNMPDMVYLLVHMGEVKLPT 354
+YG RG+ KNL + D+V +LVH + LP
Sbjct: 990 AAYGVSPH--RGHLGTKNLCVEVADLVSILVHA-DTPLPA 1026
>sp|Q8NFW9|MYRIP_HUMAN Rab effector MyRIP OS=Homo sapiens GN=MYRIP PE=1 SV=2
Length = 859
Score = 36.6 bits (83), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 2 CCNICRIP---IIDYHRHCGNCMYDLCLSCC 29
CC C P +++ R CG+C +++C SCC
Sbjct: 63 CCMRCCSPFTFLVNTKRQCGDCKFNVCKSCC 93
>sp|Q8WXB4|ZN606_HUMAN Zinc finger protein 606 OS=Homo sapiens GN=ZNF606 PE=2 SV=1
Length = 792
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 502 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP 561
E G EPWS EQ + CP VRNL+S + +F E ++L I
Sbjct: 115 EQGEEPWSVEQACPQRT-----CPEWVRNLESKALIPAQSIFEEEQSHGMKLERYI--WD 167
Query: 562 NDHEAKLQVLEVG-KISLYAASSAIKEVQKLVLDPKLGAELGFEDPNLTATVSENL 616
+ ++L+VL ++ +Y + + Q + + ++ ++ E L A S+NL
Sbjct: 168 DPWFSRLEVLGCKDQLEMYHMNQSTAMRQMVFMQKQVLSQRSSEFCGLGAEFSQNL 223
>sp|Q8K3I4|MYRIP_MOUSE Rab effector MyRIP OS=Mus musculus GN=Myrip PE=1 SV=1
Length = 856
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 2 CCNICRIP---IIDYHRHCGNCMYDLCLSCC 29
CC C P +++ R CG C + +C SCC
Sbjct: 63 CCMRCCSPFTFLVNARRRCGECKFSVCKSCC 93
>sp|Q7TNY7|MYRIP_RAT Rab effector MyRIP OS=Rattus norvegicus GN=Myrip PE=1 SV=1
Length = 856
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 2 CCNICRIP---IIDYHRHCGNCMYDLCLSCC 29
CC C P +++ R CG C + +C SCC
Sbjct: 63 CCMRCCSPFTFLVNARRRCGECKFSVCKSCC 93
>sp|Q9H9V9|JMJD4_HUMAN JmjC domain-containing protein 4 OS=Homo sapiens GN=JMJD4 PE=2 SV=2
Length = 463
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 500 KEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRC 559
+ + P Q GE VF+P+G QV NL T+ + +++ ++ R ++ C
Sbjct: 289 RNQLAGPPLEITQEAGEMVFVPSGWHHQVHNLDDTISINHNWVNGFNLANMWRFLQQELC 348
Query: 560 ------------LPN-DHEAKLQVLEVGKIS---LYAASSAIKEVQKLVLDPKL---GAE 600
+P+ H ++ + I+ Y I E + LVL GA
Sbjct: 349 AVQEEVSEWRDSMPDWHHHCQVIMRSCSGINFEEFYHFLKVIAEKRLLVLREAAAEDGAG 408
Query: 601 LGFEDPNL-TATVSENLENLMKH 622
LGFE ++E L +L+ H
Sbjct: 409 LGFEQAAFDVGRITEVLASLVAH 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,252,237
Number of Sequences: 539616
Number of extensions: 11265209
Number of successful extensions: 30762
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 30655
Number of HSP's gapped (non-prelim): 95
length of query: 628
length of database: 191,569,459
effective HSP length: 124
effective length of query: 504
effective length of database: 124,657,075
effective search space: 62827165800
effective search space used: 62827165800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)