Query 006872
Match_columns 628
No_of_seqs 239 out of 1655
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 15:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15098 beta-D-glucoside gluc 100.0 3E-115 6E-120 1001.4 54.2 556 31-627 30-653 (765)
2 PLN03080 Probable beta-xylosid 100.0 8E-110 2E-114 952.6 49.2 535 25-627 39-638 (779)
3 COG1472 BglX Beta-glucosidase- 100.0 2.3E-74 5E-79 612.9 30.4 366 46-457 1-375 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 3.1E-71 6.7E-76 575.4 21.9 295 47-375 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 1.6E-60 3.5E-65 497.8 25.6 279 64-379 17-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 2E-35 4.3E-40 295.7 10.9 201 412-624 1-227 (227)
7 PF05690 ThiG: Thiazole biosyn 80.8 6.7 0.00015 39.0 7.7 90 258-360 134-229 (247)
8 CHL00162 thiG thiamin biosynth 78.3 9.1 0.0002 38.5 7.8 90 258-360 148-243 (267)
9 COG2022 ThiG Uncharacterized e 68.7 16 0.00035 36.2 6.8 87 261-360 144-236 (262)
10 PRK00208 thiG thiazole synthas 65.8 25 0.00053 35.4 7.6 84 261-359 137-228 (250)
11 PRK11840 bifunctional sulfur c 61.1 30 0.00065 36.3 7.5 86 261-360 211-303 (326)
12 cd04728 ThiG Thiazole synthase 56.3 45 0.00098 33.5 7.6 85 261-360 137-229 (248)
13 PF13653 GDPD_2: Glycerophosph 51.7 13 0.00028 24.5 2.0 17 260-276 12-28 (30)
14 cd00938 HisRS_RNA HisRS_RNA bi 50.7 36 0.00078 24.7 4.2 31 350-380 12-42 (45)
15 PF09851 SHOCT: Short C-termin 40.0 73 0.0016 21.0 4.2 27 347-373 4-30 (31)
16 COG0486 ThdF Predicted GTPase 39.6 5.7E+02 0.012 28.3 15.7 102 264-385 60-178 (454)
17 PRK10415 tRNA-dihydrouridine s 36.8 5.2E+02 0.011 27.1 13.6 163 141-359 73-245 (321)
18 PF09373 PMBR: Pseudomurein-bi 34.5 68 0.0015 21.5 3.5 26 357-382 2-27 (33)
19 PRK13533 7-cyano-7-deazaguanin 33.2 92 0.002 34.9 6.3 71 266-340 49-121 (487)
20 PRK01008 queuine tRNA-ribosylt 30.9 59 0.0013 35.0 4.2 17 295-311 76-92 (372)
21 COG1647 Esterase/lipase [Gener 30.9 1.5E+02 0.0033 29.5 6.6 90 185-305 23-112 (243)
22 PF08044 DUF1707: Domain of un 28.6 99 0.0021 23.3 3.9 34 345-378 9-42 (53)
23 PRK05848 nicotinate-nucleotide 28.2 1.8E+02 0.004 29.9 7.1 38 293-342 173-210 (273)
24 PLN03007 UDP-glucosyltransfera 28.0 1.1E+02 0.0025 34.1 6.1 73 301-373 344-438 (482)
25 PF11471 Sugarporin_N: Maltopo 26.8 1E+02 0.0023 23.8 3.8 21 33-53 28-48 (60)
26 COG2003 RadC DNA repair protei 26.7 55 0.0012 32.4 2.8 53 260-312 157-210 (224)
27 PF11466 Doppel: Prion-like pr 25.9 59 0.0013 21.2 1.9 18 5-22 9-26 (30)
28 PF04202 Mfp-3: Foot protein 3 25.4 68 0.0015 25.1 2.5 24 1-24 1-24 (71)
29 KOG2792 Putative cytochrome C 24.7 1.5E+02 0.0033 30.1 5.4 75 85-169 151-228 (280)
30 TIGR00737 nifR3_yhdG putative 23.9 8.3E+02 0.018 25.4 14.0 52 324-375 204-263 (319)
31 TIGR01305 GMP_reduct_1 guanosi 23.5 1.6E+02 0.0035 31.2 5.6 69 261-341 164-241 (343)
32 PLN00164 glucosyltransferase; 22.9 1.3E+02 0.0028 33.6 5.3 72 299-373 336-429 (480)
33 PRK12277 50S ribosomal protein 21.5 44 0.00095 27.5 0.9 23 156-178 37-59 (83)
34 PRK00112 tgt queuine tRNA-ribo 21.4 1.5E+02 0.0033 31.8 5.2 72 295-378 78-170 (366)
35 PF15448 NTS_2: N-terminal seg 21.3 1.2E+02 0.0025 21.9 2.8 29 30-58 2-30 (51)
36 KOG3333 Mitochondrial/chloropl 20.9 91 0.002 28.8 2.8 48 118-165 78-125 (188)
37 PLN02764 glycosyltransferase f 20.5 2E+02 0.0043 32.0 6.0 72 300-374 315-406 (453)
38 PRK13534 7-cyano-7-deazaguanin 20.1 2E+02 0.0044 33.4 6.2 73 266-340 46-120 (639)
No 1
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=2.8e-115 Score=1001.41 Aligned_cols=556 Identities=30% Similarity=0.535 Sum_probs=470.9
Q ss_pred CCCCHHHHHHHHHhhCCHHHHHhcccccccCCC-----chHHHhhcccceEEeCCCCCCCCCCCHHHHHHHHHHHHHhhh
Q 006872 31 PKQPLGARIRDLMSRMTLAEKIGQMTQIERAVA-----TPDVMKQFFIGSVLSGGGSVPAPKATAETWVNMVNGLQKGAL 105 (628)
Q Consensus 31 ~~~~~~~rv~~ll~~mtleeKigQl~~~~~~~~-----~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~~ 105 (628)
++.+.++|+++++++||||||||||+++..... ..++|+++++|||+.. .+++++ +.+|+.+.
T Consensus 30 ~~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~--------~~~~~~----~~lq~~~~ 97 (765)
T PRK15098 30 TPEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNT--------VTRQDI----RAMQDQVM 97 (765)
T ss_pred CCcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcC--------cCHHHH----HHHHHHHh
Confidence 345789999999999999999999998764432 2457899999999732 244544 45666554
Q ss_pred -ccCCCCCcEEEecCCCCcccCCCCcCCCccccccccCCHHHHHHHHHHHHHHHHHcCCCeeecccccccCCCCCCcccc
Q 006872 106 -STRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGVTRDPALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRCYE 184 (628)
Q Consensus 106 -~~~~giP~~i~~D~e~G~~~~~~~t~fP~~~~laat~d~~la~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~gr~~r 184 (628)
.++++||+++++|+|||. .|.||+++++|||||+++++++|+++|+|+|++|||++||||+||.|||+|||++|
T Consensus 98 ~~~~~giP~li~~D~e~G~-----~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~Gin~~laPv~Dv~r~p~~gr~~r 172 (765)
T PRK15098 98 QLSRLKIPLFFAYDVVHGQ-----RTVFPISLGLASSWDLDAVATVGRVSAYEAADDGLNMTWAPMVDISRDPRWGRASE 172 (765)
T ss_pred hCCCCCCCeeEEEeCCCCc-----cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCEEeeCcccccCCCCcccccc
Confidence 478899999999999997 47899999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHh-ccccccCCCCCCCCCCCccccCCCceeeeecccccCCCCCCCCCCCCccCCHhHHHhhccHHHHH
Q 006872 185 SYSEDHKIVQAMTE-IIPGLQGDLPANSKKGVPFVAGKKKVAACAKHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYN 263 (628)
Q Consensus 185 sfgeDp~lv~~~a~-~v~G~q~~~~~~~~~~~~~~~g~~gv~~~~KHFpG~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~ 263 (628)
||||||+++++|+. ||+|+|+.+.. +..||++|+|||||||.++.++|.....+++++|++.||+||++
T Consensus 173 sfgeDP~lv~~~~~a~v~GlQ~~~~~----------~~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~ 242 (765)
T PRK15098 173 GFGEDTYLTSIMGKTMVKAMQGKSPA----------DRYSVMTSVKHFALYGAVEGGRDYNTVDMSPQRMFNDYLPPYKA 242 (765)
T ss_pred CcCCCHHHHHHHHHHHHHHHcCCCCC----------CCCCEEEECcEEeCCCCcccCccCccCcCCHHHHHHHHHHHHHH
Confidence 99999999999997 99999963210 03589999999999999888888777778999999999999999
Q ss_pred HHHcCcceEEEeccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCC-CCChhHHHHHHHHcCCCeeccCC
Q 006872 264 SISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPP-HANYSYSVQAGVSAGIDMVMVPN 342 (628)
Q Consensus 264 ~i~~g~~~vM~sy~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~-~~~~~~~~~~al~AG~D~~l~~~ 342 (628)
+|++|+.+|||||+.+||.|+|+|+++|+++||+||||+|+|||||++|.++..++ ..+..+++++|++||+||+|.+.
T Consensus 243 ai~ag~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~~~~~~~~~ea~~~Al~AG~Dl~m~~~ 322 (765)
T PRK15098 243 GLDAGSGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIKHGVAADPEDAVRLALKSGIDMSMSDE 322 (765)
T ss_pred HHHhCCCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHhcccCCCHHHHHHHHHHcCCCcccCch
Confidence 99999999999999999999999999999999999999999999999999876421 13457889999999999998643
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcc------hhhccCCHHHHHHHHHHHHhhhhhhc
Q 006872 343 NYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKFVMGLFDSPLADTS------LVNELGSQEHRELAREAVRKSLVLLK 416 (628)
Q Consensus 343 ~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~gl~~~p~~~~~------~~~~~~~~~~~~la~~~a~~sivLLK 416 (628)
. +.+.|.+||++|.|+++|||+||+|||++|+++|+|++|+.+.. ....+.+++|+++++++|++||||||
T Consensus 323 ~---~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLK 399 (765)
T PRK15098 323 Y---YSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLK 399 (765)
T ss_pred h---HHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCCCCccccccccccccccccCCHHHHHHHHHHHHhcEEEEe
Confidence 2 34568999999999999999999999999999999999975421 11234678999999999999999999
Q ss_pred cCCCCCCCcccCCCCCCeEEEEcccCCccCcccCCcEEeecCCCCCCCCCccCHHHHHhcccCCCceEEecCCCC-----
Q 006872 417 NGEAADKPLLPLPKKASKILVAGSHADNLGYQCGGWTITWQGLGGNDLTAGSTILHAVSNTVDPTTQVVFNENPD----- 491 (628)
Q Consensus 417 N~~~~e~~~LPL~~~~~ki~vig~~a~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~----- 491 (628)
| ++++|||+++ +||+|+|++++.....+|+|+.. +. ..+..|++++|++.+.....+.|..+.+
T Consensus 400 N----~~~~LPL~~~-~~IaviG~~a~~~~~~~G~~s~~-----~~-~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~ 468 (765)
T PRK15098 400 N----RLETLPLKKS-GTIAVVGPLADSQRDVMGSWSAA-----GV-ADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDK 468 (765)
T ss_pred c----CCCCCCCCCC-CEEEEECCCcccccccCCCcccc-----Cc-cCCCCCHHHHHHHhhcCCceEEEecccccccCc
Confidence 9 6789999864 79999999998876667777521 21 2355799999998775544555543221
Q ss_pred --------------------h-----hHHhhcCCceEEEEEeccCCccccC-CCccccCChhhHHHHHHHhc-CCCeEEE
Q 006872 492 --------------------A-----NFVKSNKFSYAIVVVGEQPYAETYG-DSLNLTISEPGLSTITNVCG-AVKCVVV 544 (628)
Q Consensus 492 --------------------~-----~~~~~~~~D~~iv~vg~~~~~e~~g-d~~~l~l~~~~~~li~~v~~-~~~~VvV 544 (628)
. ....++.+|++||++|.....+.++ ||.++.||..|.+||+++++ ++|+|||
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~~~~vVvV 548 (765)
T PRK15098 469 GIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLV 548 (765)
T ss_pred ccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHhCcCEEEE
Confidence 0 1122468999999999887666665 99999999999999999987 8899999
Q ss_pred EECCccccccccccCcceeEEccCCCch-hHHHHHHHhcCCCCCccccccccccCCCCCCCC-----------------C
Q 006872 545 VISGRPVVIQPYLAQIDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTWFKTVDQLPMNV-----------------G 606 (628)
Q Consensus 545 ~~~g~P~~l~~~~~~v~ail~a~~~g~~-g~a~advL~G~~~PsGkLPvt~p~~~~~~p~~~-----------------g 606 (628)
+++|+|+++.++.++++|||++|+||++ |+|+||||||++|||||||+|||++.+++|.++ +
T Consensus 549 l~~g~P~~l~~~~~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~p~~~~~~P~~~~~~~~~~~y~e~~~~~y~ 628 (765)
T PRK15098 549 LMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYNHLNTGRPYNPDKPNKYT 628 (765)
T ss_pred EeCCceeeccchhhcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccceeCCCCcCccccccCCCCCccccCcccccc
Confidence 9999999995433589999999999999 999999999999999999999999999998642 3
Q ss_pred CCCC----CccccCCCCCCCCCCCC
Q 006872 607 DPHY----DPLFPFGFGLTTKPTKG 627 (628)
Q Consensus 607 ~~~~----~~~~pFG~GLsYt~~~~ 627 (628)
|||| +|+||||||||||+|+.
T Consensus 629 yry~d~~~~plypFG~GLSYT~F~y 653 (765)
T PRK15098 629 SRYFDEANGPLYPFGYGLSYTTFTV 653 (765)
T ss_pred cceeccCCCccccccCCCCCccEEe
Confidence 4666 48999999999999973
No 2
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=7.6e-110 Score=952.61 Aligned_cols=535 Identities=29% Similarity=0.464 Sum_probs=445.1
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCHHHHHhcccccccCCCchHHHhhcccceEEeCCCCCCCCCCCHHHHHHHHHHHHHhh
Q 006872 25 YIKYKDPKQPLGARIRDLMSRMTLAEKIGQMTQIERAVATPDVMKQFFIGSVLSGGGSVPAPKATAETWVNMVNGLQKGA 104 (628)
Q Consensus 25 ~~~~~~~~~~~~~rv~~ll~~mtleeKigQl~~~~~~~~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~ 104 (628)
..||||++++.++|+++||++||||||++||..- ..
T Consensus 39 ~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~--------------------------------------------~~ 74 (779)
T PLN03080 39 AYPFCNASLPIPARARSLVSLLTLDEKIAQLSNT--------------------------------------------AA 74 (779)
T ss_pred CCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCC--------------------------------------------CC
Confidence 4689999999999999999999999999998410 01
Q ss_pred hccCCCCCcE-EEecCCCCcccC-----------CCCcCCCccccccccCCHHHHHHHHHHHHHHHHHc------CCCee
Q 006872 105 LSTRLGIPMI-YGIDAVHGHNNV-----------YKATIFPHNVGLGVTRDPALVKKIGDATALEVRAT------GIPYV 166 (628)
Q Consensus 105 ~~~~~giP~~-i~~D~e~G~~~~-----------~~~t~fP~~~~laat~d~~la~~~g~~~a~e~~a~------Gin~~ 166 (628)
..+|+|||.+ +..|+.||+... .++|.||+++++|||||+++++++|+++|+|+|++ |+++
T Consensus 75 ~vpRlGIP~~~~~~d~~hGv~~~~~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~- 153 (779)
T PLN03080 75 GVPRLGIPPYEWWSESLHGLADNGPGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTF- 153 (779)
T ss_pred CCCcCCCCccceecccccccccCCCccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcce-
Confidence 2468899999 999999998521 24689999999999999999999999999999998 6774
Q ss_pred ecccccccCCCCCCccccccCCCHHHHHHHHh-ccccccCCCCCCCCCCCccccCCCceeeeecccccCCCCCC---CCC
Q 006872 167 FAPCIAVCRDPRWGRCYESYSEDHKIVQAMTE-IIPGLQGDLPANSKKGVPFVAGKKKVAACAKHYVGDGGTTK---GIN 242 (628)
Q Consensus 167 ~aPv~Dv~~~p~~gr~~rsfgeDp~lv~~~a~-~v~G~q~~~~~~~~~~~~~~~g~~gv~~~~KHFpG~g~~~~---~~~ 242 (628)
|+|++||.|||+|||++|||||||+++++|++ ||+|+|+.+..+..... -.|..+|++|+||||||+.+.. +++
T Consensus 154 ~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~--~~~~~~V~a~~KHF~g~~~e~~~~~~r~ 231 (779)
T PLN03080 154 WAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDG--EDGKLMLSACCKHYTAYDLEKWGNFSRY 231 (779)
T ss_pred eecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccc--cCCCceEEEECCeeeCCCccccCCcccc
Confidence 99999999999999999999999999999997 99999963110000000 0001249999999999998753 344
Q ss_pred CCCccCCHhHHHhhccHHHHHHHHcC-cceEEEeccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCC-
Q 006872 243 ENNTVINLNGLLSIHMPAYYNSISKG-VATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPH- 320 (628)
Q Consensus 243 ~~~~~~~~~~l~~~~l~pF~~~i~~g-~~~vM~sy~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~- 320 (628)
..+..+++++|+|.||+||+++|++| +.+||||||++||+|+|.|+++|+. ||+||||+|+|||||++|..+...+.
T Consensus 232 ~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~~~ 310 (779)
T PLN03080 232 TFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQTY 310 (779)
T ss_pred CccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcccc
Confidence 45667899999999999999999987 6799999999999999999999986 99999999999999999998876433
Q ss_pred -CChhHHHHHHHHcCCCeeccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcc----hhhcc
Q 006872 321 -ANYSYSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKFVMGLFDSPLADTS----LVNEL 395 (628)
Q Consensus 321 -~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~~gl~~~p~~~~~----~~~~~ 395 (628)
.+.++++++||+||+||+|.. .+.+.|.+||++|++++++||+||+|||++|+++|+|++|+.... ....+
T Consensus 311 ~~~~~ea~~~Al~AG~Dl~~~~----~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v 386 (779)
T PLN03080 311 TKSPEDAVADVLKAGMDINCGS----YMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNV 386 (779)
T ss_pred cCCHHHHHHHHHHcCCCcccCc----hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccccccc
Confidence 245678899999999999743 245689999999999999999999999999999999997653211 12467
Q ss_pred CCHHHHHHHHHHHHhhhhhhccCCCCCCCcccCCCC-CCeEEEEcccCCccCcccCCcEEeecCCCCCCCCCccCHHHHH
Q 006872 396 GSQEHRELAREAVRKSLVLLKNGEAADKPLLPLPKK-ASKILVAGSHADNLGYQCGGWTITWQGLGGNDLTAGSTILHAV 474 (628)
Q Consensus 396 ~~~~~~~la~~~a~~sivLLKN~~~~e~~~LPL~~~-~~ki~vig~~a~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~l 474 (628)
.+++|+++|+++|++||||||| ++++|||+++ .+||+||||+++....++|+|+ +. .....+++++|
T Consensus 387 ~~~~h~~lA~eaA~~siVLLKN----~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~-------~~-~~~~~t~~~gl 454 (779)
T PLN03080 387 CTKEHRELALEAARQGIVLLKN----DKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYT-------GV-PCQPTTLFKGL 454 (779)
T ss_pred CCHHHHHHHHHHHHhCEEEEec----CCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCC-------CC-CCCCCCHHHHH
Confidence 8999999999999999999999 7789999864 3799999999998776666653 11 12457899999
Q ss_pred hcccCCCceEEecCCCC-----------hhHHhhcCCceEEEEEeccCCccccC-CCccccCChhhHHHHHHHhc-C-CC
Q 006872 475 SNTVDPTTQVVFNENPD-----------ANFVKSNKFSYAIVVVGEQPYAETYG-DSLNLTISEPGLSTITNVCG-A-VK 540 (628)
Q Consensus 475 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~iv~vg~~~~~e~~g-d~~~l~l~~~~~~li~~v~~-~-~~ 540 (628)
++++.. +.|..+.+ .....++.+|++||++|.+...+.++ ||.+|.||..|.+||+++++ + +|
T Consensus 455 ~~~~~~---~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~p 531 (779)
T PLN03080 455 QAYVKK---TSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKP 531 (779)
T ss_pred HHHhhc---ceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCC
Confidence 987532 33433221 11223568999999999887766666 99999999999999999997 4 47
Q ss_pred eEEEEECCcccccccccc---CcceeEEccCCCch-hHHHHHHHhcCCCCCccccccc-cccCCCCCCC-C---------
Q 006872 541 CVVVVISGRPVVIQPYLA---QIDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTW-FKTVDQLPMN-V--------- 605 (628)
Q Consensus 541 ~VvV~~~g~P~~l~~~~~---~v~ail~a~~~g~~-g~a~advL~G~~~PsGkLPvt~-p~~~~~~p~~-~--------- 605 (628)
+|||+++|+|+++ +|.+ +++|||++|+||++ |+|+||||||++|||||||+|| |++..++|++ +
T Consensus 532 vIvVl~~g~Pv~l-~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~~~~P~~~~~~~~~~~~~ 610 (779)
T PLN03080 532 VVLVLTGGGPVDV-SFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESFTAVPMTDMNMRADPSRG 610 (779)
T ss_pred EEEEEeCCceeec-cchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeecccccccCCccccCcccccccC
Confidence 8999999999999 5543 79999999999999 9999999999999999999999 8888899975 1
Q ss_pred ----CCCCC--CccccCCCCCCCCCCCC
Q 006872 606 ----GDPHY--DPLFPFGFGLTTKPTKG 627 (628)
Q Consensus 606 ----g~~~~--~~~~pFG~GLsYt~~~~ 627 (628)
+|||| +|+||||||||||+|+.
T Consensus 611 ~pg~~Yr~~~~~p~ypFG~GLSYTtF~y 638 (779)
T PLN03080 611 YPGRTYRFYTGDVVYGFGYGLSYTKFSY 638 (779)
T ss_pred CCCCCceeCCCCcceeccCCCccceeEe
Confidence 38888 59999999999999973
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-74 Score=612.94 Aligned_cols=366 Identities=37% Similarity=0.585 Sum_probs=319.2
Q ss_pred CCHHHHHhcccccccCCCch--HHHhhcccceEEeCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEecCCCCc
Q 006872 46 MTLAEKIGQMTQIERAVATP--DVMKQFFIGSVLSGGGSVPAPKATAETWVNMVNGLQKGALSTRLGIPMIYGIDAVHGH 123 (628)
Q Consensus 46 mtleeKigQl~~~~~~~~~~--~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~~giP~~i~~D~e~G~ 123 (628)
||++||++||.+.+...... ....+.++||++++. +|..+.+|++.++..++. .|++||+++++|+|||.
T Consensus 1 m~~~~k~~ql~~~g~~~~~e~~~~~~~~~~~g~il~~----~n~~~~~~~~~~~~~~~~----~r~~iplli~~D~egG~ 72 (397)
T COG1472 1 MTLEEKVGQLGIAGLELTPEEAARLADPLVGGIILFG----RNIDDREQLRALVAAIRE----ARLGIPLLIAIDQEGGR 72 (397)
T ss_pred CCccccceeeeccCccCCHHHHhhhhccCcceeEeec----cCccchHHHHHHHHHHhh----hccCCCeEEEEecCCCe
Confidence 89999999999886633322 234445699998873 466677787777776664 36789999999999999
Q ss_pred ccCCC--CcCCCccccccccCCHHHHHHHHHHHHHHHHHcCCCeeecccccccCCCCCCcc-ccccCCCHHHHHHHHh-c
Q 006872 124 NNVYK--ATIFPHNVGLGVTRDPALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRC-YESYSEDHKIVQAMTE-I 199 (628)
Q Consensus 124 ~~~~~--~t~fP~~~~laat~d~~la~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~gr~-~rsfgeDp~lv~~~a~-~ 199 (628)
++|.. +|.||+++++||+||+++++++|+.+|+|+|++|||++||||+||.|||+|||. .|+|||||++|+.|+. |
T Consensus 73 v~r~~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~ 152 (397)
T COG1472 73 VQRLREGFTVFPAALALAATWDPELARKVGRVIAKELRALGINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAF 152 (397)
T ss_pred eeeccCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHcCCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHH
Confidence 98754 799999999999999999999999999999999999999999999999999994 5559999999999997 9
Q ss_pred cccccCCCCCCCCCCCccccCCCceeeeecccccCCCCCCCCCCCCccCCHhHHHhhccHHHHHHHHcC---cceEEEec
Q 006872 200 IPGLQGDLPANSKKGVPFVAGKKKVAACAKHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNSISKG---VATVMVSY 276 (628)
Q Consensus 200 v~G~q~~~~~~~~~~~~~~~g~~gv~~~~KHFpG~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i~~g---~~~vM~sy 276 (628)
|+||| ..||++|+|||||||.++.|+|..+..++.+.|++.++.||+.+++++ +.++|++|
T Consensus 153 i~Glq----------------~~gv~at~KHFpGhG~~~~dsh~~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y 216 (397)
T COG1472 153 IKGLQ----------------GAGVAATIKHFPGHGAVEGDSHYGLLPIDPRALRELYLPPFQPAIALGDDAAMTAHVAY 216 (397)
T ss_pred HHHHh----------------hCCceeeeccccCCCCCcCCcccccCCCChHHHHHhhccchHHHHHhccccceEEeeec
Confidence 99999 589999999999999999999988777899999999999999999999 78889999
Q ss_pred cccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCeeccCCChHHHHHHHHHHHH
Q 006872 277 SSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVK 356 (628)
Q Consensus 277 ~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~ 356 (628)
+.+|+.|+|.|+++|+++||++|||+|+|||||++|.++...++ ...+.+..+++|||||+|.|.+....+..+..++.
T Consensus 217 ~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g-~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~ 295 (397)
T COG1472 217 PKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHG-SAADRAEAALKAGVDIVLVCNELYEAYLVVLELVG 295 (397)
T ss_pred cCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhcc-CHHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998776443 23556677999999999999875544444444433
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCcchhhccCCHHHHHHHHHHHHhhhhhhccCCCCCCCcccCCCCCCeEE
Q 006872 357 KNIIPMSRIDDAVKRILRVKFVMGLFDSPLADTSLVNELGSQEHRELAREAVRKSLVLLKNGEAADKPLLPLPKKASKIL 436 (628)
Q Consensus 357 ~g~i~~~~id~av~Ril~~k~~~gl~~~p~~~~~~~~~~~~~~~~~la~~~a~~sivLLKN~~~~e~~~LPL~~~~~ki~ 436 (628)
+++++++++++|||++|+++|+|++|+.+ +|++++++++++|+||||| +..+||++++.++|+
T Consensus 296 ---~~~~~i~~~v~Ril~~k~~~~~f~~~~~~----------~~~~~a~~~~~~~~~ll~n----~~~~~p~~~~~~~i~ 358 (397)
T COG1472 296 ---LSEARLDDAVRRILRVKFKLGLFENPYSS----------EHRALAREAARESIVLLKN----DGGLLPLKKSAKRIA 358 (397)
T ss_pred ---CcHHHHHHHHHHHHHHHHHhccccCCCch----------hhHHHHHHHHHHHHHHHHh----ccCCCccccccCceE
Confidence 99999999999999999999999999865 7999999999999999999 678999995456999
Q ss_pred EEcccCCccCcccCCcEEeec
Q 006872 437 VAGSHADNLGYQCGGWTITWQ 457 (628)
Q Consensus 437 vig~~a~~~~~~~g~~~~~~~ 457 (628)
|+||++++. . |+|+ .+.
T Consensus 359 v~g~~~~~~-~--g~~~-~~~ 375 (397)
T COG1472 359 VIGPYADDG-D--GGWS-VGG 375 (397)
T ss_pred EEccccccC-C--CCee-ecc
Confidence 999999987 4 7887 543
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=3.1e-71 Score=575.37 Aligned_cols=295 Identities=34% Similarity=0.547 Sum_probs=252.5
Q ss_pred CHHHHHhcccccccCCCchHHHhhcccceEEeCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEecCCCCcccC
Q 006872 47 TLAEKIGQMTQIERAVATPDVMKQFFIGSVLSGGGSVPAPKATAETWVNMVNGLQKGALSTRLGIPMIYGIDAVHGHNNV 126 (628)
Q Consensus 47 tleeKigQl~~~~~~~~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~~giP~~i~~D~e~G~~~~ 126 (628)
|||||||||++ ...+.++++++|||++ ++++..+++.+|.....+++++|+++++|+|||.+.+
T Consensus 1 TleeKigQl~~-----~~~~~i~~~~vGgv~~-----------~~~~~~~~~~~~~~~~~~~~~iP~~i~~D~egG~~~~ 64 (299)
T PF00933_consen 1 TLEEKIGQLFM-----ELKELIKEYHVGGVIL-----------PEQLKQLTQSLQAISEQSRLGIPLLIAIDQEGGIVQR 64 (299)
T ss_dssp -HHHHHHHTEE-----HHHHHHHHHTCSEEEE-----------HHHHHHHHHHHHHHHCCGCGTCT-EEEEEETTSTTTS
T ss_pred CHHHHHHHHHH-----HHHHHHhcCCccEEEc-----------HHHHHHHHHHHHHHhhccccCCCeEEEEcCCCceEec
Confidence 89999999997 5567899999999997 6788899998998887889999999999999999887
Q ss_pred CC--CcCCCccccccccCCHHHHHHHHHHHHHHHHHcCCCeeecccccccCCCCCCccccccCCCHHHHHHHHh-ccccc
Q 006872 127 YK--ATIFPHNVGLGVTRDPALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQAMTE-IIPGL 203 (628)
Q Consensus 127 ~~--~t~fP~~~~laat~d~~la~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~gr~~rsfgeDp~lv~~~a~-~v~G~ 203 (628)
.. +|.||+++++|+|||+++++++|+.+|+|++++|||++||||+||.++|+|||+.|||||||++|++|+. ||+|+
T Consensus 65 ~~~~~t~~P~~~~l~at~d~~~a~~~g~~~a~el~~~Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~ 144 (299)
T PF00933_consen 65 LGGGFTAFPSPMALAATWDPELAYEVGRIIARELRALGINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGL 144 (299)
T ss_dssp TTTTS---S-HHHHHHHTCHHHHHHHHHHHHHHHHHTT-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHH
T ss_pred CCCcCccCcchhhhhhhccchHHHHHHHHHHHHHHHhhhccccccceeeeeeccccccccccchhHHHHHHHHHHHhccc
Confidence 65 4999999999999999999999999999999999999999999999999999999999999999999996 99999
Q ss_pred cCCCCCCCCCCCccccCCCceeeeecccccCCCCCCCCCCCCccCCHhHHHhhccHHHHHHH-HcCcceEEEeccccCCc
Q 006872 204 QGDLPANSKKGVPFVAGKKKVAACAKHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNSI-SKGVATVMVSYSSWNGK 282 (628)
Q Consensus 204 q~~~~~~~~~~~~~~~g~~gv~~~~KHFpG~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i-~~g~~~vM~sy~~~~g~ 282 (628)
| ++||++|+||||||+..+.+.+.....++.++|++.||+||+.+| ++|+.+||+||+.+++.
T Consensus 145 q----------------~~gv~~~~KHFpG~~~~d~~~~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~ 208 (299)
T PF00933_consen 145 Q----------------GAGVAATAKHFPGHGAQDSHRDLPSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGT 208 (299)
T ss_dssp H----------------CTTSEEEEEEETTGGCSCTTTTTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTE
T ss_pred c----------------cccccccccccccccccccccccceecCCcccccchhcccchhcccccccceeeeeccccCCc
Confidence 9 589999999999995544433333344699999999999999999 78999999999999999
Q ss_pred cccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCeeccCCChHHHHHHHHHHHHcCCCCH
Q 006872 283 KMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVKKNIIPM 362 (628)
Q Consensus 283 pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~ 362 (628)
|+|+|+++++++||++|||+|+|||||+.|+++...+. ..+++++|++||+||+|+|.+....++.|.++|++|.+++
T Consensus 209 pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~--~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~ 286 (299)
T PF00933_consen 209 PASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNYS--IEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISE 286 (299)
T ss_dssp EGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCTT--HHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGH
T ss_pred cchhhhccchhhCcCcccCCCeEecccchHHHHHhccc--cchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCH
Confidence 99999999999999999999999999999999998665 4788999999999999999988777899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006872 363 SRIDDAVKRILRV 375 (628)
Q Consensus 363 ~~id~av~Ril~~ 375 (628)
+|||+||+|||++
T Consensus 287 ~~ld~av~RIl~~ 299 (299)
T PF00933_consen 287 ERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=1.6e-60 Score=497.75 Aligned_cols=279 Identities=21% Similarity=0.297 Sum_probs=246.1
Q ss_pred chHHHhhcccceEEeCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCCCcEEEecCCCCcccC--CCCcCCCcccccccc
Q 006872 64 TPDVMKQFFIGSVLSGGGSVPAPKATAETWVNMVNGLQKGALSTRLGIPMIYGIDAVHGHNNV--YKATIFPHNVGLGVT 141 (628)
Q Consensus 64 ~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~~giP~~i~~D~e~G~~~~--~~~t~fP~~~~laat 141 (628)
..++++++++||||+|+ +|..+++|++++++.+|+.+ ++|++|++|||||.++| .++|.||+++++|++
T Consensus 17 ~~~~i~~~~~gGvilf~----~n~~~~~q~~~l~~~l~~~~-----~~plli~iD~EgG~v~rl~~~~t~~P~~~~laat 87 (337)
T PRK05337 17 ERERLQHPLVGGVILFA----RNFEDPAQLRELTAAIRAAV-----RPPLLIAVDQEGGRVQRFREGFTRLPAMQSFGAL 87 (337)
T ss_pred HHHHHHccCceEEEEEC----CCCCCHHHHHHHHHHHHHhc-----CCCCEEEEecCCCEeeecCCCCCCCCCHHHHHhh
Confidence 34678999999999995 56778999999999999765 79999999999999876 467899999999999
Q ss_pred CC------HHHHHHHHHHHHHHHHHcCCCeeecccccccCCCCCCccccccCCCHHHHHHHHh-ccccccCCCCCCCCCC
Q 006872 142 RD------PALVKKIGDATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQAMTE-IIPGLQGDLPANSKKG 214 (628)
Q Consensus 142 ~d------~~la~~~g~~~a~e~~a~Gin~~~aPv~Dv~~~p~~gr~~rsfgeDp~lv~~~a~-~v~G~q~~~~~~~~~~ 214 (628)
|| +++++++|+.+|+|+|++|||++||||+||.+++.| ++.|||||||++|++|+. |++|+|
T Consensus 88 ~d~~~~~~~~la~~~g~~~a~Elra~Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq---------- 156 (337)
T PRK05337 88 WDRDPLEALKLAEEAGWLMAAELRACGIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMH---------- 156 (337)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhCCCccccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHH----------
Confidence 99 899999999999999999999999999999843332 458999999999999997 999999
Q ss_pred CccccCCCceeeeecccccCCCCCCCCCCCCccC--CHhHHHhhccHHHHHHHHcCcceEEEe---ccccCCccccCCHH
Q 006872 215 VPFVAGKKKVAACAKHYVGDGGTTKGINENNTVI--NLNGLLSIHMPAYYNSISKGVATVMVS---YSSWNGKKMHANHE 289 (628)
Q Consensus 215 ~~~~~g~~gv~~~~KHFpG~g~~~~~~~~~~~~~--~~~~l~~~~l~pF~~~i~~g~~~vM~s---y~~~~g~pa~~s~~ 289 (628)
+.||++|+|||||||.+..|+|...+.. +.++|++.||+||+.+|++|+.+||++ |+.+|+.|+|+|++
T Consensus 157 ------~~gv~~~~KHFpG~G~~~~dsh~~~~~~~~~~~el~~~~l~PF~~ai~~g~~~vM~aHv~y~~id~~Pa~~S~~ 230 (337)
T PRK05337 157 ------AAGMAATGKHFPGHGAVEADSHVETPVDERPLEEIRAEDMAPFRALIAAGLDAVMPAHVIYPQVDPRPAGFSRY 230 (337)
T ss_pred ------HCCCEEEecccCCCCCCcCCCCCCCCCCCCCHHHHHhhhHHHHHHHHhcCCCEEEeCceeccCCCCCCCcCCHH
Confidence 5899999999999999999998876654 668999999999999999999999999 77889999999999
Q ss_pred HHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCeeccCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q 006872 290 LVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMVPNNYKEFIDDLTDQVKKNIIPMSRIDDAV 369 (628)
Q Consensus 290 ~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~id~av 369 (628)
+|+++||+||||+|+|||||++|.++... .++.+++++|++|||||+|+|++.+ ....+.+++.+ +.+.
T Consensus 231 ~l~~lLR~elGF~G~ViSD~l~m~a~~~~--~~~~~~~~~al~AG~Dl~l~~~~~~-~~~~~~~~l~~--------~~~~ 299 (337)
T PRK05337 231 WLQDILRQELGFDGVIFSDDLSMEGAAVA--GDYAERAQAALDAGCDMVLVCNNRD-GAVSVLDNLSP--------PISA 299 (337)
T ss_pred HHHHHHHHhcCCCEEEEecchhhhhhhhc--CCHHHHHHHHHHcCCCEEeeCCCHH-HHHHHHHHHHh--------hccH
Confidence 99999999999999999999999886543 2456788999999999999998764 45667777755 7778
Q ss_pred HHHHHHHHHc
Q 006872 370 KRILRVKFVM 379 (628)
Q Consensus 370 ~Ril~~k~~~ 379 (628)
+|+++++.+.
T Consensus 300 ~~~~~~~~~~ 309 (337)
T PRK05337 300 ERLTRLYGRG 309 (337)
T ss_pred HHHHHHhccc
Confidence 8898888763
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=2e-35 Score=295.73 Aligned_cols=201 Identities=35% Similarity=0.524 Sum_probs=142.3
Q ss_pred hhhhccCCCCCCCcccCCCCCCeEEEEcccCCccCcccCCcEEeecCCCCCCCCCccCHHHHHhcccCCCceEEecCC--
Q 006872 412 LVLLKNGEAADKPLLPLPKKASKILVAGSHADNLGYQCGGWTITWQGLGGNDLTAGSTILHAVSNTVDPTTQVVFNEN-- 489 (628)
Q Consensus 412 ivLLKN~~~~e~~~LPL~~~~~ki~vig~~a~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~l~~~~~~~~~~~~~~~-- 489 (628)
|||||| ++++|||+++.+||+|+|++++....+++||+.. ......++++++++++...........
T Consensus 1 ivLLKN----~~~~LPL~~~~~~v~viG~~~~~~~~~g~g~~~~-------~~~~~~t~~~~l~~~~~~~~~~~~~~~~~ 69 (227)
T PF01915_consen 1 IVLLKN----EGNLLPLKPDKKKVAVIGPNADNPVAQGGGSGNV-------NPGYGVTPLDALKQRFGNAGVVVPEGGDA 69 (227)
T ss_dssp -EEEEE----GCG--SB-TTSTEEEEESTTTTSHHHCHBSTTSS-------TCSTHBHHHHHHHHHHHTTSEEEECCCCC
T ss_pred CEEEEe----CCCCCCCCCCCCEEEEEcCccccccccCCccccc-------CccccccHHhhhccccCCCceEEeeeccc
Confidence 799999 7789999986449999999999865555554211 223567899999988765443332111
Q ss_pred -CC-----hhHHhhcCCceEEEEEeccCCccc-------cCCCccccCChhhHHHHHHHhc-CCCeEEEEECCccccccc
Q 006872 490 -PD-----ANFVKSNKFSYAIVVVGEQPYAET-------YGDSLNLTISEPGLSTITNVCG-AVKCVVVVISGRPVVIQP 555 (628)
Q Consensus 490 -~~-----~~~~~~~~~D~~iv~vg~~~~~e~-------~gd~~~l~l~~~~~~li~~v~~-~~~~VvV~~~g~P~~l~~ 555 (628)
.+ .....++++|++|++++.. +.|. +.|+.++.+|..|.++|+++++ ++|+|||+++++||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~aD~vIv~~~~~-~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~~~~Ivvv~~~~P~~l~~ 148 (227)
T PF01915_consen 70 VDDDEGIDEAVAAAKEADVVIVFVGRP-SGEGNDNNTEGESDRSDLALPANQQELIKAVAAAGKKVIVVVNSGNPYDLDP 148 (227)
T ss_dssp CCCCSCHHHHHHHHHCSSEEEEEEETT-SBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHHSCEEEEEE-SSGGCGHC
T ss_pred cccccchHHHHHHhhcCCEEEEecccc-ccccccccccccCCcccccchhhHHHHHHHHHHhcCCeEEEEecCCccccHH
Confidence 11 1122346799999999932 2222 2578899999999999999988 689999999999999988
Q ss_pred cccCcceeEEccCCCch-hHHHHHHHhcCCCCCccccccccccCCCCCCCCCC----CCC-----CccccCCCCCCCCC
Q 006872 556 YLAQIDALVAAWLPGTE-GQGVADVLFGDYGFTGKLARTWFKTVDQLPMNVGD----PHY-----DPLFPFGFGLTTKP 624 (628)
Q Consensus 556 ~~~~v~ail~a~~~g~~-g~a~advL~G~~~PsGkLPvt~p~~~~~~p~~~g~----~~~-----~~~~pFG~GLsYt~ 624 (628)
|.++++|||++|++|++ ++|+||||||++||+||||+|||++.+++|.++.| +.| +++||||||||||.
T Consensus 149 ~~~~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~fG~GLsyt~ 227 (227)
T PF01915_consen 149 WEDNVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTIPKSMEDIPAYYNYGMYGRTYDYDSGPPLYPFGYGLSYTY 227 (227)
T ss_dssp CHHC-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-BESSGGGTTTTTTTS-THCCHHHHTTSESB-TT--B-TT-
T ss_pred HHhhhceEeeccccchHHHHHHHHHHcCCCCCCCCcceeccCChhhCCCcccccccCcccccCCCCccCcCCCCCEeeC
Confidence 88899999999999999 99999999999999999999999999999987543 333 69999999999984
No 7
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=80.82 E-value=6.7 Score=38.97 Aligned_cols=90 Identities=16% Similarity=0.035 Sum_probs=58.2
Q ss_pred cHHHHHHHHcCcceEEEeccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCe
Q 006872 258 MPAYYNSISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDM 337 (628)
Q Consensus 258 l~pF~~~i~~g~~~vM~sy~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~ 337 (628)
+.-.+++.+.|+.+||.--.-|..----.++..| .++|++. +--||-|.+- +. ...+.+|++-|+|-
T Consensus 134 ~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l-~~i~~~~--~vPvIvDAGi-G~---------pSdaa~AMElG~da 200 (247)
T PF05690_consen 134 PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNL-RIIIERA--DVPVIVDAGI-GT---------PSDAAQAMELGADA 200 (247)
T ss_dssp HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHH-HHHHHHG--SSSBEEES----S---------HHHHHHHHHTT-SE
T ss_pred HHHHHHHHHCCCCEEEecccccccCcCCCCHHHH-HHHHHhc--CCcEEEeCCC-CC---------HHHHHHHHHcCCce
Confidence 3456788899999999965444221223466666 6788888 5567777742 11 23467999999999
Q ss_pred eccC------CChHHHHHHHHHHHHcCCC
Q 006872 338 VMVP------NNYKEFIDDLTDQVKKNII 360 (628)
Q Consensus 338 ~l~~------~~~~~~~~~l~~av~~g~i 360 (628)
+|+. .++..+..++..||+.|++
T Consensus 201 VLvNTAiA~A~dPv~MA~Af~~AV~AGR~ 229 (247)
T PF05690_consen 201 VLVNTAIAKAKDPVAMARAFKLAVEAGRL 229 (247)
T ss_dssp EEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred eehhhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 9974 3566677788888877753
No 8
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=78.29 E-value=9.1 Score=38.50 Aligned_cols=90 Identities=18% Similarity=0.057 Sum_probs=60.9
Q ss_pred cHHHHHHHHcCcceEEEeccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCe
Q 006872 258 MPAYYNSISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDM 337 (628)
Q Consensus 258 l~pF~~~i~~g~~~vM~sy~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~ 337 (628)
+.-.+++.+.|+.+||.--.-|..----.++..| .+++++.. =.|+-|.+ |.. .+.+.+|++-|+|=
T Consensus 148 ~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l-~~i~e~~~--vpVivdAG----Igt------~sDa~~AmElGaDg 214 (267)
T CHL00162 148 PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNL-QIIIENAK--IPVIIDAG----IGT------PSEASQAMELGASG 214 (267)
T ss_pred HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHH-HHHHHcCC--CcEEEeCC----cCC------HHHHHHHHHcCCCE
Confidence 3456788899999999954433211112466766 67777754 55777744 222 45678999999999
Q ss_pred eccC------CChHHHHHHHHHHHHcCCC
Q 006872 338 VMVP------NNYKEFIDDLTDQVKKNII 360 (628)
Q Consensus 338 ~l~~------~~~~~~~~~l~~av~~g~i 360 (628)
+++. .++..+..++..||+.|++
T Consensus 215 VL~nSaIakA~dP~~mA~a~~~AV~AGR~ 243 (267)
T CHL00162 215 VLLNTAVAQAKNPEQMAKAMKLAVQAGRL 243 (267)
T ss_pred EeecceeecCCCHHHHHHHHHHHHHHHHH
Confidence 9864 3566777888888887754
No 9
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=68.73 E-value=16 Score=36.17 Aligned_cols=87 Identities=14% Similarity=0.008 Sum_probs=58.8
Q ss_pred HHHHHHcCcceEEEeccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCeecc
Q 006872 261 YYNSISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMV 340 (628)
Q Consensus 261 F~~~i~~g~~~vM~sy~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~ 340 (628)
-+++.+.|+.+||.--.-|..----.++..| .+++++. +=-||-|.+-- . ...+..+++-|+|-+|+
T Consensus 144 arrLee~GcaavMPl~aPIGSg~G~~n~~~l-~iiie~a--~VPviVDAGiG-~---------pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 144 ARRLEEAGCAAVMPLGAPIGSGLGLQNPYNL-EIIIEEA--DVPVIVDAGIG-T---------PSDAAQAMELGADAVLL 210 (262)
T ss_pred HHHHHhcCceEeccccccccCCcCcCCHHHH-HHHHHhC--CCCEEEeCCCC-C---------hhHHHHHHhcccceeeh
Confidence 3566778999999954444221123466666 6888887 77788887631 0 22357999999999987
Q ss_pred CC------ChHHHHHHHHHHHHcCCC
Q 006872 341 PN------NYKEFIDDLTDQVKKNII 360 (628)
Q Consensus 341 ~~------~~~~~~~~l~~av~~g~i 360 (628)
.. ++..+.+++.-||+.|++
T Consensus 211 NTAiA~A~DPv~MA~Af~~Av~AGrl 236 (262)
T COG2022 211 NTAIARAKDPVAMARAFALAVEAGRL 236 (262)
T ss_pred hhHhhccCChHHHHHHHHHHHHHhHH
Confidence 43 455666777778877764
No 10
>PRK00208 thiG thiazole synthase; Reviewed
Probab=65.84 E-value=25 Score=35.43 Aligned_cols=84 Identities=17% Similarity=0.092 Sum_probs=53.9
Q ss_pred HHHHHHcCcceEEE--eccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCee
Q 006872 261 YYNSISKGVATVMV--SYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMV 338 (628)
Q Consensus 261 F~~~i~~g~~~vM~--sy~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 338 (628)
-+++.+.|++.||+ +-+. .|.. -.++.++ ..+|++. +--||-|.. +.. .+.+.++++.|+|-+
T Consensus 137 ak~l~~~G~~~vmPlg~pIG-sg~g-i~~~~~i-~~i~e~~--~vpVIveaG----I~t------peda~~AmelGAdgV 201 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIG-SGLG-LLNPYNL-RIIIEQA--DVPVIVDAG----IGT------PSDAAQAMELGADAV 201 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCCC-CCCHHHH-HHHHHhc--CCeEEEeCC----CCC------HHHHHHHHHcCCCEE
Confidence 35666779999999 5444 2332 2246666 5666663 445676643 222 456789999999999
Q ss_pred ccCC------ChHHHHHHHHHHHHcCC
Q 006872 339 MVPN------NYKEFIDDLTDQVKKNI 359 (628)
Q Consensus 339 l~~~------~~~~~~~~l~~av~~g~ 359 (628)
++.+ ++.....++..+++.|+
T Consensus 202 lV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 202 LLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred EEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 8753 35555667777776664
No 11
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=61.09 E-value=30 Score=36.31 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=58.6
Q ss_pred HHHHHHcCcceEEE-eccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCeec
Q 006872 261 YYNSISKGVATVMV-SYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVM 339 (628)
Q Consensus 261 F~~~i~~g~~~vM~-sy~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l 339 (628)
.+++.+.|+.+||. .-..=.|.+.+ ++..|..+. ++ .+-.|+-|.+- .. .+.+.+|++-|+|=+|
T Consensus 211 a~~l~~~g~~avmPl~~pIGsg~gv~-~p~~i~~~~-e~--~~vpVivdAGI----g~------~sda~~AmelGadgVL 276 (326)
T PRK11840 211 AKRLEDAGAVAVMPLGAPIGSGLGIQ-NPYTIRLIV-EG--ATVPVLVDAGV----GT------ASDAAVAMELGCDGVL 276 (326)
T ss_pred HHHHHhcCCEEEeeccccccCCCCCC-CHHHHHHHH-Hc--CCCcEEEeCCC----CC------HHHHHHHHHcCCCEEE
Confidence 45667779999999 33222555555 888886554 44 56667777653 11 4567899999999998
Q ss_pred cCC------ChHHHHHHHHHHHHcCCC
Q 006872 340 VPN------NYKEFIDDLTDQVKKNII 360 (628)
Q Consensus 340 ~~~------~~~~~~~~l~~av~~g~i 360 (628)
+.+ ++..+.+++..||+.|++
T Consensus 277 ~nSaIa~a~dPv~Ma~A~~~av~aGr~ 303 (326)
T PRK11840 277 MNTAIAEAKNPVLMARAMKLAVEAGRL 303 (326)
T ss_pred EcceeccCCCHHHHHHHHHHHHHHHHH
Confidence 743 555677788888877753
No 12
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=56.33 E-value=45 Score=33.54 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=55.3
Q ss_pred HHHHHHcCcceEEE--eccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCee
Q 006872 261 YYNSISKGVATVMV--SYSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMV 338 (628)
Q Consensus 261 F~~~i~~g~~~vM~--sy~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 338 (628)
-+++.+.|+..||+ +-+. .|.. -.++.+|. .+|++ .+--||-|.. +.. .+.+.+|++.|+|-+
T Consensus 137 ar~l~~~G~~~vmPlg~pIG-sg~G-i~~~~~I~-~I~e~--~~vpVI~egG----I~t------peda~~AmelGAdgV 201 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIG-SGQG-LLNPYNLR-IIIER--ADVPVIVDAG----IGT------PSDAAQAMELGADAV 201 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCCC-CCCHHHHH-HHHHh--CCCcEEEeCC----CCC------HHHHHHHHHcCCCEE
Confidence 35666789999999 5443 2322 23477775 66766 4555776643 222 456789999999999
Q ss_pred ccCC------ChHHHHHHHHHHHHcCCC
Q 006872 339 MVPN------NYKEFIDDLTDQVKKNII 360 (628)
Q Consensus 339 l~~~------~~~~~~~~l~~av~~g~i 360 (628)
++.+ ++.....++..+++.|+.
T Consensus 202 lV~SAIt~a~dP~~ma~af~~Av~aGr~ 229 (248)
T cd04728 202 LLNTAIAKAKDPVAMARAFKLAVEAGRL 229 (248)
T ss_pred EEChHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 8753 355566677777776653
No 13
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=51.70 E-value=13 Score=24.54 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=13.2
Q ss_pred HHHHHHHcCcceEEEec
Q 006872 260 AYYNSISKGVATVMVSY 276 (628)
Q Consensus 260 pF~~~i~~g~~~vM~sy 276 (628)
-++.++++|+++||+-|
T Consensus 12 ~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT-SEEEES-
T ss_pred HHHHHHHcCCCEeeCCC
Confidence 46889999999999966
No 14
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=50.75 E-value=36 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Q 006872 350 DLTDQVKKNIIPMSRIDDAVKRILRVKFVMG 380 (628)
Q Consensus 350 ~l~~av~~g~i~~~~id~av~Ril~~k~~~g 380 (628)
.....++...-+.+.|++.|.++|.+|..+|
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 3455567778889999999999999999987
No 15
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=39.97 E-value=73 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 006872 347 FIDDLTDQVKKNIIPMSRIDDAVKRIL 373 (628)
Q Consensus 347 ~~~~l~~av~~g~i~~~~id~av~Ril 373 (628)
-+..|.+..++|.||++..++.-++||
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 457788999999999999999988887
No 16
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=39.59 E-value=5.7e+02 Score=28.34 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=55.1
Q ss_pred HHHcCcceEEEeccccCCcc-----ccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcC-CCe
Q 006872 264 SISKGVATVMVSYSSWNGKK-----MHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAG-IDM 337 (628)
Q Consensus 264 ~i~~g~~~vM~sy~~~~g~p-----a~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG-~D~ 337 (628)
.|+.+...+|.+.+++.|+. ++-++-+++.+|+.=+... .-+...++ + ..+|+..| .|+
T Consensus 60 ~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~G-aR~AepGE-----------F---s~RAFLNgK~DL 124 (454)
T COG0486 60 IIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLG-ARLAEPGE-----------F---SKRAFLNGKLDL 124 (454)
T ss_pred EeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcC-CeecCCCc-----------c---hHHHHhcCCccH
Confidence 34556667788888998874 5678877777776433322 22211111 1 23444333 343
Q ss_pred ec--------cCCChHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHcC-CCCCC
Q 006872 338 VM--------VPNNYKEFIDDLTDQVK--KNIIPMSRIDDAVKRILRVKFVMG-LFDSP 385 (628)
Q Consensus 338 ~l--------~~~~~~~~~~~l~~av~--~g~i~~~~id~av~Ril~~k~~~g-l~~~p 385 (628)
.- .+.+. .....|++ +|.++ ++|++-.++++.+...+- ..|.|
T Consensus 125 tqAEai~dLI~A~te----~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~vEa~IDfp 178 (454)
T COG0486 125 TQAEAIADLIDAKTE----QAARIALRQLQGALS-QLINELREALLELLAQVEANIDFP 178 (454)
T ss_pred HHHHHHHHHHhCCCH----HHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHheEeCCCC
Confidence 21 01111 12222332 67774 578888889998887763 33444
No 17
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=36.84 E-value=5.2e+02 Score=27.12 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=82.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCCeeec-ccccccCCCCCCccccccCCCHHHHHHHHh-ccccccCCCCCCCCCCCccc
Q 006872 141 TRDPALVKKIGDATALEVRATGIPYVFA-PCIAVCRDPRWGRCYESYSEDHKIVQAMTE-IIPGLQGDLPANSKKGVPFV 218 (628)
Q Consensus 141 t~d~~la~~~g~~~a~e~~a~Gin~~~a-Pv~Dv~~~p~~gr~~rsfgeDp~lv~~~a~-~v~G~q~~~~~~~~~~~~~~ 218 (628)
..|++...+.++.. .+...-+|++|++ |+--+.+. | ..-.+..||+++.++.. +.+...
T Consensus 73 g~~~~~~~~aa~~~-~~~g~d~IdlN~gCP~~~v~~~---g-~Gs~ll~~p~~~~eiv~av~~a~d-------------- 133 (321)
T PRK10415 73 GSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRK---L-AGSALLQYPDLVKSILTEVVNAVD-------------- 133 (321)
T ss_pred CCCHHHHHHHHHHH-HHCCCCEEEEeCCCCHHHHcCC---C-cccHHhcCHHHHHHHHHHHHHhcC--------------
Confidence 35887776666543 4444557788888 54322211 1 13457889999999875 544331
Q ss_pred cCCCceeeeecccccCCCCCCCCCCCCccCCHhHHHhhccHHH-HHHHHcCcceEEEecccc-CCccc-cCCHHHHHHHH
Q 006872 219 AGKKKVAACAKHYVGDGGTTKGINENNTVINLNGLLSIHMPAY-YNSISKGVATVMVSYSSW-NGKKM-HANHELVTGFL 295 (628)
Q Consensus 219 ~g~~gv~~~~KHFpG~g~~~~~~~~~~~~~~~~~l~~~~l~pF-~~~i~~g~~~vM~sy~~~-~g~pa-~~s~~~l~~lL 295 (628)
+--++|.=.|.... .. +..-| +.+.++|++.|-+ |.+. .+... ..+..++. -+
T Consensus 134 -----~pv~vKiR~G~~~~------------~~-----~~~~~a~~le~~G~d~i~v-h~rt~~~~~~G~a~~~~i~-~i 189 (321)
T PRK10415 134 -----VPVTLKIRTGWAPE------------HR-----NCVEIAQLAEDCGIQALTI-HGRTRACLFNGEAEYDSIR-AV 189 (321)
T ss_pred -----CceEEEEEccccCC------------cc-----hHHHHHHHHHHhCCCEEEE-ecCccccccCCCcChHHHH-HH
Confidence 22455655443210 00 11122 3345678888744 3322 11111 12334443 33
Q ss_pred HhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHH-cCCCeeccCC----ChHHHHHHHHHHHHcCC
Q 006872 296 KNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVS-AGIDMVMVPN----NYKEFIDDLTDQVKKNI 359 (628)
Q Consensus 296 R~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~-AG~D~~l~~~----~~~~~~~~l~~av~~g~ 359 (628)
++..+.. || ..+++.+ .+.+.++++ .|+|.+|+.. ++ ..+..+.+.++.|.
T Consensus 190 k~~~~iP--VI----~nGgI~s------~~da~~~l~~~gadgVmiGR~~l~nP-~if~~~~~~~~~~~ 245 (321)
T PRK10415 190 KQKVSIP--VI----ANGDITD------PLKARAVLDYTGADALMIGRAAQGRP-WIFREIQHYLDTGE 245 (321)
T ss_pred HHhcCCc--EE----EeCCCCC------HHHHHHHHhccCCCEEEEChHhhcCC-hHHHHHHHHHhCCC
Confidence 4444322 11 1222222 344567776 7999999863 22 34556666666664
No 18
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=34.55 E-value=68 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=23.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCC
Q 006872 357 KNIIPMSRIDDAVKRILRVKFVMGLF 382 (628)
Q Consensus 357 ~g~i~~~~id~av~Ril~~k~~~gl~ 382 (628)
.|.|+.+.+-+++.|++..+.+.|-.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999998865
No 19
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=33.20 E-value=92 Score=34.88 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=39.6
Q ss_pred HcCcceEEEe-ccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCC-CCCChhHHHHHHHHcCCCeecc
Q 006872 266 SKGVATVMVS-YSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAP-PHANYSYSVQAGVSAGIDMVMV 340 (628)
Q Consensus 266 ~~g~~~vM~s-y~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~-~~~~~~~~~~~al~AG~D~~l~ 340 (628)
+.|+..||+. |.-+-. ....... +=|++=+||+|.|+||.++-+-..-. ...+-++.+.---.-|.|+.|.
T Consensus 49 ~~g~~~il~NtYhl~~r---~~~~~~~-gGlh~f~~w~g~ilTDSGgfQv~s~g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 49 EFGAEILITNSYIIYRS---LREKALE-KGLHKLLGFDGPIMTDSGSYQLLVYGDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HhCCCEEEeeHHHHHhh---hhHHHHh-CCHHHHhCCCCCeEeccCCcEEEEcCCccCCHHHHHHHHHHhCCCEEeE
Confidence 4688888885 221111 0000111 23667789999999999875543321 1122233333334689999985
No 20
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=30.89 E-value=59 Score=34.98 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=14.0
Q ss_pred HHhhcCCCceeecchhh
Q 006872 295 LKNKLKFRGFVISDWEG 311 (628)
Q Consensus 295 LR~elgf~G~visD~~~ 311 (628)
|.+=+||+|.|+||.++
T Consensus 76 lH~fm~w~gpilTDSGg 92 (372)
T PRK01008 76 LHQFIGRNAPIITDSGG 92 (372)
T ss_pred HHHHhCCCCcccccCcc
Confidence 45678999999999764
No 21
>COG1647 Esterase/lipase [General function prediction only]
Probab=30.87 E-value=1.5e+02 Score=29.51 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=62.3
Q ss_pred ccCCCHHHHHHHHhccccccCCCCCCCCCCCccccCCCceeeeecccccCCCCCCCCCCCCccCCHhHHHhhccHHHHHH
Q 006872 185 SYSEDHKIVQAMTEIIPGLQGDLPANSKKGVPFVAGKKKVAACAKHYVGDGGTTKGINENNTVINLNGLLSIHMPAYYNS 264 (628)
Q Consensus 185 sfgeDp~lv~~~a~~v~G~q~~~~~~~~~~~~~~~g~~gv~~~~KHFpG~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~ 264 (628)
.|--.|.-|-.+|.+. | ++|--+.+=-|||||..-.+ .-..++++|.+.-+..|+.+
T Consensus 23 GFTGt~~Dvr~Lgr~L---~----------------e~GyTv~aP~ypGHG~~~e~----fl~t~~~DW~~~v~d~Y~~L 79 (243)
T COG1647 23 GFTGTPRDVRMLGRYL---N----------------ENGYTVYAPRYPGHGTLPED----FLKTTPRDWWEDVEDGYRDL 79 (243)
T ss_pred ccCCCcHHHHHHHHHH---H----------------HCCceEecCCCCCCCCCHHH----HhcCCHHHHHHHHHHHHHHH
Confidence 5666777777776533 2 45777888899999964321 22347899999999999999
Q ss_pred HHcCcceEEEeccccCCccccCCHHHHHHHHHhhcCCCcee
Q 006872 265 ISKGVATVMVSYSSWNGKKMHANHELVTGFLKNKLKFRGFV 305 (628)
Q Consensus 265 i~~g~~~vM~sy~~~~g~pa~~s~~~l~~lLR~elgf~G~v 305 (628)
.++|-+.|-+.=.+..| +++-.|-..+--+|+|
T Consensus 80 ~~~gy~eI~v~GlSmGG--------v~alkla~~~p~K~iv 112 (243)
T COG1647 80 KEAGYDEIAVVGLSMGG--------VFALKLAYHYPPKKIV 112 (243)
T ss_pred HHcCCCeEEEEeecchh--------HHHHHHHhhCCcccee
Confidence 99998888776666665 3444555555555554
No 22
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=28.60 E-value=99 Score=23.28 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 006872 345 KEFIDDLTDQVKKNIIPMSRIDDAVKRILRVKFV 378 (628)
Q Consensus 345 ~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~ 378 (628)
+..++.|..++.+|+|+.+..++-+.+++..+.+
T Consensus 9 ~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~ 42 (53)
T PF08044_consen 9 ERAVDLLRAAFAEGRLSLDEFDERLDAAYAARTR 42 (53)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcH
Confidence 4577899999999999999999999998887654
No 23
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.21 E-value=1.8e+02 Score=29.86 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=26.4
Q ss_pred HHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHHHcCCCeeccCC
Q 006872 293 GFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGVSAGIDMVMVPN 342 (628)
Q Consensus 293 ~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~ 342 (628)
.-+|+...|.=.|+.+.-.. +.+..|+++|+|++|..+
T Consensus 173 ~~~k~~~p~~~~I~VEv~tl------------eea~~A~~~GaDiI~LDn 210 (273)
T PRK05848 173 QHARKNIPFTAKIEIECESL------------EEAKNAMNAGADIVMCDN 210 (273)
T ss_pred HHHHHhCCCCceEEEEeCCH------------HHHHHHHHcCCCEEEECC
Confidence 34578888755566555432 346789999999998643
No 24
>PLN03007 UDP-glucosyltransferase family protein
Probab=27.99 E-value=1.1e+02 Score=34.06 Aligned_cols=73 Identities=26% Similarity=0.435 Sum_probs=46.2
Q ss_pred CCceeecchhhhhhhcCCCCC------ChhHHHHHHHHcCCCeeccCCChHHHHHH--HHHH------H--------HcC
Q 006872 301 FRGFVISDWEGIDRITAPPHA------NYSYSVQAGVSAGIDMVMVPNNYKEFIDD--LTDQ------V--------KKN 358 (628)
Q Consensus 301 f~G~visD~~~m~~~~~~~~~------~~~~~~~~al~AG~D~~l~~~~~~~~~~~--l~~a------v--------~~g 358 (628)
=+|+++.+|.-...+-.+... .--.++.+|+.+|+=|+++|...+....+ +.+. + +.+
T Consensus 344 ~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~ 423 (482)
T PLN03007 344 GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGD 423 (482)
T ss_pred cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccC
Confidence 368999998755444332110 00136789999999999988644433222 1111 1 335
Q ss_pred CCCHHHHHHHHHHHH
Q 006872 359 IIPMSRIDDAVKRIL 373 (628)
Q Consensus 359 ~i~~~~id~av~Ril 373 (628)
.++.++|.+++++++
T Consensus 424 ~~~~~~l~~av~~~m 438 (482)
T PLN03007 424 FISREKVEKAVREVI 438 (482)
T ss_pred cccHHHHHHHHHHHh
Confidence 688999999999987
No 25
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.84 E-value=1e+02 Score=23.84 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHhhCCHHHHHh
Q 006872 33 QPLGARIRDLMSRMTLAEKIG 53 (628)
Q Consensus 33 ~~~~~rv~~ll~~mtleeKig 53 (628)
+++|+|...|=.++.-.|+-.
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra 48 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRA 48 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 568888888877776665543
No 26
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=26.71 E-value=55 Score=32.45 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHHHcCcceEEEeccccCCccc-cCCHHHHHHHHHhhcCCCceeecchhhh
Q 006872 260 AYYNSISKGVATVMVSYSSWNGKKM-HANHELVTGFLKNKLKFRGFVISDWEGI 312 (628)
Q Consensus 260 pF~~~i~~g~~~vM~sy~~~~g~pa-~~s~~~l~~lLR~elgf~G~visD~~~m 312 (628)
-|+.|++..+.+||++||--.|.|. +.....+|.-|.+-+++-|+.+=|-.-+
T Consensus 157 I~k~Al~~nAaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 157 IFKEALKYNAAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred HHHHHHHhcchhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 4789999999999999998777654 4456677889999999988888776544
No 27
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=25.89 E-value=59 Score=21.23 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHhhhccc
Q 006872 5 SVPMLGFLLLCFLAAVTE 22 (628)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (628)
-+.++|+|++|-++++.+
T Consensus 9 ~lAi~c~LL~s~Ls~VkA 26 (30)
T PF11466_consen 9 WLAIVCVLLFSHLSSVKA 26 (30)
T ss_dssp HHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHHHhhHHHh
Confidence 467889999999988764
No 28
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=25.43 E-value=68 Score=25.14 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=18.1
Q ss_pred CCcchhhHHHHHHHHHhhhccccc
Q 006872 1 MGRFSVPMLGFLLLCFLAAVTEAT 24 (628)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (628)
||.+|+.++.+|.|--+.++|+..
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSda 24 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDA 24 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecC
Confidence 889988888777777777776544
No 29
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=24.67 E-value=1.5e+02 Score=30.09 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhhccCCC-CCcEEEecCCCCcccC--CCCcCCCccccccccCCHHHHHHHHHHHHHHHHHc
Q 006872 85 APKATAETWVNMVNGLQKGALSTRLG-IPMIYGIDAVHGHNNV--YKATIFPHNVGLGVTRDPALVKKIGDATALEVRAT 161 (628)
Q Consensus 85 ~~~~~~~~~~~~~~~lq~~~~~~~~g-iP~~i~~D~e~G~~~~--~~~t~fP~~~~laat~d~~la~~~g~~~a~e~~a~ 161 (628)
-...-|+++.++..-+.....+.... +|++|.+|.|.-.+.. .....| ++.-+|=|...+.+.++++.
T Consensus 151 CPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF-~pkllGLTGT~eqvk~vak~-------- 221 (280)
T KOG2792|consen 151 CPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEF-HPKLLGLTGTTEQVKQVAKK-------- 221 (280)
T ss_pred CCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhc-ChhhhcccCCHHHHHHHHHH--------
Confidence 35568999999888777665444332 4799999999886532 112223 23445667888888887665
Q ss_pred CCCeeecc
Q 006872 162 GIPYVFAP 169 (628)
Q Consensus 162 Gin~~~aP 169 (628)
..+.|++
T Consensus 222 -yRVYfs~ 228 (280)
T KOG2792|consen 222 -YRVYFST 228 (280)
T ss_pred -hEEeecc
Confidence 5666766
No 30
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=23.94 E-value=8.3e+02 Score=25.40 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=29.6
Q ss_pred hHHHHHHH-HcCCCeeccCCCh---HHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHH
Q 006872 324 SYSVQAGV-SAGIDMVMVPNNY---KEFIDDLTDQVKKNII----PMSRIDDAVKRILRV 375 (628)
Q Consensus 324 ~~~~~~al-~AG~D~~l~~~~~---~~~~~~l~~av~~g~i----~~~~id~av~Ril~~ 375 (628)
.+.+.+++ .+|+|.+|++... +.+...+.+.+..|.. +.+++-+-++|.+..
T Consensus 204 ~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 263 (319)
T TIGR00737 204 PEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQL 263 (319)
T ss_pred HHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34567888 6899999986421 2345556666665542 333444445554444
No 31
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=23.53 E-value=1.6e+02 Score=31.21 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=43.5
Q ss_pred HHHHHHcCcceEEEe------cc--ccCCcc-ccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCCCCCChhHHHHHHH
Q 006872 261 YYNSISKGVATVMVS------YS--SWNGKK-MHANHELVTGFLKNKLKFRGFVISDWEGIDRITAPPHANYSYSVQAGV 331 (628)
Q Consensus 261 F~~~i~~g~~~vM~s------y~--~~~g~p-a~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~~~~~~~~~~~~al 331 (628)
.+.+|++|+++|-++ |. .+.|.+ +.++ .+.++-+---+++.-||.|-.-- +...+++||
T Consensus 164 a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqlt--Av~~~a~aa~~~~v~VIaDGGIr----------~~gDI~KAL 231 (343)
T TIGR01305 164 VEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLS--AVIECADAAHGLKGHIISDGGCT----------CPGDVAKAF 231 (343)
T ss_pred HHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHH--HHHHHHHHhccCCCeEEEcCCcC----------chhHHHHHH
Confidence 357899999999877 22 345554 2222 12233333335667788886532 133578999
Q ss_pred HcCCCeeccC
Q 006872 332 SAGIDMVMVP 341 (628)
Q Consensus 332 ~AG~D~~l~~ 341 (628)
.+|+|.+|+.
T Consensus 232 A~GAd~VMlG 241 (343)
T TIGR01305 232 GAGADFVMLG 241 (343)
T ss_pred HcCCCEEEEC
Confidence 9999999976
No 32
>PLN00164 glucosyltransferase; Provisional
Probab=22.92 E-value=1.3e+02 Score=33.62 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=46.7
Q ss_pred cCCCceeecchhhhhhhcC---------CCCCChhHHHHHHHHcCCCeeccCCChHHHHHH--HHHHHH-----------
Q 006872 299 LKFRGFVISDWEGIDRITA---------PPHANYSYSVQAGVSAGIDMVMVPNNYKEFIDD--LTDQVK----------- 356 (628)
Q Consensus 299 lgf~G~visD~~~m~~~~~---------~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~--l~~av~----------- 356 (628)
.+=+|+|+.+|.--..+-. +.+. .++.+|+.+|+=|+.+|...+....+ +.+...
T Consensus 336 ~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~Gw---nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~ 412 (480)
T PLN00164 336 TKGRGLVWPTWAPQKEILAHAAVGGFVTHCGW---NSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKR 412 (480)
T ss_pred hcCCCeEEeecCCHHHHhcCcccCeEEeeccc---chHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecccccc
Confidence 3446899999875443332 2222 36789999999999988654443333 222111
Q ss_pred cCCCCHHHHHHHHHHHH
Q 006872 357 KNIIPMSRIDDAVKRIL 373 (628)
Q Consensus 357 ~g~i~~~~id~av~Ril 373 (628)
++.++.+.|.++++|++
T Consensus 413 ~~~~~~e~l~~av~~vm 429 (480)
T PLN00164 413 DNFVEAAELERAVRSLM 429 (480)
T ss_pred CCcCcHHHHHHHHHHHh
Confidence 23478899999999987
No 33
>PRK12277 50S ribosomal protein L13e; Provisional
Probab=21.53 E-value=44 Score=27.47 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHcCCCeeecccccccCCCC
Q 006872 156 LEVRATGIPYVFAPCIAVCRDPR 178 (628)
Q Consensus 156 ~e~~a~Gin~~~aPv~Dv~~~p~ 178 (628)
+||++.||+..+|+.+.|.-|++
T Consensus 37 ~ELkaaGi~~~~ArtiGI~VD~R 59 (83)
T PRK12277 37 GELEAAGLDIKNARKLGIRVDKR 59 (83)
T ss_pred HHHHHcCCCHHHhcccCeeeccc
Confidence 47899999999999999998876
No 34
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=21.38 E-value=1.5e+02 Score=31.85 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=40.5
Q ss_pred HHhhcCCCceeecchhhhhh--hcCC-----CC-------------CChhHHHHHHH-HcCCCeeccCCChHHHHHHHHH
Q 006872 295 LKNKLKFRGFVISDWEGIDR--ITAP-----PH-------------ANYSYSVQAGV-SAGIDMVMVPNNYKEFIDDLTD 353 (628)
Q Consensus 295 LR~elgf~G~visD~~~m~~--~~~~-----~~-------------~~~~~~~~~al-~AG~D~~l~~~~~~~~~~~l~~ 353 (628)
|++=+||+|.|+||.+.-.- +.+. .+ .+ .+...+.- .-|.|+.|.-.+...
T Consensus 78 Lh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~~~Gv~f~s~~~G~~~~lt-pe~~~~~q~~ig~DI~~~LD~~~~------- 149 (366)
T PRK00112 78 LHKFMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKHFLT-PEKSMEIQYDLGSDIVMAFDECPP------- 149 (366)
T ss_pred HHHHhCCCCceeeccCcceeeeccccccCCCCceEEecCCCCceEEeC-HHHHHHHHHHhCCCEEEECCcCCC-------
Confidence 56778999999999886332 2110 00 11 12233333 579999885422110
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHHHH
Q 006872 354 QVKKNIIPMSRIDDAVKRILRVKFV 378 (628)
Q Consensus 354 av~~g~i~~~~id~av~Ril~~k~~ 378 (628)
-..+.+++.+|+.|-+++-.+
T Consensus 150 ----~~~~~~~~~~sv~rT~rw~~~ 170 (366)
T PRK00112 150 ----YPATYDYAKKSMERTLRWAER 170 (366)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHH
Confidence 123567777777777766433
No 35
>PF15448 NTS_2: N-terminal segments of P. falciparum erythrocyte membrane protein
Probab=21.32 E-value=1.2e+02 Score=21.92 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHhhCCHHHHHhccccc
Q 006872 30 DPKQPLGARIRDLMSRMTLAEKIGQMTQI 58 (628)
Q Consensus 30 ~~~~~~~~rv~~ll~~mtleeKigQl~~~ 58 (628)
|...++..+++..+..-|-+-||-|.+-.
T Consensus 2 dskstia~kieayl~~ks~ds~idq~lka 30 (51)
T PF15448_consen 2 DSKSTIANKIEAYLEAKSNDSKIDQSLKA 30 (51)
T ss_pred cchhhHHHHHHHHHHhhcchhhHHHHhcC
Confidence 45567889999999999999999998743
No 36
>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=91 Score=28.80 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=34.1
Q ss_pred cCCCCcccCCCCcCCCccccccccCCHHHHHHHHHHHHHHHHHcCCCe
Q 006872 118 DAVHGHNNVYKATIFPHNVGLGVTRDPALVKKIGDATALEVRATGIPY 165 (628)
Q Consensus 118 D~e~G~~~~~~~t~fP~~~~laat~d~~la~~~g~~~a~e~~a~Gin~ 165 (628)
-+++|++-.-....+.-...|=.|.|...+..+|+++|+-+...|||.
T Consensus 78 H~~~gvvvSAST~EwaIk~qLYst~dtsA~~niGRVLAqRCLqsGI~f 125 (188)
T KOG3333|consen 78 HQNGGVVVSASTREWAIKKQLYSTRDTSACENIGRVLAQRCLQSGINF 125 (188)
T ss_pred EecCCEEEEecccchHHHHHHhhccchHHHHHHHHHHHHHHHHhCcce
Confidence 345555422222334444556678899999999999999999999995
No 37
>PLN02764 glycosyltransferase family protein
Probab=20.54 E-value=2e+02 Score=31.95 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=46.6
Q ss_pred CCCceeecchhhhhhhcC---------CCCCChhHHHHHHHHcCCCeeccCCChHHHH--HHHHH----HHH-----cCC
Q 006872 300 KFRGFVISDWEGIDRITA---------PPHANYSYSVQAGVSAGIDMVMVPNNYKEFI--DDLTD----QVK-----KNI 359 (628)
Q Consensus 300 gf~G~visD~~~m~~~~~---------~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~--~~l~~----av~-----~g~ 359 (628)
+=+|+|+.+|.-...+-. +.+ -.++.+|+.+|+=|+.+|...+... ..+.+ .+. .+.
T Consensus 315 ~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G---~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~ 391 (453)
T PLN02764 315 KGRGVVWGGWVQQPLILSHPSVGCFVSHCG---FGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGW 391 (453)
T ss_pred ccCCcEEeCCCCHHHHhcCcccCeEEecCC---chHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCc
Confidence 346999999975444433 222 2367899999999999886443322 12222 111 135
Q ss_pred CCHHHHHHHHHHHHH
Q 006872 360 IPMSRIDDAVKRILR 374 (628)
Q Consensus 360 i~~~~id~av~Ril~ 374 (628)
++.+.|.++++|++.
T Consensus 392 ~~~e~i~~av~~vm~ 406 (453)
T PLN02764 392 FSKESLRDAINSVMK 406 (453)
T ss_pred cCHHHHHHHHHHHhc
Confidence 789999999999984
No 38
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=20.11 E-value=2e+02 Score=33.36 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=39.7
Q ss_pred HcCcceEEEe-ccccCCccccCCHHHHHHHHHhhcCCCceeecchhhhhhhcCC-CCCChhHHHHHHHHcCCCeecc
Q 006872 266 SKGVATVMVS-YSSWNGKKMHANHELVTGFLKNKLKFRGFVISDWEGIDRITAP-PHANYSYSVQAGVSAGIDMVMV 340 (628)
Q Consensus 266 ~~g~~~vM~s-y~~~~g~pa~~s~~~l~~lLR~elgf~G~visD~~~m~~~~~~-~~~~~~~~~~~al~AG~D~~l~ 340 (628)
+.|+..||+. |.-+ -.|- .......+=|++=+||+|.|+||.++-+-..-. ...+-++.+.---.-|.|+.|.
T Consensus 46 ~~g~~~il~NtYhl~-~~pg-~~~~~~~gGlH~f~~w~g~ilTDSGgfQv~s~g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 46 KLGFDIVITNSYIIY-KTPE-LREKALEKGIHSLIGFDGPIMTDSGSFQLSVYGDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred HhCCCEEEehhhhhh-hCCc-hhHHHhcCChHHHhCCCCCeEecCCceeeeecCccccCHHHHHHHHHHhCCCEEEE
Confidence 4688888884 3221 1110 011001123567789999999999875544321 1122233333334579999985
Done!