BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006872
(628 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/603 (67%), Positives = 468/603 (77%), Gaps = 2/603 (0%)
Query: 25 YIKYKDPKQPLGARIRDLMSRMTLAEKIGQMTQIERAVATPDVMKQFFIGSVLSGGGSVP 84
Y+ YKD +P+ R+ DL+ RMTLAEKIGQMTQIER VATPDV++ FIGS+LSGGGSVP
Sbjct: 2 YVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVP 61
Query: 85 APKATAETWVNMVNGLQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDP 144
ATA+ W +MV+G QK +STRLGIPMIYGIDAVHG NNVY ATIFPHNVGLG TRDP
Sbjct: 62 RKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDP 121
Query: 145 ALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQAMTEIIPGLQ 204
LVK+IG+ATALEVRATGI Y FAPCIAVCRDPRWGRCYESYSED +IVQ+MTE+IPGLQ
Sbjct: 122 YLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQ 181
Query: 205 GDLPANSKKGVPFXXXXXXXXXXXXHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNS 264
GD+P + G+PF H+VGDGGT GINENNT+IN GL++IHMPAY N+
Sbjct: 182 GDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNA 241
Query: 265 ISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYS 324
+ KGV+TVM+SYSSWNG KMHAN +LVTG+LK+ LKF+GFVISDWEGIDRIT P ++YS
Sbjct: 242 MDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYS 301
Query: 325 YSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKFVMGLFDS 384
YSV+A + AG+DM+MVPN Y++FI LT V +IPMSRIDDAV RILRVKF MGLF++
Sbjct: 302 YSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFEN 361
Query: 385 PLADTSLVNELGSQEHRELAREAVRKSLVLLKNGE-AADXXXXXXXXXASKILVAGSHAD 443
P AD ++ +LG QEHR+LAREA RKSLVLLKNG+ + D A KILVAGSHAD
Sbjct: 362 PYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHAD 421
Query: 444 NLGYQCGGWTITWQGLGGNDLTAGSTILHAVSNTVDPTTQVVFNENPDANFVKSNKFSYA 503
NLGYQCGGWTI WQG G T G+TIL AV VDP+T VVF ENPDA FVKS FSYA
Sbjct: 422 NLGYQCGGWTIEWQGDTGR-TTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYA 480
Query: 504 IVVVGEQPYAETYGDSLNLTISEPGLSTITNXXXXXXXXXXXXXXXXXXIQPYLAQIDAL 563
IV VGE PY ET GD+LNLTI EPGLST+ +QP LA DAL
Sbjct: 481 IVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDAL 540
Query: 564 VAAWLPGTEGQGVADVLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGLTTK 623
VAAWLPG+EGQGV D LFGD+GFTG+L RTWFK+VDQLPMNVGD HYDPLF G+GLTT
Sbjct: 541 VAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTN 600
Query: 624 PTK 626
TK
Sbjct: 601 ATK 603
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/602 (67%), Positives = 467/602 (77%), Gaps = 2/602 (0%)
Query: 25 YIKYKDPKQPLGARIRDLMSRMTLAEKIGQMTQIERAVATPDVMKQFFIGSVLSGGGSVP 84
Y+ YKD +P+ R+ DL+ RMTLAEKIGQMTQIER VATPDV++ FIGS+LSGGGSVP
Sbjct: 2 YVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVP 61
Query: 85 APKATAETWVNMVNGLQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDP 144
ATA+ W +MV+G QK +STRLGIPMIYGIDAVHG NNVY ATIFPHNVGLG TRDP
Sbjct: 62 RKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDP 121
Query: 145 ALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQAMTEIIPGLQ 204
LVK+IG+ATALEVRATGI Y FAPCIAVCRDPRWGRCYESYSED +IVQ+MTE+IPGLQ
Sbjct: 122 YLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQ 181
Query: 205 GDLPANSKKGVPFXXXXXXXXXXXXHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNS 264
GD+P + G+PF H+VGDGGT GINENNT+IN GL++IHMPAY N+
Sbjct: 182 GDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNA 241
Query: 265 ISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYS 324
+ KGV+TVM+SYSSWNG KMHAN +LVTG+LK+ LKF+GFVISDWEGIDRIT P ++YS
Sbjct: 242 MDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYS 301
Query: 325 YSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKFVMGLFDS 384
YSV+A + AG+DM+MVPN Y++FI LT V +IPMSRIDDAV RILRVKF MGLF++
Sbjct: 302 YSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFEN 361
Query: 385 PLADTSLVNELGSQEHRELAREAVRKSLVLLKNGE-AADXXXXXXXXXASKILVAGSHAD 443
P AD ++ +LG QEHR+LAREA RKSLVLLKNG+ + D A KILVAGSHAD
Sbjct: 362 PYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHAD 421
Query: 444 NLGYQCGGWTITWQGLGGNDLTAGSTILHAVSNTVDPTTQVVFNENPDANFVKSNKFSYA 503
NLGYQCGGWTI WQG G T G+TIL AV VDP+T VVF ENPDA FVKS FSYA
Sbjct: 422 NLGYQCGGWTIEWQGDTGR-TTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYA 480
Query: 504 IVVVGEQPYAETYGDSLNLTISEPGLSTITNXXXXXXXXXXXXXXXXXXIQPYLAQIDAL 563
IV VGE PY ET GD+LNLTI EPGLST+ +QP LA DAL
Sbjct: 481 IVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDAL 540
Query: 564 VAAWLPGTEGQGVADVLFGDYGFTGKLARTWFKTVDQLPMNVGDPHYDPLFPFGFGLTTK 623
VAAWLPG+EGQGV D LFGD+GFTG+L RTWFK+VDQLPMNVGD HYDPLF G+GLTT
Sbjct: 541 VAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTTN 600
Query: 624 PT 625
T
Sbjct: 601 AT 602
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 432 bits (1112), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/621 (39%), Positives = 362/621 (58%), Gaps = 44/621 (7%)
Query: 25 YIKYKDPKQP-LGARIRDLMSRMTLAEKIGQMTQIERAVATPDVMKQFFIGSVLSGGGSV 83
Y+ K + P + A+I L+++MT+ +K+ QM Q E T + M+++ GS L+GG +
Sbjct: 11 YVNTKLKRDPAVEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGFGSYLNGGNTA 70
Query: 84 P--APKATAETWVNMVNGLQKGALSTRL---GIPMIYGIDAVHGHNNVYKATIFPHNVGL 138
P +A TW+ + + A+ + L IP ++G DA+HGH+NVY AT+FPHN+GL
Sbjct: 71 PYGNKRADQATWLKYADEMYLAAMDSTLDGIAIPTVWGTDAMHGHSNVYGATLFPHNIGL 130
Query: 139 GVTRDPALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQAMT- 197
G RD L+K+IG ATA EV ATGI + FAP +AV RD RWGR YESYSED +V+
Sbjct: 131 GAARDTDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAG 190
Query: 198 EIIPGLQGDLPANSKKGVPFXXXXXXXXXXXXHYVGDGGTTKGINENNTVINLNGLLSIH 257
E++ G+QGD+ A+ KG H+VGDGGT +G++ NT+I+ GL IH
Sbjct: 191 EMVTGIQGDVGADFLKG-------SNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIH 243
Query: 258 MPAYYNSISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITA 317
Y+++I++GV +VM S++SWNGK++H + L+T LKN+L F GFV+SDW +
Sbjct: 244 SAGYFSAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEG 303
Query: 318 PPHANYSYSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKF 377
+ QA ++AG+D++MVP +++ F + QVK +I SRI+DAV+R LR K
Sbjct: 304 ---CDLEQCAQA-INAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKI 359
Query: 378 VMGLFD----SPLADTSLVNELGSQEHRELAREAVRKSLVLLKNGEAADXXXXXXXXXAS 433
G+F S ++ LG+ EHR LAREAVRKSLVLLKN E+ +S
Sbjct: 360 RWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNES-----ILPIKASS 414
Query: 434 KILVAGSHADNLGYQCGGWTITWQGLG--GNDLTAGSTILHAVSNTVDPT-TQVVFNENP 490
+ILVAG A+ + Q GGW+++WQG +D ++I + + V ++ +E+
Sbjct: 415 RILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESG 474
Query: 491 DANFVKSNKFSYAIVVVGEQPYAETYGDSLNLTI---SEPGLSTITNXXXXXX-XXXXXX 546
+ ++K AIVV+GE+PYAE +GD L ++ L+ +
Sbjct: 475 E----YTSKPDVAIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNIPVVTVFL 530
Query: 547 XXXXXXIQPYLAQIDALVAAWLPGTEGQGVADVLFGD------YGFTGKLARTWFKTVDQ 600
+ L DA VAAWLPG+EG+GVADVL + + FTGKL+ +W K DQ
Sbjct: 531 SGRPLWVNKELNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQ 590
Query: 601 LPMNVGDPHYDPLFPFGFGLT 621
+N+ D YDPLF +G+GLT
Sbjct: 591 FTLNLNDADYDPLFAYGYGLT 611
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/621 (39%), Positives = 362/621 (58%), Gaps = 44/621 (7%)
Query: 25 YIKYKDPKQP-LGARIRDLMSRMTLAEKIGQMTQIERAVATPDVMKQFFIGSVLSGGGSV 83
Y+ K + P + A+I L+++MT+ +K+ QM Q E T + M+++ GS L+GG +
Sbjct: 11 YVNTKLKRDPAVEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGFGSYLNGGNTA 70
Query: 84 P--APKATAETWVNMVNGLQKGALSTRL---GIPMIYGIDAVHGHNNVYKATIFPHNVGL 138
P +A TW+ + + A+ + L IP ++G DA+HGH+NVY AT+FPHN+GL
Sbjct: 71 PYGNKRADQATWLKYADEMYLAAMDSTLDGIAIPTVWGTDAMHGHSNVYGATLFPHNIGL 130
Query: 139 GVTRDPALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQAMT- 197
G RD L+K+IG ATA EV ATGI + FAP +AV RD RWGR YESYSED +V+
Sbjct: 131 GAARDTDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAG 190
Query: 198 EIIPGLQGDLPANSKKGVPFXXXXXXXXXXXXHYVGDGGTTKGINENNTVINLNGLLSIH 257
E++ G+QGD+ A+ KG H+VGDGGT +G++ NT+I+ GL IH
Sbjct: 191 EMVTGIQGDVGADFLKG-------SNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIH 243
Query: 258 MPAYYNSISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITA 317
Y+++I++GV +VM S++SWNGK++H + L+T LKN+L F GFV+SDW +
Sbjct: 244 SAGYFSAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFVEG 303
Query: 318 PPHANYSYSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKF 377
+ QA ++AG+D++MVP +++ F + QVK +I SRI+DAV+R LR K
Sbjct: 304 ---CDLEQCAQA-INAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKI 359
Query: 378 VMGLFD----SPLADTSLVNELGSQEHRELAREAVRKSLVLLKNGEAADXXXXXXXXXAS 433
G+F S ++ LG+ EHR LAREAVRKSLVLLKN E+ +S
Sbjct: 360 RWGVFTKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNES-----ILPIKASS 414
Query: 434 KILVAGSHADNLGYQCGGWTITWQGLG--GNDLTAGSTILHAVSNTVDPT-TQVVFNENP 490
+ILVAG A+ + Q GGW+++WQG +D ++I + + V ++ +E+
Sbjct: 415 RILVAGKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESG 474
Query: 491 DANFVKSNKFSYAIVVVGEQPYAETYGDSLNLTI---SEPGLSTITNXXXXXX-XXXXXX 546
+ ++K AIVV+GE+PYAE +GD L ++ L+ +
Sbjct: 475 E----YTSKPDVAIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNIPVVTVFL 530
Query: 547 XXXXXXIQPYLAQIDALVAAWLPGTEGQGVADVLFGD------YGFTGKLARTWFKTVDQ 600
+ L DA VAAWLPG+EG+GVADVL + + FTGKL+ +W K DQ
Sbjct: 531 SGRPLWVNKELNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQ 590
Query: 601 LPMNVGDPHYDPLFPFGFGLT 621
+N+ D YDPLF +G+GLT
Sbjct: 591 FTLNLNDADYDPLFAYGYGLT 611
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 171/391 (43%), Gaps = 57/391 (14%)
Query: 38 RIRDLMSRMTLAEKIGQMTQIERAVATPDVMKQFFIGSVLSGGGSVPAPKATAETWVNMV 97
++ +++S++TL EK+ + V P + + G + P P+ +V
Sbjct: 3 KVNEILSQLTLEEKVKLVV----GVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAFV--- 55
Query: 98 NGLQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDPALVKKIGDATALE 157
L G R+ N Y T FP + L T + L++++G A E
Sbjct: 56 --LADGPAGLRIN-------PTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEE 106
Query: 158 VRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQAMTEIIPGLQGDLPANSKKGVPF 217
VR G+ + AP + + R+P GR +E YSED P L G++ ++ KGV
Sbjct: 107 VREYGVDVLLAPAMNIHRNPLCGRNFEYYSED-----------PVLSGEMASSFVKGV-- 153
Query: 218 XXXXXXXXXXXXHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNSISKGVA-TVMVSY 276
H+V + T + +T+++ L I++ + ++ K +VM +Y
Sbjct: 154 --QSQGVGACIKHFVANNQETNRMV-VDTIVSERALREIYLRGFEIAVKKSKPWSVMSAY 210
Query: 277 SSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGID 336
+ NGK N L+ L+ + F GFV+SDW D + AG D
Sbjct: 211 NKLNGKYCSQNEWLLKKVLREEWGFEGFVMSDWYAGDNPVEQ------------LKAGND 258
Query: 337 MVM------VPNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKFVMGLFDSP-LADT 389
++M V ++ I+++ + +K+ + +D+ V+ IL+V L ++P +
Sbjct: 259 LIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKV-----LVNAPSFKNY 313
Query: 390 SLVNELGSQEHRELAREAVRKSLVLLKNGEA 420
N+ ++H ++A EA + +VLL+N EA
Sbjct: 314 RYSNKPDLEKHAKVAYEAGAEGVVLLRNEEA 344
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 26/88 (29%)
Query: 560 IDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTWFKTVDQLP---------------- 602
+D ++ W G E G+ VADVL G +GKL T+ + +P
Sbjct: 512 VDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDYSDVPSWTFPGEPKDNPQKVV 571
Query: 603 ----MNVGDPHYD-----PLFPFGFGLT 621
+ VG +YD P + FG+GL+
Sbjct: 572 YEEDIYVGYRYYDTFGVEPAYEFGYGLS 599
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 170/391 (43%), Gaps = 57/391 (14%)
Query: 38 RIRDLMSRMTLAEKIGQMTQIERAVATPDVMKQFFIGSVLSGGGSVPAPKATAETWVNMV 97
++ +++S++TL EK+ + V P + + G + P P+ +V
Sbjct: 3 KVNEILSQLTLEEKVKLVV----GVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAFV--- 55
Query: 98 NGLQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDPALVKKIGDATALE 157
L G R+ N Y T FP + L T + L++++G A E
Sbjct: 56 --LADGPAGLRIN-------PTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEE 106
Query: 158 VRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQAMTEIIPGLQGDLPANSKKGVPF 217
VR G+ + AP + + R+P GR +E YSED P L G++ ++ KGV
Sbjct: 107 VREYGVDVLLAPAMNIHRNPLCGRNFEYYSED-----------PVLSGEMASSFVKGV-- 153
Query: 218 XXXXXXXXXXXXHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNSISKGVA-TVMVSY 276
H+V + T + +T+++ L I++ + ++ K +VM +Y
Sbjct: 154 --QSQGVGACIKHFVANNQETNRMV-VDTIVSERALREIYLRGFEIAVKKSKPWSVMSAY 210
Query: 277 SSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGID 336
+ NGK N L+ L+ + F GFV+S W D + AG D
Sbjct: 211 NKLNGKYCSQNEWLLKKVLREEWGFEGFVMSAWYAGDNPVEQ------------LKAGND 258
Query: 337 MVM------VPNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKFVMGLFDSP-LADT 389
++M V ++ I+++ + +K+ + +D+ V+ IL+V L ++P +
Sbjct: 259 LIMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKV-----LVNAPSFKNY 313
Query: 390 SLVNELGSQEHRELAREAVRKSLVLLKNGEA 420
N+ ++H ++A EA + +VLL+N EA
Sbjct: 314 RYSNKPDLEKHAKVAYEAGAEGVVLLRNEEA 344
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 26/88 (29%)
Query: 560 IDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTWFKTVDQLP---------------- 602
+D ++ W G E G+ VADVL G +GKL T+ + +P
Sbjct: 512 VDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDYSDVPSWTFPGEPKDNPQKVV 571
Query: 603 ----MNVGDPHYD-----PLFPFGFGLT 621
+ VG +YD P + FG+GL+
Sbjct: 572 YEEDIYVGYRYYDTFGVEPAYEFGYGLS 599
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 131/323 (40%), Gaps = 45/323 (13%)
Query: 108 RLGIPMIYGIDAVHGHNNVYK-ATIFPHNVGLGVTRDPALVKKIGDATALEVRATGIPYV 166
RLGIP + D +G V + AT P V L T D + G + RA V
Sbjct: 89 RLGIPELRAADGPNGIRLVGQTATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMV 148
Query: 167 FAPCIAVCRDPRWGRCYESYSEDHKIVQAMTEI--IPGLQGDLPANSKKGVPFXXXXXXX 224
P + R P GR YE++SED +V + T + I G+QG + K
Sbjct: 149 LGPMMNNIRVPHGGRNYETFSED-PLVSSRTAVAQIKGIQGAGLMTTAK----------- 196
Query: 225 XXXXXHYVGDGGTTKGINENNTVINLNG------LLSIHMPAYYNSISKGVATVMVSYSS 278
H+ + N+ N ++N L I PA+ S G A+ M +Y+
Sbjct: 197 -----HFAAN-------NQENNRFSVNANVDEQTLREIEFPAFEASSKAGAASFMCAYNG 244
Query: 279 WNGKKMHANHELVTGFLKNKLKFRGFVISDW---EGIDRITAPPHANYSYSVQAGVSAGI 335
NGK N EL+ L+ + F+G+V+SDW G D IT + V G
Sbjct: 245 LNGKPSCGNDELLNNVLRTQWGFQGWVMSDWLATPGTDAITKGLDQEMGVELPGDVPKG- 303
Query: 336 DMVMVPNNYKEFIDD-LTDQVKKNIIPMSRIDDAVKRILRVKFVMGLFDSPLADTSLVNE 394
P+ +F + L V +P + + + +RI+ GL + A ++
Sbjct: 304 ----EPSPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRPERDK 359
Query: 395 LGSQEHRELAREAVRKSLVLLKN 417
G+Q ++R+ VLL+N
Sbjct: 360 AGAQ---AVSRKVAENGAVLLRN 379
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 28/96 (29%)
Query: 553 IQPYLAQIDALVAAWLPGTEG-QGVADVLFGDYGFTGKLARTWFKTVDQLPMNVGDP--- 608
+ P+L++ A++ W PG G + A +L+GD +GKL ++ F + GDP
Sbjct: 617 LMPWLSKTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQS-FPAAENQHAVAGDPTSY 675
Query: 609 -----------------------HYDPLFPFGFGLT 621
+ PLFPFG GL+
Sbjct: 676 PGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLS 711
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 52/303 (17%)
Query: 129 ATIFPHNVGLGVTRDPALVKKIGDATALEVRATGIPYVFAPCIA-VCRDPRWGRCYESYS 187
+T F V T D L+++ G EV+A+GI + P + + P+ GR +E +
Sbjct: 73 STAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHVILGPVAGPLGKTPQGGRNWEGFG 132
Query: 188 EDHKIVQ-AMTEIIPGLQG-DLPANSKKGVPFXXXXXXXXXXXXHYVGDGGTTKGINE-- 243
D + AM + I G+Q + A +K HY+ +NE
Sbjct: 133 VDPYLTGIAMGQTINGIQSVGVQATAK-----------------HYI--------LNEQE 167
Query: 244 -NNTVINLN----GLLSIHMPAYYNSISKGVATVMVSYSSWNGKKMHANHELVTGFLKNK 298
N I+ N L ++ + +++ VA+VM SY+ N + + LK++
Sbjct: 168 LNRETISSNPDDRTLHELYTWPFADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQ 227
Query: 299 LKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVM----VPNNYKEFIDDLTDQ 354
L F G+V++DW N ++ ++G+DM M N + + LT+
Sbjct: 228 LGFPGYVMTDW------------NAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNA 275
Query: 355 VKKNIIPMSRIDDAVKRILRVKFVMGLFDSPLADTSLVNELGSQEHRELAREAVRKSLVL 414
V N +P SR+DD V RIL ++ G + ++ + H+ R R +VL
Sbjct: 276 VNSNQVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNV-QGNHKTNVRAIARDGIVL 334
Query: 415 LKN 417
LKN
Sbjct: 335 LKN 337
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
Query: 557 LAQIDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTWFKTVDQLPMNV---------- 605
L Q+ A+V A LP E G + DVL+GD +GKL T K+ + +
Sbjct: 495 LPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSFSE 554
Query: 606 ---------GDPHYDPLFPFGFGLT 621
D + P + FG+GL+
Sbjct: 555 GLFIDYKHFDDANITPRYEFGYGLS 579
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 129/303 (42%), Gaps = 52/303 (17%)
Query: 129 ATIFPHNVGLGVTRDPALVKKIGDATALEVRATGIPYVFAPCIA-VCRDPRWGRCYESYS 187
+T F V T D L+++ G EV+A+GI + P + + P+ GR +E +
Sbjct: 72 STAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHVILGPVAGPLGKTPQGGRNWEGFG 131
Query: 188 EDHKIVQ-AMTEIIPGLQG-DLPANSKKGVPFXXXXXXXXXXXXHYVGDGGTTKGINE-- 243
D + AM + I G+Q + A +K HY+ +NE
Sbjct: 132 VDPYLTGIAMGQTINGIQSVGVQATAK-----------------HYI--------LNEQE 166
Query: 244 -NNTVINLN----GLLSIHMPAYYNSISKGVATVMVSYSSWNGKKMHANHELVTGFLKNK 298
N I+ N L ++ + +++ VA+VM SY+ N + + LK++
Sbjct: 167 LNRETISSNPDDRTLHELYTWPFADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQ 226
Query: 299 LKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVM----VPNNYKEFIDDLTDQ 354
L F G+V++DW N ++ ++G+DM M N + + LT+
Sbjct: 227 LGFPGYVMTDW------------NAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNA 274
Query: 355 VKKNIIPMSRIDDAVKRILRVKFVMGLFDSPLADTSLVNELGSQEHRELAREAVRKSLVL 414
V N +P SR+DD V RIL ++ G + ++ + H+ R R +VL
Sbjct: 275 VNSNQVPTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNV-QGNHKTNVRAIARDGIVL 333
Query: 415 LKN 417
LKN
Sbjct: 334 LKN 336
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
Query: 557 LAQIDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTWFKTVDQLPMNV---------- 605
L Q+ A+V A LP E G + DVL+GD +GKL T K+ + +
Sbjct: 494 LPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSFSE 553
Query: 606 ---------GDPHYDPLFPFGFGLT 621
D + P + FG+GL+
Sbjct: 554 GLFIDYKHFDDANITPRYEFGYGLS 578
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 143/325 (44%), Gaps = 48/325 (14%)
Query: 108 RLGIPMIYGIDAVHGHNNV-----YKATIFPHNVGLGVTRDPALVKKIGDATALEVRATG 162
RLGIP + D +G + FP+ GL T D L++ G A E A
Sbjct: 35 RLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLMAKESIAKN 94
Query: 163 IPYVFAPCIAVCRDPRWGRCYESYSEDHKIV-QAMTEIIPGLQGDLPANSKKGVPFXXXX 221
+ P + R P GR +ES+SED + A + ++ G+QG+ A + K
Sbjct: 95 AAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGIAATVK-------- 146
Query: 222 XXXXXXXXHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNSISKGV-ATVMVSYSSWN 280
H+V + + + +N++++ L I++ + ++ +M +Y+ N
Sbjct: 147 --------HFVCNDLEDQRFS-SNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVN 197
Query: 281 GKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMV 340
G+ + +L+ L+++ K+ G ++SDW G +Y+ A + G+D+
Sbjct: 198 GEHCSQSKKLLIDILRDEWKWDGMLMSDWFG------------TYTTAAAIKNGLDIEFP 245
Query: 341 -PNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILR-VKFVM------GLFDSPLADTSLV 392
P ++ + I +DD V+++L+ +KFV+ G+ ++ TS
Sbjct: 246 GPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTS-- 303
Query: 393 NELGSQEHRELAREAVRKSLVLLKN 417
++E +L R+ S+VLLKN
Sbjct: 304 --NNTKETSDLLRKIAADSIVLLKN 326
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 555 PYLAQIDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTW-FKTVDQ------------ 600
P+L +ALV AW G E G +ADVL+GD GKL+ +W FK D
Sbjct: 630 PWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGR 689
Query: 601 ----LPMNVGDPHYDPL-----FPFGFGLT 621
+ VG +Y+ L FPFG+GL+
Sbjct: 690 VIYGEDIFVGYRYYEKLQRKVAFPFGYGLS 719
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 101/466 (21%), Positives = 193/466 (41%), Gaps = 93/466 (19%)
Query: 11 FLLLCFLAA-VTEATYIKYK-DPKQPLGARIRDLMSRMTLAEKIGQM------------- 55
L CF A TEA+ K D Q +++RM+L EK+GQM
Sbjct: 13 LFLSCFFGARQTEASASKRAIDANQ--------IVNRMSLDEKLGQMLMPDFRNWQKEGE 64
Query: 56 ------TQIERAVATPDVMKQFFIGSVLSGGGSVPAPKATAETWVNMVNGLQKGALSTRL 109
T++ VA+ ++K++ G ++ +V K T V + + QK +
Sbjct: 65 SSPQALTKMNDEVAS--LVKKYQFGGIILFAENVKTTKQT----VQLTDDYQKASPK--- 115
Query: 110 GIPMIYGIDAVHG-HNNVYKATIFPHNVGLGVTRDPALVKKIGDATALEVRATGIPYVFA 168
IP++ ID G + + T FP N+ LG R + G E+ A GI F+
Sbjct: 116 -IPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFS 174
Query: 169 PCIAVCRDPRWGRC-YESYSEDHKIVQAM-TEIIPGLQGDLPANSKKGVPFXXXXXXXXX 226
P + + +P S+S + ++ + + GLQ A++ K
Sbjct: 175 PVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIASALK------------- 221
Query: 227 XXXHYVGDGGTTKGINENNTVIN--LNGLLSIHMPAYYNSISKGVATVMVSY-------- 276
H+ G G T + +++ L + + + +I G VM ++
Sbjct: 222 ---HFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDD 278
Query: 277 ----SSWNGKKMHA----NHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQ 328
S +G + + +++TG L+ ++ F G +++D + I H +V
Sbjct: 279 TTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIA--DHFGQEEAVV 336
Query: 329 AGVSAGIDMVMVP---------NNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKFVM 379
V AG+D+ ++P + I L + VK IP +I+++V+RI+ +K
Sbjct: 337 MAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKR 396
Query: 380 GLFDSPLADTS------LVNELGSQEHRELAREAVRKSLVLLKNGE 419
G++ + +D++ +GS++H + ++ K++ +LKN +
Sbjct: 397 GMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQ 442
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/433 (20%), Positives = 182/433 (42%), Gaps = 83/433 (19%)
Query: 42 LMSRMTLAEKIGQM-------------------TQIERAVATPDVMKQFFIGSVLSGGGS 82
+++RM+L EK+GQM T++ VA+ ++K++ G ++ +
Sbjct: 12 IVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVAS--LVKKYQFGGIILFAEN 69
Query: 83 VPAPKATAETWVNMVNGLQKGALSTRLGIPMIYGIDAVHG-HNNVYKATIFPHNVGLGVT 141
V K T V + + QK + IP++ ID G + + T FP N+ LG
Sbjct: 70 VKTTKQT----VQLTDDYQKASPK----IPLMLSIDQEGGIVTRLGEGTNFPGNMALGAA 121
Query: 142 RDPALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRC-YESYSEDHKIVQAM-TEI 199
R + G E+ A GI F+P + + +P S+S + ++ +
Sbjct: 122 RSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYT 181
Query: 200 IPGLQGDLPANSKKGVPFXXXXXXXXXXXXHYVGDGGTTKGINENNTVIN--LNGLLSIH 257
+ GLQ A++ K H+ G G T + +++ L +
Sbjct: 182 MKGLQRQDIASALK----------------HFPGHGDTDVDSHYGLPLVSHGQERLREVE 225
Query: 258 MPAYYNSISKGVATVMVSY------------SSWNGKKMHA----NHELVTGFLKNKLKF 301
+ + +I G VM ++ S +G + + +++TG L+ ++ F
Sbjct: 226 LYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGF 285
Query: 302 RGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMVP---------NNYKEFIDDLT 352
G ++++ + I H +V V AG+D+ ++P + I L
Sbjct: 286 NGVIVTNALNMKAIA--DHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALK 343
Query: 353 DQVKKNIIPMSRIDDAVKRILRVKFVMGLFDSPLADTS------LVNELGSQEHRELARE 406
+ VK IP +I+++V+RI+ +K G++ + +D++ +GS++H + ++
Sbjct: 344 EAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKK 403
Query: 407 AVRKSLVLLKNGE 419
K++ +LKN +
Sbjct: 404 LAEKAVTVLKNEQ 416
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/433 (20%), Positives = 182/433 (42%), Gaps = 83/433 (19%)
Query: 42 LMSRMTLAEKIGQM-------------------TQIERAVATPDVMKQFFIGSVLSGGGS 82
+++RM+L EK+GQM T++ VA+ ++K++ G ++ +
Sbjct: 42 IVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVAS--LVKKYQFGGIILFAEN 99
Query: 83 VPAPKATAETWVNMVNGLQKGALSTRLGIPMIYGIDAVHG-HNNVYKATIFPHNVGLGVT 141
V K T V + + QK + IP++ ID G + + T FP N+ LG
Sbjct: 100 VKTTKQT----VQLTDDYQKASPK----IPLMLSIDQEGGIVTRLGEGTNFPGNMALGAA 151
Query: 142 RDPALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRC-YESYSEDHKIVQAM-TEI 199
R + G E+ A GI F+P + + +P S+S + ++ +
Sbjct: 152 RSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYT 211
Query: 200 IPGLQGDLPANSKKGVPFXXXXXXXXXXXXHYVGDGGTTKGINENNTVIN--LNGLLSIH 257
+ GLQ A++ K H+ G G T + +++ L +
Sbjct: 212 MKGLQRQDIASALK----------------HFPGHGDTDVDSHYGLPLVSHGQERLREVE 255
Query: 258 MPAYYNSISKGVATVMVSY------------SSWNGKKMHA----NHELVTGFLKNKLKF 301
+ + +I G VM ++ S +G + + +++TG L+ ++ F
Sbjct: 256 LYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGF 315
Query: 302 RGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMVP---------NNYKEFIDDLT 352
G ++++ + I H +V V AG+D+ ++P + I L
Sbjct: 316 NGVIVTNALNMKAIA--DHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALK 373
Query: 353 DQVKKNIIPMSRIDDAVKRILRVKFVMGLFDSPLADTS------LVNELGSQEHRELARE 406
+ VK IP +I+++V+RI+ +K G++ + +D++ +GS++H + ++
Sbjct: 374 EAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKK 433
Query: 407 AVRKSLVLLKNGE 419
K++ +LKN +
Sbjct: 434 LAEKAVTVLKNEQ 446
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 48/325 (14%)
Query: 108 RLGIPMIYGIDAVHGHNNV-----YKATIFPHNVGLGVTRDPALVKKIGDATALEVRATG 162
RLGIP + D +G + FP+ GL T D L++ G A E A
Sbjct: 35 RLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKLXAKESIAKN 94
Query: 163 IPYVFAPCIAVCRDPRWGRCYESYSEDHKIV-QAMTEIIPGLQGDLPANSKKGVPFXXXX 221
+ P R P GR +ES+SED + A + ++ G QG+ A + K
Sbjct: 95 AAVILGPTTNXQRGPLGGRGFESFSEDPYLAGXATSSVVKGXQGEGIAATVK-------- 146
Query: 222 XXXXXXXXHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNSISKGV-ATVMVSYSSWN 280
H+V + + + +N++++ L I++ + ++ + +Y+ N
Sbjct: 147 --------HFVCNDLEDQRFS-SNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVN 197
Query: 281 GKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMV 340
G+ + +L+ L+++ K+ G + SDW G +Y+ A + G+D+
Sbjct: 198 GEHCSQSKKLLIDILRDEWKWDGXLXSDWFG------------TYTTAAAIKNGLDIEFP 245
Query: 341 -PNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILR-VKFVM------GLFDSPLADTSLV 392
P ++ + I +DD V+++L+ +KFV+ G+ ++ TS
Sbjct: 246 GPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKXIKFVVDNLEKTGIVENGPESTS-- 303
Query: 393 NELGSQEHRELAREAVRKSLVLLKN 417
++E +L R+ S+VLLKN
Sbjct: 304 --NNTKETSDLLRKIAADSIVLLKN 326
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 555 PYLAQIDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTW-FKTVDQ------------ 600
P+L +ALV AW G E G +ADVL+GD GKL+ +W FK D
Sbjct: 630 PWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGR 689
Query: 601 ----LPMNVGDPHYDPL-----FPFGFGLT 621
+ VG +Y+ L FPFG+GL+
Sbjct: 690 VIYGEDIFVGYRYYEKLQRKVAFPFGYGLS 719
>pdb|3SQL|A Chain A, Crystal Structure Of Glycoside Hydrolase From
Synechococcus
pdb|3SQL|B Chain B, Crystal Structure Of Glycoside Hydrolase From
Synechococcus
pdb|3SQM|A Chain A, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|B Chain B, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|C Chain C, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|D Chain D, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
Length = 535
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 129/295 (43%), Gaps = 49/295 (16%)
Query: 105 LSTRLGIPMIYGIDAVHGHNNVYK-ATIFPHNVGLG-VTR-DP----ALVKKIGDATALE 157
L + IP++ D G ++ AT FP G + R DP AL + G TA E
Sbjct: 78 LQSWAEIPLLIAADIEEGVGQRFRGATEFPPPXAFGEIWRTDPHQAIALAETXGATTAQE 137
Query: 158 VRATGIPYVFAPCIAVCRDPRWGRC-YESYSEDHKIVQAM-TEIIPGLQGDLPANSKKGV 215
+ GI +V AP + V +P ++ E V A+ T I G Q + K
Sbjct: 138 ALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAVLTTAK-- 195
Query: 216 PFXXXXXXXXXXXXHYVGDGGTTKG-------INENNTVINLNGLLSIHMPAYYNSISKG 268
H+ G G T I+ ++T +N ++ +P + +I G
Sbjct: 196 --------------HFPGHGDTATDSHLALPTISHDDTRLN-----TVELPPFKAAIQGG 236
Query: 269 VATVMVSY---SSWNGK-KMHANHELVTGFLKNKLKFRGFVISD---WEGIDRITAPPHA 321
V V ++ +W+ + + ++TG L++KL F+G +++D GI + AP
Sbjct: 237 VDAVXNAHLXIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVXGGITQFAAP--- 293
Query: 322 NYSYSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVK 376
+ VQA ++AG D+++ P + I + +K + SRI ++V+RI + K
Sbjct: 294 -DTVVVQA-IAAGADILLXPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAK 346
>pdb|1Z0E|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
Length = 205
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 319 PHANYSYSVQAGVSAGIDMVMVP-NNYKEFIDDLTDQVKKNIIPMSRIDDAVKRIL 373
P + ++A + AG+ V++P +N + + D + K +IP+SRI++ ++ +L
Sbjct: 129 PVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 184
>pdb|1Z0W|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain At
1.2a Resolution
Length = 207
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 319 PHANYSYSVQAGVSAGIDMVMVP-NNYKEFIDDLTDQVKKNIIPMSRIDDAVKRIL 373
P + ++A + AG+ V++P +N + + D + K +IP+SRI++ ++ +L
Sbjct: 131 PVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 186
>pdb|1Z0C|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
D508a Mutant
Length = 207
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 319 PHANYSYSVQAGVSAGIDMVMVP-NNYKEFIDDLTDQVKKNIIPMSRIDDAVKRIL 373
P + ++A + AG+ V++P +N + + D + K +IP+SRI++ ++ +L
Sbjct: 131 PVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 186
>pdb|1Z0B|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
E506a Mutant
Length = 207
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 319 PHANYSYSVQAGVSAGIDMVMVP-NNYKEFIDDLTDQVKKNIIPMSRIDDAVKRIL 373
P + ++A + AG+ V++P +N + + D + K +IP+SRI++ ++ +L
Sbjct: 131 PVGGVTQKIEAAIQAGLKKVIIPKDNIDDVLLDAEHEGKIEVIPVSRINEVLEHVL 186
>pdb|1D02|A Chain A, Crystal Structure Of Muni Restriction Endonuclease In
Complex With Cognate Dna
pdb|1D02|B Chain B, Crystal Structure Of Muni Restriction Endonuclease In
Complex With Cognate Dna
Length = 202
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 454 ITWQGLGGNDLTAGSTILHAVSNTVDPTTQVVFNENPDANFVKSNKFSYAIVVVGEQPYA 513
+ WQ L G + L+ V N V T+ V E P K K YA VV+ +
Sbjct: 10 LNWQALAGLKASGAEQNLYNVFNAVFEGTKYVLYEKP-----KHLKNLYAQVVLPDDVIK 64
Query: 514 ETYGDSLNLTISEPGLS 530
E + ++L+ ++ G+S
Sbjct: 65 EIFNPLIDLSTTQWGVS 81
>pdb|2M04|A Chain A, Solution Structure Of Bcl-xl In Complex With Puma Bh3
Peptide
Length = 180
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 285 HANHELVTGFLKNKLKFRGFVISDWEGID--RITAPPHANYSYSVQAGVSAGIDMVMVPN 342
+N ELV FL KL +G+ S + ++ R AP QA AG + +
Sbjct: 6 QSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFEL--- 62
Query: 343 NYKEFIDDLTDQV 355
Y+ DLT Q+
Sbjct: 63 RYRRAFSDLTSQL 75
>pdb|1G5J|A Chain A, Complex Of Bcl-Xl With Peptide From Bad
Length = 175
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 285 HANHELVTGFLKNKLKFRGFVISDWEGID--RITAPPHANYSYSVQAGVSAGIDMVMVPN 342
+N ELV FL KL +G+ S + ++ R AP QA AG + +
Sbjct: 7 QSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFEL--- 63
Query: 343 NYKEFIDDLTDQV 355
Y+ DLT Q+
Sbjct: 64 RYRRAFSDLTSQL 76
>pdb|1YSG|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl In
Complex With "sar By Nmr" Ligands
pdb|1YSI|A Chain A, Solution Structure Of The Anti-apoptotic Protein Bcl-xl In
Complex With An Acyl-sulfonamide-based Ligand
pdb|1YSN|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl
Complexed With An Acyl-Sulfonamide-Based Ligand
pdb|2O1Y|A Chain A, Solution Structure Of The Anti-Apoptotic Protein Bcl-Xl In
Complex With An Acyl-Sulfonamide-Based Ligand
pdb|2YXJ|A Chain A, Crystal Structure Of Bcl-Xl In Complex With Abt-737
pdb|2YXJ|B Chain B, Crystal Structure Of Bcl-Xl In Complex With Abt-737
pdb|3PL7|A Chain A, Crystal Structure Of Bcl-Xl In Complex With The Baxbh3
Domain
pdb|3PL7|B Chain B, Crystal Structure Of Bcl-Xl In Complex With The Baxbh3
Domain
pdb|3QKD|A Chain A, Crystal Structure Of Bcl-Xl In Complex With A Quinazoline
Sulfonamide Inhibitor
pdb|3QKD|B Chain B, Crystal Structure Of Bcl-Xl In Complex With A Quinazoline
Sulfonamide Inhibitor
pdb|2M03|A Chain A, Solution Structure Of Bcl-xl Determined With Selective
Isotope Labelling Of I,l,v Sidechains
Length = 181
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 285 HANHELVTGFLKNKLKFRGFVISDWEGID--RITAPPHANYSYSVQAGVSAGIDMVMVPN 342
+N ELV FL KL +G+ S + ++ R AP QA AG + +
Sbjct: 7 QSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFEL--- 63
Query: 343 NYKEFIDDLTDQV 355
Y+ DLT Q+
Sbjct: 64 RYRRAFSDLTSQL 76
>pdb|3SP7|A Chain A, Crystal Structure Of Bcl-Xl Bound To Bm903
Length = 172
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 285 HANHELVTGFLKNKLKFRGFVISDWEGID--RITAPPHANYSYSVQAGVSAGIDMVMVPN 342
+N ELV FL KL +G+ S + ++ R AP QA AG + +
Sbjct: 6 QSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFEL--- 62
Query: 343 NYKEFIDDLTDQV 355
Y+ DLT Q+
Sbjct: 63 RYRRAFSDLTSQL 75
>pdb|3SPF|A Chain A, Crystal Structure Of Bcl-Xl Bound To Bm501
Length = 171
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 285 HANHELVTGFLKNKLKFRGFVISDWEGID--RITAPPHANYSYSVQAGVSAGIDMVMVPN 342
+N ELV FL KL +G+ S + ++ R AP QA AG + +
Sbjct: 6 QSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFEL--- 62
Query: 343 NYKEFIDDLTDQV 355
Y+ DLT Q+
Sbjct: 63 RYRRAFSDLTSQL 75
>pdb|4EHR|A Chain A, Crystal Structure Of Bcl-Xl Complex With
4-(5-Butyl-3-(Hydroxymethyl)-
1-Phenyl-1h-Pyrazol-4-Yl)-3-(3,4-Dihydro-2(1h)-
Isoquinolinylcarbonyl)-N-((2-
(Trimethylsilyl)ethyl)sulfonyl)benzamide
Length = 172
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 285 HANHELVTGFLKNKLKFRGFVISDWEGID--RITAPPHANYSYSVQAGVSAGIDMVMVPN 342
+N ELV FL KL +G+ S + ++ R AP QA AG + +
Sbjct: 6 QSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFEL--- 62
Query: 343 NYKEFIDDLTDQV 355
Y+ DLT Q+
Sbjct: 63 RYRRAFSDLTSQL 75
>pdb|2LPC|A Chain A, Nmr Structure Of Bcl-Xl
pdb|2LP8|A Chain A, Solution Structure Of An Apoptosis Activating
Photoswitchable Bak Peptide Bound To Bcl-Xl
Length = 185
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 285 HANHELVTGFLKNKLKFRGFVISDWEGID--RITAPPHANYSYSVQAGVSAGIDMVMVPN 342
+N ELV FL KL +G+ S + ++ R AP QA AG + +
Sbjct: 3 QSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFEL--- 59
Query: 343 NYKEFIDDLTDQV 355
Y+ DLT Q+
Sbjct: 60 RYRRAFSDLTSQL 72
>pdb|2PON|B Chain B, Solution Structure Of The Bcl-XlBECLIN-1 Complex
Length = 156
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 285 HANHELVTGFLKNKLKFRGFVISDWEGID--RITAPPHANYSYSVQAGVSAGIDMVMVPN 342
+N ELV FL KL +G+ S + ++ R AP QA AG + +
Sbjct: 3 QSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEAVKQALREAGDEFEL--- 59
Query: 343 NYKEFIDDLTDQV 355
Y+ DLT Q+
Sbjct: 60 RYRRAFSDLTSQL 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,166,144
Number of Sequences: 62578
Number of extensions: 731897
Number of successful extensions: 1762
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1676
Number of HSP's gapped (non-prelim): 50
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)