Query 006870
Match_columns 628
No_of_seqs 151 out of 209
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 15:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 9E-162 2E-166 1340.9 25.2 513 1-594 363-885 (889)
2 PF02373 JmjC: JmjC domain, hy 99.6 1.1E-15 2.4E-20 134.6 5.2 82 444-541 31-114 (114)
3 PF13621 Cupin_8: Cupin-like d 99.1 1E-11 2.3E-16 122.0 1.1 40 506-545 207-249 (251)
4 KOG2131 Uncharacterized conser 97.2 0.00036 7.8E-09 75.1 4.8 61 502-562 262-323 (427)
5 smart00558 JmjC A domain famil 97.2 0.00032 6.9E-09 55.9 3.1 54 277-348 3-56 (57)
6 cd02340 ZZ_NBR1_like Zinc fing 95.8 0.0054 1.2E-07 47.4 1.9 30 1-30 1-31 (43)
7 cd02335 ZZ_ADA2 Zinc finger, Z 95.6 0.0073 1.6E-07 47.7 1.9 31 1-31 1-33 (49)
8 cd02339 ZZ_Mind_bomb Zinc fing 95.2 0.012 2.5E-07 46.1 1.9 30 1-30 1-32 (45)
9 cd02249 ZZ Zinc finger, ZZ typ 95.0 0.014 3E-07 45.4 1.9 32 2-33 2-34 (46)
10 KOG2130 Phosphatidylserine-spe 94.6 0.02 4.4E-07 61.2 2.5 61 487-549 241-304 (407)
11 PF07883 Cupin_2: Cupin domain 93.7 0.03 6.5E-07 45.2 1.3 26 509-534 38-63 (71)
12 COG1917 Uncharacterized conser 93.5 0.046 1E-06 50.2 2.2 55 480-539 59-115 (131)
13 cd02341 ZZ_ZZZ3 Zinc finger, Z 92.6 0.066 1.4E-06 42.5 1.6 32 2-33 2-37 (48)
14 cd02345 ZZ_dah Zinc finger, ZZ 92.4 0.079 1.7E-06 42.0 1.8 33 1-33 1-35 (49)
15 PF00569 ZZ: Zinc finger, ZZ t 92.2 0.061 1.3E-06 41.9 0.9 31 2-32 6-38 (46)
16 smart00291 ZnF_ZZ Zinc-binding 92.1 0.091 2E-06 40.5 1.8 35 1-35 5-40 (44)
17 cd02344 ZZ_HERC2 Zinc finger, 92.0 0.1 2.2E-06 41.1 1.9 31 1-31 1-33 (45)
18 COG0662 {ManC} Mannose-6-phosp 91.4 0.15 3.2E-06 47.3 2.7 40 507-546 74-113 (127)
19 cd02338 ZZ_PCMF_like Zinc fing 91.1 0.12 2.6E-06 40.9 1.6 31 1-31 1-33 (49)
20 cd02337 ZZ_CBP Zinc finger, ZZ 90.2 0.16 3.4E-06 39.1 1.4 29 2-31 2-31 (41)
21 TIGR03214 ura-cupin putative a 88.6 0.23 5E-06 51.7 1.7 31 503-533 213-243 (260)
22 PRK09943 DNA-binding transcrip 85.6 0.67 1.4E-05 45.3 3.0 60 480-545 124-183 (185)
23 cd02343 ZZ_EF Zinc finger, ZZ 84.8 0.61 1.3E-05 37.3 1.9 31 1-31 1-32 (48)
24 PF07649 C1_3: C1-like domain; 84.8 0.44 9.6E-06 33.8 1.0 28 1-28 1-29 (30)
25 cd02334 ZZ_dystrophin Zinc fin 84.5 0.64 1.4E-05 37.1 1.9 34 1-34 1-36 (49)
26 PRK13290 ectC L-ectoine syntha 83.7 0.8 1.7E-05 42.9 2.5 37 507-545 74-110 (125)
27 PF01050 MannoseP_isomer: Mann 80.9 0.98 2.1E-05 43.7 2.0 22 513-534 107-128 (151)
28 COG4101 Predicted mannose-6-ph 80.5 1.6 3.5E-05 41.3 3.2 25 509-533 89-113 (142)
29 TIGR00218 manA mannose-6-phosp 79.9 0.91 2E-05 48.0 1.6 15 513-527 156-170 (302)
30 KOG1356 Putative transcription 79.4 0.59 1.3E-05 55.6 -0.1 31 2-32 231-261 (889)
31 PRK15131 mannose-6-phosphate i 78.0 1.1 2.4E-05 49.4 1.6 18 510-527 239-256 (389)
32 PRK04190 glucose-6-phosphate i 76.7 1.9 4.1E-05 43.4 2.6 42 506-548 118-159 (191)
33 KOG4582 Uncharacterized conser 74.5 1.6 3.4E-05 46.2 1.5 30 2-31 154-185 (278)
34 cd02342 ZZ_UBA_plant Zinc fing 72.5 2.5 5.5E-05 33.2 1.8 31 1-31 1-33 (43)
35 PF13248 zf-ribbon_3: zinc-rib 72.2 2 4.4E-05 29.7 1.1 24 1-24 3-26 (26)
36 COG1482 ManA Phosphomannose is 71.9 2 4.3E-05 46.4 1.5 21 510-530 160-180 (312)
37 PF00190 Cupin_1: Cupin; Inte 70.9 4.1 8.9E-05 38.2 3.2 38 509-546 81-125 (144)
38 PLN02288 mannose-6-phosphate i 69.6 2.4 5.1E-05 47.1 1.5 17 511-527 254-270 (394)
39 TIGR01479 GMP_PMI mannose-1-ph 68.9 2.7 5.9E-05 47.3 1.8 30 505-534 412-441 (468)
40 PF13240 zinc_ribbon_2: zinc-r 63.5 3.8 8.1E-05 27.9 1.0 23 2-24 1-23 (23)
41 PF08007 Cupin_4: Cupin superf 62.4 6.3 0.00014 42.2 3.0 39 508-546 176-214 (319)
42 PRK15460 cpsB mannose-1-phosph 60.6 5.3 0.00011 45.5 2.1 29 505-533 421-449 (478)
43 PF02041 Auxin_BP: Auxin bindi 57.7 6 0.00013 38.9 1.7 41 487-532 75-115 (167)
44 smart00835 Cupin_1 Cupin. This 56.9 8.9 0.00019 36.0 2.7 58 481-538 47-107 (146)
45 PRK13305 sgbH 3-keto-L-gulonat 56.0 11 0.00023 38.7 3.3 61 535-605 6-67 (218)
46 PTZ00194 60S ribosomal protein 54.7 5.2 0.00011 38.8 0.7 43 481-525 18-60 (143)
47 KOG0457 Histone acetyltransfer 53.8 4.8 0.0001 45.1 0.4 29 2-30 16-46 (438)
48 TIGR03214 ura-cupin putative a 52.9 11 0.00024 39.3 2.8 47 482-533 77-123 (260)
49 PRK13306 ulaD 3-keto-L-gulonat 52.5 16 0.00035 37.1 3.8 65 535-609 6-71 (216)
50 TIGR03404 bicupin_oxalic bicup 52.4 11 0.00024 41.5 2.8 80 481-562 262-342 (367)
51 COG5114 Histone acetyltransfer 49.5 4.4 9.4E-05 44.0 -0.8 29 2-30 7-37 (432)
52 KOG2508 Predicted phospholipas 48.0 23 0.0005 39.3 4.3 38 170-207 34-74 (437)
53 PF10571 UPF0547: Uncharacteri 47.7 12 0.00026 26.3 1.5 23 2-24 2-24 (26)
54 PF01238 PMI_typeI: Phosphoman 47.1 6.7 0.00014 43.1 0.2 17 511-527 253-269 (373)
55 PRK11171 hypothetical protein; 46.8 12 0.00025 39.2 1.9 28 505-532 98-125 (266)
56 PF02938 GAD: GAD domain; Int 46.2 6.7 0.00014 34.8 0.0 41 480-530 53-93 (95)
57 PF09567 RE_MamI: MamI restric 42.3 11 0.00024 39.8 0.9 21 2-22 84-104 (314)
58 PRK01191 rpl24p 50S ribosomal 42.2 10 0.00023 35.8 0.6 41 482-524 18-58 (120)
59 PRK10371 DNA-binding transcrip 41.0 21 0.00045 37.7 2.7 34 502-535 58-91 (302)
60 KOG2107 Uncharacterized conser 40.8 26 0.00056 35.1 3.1 55 456-527 80-135 (179)
61 PRK14892 putative transcriptio 40.1 15 0.00033 33.6 1.3 22 2-23 23-51 (99)
62 PRK13264 3-hydroxyanthranilate 39.5 23 0.00049 35.6 2.5 63 486-550 55-118 (177)
63 KOG3905 Dynein light intermedi 39.3 14 0.0003 40.8 1.0 67 449-525 243-313 (473)
64 PF08271 TF_Zn_Ribbon: TFIIB z 39.2 14 0.00031 28.2 0.8 23 1-23 1-28 (43)
65 TIGR03037 anthran_nbaC 3-hydro 38.9 23 0.0005 35.0 2.4 45 506-550 68-112 (159)
66 KOG2583 Ubiquinol cytochrome c 38.7 17 0.00038 40.6 1.7 44 141-185 160-206 (429)
67 cd02336 ZZ_RSC8 Zinc finger, Z 38.6 18 0.00038 28.6 1.3 32 2-33 2-34 (45)
68 TIGR03404 bicupin_oxalic bicup 36.7 34 0.00073 37.7 3.6 54 506-563 108-166 (367)
69 PRK13307 bifunctional formalde 36.5 41 0.0009 37.5 4.2 66 535-609 175-241 (391)
70 PF13216 DUF4024: Protein of u 35.9 19 0.0004 26.6 0.9 21 327-347 3-23 (35)
71 KOG4286 Dystrophin-like protei 35.5 16 0.00034 43.8 0.8 34 3-36 606-641 (966)
72 PF05899 Cupin_3: Protein of u 35.5 20 0.00044 30.3 1.3 17 509-525 45-61 (74)
73 PF03107 C1_2: C1 domain; Int 35.1 19 0.00042 25.6 1.0 27 2-28 2-29 (30)
74 PF08990 Docking: Erythronolid 34.7 24 0.00053 25.2 1.4 17 454-470 3-19 (27)
75 COG0269 SgbH 3-hexulose-6-phos 34.5 50 0.0011 34.3 4.1 51 535-595 6-57 (217)
76 PRK11171 hypothetical protein; 34.3 26 0.00057 36.7 2.2 32 502-533 217-248 (266)
77 PF12852 Cupin_6: Cupin 33.5 25 0.00053 34.1 1.7 43 480-532 37-79 (186)
78 PF02311 AraC_binding: AraC-li 30.5 36 0.00079 29.5 2.1 46 503-549 36-83 (136)
79 TIGR02297 HpaA 4-hydroxyphenyl 29.4 41 0.0009 34.3 2.6 31 503-533 57-87 (287)
80 TIGR01080 rplX_A_E ribosomal p 29.1 31 0.00067 32.4 1.5 44 481-526 13-56 (114)
81 PRK15457 ethanolamine utilizat 27.3 36 0.00078 35.6 1.7 46 481-531 171-216 (233)
82 PRK13503 transcriptional activ 27.2 34 0.00073 34.7 1.5 31 503-533 48-78 (278)
83 PF06249 EutQ: Ethanolamine ut 25.4 53 0.0011 32.3 2.4 21 505-525 110-130 (152)
84 PRK13501 transcriptional activ 25.0 41 0.00089 34.7 1.7 29 503-531 51-79 (290)
85 KOG1280 Uncharacterized conser 23.3 33 0.00073 37.8 0.7 30 1-30 9-40 (381)
86 COG0184 RpsO Ribosomal protein 21.5 91 0.002 28.2 2.9 57 490-572 2-58 (89)
87 PRK13502 transcriptional activ 21.3 99 0.0021 31.6 3.6 30 503-532 51-80 (282)
88 PRK14559 putative protein seri 20.1 51 0.0011 39.1 1.4 35 2-36 3-41 (645)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=9.3e-162 Score=1340.85 Aligned_cols=513 Identities=34% Similarity=0.553 Sum_probs=435.9
Q ss_pred CccCCCCCccccccccCCCCCcchhhhhhHHhhhcccCCCCcccc---------cccccccccchhhhhhhhhhhhcccc
Q 006870 1 MCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSVGKEEFS---------ENDRIQDTENASEQVKTSKLRLNLLE 71 (628)
Q Consensus 1 m~Cd~C~tsI~D~HRsC~~CsydLCL~CC~elr~g~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (628)
.|||+|.|||.|+||+||+|||.+||.||.+||+|.+..+.+... ++|...- ++.... .+. . .
T Consensus 363 ~~~~~~~~si~~l~r~cP~~s~~~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~-~~~~~s--~~~---~--~ 434 (889)
T KOG1356|consen 363 LYCDHCATSIGDLKRSCPDSSYAICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPI-EPSLSS--VSV---D--E 434 (889)
T ss_pred ccccccccchhhccccCCCccccccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCcccc-ccccCC--CCC---C--C
Confidence 489999999999999999999999999999999998876654322 1221110 000000 000 0 0
Q ss_pred CCCCcccCCCCCccCCCCCCCCCCCCccccccccccchHHHHHHHHHHHHhcCCCcCCCCcc-CCCCCCcccccccccCC
Q 006870 72 KFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLL-NTGSYDHSLCQYAHRED 150 (628)
Q Consensus 72 ~~~~W~a~~dgsi~Cpp~e~ggCg~~~L~L~~if~~~~i~~L~~~aee~~~~~~~~~~~~~~-~~~~~~~~~~~aa~re~ 150 (628)
. +. ++++|+|.|-|...+||+...|.|+|++|..|.+.|+.+||.-+...-..-..... .+....+.++++|.|+.
T Consensus 435 ~-~~--~~~ng~~r~l~~~~~g~~~~~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~ 511 (889)
T KOG1356|consen 435 P-SS--ANENGSLRDLLLSLAGCLDRGLKLKRILPNILDSIIASVVENKLTSKLSKPPLRLCRSSQDGSGLLLSAASHSW 511 (889)
T ss_pred C-cc--cccccchhhcccccCccchhhhhhhhcCchHHHHHHHHHHHhhcccccCCchhhcCccccccccCccccCCCCc
Confidence 1 12 88899999999999999999999999999999999999999988651111111111 11112335789999999
Q ss_pred CCCCceecCCccccccccHHHHHHHhhcCCCEEEecccccCCCCCCChhhhhhhhhhhcccccccccCceEEEecCCCCe
Q 006870 151 RDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSE 230 (628)
Q Consensus 151 s~dn~ly~P~~~d~~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~~~~~~v~aidCld~~e 230 (628)
+.|||||||.+.+++.+|+.|||+||++|||||||||++++++++|+||+|||+|++.-..-..-.+.++.++||++
T Consensus 512 ~cdn~Ll~l~~d~~~~~n~~~FQEhWkqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~--- 588 (889)
T KOG1356|consen 512 LCDNRLLSLKVDPLNQNNLKHFQEHWKQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD--- 588 (889)
T ss_pred CCCCceecCccCccchhHHHHHHHHHhcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh---
Confidence 99999999999899999999999999999999999999999999999999999998875444434556677777777
Q ss_pred eecccccccccccCCcccCCCCceeeeeCCCCCchhhHHhhhhcchHHHhcCCCccccCCCCccchhcccCCCCCCCCCC
Q 006870 231 VDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDV 310 (628)
Q Consensus 231 v~i~i~qFf~Gy~~gr~~~~g~p~mLKLKDWPps~~Fee~lP~h~~efi~~LP~~EYt~pr~G~LNLAs~LP~~~lkPDL 310 (628)
++.+||.||++|+++++|||+|||||||||+++|+++||+||+|||++|||||||| |+|+||||++||.+|++|||
T Consensus 589 ---~fwegFe~~~kr~~~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDL 664 (889)
T KOG1356|consen 589 ---NFWEGFEGYSKRLKSENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDL 664 (889)
T ss_pred ---hHHHhhcccccCcccccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCC
Confidence 68999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCcccccccccccccCCCCcceeeeeccccceeeeecccccCCCchhHHhhhccccccccccCCCCCccCCCCCCCCCCC
Q 006870 311 GPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSL 390 (628)
Q Consensus 311 GPK~YIAYG~~eelg~gdSvTkLH~DmSDAVNIL~h~~ev~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 390 (628)
|||||||||+++++|||||||||||||||||||||||++++....| |++++++.. +|++.++..
T Consensus 665 GPk~y~AYG~~~e~gr~~gtTnLH~dvSDaVNILvyv~e~~~~~~~---~~~~~k~~~-------------~~~~de~~~ 728 (889)
T KOG1356|consen 665 GPKLYNAYGVSTELGRGDGTTNLHLDVSDAVNILVYVGEPPGQIEQ---IAKVLKKIQ-------------EGDLDEITR 728 (889)
T ss_pred CchhhhhccccccccCCCCceeeceehhhhhhheeeeccCCchHHh---HHHHHHhhh-------------hcchhhhhh
Confidence 9999999999999999999999999999999999999999884444 444433222 121111100
Q ss_pred CCCCCCcccccccccchhhhhhhcCcccccccccccccccccCCCCCCCCCCCceEEEEecCCChHHHHHHHHHHHHhhC
Q 006870 391 GGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFG 470 (628)
Q Consensus 391 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~GAlWdIFrreDv~KLreyL~kh~~Ef~ 470 (628)
. +. .+..+.+|||||||||||||||||||+||++|||
T Consensus 729 ------------------------------------~--~~-----~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~ 765 (889)
T KOG1356|consen 729 ------------------------------------S--RI-----SSVSETPGALWHIFRAQDVPKIREYLRKVCKEQG 765 (889)
T ss_pred ------------------------------------h--hc-----cccccCCcchhhhhhhcchHHHHHHHHHhhHHhc
Confidence 0 00 0345789999999999999999999999999999
Q ss_pred CCCCCCCCcccCCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcCHHHH
Q 006870 471 RPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEA 550 (628)
Q Consensus 471 ~~~~~~~~~v~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec 550 (628)
|. +.+|+||||||+||||.+||+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.||
T Consensus 766 ~~----~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec 841 (889)
T KOG1356|consen 766 HE----VPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSEC 841 (889)
T ss_pred CC----CCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHH
Confidence 93 34589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHhccC
Q 006870 551 VRLAEEIRCLPNDHEAKLQVLEVGKISLYAASSAIKEVQKLVLD 594 (628)
Q Consensus 551 ~rLteEfR~Lp~~H~~K~d~Levkkm~lya~~~avke~~~l~~~ 594 (628)
+|||+|||+||++|.+++||||||+|++||+..||++|+.+..+
T Consensus 842 ~rLT~EfR~Lp~~h~~~eDKLqvK~mi~hAVk~Av~~L~~~~s~ 885 (889)
T KOG1356|consen 842 FRLTQEFRQLPQNHKNHEDKLQVKNMIYHAVKDAVGTLKEAESS 885 (889)
T ss_pred HHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999998765
No 2
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.59 E-value=1.1e-15 Score=134.64 Aligned_cols=82 Identities=27% Similarity=0.478 Sum_probs=62.0
Q ss_pred ceEEEEecCCChHHHHHHHHHHHHhhCCCCCCCCCcccCC--CcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeC
Q 006870 444 GAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHP--LYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIP 521 (628)
Q Consensus 444 GAlWdIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hP--IHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIP 521 (628)
..+|-+++++|.+|+++++++.. . ..+| ++.+...+.++. ..+.||+.|+|+|++||+||||
T Consensus 31 ~k~W~~v~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~p~~----l~~~gi~~~~~~Q~~Ge~V~i~ 94 (114)
T PF02373_consen 31 SKVWYIVPPEDADKFEKFLRSKE--S----------QNCPQFLDHKNIFVSPEQ----LKKAGIPVYRFVQKPGEFVFIP 94 (114)
T ss_dssp EEEEEEE-GGGHHHHHHHHHHHH--H----------HHSTTGGCTGGEEEGHHH----HHHTTS--EEEEEETT-EEEE-
T ss_pred ceEeEEechhhhhhHHHHHhhcc--c----------ccccccccccccccceee----eeccCcccccceECCCCEEEEC
Confidence 35999999999999999999762 1 1123 344555555443 6779999999999999999999
Q ss_pred CCCcccccccCCcceeeccc
Q 006870 522 AGCPFQVRNLQSTVQLGLDF 541 (628)
Q Consensus 522 AGCPHQVRNLkSCIKVAlDF 541 (628)
+|++|||.|+-.||++|.+|
T Consensus 95 pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 95 PGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp TT-EEEEEESSSEEEEEEEE
T ss_pred CCceEEEEeCCceEEEEecC
Confidence 99999999999999999998
No 3
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=99.13 E-value=1e-11 Score=122.03 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=33.2
Q ss_pred cceEEEeecCceEEeCCCCccccccc--CC-cceeeccccCCc
Q 006870 506 EPWSFEQHLGEAVFIPAGCPFQVRNL--QS-TVQLGLDFLFPE 545 (628)
Q Consensus 506 epWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 545 (628)
.+|.+++.+||++|||+|..|||+|| .. ||.|...|.++.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 89999999999999999999999999 76 999999998764
No 4
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=97.20 E-value=0.00036 Score=75.13 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=51.1
Q ss_pred HhCccceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcCHHHHHH-HHHHHhcCCC
Q 006870 502 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVR-LAEEIRCLPN 562 (628)
Q Consensus 502 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~r-LteEfR~Lp~ 562 (628)
++.+.+.++-|.+||+||+|.|-=|||-||-.+|.|...++--=|+..=.+ |-+++-.+.+
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~e 323 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALAE 323 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhhh
Confidence 345677899999999999999999999999999999999999999887776 3345544443
No 5
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=97.17 E-value=0.00032 Score=55.93 Aligned_cols=54 Identities=33% Similarity=0.448 Sum_probs=43.2
Q ss_pred HHHhcCCCccccCCCCccchhcccCCCCCCCCCCCCcccccccccccccCCCCcceeeeeccccceeeeecc
Q 006870 277 EFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 348 (628)
Q Consensus 277 efi~~LP~~EYt~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelg~gdSvTkLH~DmSDAVNIL~h~~ 348 (628)
..+..||+ .+||+.+++.....|+. +|+.+|. .+|+|.+|+|+.|.||++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~------~~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGM------AGSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeC------CCCccceeEcCCCeEEEEEecC
Confidence 35567777 68999999988887877 6666665 3789999999999999987653
No 6
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=95.80 E-value=0.0054 Score=47.40 Aligned_cols=30 Identities=40% Similarity=0.893 Sum_probs=27.9
Q ss_pred CccCCCCCccccccccCCCC-CcchhhhhhH
Q 006870 1 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQ 30 (628)
Q Consensus 1 m~Cd~C~tsI~D~HRsC~~C-sydLCL~CC~ 30 (628)
+.||.|+++|.-+.-.|..| .||||..|-.
T Consensus 1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCCcCcCCeEECCCCCCccchHHhhC
Confidence 47999999999999999999 7999999976
No 7
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.56 E-value=0.0073 Score=47.67 Aligned_cols=31 Identities=32% Similarity=0.893 Sum_probs=28.3
Q ss_pred CccCCCCCcccc-ccccCCCC-CcchhhhhhHH
Q 006870 1 MCCNICRIPIID-YHRHCGNC-MYDLCLSCCQD 31 (628)
Q Consensus 1 m~Cd~C~tsI~D-~HRsC~~C-sydLCL~CC~e 31 (628)
+.||+|...|.. ++-.|..| .||||+.|-..
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 469999999999 88899999 99999999873
No 8
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=95.21 E-value=0.012 Score=46.15 Aligned_cols=30 Identities=40% Similarity=1.074 Sum_probs=27.9
Q ss_pred CccCCCC-CccccccccCCCC-CcchhhhhhH
Q 006870 1 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQ 30 (628)
Q Consensus 1 m~Cd~C~-tsI~D~HRsC~~C-sydLCL~CC~ 30 (628)
|.||.|+ .+|+-+.-.|..| .||||..|-.
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 6899999 7999999999999 7999999987
No 9
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=95.03 E-value=0.014 Score=45.36 Aligned_cols=32 Identities=38% Similarity=0.879 Sum_probs=29.1
Q ss_pred ccCCCCCccccccccCCCCC-cchhhhhhHHhh
Q 006870 2 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLR 33 (628)
Q Consensus 2 ~Cd~C~tsI~D~HRsC~~Cs-ydLCL~CC~elr 33 (628)
.||.|..+|...+=.|..|. ||||..|-.+-.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 69999999999999999999 999999987544
No 10
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=94.63 E-value=0.02 Score=61.18 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=49.8
Q ss_pred cceeeCHHHHHHH---HHHhCccceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcCHHH
Q 006870 487 EVVYLNGDHKRKL---KEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGE 549 (628)
Q Consensus 487 Q~fYLd~~hk~kL---keEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 549 (628)
-+||-+-.-|-+| -+||. |-...|.+||.||||.|.=|=|-||.-.|-|++.|+|=||.+-
T Consensus 241 itwf~~~y~rt~~Pswp~E~k--PIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~ 304 (407)
T KOG2130|consen 241 ITWFSTIYPRTQLPSWPDEYK--PIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPF 304 (407)
T ss_pred echhhhccccccCCCCccccC--CceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCce
Confidence 3455555555553 44554 8889999999999999999999999999999999999999753
No 11
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=93.73 E-value=0.03 Score=45.16 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=22.6
Q ss_pred EEEeecCceEEeCCCCcccccccCCc
Q 006870 509 SFEQHLGEAVFIPAGCPFQVRNLQST 534 (628)
Q Consensus 509 tf~Q~lGEAVFIPAGCPHQVRNLkSC 534 (628)
++.=..||+++||+|++|+++|..+.
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 55557899999999999999998764
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.46 E-value=0.046 Score=50.18 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=42.7
Q ss_pred ccCCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccccCCc--ceeec
Q 006870 480 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQST--VQLGL 539 (628)
Q Consensus 480 v~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAl 539 (628)
-.||-++|.+|..+-. =+|.++.=+++=+.||.|+||||.+|-+.|..+. +.+++
T Consensus 59 H~hp~~~~~~~Vl~G~-----~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 59 HTHPLGEQTIYVLEGE-----GTVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred ccCCCcceEEEEEecE-----EEEEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEE
Confidence 3689889999998763 2244445556667899999999999999999999 55544
No 13
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=92.61 E-value=0.066 Score=42.53 Aligned_cols=32 Identities=38% Similarity=0.912 Sum_probs=28.5
Q ss_pred ccCCCCC-ccccccccCCCCC---cchhhhhhHHhh
Q 006870 2 CCNICRI-PIIDYHRHCGNCM---YDLCLSCCQDLR 33 (628)
Q Consensus 2 ~Cd~C~t-sI~D~HRsC~~Cs---ydLCL~CC~elr 33 (628)
-||+|.. +|+-+.-.|..|. ||||..|-..-+
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~ 37 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE 37 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC
Confidence 4999998 9999999999998 999999987543
No 14
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=92.39 E-value=0.079 Score=42.04 Aligned_cols=33 Identities=36% Similarity=0.834 Sum_probs=28.5
Q ss_pred CccCCCCC-ccccccccCCCC-CcchhhhhhHHhh
Q 006870 1 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDLR 33 (628)
Q Consensus 1 m~Cd~C~t-sI~D~HRsC~~C-sydLCL~CC~elr 33 (628)
+.||+|+. +|.-++-.|..| .||||+.|-..-+
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~ 35 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR 35 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence 57999998 999998899988 4999999987443
No 15
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=92.16 E-value=0.061 Score=41.94 Aligned_cols=31 Identities=42% Similarity=0.910 Sum_probs=24.6
Q ss_pred ccCCCCC-ccccccccCCCCC-cchhhhhhHHh
Q 006870 2 CCNICRI-PIIDYHRHCGNCM-YDLCLSCCQDL 32 (628)
Q Consensus 2 ~Cd~C~t-sI~D~HRsC~~Cs-ydLCL~CC~el 32 (628)
.||.|++ +|+-..-.|..|. ||||..|-.+-
T Consensus 6 ~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g 38 (46)
T PF00569_consen 6 TCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKG 38 (46)
T ss_dssp E-SSS-SSSEESSEEEESSSSS-EEEHHHHHH-
T ss_pred ECcCCCCCcCcCCeEECCCCCCCchhhHHHhCc
Confidence 5999999 9999999999998 99999998763
No 16
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=92.13 E-value=0.091 Score=40.54 Aligned_cols=35 Identities=37% Similarity=0.845 Sum_probs=30.0
Q ss_pred CccCCCCCccccccccCCCC-CcchhhhhhHHhhhc
Q 006870 1 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQDLREA 35 (628)
Q Consensus 1 m~Cd~C~tsI~D~HRsC~~C-sydLCL~CC~elr~g 35 (628)
+.||.|+.+|....=.|..| .||||..|-.+-|.+
T Consensus 5 ~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 5 YSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred cCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcC
Confidence 35999999999998899999 899999998855443
No 17
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=91.96 E-value=0.1 Score=41.08 Aligned_cols=31 Identities=32% Similarity=0.924 Sum_probs=27.5
Q ss_pred CccCCCCC-ccccccccCCCCC-cchhhhhhHH
Q 006870 1 MCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQD 31 (628)
Q Consensus 1 m~Cd~C~t-sI~D~HRsC~~Cs-ydLCL~CC~e 31 (628)
+-||.|.+ +|+-..-.|..|. ||||..|-..
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 46999985 8999999999998 9999999765
No 18
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.37 E-value=0.15 Score=47.30 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=30.3
Q ss_pred ceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcC
Q 006870 507 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPES 546 (628)
Q Consensus 507 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 546 (628)
.=.++=+.||+|+||||.||.++|.-+.-=+.++=-+|+.
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~ 113 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPY 113 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCc
Confidence 5667778999999999999999999994433344335544
No 19
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=91.07 E-value=0.12 Score=40.91 Aligned_cols=31 Identities=29% Similarity=0.745 Sum_probs=27.3
Q ss_pred CccCCCC-CccccccccCCCC-CcchhhhhhHH
Q 006870 1 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 31 (628)
Q Consensus 1 m~Cd~C~-tsI~D~HRsC~~C-sydLCL~CC~e 31 (628)
|.||.|+ .+|.-..-.|..| .||||..|-..
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 6799999 8999888888888 69999999873
No 20
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=90.20 E-value=0.16 Score=39.08 Aligned_cols=29 Identities=38% Similarity=1.051 Sum_probs=25.1
Q ss_pred ccCCCCCccccccccCCCC-CcchhhhhhHH
Q 006870 2 CCNICRIPIIDYHRHCGNC-MYDLCLSCCQD 31 (628)
Q Consensus 2 ~Cd~C~tsI~D~HRsC~~C-sydLCL~CC~e 31 (628)
-||.|.. |+-..+.|..| .||||..|-..
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 3999988 66699999999 89999999764
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=88.56 E-value=0.23 Score=51.68 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=24.8
Q ss_pred hCccceEEEeecCceEEeCCCCcccccccCC
Q 006870 503 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 533 (628)
Q Consensus 503 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 533 (628)
|.+..=...=..||+|||||||||+..|.-+
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~ 243 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGGR 243 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecCC
Confidence 4455556666789999999999999999753
No 22
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=85.59 E-value=0.67 Score=45.25 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=44.5
Q ss_pred ccCCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccccCCcceeeccccCCc
Q 006870 480 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 545 (628)
Q Consensus 480 v~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 545 (628)
..|+- ++.+|+-.-. -++-|..=++.-..||.++||||.||..+|..++-=+++-+++|-
T Consensus 124 ~~h~~-~E~~~Vl~G~-----~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 124 IKHQG-EEIGTVLEGE-----IVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred cccCC-cEEEEEEEeE-----EEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 34543 5666665442 135566777888999999999999999999988766777777774
No 23
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=84.84 E-value=0.61 Score=37.29 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=25.6
Q ss_pred CccCCCCCccccccccCCCCC-cchhhhhhHH
Q 006870 1 MCCNICRIPIIDYHRHCGNCM-YDLCLSCCQD 31 (628)
Q Consensus 1 m~Cd~C~tsI~D~HRsC~~Cs-ydLCL~CC~e 31 (628)
+.||.|...|.-+.-.|-.|. ||||..|-..
T Consensus 1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 469999988887777787774 9999999864
No 24
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=84.80 E-value=0.44 Score=33.82 Aligned_cols=28 Identities=32% Similarity=0.882 Sum_probs=12.7
Q ss_pred CccCCCCCcccc-ccccCCCCCcchhhhh
Q 006870 1 MCCNICRIPIID-YHRHCGNCMYDLCLSC 28 (628)
Q Consensus 1 m~Cd~C~tsI~D-~HRsC~~CsydLCL~C 28 (628)
+.|+.|+.+|.. +.=+|+.|.|+|.+.|
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhc
Confidence 369999999998 7888999999999987
No 25
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=84.50 E-value=0.64 Score=37.15 Aligned_cols=34 Identities=44% Similarity=0.955 Sum_probs=27.9
Q ss_pred CccCCCCC-ccccccccCCCC-CcchhhhhhHHhhh
Q 006870 1 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDLRE 34 (628)
Q Consensus 1 m~Cd~C~t-sI~D~HRsC~~C-sydLCL~CC~elr~ 34 (628)
+-||.|+. +|.-+.-.|..| .||||..|-..-+.
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~ 36 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRT 36 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCc
Confidence 35999995 799998889888 49999999875443
No 26
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=83.72 E-value=0.8 Score=42.91 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=27.2
Q ss_pred ceEEEeecCceEEeCCCCcccccccCCcceeeccccCCc
Q 006870 507 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 545 (628)
Q Consensus 507 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 545 (628)
.=++.=..||+++||||-||+.+|...|.=++. ++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v--~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV--FNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE--ECCC
Confidence 344556789999999999999999865544433 5553
No 27
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=80.88 E-value=0.98 Score=43.73 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.6
Q ss_pred ecCceEEeCCCCcccccccCCc
Q 006870 513 HLGEAVFIPAGCPFQVRNLQST 534 (628)
Q Consensus 513 ~lGEAVFIPAGCPHQVRNLkSC 534 (628)
..||.|+||+|+.|++.|..+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5699999999999999998765
No 28
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=80.47 E-value=1.6 Score=41.28 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.6
Q ss_pred EEEeecCceEEeCCCCcccccccCC
Q 006870 509 SFEQHLGEAVFIPAGCPFQVRNLQS 533 (628)
Q Consensus 509 tf~Q~lGEAVFIPAGCPHQVRNLkS 533 (628)
+.+-..||...||+|.|||--||.+
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCC
Confidence 5677899999999999999999974
No 29
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=79.89 E-value=0.91 Score=48.03 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=13.7
Q ss_pred ecCceEEeCCCCccc
Q 006870 513 HLGEAVFIPAGCPFQ 527 (628)
Q Consensus 513 ~lGEAVFIPAGCPHQ 527 (628)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 469999999999996
No 30
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=79.35 E-value=0.59 Score=55.60 Aligned_cols=31 Identities=26% Similarity=0.920 Sum_probs=28.3
Q ss_pred ccCCCCCccccccccCCCCCcchhhhhhHHh
Q 006870 2 CCNICRIPIIDYHRHCGNCMYDLCLSCCQDL 32 (628)
Q Consensus 2 ~Cd~C~tsI~D~HRsC~~CsydLCL~CC~el 32 (628)
.|+.|-|++|+||-.|++|.+-+||.|=+--
T Consensus 231 mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~ 261 (889)
T KOG1356|consen 231 MCDRCETTLFNIHWRCPRCGFGVCLDCYRKW 261 (889)
T ss_pred hhhhhcccccceeEEccccCCeeeecchhhc
Confidence 5999999999999999999999999886643
No 31
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=78.03 E-value=1.1 Score=49.45 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=15.4
Q ss_pred EEeecCceEEeCCCCccc
Q 006870 510 FEQHLGEAVFIPAGCPFQ 527 (628)
Q Consensus 510 f~Q~lGEAVFIPAGCPHQ 527 (628)
+.=++|||+|||||.||=
T Consensus 239 v~l~pGeaifipAg~~HA 256 (389)
T PRK15131 239 VKLNPGEAMFLFAETPHA 256 (389)
T ss_pred EEeCCCCEEEeCCCCCeE
Confidence 344689999999999997
No 32
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=76.66 E-value=1.9 Score=43.41 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=31.3
Q ss_pred cceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcCHH
Q 006870 506 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 548 (628)
Q Consensus 506 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 548 (628)
+.+.+.=..||+|+||+|..|++.|.-+.-=+.+- +.|...+
T Consensus 118 ~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~-v~p~~~~ 159 (191)
T PRK04190 118 EARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA-CYPADAG 159 (191)
T ss_pred cEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE-EEcCCcc
Confidence 37888999999999999999999998765433333 4444443
No 33
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=74.47 E-value=1.6 Score=46.23 Aligned_cols=30 Identities=33% Similarity=0.774 Sum_probs=26.5
Q ss_pred ccCCCCC-ccccccccCCCCC-cchhhhhhHH
Q 006870 2 CCNICRI-PIIDYHRHCGNCM-YDLCLSCCQD 31 (628)
Q Consensus 2 ~Cd~C~t-sI~D~HRsC~~Cs-ydLCL~CC~e 31 (628)
-||+|.+ .|+-.--.|.-|. ||||-.|=..
T Consensus 154 ~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~ 185 (278)
T KOG4582|consen 154 PCDNCGKPGIVGARYKCTVCPDYDLCERCEAG 185 (278)
T ss_pred cCCCccCCccccceeeecCCCccchhHHhhcC
Confidence 4999999 9999888898884 9999999764
No 34
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=72.47 E-value=2.5 Score=33.19 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=26.3
Q ss_pred CccCCCC-CccccccccCCCC-CcchhhhhhHH
Q 006870 1 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 31 (628)
Q Consensus 1 m~Cd~C~-tsI~D~HRsC~~C-sydLCL~CC~e 31 (628)
+-||.|. .||+=+.-.|..| .||||-.|-.+
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 4699999 5999999899876 69999999763
No 35
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=72.20 E-value=2 Score=29.74 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.5
Q ss_pred CccCCCCCccccccccCCCCCcch
Q 006870 1 MCCNICRIPIIDYHRHCGNCMYDL 24 (628)
Q Consensus 1 m~Cd~C~tsI~D~HRsC~~CsydL 24 (628)
|+|.+|.+.|-+=.|-||+|...|
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCcCCcccccChhhCCCC
Confidence 689999999999999999998754
No 36
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=71.88 E-value=2 Score=46.37 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=17.2
Q ss_pred EEeecCceEEeCCCCcccccc
Q 006870 510 FEQHLGEAVFIPAGCPFQVRN 530 (628)
Q Consensus 510 f~Q~lGEAVFIPAGCPHQVRN 530 (628)
+.=++|||+|||||.||=.-.
T Consensus 160 v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EecCCCCEEEecCCCceeecc
Confidence 455789999999999997443
No 37
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=70.91 E-value=4.1 Score=38.18 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=26.4
Q ss_pred EEEee----cCceEEeCCCCccccccc--CCcceeecccc-CCcC
Q 006870 509 SFEQH----LGEAVFIPAGCPFQVRNL--QSTVQLGLDFL-FPES 546 (628)
Q Consensus 509 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDFV-SPEn 546 (628)
.+.|. .||.++||+|.||=+.|. .+.+.++.=+. +|++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 45555 899999999999999999 56666655444 3434
No 38
>PLN02288 mannose-6-phosphate isomerase
Probab=69.56 E-value=2.4 Score=47.15 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.8
Q ss_pred EeecCceEEeCCCCccc
Q 006870 511 EQHLGEAVFIPAGCPFQ 527 (628)
Q Consensus 511 ~Q~lGEAVFIPAGCPHQ 527 (628)
.=.+|||||||||-||=
T Consensus 254 ~L~PGeaifl~ag~~HA 270 (394)
T PLN02288 254 KLNPGEALYLGANEPHA 270 (394)
T ss_pred ecCCCCEEEecCCCCce
Confidence 34589999999999996
No 39
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=68.88 E-value=2.7 Score=47.28 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=25.0
Q ss_pred ccceEEEeecCceEEeCCCCcccccccCCc
Q 006870 505 VEPWSFEQHLGEAVFIPAGCPFQVRNLQST 534 (628)
Q Consensus 505 VepWtf~Q~lGEAVFIPAGCPHQVRNLkSC 534 (628)
+..=++.=..||.|+||+|.||+.+|.-+.
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~ 441 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGKI 441 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCCC
Confidence 445566778999999999999999998764
No 40
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=63.55 E-value=3.8 Score=27.92 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.0
Q ss_pred ccCCCCCccccccccCCCCCcch
Q 006870 2 CCNICRIPIIDYHRHCGNCMYDL 24 (628)
Q Consensus 2 ~Cd~C~tsI~D~HRsC~~CsydL 24 (628)
||.+|...|-|=.+-|++|...|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 79999999999999999998765
No 41
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=62.40 E-value=6.3 Score=42.16 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=30.1
Q ss_pred eEEEeecCceEEeCCCCcccccccCCcceeeccccCCcC
Q 006870 508 WSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPES 546 (628)
Q Consensus 508 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 546 (628)
..|+=.+||..+||.|++|++.....|+.+++-|..|=.
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~ 214 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTW 214 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCch
Confidence 357778999999999999999999999999999988843
No 42
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=60.59 E-value=5.3 Score=45.45 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.5
Q ss_pred ccceEEEeecCceEEeCCCCcccccccCC
Q 006870 505 VEPWSFEQHLGEAVFIPAGCPFQVRNLQS 533 (628)
Q Consensus 505 VepWtf~Q~lGEAVFIPAGCPHQVRNLkS 533 (628)
|..=++.=..||.|+||+|.||+.+|.-.
T Consensus 421 idg~~~~L~~GDSi~ip~g~~H~~~N~g~ 449 (478)
T PRK15460 421 IDGDIKLLGENESIYIPLGATHCLENPGK 449 (478)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCC
Confidence 34444555789999999999999999864
No 43
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=57.73 E-value=6 Score=38.87 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=24.3
Q ss_pred cceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccccC
Q 006870 487 EVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 532 (628)
Q Consensus 487 Q~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 532 (628)
.+.||...+ ++|.-+|=.|.=..+.-.-||.+++|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 456777333 47889999999999999999999999999965
No 44
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=56.90 E-value=8.9 Score=35.99 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=37.1
Q ss_pred cCCCcCcceeeCHHH-HHHHHHHhCccceEEEeecCceEEeCCCCcccccccC--Ccceee
Q 006870 481 THPLYGEVVYLNGDH-KRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLG 538 (628)
Q Consensus 481 ~hPIHDQ~fYLd~~h-k~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVA 538 (628)
.||-.++-+|+-.-. +-.+-++.|=+-+++.-..||+++||+|-+|+..|.. .+.-++
T Consensus 47 ~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~ 107 (146)
T smart00835 47 YHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVA 107 (146)
T ss_pred eCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEE
Confidence 455455667755431 1112222223557888899999999999999999974 344443
No 45
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=56.02 E-value=11 Score=38.67 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=44.9
Q ss_pred ceeeccccCCcCHHHHHHHHHHHhcCCCcchhhhhhhhhhhHHHHHH-HHHHHHHHHhccCCCCCcccCCCC
Q 006870 535 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAA-SSAIKEVQKLVLDPKLGAELGFED 605 (628)
Q Consensus 535 IKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~K~d~Levkkm~lya~-~~avke~~~l~~~p~~~~~~~~~~ 605 (628)
+.||+|+.+.+ ++++|++++... .+.++|+.-.+|+. ..+|++|++.+.+=+.=+++.+-|
T Consensus 6 livALD~~~~~---~A~~l~~~l~~~-------v~~iKVG~~L~~~~G~~~i~~lk~~~~~~~IflDlKl~D 67 (218)
T PRK13305 6 LQLALDHTSLE---AAQRDVTLLKDH-------VDIVEAGTILCLNEGLGAVKALREQCPDKIIVADWKVAD 67 (218)
T ss_pred EEEEeCCCCHH---HHHHHHHHcccc-------CCEEEECHHHHHHhCHHHHHHHHHhCCCCEEEEEeeccc
Confidence 78999999887 899999887633 47899999999887 778999998643222233444444
No 46
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=54.75 E-value=5.2 Score=38.80 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=38.3
Q ss_pred cCCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCc
Q 006870 481 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCP 525 (628)
Q Consensus 481 ~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCP 525 (628)
.-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|=.
T Consensus 18 ~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 18 TAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred cCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 348999999999999999999999999987 7799999988864
No 47
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=53.79 E-value=4.8 Score=45.08 Aligned_cols=29 Identities=34% Similarity=0.993 Sum_probs=26.3
Q ss_pred ccCCCCCcccccc-ccCCCCC-cchhhhhhH
Q 006870 2 CCNICRIPIIDYH-RHCGNCM-YDLCLSCCQ 30 (628)
Q Consensus 2 ~Cd~C~tsI~D~H-RsC~~Cs-ydLCL~CC~ 30 (628)
.||+|..-|-+.- -.|..|- |||||-|..
T Consensus 16 ~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 16 NCDYCSLDITGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCccHhHHhccceEEEeecCCCcchhHHHHh
Confidence 5999999999865 7999999 999999986
No 48
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=52.89 E-value=11 Score=39.33 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccccCC
Q 006870 482 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 533 (628)
Q Consensus 482 hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 533 (628)
|+-.++-+|+-.-- | +.-+..-+++=..||+++||||.||..+|...
T Consensus 77 ~~g~ee~iyVl~G~---l--~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGE---V--NVTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCE---E--EEEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 44445566665432 1 12244667777889999999999999999874
No 49
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=52.52 E-value=16 Score=37.14 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=50.0
Q ss_pred ceeeccccCCcCHHHHHHHHHHHhcCCCcchhhhhhhhhhhHHHHHH-HHHHHHHHHhccCCCCCcccCCCCCchh
Q 006870 535 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAA-SSAIKEVQKLVLDPKLGAELGFEDPNLT 609 (628)
Q Consensus 535 IKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~K~d~Levkkm~lya~-~~avke~~~l~~~p~~~~~~~~~~~~l~ 609 (628)
+.||+|+.+.| +.++|++++... .+.++|+.-.+++. -..|+++++++.+=..=+++.+.|..-|
T Consensus 6 l~vALD~~~~~---~a~~l~~~l~~~-------v~~~kvG~~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~ 71 (216)
T PRK13306 6 LQIALDNQDLE---SAIEDAKKVAEE-------VDIIEVGTILLLAEGMKAVRVLRALYPDKIIVADTKIADAGKI 71 (216)
T ss_pred EEEEecCCCHH---HHHHHHHHcccc-------CCEEEEChHHHHHhCHHHHHHHHHHCCCCEEEEEEeecCCcHH
Confidence 78999999988 888999887643 47799999999887 6778999987544345566777777633
No 50
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=52.38 E-value=11 Score=41.46 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=47.5
Q ss_pred cCCCcCcceeeCHH-HHHHHHHHhCccceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcCHHHHHHHHHHHhc
Q 006870 481 THPLYGEVVYLNGD-HKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRC 559 (628)
Q Consensus 481 ~hPIHDQ~fYLd~~-hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~ 559 (628)
.||--+..+|+-.- -+..+-..-| ..-++.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .|++=+..
T Consensus 262 ~H~~~~E~~yvl~G~~~~~v~d~~g-~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~l~~ 339 (367)
T TIGR03404 262 WHPNADEWQYFIQGQARMTVFAAGG-NARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQWLAL 339 (367)
T ss_pred eCcCCCeEEEEEEEEEEEEEEecCC-cEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHHHhh
Confidence 46665665555433 2222211111 355677789999999999999999998654333444333333222 26666777
Q ss_pred CCC
Q 006870 560 LPN 562 (628)
Q Consensus 560 Lp~ 562 (628)
+|.
T Consensus 340 ~p~ 342 (367)
T TIGR03404 340 TPP 342 (367)
T ss_pred CCH
Confidence 775
No 51
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=49.49 E-value=4.4 Score=43.96 Aligned_cols=29 Identities=34% Similarity=0.998 Sum_probs=25.8
Q ss_pred ccCCCCCccccc-cccCCCC-CcchhhhhhH
Q 006870 2 CCNICRIPIIDY-HRHCGNC-MYDLCLSCCQ 30 (628)
Q Consensus 2 ~Cd~C~tsI~D~-HRsC~~C-sydLCL~CC~ 30 (628)
.||.|..-|.|. |-+|-.| -||||+-|.-
T Consensus 7 hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 7 HCDVCFLDMTDLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred eehHHHHhhhcceeeeeecccccceehhhhh
Confidence 599999999986 5689999 9999999975
No 52
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=47.98 E-value=23 Score=39.32 Aligned_cols=38 Identities=16% Similarity=0.429 Sum_probs=29.2
Q ss_pred HHHHHHhh-cCCCEEEecccccCCCC-CCChh-hhhhhhhh
Q 006870 170 GNFRKHWV-KGEPVIVKQVCDSSSMS-IWDPK-DIWRGIRE 207 (628)
Q Consensus 170 ~hFQ~hW~-kGePVIVr~Vl~~~s~l-sW~P~-~mwr~~~e 207 (628)
.+|=+-|. +..|||+|+.+..=.++ .|.+. ++..+++.
T Consensus 34 l~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 34 LDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred HHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 56777775 88999999999876666 88877 77666543
No 53
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.69 E-value=12 Score=26.30 Aligned_cols=23 Identities=26% Similarity=0.772 Sum_probs=20.6
Q ss_pred ccCCCCCccccccccCCCCCcch
Q 006870 2 CCNICRIPIIDYHRHCGNCMYDL 24 (628)
Q Consensus 2 ~Cd~C~tsI~D~HRsC~~CsydL 24 (628)
.|..|..-|-.--+.||.|.|+.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48899999999999999999974
No 54
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=47.10 E-value=6.7 Score=43.06 Aligned_cols=17 Identities=53% Similarity=0.927 Sum_probs=13.4
Q ss_pred EeecCceEEeCCCCccc
Q 006870 511 EQHLGEAVFIPAGCPFQ 527 (628)
Q Consensus 511 ~Q~lGEAVFIPAGCPHQ 527 (628)
.=.+|||+|+|||-||-
T Consensus 253 ~L~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 253 ELQPGEAIFLPAGEPHA 269 (373)
T ss_dssp EE-TT-EEEEHTTHHEE
T ss_pred EecCCceEEecCCCccc
Confidence 34589999999999998
No 55
>PRK11171 hypothetical protein; Provisional
Probab=46.83 E-value=12 Score=39.25 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=23.5
Q ss_pred ccceEEEeecCceEEeCCCCcccccccC
Q 006870 505 VEPWSFEQHLGEAVFIPAGCPFQVRNLQ 532 (628)
Q Consensus 505 VepWtf~Q~lGEAVFIPAGCPHQVRNLk 532 (628)
+..=++.=..||.|+||+|.||+.+|..
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 3344667778999999999999999976
No 56
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=46.19 E-value=6.7 Score=34.75 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=32.7
Q ss_pred ccCCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccc
Q 006870 480 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRN 530 (628)
Q Consensus 480 v~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRN 530 (628)
+..||-. ||+++.+++|.+.+|.++ ||+||+=||-.+.|++
T Consensus 53 ~~s~i~k---fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~v~~ 93 (95)
T PF02938_consen 53 LKSPIAK---FLSEEELKALIERLGAKP-------GDLLLFVAGKKEIVNK 93 (95)
T ss_dssp EECTTCC---CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHHHHH
T ss_pred ccCcccc---cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHHHHh
Confidence 5566633 599999999999999975 9999999999888764
No 57
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=42.30 E-value=11 Score=39.79 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.3
Q ss_pred ccCCCCCccccccccCCCCCc
Q 006870 2 CCNICRIPIIDYHRHCGNCMY 22 (628)
Q Consensus 2 ~Cd~C~tsI~D~HRsC~~Csy 22 (628)
-|+||.+-+.-|..+||+|+.
T Consensus 84 ~C~~CGa~V~~~e~~Cp~C~S 104 (314)
T PF09567_consen 84 KCNNCGANVSRLEESCPNCGS 104 (314)
T ss_pred hhccccceeeehhhcCCCCCc
Confidence 499999999999999999974
No 58
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=42.20 E-value=10 Score=35.77 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=35.0
Q ss_pred CCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCC
Q 006870 482 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGC 524 (628)
Q Consensus 482 hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGC 524 (628)
-|.|...-.+...+=+.|+++|||..|.| +.||-|.|=||-
T Consensus 18 a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 18 APLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred CCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 36777777788888899999999999977 589999999985
No 59
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=40.99 E-value=21 Score=37.68 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=28.3
Q ss_pred HhCccceEEEeecCceEEeCCCCcccccccCCcc
Q 006870 502 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTV 535 (628)
Q Consensus 502 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 535 (628)
.|-|.+=++.-..||+||||+|.||+......|-
T Consensus 58 ~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 58 EYLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 3667788889999999999999999987666554
No 60
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=40.80 E-value=26 Score=35.08 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCcccCCCcCcceeeCHHHHHHHHHHhCccceEEEe-ecCceEEeCCCCccc
Q 006870 456 PKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQ-HLGEAVFIPAGCPFQ 527 (628)
Q Consensus 456 ~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q-~lGEAVFIPAGCPHQ 527 (628)
+||..|...|. |... .+-=|-+++-|.|.+.+. +-|-=.+ .-||-|+||||.-|-
T Consensus 80 eKvk~FfEEhl----h~de-----eiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHR 135 (179)
T KOG2107|consen 80 EKVKSFFEEHL----HEDE-----EIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHR 135 (179)
T ss_pred HHHHHHHHHhc----Cchh-----heEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceee
Confidence 57777776554 3322 344567888999887644 5675444 469999999999997
No 61
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=40.05 E-value=15 Score=33.59 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=18.6
Q ss_pred ccCCCCCcccc-------ccccCCCCCcc
Q 006870 2 CCNICRIPIID-------YHRHCGNCMYD 23 (628)
Q Consensus 2 ~Cd~C~tsI~D-------~HRsC~~Csyd 23 (628)
-|.+|....+. .|+.|++|.|-
T Consensus 23 ~CP~Cge~~v~v~~~k~~~h~~C~~CG~y 51 (99)
T PRK14892 23 ECPRCGKVSISVKIKKNIAIITCGNCGLY 51 (99)
T ss_pred ECCCCCCeEeeeecCCCcceEECCCCCCc
Confidence 49999977776 79999999983
No 62
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=39.47 E-value=23 Score=35.62 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=47.3
Q ss_pred Cccee-eCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcCHHHH
Q 006870 486 GEVVY-LNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEA 550 (628)
Q Consensus 486 DQ~fY-Ld~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec 550 (628)
|..|| |.-+++-++.+ +=+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.+
T Consensus 55 dE~FyqleG~~~l~v~d--~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d~ 118 (177)
T PRK13264 55 EEFFYQLEGDMYLKVQE--DGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELDG 118 (177)
T ss_pred ceEEEEECCeEEEEEEc--CCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCccc
Confidence 55666 44444334433 22346788899999999999999998899999999998888876654
No 63
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=39.30 E-value=14 Score=40.82 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=34.9
Q ss_pred EecCCChHHHHHHHHHHHHhhCCC--CCCCCC-cccCCCcCcceeeCHHHHHHHHHHhCccceEEEe-ecCceEEeCCCC
Q 006870 449 VFRRQDVPKLIEYLREHWTDFGRP--DGVTND-FVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQ-HLGEAVFIPAGC 524 (628)
Q Consensus 449 IFrreDv~KLreyL~kh~~Ef~~~--~~~~~~-~v~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q-~lGEAVFIPAGC 524 (628)
=||-+-.++|+..|+|-|-.+|.. +-+.++ +.+|= .| |=-...-||.---|=-| -.-||||||||.
T Consensus 243 eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidl-----ly-----KYivhr~yG~~fttpAlVVEkdaVfIPAGW 312 (473)
T KOG3905|consen 243 EYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDL-----LY-----KYIVHRSYGFPFTTPALVVEKDAVFIPAGW 312 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHH-----HH-----HHHHHHhcCcccCCcceEeecceeEeccCC
Confidence 366777778888887777666642 111111 01110 11 11112236653333233 246999999998
Q ss_pred c
Q 006870 525 P 525 (628)
Q Consensus 525 P 525 (628)
-
T Consensus 313 D 313 (473)
T KOG3905|consen 313 D 313 (473)
T ss_pred C
Confidence 5
No 64
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=39.16 E-value=14 Score=28.18 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=16.5
Q ss_pred CccCCCCCc--cccccc---cCCCCCcc
Q 006870 1 MCCNICRIP--IIDYHR---HCGNCMYD 23 (628)
Q Consensus 1 m~Cd~C~ts--I~D~HR---sC~~Csyd 23 (628)
|.|.+|..+ ++|+.+ .|++|.+.
T Consensus 1 m~Cp~Cg~~~~~~D~~~g~~vC~~CG~V 28 (43)
T PF08271_consen 1 MKCPNCGSKEIVFDPERGELVCPNCGLV 28 (43)
T ss_dssp ESBTTTSSSEEEEETTTTEEEETTT-BB
T ss_pred CCCcCCcCCceEEcCCCCeEECCCCCCE
Confidence 789999987 678765 57777653
No 65
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=38.85 E-value=23 Score=35.00 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=40.0
Q ss_pred cceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcCHHHH
Q 006870 506 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEA 550 (628)
Q Consensus 506 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec 550 (628)
+..++.=..||..+||+|.||..+--..||=+.+.=..|++...+
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~ 112 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDG 112 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcc
Confidence 356788899999999999999998899999999999999987764
No 66
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=38.71 E-value=17 Score=40.63 Aligned_cols=44 Identities=39% Similarity=0.603 Sum_probs=38.2
Q ss_pred ccccccccCCCCCCceecCC--ccccccccHHHH-HHHhhcCCCEEEe
Q 006870 141 SLCQYAHREDRDGNFLYCPS--SHDIRSEGIGNF-RKHWVKGEPVIVK 185 (628)
Q Consensus 141 ~~~~aa~re~s~dn~ly~P~--~~d~~~~~l~hF-Q~hW~kGePVIVr 185 (628)
+|-+||+|. +-.|-||||. +.-+...+|.+| ++|..+|.-|+|.
T Consensus 160 ~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 160 QLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 567899998 7889999996 678888999999 6899999999884
No 67
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=38.63 E-value=18 Score=28.60 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=25.5
Q ss_pred ccCCCCCccccccccCCCCC-cchhhhhhHHhh
Q 006870 2 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLR 33 (628)
Q Consensus 2 ~Cd~C~tsI~D~HRsC~~Cs-ydLCL~CC~elr 33 (628)
.|+.|..-+...+-+|.++. ||||-.|-.+=|
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~ 34 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGR 34 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhCcC
Confidence 48999888877666788876 999999988533
No 68
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=36.66 E-value=34 Score=37.73 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=35.6
Q ss_pred cceEEEeecCceEEeCCCCcccccccCCcceeec-----cccCCcCHHHHHHHHHHHhcCCCc
Q 006870 506 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGL-----DFLFPESVGEAVRLAEEIRCLPND 563 (628)
Q Consensus 506 epWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl-----DFVSPEnV~ec~rLteEfR~Lp~~ 563 (628)
+-+++.=..||.++||+|.+|-.+|...=..+.+ .|-|+..+ .++.=|+.+|.+
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~~~f~~~~~~----~~~~~l~~~p~~ 166 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDGTF----LVTDWLAHTPKD 166 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCCcccCCccee----eHHHHHHhCCHH
Confidence 4555567899999999999999999964333333 35556532 234445657653
No 69
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=36.54 E-value=41 Score=37.55 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=48.2
Q ss_pred ceeeccccCCcCHHHHHHHHHHHhcCCCcchhhhhhhhhhhHHHHHH-HHHHHHHHHhccCCCCCcccCCCCCchh
Q 006870 535 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYAA-SSAIKEVQKLVLDPKLGAELGFEDPNLT 609 (628)
Q Consensus 535 IKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~K~d~Levkkm~lya~-~~avke~~~l~~~p~~~~~~~~~~~~l~ 609 (628)
+.||+|+.++| +.+++++++... ....++|+.-.+++. -..|++|++...+=.+=+.+.+.|+.-|
T Consensus 175 L~vALD~~~~~---~A~~i~~~l~~~------~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~ 241 (391)
T PRK13307 175 LQVALDLPDLE---EVERVLSQLPKS------DHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNL 241 (391)
T ss_pred EEEecCCCCHH---HHHHHHHhcccc------cceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhH
Confidence 58999999988 778888776543 124789999988887 6678888886544335677777777643
No 70
>PF13216 DUF4024: Protein of unknown function (DUF4024)
Probab=35.86 E-value=19 Score=26.63 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.3
Q ss_pred CCCcceeeeeccccceeeeec
Q 006870 327 GNSVKNLHFNMPDMVYLLVHM 347 (628)
Q Consensus 327 gdSvTkLH~DmSDAVNIL~h~ 347 (628)
|.|||+||.=--.-||+|.-+
T Consensus 3 glsvt~lhlfrde~vnflfci 23 (35)
T PF13216_consen 3 GLSVTNLHLFRDEKVNFLFCI 23 (35)
T ss_pred ceEEEEEEEeecCCccEEEEe
Confidence 689999999888889999765
No 71
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=35.53 E-value=16 Score=43.83 Aligned_cols=34 Identities=41% Similarity=0.849 Sum_probs=0.0
Q ss_pred cCCCCC-ccccccccCCCCC-cchhhhhhHHhhhcc
Q 006870 3 CNICRI-PIIDYHRHCGNCM-YDLCLSCCQDLREAS 36 (628)
Q Consensus 3 Cd~C~t-sI~D~HRsC~~Cs-ydLCL~CC~elr~g~ 36 (628)
|+.||- +|+-|.-.|-+|. ||||++|.--=|.|.
T Consensus 606 CniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak 641 (966)
T KOG4286|consen 606 CNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAK 641 (966)
T ss_pred cchhhhCccceeeeeehhhcChhHHhhHhhhccccc
No 72
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=35.50 E-value=20 Score=30.33 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=12.9
Q ss_pred EEEeecCceEEeCCCCc
Q 006870 509 SFEQHLGEAVFIPAGCP 525 (628)
Q Consensus 509 tf~Q~lGEAVFIPAGCP 525 (628)
+..=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 35557999999999984
No 73
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=35.14 E-value=19 Score=25.61 Aligned_cols=27 Identities=33% Similarity=1.021 Sum_probs=23.6
Q ss_pred ccCCCCCccccc-cccCCCCCcchhhhh
Q 006870 2 CCNICRIPIIDY-HRHCGNCMYDLCLSC 28 (628)
Q Consensus 2 ~Cd~C~tsI~D~-HRsC~~CsydLCL~C 28 (628)
-|+.|...+-.+ -=+|..|.|.|-+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 389999999888 888999999998876
No 74
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=34.69 E-value=24 Score=25.20 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=13.1
Q ss_pred ChHHHHHHHHHHHHhhC
Q 006870 454 DVPKLIEYLREHWTDFG 470 (628)
Q Consensus 454 Dv~KLreyL~kh~~Ef~ 470 (628)
+-+||++||++...|.+
T Consensus 3 ~e~kLr~YLkr~t~eL~ 19 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAELR 19 (27)
T ss_dssp -HCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45799999999876653
No 75
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=34.50 E-value=50 Score=34.27 Aligned_cols=51 Identities=31% Similarity=0.507 Sum_probs=38.4
Q ss_pred ceeeccccCCcCHHHHHHHHHHHhcCCCcchhhhhhhhhhhHHHHH-HHHHHHHHHHhccCC
Q 006870 535 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVGKISLYA-ASSAIKEVQKLVLDP 595 (628)
Q Consensus 535 IKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~K~d~Levkkm~lya-~~~avke~~~l~~~p 595 (628)
+|||+|++| +.+.+.++++.-.. .|++||++..+.+ -..||+.|++++.|-
T Consensus 6 LQvALD~~~---l~~Ai~~a~~v~~~-------~diiEvGTpLik~eG~~aV~~lr~~~pd~ 57 (217)
T COG0269 6 LQVALDLLD---LEEAIEIAEEVADY-------VDIIEVGTPLIKAEGMRAVRALRELFPDK 57 (217)
T ss_pred eEeeecccC---HHHHHHHHHHhhhc-------ceEEEeCcHHHHHhhHHHHHHHHHHCCCC
Confidence 689999996 55666777665332 6899999998854 237999999987654
No 76
>PRK11171 hypothetical protein; Provisional
Probab=34.30 E-value=26 Score=36.67 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=27.6
Q ss_pred HhCccceEEEeecCceEEeCCCCcccccccCC
Q 006870 502 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 533 (628)
Q Consensus 502 EyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 533 (628)
++.+..-++.=..||++++|+++||+.+|.-+
T Consensus 217 ~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~ 248 (266)
T PRK11171 217 VYRLNNDWVEVEAGDFIWMRAYCPQACYAGGP 248 (266)
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEECCCC
Confidence 46677888888899999999999999999743
No 77
>PF12852 Cupin_6: Cupin
Probab=33.48 E-value=25 Score=34.09 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=27.7
Q ss_pred ccCCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccccC
Q 006870 480 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 532 (628)
Q Consensus 480 v~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 532 (628)
..|=+-..++||...- +-+| +.=..||.||+|.|.+|...--.
T Consensus 37 ~fh~V~~G~~~l~~~~--------~~~~--~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPG--------GGEP--IRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEEEEECCeEEEEEcC--------CCCe--EEecCCCEEEEcCCCCeEeCCCC
Confidence 4555666677776211 1123 44467999999999999985433
No 78
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=30.51 E-value=36 Score=29.53 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=27.9
Q ss_pred hCccceEEEeecCceEEeCCCCcccccccC--CcceeeccccCCcCHHH
Q 006870 503 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLGLDFLFPESVGE 549 (628)
Q Consensus 503 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~e 549 (628)
+.|..=++.=..||++|||+|.+|...--. .+....+.| +|+-+.+
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~~ 83 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLEE 83 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGGG
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHHH
Confidence 445566677789999999999999988777 566666665 5544433
No 79
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=29.36 E-value=41 Score=34.28 Aligned_cols=31 Identities=6% Similarity=0.119 Sum_probs=24.5
Q ss_pred hCccceEEEeecCceEEeCCCCcccccccCC
Q 006870 503 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 533 (628)
Q Consensus 503 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 533 (628)
+.|..=++.=..||+||||+|.+|+++.-.+
T Consensus 57 ~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 57 LQLDEHEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred EEECCEEEEecCCeEEEeCCCCccccccCCC
Confidence 5555666777799999999999999875444
No 80
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=29.10 E-value=31 Score=32.36 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=38.6
Q ss_pred cCCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcc
Q 006870 481 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPF 526 (628)
Q Consensus 481 ~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPH 526 (628)
.-|+|...-++...+=+.|.++||++.+.| +-||-|-|=+|-=.
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~K 56 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDFK 56 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCCC
Confidence 348999999999999999999999999966 78999999998643
No 81
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=27.30 E-value=36 Score=35.61 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=36.0
Q ss_pred cCCCcCcceeeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCccccccc
Q 006870 481 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNL 531 (628)
Q Consensus 481 ~hPIHDQ~fYLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNL 531 (628)
.|-=|||.+|+-+-. =++-|.+=++.=..||.+|||.|.+|.-.+-
T Consensus 171 wtl~~dEi~YVLEGe-----~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp 216 (233)
T PRK15457 171 WTLNYDEIDMVLEGE-----LHVRHEGETMIAKAGDVMFIPKGSSIEFGTP 216 (233)
T ss_pred eeccceEEEEEEEeE-----EEEEECCEEEEeCCCcEEEECCCCeEEecCC
Confidence 556678888876553 1366788999999999999999999876443
No 82
>PRK13503 transcriptional activator RhaS; Provisional
Probab=27.20 E-value=34 Score=34.67 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=23.4
Q ss_pred hCccceEEEeecCceEEeCCCCcccccccCC
Q 006870 503 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 533 (628)
Q Consensus 503 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLkS 533 (628)
+.|..=++.=..||++|||+|.+|..++...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 3344445555789999999999999877665
No 83
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=25.37 E-value=53 Score=32.29 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=16.0
Q ss_pred ccceEEEeecCceEEeCCCCc
Q 006870 505 VEPWSFEQHLGEAVFIPAGCP 525 (628)
Q Consensus 505 VepWtf~Q~lGEAVFIPAGCP 525 (628)
+++=++.=+.||+||||.|.-
T Consensus 110 ~~G~~~~A~~GDvi~iPkGs~ 130 (152)
T PF06249_consen 110 IDGQTVTAKPGDVIFIPKGST 130 (152)
T ss_dssp ETTEEEEEETT-EEEE-TT-E
T ss_pred ECCEEEEEcCCcEEEECCCCE
Confidence 568899999999999999963
No 84
>PRK13501 transcriptional activator RhaR; Provisional
Probab=25.03 E-value=41 Score=34.73 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=24.0
Q ss_pred hCccceEEEeecCceEEeCCCCccccccc
Q 006870 503 FGVEPWSFEQHLGEAVFIPAGCPFQVRNL 531 (628)
Q Consensus 503 yGVepWtf~Q~lGEAVFIPAGCPHQVRNL 531 (628)
+-|++-++.=..||.||||+|.+|+++.-
T Consensus 51 ~~i~~~~~~l~~g~~~~I~p~~~H~~~~~ 79 (290)
T PRK13501 51 HVLNDHPYRITCGDVFYIQAADHHSYESV 79 (290)
T ss_pred EEECCeeeeecCCeEEEEcCCCccccccc
Confidence 55667777778999999999999997743
No 85
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=23.34 E-value=33 Score=37.79 Aligned_cols=30 Identities=37% Similarity=1.032 Sum_probs=23.6
Q ss_pred CccCCCCCccccccc-cCCCCC-cchhhhhhH
Q 006870 1 MCCNICRIPIIDYHR-HCGNCM-YDLCLSCCQ 30 (628)
Q Consensus 1 m~Cd~C~tsI~D~HR-sC~~Cs-ydLCL~CC~ 30 (628)
+-||.|.---|-|.| .|-.|+ ||||-+|--
T Consensus 9 v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCye 40 (381)
T KOG1280|consen 9 VSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYE 40 (381)
T ss_pred ceeccccccceeeeeeEeeeecchhHHHHHhh
Confidence 359999777676666 588886 999999965
No 86
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=21.48 E-value=91 Score=28.16 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=44.1
Q ss_pred eeCHHHHHHHHHHhCccceEEEeecCceEEeCCCCcccccccCCcceeeccccCCcCHHHHHHHHHHHhcCCCcchhhhh
Q 006870 490 YLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQ 569 (628)
Q Consensus 490 YLd~~hk~kLkeEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ec~rLteEfR~Lp~~H~~K~d 569 (628)
+++.+-+.+|..|||+. .+|.+.. |.||-||. .+-..||+=|..-|++|-+|--
T Consensus 2 ~~~~~~k~~l~~eyg~~-------~~dtgs~----evq~a~Lt---------------~ri~~L~~Hlk~hkKD~~srRG 55 (89)
T COG0184 2 SLTSEIKQELRDEYGIP-------EVDTGSG----EVQLALLT---------------ERINNLTEHLKEHKKDHHSRRG 55 (89)
T ss_pred CchHHHHHHHHHHhCCC-------CCCCCCc----HHHHHHHH---------------HHHHHHHHHHHHCCcchhHHHH
Confidence 67889999999999963 4554433 77877773 5677899999999999988876
Q ss_pred hhh
Q 006870 570 VLE 572 (628)
Q Consensus 570 ~Le 572 (628)
.+.
T Consensus 56 L~~ 58 (89)
T COG0184 56 LLL 58 (89)
T ss_pred HHH
Confidence 554
No 87
>PRK13502 transcriptional activator RhaR; Provisional
Probab=21.31 E-value=99 Score=31.59 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=24.0
Q ss_pred hCccceEEEeecCceEEeCCCCcccccccC
Q 006870 503 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 532 (628)
Q Consensus 503 yGVepWtf~Q~lGEAVFIPAGCPHQVRNLk 532 (628)
+-|+.=++.-..||++|||+|.+|......
T Consensus 51 ~~i~~~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 51 HVLNERPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred EEECCEEEeecCCcEEEECCCCcccccccC
Confidence 446677788889999999999999876433
No 88
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=20.06 E-value=51 Score=39.15 Aligned_cols=35 Identities=23% Similarity=0.617 Sum_probs=23.1
Q ss_pred ccCCCCCccccccccCCCCCcch----hhhhhHHhhhcc
Q 006870 2 CCNICRIPIIDYHRHCGNCMYDL----CLSCCQDLREAS 36 (628)
Q Consensus 2 ~Cd~C~tsI~D~HRsC~~CsydL----CL~CC~elr~g~ 36 (628)
.|-.|.+.+-+=+|.|++|...| |-.|=.++..|.
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~ 41 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPVDE 41 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCccc
Confidence 37777777777777777777664 666655555444
Done!