Query 006874
Match_columns 628
No_of_seqs 312 out of 3156
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:14:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe2_A CPR, P450R, NADPH--cyto 100.0 5E-109 2E-113 936.4 62.0 585 6-628 18-618 (618)
2 2bpo_A CPR, P450R, NADPH-cytoc 100.0 3E-105 1E-109 914.7 55.2 590 5-627 48-682 (682)
3 1tll_A Nitric-oxide synthase, 100.0 2E-100 5E-105 875.7 58.0 581 5-628 10-655 (688)
4 3qfs_A CPR, P450R, NADPH--cyto 100.0 1.4E-81 4.9E-86 684.2 44.8 388 227-628 59-458 (458)
5 2qtl_A MSR;, methionine syntha 100.0 1.8E-78 6E-83 673.8 43.7 388 228-628 112-539 (539)
6 4dql_A Bifunctional P-450/NADP 100.0 2.8E-78 9.5E-83 649.8 40.2 375 233-628 10-392 (393)
7 1f20_A Nitric-oxide synthase; 100.0 3.4E-74 1.2E-78 626.7 42.5 386 230-628 30-434 (435)
8 1ddg_A Sulfite reductase (NADP 100.0 1.7E-72 5.9E-77 601.8 41.9 361 228-627 9-374 (374)
9 2bmw_A Ferredoxin--NADP reduct 100.0 2.8E-37 9.6E-42 321.6 29.8 265 230-627 21-304 (304)
10 3vo2_A Putative uncharacterize 100.0 4.8E-37 1.6E-41 320.8 29.9 211 404-627 87-310 (310)
11 1fnb_A Ferredoxin-NADP+ reduct 100.0 3.3E-37 1.1E-41 322.7 27.4 263 231-627 38-314 (314)
12 2b5o_A FNR, ferredoxin--NADP r 100.0 4.2E-36 1.5E-40 324.2 28.8 265 230-627 122-402 (402)
13 2rc5_A Ferredoxin-NADP reducta 100.0 9.1E-35 3.1E-39 304.1 26.9 211 403-627 91-314 (314)
14 3lo8_A Ferredoxin--NADP reduct 100.0 4.8E-35 1.6E-39 305.8 18.6 224 391-627 62-311 (311)
15 3jqq_A Ferredoxin NADP reducta 100.0 9.9E-34 3.4E-38 296.3 26.8 287 225-627 10-316 (316)
16 3hr4_A Nitric oxide synthase, 100.0 1.6E-32 5.6E-37 269.0 15.9 151 5-161 39-189 (219)
17 1bvy_F Protein (cytochrome P45 100.0 1E-27 3.4E-32 232.0 15.9 147 5-157 20-167 (191)
18 1ykg_A SIR-FP, sulfite reducta 99.9 3.2E-27 1.1E-31 224.1 13.4 152 4-161 7-158 (167)
19 2hna_A Protein MIOC, flavodoxi 99.9 1E-27 3.5E-32 222.5 7.4 146 6-156 1-146 (147)
20 1tvc_A Methane monooxygenase c 99.9 1.4E-26 4.7E-31 234.0 14.5 180 391-596 45-231 (250)
21 3f6r_A Flavodoxin; FMN binding 99.9 2E-26 6.7E-31 213.9 11.9 144 6-155 1-147 (148)
22 2r6h_A NADH:ubiquinone oxidore 99.9 2.7E-26 9.2E-31 236.9 12.4 180 403-596 84-276 (290)
23 1qfj_A Protein (flavin reducta 99.9 1.7E-26 5.8E-31 230.5 10.3 178 390-594 30-213 (232)
24 1fdr_A Flavodoxin reductase; f 99.9 3.6E-26 1.2E-30 230.4 9.4 184 390-596 31-228 (248)
25 2eix_A NADH-cytochrome B5 redu 99.9 4.4E-26 1.5E-30 229.2 9.3 179 391-596 43-232 (243)
26 1umk_A B5R, NADH-cytochrome B5 99.9 3.7E-26 1.3E-30 234.1 7.4 188 391-596 48-264 (275)
27 1krh_A Benzoate 1,2-dioxygenas 99.9 1.6E-25 5.3E-30 236.4 11.9 177 391-596 140-322 (338)
28 4fk8_A Ferredoxin--NADP reduct 99.9 2.6E-26 8.9E-31 234.7 3.9 200 391-627 48-268 (271)
29 4eh1_A Flavohemoprotein; struc 99.9 1.6E-25 5.4E-30 225.0 9.4 180 391-597 35-223 (243)
30 2bgi_A Ferredoxin-NADP(H) redu 99.9 2.7E-25 9.3E-30 227.4 7.8 183 391-596 45-247 (272)
31 4g1v_A Flavohemoglobin; three 99.9 1.5E-24 5.2E-29 234.0 13.4 180 391-596 185-377 (399)
32 1gvh_A Flavohemoprotein; oxido 99.9 8.7E-25 3E-29 235.7 11.3 177 391-596 184-377 (396)
33 2qdx_A Ferredoxin reductase; o 99.9 2.1E-25 7.1E-30 226.3 5.6 184 390-596 31-233 (257)
34 1ep3_B Dihydroorotate dehydrog 99.9 8.4E-25 2.9E-29 222.5 9.5 169 391-596 35-211 (262)
35 2cnd_A NADH-dependent nitrate 99.9 9.3E-25 3.2E-29 222.9 6.8 188 391-595 44-257 (270)
36 1cqx_A Flavohemoprotein; globi 99.9 4.9E-24 1.7E-28 230.4 11.3 181 391-596 186-383 (403)
37 1f4p_A Flavodoxin; electron tr 99.9 9.3E-24 3.2E-28 195.5 11.4 143 7-155 1-146 (147)
38 2pia_A Phthalate dioxygenase r 99.9 7.4E-24 2.5E-28 222.0 10.0 172 391-596 40-214 (321)
39 2wc1_A Flavodoxin; electron tr 99.9 1.4E-22 4.9E-27 194.7 6.4 149 6-160 1-180 (182)
40 2bmv_A Flavodoxin; electron tr 99.9 2.3E-22 8E-27 189.8 5.7 140 6-156 1-163 (164)
41 1yob_A Flavodoxin 2, flavodoxi 99.8 5.9E-22 2E-26 189.9 7.5 145 7-157 1-176 (179)
42 2fcr_A Flavodoxin; electron tr 99.8 7E-21 2.4E-25 181.3 12.8 142 8-156 1-171 (173)
43 5nul_A Flavodoxin; electron tr 99.8 8.9E-21 3.1E-25 173.5 12.9 135 9-153 1-136 (138)
44 1obo_A Flavodoxin; electron tr 99.8 1.2E-20 4.2E-25 178.7 12.1 143 7-156 2-167 (169)
45 1czn_A Flavodoxin; FMN binding 99.8 1.3E-20 4.4E-25 178.5 9.9 144 7-156 1-167 (169)
46 1ag9_A Flavodoxin; electron tr 99.8 1.1E-20 3.9E-25 180.2 8.0 144 7-157 1-168 (175)
47 3hly_A Flavodoxin-like domain; 99.8 1.2E-19 4.1E-24 170.8 8.4 141 7-159 1-145 (161)
48 3fni_A Putative diflavin flavo 99.8 8.2E-20 2.8E-24 171.5 6.8 141 6-158 4-149 (159)
49 2gpj_A Siderophore-interacting 99.7 3.1E-19 1E-23 180.4 4.5 166 390-595 39-211 (252)
50 2fz5_A Flavodoxin; alpha/beta 99.7 9.8E-18 3.4E-22 152.5 12.6 132 9-153 2-135 (137)
51 2xod_A NRDI protein, NRDI; fla 99.7 2.8E-18 9.7E-23 153.0 8.4 116 9-153 1-117 (119)
52 3lrx_A Putative hydrogenase; a 99.7 1E-17 3.5E-22 157.0 6.1 125 449-596 1-134 (158)
53 1rlj_A NRDI protein; flavoprot 99.7 6.2E-17 2.1E-21 147.9 6.2 123 6-156 8-131 (139)
54 3lyu_A Putative hydrogenase; t 99.6 2.1E-16 7.2E-21 145.3 7.6 120 457-597 3-130 (142)
55 3a1f_A Cytochrome B-245 heavy 99.6 1E-16 3.5E-21 153.4 3.6 133 458-597 2-169 (186)
56 2a5l_A Trp repressor binding p 99.6 2E-14 7E-19 139.3 12.7 124 5-130 4-146 (200)
57 4dik_A Flavoprotein; TM0755, e 99.5 9.9E-15 3.4E-19 157.1 11.0 139 5-156 264-409 (410)
58 2ark_A Flavodoxin; FMN, struct 99.5 3.1E-14 1.1E-18 137.0 12.5 152 5-160 3-169 (188)
59 3n3a_C Protein NRDI; ribonucle 99.5 2E-14 6.9E-19 131.2 10.3 126 6-154 20-150 (153)
60 1e5d_A Rubredoxin\:oxygen oxid 99.5 3E-14 1E-18 153.2 11.9 143 6-158 252-398 (402)
61 1ycg_A Nitric oxide reductase; 99.5 1.9E-14 6.4E-19 154.6 8.5 141 6-156 251-396 (398)
62 3b6i_A Flavoprotein WRBA; flav 99.5 1.4E-13 4.9E-18 133.0 12.2 121 6-129 1-141 (198)
63 2ohh_A Type A flavoprotein FPR 99.5 7.8E-14 2.7E-18 150.0 10.2 145 4-156 254-402 (404)
64 2q9u_A A-type flavoprotein; fl 99.5 1.3E-13 4.4E-18 149.0 11.0 144 5-158 255-405 (414)
65 3d7n_A Flavodoxin, WRBA-like p 99.4 6.3E-14 2.2E-18 135.5 5.7 121 1-128 1-127 (193)
66 2zki_A 199AA long hypothetical 99.4 2.6E-13 8.9E-18 131.5 9.8 151 5-158 3-193 (199)
67 1ydg_A Trp repressor binding p 99.4 2.8E-13 9.6E-18 132.6 9.7 156 1-158 1-199 (211)
68 4ici_A Putative flavoprotein; 99.4 4.9E-12 1.7E-16 119.7 13.3 126 4-152 11-168 (171)
69 2vzf_A NADH-dependent FMN redu 99.3 1.6E-12 5.5E-17 125.9 7.1 121 6-133 2-142 (197)
70 3klb_A Putative flavoprotein; 99.3 8.4E-12 2.9E-16 117.1 11.7 125 5-152 3-160 (162)
71 3edo_A Flavoprotein, putative 99.2 7.9E-11 2.7E-15 109.0 10.9 122 6-149 3-150 (151)
72 1t5b_A Acyl carrier protein ph 99.1 4.8E-10 1.6E-14 108.3 11.1 148 6-157 1-196 (201)
73 3gfs_A FMN-dependent NADPH-azo 99.0 2.5E-10 8.5E-15 108.1 6.9 114 7-133 1-136 (174)
74 1sqs_A Conserved hypothetical 99.0 1E-09 3.4E-14 109.7 10.7 148 6-158 1-179 (242)
75 1rtt_A Conserved hypothetical 99.0 9.6E-10 3.3E-14 105.8 9.7 119 5-128 5-143 (193)
76 2q62_A ARSH; alpha/beta, flavo 98.9 7.7E-09 2.6E-13 103.4 14.0 123 4-129 32-171 (247)
77 1t0i_A YLR011WP; FMN binding p 98.9 2.8E-09 9.6E-14 102.3 9.7 112 7-128 1-149 (191)
78 2fzv_A Putative arsenical resi 98.8 3.1E-08 1.1E-12 100.3 12.3 121 5-128 57-195 (279)
79 2hpv_A FMN-dependent NADH-azor 98.8 4.9E-08 1.7E-12 94.9 12.9 147 6-156 1-201 (208)
80 3fvw_A Putative NAD(P)H-depend 98.7 5.1E-08 1.8E-12 93.8 11.9 124 6-133 2-149 (192)
81 3s2y_A Chromate reductase; ura 98.2 1.5E-09 5.2E-14 105.2 0.0 124 1-129 1-145 (199)
82 4hs4_A Chromate reductase; tri 98.7 7.7E-08 2.6E-12 93.1 11.6 123 1-128 1-144 (199)
83 1rli_A Trp repressor binding p 98.6 5.3E-08 1.8E-12 92.4 8.7 119 5-129 2-153 (184)
84 3rpe_A MDAB, modulator of drug 98.6 8E-07 2.7E-11 86.8 14.5 153 4-161 23-217 (218)
85 3r6w_A FMN-dependent NADH-azor 98.5 6E-07 2.1E-11 87.5 12.0 148 6-157 1-206 (212)
86 3k1y_A Oxidoreductase; structu 98.5 4.3E-07 1.5E-11 87.1 10.0 123 5-134 10-159 (191)
87 3lcm_A SMU.1420, putative oxid 98.4 1.1E-06 3.9E-11 84.5 10.7 150 7-160 1-189 (196)
88 1d4a_A DT-diaphorase, quinone 98.4 1.6E-06 5.6E-11 87.9 11.9 151 6-159 2-214 (273)
89 3f2v_A General stress protein 98.4 1.1E-06 3.6E-11 84.4 9.2 154 6-160 1-182 (192)
90 3svl_A Protein YIEF; E. coli C 98.3 1.6E-06 5.6E-11 83.3 10.2 150 5-159 3-182 (193)
91 2amj_A Modulator of drug activ 98.3 8.2E-06 2.8E-10 79.0 14.7 145 6-151 12-198 (204)
92 3p0r_A Azoreductase; structura 98.2 6.1E-06 2.1E-10 80.4 11.7 148 6-157 4-205 (211)
93 3u7r_A NADPH-dependent FMN red 98.2 1.5E-05 5.2E-10 76.2 14.0 119 6-128 2-139 (190)
94 3tem_A Ribosyldihydronicotinam 98.2 6.6E-06 2.3E-10 81.1 10.4 151 7-160 2-214 (228)
95 3u7i_A FMN-dependent NADH-azor 98.1 3.2E-05 1.1E-09 75.9 14.9 151 4-156 2-210 (223)
96 4gi5_A Quinone reductase; prot 97.6 0.0011 3.7E-08 67.1 15.7 154 5-161 21-243 (280)
97 3ha2_A NADPH-quinone reductase 97.6 0.00033 1.1E-08 66.0 11.1 146 7-159 1-167 (177)
98 3l9w_A Glutathione-regulated p 97.5 0.0006 2.1E-08 73.1 12.5 154 1-158 231-406 (413)
99 3rht_A (gatase1)-like protein; 87.3 0.6 2E-05 46.3 5.3 82 5-99 3-86 (259)
100 1tvm_A PTS system, galactitol- 81.4 3.6 0.00012 35.0 7.0 57 5-62 20-78 (113)
101 3nbm_A PTS system, lactose-spe 70.5 7 0.00024 33.0 5.7 53 5-59 5-59 (108)
102 4e5v_A Putative THUA-like prot 69.3 29 0.00099 34.4 10.9 71 6-80 4-83 (281)
103 3czc_A RMPB; alpha/beta sandwi 66.1 2 6.8E-05 36.5 1.3 53 4-57 16-71 (110)
104 2l2q_A PTS system, cellobiose- 64.2 4.9 0.00017 33.9 3.5 52 4-57 2-55 (109)
105 1t0b_A THUA-like protein; treh 64.1 9 0.00031 37.5 5.9 69 24-101 34-106 (252)
106 1vkr_A Mannitol-specific PTS s 62.2 17 0.00058 31.4 6.6 42 5-46 12-56 (125)
107 3lo8_A Ferredoxin--NADP reduct 61.7 15 0.00051 36.8 7.2 45 230-275 28-73 (311)
108 1ccw_A Protein (glutamate muta 61.4 12 0.00042 32.7 5.7 120 11-156 6-134 (137)
109 1e2b_A Enzyme IIB-cellobiose; 56.1 5.8 0.0002 33.3 2.5 56 6-64 3-60 (106)
110 3s40_A Diacylglycerol kinase; 51.3 40 0.0014 33.6 8.3 91 1-104 3-101 (304)
111 1iow_A DD-ligase, DDLB, D-ALA\ 50.6 55 0.0019 31.9 9.2 46 6-51 2-50 (306)
112 2fgx_A Putative thioredoxin; N 46.7 41 0.0014 28.1 6.3 41 5-45 28-68 (107)
113 2iuy_A Avigt4, glycosyltransfe 42.5 22 0.00076 35.4 4.8 40 6-45 3-57 (342)
114 2xdq_A Light-independent proto 40.4 1.5E+02 0.005 31.3 11.1 109 7-128 197-345 (460)
115 1mkz_A Molybdenum cofactor bio 38.4 31 0.0011 31.4 4.6 40 90-129 8-47 (172)
116 3gv0_A Transcriptional regulat 35.9 1.6E+02 0.0056 28.0 9.9 133 4-158 6-155 (288)
117 4eg0_A D-alanine--D-alanine li 35.0 35 0.0012 34.0 4.8 41 6-46 13-56 (317)
118 2gek_A Phosphatidylinositol ma 34.3 33 0.0011 34.8 4.6 45 2-46 16-63 (406)
119 3qyf_A Crispr-associated prote 32.7 41 0.0014 34.0 4.7 40 8-47 92-132 (324)
120 3qk7_A Transcriptional regulat 32.7 2.1E+02 0.0072 27.3 10.2 134 2-158 2-154 (294)
121 2r6h_A NADH:ubiquinone oxidore 31.8 72 0.0025 31.0 6.5 38 233-275 13-51 (290)
122 3s2u_A UDP-N-acetylglucosamine 31.2 39 0.0013 34.5 4.5 26 473-498 3-30 (365)
123 3ju3_A Probable 2-oxoacid ferr 30.8 55 0.0019 27.7 4.7 38 7-48 15-52 (118)
124 3mw8_A Uroporphyrinogen-III sy 29.3 40 0.0014 32.1 4.0 76 24-126 13-96 (240)
125 3re1_A Uroporphyrinogen-III sy 29.0 64 0.0022 31.4 5.5 84 22-129 24-118 (269)
126 2m1z_A LMO0427 protein; homolo 28.5 63 0.0021 27.0 4.4 78 6-102 2-87 (106)
127 2kyr_A Fructose-like phosphotr 27.5 59 0.002 27.5 4.1 59 6-64 5-71 (111)
128 3uow_A GMP synthetase; structu 27.5 49 0.0017 36.2 4.7 53 1-60 2-57 (556)
129 2k8s_A Thioredoxin; dimer, str 27.0 49 0.0017 25.1 3.5 39 7-45 2-40 (80)
130 1yqh_A DUF77, IG hypothetical 27.0 2.7E+02 0.0094 23.1 8.3 70 61-138 15-87 (109)
131 1wcw_A Uroporphyrinogen III sy 26.8 40 0.0014 32.5 3.5 82 24-126 19-112 (261)
132 3egc_A Putative ribose operon 26.7 2E+02 0.0069 27.3 8.8 133 5-159 7-154 (291)
133 1w78_A FOLC bifunctional prote 26.3 4.3E+02 0.015 27.1 11.8 107 474-596 297-416 (422)
134 4es6_A Uroporphyrinogen-III sy 25.4 83 0.0028 30.1 5.5 82 23-128 17-109 (254)
135 3dfz_A SIRC, precorrin-2 dehyd 25.3 1.3E+02 0.0043 28.7 6.6 93 10-124 93-188 (223)
136 3l49_A ABC sugar (ribose) tran 25.1 4.1E+02 0.014 24.9 10.7 133 6-158 5-153 (291)
137 2xhz_A KDSD, YRBH, arabinose 5 24.7 2.6E+02 0.0087 24.7 8.5 67 10-82 52-121 (183)
138 2r60_A Glycosyl transferase, g 24.4 54 0.0018 34.6 4.3 29 16-44 31-59 (499)
139 3lzd_A DPH2; diphthamide biosy 24.2 36 0.0012 35.3 2.6 51 5-55 263-314 (378)
140 3pzy_A MOG; ssgcid, seattle st 23.8 33 0.0011 31.0 2.0 40 90-129 5-46 (164)
141 1qfj_A Protein (flavin reducta 23.8 96 0.0033 28.9 5.5 36 233-274 6-41 (232)
142 2lnb_A Z-DNA-binding protein 1 23.5 1.3E+02 0.0044 23.6 5.0 27 599-625 41-67 (80)
143 3vsj_A 2-amino-5-chlorophenol 23.4 3.6E+02 0.012 26.0 9.8 80 20-106 89-180 (271)
144 3m3p_A Glutamine amido transfe 23.1 1.1E+02 0.0039 29.4 6.0 53 6-62 3-57 (250)
145 3ipz_A Monothiol glutaredoxin- 22.9 85 0.0029 25.8 4.4 45 69-125 3-49 (109)
146 3mc3_A DSRE/DSRF-like family p 22.9 1.2E+02 0.0042 25.9 5.6 43 3-45 12-56 (134)
147 3k4h_A Putative transcriptiona 22.8 1.9E+02 0.0064 27.5 7.6 132 5-158 7-159 (292)
148 2qv7_A Diacylglycerol kinase D 22.6 2.5E+02 0.0086 28.0 8.8 39 6-44 24-64 (337)
149 2iuf_A Catalase; oxidoreductas 22.2 1.7E+02 0.006 32.7 7.8 89 5-101 528-641 (688)
150 3jy6_A Transcriptional regulat 22.0 3.8E+02 0.013 25.0 9.7 106 6-128 7-127 (276)
151 3lvu_A ABC transporter, peripl 22.0 89 0.003 29.7 5.0 38 8-45 129-166 (258)
152 1tvc_A Methane monooxygenase c 22.0 77 0.0026 30.1 4.5 38 233-275 14-56 (250)
153 3tb6_A Arabinose metabolism tr 21.8 2.8E+02 0.0096 26.2 8.7 134 7-158 16-164 (298)
154 2x6q_A Trehalose-synthase TRET 21.8 89 0.0031 31.8 5.2 40 5-44 39-79 (416)
155 2pjk_A 178AA long hypothetical 21.7 31 0.0011 31.6 1.5 40 90-129 13-59 (178)
156 2pia_A Phthalate dioxygenase r 21.7 1.3E+02 0.0044 29.9 6.3 38 233-275 12-51 (321)
157 1t1v_A SH3BGRL3, SH3 domain-bi 21.1 1.4E+02 0.0046 23.5 5.1 37 6-45 1-42 (93)
158 3nrs_A Dihydrofolate:folylpoly 20.8 3.8E+02 0.013 27.9 10.0 105 474-594 312-435 (437)
159 4eyg_A Twin-arginine transloca 20.8 1.8E+02 0.0061 28.7 7.2 85 5-102 138-231 (368)
160 1ep3_B Dihydroorotate dehydrog 20.6 78 0.0027 30.4 4.2 38 233-275 9-46 (262)
161 2a33_A Hypothetical protein; s 20.5 65 0.0022 30.5 3.4 38 1-38 8-48 (215)
162 3s5j_B Ribose-phosphate pyroph 20.3 2.8E+02 0.0094 28.0 8.3 115 6-129 1-126 (326)
163 3g85_A Transcriptional regulat 20.2 4.6E+02 0.016 24.6 9.9 132 5-158 10-155 (289)
164 4eh1_A Flavohemoprotein; struc 20.0 1.6E+02 0.0053 27.6 6.2 38 233-275 7-46 (243)
No 1
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=100.00 E-value=4.8e-109 Score=936.44 Aligned_cols=585 Identities=32% Similarity=0.590 Sum_probs=502.9
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCC-----CCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP-----EEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~-----~~~~vi~~~sT~g~G~~p~~~~~F~~~L 80 (628)
+++|+|+|||+|||||++|++|++.+.+.|+.+++.++++++..++. +++.+||++||||+|++|+|+..|+++|
T Consensus 18 ~~~i~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~G~G~~pd~~~~F~~~L 97 (618)
T 3qe2_A 18 GRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWL 97 (618)
T ss_dssp TCSEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECBGGGBCCGGGHHHHHHH
T ss_pred CCeEEEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEEEEEcCccCCCCCCHHHHHHHHHH
Confidence 56799999999999999999999999999999999999998877764 4789999999999999999999999999
Q ss_pred HhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhC
Q 006874 81 LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQID 160 (628)
Q Consensus 81 ~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~ 160 (628)
.... ..|+|++|||||+||++|+|||.+++.++++|+++||+++.+++++|++. +.+++|+.|.+.+|++|.+.+
T Consensus 98 ~~~~---~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~~g~~D~~~--~~~~~~~~W~~~l~~~l~~~~ 172 (618)
T 3qe2_A 98 QETD---VDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWLAVCEHF 172 (618)
T ss_dssp HHCC---CCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSCCEEEETTS--CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcc---ccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeecccccccCC--CcHHHHHHHHHHHHHHHHHHh
Confidence 8743 23899999999999999999999999999999999999999999999974 489999999999999999887
Q ss_pred CCCCCCCCCcccccccccCCCceEEEEecccccccccccccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeee
Q 006874 161 PSFFPQGPDHVIEEMKLIDQPKVHITYHSIDNAASRLSNASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQP 239 (628)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 239 (628)
+ +.... .+. ..+.+.+.............. ... ......... ..+...++|. +|++|++
T Consensus 173 ~--~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~--~~~~~~~~~~a~v~~n~~ 232 (618)
T 3qe2_A 173 G--VEATG-----EES--SIRQYELVVHTDIDAAKVYMG--EMG-------RLKSYENQK--PPFDAKNPFLAAVTTNRK 232 (618)
T ss_dssp T--CCCC--------C--CCCSEEEEECTTCCGGGSBCS--CCS-------STTTTTSCC--SCCSSSSCEEEEEEEEEE
T ss_pred C--CCccc-----ccc--cccceeEEecccccccccccc--ccc-------ccccccccC--CCcccCCcEEEEEEeEEE
Confidence 6 22110 111 235666655322110000000 000 000000000 0112233555 9999999
Q ss_pred cCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCcccccc
Q 006874 240 LTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIK 319 (628)
Q Consensus 240 lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~t 319 (628)
||+ ++.++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++......... ..+++.|+|
T Consensus 233 Lt~-~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~----~~~~p~~~t 307 (618)
T 3qe2_A 233 LNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESNK----KHPFPCPTS 307 (618)
T ss_dssp CSC-CSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCTTCEEEEEESCTTCSC----CSSSSSSEE
T ss_pred cCC-CCCCcEEEEEEEcCCCCcccccCCEEEEEcCCCHHHHHHHHHHhCcCCCceEEEecCCccccC----CCCCCCceE
Confidence 997 568999999999998889999999999999999999999999999999999999765432111 123668999
Q ss_pred HHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhc--CccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHH
Q 006874 320 LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA--SPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLV 397 (628)
Q Consensus 320 l~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~ 397 (628)
++++|++|+||++ +|++.||+.||.||+|+.+|++|++|+ +++|+++|.+|+.+++++++|+|++||++++|+++|+
T Consensus 308 l~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps~~~p~~~l~ 386 (618)
T 3qe2_A 308 YRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPSLRPPIDHLC 386 (618)
T ss_dssp HHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTTBCCCHHHHH
T ss_pred HHHhhhhEeecCC-CCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCccCCCHHHHH
Confidence 9999999999999 999999999999999999999999999 6788999999999999999999999999999999999
Q ss_pred HhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCc-----eEEEEeecCCCCCC-CC
Q 006874 398 QLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI-----YIPAWFQKGSLPRP-PP 471 (628)
Q Consensus 398 ~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~-----~v~i~~~~g~F~lp-~~ 471 (628)
+++|+++||+|||||+|..+++.++|+|++|+|.+..++.+.|+||+||+++.+. |+ +|.+++|.|.|++| ++
T Consensus 387 ~~lp~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~-Gd~~~~~~v~v~~p~g~F~lp~~~ 465 (618)
T 3qe2_A 387 ELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPV-GENGGRALVPMFVRKSQFRLPFKA 465 (618)
T ss_dssp HHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEECCSCCCCSST
T ss_pred HhccccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhccc-CCCCcceEEEEEEecCcccCCCCC
Confidence 9999999999999999977789999999999999988888999999999977541 66 99999999999999 77
Q ss_pred CCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecC
Q 006874 472 SVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 549 (628)
Q Consensus 472 ~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~ 549 (628)
.+|+||||+||||||||+|++++......+ ..++++||||||+++ |++|++||++|.+. |.++ +++++|||+
T Consensus 466 ~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~-g~l~-----~l~~a~Srd 539 (618)
T 3qe2_A 466 TTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD-GALT-----QLNVAFSRE 539 (618)
T ss_dssp TSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHH-TSSS-----EEEEEETTS
T ss_pred CCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhc-CCCc-----EEEEEEcCC
Confidence 899999999999999999999997643221 247899999999996 99999999999998 8876 899999999
Q ss_pred CCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 006874 550 QPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628 (628)
Q Consensus 550 ~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvws 628 (628)
+..++||||+|.++.+.+++++.++++||||||++.|+++|.++|.+|++++++++.++|++|+++|+++|||++||||
T Consensus 540 ~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~s 618 (618)
T 3qe2_A 540 QSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVWS 618 (618)
T ss_dssp SSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeecC
Confidence 9889999999999999999999779999999997699999999999999999999999999999999999999999998
No 2
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=100.00 E-value=3e-105 Score=914.74 Aligned_cols=590 Identities=27% Similarity=0.436 Sum_probs=495.0
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHH-hCCCCcEEeeCCCCCccCCCCC-CeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESE-RRGCPVVVRPVDDYDARCLPEE-DTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~-~~g~~v~~~~l~~~~~~~l~~~-~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
.|++++|+|+|+|||||++|++|++.+. +.|+.+.+.++++++..++.++ +.+||++||||+|++|+++..|+++|..
T Consensus 48 ~~~ki~IlY~S~tGnte~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~~~vi~~~sT~G~G~~p~~~~~F~~~l~~ 127 (682)
T 2bpo_A 48 NNKNYLVLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGDFPDGAVNFEDFICN 127 (682)
T ss_dssp TTCSEEEEEECSSSHHHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCCSEEEEEEECBTTTBCCSSCHHHHHHHHT
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcCCeEEEEeCccCCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999999998 8899999999999999889899 9999999999999999999999999976
Q ss_pred ccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCC
Q 006874 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPS 162 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~ 162 (628)
... ..|+|++|||||+||++|++||.+++.++++|+++||+++.+.+++|+++ ++.+++|++|.++||++|.+.++
T Consensus 128 ~~~--~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~~D~~~-~~~~~~~~~W~~~l~~~l~~~~~- 203 (682)
T 2bpo_A 128 AEA--GALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGA-GTTDEDYMAWKDSILEVLKDELH- 203 (682)
T ss_dssp CCT--TSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEETTT-TCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccc--hhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEEEecCC-cccHHHHHHHHHHHHHHHHhhcC-
Confidence 542 23899999999999999999999999999999999999999999999987 56899999999999999998876
Q ss_pred CCCCCCCcccccccccCCCceEEEEeccc-cccccccccc-chhhhhhhhhhhhccccccccCcCCCcccee-eeeeeee
Q 006874 163 FFPQGPDHVIEEMKLIDQPKVHITYHSID-NAASRLSNAS-DLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQP 239 (628)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 239 (628)
...+.. . ..|.+.+...+.. ......+... .+.... ... ....... ..+....+|. +|+.|++
T Consensus 204 -~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~--~~~~~~~p~~a~v~~~~~ 269 (682)
T 2bpo_A 204 -LDEQEA-------K-FTSQFQYTVLNEITDSMSLGEPSAHYLPSHQ--LNR-NADGIQL--GPFDLSQPYIAPIVKSRE 269 (682)
T ss_dssp -CCCCCC-------C-CCCSBCCEECSSCCTTSCSSCSSGGGSTTSC--CCC-CTTCCBC--SCCBTTBCCCEEEEEEEE
T ss_pred -Cccccc-------c-cCCcceeEecccCCccccccCcccccccccc--ccc-ccccccc--CcccCCCceEEEEEEEEE
Confidence 322110 0 2344544332110 0000000000 000000 000 0000000 0111223455 9999999
Q ss_pred cCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcccCCCcccccc
Q 006874 240 LTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDIHKNTTEVPIK 319 (628)
Q Consensus 240 lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~~~~~~~~~~t 319 (628)
||+ ++.++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||+++++.|++++....... +++.|+|
T Consensus 270 L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~------p~p~~~t 342 (682)
T 2bpo_A 270 LFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNPLEKVEQFLSIFNLDPETIFDLKPLDPTVKV------PFPTPTT 342 (682)
T ss_dssp CCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEECCBSSTTCCC------SSCSSEE
T ss_pred ccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCCHHHHHHHHHHhhccCCcEEEEecCCcccCC------CCCCCcc
Confidence 999 889999999999987899999999999999999999999999999999999998754432222 2669999
Q ss_pred HHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCC----CCCCCHHH
Q 006874 320 LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP----SVQMPIDW 395 (628)
Q Consensus 320 l~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~----~~~~p~~~ 395 (628)
|+++|++|+||++ +|++.||+.||.||+|+.+|++|++|+ +++++|.+|+...++|++|+|.+|| ++++|+++
T Consensus 343 l~~~l~~~ldi~~-~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~~~s~~~p~~~ 419 (682)
T 2bpo_A 343 IGAAIKHYLEITG-PVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDGAKWDTVPMQF 419 (682)
T ss_dssp HHHHHHHTBCCSS-CCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTTCCCTTSCHHH
T ss_pred HHHHHHHhhhccC-CCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCcccccCCCHHH
Confidence 9999999999999 999999999999999999999999999 6999999999999999999999999 89999999
Q ss_pred HHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCC---CCcccccccHHhhCcCCC----------CCc-------
Q 006874 396 LVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY---KRKRTGLCSVWLAGLDPQ----------QGI------- 455 (628)
Q Consensus 396 l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~---~~~~~G~~S~~L~~l~~~----------~G~------- 455 (628)
++..+|+++||+|||||+|..+++.++|+|++++|.++. ++.+.|+||+||+++++. .|+
T Consensus 420 l~~~lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP 499 (682)
T 2bpo_A 420 LVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGP 499 (682)
T ss_dssp HHHHSCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCG
T ss_pred HHHhCcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceeeccC
Confidence 999999999999999999966689999999999999876 577899999999877550 033
Q ss_pred -------eEEEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC------CC-CCCCeEEEEcCCCCCcccc
Q 006874 456 -------YIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS------SG-PAAPIIFFFGCRNEDDFLY 520 (628)
Q Consensus 456 -------~v~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~------~~-~~~~~~L~~G~R~~~d~ly 520 (628)
.|.++++.+.|++| ++.+|+||||+||||||||+|+|++..... .+ ..++++||||||+++|++|
T Consensus 500 ~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly 579 (682)
T 2bpo_A 500 RKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLY 579 (682)
T ss_dssp GGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSSSCTT
T ss_pred cCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChhhhhh
Confidence 55666666667898 778999999999999999999999987542 11 2489999999999999999
Q ss_pred HHHHHHhHhcCCCcccCCCCcEEEEEec-CCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHH
Q 006874 521 RELWLSHSLNDGVFSEAKGGGFYVAFSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVS 599 (628)
Q Consensus 521 ~~el~~~~~~~g~l~~~~~~~~~~a~Sr-~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~ 599 (628)
++||++|..+.|... +++++||| ++..++||||+|.++.+.+++++.++++||||||+..|+++|.++|.+|++
T Consensus 580 ~dEl~~~~~~~g~~~-----~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~~V~~~L~~i~~ 654 (682)
T 2bpo_A 580 QDEWPEYAKKLDGSF-----EMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILS 654 (682)
T ss_dssp TTTHHHHHHHHGGGE-----EEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCce-----EEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHHHHHHHHHHHHH
Confidence 999999954325443 89999999 566799999999999999999997799999999954999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006874 600 KEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 600 ~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
++++++.++|++|+++|+++|||++|||
T Consensus 655 ~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw 682 (682)
T 2bpo_A 655 RGKSITTDEATELIKMLKTSGRYQEDVW 682 (682)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 9999999999999999999999999999
No 3
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=100.00 E-value=1.6e-100 Score=875.72 Aligned_cols=581 Identities=29% Similarity=0.510 Sum_probs=489.0
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
.+++++|+|||+|||||.+|++|++.+. .|+.+++++|++++..+|..++++||++||||+|++|+|+..|+++|....
T Consensus 10 ~~~k~~IlY~S~TG~te~~A~~l~~~l~-~~~~~~v~~m~~~d~~~l~~~~~vl~vtsT~G~Gdpp~n~~~F~~~L~~~~ 88 (688)
T 1tll_A 10 KRVKATILYATETGKSQAYAKTLCEIFK-HAFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGDPPENGEKFGCALMEMR 88 (688)
T ss_dssp CSCEEEEEEECSSSHHHHHHHHHHHHHT-TTSEEEEEETTTSCTTSGGGCSEEEEEECCBTTTBCCGGGHHHHHHHHHHT
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHh-cCCCcEEeecccCChhHhccCceEEEEEcccCCCcCCHHHHHHHHHHHhcc
Confidence 4578999999999999999999999985 789999999999999999999999999999999999999999999998652
Q ss_pred ----------------------------Cc-----------ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCe
Q 006874 85 ----------------------------LS-----------KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGAT 125 (628)
Q Consensus 85 ----------------------------~~-----------~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~ 125 (628)
++ ...|+|++||||||||++|++||.+++.++++|+++||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~~F~~~~k~ld~~L~~lGa~ 168 (688)
T 1tll_A 89 HPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGE 168 (688)
T ss_dssp C-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCE
T ss_pred CCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchHHHHHHHHHHHHHHHHcCCc
Confidence 11 234899999999999999999999999999999999999
Q ss_pred EeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCCCCCCCCCCc-c----c--ccccccCCCceEEEEecccccccccc
Q 006874 126 AVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDPSFFPQGPDH-V----I--EEMKLIDQPKVHITYHSIDNAASRLS 198 (628)
Q Consensus 126 ~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~~~~~~~~~~-~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (628)
++.+.+++|+.. |+++.|++|.+++|+++.+.++ +..+... . + +.... .++.+.+......
T Consensus 169 rl~~~~~~D~~~--g~e~~f~~W~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------- 236 (688)
T 1tll_A 169 RILKMREGDELC--GQEEAFRTWAKKVFKAACDVFC--VGDDVNIEKPNNSLISNDRSW-KRNKFRLTYVAEA------- 236 (688)
T ss_dssp ESSCCEEEETTT--THHHHHHHHHHHHHHHHHHHHT--CCSSSCCC-------CCSSSC-CTTTEEEEECSCC-------
T ss_pred eeecceeeccCC--CcHHHHHHHHHHHHHHHHHhcC--CCccccccccccccccccccc-CCcceEEeccccc-------
Confidence 999999999973 5899999999999999988765 2221100 0 0 00001 1233444321110
Q ss_pred cccchhhhhhhhhhhhccccccccCcCCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCC-CCccCCCCEEEEecCCC
Q 006874 199 NASDLEGIRMQLETARSMSAGKLSNYNNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQD 276 (628)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~ 276 (628)
..+.. .. ... ....++. +|++|++||+++++++|+||+|+++++ +++|+|||+|+|+|.|+
T Consensus 237 --~~~~~---~~---~~~---------~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~ 299 (688)
T 1tll_A 237 --PDLTQ---GL---SNV---------HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH 299 (688)
T ss_dssp --CCHHH---HH---HHH---------TTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred --ccccc---cc---ccc---------ccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCC
Confidence 00000 00 000 1122444 999999999999999999999999754 69999999999999999
Q ss_pred HHHHHHHHHHcCC--CCCceEEEeecCccC---C-CCc-ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCC
Q 006874 277 PAAVDTFIQRCNL--DPDALITVQHKEMKN---Y-LPD-IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATA 349 (628)
Q Consensus 277 ~~~V~~~l~~l~l--~~~~~v~~~~~~~~~---~-~p~-~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~ 349 (628)
++.|+++|++||+ ++++.|+++...... + .+. ....++| ++||+++|++|+||++ +|++.||+.||.||+|
T Consensus 300 ~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~p~~~~~~~~~~~~~p-~~tl~~~l~~~lDi~~-~p~~~~l~~la~~a~~ 377 (688)
T 1tll_A 300 EDLVNALIERLEDAPPANHVVKVEMLEERNTALGVISNWKDESRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATN 377 (688)
T ss_dssp HHHHHHHHTTCSSCCCSCSCEEEEEEEECCCSSSCCEEEEECCSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCC
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeccccccCCCcccccccccCCCC-CccHHHHHHhheeCCC-CCCHHHHHHHHHHcCC
Confidence 9999999999986 677889886431110 0 000 0012355 9999999999999999 9999999999999999
Q ss_pred hhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEE
Q 006874 350 EHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVS 429 (628)
Q Consensus 350 ~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~ 429 (628)
+.+|++|++|++ +.++|.+|+...+++++|+|.+||++++|+++++..+|++++|+|||||+|..+++.++|+|++++
T Consensus 378 ~~ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps~~~p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~ 455 (688)
T 1tll_A 378 EKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVS 455 (688)
T ss_dssp HHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCCCHHHHHHHSCBCCCEEEEBCSCTTTSTTEEEEEEECCE
T ss_pred HHHHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCCcCCCHHHHHHhCcccceeEEeecCCcccCCCeEEEEEEEEE
Confidence 999999999996 788999999999999999999999999999999999999999999999999655899999999999
Q ss_pred eecCCC--CcccccccHHhhCcCCCCCceEEEEeec-CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC--CCCC
Q 006874 430 WTTPYK--RKRTGLCSVWLAGLDPQQGIYIPAWFQK-GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPA 503 (628)
Q Consensus 430 ~~~~~~--~~~~G~~S~~L~~l~~~~G~~v~i~~~~-g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~--~~~~ 503 (628)
|.++.+ +.+.|.||+||+++++ |+.|.+.+++ |.|.+| +..+|+||||+|||||||++|++++..... .+..
T Consensus 456 ~~~~~g~~~~~~G~~S~~L~~l~~--Gd~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~ 533 (688)
T 1tll_A 456 YHTRDGEGPVHHGVCSSWLNRIQA--DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNP 533 (688)
T ss_dssp EETGGGTSCEEECHHHHHHTTCCT--TSEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCC
T ss_pred EecCCCCCCcCCCchhHHHHhCCC--CCEEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCC
Confidence 987543 4678999999999999 9999999965 599999 778999999999999999999999987410 0123
Q ss_pred CCeEEEEcCCCCC-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCC-ccchhhhHHHc-HHHHHHHH-hCCCEEEE
Q 006874 504 APIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-KVYVQHKMLEQ-SQRIWNLL-LSKASIYV 579 (628)
Q Consensus 504 ~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~-k~yVqd~l~~~-~~~v~~~l-~~~~~iyv 579 (628)
++++||||||+++ |++|++||++|.+. +.+. +++++|||++.. ++||||+|.++ .+.+++++ .++++|||
T Consensus 534 ~~v~L~~G~R~~~~D~ly~dEL~~~~~~-~~~~-----~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYv 607 (688)
T 1tll_A 534 CPMVLVFGCRQSKIDHIYREETLQAKNK-GVFR-----ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYV 607 (688)
T ss_dssp CCEEEEEEESCTTTTCTTHHHHHHHHHT-TSEE-----EEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEEEeccchhhhhHHHHHHHHHHc-CCce-----EEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEE
Confidence 8999999999998 99999999999988 5544 899999998764 89999999998 88888887 45899999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 006874 580 AGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628 (628)
Q Consensus 580 CG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvws 628 (628)
|||+ .|+++|.++|.++++++++++.++|++|+++|+.++||+.|+|+
T Consensus 608 CGp~-~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf~ 655 (688)
T 1tll_A 608 CGDV-TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIFG 655 (688)
T ss_dssp EEEH-HHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred eCCH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCCEEEEecC
Confidence 9998 89999999999999999999999999999999999999999995
No 4
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=100.00 E-value=1.4e-81 Score=684.19 Aligned_cols=388 Identities=33% Similarity=0.628 Sum_probs=353.8
Q ss_pred Ccccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCC
Q 006874 227 KAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNY 305 (628)
Q Consensus 227 ~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~ 305 (628)
..++|. +|++|++||+ ++.++|+||+|++++++++|+|||+|+|||.|+++.|+++|++||+++++.|++........
T Consensus 59 ~~~p~~a~v~~n~~Lt~-~~~r~~~hie~dl~~s~l~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~ 137 (458)
T 3qfs_A 59 AKNPFLAAVTTNRKLNQ-GTERHLMHLELDISDSKIRYESGDHVAVYPANDSALVNQLGKILGADLDVVMSLNNLDEESN 137 (458)
T ss_dssp SSSCEEEEEEEEEECCS-SSSSCEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEEEEEESSTTCS
T ss_pred CCCCEEEEEEEEEEcCC-CCCCCEEEEEEEeCCCCcccCCCCEEEEEeeCCHHHHHHHHHHhCcCCCceEEecCCCcccc
Confidence 445676 9999999998 46899999999999889999999999999999999999999999999999999976433211
Q ss_pred CCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcC--ccCHHHHHHHHHcCCCCHhhHh
Q 006874 306 LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFAS--PEGRDDLYKYNQKERRTVLEVL 383 (628)
Q Consensus 306 ~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~~~d~l 383 (628)
.+ .+++.|+|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++ ++|+++|.+|+.+++++++|+|
T Consensus 138 ~~----~p~~~~~tl~~~l~~~~di~~-~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL 212 (458)
T 3qfs_A 138 KK----HPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAIL 212 (458)
T ss_dssp CC----CSSSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHH
T ss_pred cC----CCCCCCeeHHHHHHhcEeccC-CCCHHHHHHHHHHcCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHH
Confidence 11 236689999999999999999 9999999999999999999999999997 4688999999999999999999
Q ss_pred hhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCc------eE
Q 006874 384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI------YI 457 (628)
Q Consensus 384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~------~v 457 (628)
++||++++|+++|++.+|+++||+|||||+|..+++.++|+|++|+|.+..++.+.|+||+||+++.+ |+ .|
T Consensus 213 ~~fps~~~p~~~ll~~lp~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~--gg~~~~~~~v 290 (458)
T 3qfs_A 213 QDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEP--VGENGGRALV 290 (458)
T ss_dssp HHSTTBCCCHHHHHHHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCS--SCSSCCCCEE
T ss_pred HhCCccCCCHHHHHhhCCCCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhcc--CCccCCceEE
Confidence 99999999999999999999999999999997678999999999999998888999999999998876 54 69
Q ss_pred EEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCc
Q 006874 458 PAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVF 534 (628)
Q Consensus 458 ~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l 534 (628)
.+.+|.|.|.+| ++.+|+||||+||||||||+|++++......+ ..++++||||||++ +|++|++||++|.+. |.+
T Consensus 291 ~v~~p~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~-g~l 369 (458)
T 3qfs_A 291 PMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD-GAL 369 (458)
T ss_dssp EEEEECCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHH-TSS
T ss_pred EEEecCCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHc-CCC
Confidence 999999999999 77899999999999999999999986321111 13789999999997 599999999999998 776
Q ss_pred ccCCCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006874 535 SEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLK 614 (628)
Q Consensus 535 ~~~~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~ 614 (628)
+ ++++||||++..++||||+|.++.+.+|+++.+++.||||||++.|+++|+++|.+|++++++++.++|++|++
T Consensus 370 ~-----~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~ 444 (458)
T 3qfs_A 370 T-----QLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIK 444 (458)
T ss_dssp S-----EEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred C-----EEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5 89999999998899999999999999999998899999999976899999999999999999999999999999
Q ss_pred HHHHcCCEEEeecC
Q 006874 615 ALQRAGRYHVEAWS 628 (628)
Q Consensus 615 ~l~~~~Ry~~dvws 628 (628)
+|+++|||++||||
T Consensus 445 ~l~~~~RY~~Dvws 458 (458)
T 3qfs_A 445 KLMTKGRYSLDVWS 458 (458)
T ss_dssp HHHHTTSEEEEEEC
T ss_pred HHHHCCCeEEEecC
Confidence 99999999999998
No 5
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=100.00 E-value=1.8e-78 Score=673.75 Aligned_cols=388 Identities=29% Similarity=0.529 Sum_probs=345.8
Q ss_pred cccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCC--ceEEEeecCcc-
Q 006874 228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPD--ALITVQHKEMK- 303 (628)
Q Consensus 228 ~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~--~~v~~~~~~~~- 303 (628)
..+|. +|++|++||+++++++|+||+|++++++++|+|||+|+|+|.|+++.|+++|++||++++ ..|++++....
T Consensus 112 ~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~v~~~~~~~~~ 191 (539)
T 2qtl_A 112 DPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLLKIKADTK 191 (539)
T ss_dssp -CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCCHHHHHHHHHHTTCGGGTTSEEEEEECTTCC
T ss_pred CCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCCHHHHHHHHHHhCCCccCCeEEEEecccccc
Confidence 34566 999999999999999999999999988899999999999999999999999999999864 67887654321
Q ss_pred ---CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHh
Q 006874 304 ---NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL 380 (628)
Q Consensus 304 ---~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~ 380 (628)
..+| ++++.++|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++++|.++|++|+.+.+++++
T Consensus 192 ~~~~~~p----~~~p~~~tl~~~L~~~lDi~~-~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~~ll 266 (539)
T 2qtl_A 192 KKGATLP----QHIPAGCSLQFIFTWCLEIRA-IPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACACLL 266 (539)
T ss_dssp CTTCCCC----TTSCTTCBHHHHHHHTBCTTS-CCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTCCHH
T ss_pred CCCccCC----CCCCCcccHHHHHHHHhhhcC-CCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCCCHH
Confidence 1223 346689999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred hHhhhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecC--CCCcccccccHHhhCc---------
Q 006874 381 EVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP--YKRKRTGLCSVWLAGL--------- 449 (628)
Q Consensus 381 d~l~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~--~~~~~~G~~S~~L~~l--------- 449 (628)
|+|.+||++++|++++++.+|++++|+|||||+|..+++.++|+|++|+|.+. .++.+.|+||+||+++
T Consensus 267 dvL~~fps~~~p~~~ll~~lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~ 346 (539)
T 2qtl_A 267 DLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNI 346 (539)
T ss_dssp HHHHHSTTBCCCHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC----
T ss_pred HHHHhCCCcCCCHHHHHHhCcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccc
Confidence 99999999999999999999999999999999996578999999999999543 3455789999999987
Q ss_pred --CCCCCc-------eEEEEeecC-CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCC---CCCCCeEEEEcCCCC
Q 006874 450 --DPQQGI-------YIPAWFQKG-SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS---GPAAPIIFFFGCRNE 515 (628)
Q Consensus 450 --~~~~G~-------~v~i~~~~g-~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~---~~~~~~~L~~G~R~~ 515 (628)
++ |+ .|.+.+|.| .|.+| +..+|+||||+||||||||||+|+|...... ...+++|||||||++
T Consensus 347 ~~~~--Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~ 424 (539)
T 2qtl_A 347 HASH--EDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHK 424 (539)
T ss_dssp ------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCT
T ss_pred cCCC--CCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCc
Confidence 88 99 999999986 89999 7789999999999999999999998653211 124899999999999
Q ss_pred C-ccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC------CccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCH
Q 006874 516 D-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMP 587 (628)
Q Consensus 516 ~-d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~ 587 (628)
+ |++|++||++|.+. |.+. +++++|||++. .++||||+|.++.+.+|+++ .++++||||||++.|+
T Consensus 425 ~~D~ly~dEL~~~~~~-g~~~-----~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~ 498 (539)
T 2qtl_A 425 DRDYLFRKELRHFLKH-GILT-----HLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMA 498 (539)
T ss_dssp TTCCTTHHHHHHHHHT-TSSC-----EEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred chhhHHHHHHHHHHHh-CCCc-----EEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHH
Confidence 4 99999999999988 6554 89999999976 79999999999999999999 4599999999966899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeecC
Q 006874 588 SDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 628 (628)
Q Consensus 588 ~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvws 628 (628)
++|.++|.+|++++++++.++|++|+++|+++|||++||||
T Consensus 499 ~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw~ 539 (539)
T 2qtl_A 499 KDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIWS 539 (539)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 99999999999999999999999999999999999999997
No 6
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=100.00 E-value=2.8e-78 Score=649.76 Aligned_cols=375 Identities=29% Similarity=0.512 Sum_probs=338.1
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc-CCCCcccC
Q 006874 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK-NYLPDIHK 311 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~-~~~p~~~~ 311 (628)
+|++|++||+++++++|+||+|+++ ++++|+|||+|+|+|.|+++.|+++|++|||++++.|++...... ..+|
T Consensus 10 ~v~~n~~Lt~~~~~~~~~hie~~l~-~~~~Y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~~p---- 84 (393)
T 4dql_A 10 NVVASKELQQPGSARSTRHLEIELP-KEASYQEGDHLGVIPRNYEGIVNRVTARFGLDASQQIRLEAEEEKLAHLP---- 84 (393)
T ss_dssp EEEEEEECSCTTCSCCEEEEEEECC-TTCCCCTTCEEEECCCCCHHHHHHHHHHHTCCTTCEECCCC-------------
T ss_pred EEEeEEEcCCCCCCceEEEEEEECC-CCCccCCCCEEEEEccCCHHHHHHHHHHhCcCCCCeEEEeCCCCccccCC----
Confidence 9999999999999999999999998 689999999999999999999999999999999998887543221 1233
Q ss_pred CCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCCCC
Q 006874 312 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM 391 (628)
Q Consensus 312 ~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~~~ 391 (628)
++.|+|++++|++ +||++ +|++.||+.||.||+|+.+|++|++|++. ++|.+++..+++|++|+|++||++++
T Consensus 85 --~~~~~tl~~~l~~-~di~~-~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~fps~~~ 157 (393)
T 4dql_A 85 --LAKTVSVEELLQY-VELQD-PVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKYPACEM 157 (393)
T ss_dssp ----CCEEHHHHTTS-BCSSS-BCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHCTTCCC
T ss_pred --CCCcEEHHHHHHh-ccccC-CCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhCCCCCC
Confidence 6689999999999 99999 99999999999999999999999999974 37999999999999999999999999
Q ss_pred CHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCC-cccccccHHhhCcCCCCCceEEE--EeecCCCCC
Q 006874 392 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR-KRTGLCSVWLAGLDPQQGIYIPA--WFQKGSLPR 468 (628)
Q Consensus 392 p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~-~~~G~~S~~L~~l~~~~G~~v~i--~~~~g~F~l 468 (628)
|++++++.+|+++||+|||||+|..+++.++|+|+++.+.+..++ .+.|+||+||+++++ |+.|.+ .+|.|.|.+
T Consensus 158 p~~~~l~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~--Gd~v~v~v~~P~g~F~l 235 (393)
T 4dql_A 158 KFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE--GDTITCFISTPQSEFTL 235 (393)
T ss_dssp CHHHHHHTSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCT--TCEEEEEEECCSSCCCC
T ss_pred CHHHHHHhCCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCC--cCEEEEEEEcCCCCccc
Confidence 999999999999999999999996668999999999999876554 356999999999999 999995 567799999
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcEEEE
Q 006874 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVA 545 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~~~a 545 (628)
| +..+|+||||+|||||||++|+++|......+ ..++++||||||++ +|++|++||+++.+. |.+ +++++
T Consensus 236 p~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~l------~l~~a 308 (393)
T 4dql_A 236 PKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GII------TLHTA 308 (393)
T ss_dssp CSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSC------EEEEE
T ss_pred CccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CCe------EEEEE
Confidence 9 77899999999999999999999986432221 24789999999996 599999999999988 988 89999
Q ss_pred Eec-CCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEE
Q 006874 546 FSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHV 624 (628)
Q Consensus 546 ~Sr-~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~ 624 (628)
||| ++..++||||++.++.+.+++++.++++||||||+..|.++|+++|.+|++++++++.++|++|+++|+++|||++
T Consensus 309 ~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~ 388 (393)
T 4dql_A 309 FSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAK 388 (393)
T ss_dssp ESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE
T ss_pred EeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEE
Confidence 999 5567999999999999999999999999999999768999999999999999999999999999999999999999
Q ss_pred eecC
Q 006874 625 EAWS 628 (628)
Q Consensus 625 dvws 628 (628)
||||
T Consensus 389 dv~s 392 (393)
T 4dql_A 389 DVWA 392 (393)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 9997
No 7
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=100.00 E-value=3.4e-74 Score=626.72 Aligned_cols=386 Identities=30% Similarity=0.562 Sum_probs=342.0
Q ss_pred cee-eeeeeeecCCCCCCCcEEEEEEEecCC-CCccCCCCEEEEecCCCHHHHHHHHHHcCC--CCCceEEEeecCcc--
Q 006874 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSA-AIEYEVGDVLEILPSQDPAAVDTFIQRCNL--DPDALITVQHKEMK-- 303 (628)
Q Consensus 230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~-~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l--~~~~~v~~~~~~~~-- 303 (628)
+|. +|++|++||+++++++|+||+|+++++ +++|+|||+|+|+|.|+++.|+++|++||+ ++++.|+++...+.
T Consensus 30 ~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~d~~v~~~~~~~~~~ 109 (435)
T 1f20_A 30 VSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANHVVKVEMLEERNT 109 (435)
T ss_dssp CEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCCHHHHHHHHTTBSSCCCTTSCEEEEEEEEESS
T ss_pred cEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCCHHHHHHHHHHhCCCCCCCeEEEEeccccccC
Confidence 455 999999999999999999999999754 699999999999999999999999999976 67889988643110
Q ss_pred --CCCCc-ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHh
Q 006874 304 --NYLPD-IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVL 380 (628)
Q Consensus 304 --~~~p~-~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~ 380 (628)
...++ ....++| ++|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++ +.++|.+|+...+++++
T Consensus 110 ~~~~~~~~~~~~~~p-~~tl~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~i~ 185 (435)
T 1f20_A 110 ALGVISNWKDESRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMV 185 (435)
T ss_dssp STTCEEEEEECCSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHH
T ss_pred CCCccccccccCCCC-CccHHHHHHhceecCC-CCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccCCCHH
Confidence 00000 0012355 9999999999999999 9999999999999999999999999997 77899999999999999
Q ss_pred hHhhhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCC--CcccccccHHhhCcCCCCCceEE
Q 006874 381 EVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RKRTGLCSVWLAGLDPQQGIYIP 458 (628)
Q Consensus 381 d~l~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~--~~~~G~~S~~L~~l~~~~G~~v~ 458 (628)
|+|.+||++++|+++++..+|++++|+|||||+|..+++.++|+|++++|.++.+ +.+.|.||+||+++++ |+.|.
T Consensus 186 ~vl~~fps~~~p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~--Gd~v~ 263 (435)
T 1f20_A 186 EVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVP 263 (435)
T ss_dssp HHHHHSTTBCBCHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCT--TCEEE
T ss_pred HHHHhCCcCCCCHHHHHHhCCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCC--CCEEE
Confidence 9999999999999999999999999999999999655899999999999987643 4568999999999999 99999
Q ss_pred EEeec-CCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC--CCCCCCeEEEEcCCCCC-ccccHHHHHHhHhcCCC
Q 006874 459 AWFQK-GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGV 533 (628)
Q Consensus 459 i~~~~-g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~--~~~~~~~~L~~G~R~~~-d~ly~~el~~~~~~~g~ 533 (628)
+.+++ |.|.+| +..+|+||||+|||||||++|++++..... ....++++||||||+++ |++|++||++|.+. +.
T Consensus 264 v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~-~~ 342 (435)
T 1f20_A 264 CFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNK-GV 342 (435)
T ss_dssp EEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHT-TS
T ss_pred EEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHc-CC
Confidence 99965 599999 778999999999999999999999977420 01138999999999998 99999999999988 65
Q ss_pred cccCCCCcEEEEEecCCCC-ccchhhhHHHc-HHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHH
Q 006874 534 FSEAKGGGFYVAFSRKQPQ-KVYVQHKMLEQ-SQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 610 (628)
Q Consensus 534 l~~~~~~~~~~a~Sr~~~~-k~yVqd~l~~~-~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~ 610 (628)
+. +++++|||++.. ++||||+|.++ .+.+++++. +++.||||||+ .|+++|.++|.+++.++++++.++|+
T Consensus 343 ~~-----~l~~a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~-~M~~~V~~~L~~i~~~~~~~~~~~a~ 416 (435)
T 1f20_A 343 FR-----ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAG 416 (435)
T ss_dssp EE-----EEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECH-HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cc-----EEEEEECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCCh-hHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 54 899999998764 89999999988 888888884 58999999998 89999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEeecC
Q 006874 611 NWLKALQRAGRYHVEAWS 628 (628)
Q Consensus 611 ~~l~~l~~~~Ry~~dvws 628 (628)
+|+++|+++|||++|||+
T Consensus 417 ~~~~~l~~~~RY~~Dv~~ 434 (435)
T 1f20_A 417 VFISRLRDDNRYHEDIFG 434 (435)
T ss_dssp HHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHCCCEEEEecC
Confidence 999999999999999997
No 8
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=100.00 E-value=1.7e-72 Score=601.82 Aligned_cols=361 Identities=30% Similarity=0.519 Sum_probs=331.2
Q ss_pred cccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCC
Q 006874 228 AVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYL 306 (628)
Q Consensus 228 ~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~ 306 (628)
.++|. +|++|++||+++++++|+||+|++++++++|+|||+|+|+|+|+++.|+++|++||+++++.|++.
T Consensus 9 ~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~-------- 80 (374)
T 1ddg_A 9 DAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVE-------- 80 (374)
T ss_dssp TBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEET--------
T ss_pred CCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEEC--------
Confidence 44566 999999999999999999999999878899999999999999999999999999999999999873
Q ss_pred CcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhC
Q 006874 307 PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDF 386 (628)
Q Consensus 307 p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f 386 (628)
+ .++|++++|++|+||+ .|++.||+.||.||+|+. |++|++ +++.|.+|+. +++++|+|.+|
T Consensus 81 ~--------~~~tl~~~l~~~~di~--~p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~vl~~~ 142 (374)
T 1ddg_A 81 G--------KTLPLNEALQWHFELT--VNTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDMVRFS 142 (374)
T ss_dssp T--------EEEEHHHHHHHHBCCS--CCCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHHHHHS
T ss_pred C--------CCccHHHHHHhcccCC--CCCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHHHHHC
Confidence 1 6899999999999999 689999999999999974 888884 7788999986 68999999999
Q ss_pred CCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeec-C
Q 006874 387 PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-G 464 (628)
Q Consensus 387 ~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~-g 464 (628)
|+ +++.++++..++++++|+|||||+|..+++.++|+|++++|.+. ++.+.|.||+||++ +++ |++|.+.+++ |
T Consensus 143 p~-~~~~Gq~v~l~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~g 218 (374)
T 1ddg_A 143 PA-QLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEE--EGEVRVFIEHND 218 (374)
T ss_dssp CC-CCCHHHHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCS--SCEEEEEEECCT
T ss_pred CC-CCCHHHHHhhccCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCC--CCEEEEEEeeCC
Confidence 99 88888888888889999999999995558999999999999886 66688999999987 999 9999999966 5
Q ss_pred CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCC-CccccHHHHHHhHhcCCCcccCCCCcE
Q 006874 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGF 542 (628)
Q Consensus 465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~-~d~ly~~el~~~~~~~g~l~~~~~~~~ 542 (628)
.|.+| +..+|+||||+||||||||+|++++...+.. ++++||||||++ +|++|++||+++.+. +.+. ++
T Consensus 219 ~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~d~ly~~El~~~~~~-~~~~-----~l 289 (374)
T 1ddg_A 219 NFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GVLT-----RI 289 (374)
T ss_dssp TSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCHHHHCTTHHHHHHHHHT-TSCC-----EE
T ss_pred CccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCCchhhhhHHHHHHHHHHh-CCCc-----EE
Confidence 89999 7789999999999999999999999887644 899999999998 599999999999988 6554 89
Q ss_pred EEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCE
Q 006874 543 YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 622 (628)
Q Consensus 543 ~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry 622 (628)
+++|||++..++|||++|.++.+.+++++.+++.|||||++..|+++|.++|.++++++++++.++|++|+++|+++|||
T Consensus 290 ~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry 369 (374)
T 1ddg_A 290 DLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRY 369 (374)
T ss_dssp EEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCE
T ss_pred EEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCe
Confidence 99999998889999999999999999999889999999944499999999999999999999999999999999999999
Q ss_pred EEeec
Q 006874 623 HVEAW 627 (628)
Q Consensus 623 ~~dvw 627 (628)
++|||
T Consensus 370 ~~dv~ 374 (374)
T 1ddg_A 370 QRDVY 374 (374)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99999
No 9
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=2.8e-37 Score=321.62 Aligned_cols=265 Identities=26% Similarity=0.478 Sum_probs=219.7
Q ss_pred cee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCc
Q 006874 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD 308 (628)
Q Consensus 230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~ 308 (628)
++. +|+++++|++.++.+++++++|++++..+.|+||+++.|.++|..
T Consensus 21 ~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~------------------------------- 69 (304)
T 2bmw_A 21 PFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVD------------------------------- 69 (304)
T ss_dssp CEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBC-------------------------------
T ss_pred CEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCc-------------------------------
Confidence 344 999999999988999999999999855689999999999887421
Q ss_pred ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCC
Q 006874 309 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS 388 (628)
Q Consensus 309 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~ 388 (628)
..+
T Consensus 70 ---------------------~~g-------------------------------------------------------- 72 (304)
T 2bmw_A 70 ---------------------KNG-------------------------------------------------------- 72 (304)
T ss_dssp ---------------------TTS--------------------------------------------------------
T ss_pred ---------------------ccC--------------------------------------------------------
Confidence 000
Q ss_pred CCCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCC-CCcccccccHHhhCcCCCCCceEEEEeecC
Q 006874 389 VQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQGIYIPAWFQKG 464 (628)
Q Consensus 389 ~~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~-~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g 464 (628)
.+..+|+|||+|+|.. +++.++|+|+.+.|.++. +..+.|.+|+||+++++ |+.|.+.+|.|
T Consensus 73 ------------~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G 138 (304)
T 2bmw_A 73 ------------KPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP--GSEVKITGPVG 138 (304)
T ss_dssp ------------CBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCT--TCEEEEEEEEC
T ss_pred ------------CCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCC--CCEEEEEeccC
Confidence 0136899999999842 368999999988776542 33457999999999999 99999999999
Q ss_pred CC-CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC----CC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCC-Ccc
Q 006874 465 SL-PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS----SG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS 535 (628)
Q Consensus 465 ~F-~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~----~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~ 535 (628)
.| .+| +...|+||||+|||||||++|++++..... .. ..++++||||||+.+|++|.+||+++.+.++ ++
T Consensus 139 ~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~- 217 (304)
T 2bmw_A 139 KEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNF- 217 (304)
T ss_dssp SSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTE-
T ss_pred CceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcE-
Confidence 76 466 567899999999999999999998765420 00 1268999999999889999999999988754 56
Q ss_pred cCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHhC-CCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHH
Q 006874 536 EAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 610 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~ 610 (628)
++++++||+++ .+.|||+.+.++.+.+++++.. ++.||+|||+ .|+++|+++|.+++.+.| +. ++
T Consensus 218 -----~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~~~~~g-~~---~~ 287 (304)
T 2bmw_A 218 -----RLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAAAKEG-VT---WS 287 (304)
T ss_dssp -----EEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECT-THHHHHHHHHHHHHHTTT-CC---HH
T ss_pred -----EEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cc---HH
Confidence 89999999753 4789999999988888887755 7899999998 999999999999998654 44 57
Q ss_pred HHHHHHHHcCCEEEeec
Q 006874 611 NWLKALQRAGRYHVEAW 627 (628)
Q Consensus 611 ~~l~~l~~~~Ry~~dvw 627 (628)
.++++|+++|||++|+|
T Consensus 288 ~~~~~m~~~~ry~~e~~ 304 (304)
T 2bmw_A 288 DYQKDLKKAGRWHVETY 304 (304)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCeEEecC
Confidence 89999999999999999
No 10
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=4.8e-37 Score=320.85 Aligned_cols=211 Identities=27% Similarity=0.466 Sum_probs=185.0
Q ss_pred cccceeeccCCCC---CCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC-CC-CCCCCEEEE
Q 006874 404 KTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP-RP-PPSVPLILI 478 (628)
Q Consensus 404 ~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~-lp-~~~~piimI 478 (628)
.+|+|||+|+|.. +++.++|+|+++.|.+..++.+.|.||+||+++++ |+.|.+.+|.|.|. +| +...|+|||
T Consensus 87 ~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~~~~~~~~~~~vlI 164 (310)
T 3vo2_A 87 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GADVKITGPVGKEMLMPKDPNATVIML 164 (310)
T ss_dssp CCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCT--TCEEEEEEEECSTTCCBSCTTCEEEEE
T ss_pred cceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCC--CCEEEEEeccCCcccCCCCCCCCEEEE
Confidence 6899999999843 46899999999988887777778999999999999 99999999999765 56 567899999
Q ss_pred eCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCcEEEEEecCCC----
Q 006874 479 GPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFSRKQP---- 551 (628)
Q Consensus 479 a~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~~~~a~Sr~~~---- 551 (628)
|+|||||||++|++++....... ..++++||||||+.+|++|.+||+++.+.++ ++ ++++++||++.
T Consensus 165 agGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~------~v~~~~sr~~~~~~g 238 (310)
T 3vo2_A 165 ATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNF------RLDFAVSREQTNAAG 238 (310)
T ss_dssp EEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTE------EEEEEETTTCBCTTC
T ss_pred eCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCE------EEEEEECCCCCCCCC
Confidence 99999999999999987654211 1368999999999999999999999998754 67 89999999864
Q ss_pred CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006874 552 QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 552 ~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
.++|||+.+.+..+.+++++. +++.||+|||+ .|.++|+++|.+++.+.+ + +++.|+++|+++|||++|||
T Consensus 239 ~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp~-~M~~~v~~~L~~~~~~~g-~---~~~~~~~~l~~~~r~~~e~y 310 (310)
T 3vo2_A 239 EKMYIQTRMAEYREELWELLKKDNTYVYMCGLK-GMEKGIDDIMLNLAAKDG-I---DWMQYKKQLKKGEQWNVEVY 310 (310)
T ss_dssp CBCCHHHHHHTTHHHHHHHHTSTTEEEEEEEST-THHHHHHHHHHHHHHHTT-C---CHHHHHHHHHHTTSEEEEEC
T ss_pred cceehHHHHHHHHHHHHHhcccCCcEEEEeCCH-HHHHHHHHHHHHHHHHcC-c---CHHHHHHHHHHCCceEEecC
Confidence 578999999999889988886 48999999998 999999999999998775 3 47889999999999999999
No 11
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=3.3e-37 Score=322.67 Aligned_cols=263 Identities=25% Similarity=0.459 Sum_probs=221.1
Q ss_pred ee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCcc
Q 006874 231 FL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPDI 309 (628)
Q Consensus 231 ~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~~ 309 (628)
+. +|++++.+|+.++.+++++|+|+.++ .+.|+||+++.|.++|..
T Consensus 38 ~~~~V~~~~~lt~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~~~~~-------------------------------- 84 (314)
T 1fnb_A 38 YVGRCLLNTKITGDDAPGETWHMVFSHEG-EIPYREGQSVGVIPDGED-------------------------------- 84 (314)
T ss_dssp EEEEEEEEEECSCSSSSSCEEEEEEECTT-CCCCCTTCEEEEECSSBC--------------------------------
T ss_pred EEEEEEEEEEecCCCCCCcEEEEEEecCC-CCCcCCCCEEEEecCCCC--------------------------------
Confidence 44 99999999998888999999999884 489999999999876411
Q ss_pred cCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCCC
Q 006874 310 HKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSV 389 (628)
Q Consensus 310 ~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~~ 389 (628)
..+
T Consensus 85 --------------------~~g--------------------------------------------------------- 87 (314)
T 1fnb_A 85 --------------------KNG--------------------------------------------------------- 87 (314)
T ss_dssp --------------------TTS---------------------------------------------------------
T ss_pred --------------------cCC---------------------------------------------------------
Confidence 000
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCC
Q 006874 390 QMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 466 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F 466 (628)
.+..+|+|||+|+|.. +++.++|+|+.+.|.+..++.+.|.+|+||+++++ |+.|.+.+|.|.|
T Consensus 88 -----------~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~ 154 (314)
T 1fnb_A 88 -----------KPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKP--GAEVKLTGPVGKE 154 (314)
T ss_dssp -----------SBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCT--TCEEEEEEEECST
T ss_pred -----------CcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCC--CCEEEEEeccCCc
Confidence 0237899999999842 36899999998888876666678999999999999 9999999999986
Q ss_pred C-CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCCCCc
Q 006874 467 P-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGG 541 (628)
Q Consensus 467 ~-lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~~~~ 541 (628)
. +| +...|+||||+|||||||++|++++......+ ..++++||||||+++|++|.+||+++.+.++ ++ +
T Consensus 155 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~------~ 228 (314)
T 1fnb_A 155 MLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNF------R 228 (314)
T ss_dssp TCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTE------E
T ss_pred eeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcE------E
Confidence 4 56 45789999999999999999999987653210 1268999999999999999999999988744 57 8
Q ss_pred EEEEEecCCC----CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006874 542 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL 616 (628)
Q Consensus 542 ~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l 616 (628)
+++++||+++ .++|||++|.+..+.+++.+. .++.||+|||+ .|+++|+++|.+++.+.+ . ++++++++|
T Consensus 229 ~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~~~~~g-~---~~~~~~~~l 303 (314)
T 1fnb_A 229 LDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAAEG-I---DWIEYKRQL 303 (314)
T ss_dssp EEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEECT-THHHHHHHHHHHHHHTTT-C---CHHHHHHHH
T ss_pred EEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECCH-HHHHHHHHHHHHHHHHhC-c---hHHHHHHHH
Confidence 9999999754 478999999988778777775 58899999998 999999999999988765 3 468999999
Q ss_pred HHcCCEEEeec
Q 006874 617 QRAGRYHVEAW 627 (628)
Q Consensus 617 ~~~~Ry~~dvw 627 (628)
+++|||++|+|
T Consensus 304 ~~~~r~~~d~~ 314 (314)
T 1fnb_A 304 KKAEQWNVEVY 314 (314)
T ss_dssp HHTTCEEEEEC
T ss_pred HHCCcEEEecC
Confidence 99999999999
No 12
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=4.2e-36 Score=324.23 Aligned_cols=265 Identities=25% Similarity=0.427 Sum_probs=221.8
Q ss_pred cee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCccCCCCc
Q 006874 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMKNYLPD 308 (628)
Q Consensus 230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~~~~p~ 308 (628)
.+. +|+++++++++++.+++++|+|+.++..+.|+||+++.|.+++..
T Consensus 122 ~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~------------------------------- 170 (402)
T 2b5o_A 122 PFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGED------------------------------- 170 (402)
T ss_dssp CEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEE-------------------------------
T ss_pred CEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCC-------------------------------
Confidence 455 999999999988889999999998844589999999999876311
Q ss_pred ccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHhhhCCC
Q 006874 309 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS 388 (628)
Q Consensus 309 ~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l~~f~~ 388 (628)
..+
T Consensus 171 ---------------------~~g-------------------------------------------------------- 173 (402)
T 2b5o_A 171 ---------------------KNG-------------------------------------------------------- 173 (402)
T ss_dssp ---------------------TTT--------------------------------------------------------
T ss_pred ---------------------cCC--------------------------------------------------------
Confidence 000
Q ss_pred CCCCHHHHHHhcCCCcccceeeccCCCC---CCCeEEEEEEEEEeecCC-CCcccccccHHhhCcCCCCC-ceEEEEeec
Q 006874 389 VQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQG-IYIPAWFQK 463 (628)
Q Consensus 389 ~~~p~~~l~~~lp~~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~-~~~~~G~~S~~L~~l~~~~G-~~v~i~~~~ 463 (628)
.+..+|+|||+|+|.. +++.++|+|+++.|.++. ++.+.|.||+||+++++ | +.|.+.+|.
T Consensus 174 ------------~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~--G~d~v~v~gP~ 239 (402)
T 2b5o_A 174 ------------KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPV--GTDDVKITGPV 239 (402)
T ss_dssp ------------EECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCT--TCCCEEEEEEE
T ss_pred ------------CccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCC--CCceEEEEccc
Confidence 0137899999999842 268999999988887632 33468999999999999 9 999999999
Q ss_pred CCC-CCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHhcCC-CcccCC
Q 006874 464 GSL-PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAK 538 (628)
Q Consensus 464 g~F-~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~~~~ 538 (628)
|.| .+| +...|+||||+|||||||++|++++......+ ..++++||||||+.+|++|.+||+++.+.++ ++
T Consensus 240 G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~---- 315 (402)
T 2b5o_A 240 GKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNF---- 315 (402)
T ss_dssp CSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTE----
T ss_pred CCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcE----
Confidence 986 566 56789999999999999999999987654211 1378999999999999999999999988755 67
Q ss_pred CCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006874 539 GGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL 613 (628)
Q Consensus 539 ~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l 613 (628)
++++++||+++ .++|||++|.+..+.+++++. .++.||+|||+ .|.++|.++|.+++...+. .++.++
T Consensus 316 --~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP~-~M~~~v~~~L~~~g~~~g~----~~~~~~ 388 (402)
T 2b5o_A 316 --RLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLK-GMQPPIDETFTAEAEKRGL----NWEEMR 388 (402)
T ss_dssp --EEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECG-GGHHHHHHHHHHHHHHTTC----CHHHHH
T ss_pred --EEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECCH-HHHHHHHHHHHHHHHHcCc----hHHHHH
Confidence 89999999753 478999999998888888885 48899999998 9999999999999988764 467899
Q ss_pred HHHHHcCCEEEeec
Q 006874 614 KALQRAGRYHVEAW 627 (628)
Q Consensus 614 ~~l~~~~Ry~~dvw 627 (628)
++|+++|||++|+|
T Consensus 389 ~~m~~~~Ry~~e~~ 402 (402)
T 2b5o_A 389 RSMKKEHRWHVEVY 402 (402)
T ss_dssp HHHHHTTCEEEEEC
T ss_pred HHHHHCCCEEEecC
Confidence 99999999999999
No 13
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=9.1e-35 Score=304.06 Aligned_cols=211 Identities=20% Similarity=0.342 Sum_probs=173.1
Q ss_pred CcccceeeccCCCC---CCCeEEEEEEEEEeecCCCCc-ccccccHHhhCcCCCCCceEEEEeecCCCC-CCC--CCCCE
Q 006874 403 LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRK-RTGLCSVWLAGLDPQQGIYIPAWFQKGSLP-RPP--PSVPL 475 (628)
Q Consensus 403 ~~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~-~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~-lp~--~~~pi 475 (628)
+.+|+|||+|+|.. +++.++|+|+++.|.+..++. +.|.+|+||+++++ |+.|.+.+|.|.|. +|+ ...|+
T Consensus 91 ~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~~~~~~~~~~~~ 168 (314)
T 2rc5_A 91 YTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKP--GDEVTMTGPSGKKFLLPNTDFSGDI 168 (314)
T ss_dssp CCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCT--TCEEEEEEEECSSSCCCSSCBCSCE
T ss_pred CCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCC--cCEEEEEeccCCceeCCCCCCCCCE
Confidence 58899999999841 468999999887666543433 57999999999999 99999999999875 443 47899
Q ss_pred EEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC----
Q 006874 476 ILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP---- 551 (628)
Q Consensus 476 imIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~---- 551 (628)
||||+|||||||++|++++.........++++||||||+++|++|.+||+++.+.++++ ++++++||++.
T Consensus 169 vlIagGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~ 242 (314)
T 2rc5_A 169 MFLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNF------KLITAISREEKNSFD 242 (314)
T ss_dssp EEEEEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSE------EEEEEETTTCBCTTT
T ss_pred EEEECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcE------EEEEEECCCCCcccC
Confidence 99999999999999999997653211126899999999999999999999998764677 89999999743
Q ss_pred -CccchhhhHHHcHHHHHHHHhCCCEEEEe-CCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCEEEeec
Q 006874 552 -QKVYVQHKMLEQSQRIWNLLLSKASIYVA-GSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 552 -~k~yVqd~l~~~~~~v~~~l~~~~~iyvC-G~~~~M~~~v~~~L~~il~~~~~~~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
.++|||+++.+..+.+++++.+...+||| ||+ .|+++|+++|.++.. .++ .++.|+.+|+++|||++|+|
T Consensus 243 g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp~-~m~~~v~~~L~~~g~--~~i---~~e~f~~~l~~~gr~~~e~~ 314 (314)
T 2rc5_A 243 GGRMYISHRVREQAEAVKKILNGGGRFYICGGPK-GMEKGVIEEIQKISG--NTG---TYEEFKHHLEGAHQLFVETY 314 (314)
T ss_dssp SSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESST-TTHHHHHHHHHHHHT--CCS---CHHHHHHHHHHTTCEEEEEC
T ss_pred CCceehhHHHHHhHHHHHHHhhcCCeEEEeCCcH-HHHHHHHHHHHHHHh--ccc---hHHHHHHHHHHCCCEEEecC
Confidence 46899999999888887777443345999 887 999999999999764 233 35789999999999999999
No 14
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=4.8e-35 Score=305.80 Aligned_cols=224 Identities=29% Similarity=0.429 Sum_probs=187.3
Q ss_pred CCHHHHHHhcCCC---------cccceeeccCCCC---CCCeEEEEEEEEEeecCCCC----cccccccHHhhCcCCCCC
Q 006874 391 MPIDWLVQLVPPL---------KTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKR----KRTGLCSVWLAGLDPQQG 454 (628)
Q Consensus 391 ~p~~~l~~~lp~~---------~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~----~~~G~~S~~L~~l~~~~G 454 (628)
.||||+...+|.. .+|+|||+|+|.. +++.++|+|+++.|.++... .+.|.+|+||+++++ |
T Consensus 62 ~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--G 139 (311)
T 3lo8_A 62 WEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKP--G 139 (311)
T ss_dssp CTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCT--T
T ss_pred cCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCC--c
Confidence 4788887777753 6899999999843 25899999987655433211 267999999999999 9
Q ss_pred ceEEEEeecCCCCC-C--CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCccccHHHHHHhHh
Q 006874 455 IYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSL 529 (628)
Q Consensus 455 ~~v~i~~~~g~F~l-p--~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~el~~~~~ 529 (628)
++|.+.+|.|.|.+ | +...|+||||+|||||||++|++++......+ ..++++||||||+.+|++|.+||+++.+
T Consensus 140 d~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~ 219 (311)
T 3lo8_A 140 DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLK 219 (311)
T ss_dssp CEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHH
T ss_pred CEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHH
Confidence 99999999998764 4 26789999999999999999999988754311 1267999999999999999999999998
Q ss_pred cCC-CcccCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCC
Q 006874 530 NDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA 604 (628)
Q Consensus 530 ~~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~ 604 (628)
.++ ++ ++++++||++. .++||++.+.+..+.+++++.+++.||+|||+ .|+++|+++|.+++.+.+
T Consensus 220 ~~~~~~------~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~~~~~g-- 290 (311)
T 3lo8_A 220 QYPDNF------RYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMPGIQDTLKKVAERRG-- 290 (311)
T ss_dssp HCTTTE------EEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEECG-GGHHHHHHHHHHHHHHTT--
T ss_pred hCCCcE------EEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECCH-HHHHHHHHHHHHHHHhcc--
Confidence 744 67 89999999864 47999999999988888888789999999998 999999999999998765
Q ss_pred CHHHHHHHHHHHHHcCCEEEeec
Q 006874 605 SRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 605 ~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
+++++|+++|+++|||++|+|
T Consensus 291 --~~~~~~~~~l~~~~ry~~e~y 311 (311)
T 3lo8_A 291 --ESWDQKLAQLKKNKQWHVEVY 311 (311)
T ss_dssp --CCHHHHHHHHHHTTCEEEEEC
T ss_pred --HHHHHHHHHHHHCCcEEEecC
Confidence 357899999999999999999
No 15
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=9.9e-34 Score=296.35 Aligned_cols=287 Identities=20% Similarity=0.281 Sum_probs=207.7
Q ss_pred CCCcccee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCCCHHHHHHHHHHcCCCCCceEEEeecCcc
Q 006874 225 NNKAVCFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQDPAAVDTFIQRCNLDPDALITVQHKEMK 303 (628)
Q Consensus 225 ~~~~~~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~v~~~~~~~~ 303 (628)
+...+++. +|+++.+|+.++...+|+||+|+.+ ..+.|.+|+.++|.|+..+.. .+.+.+
T Consensus 10 ~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~GQ~~~i~~~~~~~~------------------~~~~~~ 70 (316)
T 3jqq_A 10 YTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHN-GLFKYLEGHTCGIIPYYNELD------------------NNPNNQ 70 (316)
T ss_dssp SCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECT-TCCCCCTTCEEEECTTCC---------------------------
T ss_pred ecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCC-CCcceecCcEeEEECCCcccc------------------cccccc
Confidence 44555677 9999999999998999999999997 579999999999999864421 000000
Q ss_pred CCCCcccCCCccccccHHHHHHhccccCcCCCCHHHHHHHHhhcCChhHHHHHHhhcCccCHHHHHHHHHcCCCCHhhHh
Q 006874 304 NYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVL 383 (628)
Q Consensus 304 ~~~p~~~~~~~~~~~tl~~~l~~~~Dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~d~l 383 (628)
+..| . .++-++ +.+. ...++
T Consensus 71 ~~~~--------~---------~~~~~~-------------~~~~-------------------h~~~~----------- 90 (316)
T 3jqq_A 71 INKD--------H---------NIINTT-------------NHTN-------------------HNNIA----------- 90 (316)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc--------c---------cccccc-------------cccc-------------------ccccc-----------
Confidence 0000 0 000000 0000 00000
Q ss_pred hhCCCCCCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecC---CCCcccccccHHhhCcCCCCCceEEEE
Q 006874 384 EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP---YKRKRTGLCSVWLAGLDPQQGIYIPAW 460 (628)
Q Consensus 384 ~~f~~~~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~---~~~~~~G~~S~~L~~l~~~~G~~v~i~ 460 (628)
....-+...+|+|||||+| ..+.++|+|+++.|.+. .++.+.|.||+||+++++ |++|.+.
T Consensus 91 ------------~~~~~g~~~~R~ySIaS~p--~~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~ 154 (316)
T 3jqq_A 91 ------------LSHIKKQRCARLYSISSSN--NMENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKI--NDDIYLT 154 (316)
T ss_dssp ------------------CCCCEEEEBCSCT--TSSSEEEEEECCBC---------CCBCHHHHHHHTCCT--TCEEEEE
T ss_pred ------------cccCCCcccceeeecccCC--CCCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCC--CCEEEEE
Confidence 0001134589999999998 34789999998877643 234578999999999999 9999999
Q ss_pred eecCCCCCC-C---CCCCEEEEeCCCChHHHHHHHHHHHHhcCC-------CCCCCeEEEEcCCCCCccccHHHHHHhHh
Q 006874 461 FQKGSLPRP-P---PSVPLILIGPGTGCAPFRGFVEERAIQSSS-------GPAAPIIFFFGCRNEDDFLYRELWLSHSL 529 (628)
Q Consensus 461 ~~~g~F~lp-~---~~~piimIa~GtGIAPfrs~l~~~~~~~~~-------~~~~~~~L~~G~R~~~d~ly~~el~~~~~ 529 (628)
+|.|.|.++ + ...|+||||+|||||||++|++++...... ...++++||||||+++|++|.+||+++.+
T Consensus 155 gP~G~f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~ 234 (316)
T 3jqq_A 155 GAHGYFNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQK 234 (316)
T ss_dssp EEECCCCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHH
T ss_pred ecCCceEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHH
Confidence 999999998 4 378999999999999999999999865310 02378999999999999999999999988
Q ss_pred cCC-CcccCCCCcEEEEEecCCC---CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCC
Q 006874 530 NDG-VFSEAKGGGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEA 604 (628)
Q Consensus 530 ~~g-~l~~~~~~~~~~a~Sr~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~ 604 (628)
.++ ++ ++++++||++. .++|||+.+.+..+.+++++. .++.||+|||+ .|.++++++|.+ .+.+
T Consensus 235 ~~~~~~------~~~~~~s~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~-~m~~~v~~~l~~----~G~~ 303 (316)
T 3jqq_A 235 MYPNNI------NIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKK-SIRYKVMDILKS----HDQF 303 (316)
T ss_dssp HCTTTE------EEEEEEGGGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECS-THHHHHHHHHHC--------
T ss_pred hCCCcE------EEEEEECCCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCH-HHHHHHHHHHHH----cCCC
Confidence 754 67 89999999854 589999999999888888875 49999999998 999887766654 3433
Q ss_pred CHHHHHHHHHHHHHcCCEEEeec
Q 006874 605 SRDSAANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 605 ~~~~a~~~l~~l~~~~Ry~~dvw 627 (628)
+. ...+|++.|+|
T Consensus 304 ~~----------v~~~rih~E~f 316 (316)
T 3jqq_A 304 DE----------KKKKRVHVEVY 316 (316)
T ss_dssp CH----------HHHTTEEEEEC
T ss_pred cc----------cccccEEEEeC
Confidence 33 34578999886
No 16
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.98 E-value=1.6e-32 Score=268.95 Aligned_cols=151 Identities=31% Similarity=0.473 Sum_probs=141.4
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
..++++|+|||+|||||++|+.|++.+ +.|+.+++++++++++++|.+++.+||++||||+|++|+|+..|+++|....
T Consensus 39 ~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~L~~~~ 117 (219)
T 3hr4_A 39 SRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGDCPGNGEKLKKSLFMLK 117 (219)
T ss_dssp TSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGGTCSEEEEEEECBTTTBCCGGGHHHHHHHHHCC
T ss_pred cCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhccCCeEEEEEeccCCCcCCHHHHHHHHHHHhcc
Confidence 467899999999999999999999998 5789999999999998899999999999999999999999999999997642
Q ss_pred CcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006874 85 LSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP 161 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~ 161 (628)
..++|++|||||+||++|++||.+++.++++|+++||+++.|++++|++. +.+++|+.|.+.+|++|.+.++
T Consensus 118 ---~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~~g~~D~~~--~~e~~~~~W~~~l~~~l~~~~~ 189 (219)
T 3hr4_A 118 ---ELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTPMGEGDELS--GQEDAFRSWAVQTFKAACETFD 189 (219)
T ss_dssp ---CCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSCCEEEETTS--CHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---hhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeCCEEEecCC--CcHHHHHHHHHHHHHHHHHHcC
Confidence 23789999999999999999999999999999999999999999999974 4899999999999999999988
No 17
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.95 E-value=1e-27 Score=231.97 Aligned_cols=147 Identities=31% Similarity=0.565 Sum_probs=132.4
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
.+++++|+|+|+||||+++|+.|++.|.+.|+.+++.+++++. .++..++.+||++||| +|++|+++..|+++|....
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~-~~l~~~d~vi~g~~Ty-~G~~p~~~~~fl~~L~~~~ 97 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA-GNLPREGAVLIVTASY-NGHPPDNAKQFVDWLDQAS 97 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST-TCCCSSSEEEEEECCB-TTBCCTTTHHHHHHHHTCC
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh-hhhhhCCeEEEEEeec-CCCcCHHHHHHHHHHHhcc
Confidence 5788999999999999999999999999999999999999863 4788999999999999 9999999999999997643
Q ss_pred CcccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006874 85 LSKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
. ..|+|++|+|||+||++|+ +||.+++.++++|+++||+++.+.+++|.. .+.+..+++|.+.||+.|.
T Consensus 98 ~--~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~~d~~--~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 98 A--DEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGEADAS--DDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp S--SCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEEEETT--SCHHHHHHHHHHHHHHHHH
T ss_pred c--hhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEEEecC--CChHHHHHHHHHHHHHHhc
Confidence 2 2388999999999999995 999999999999999999999999999982 3366669999999999996
No 18
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.94 E-value=3.2e-27 Score=224.09 Aligned_cols=152 Identities=30% Similarity=0.473 Sum_probs=133.9
Q ss_pred cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006874 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~ 83 (628)
.+|++++|+|+|+||||+++|+.|++.+.+.|+.+++.++++++..++.+++.|||++||||.|++|+++..|+++|...
T Consensus 7 ~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~ 86 (167)
T 1ykg_A 7 AEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSK 86 (167)
T ss_dssp -----CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTST
T ss_pred CCCCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCHHHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhc
Confidence 35789999999999999999999999999989999999999988888889999999999999999999999999998653
Q ss_pred cCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006874 84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP 161 (628)
Q Consensus 84 ~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~ 161 (628)
..+ .+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+|. +.++.+++|.+++++.|.+.++
T Consensus 87 ~~~--~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~~~d~----~~~~~~~~w~~~l~~~l~~~~~ 158 (167)
T 1ykg_A 87 KAP--KLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV----EYQAAASEWRARVVDALKSRAP 158 (167)
T ss_dssp TCC--CCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCEEECT----TCHHHHHHHHHHHHHHHHTCC-
T ss_pred ccc--ccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecceecCC----CcHHHHHHHHHHHHHHHHhhcC
Confidence 212 38899999999999999999999999999999999999999888883 3788999999999999976554
No 19
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.94 E-value=1e-27 Score=222.52 Aligned_cols=146 Identities=24% Similarity=0.309 Sum_probs=132.6
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
|++++|+|+|+||||+++|+.|++.+.+.|+.+.+++.. +..++.+++.+||++||||.|++|+++..|+++|....
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~--~~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~- 77 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP--LLEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQK- 77 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT--TSCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHC-
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC--CHHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhc-
Confidence 578999999999999999999999999999998888765 35578889999999999999999999999999997531
Q ss_pred cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006874 86 SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
+ .+++++|+|||+||++|++||.+++.++++|+++|++++.+.+.+|..++++.++.+++|.+++++.|
T Consensus 78 ~--~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 78 P--DLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp C--CTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCCCCSSCCSSCSCCHHHHHHHHHHH
T ss_pred c--ccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEEecCCCCCcHHHHHHHHHHHHHHh
Confidence 1 27899999999999999999999999999999999999999999998876678999999999999876
No 20
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.94 E-value=1.4e-26 Score=234.01 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=150.8
Q ss_pred CCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006874 391 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 391 ~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g~F~l 468 (628)
.|||++...+|. ..+|+|||+|+| ...+.++|+| +....|.+|+||. ++++ |++|.+.+|.|.|.+
T Consensus 45 ~pGQ~v~l~~~~~~~~R~ySi~s~~-~~~~~l~i~v---------k~~~~G~~s~~l~~~l~~--Gd~v~v~gP~G~~~~ 112 (250)
T 1tvc_A 45 EPGQFMDLTIPGTDVSRSYSPANLP-NPEGRLEFLI---------RVLPEGRFSDYLRNDARV--GQVLSVKGPLGVFGL 112 (250)
T ss_dssp CSCCEEEECTTSCSSSEEECCBCCS-SSSCCEEEEE---------CCCTTSSSHHHHHHHSSS--SSEEEEEEEECCCSC
T ss_pred CCCcEEEEEeCCCccccccccCCCC-CCCCeEEEEE---------EECCCCCchHHHHhcCCC--CCEEEEEcCcccccc
Confidence 689998888886 578999999998 3468899999 4445699999995 8999 999999999999998
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006874 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+ +...++||||+|||||||+++++++...+.. .+++|+||+|+.+|++|.+||+++.+.++++ +++.++|
T Consensus 113 ~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~s 183 (250)
T 1tvc_A 113 KERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAP---NETRIYFGVNTEPELFYIDELKSLERSMRNL------TVKACVW 183 (250)
T ss_dssp CCCSSSCEEEEEESSTTHHHHHHHHHHHHHTCC---SCEEEEEECSSSTTCCCHHHHHHHHHHSSSC------EEEECCS
T ss_pred CccCCceEEEEEeccCHHHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHhhhHHHHHHHHHhCCCe------EEEEEec
Confidence 8 5558999999999999999999999876533 7899999999999999999999998765777 8888999
Q ss_pred cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
|+++ .++||++.+.+.... ...++.+|+|||+ .|.++|++.|.+
T Consensus 184 ~~~~~~~g~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~v~~~l~~ 231 (250)
T 1tvc_A 184 HPSGDWEGEQGSPIDALREDLES----SDANPDIYLCGPP-GMIDAACELVRS 231 (250)
T ss_dssp SCSSCCSSSSSSSSHHHHHHHHH----SSSSSEEEEESSH-HHHHHHHHHHHH
T ss_pred cCCCCcCCccceehHHHHhhhhc----ccCCcEEEEeCCH-HHHHHHHHHHHH
Confidence 8533 478999887743211 1247899999998 999998887764
No 21
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.93 E-value=2e-26 Score=213.91 Aligned_cols=144 Identities=24% Similarity=0.327 Sum_probs=132.4
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCC-CCCeEEEEEecCCC--CCCChhHHHHHHHHHh
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP-EEDTVIFVVSTTGQ--GDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~-~~~~vi~~~sT~g~--G~~p~~~~~F~~~L~~ 82 (628)
|++++|+|+|+||||+++|+.|++.+.+.|++++++++++++..++. +++.+||++||||. |.+|++++.|+++|..
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~ 80 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDR 80 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGG
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhc
Confidence 57899999999999999999999999999999999999999888999 99999999999988 9999999999998864
Q ss_pred ccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHH
Q 006874 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRR 155 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~ 155 (628)
.. +++++++|||+||++|++||.+++.+++.|+++|++++.+.+.++..+++ ..+.+++|.++|+++
T Consensus 81 ~~-----l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 81 IG-----LAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKMEGDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp TC-----CTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEEESSGGG-CHHHHHHHHHHHHHT
T ss_pred cC-----CCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEeecCcch-HHHHHHHHHHHHHhh
Confidence 32 78999999999999999999999999999999999999998999988666 788888999888764
No 22
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.93 E-value=2.7e-26 Score=236.85 Aligned_cols=180 Identities=20% Similarity=0.337 Sum_probs=141.5
Q ss_pred CcccceeeccCCCCCCCeEEEEEEEEEe--ecC----CCCcccccccHHhhCcCCCCCceEEEEeecCCCCCCCCCCCEE
Q 006874 403 LKTRAFSISSSPLAHPNQVHLTVSVVSW--TTP----YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLI 476 (628)
Q Consensus 403 ~~~R~YSIaSsp~~~~~~i~l~V~~v~~--~~~----~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~lp~~~~pii 476 (628)
..+|+|||+|+| ...+.++|+|+++.. .+. .++.+.|.+|+||+++++ |++|.+.+|.|.|.+++...|+|
T Consensus 84 ~~~R~ySi~s~~-~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~--Gd~v~v~gP~G~f~~~~~~~~~v 160 (290)
T 2r6h_A 84 ETVRAYSMANYP-AEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKP--GDKVMMSGPYGDFHIQDTDAEML 160 (290)
T ss_dssp CEEEEEECCSCT-TCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCT--TCEEEEEEEECCCCCCSSSCEEE
T ss_pred CcceeeeccCCC-CCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCC--CCEEEEEecccCCcCCCCCCeEE
Confidence 468999999998 456899999975321 110 012457999999999999 99999999999999886678999
Q ss_pred EEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCC-----
Q 006874 477 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----- 551 (628)
Q Consensus 477 mIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~----- 551 (628)
|||+|||||||++|++++...... ..+++||||+|+.+|++|.+||+++.+.++++ ++++++||++.
T Consensus 161 liagGtGitP~~s~l~~~~~~~~~--~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~ 232 (290)
T 2r6h_A 161 YIGGGAGMAPLRAQILHLFRTLKT--GRKVSYWYGARSKNEIFYEEDFREIEREFPNF------KFHIALSDPQPEDNWT 232 (290)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTSCC--CSCEEEEEEESSGGGCCSHHHHHHHHHHCTTE------EEEEEESSCCGGGCCC
T ss_pred EEECccCHHHHHHHHHHHHHhcCC--CCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCe------EEEEEEccCCcccCCC
Confidence 999999999999999988765321 27899999999999999999999998765777 89999998642
Q ss_pred -CccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 552 -QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 552 -~k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
.++||++.+.+.. +.++. ..++.+|+|||+ .|.++|++.|.+
T Consensus 233 g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~ 276 (290)
T 2r6h_A 233 GYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGPG-PMANAVKGMLEN 276 (290)
T ss_dssp SCBSCHHHHHHHHT--TTTCSCGGGEEEEEECCH-HHHHHHHHHHHH
T ss_pred CeeEecCHHHHHhH--HhhccCcCCcEEEEECCH-HHHHHHHHHHHH
Confidence 3678988764321 10001 136789999998 999999888765
No 23
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.93 E-value=1.7e-26 Score=230.53 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=144.9
Q ss_pred CCCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHH-hhCcCCCCCceEEEEeecCCCCC
Q 006874 390 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW-LAGLDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 390 ~~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~-L~~l~~~~G~~v~i~~~~g~F~l 468 (628)
..|||++...+|....|+|||+|+| ..++.++|+|++ ...|.+|++ +.++++ |++|.+.+|.|.|.+
T Consensus 30 ~~pGq~v~l~~~~~~~R~ySi~s~~-~~~~~l~l~i~~---------~~~G~~s~~~~~~l~~--Gd~v~v~gP~G~~~~ 97 (232)
T 1qfj_A 30 FRAGQYLMVVMDERDKRPFSMASTP-DEKGFIELHIGA---------SEINLYAKAVMDRILK--DHQIVVDIPHGEAWL 97 (232)
T ss_dssp CCTTCEEEEESSSSCEEEEECCSCT-TSTTCEEEEEC---------------CCHHHHHHHHH--HSEEEEEEEECSCCC
T ss_pred cCCCCEEEEECCCCceeeeecCCCC-CCCCcEEEEEEE---------ccCCchhHHHHHhCCC--CCEEEEeCCccceEe
Confidence 3689999888888889999999998 356789999943 345666665 678999 999999999999998
Q ss_pred C-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006874 469 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 469 p-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
+ +...++||||+|||||||+++++++...+.. .+++|+||+|+.+|++|.+||+++.+.++++ +++.++|
T Consensus 98 ~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~s 168 (232)
T 1qfj_A 98 RDDEERPMILIAGGTGFSYARSILLTALARNPN---RDITIYWGGREEQHLYDLCELEALSLKHPGL------QVVPVVE 168 (232)
T ss_dssp CSCSSSCEEEEEETTCHHHHHHHHHHHHHHCTT---CCEEEEEEESSGGGCTTHHHHHHHHHHCTTE------EEEEEES
T ss_pred CCCCCCcEEEEEecccHhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhhhHHHHHHHHHHCCCe------EEEEEEc
Confidence 8 5578999999999999999999999876533 7899999999999999999999998766777 8999999
Q ss_pred cCCC----CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHH
Q 006874 548 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF 594 (628)
Q Consensus 548 r~~~----~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L 594 (628)
++++ .++||++.+.+... + ..++.+|+|||+ .|.+++++.|
T Consensus 169 ~~~~~~~g~~g~v~~~~~~~~~---~--~~~~~vyvCGp~-~m~~~v~~~l 213 (232)
T 1qfj_A 169 QPEAGWRGRTGTVLTAVLQDHG---T--LAEHDIYIAGRF-EMAKIARDLF 213 (232)
T ss_dssp SCCTTCCSEESCHHHHHHHHCS---C--CTTCEEEEESCH-HHHHHHHHHH
T ss_pred CCCCCcCCceeeHHHHHHHhcC---C--ccccEEEEECCH-HHHHHHHHHH
Confidence 8654 36788887665310 0 137899999998 8999888777
No 24
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.93 E-value=3.6e-26 Score=230.45 Aligned_cols=184 Identities=16% Similarity=0.173 Sum_probs=148.8
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCC
Q 006874 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~ 465 (628)
..|||++...+|. ...|+|||+|+|. .+.++|+|+. .+.|.+|+||+++++ |++|.+. +|.|.
T Consensus 31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~ 97 (248)
T 1fdr_A 31 FTAGQFTKLGLEIDGERVQRAYSYVNSPD--NPDLEFYLVT---------VPDGKLSPRLAALKP--GDEVQVVSEAAGF 97 (248)
T ss_dssp CCTTCEEEEEECC---CEEEEEECCSCTT--CSSEEEEEEC---------CTTCSSHHHHHTCCT--TCEEEEESSCBCC
T ss_pred cCCCCcEEEEccCCCCeeeeeecccCCCC--CCcEEEEEEE---------eCCCchhhHHHhCCC--cCEEEEecCCcce
Confidence 3689998888873 4689999999983 4789999843 356999999999999 9999999 99999
Q ss_pred CCCC-CC-CCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcC-CCcccCCCCcE
Q 006874 466 LPRP-PP-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGF 542 (628)
Q Consensus 466 F~lp-~~-~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~-g~l~~~~~~~~ 542 (628)
|.++ .. ..++||||+|||||||+++++++...+. ..+++|+||+|+.+|++|.+||+++.+.+ +++ ++
T Consensus 98 f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~---~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~------~~ 168 (248)
T 1fdr_A 98 FVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDR---FKNLVLVHAARYAADLSYLPLMQELEKRYEGKL------RI 168 (248)
T ss_dssp CSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCTT---CSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSE------EE
T ss_pred eEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhCC---CCcEEEEEEcCCHHHhhHHHHHHHHHHhCcCcE------EE
Confidence 9988 43 6899999999999999999998755432 27899999999999999999999998764 467 88
Q ss_pred EEEEecCCC---CccchhhhHHHcH-HHHHHH-H-hCCCEEEEeCCCCCCHHHHHHHH-HH
Q 006874 543 YVAFSRKQP---QKVYVQHKMLEQS-QRIWNL-L-LSKASIYVAGSATKMPSDVWSTF-EE 596 (628)
Q Consensus 543 ~~a~Sr~~~---~k~yVqd~l~~~~-~~v~~~-l-~~~~~iyvCG~~~~M~~~v~~~L-~~ 596 (628)
+.++|+++. .+++|++.+.+.. +....+ . ..++.+|+|||+ .|.++|++.| .+
T Consensus 169 ~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~-~m~~~v~~~l~~~ 228 (248)
T 1fdr_A 169 QTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNP-QMVRDTQQLLKET 228 (248)
T ss_dssp EEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECH-HHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCH-HHHHHHHHHHHHH
Confidence 899999764 3689999887642 222111 1 237899999998 9999998887 54
No 25
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.92 E-value=4.4e-26 Score=229.16 Aligned_cols=179 Identities=18% Similarity=0.207 Sum_probs=146.1
Q ss_pred CCHHHHHHhcC--C-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC
Q 006874 391 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 391 ~p~~~l~~~lp--~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 467 (628)
.|||++...+| . ...|+|||+|+| .+.+.++|+|+ +...|.+|+||+++++ |++|.+.+|.|.|.
T Consensus 43 ~pGq~v~l~~~~~g~~~~R~ysi~s~~-~~~~~~~l~vk---------~~~~G~~S~~l~~l~~--Gd~v~v~gP~G~f~ 110 (243)
T 2eix_A 43 PIGQHMSVKATVDGKEIYRPYTPVSSD-DEKGYFDLIIK---------VYEKGQMSQYIDHLNP--GDFLQVRGPKGQFD 110 (243)
T ss_dssp CTTCEEEEEEEETTEEEEEEECCCSCT-TCCSEEEEEEE---------CCTTCHHHHHHHTCCT--TCEEEEEEEECSCC
T ss_pred CCceEEEEEEeeCCCEEEeeeeecCCC-CCCCEEEEEEE---------EcCCCCcchHhhcCCC--CCEEEEECCeEEEE
Confidence 58888877776 2 368999999998 45689999994 3457999999999999 99999999999999
Q ss_pred CC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEE
Q 006874 468 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF 546 (628)
Q Consensus 468 lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~ 546 (628)
++ +...+++|||+|||||||+++++++...... ..+++|+||+|+.+|++|.+||+++.+.++++ +++.++
T Consensus 111 ~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~ 182 (243)
T 2eix_A 111 YKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKE--KTIINLIFANVNEDDILLRTELDDMAKKYSNF------KVYYVL 182 (243)
T ss_dssp CCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTC--CCEEEEEEEEEEGGGCTTHHHHHHHHHHCTTE------EEEEEE
T ss_pred eCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCC--CcEEEEEEEcCCHHHhhHHHHHHHHHHHCCCe------EEEEEe
Confidence 88 5578999999999999999999998764211 27899999999999999999999998875777 899999
Q ss_pred ecCCC----CccchhhhHHHcHHHHHHHHh---CCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 547 SRKQP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 547 Sr~~~----~k~yVqd~l~~~~~~v~~~l~---~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
|++++ .++||++.+.+ +++. .++.+|+|||+ .|.++|++.|.+
T Consensus 183 s~~~~~~~g~~g~v~~~~l~------~~~~~~~~~~~vy~CGp~-~m~~~v~~~l~~ 232 (243)
T 2eix_A 183 NNPPAGWTGGVGFVSADMIK------QHFSPPSSDIKVMMCGPP-MMNKAMQGHLET 232 (243)
T ss_dssp EECCTTCCSEESSCCHHHHH------HHSCCTTSSEEEEEESSH-HHHHHHHHHHHH
T ss_pred CCCCccccCcCCccCHHHHH------HhcCCCCCCeEEEEECCH-HHHHHHHHHHHH
Confidence 98543 36788864322 1222 35689999998 899999888765
No 26
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.92 E-value=3.7e-26 Score=234.07 Aligned_cols=188 Identities=18% Similarity=0.179 Sum_probs=148.6
Q ss_pred CCHHHHHHhcC---CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCCCC
Q 006874 391 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP 467 (628)
Q Consensus 391 ~p~~~l~~~lp---~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~F~ 467 (628)
.|||++...+| ...+|+|||+|+| .+++.++|+|+++.+.+..+....|.+|+||+++++ |++|.+.+|.|.|.
T Consensus 48 ~pGQ~v~l~~~~~g~~~~R~ySi~s~~-~~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~ 124 (275)
T 1umk_A 48 PVGQHIYLSARIDGNLVVRPYTPISSD-DDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQI--GDTIEFRGPSGLLV 124 (275)
T ss_dssp CTTCEEEEEEEETTEEEEEEECCSSCT-TCCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred CCCcEEEEEEeeCCcEEEeccccCCcc-CCCCeEEEEEEEeccCcccccCCCChhHHHHhcCCC--CCEEEEEcCccceE
Confidence 57888776654 2478999999998 457899999987655544333467999999999999 99999999999874
Q ss_pred C--------C-C--------CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhc
Q 006874 468 R--------P-P--------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN 530 (628)
Q Consensus 468 l--------p-~--------~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~ 530 (628)
+ + + ...++||||+|||||||+++++++..... ...+++|+||+|+.+|++|.+||+++.+.
T Consensus 125 ~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~--~~~~v~l~~~~r~~~d~~~~~el~~l~~~ 202 (275)
T 1umk_A 125 YQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD--DHTVCHLLFANQTEKDILLRPELEELRNK 202 (275)
T ss_dssp EEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT--CCCEEEEEEEESSGGGCTTHHHHHHHHHH
T ss_pred ecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCCC--CCcEEEEEEEcCCHHHhhHHHHHHHHHHh
Confidence 3 2 1 35799999999999999999999876421 12789999999999999999999999876
Q ss_pred CC-CcccCCCCcEEEEEecCCC----CccchhhhHHHcHHHHHHHH---hCCCEEEEeCCCCCCHH-HHHHHHHH
Q 006874 531 DG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLL---LSKASIYVAGSATKMPS-DVWSTFEE 596 (628)
Q Consensus 531 ~g-~l~~~~~~~~~~a~Sr~~~----~k~yVqd~l~~~~~~v~~~l---~~~~~iyvCG~~~~M~~-~v~~~L~~ 596 (628)
++ ++ +++.++|+++. .++||++.+.+. .+ .+++.+|+|||+ .|++ ++++.|.+
T Consensus 203 ~~~~~------~~~~~~s~~~~~~~~~~g~v~~~~l~~------~l~~~~~~~~vyvCGp~-~m~~~~v~~~L~~ 264 (275)
T 1umk_A 203 HSARF------KLWYTLDRAPEAWDYGQGFVNEEMIRD------HLPPPEEEPLVLMCGPP-PMIQYACLPNLDH 264 (275)
T ss_dssp CTTTE------EEEEEESSCCSSCSSEESSCCHHHHHH------HSCCGGGCCEEEEESCH-HHHHHTTHHHHHH
T ss_pred CcCcE------EEEEEEcCCCccccCccCccCHHHHHH------hcCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence 54 56 78889998653 367888754322 22 247899999998 8998 88887765
No 27
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.92 E-value=1.6e-25 Score=236.41 Aligned_cols=177 Identities=21% Similarity=0.283 Sum_probs=149.8
Q ss_pred CCHHHHHHhcCC-CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHh-hCcCCCCCceEEEEeecCCCCC
Q 006874 391 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 391 ~p~~~l~~~lp~-~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v~i~~~~g~F~l 468 (628)
.||||+...+|. ..+|+|||+|+|. .+.++|+|+ +...|.+|+|| .++++ |+.|.+.+|.|.|.+
T Consensus 140 ~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk---------~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f~~ 206 (338)
T 1krh_A 140 LAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVR---------NVPQGKMSEYLSVQAKA--GDKMSFTGPFGSFYL 206 (338)
T ss_dssp CTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEE---------CCTTCHHHHHHHTTCCT--TCEEEEEEEECSCSC
T ss_pred CCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEE---------EcCCCCchhhHhhccCC--CCEEEEECCccceEe
Confidence 589998888886 5789999999983 789999994 34569999999 58999 999999999999998
Q ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006874 469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 548 (628)
Q Consensus 469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 548 (628)
+....|+||||+|||||||+++++++...+.. .+++||||+|+++|++|.+||+++.+.++++ +++.++|+
T Consensus 207 ~~~~~~~vliagGtGiaP~~s~l~~l~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~ 277 (338)
T 1krh_A 207 RDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE---HPVRLVFGVTQDCDLVALEQLDALQQKLPWF------EYRTVVAH 277 (338)
T ss_dssp CCCSSCEEEEEEGGGHHHHHHHHHHHHHHCCS---SCEEEEEEESSGGGCCCHHHHHHHHHHCTTE------EEEEEETT
T ss_pred CCCCceEEEEEccccHhHHHHHHHHHHHcCCC---CeEEEEEEeCCHHHhhhHHHHHHHHHhCCCe------EEEEEEec
Confidence 83348999999999999999999999876533 7899999999999999999999998876777 89999998
Q ss_pred CCC---CccchhhhHHHcHHHHHHHHh-CCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 549 KQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 549 ~~~---~k~yVqd~l~~~~~~v~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++. .++||++.+.+. .+. .+..+|+|||+ .|.+++++.|.+
T Consensus 278 ~~~~~~~~g~v~~~l~~~------~~~~~~~~vy~CGp~-~m~~~v~~~l~~ 322 (338)
T 1krh_A 278 AESQHERKGYVTGHIEYD------WLNGGEVDVYLCGPV-PMVEAVRSWLDT 322 (338)
T ss_dssp CCSSSSEESCSGGGCCGG------GGGGGCSEEEEEEEH-HHHHHHHHHHHH
T ss_pred CCCCCCccCccCHHHHHh------hcccCCcEEEEECCH-HHHHHHHHHHHH
Confidence 654 368999887642 112 47799999998 999998887765
No 28
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.92 E-value=2.6e-26 Score=234.75 Aligned_cols=200 Identities=17% Similarity=0.234 Sum_probs=154.4
Q ss_pred CCHHHHHHhcC---CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCCC
Q 006874 391 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGSL 466 (628)
Q Consensus 391 ~p~~~l~~~lp---~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~F 466 (628)
.|||++...+| ....|+|||+|+| ..+.++|+|. +...|.+|+||+++++ |++|.+. +|.|.|
T Consensus 48 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~~~~~~v~---------~~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~~ 114 (271)
T 4fk8_A 48 NNGEFTMVGLEVDGKPLTRAYSIVSPN--YEEHLEFFSI---------KVQNGPLTSRLQHLKV--GDPVLIGKKPTGTL 114 (271)
T ss_dssp CTTCEEEEEEEETTEEEEEEEECCSCT--TSSSEEEEEE---------CCTTCTTHHHHTTCCT--TCEEEEESCCBCSC
T ss_pred CCCCEEEEEccCCCceeeeeEeccCCC--CCCcEEEEEE---------EECCCchhhHHhcCCC--CCEEEEecCCCcce
Confidence 58999888887 2358999999998 4577888883 3357999999999999 9999999 999999
Q ss_pred CCCC--CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC--------Cccc
Q 006874 467 PRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG--------VFSE 536 (628)
Q Consensus 467 ~lp~--~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g--------~l~~ 536 (628)
.++. ...++||||+|||||||+++++++...... .+++|+||+|+.+|++|.+||+++.+++. ++
T Consensus 115 ~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~-- 189 (271)
T 4fk8_A 115 VADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF---DKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKL-- 189 (271)
T ss_dssp CGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC---SEEEEEECCCSHHHHHHHHHHHTCCTTCTTHHHHHHHHE--
T ss_pred ecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCccccccccceE--
Confidence 8873 678999999999999999999998765433 78999999999999999999999887643 35
Q ss_pred CCCCcEEEEEecCCC-CccchhhhHHHcHHHHHHHH------hCCCEEEEeCCCCCCHHHHHHHHHHHHHHhCCCCHHHH
Q 006874 537 AKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLL------LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 609 (628)
Q Consensus 537 ~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~~~v~~~l------~~~~~iyvCG~~~~M~~~v~~~L~~il~~~~~~~~~~a 609 (628)
+++.++|+++. .+++|++.+.+. .+.+.+ .+++.+|+|||+ .|.++|++.|.+.. ++.
T Consensus 190 ----~~~~~~s~~~~~~~G~v~~~~~~~--~l~~~~~~~~~~~~~~~v~vCGp~-~m~~~v~~~l~~~g-----v~~--- 254 (271)
T 4fk8_A 190 ----VYYPTVTREEFENEGRITDLIASG--KLFTDLDMPPFSPEQDRVMLCGST-AMLKDTTELLKKAG-----LVE--- 254 (271)
T ss_dssp ----EEEECC-------CCHHHHHHHHS--HHHHHTTCCCCCTTTEEEEEEECH-HHHHHHHHHHHHTT-----CCB---
T ss_pred ----EEEEEecCCccccccccChHHhcc--hhhhhcccccCCCCCCEEEEECCH-HHHHHHHHHHHHcC-----Cch---
Confidence 68888888764 578999887653 111111 247899999998 99999998887543 322
Q ss_pred HHHHHHHHHcCCEEEeec
Q 006874 610 ANWLKALQRAGRYHVEAW 627 (628)
Q Consensus 610 ~~~l~~l~~~~Ry~~dvw 627 (628)
.++...|+|+.|.|
T Consensus 255 ----~~i~~~~~~~~E~y 268 (271)
T 4fk8_A 255 ----GKNSAPGHYVIERA 268 (271)
T ss_dssp ----CBTTBCBSEEEEES
T ss_pred ----hhcCCCCcEEEEEe
Confidence 12334678888875
No 29
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.92 E-value=1.6e-25 Score=224.98 Aligned_cols=180 Identities=17% Similarity=0.276 Sum_probs=145.8
Q ss_pred CCHHHHHHhcCCC-----cccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC
Q 006874 391 MPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG 464 (628)
Q Consensus 391 ~p~~~l~~~lp~~-----~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g 464 (628)
.|+|++...+|.. .+|+|||+|+| ..+.++|+|+.+.. +....|.+|+||+ .+++ |++|.+.+|.|
T Consensus 35 ~pGq~v~l~~~~~~~~~~~~R~ySi~s~~--~~~~~~i~vk~~~~----~~~~~G~~S~~l~~~l~~--G~~v~v~gP~G 106 (243)
T 4eh1_A 35 QPGQYIGIEVTPEGSDYREIRQYSLSHAS--NGREYRISVKREGV----GSDNPGLVSHYLHNNVKV--GDSVKLYAPAG 106 (243)
T ss_dssp CTTCEEEEEECCSSCSSCEEEEEEBCSCC--CSSCEEEEEECTTT----TSSSCCHHHHHHHHHCCT--TCEEEEEEEEC
T ss_pred CCCCEEEEEEecCCCccccceeeEeccCC--CCCeEEEEEEEeec----CCCCCCeehhHHHhcCCC--CCEEEEEccCc
Confidence 5899998888742 46999999998 45789999843210 1126699999996 6999 99999999999
Q ss_pred CCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006874 465 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 544 (628)
Q Consensus 465 ~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 544 (628)
.|.+++...|+||||+|||||||+++++++..+... . ++|+||+|+.+|++|.+||+++.+.+ ++ ++++
T Consensus 107 ~~~~~~~~~~~vliagGtGitp~~~~l~~l~~~~~~---~-v~l~~~~r~~~~~~~~~el~~l~~~~-~~------~~~~ 175 (243)
T 4eh1_A 107 DFFYVERERPVVLISAGVGATPMQAILHTLAKQNKS---G-VTYLYACNSAKEHTFAQETAQLIAQQ-GW------MQQV 175 (243)
T ss_dssp SCCCCCCSSCEEEEEEGGGHHHHHHHHHHHHHTTCC---S-EEEEEEESSGGGCTTHHHHHHHHHHH-TC------EEEE
T ss_pred ccCcCCCCCCEEEEEccccHHHHHHHHHHHHHcCCC---e-EEEEEEeCChhhhhHHHHHHHHHHhC-Ce------EEEE
Confidence 999886678999999999999999999999886542 4 99999999999999999999999884 67 8999
Q ss_pred EEecCCC---CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006874 545 AFSRKQP---QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 545 a~Sr~~~---~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
++|++.. .++++++.+. . +-..++.||+|||+ .|.++|++.|.+.
T Consensus 176 ~~s~~~~~~~~~g~~~~~~~-~------~~~~~~~vyvCGp~-~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 176 WYRDESADDVLQGEMQLAEL-I------LPIEDGDFYLCGPI-GFMQYVVKQLLAL 223 (243)
T ss_dssp EESSCCCTTCEESSCCCTTS-C------CCTTTCEEEEEECH-HHHHHHHHHHHHH
T ss_pred EEccCCCcccccCCccHHHe-e------ccCCCcEEEEECCH-HHHHHHHHHHHHc
Confidence 9998654 3567665443 1 11248899999998 8999998888753
No 30
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.91 E-value=2.7e-25 Score=227.43 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=146.7
Q ss_pred CCHHHHHHhcCC----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCC
Q 006874 391 MPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS 465 (628)
Q Consensus 391 ~p~~~l~~~lp~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~ 465 (628)
.||||+...+|. ..+|+|||+|+|. .+.++|+|+. .+.|.+|+||+++++ |+.|.+. +|.|.
T Consensus 45 ~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~--~~~~~l~v~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~ 111 (272)
T 2bgi_A 45 RSGEFVMIGLLDDNGKPIMRAYSIASPAW--DEELEFYSIK---------VPDGPLTSRLQHIKV--GEQIILRPKPVGT 111 (272)
T ss_dssp CTTCEEEEEEECTTSCEEEEEEECCSCTT--CSEEEEEEEC---------CTTCTTHHHHTTCCT--TCEEEEEEEEECS
T ss_pred CCCCEEEEEeccCCCCeeeeeeeeccCCC--CCeEEEEEEE---------ccCCCchhHHHhCCC--CCEEEEeeCCCCc
Confidence 589998887772 3689999999983 4789998843 356999999999999 9999999 89999
Q ss_pred CCCC-CC-CCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHH-HhHh-----cC--CCcc
Q 006874 466 LPRP-PP-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL-SHSL-----ND--GVFS 535 (628)
Q Consensus 466 F~lp-~~-~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~-~~~~-----~~--g~l~ 535 (628)
|.++ .. ..++||||+|||||||+++++++...... .+++|+||+|+.+|++|.+||+ ++.+ .+ +++
T Consensus 112 f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~- 187 (272)
T 2bgi_A 112 LVIDALLPGKRLWFLATGTGIAPFASLMREPEAYEKF---DEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKL- 187 (272)
T ss_dssp CCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGTSC---SEEEEEEEESSSGGGHHHHHHHHHHHHCTTTTTTSTTTE-
T ss_pred ccccccccCCeEEEEeecccHHHHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhcchhhcccCCcE-
Confidence 9887 43 68999999999999999999987654332 7899999999999999999999 8876 32 566
Q ss_pred cCCCCcEEEEEecCCC-CccchhhhHHHcH-HHHHHH--H-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 536 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQS-QRIWNL--L-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~-~~v~~~--l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+++.++||++. .++||++.+.+.. +....+ + .+++.+|+|||+ .|.++|++.|.+
T Consensus 188 -----~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~ 247 (272)
T 2bgi_A 188 -----KYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSL-AFNVDVMKVLES 247 (272)
T ss_dssp -----EEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHT
T ss_pred -----EEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECCH-HHHHHHHHHHHH
Confidence 78889998743 4789999887542 111100 1 147899999998 999998877754
No 31
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.91 E-value=1.5e-24 Score=234.01 Aligned_cols=180 Identities=17% Similarity=0.225 Sum_probs=145.6
Q ss_pred CCHHHHHHhc--C--C---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEee
Q 006874 391 MPIDWLVQLV--P--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQ 462 (628)
Q Consensus 391 ~p~~~l~~~l--p--~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~ 462 (628)
.||||+...+ | . ..+|+|||+|+| .++.++|+|+.... ....+.|.+|+||+ ++++ ||+|.+.+|
T Consensus 185 ~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p--~~~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~--Gd~v~v~gP 257 (399)
T 4g1v_A 185 TPGQYITVNTHPIRQENQYDALRHYSLCSAS--TKNGLRFAVKMEAA---RENFPAGLVSEYLHKDAKV--GDEIKLSAP 257 (399)
T ss_dssp CTTCEEEEEECCCSTTCCSCEEEEEEBSCSC--CTTCEEEEEECCCC---BTTBCCCHHHHHHHHTCCT--TCEEEEEEE
T ss_pred CCCCEEEEEEeCCCCCCccceeeeecccCCC--CCCeEEEEEEeccC---CCCCCCCEehhHHHhCCCC--CCEEEEEec
Confidence 4888887765 3 3 358999999998 45789999854210 01135899999996 8999 999999999
Q ss_pred cCCCCCC-C----CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccC
Q 006874 463 KGSLPRP-P----PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEA 537 (628)
Q Consensus 463 ~g~F~lp-~----~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~ 537 (628)
.|.|.++ + ...|+||||+|||||||++|++++...+.. .+++|+||+|+.+|++|.++|+++.+.++++
T Consensus 258 ~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~--- 331 (399)
T 4g1v_A 258 AGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPN---RPIYWIQSSYDEKTQAFKKHVDELLAECANV--- 331 (399)
T ss_dssp ECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTT---SCEEEEEEESSSTTSTTHHHHHHHHTTCSSE---
T ss_pred ccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCC---CCEEEEEecCCHHHhhhHHHHHHHHHhCCCc---
Confidence 9999998 5 578999999999999999999999887644 7899999999999999999999999876777
Q ss_pred CCCcEEEEEecCCCCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 538 KGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 538 ~~~~~~~a~Sr~~~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
++++++|+++ ++++. +.+.+.+.+++.+|+|||. .|.++|++.|.+
T Consensus 332 ---~~~~~~s~~~---g~~~~------~~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~ 377 (399)
T 4g1v_A 332 ---DKIIVHTDTE---PLINA------AFLKEKSPAHADVYTCGSL-AFMQAMIGHLKE 377 (399)
T ss_dssp ---EEEEEETTTS---CCCCH------HHHHHHSCSSCEEEEEECH-HHHHHHHHHHHH
T ss_pred ---EEEEEEeCCC---CcccH------HHHHhhCCCCCEEEEECCH-HHHHHHHHHHHH
Confidence 8999999864 45542 2223344558999999998 999998888754
No 32
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.91 E-value=8.7e-25 Score=235.70 Aligned_cols=177 Identities=15% Similarity=0.222 Sum_probs=143.2
Q ss_pred CCHHHHHHhcCC-----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhC-cCCCCCceEEEEeecC
Q 006874 391 MPIDWLVQLVPP-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG 464 (628)
Q Consensus 391 ~p~~~l~~~lp~-----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~i~~~~g 464 (628)
.|||++...+|+ ..+|+|||+|+| .++.++|+|+. ...|.+|+||++ +++ ||+|.+.+|.|
T Consensus 184 ~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p--~~~~~~i~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G 250 (396)
T 1gvh_A 184 RPGQYLGVWLKPEGFPHQEIRQYSLTRKP--DGKGYRIAVKR---------EEGGQVSNWLHNHANV--GDVVKLVAPAG 250 (396)
T ss_dssp CTTCEEEEEECCTTCSSCEEEEEECCSCC--CSSCEEEEEEC---------CTTCHHHHHHHHTCCT--TCEEEEEEEEC
T ss_pred CCCCeEEEEecCCCCccceeecceeccCC--CCCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCCc
Confidence 478887777663 358999999998 36789999943 346999999985 999 99999999999
Q ss_pred CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006874 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 543 (628)
Q Consensus 465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 543 (628)
.|.++ +..+|+||||+|||||||+++++++...+.. .+++|+||+|+.+|++|++||+++.+.++++ +++
T Consensus 251 ~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~ 321 (396)
T 1gvh_A 251 DFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHT---AQVNWFHAAENGDVHAFADEVKELGQSLPRF------TAH 321 (396)
T ss_dssp SCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCTTTCCSHHHHHHHHHTSSSE------EEE
T ss_pred ceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhhHHHHHHHHHHCCCe------EEE
Confidence 99998 6788999999999999999999999876543 7899999999999999999999998876777 889
Q ss_pred EEEecCCC---------Cccchhhh-HHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 544 VAFSRKQP---------QKVYVQHK-MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 544 ~a~Sr~~~---------~k~yVqd~-l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+++|+++. .+++++.. +.+.. . ..++.+|+|||+ .|.++|++.|.+
T Consensus 322 ~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~-----~-~~~~~vyvCGp~-~m~~~v~~~L~~ 377 (396)
T 1gvh_A 322 TWYRQPSEADRAKGQFDSEGLMDLSKLEGAF-----S-DPTMQFYLCGPV-GFMQFTAKQLVD 377 (396)
T ss_dssp EEESSCCHHHHHHTCCSEESSCCGGGSSSCC-----C-CTTCEEEEESCH-HHHHHHHHHHHH
T ss_pred EEECCCCccccccCccCccCcCCHHHHhhcc-----C-CCCCEEEEeCCH-HHHHHHHHHHHH
Confidence 99998653 23455432 22110 1 127899999998 899998887764
No 33
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.91 E-value=2.1e-25 Score=226.27 Aligned_cols=184 Identities=17% Similarity=0.199 Sum_probs=146.4
Q ss_pred CCCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEE-eecCC
Q 006874 390 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS 465 (628)
Q Consensus 390 ~~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~-~~~g~ 465 (628)
..|||++...+|. ...|+|||+|+|. .+.++|+|.. .+.|.+|+||+++++ |++|.+. +|.|.
T Consensus 31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~~~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gp~G~ 97 (257)
T 2qdx_A 31 FKTGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSIK---------VPDGPLTSRLQHLKE--GDELMVSRKPTGT 97 (257)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEEC---------CTTCTTHHHHTTCCT--TCEEEECSCCBCS
T ss_pred cCCCCEEEEEecCCCCceeeeeEeecCCC--CCeEEEEEEE---------eCCCcchhHHHhCCC--CCEEEEecCCCCC
Confidence 3589998777763 4689999999983 4789998843 357999999999999 9999999 79999
Q ss_pred CCCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHH-HhHh-----cC--CCcc
Q 006874 466 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL-SHSL-----ND--GVFS 535 (628)
Q Consensus 466 F~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~-~~~~-----~~--g~l~ 535 (628)
|.++ . ...++||||+|||||||+++++++...+.. .+++|+||+|+.+|++|.+||+ ++.+ .+ +++
T Consensus 98 f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~- 173 (257)
T 2qdx_A 98 LVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY---EKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKL- 173 (257)
T ss_dssp CCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHC---SEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHE-
T ss_pred ccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCC---CeEEEEEEcCCHHHhHhHHHHHHHHHhchhhhccCCCcE-
Confidence 9887 4 368999999999999999999988664322 6899999999999999999999 8876 21 456
Q ss_pred cCCCCcEEEEEecCCC-CccchhhhHHHcH-HHHHHH--H-hCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 536 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQS-QRIWNL--L-LSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~~~-~k~yVqd~l~~~~-~~v~~~--l-~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+++.++|+++. .+++|++.+.+.. +....+ + ..++.+|+|||+ .|.++|++.|.+
T Consensus 174 -----~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~ 233 (257)
T 2qdx_A 174 -----IYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSP-SMLEETSAVLDS 233 (257)
T ss_dssp -----EEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHH
T ss_pred -----EEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECCH-HHHHHHHHHHHH
Confidence 78889998743 4789999887542 111110 1 247899999998 999998887764
No 34
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.91 E-value=8.4e-25 Score=222.55 Aligned_cols=169 Identities=18% Similarity=0.234 Sum_probs=138.2
Q ss_pred CCHHHHHHhcCC---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC-C
Q 006874 391 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-L 466 (628)
Q Consensus 391 ~p~~~l~~~lp~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-F 466 (628)
.|+||+...+|. ..+|+|||+|+| ...+.++|+|+. .+.|.+|+||+++++ ||+|.+.+|.|. |
T Consensus 35 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~-~~~~~l~~~vk~---------~~~G~~S~~l~~l~~--Gd~v~v~gP~G~~f 102 (262)
T 1ep3_B 35 LPGQFLHLAVPNGAMLLRRPISISSWD-KRAKTCTILYRI---------GDETTGTYKLSKLES--GAKVDVMGPLGNGF 102 (262)
T ss_dssp STTCEEEECCSCTTCCSCEEEECCEEE-TTTTEEEEEEEC---------CCTTSHHHHHHTCCT--TCEEEEEEEESBCC
T ss_pred CCCceEEEEcCCCCceeeEEEEeeeec-CCCCEEEEEEEE---------ecCCchHHHHhcCCC--CCEEEEEcccCCCc
Confidence 589998877875 689999999998 357899999943 346999999999999 999999999998 9
Q ss_pred CCC-C-CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006874 467 PRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 544 (628)
Q Consensus 467 ~lp-~-~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 544 (628)
.++ + ...|+||||+|||||||+++++++...+ .+++||||+|+++|++|.+||+++... ++++
T Consensus 103 ~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~----------~~~~ 167 (262)
T 1ep3_B 103 PVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG-----CQMTILLGFASENVKILENEFSNLKNV----------TLKI 167 (262)
T ss_dssp CCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT-----CEEEEEEEESSGGGCCCHHHHHTSTTE----------EEEE
T ss_pred cCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHhhhccC----------cEEE
Confidence 988 3 4789999999999999999999998764 689999999999999999999886543 2333
Q ss_pred EEecCCC--CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 545 AFSRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 545 a~Sr~~~--~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+ ++++. .++||++++.+. +.+++.+|+|||+ .|.+++++ |.+
T Consensus 168 ~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp~-~m~~~v~~-l~~ 211 (262)
T 1ep3_B 168 A-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGAP-AMLKAVAK-KYD 211 (262)
T ss_dssp E-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESCH-HHHHHHHH-HTT
T ss_pred E-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECCH-HHHHHHHH-HHh
Confidence 3 44432 468999876653 2447899999998 89998887 643
No 35
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.90 E-value=9.3e-25 Score=222.94 Aligned_cols=188 Identities=17% Similarity=0.175 Sum_probs=141.3
Q ss_pred CCHHHHHHhcC---CCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhhCcCCCCCceEEEEeecCC--
Q 006874 391 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-- 465 (628)
Q Consensus 391 ~p~~~l~~~lp---~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~i~~~~g~-- 465 (628)
.|||++...++ ...+|+|||+|+| ..++.++|+|+++......+....|.+|+||+++++ |+.|.+.+|.|.
T Consensus 44 ~pGQ~v~l~~~~~g~~~~R~ySi~s~~-~~~~~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~--Gd~v~v~gP~G~~~ 120 (270)
T 2cnd_A 44 PIGKHIFVCATIEGKLCMRAYTPTSMV-DEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPV--GSYIDVKGPLGHVE 120 (270)
T ss_dssp CTTCEEEEEEEETTEEEEEEECCCSCT-TCCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred CCCCEEEEEeeeCCcEEEEeeccCCCc-cCCCEEEEEEEEeccCcccccCCCCchhhHHhcCCC--CCEEEEECCcccce
Confidence 57888766554 2468999999998 356899999976521111011135999999999999 999999999996
Q ss_pred ------CCCCC---CCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCC-Ccc
Q 006874 466 ------LPRPP---PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFS 535 (628)
Q Consensus 466 ------F~lp~---~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g-~l~ 535 (628)
|.++. ...|+||||+|||||||+++++++...... ...+++||||+|+.+|++|.+||+++.+.++ .+
T Consensus 121 ~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~- 198 (270)
T 2cnd_A 121 YTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE-DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRL- 198 (270)
T ss_dssp CCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT-CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTE-
T ss_pred eccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCC-CCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcE-
Confidence 55552 468999999999999999999999875210 1278999999999999999999999987644 46
Q ss_pred cCCCCcEEEEEecC---CC----CccchhhhHHHcHHHHHHHHh---CCCEEEEeCCCCCCHHH-HHHHHH
Q 006874 536 EAKGGGFYVAFSRK---QP----QKVYVQHKMLEQSQRIWNLLL---SKASIYVAGSATKMPSD-VWSTFE 595 (628)
Q Consensus 536 ~~~~~~~~~a~Sr~---~~----~k~yVqd~l~~~~~~v~~~l~---~~~~iyvCG~~~~M~~~-v~~~L~ 595 (628)
+++.++|++ ++ .++||++.+.+. .+. .++.+|+|||+ .|++. +++.|.
T Consensus 199 -----~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~------~l~~~~~~~~vyvCGp~-~m~~~~~~~~L~ 257 (270)
T 2cnd_A 199 -----KVWYVIDQVKRPEEGWKYSVGFVTEAVLRE------HVPEGGDDTLALACGPP-PMIQFAISPNLE 257 (270)
T ss_dssp -----EEEEEESCCSCGGGCCCSEESSCCHHHHHH------HSCCCSSSEEEEEECCH-HHHHTTTHHHHH
T ss_pred -----EEEEEECCCCCCCCCcccccccCCHHHHHH------hcCCCcCCEEEEEECCH-HHHHHHHHHHHH
Confidence 788888873 11 367888764332 222 25689999998 88886 466664
No 36
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.90 E-value=4.9e-24 Score=230.36 Aligned_cols=181 Identities=18% Similarity=0.284 Sum_probs=142.6
Q ss_pred CCHHHHHHhcC--C---CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCcccccccHHhh-CcCCCCCceEEEEeecC
Q 006874 391 MPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG 464 (628)
Q Consensus 391 ~p~~~l~~~lp--~---~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~i~~~~g 464 (628)
.|||++...+| . ..+|+|||+|+| .++.++|+|+.+.. ...+.|.+|+||+ ++++ ||.|.+.+|.|
T Consensus 186 ~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p--~~~~~~i~Vk~~~~----~~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G 257 (403)
T 1cqx_A 186 EPGQYTSVAIDVPALGLQQIRQYSLSDMP--NGRTYRISVKREGG----GPQPPGYVSNLLHDHVNV--GDQVKLAAPYG 257 (403)
T ss_dssp CTTCEEEEEEEETTTTEEEEEEEECCSCC--CSSCEEEEEECCCB----TTBCCCHHHHHHHHHCCT--TCEEEECCCBC
T ss_pred CCCCEEEEEEecCCCCcceeecceecCCC--CCCeEEEEEEECCC----CCCCCCeehHHHhhCCCC--CCEEEEecCcc
Confidence 47888766665 2 357999999998 36789999964310 1123699999998 5999 99999999999
Q ss_pred CCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEE
Q 006874 465 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY 543 (628)
Q Consensus 465 ~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~ 543 (628)
.|.++ +..+|+||||+|||||||+++++++.. .. ..+++|+||+|+.+|++|++||+++.+.++++ +++
T Consensus 258 ~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~~---~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~ 327 (403)
T 1cqx_A 258 SFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-AP---PRQVVFVHGARNSAVHAMRDRLREAAKTYENL------DLF 327 (403)
T ss_dssp SCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-SS---CCCEEEEEEESCSSSCHHHHHHHHHHHHCTTE------EEE
T ss_pred CcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-CC---CCcEEEEEEeCChhhCcHHHHHHHHHHhCCCc------EEE
Confidence 99998 677899999999999999999999876 32 27899999999999999999999998876777 889
Q ss_pred EEEecCCCC---------ccchhhh-HHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 544 VAFSRKQPQ---------KVYVQHK-MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 544 ~a~Sr~~~~---------k~yVqd~-l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+++|+++.. .++++.. +.+. + ...++.+|+|||+ .|.++|++.|.+
T Consensus 328 ~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~---~---~~~~~~vyvCGp~-~m~~~v~~~L~~ 383 (403)
T 1cqx_A 328 VFYDQPLPEDVQGRDYDYPGLVDVKQIEKS---I---LLPDADYYICGPI-PFMRMQHDALKN 383 (403)
T ss_dssp EEESSCCTTCCBTTTBSEESSCCGGGSHHH---H---CCTTCEEEEESSH-HHHHHHHHHHHH
T ss_pred EEECCCCcccccccccCcCCCcCHHHHhhc---c---CCCCCEEEEeCCH-HHHHHHHHHHHH
Confidence 999986542 2344432 2211 0 1237899999998 899988887764
No 37
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.90 E-value=9.3e-24 Score=195.48 Aligned_cols=143 Identities=29% Similarity=0.355 Sum_probs=129.0
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCC-CCeEEEEEecCCCCC--CChhHHHHHHHHHhc
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPE-EDTVIFVVSTTGQGD--TPDSMKVFWRFLLQK 83 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~-~~~vi~~~sT~g~G~--~p~~~~~F~~~L~~~ 83 (628)
|+++|+|+|+||||+++|+.|++.+.+.|++++++++++.++.++.+ ++.+||++||||.|. +|++++.|++++...
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~ 80 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEET 80 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGS
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhc
Confidence 57999999999999999999999999899999999999988888988 999999999999999 999999999998643
Q ss_pred cCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHH
Q 006874 84 SLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRR 155 (628)
Q Consensus 84 ~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~ 155 (628)
. +++++++|||+|+++|++||.+.+.+++.|+.+|++.+.+.+.+|...++ ..+.+.+|.++++++
T Consensus 81 ~-----l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~~ 146 (147)
T 1f4p_A 81 G-----AQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRA-ARDDIVGWAHDVRGA 146 (147)
T ss_dssp C-----CTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEEEESCGGG-GHHHHHHHHHHHHTT
T ss_pred c-----cCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccccccCchh-HHHHHHHHHHHHHhh
Confidence 2 78999999999999999999999999999999999999888888876443 677889999888653
No 38
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.89 E-value=7.4e-24 Score=221.99 Aligned_cols=172 Identities=14% Similarity=0.214 Sum_probs=140.7
Q ss_pred CCHHHHHHhcCCCcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccccc-ccHHhh-CcCCCCCceEEEEeecCCCCC
Q 006874 391 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGL-CSVWLA-GLDPQQGIYIPAWFQKGSLPR 468 (628)
Q Consensus 391 ~p~~~l~~~lp~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~-~S~~L~-~l~~~~G~~v~i~~~~g~F~l 468 (628)
.||||+...+|....|+|||+|+| .+.+.++|+| ++...|. +|+||+ ++++ |+.|.+.+|.|.|.+
T Consensus 40 ~pGQ~v~l~~~~g~~R~ySi~s~~-~~~~~l~i~V---------k~~~~G~g~S~~L~~~l~~--Gd~v~v~gP~g~f~l 107 (321)
T 2pia_A 40 EAGANLTVAVPNGSRRTYSLCNDS-QERNRYVIAV---------KRDSNGRGGSISFIDDTSE--GDAVEVSLPRNEFPL 107 (321)
T ss_dssp CTTCEEEEECTTSCEEEEECCSCT-TCCSEEEEEE---------ECCTTSCSHHHHHHHSCCT--TCEEEECCCBCCSCC
T ss_pred CCCCEEEEECCCCCcEEEEeCCCC-CCCCeEEEEE---------EEecCCcchhHHHHhcCCC--CCEEEEeCCcccccc
Confidence 589998888887789999999998 4567899999 3345688 899998 8999 999999999999999
Q ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEec
Q 006874 469 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 548 (628)
Q Consensus 469 p~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr 548 (628)
+....++||||+|||||||++|++++...+. .+++|+||+|+++|++|.+||+++... . ++.+.+++
T Consensus 108 ~~~~~~~vliagG~GItP~~s~l~~l~~~~~----~~v~l~~~~r~~~~~~~~~el~~l~~~-~--------~~~~~~~~ 174 (321)
T 2pia_A 108 DKRAKSFILVAGGIGITPMLSMARQLRAEGL----RSFRLYYLTRDPEGTAFFDELTSDEWR-S--------DVKIHHDH 174 (321)
T ss_dssp CTTCSEEEEEEEGGGHHHHHHHHHHHHHHCS----SEEEEEEEESCGGGCTTHHHHHSTTTT-T--------TEEEEECT
T ss_pred CCCCCCEEEEEecccHhHHHHHHHHHHHcCC----CcEEEEEEECChhhhHHHHHHhcCccC-C--------eEEEEECC
Confidence 8446899999999999999999999987641 689999999999999999999988622 3 45556666
Q ss_pred CCC-CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 549 KQP-QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 549 ~~~-~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+.. .+.++++++.+. ..+..+|+|||+ .|.++|++.|.+
T Consensus 175 ~~~~g~~~~~~ll~~~--------~~~~~vyvCGP~-~m~~~v~~~l~~ 214 (321)
T 2pia_A 175 GDPTKAFDFWSVFEKS--------KPAQHVYCCGPQ-ALMDTVRDMTGH 214 (321)
T ss_dssp TCTTSCCCHHHHHSSC--------CTTEEEEEESCH-HHHHHHHHHTTT
T ss_pred CcccCccCHHHHhccc--------CCCCEEEEECCH-HHHHHHHHHHHh
Confidence 432 345666555431 347899999998 999999888876
No 39
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.86 E-value=1.4e-22 Score=194.67 Aligned_cols=149 Identities=24% Similarity=0.283 Sum_probs=125.6
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCC--------hhHHHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP--------DSMKVFW 77 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p--------~~~~~F~ 77 (628)
|++++|+|+|+||||+++|+.|++.+... +.++++++++.+..++.+++.|||++|||+.|.+| ++++.|+
T Consensus 1 M~kilIiY~S~tGnT~~iA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~G~~pg~~~~~~~~~~~~f~ 79 (182)
T 2wc1_A 1 MAKIGLFFGSDTGTTRKIAKQIKDMFDDE-VMAKPLNVNRADVADFMAYDFLILGTPTLGDGQLPGLSANAASESWEEFL 79 (182)
T ss_dssp CCSEEEEECCSSSHHHHHHHHHHTTSCTT-TBCCCEEGGGCCHHHHHHCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHG
T ss_pred CcEEEEEEECCCchHHHHHHHHHHHhccc-CceEEEEcccCCHHHHhhCCeEEEEEeeCCCCCCCccccccchhHHHHHH
Confidence 57899999999999999999999998754 66788898887777788999999999999889999 9999999
Q ss_pred HHHHhccCcccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc-------------------eeeeCC
Q 006874 78 RFLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GLGDDQ 136 (628)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~~d~~ 136 (628)
++|... .++|+++++||+|+++ |+ +||.+.+.+++.|.++|++.+.+. +...+.
T Consensus 80 ~~l~~~-----~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~~~~~~~~~~~gl~~d~ 154 (182)
T 2wc1_A 80 PRIADQ-----DFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAKGYGFEDSLAVVEGEFLGLALDQ 154 (182)
T ss_dssp GGGTTC-----CCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECTTSCCSCCTTEETTEESSEEECT
T ss_pred HHhhhc-----cCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCCCcCcccchhhhcCceeeeeccC
Confidence 887543 3889999999999997 86 799999999999999999998763 343332
Q ss_pred CC--CCchhhHHHHHHHHHHHHHhhC
Q 006874 137 HP--SGYEGALDPWMRSLWRRLHQID 160 (628)
Q Consensus 137 ~~--~g~~~~~~~W~~~l~~~l~~~~ 160 (628)
++ +..++.+++|.++|++.|...+
T Consensus 155 ~~~~~~~~~~~~~w~~~l~~~l~~~~ 180 (182)
T 2wc1_A 155 DNQAALTPERLKGWLSLIAADFGLVL 180 (182)
T ss_dssp TTCGGGHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCccccHHHHHHHHHHHHHHHhccc
Confidence 21 1258889999999999986543
No 40
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.85 E-value=2.3e-22 Score=189.80 Aligned_cols=140 Identities=21% Similarity=0.277 Sum_probs=116.1
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
|++++|+|+|+||||+++|+.|++.+ |. +++.++++++..++.+++.|||++||||.|.+|+++..|+++|...
T Consensus 1 M~k~~I~Y~S~tGnT~~~A~~ia~~l---g~-~~~~~~~~~~~~~l~~~d~ii~g~pt~~~g~~p~~~~~f~~~l~~~-- 74 (164)
T 2bmv_A 1 MGKIGIFFGTDSGNAEAIAEKISKAI---GN-AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEAS-- 74 (164)
T ss_dssp -CCEEEEECCSSSHHHHHHHHHHHHH---CS-EEEEEGGGCCHHHHTTCSEEEEEEEEETTTEECHHHHHHHTTCCTH--
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHc---CC-cEEEecccCCHhHHhhCCEEEEEECCcCCCcCcHHHHHHHHHHhhh--
Confidence 57899999999999999999999998 55 8899999888888889999999999999999999999999887532
Q ss_pred cccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc--------------------eeeeCCCC-CCch
Q 006874 86 SKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER--------------------GLGDDQHP-SGYE 142 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~--------------------~~~d~~~~-~g~~ 142 (628)
.+++++++|||+||+. |+ .||.+++.++++|++ ++++.+. ...|...+ +..+
T Consensus 75 ---~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~ 149 (164)
T 2bmv_A 75 ---DFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTD 149 (164)
T ss_dssp ---HHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCTTEETTEESSEEECTTTCGGGHH
T ss_pred ---hcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchhhhhcCcccCccCCCCCccccCH
Confidence 2789999999999995 98 499999999999988 7777652 22333222 2357
Q ss_pred hhHHHHHHHHHHHH
Q 006874 143 GALDPWMRSLWRRL 156 (628)
Q Consensus 143 ~~~~~W~~~l~~~l 156 (628)
+.+++|.+++++.|
T Consensus 150 ~~~~~w~~~l~~~l 163 (164)
T 2bmv_A 150 ERISKWVEQVKGSF 163 (164)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhh
Confidence 88999999886543
No 41
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.85 E-value=5.9e-22 Score=189.87 Aligned_cols=145 Identities=22% Similarity=0.309 Sum_probs=122.6
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCC--------hhHHHHHH
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTP--------DSMKVFWR 78 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p--------~~~~~F~~ 78 (628)
++++|+|+|+||||+++|+.|++.+.. ++.++++++++.+..++.+++.|||++|||+.|++| ++++.|++
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~-~~~v~~~~~~~~~~~~l~~~d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~ 79 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD-ETMSDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLP 79 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT-TTBCCCEEGGGCCHHHHHTCSEEEEEEECBTTTBCSSGGGTCSSCCHHHHHH
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC-CCceEEEEhhhCCHHHHhcCCEEEEEeccCCCCcCCcccccccchHHHHHHH
Confidence 479999999999999999999999865 566788899887777788999999999999889999 99999999
Q ss_pred HHHhccCcccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCC
Q 006874 79 FLLQKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ 136 (628)
Q Consensus 79 ~L~~~~~~~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~ 136 (628)
+|.... ++|+++++||+||+. |+ +||.+++.+++.|+++|++.+.+. +. +|..
T Consensus 80 ~l~~~~-----l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~f~gl~~d~~ 154 (179)
T 1yob_A 80 KIEGLD-----FSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFESSEAVVDGKFVGLALDLD 154 (179)
T ss_dssp HHTTCC-----CTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCSCCTTBSSSSBSSEEECTT
T ss_pred Hhhhcc-----cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCCCcccchhhhcCceeccccCCC
Confidence 985432 889999999999997 97 699999999999999999998653 22 3432
Q ss_pred C-CCCchhhHHHHHHHHHHHHH
Q 006874 137 H-PSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 137 ~-~~g~~~~~~~W~~~l~~~l~ 157 (628)
+ ++..++.+++|.+++++.|.
T Consensus 155 ~~~~~~~~~i~~w~~~l~~~~~ 176 (179)
T 1yob_A 155 NQSGKTDERVAAWLAQIAPEFG 176 (179)
T ss_dssp TCGGGHHHHHHHHHHHHGGGGT
T ss_pred CCCcccHHHHHHHHHHHHHHHh
Confidence 1 12368899999999887663
No 42
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.84 E-value=7e-21 Score=181.35 Aligned_cols=142 Identities=25% Similarity=0.357 Sum_probs=119.2
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-CccCCCCCCeEEEEEecCCCCCC----ChhHHHHH-HHHH
Q 006874 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCLPEEDTVIFVVSTTGQGDT----PDSMKVFW-RFLL 81 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~~~l~~~~~vi~~~sT~g~G~~----p~~~~~F~-~~L~ 81 (628)
+++|+|+|+||||+++|+.|++.+.+. .+++.++++. +..++.+++.|||++||||.|.+ |+++..|+ ++|.
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~~--~~~~~~~~~~~~~~~l~~~d~ii~g~pt~~~G~~~~~~p~~~~~fl~~~l~ 78 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGAK--ADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGADTERSGTSWDEFLYDKLP 78 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGGG--BCCCEEGGGCSCGGGGGGCSEEEEEEECCSTTCSSCCSCSTHHHHHHHTGG
T ss_pred CEEEEEECCCchHHHHHHHHHHHhccC--CcEEEehhhcCChhHHccCCEEEEEEeecCCCCcCccCcHHHHHHHHhhcc
Confidence 589999999999999999999999764 5678888887 67788899999999999988999 99999999 8775
Q ss_pred hccCcccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCC-CC
Q 006874 82 QKSLSKQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ-HP 138 (628)
Q Consensus 82 ~~~~~~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~-~~ 138 (628)
... ++|++++|||+||++ |+ +||.+++.+++.|+++|++.+.+. +. +|.. .+
T Consensus 79 ~~~-----l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~ 153 (173)
T 2fcr_A 79 EVD-----MKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQ 153 (173)
T ss_dssp GCC-----CTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSCCTTEETTEESSEEEETTTCS
T ss_pred ccc-----cCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCcccccchhhhCCeeeeeeecCCCCc
Confidence 432 889999999999998 85 899999999999999999988652 11 2322 12
Q ss_pred CCchhhHHHHHHHHHHHH
Q 006874 139 SGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 139 ~g~~~~~~~W~~~l~~~l 156 (628)
+..++.++.|.+++.+.|
T Consensus 154 ~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 154 IPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 236888999999998776
No 43
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.84 E-value=8.9e-21 Score=173.49 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=118.7
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCCh-hHHHHHHHHHhccCcc
Q 006874 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPD-SMKVFWRFLLQKSLSK 87 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~-~~~~F~~~L~~~~~~~ 87 (628)
|+|+|+|+||||+++|+.|++.+.+.|++++++++++.+..++.+++.+||++|||+.|.+|+ +++.|+++|...
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~---- 76 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK---- 76 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG----
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh----
Confidence 589999999999999999999999999999999999998888999999999999998888887 999999998542
Q ss_pred cccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006874 88 QWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~ 153 (628)
++|+++++||+++..| |.+.+.+++.|+++|++.+.+...++..+++.. +.+++|.+++.
T Consensus 77 --l~~k~~~~f~t~g~~~---~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l~ 136 (138)
T 5nul_A 77 --ISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKIA 136 (138)
T ss_dssp --CTTCEEEEEEEESSSC---SHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHHH
T ss_pred --cCCCEEEEEEecCCCC---ChHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHHh
Confidence 7899999999865543 788999999999999999988888888766555 77777777654
No 44
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.83 E-value=1.2e-20 Score=178.73 Aligned_cols=143 Identities=23% Similarity=0.324 Sum_probs=121.7
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
|+++|+|+|+||||+++|+.|++.+.+. .++++++++++..++.+++.|||++|||+.|.+|+++..|+++|...
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~~~~~~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~--- 76 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND--VVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDV--- 76 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEETTTCCGGGGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGC---
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC--CcEEEEcccCCHHHHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhc---
Confidence 6799999999999999999999999754 68899999988888999999999999999999999999999987543
Q ss_pred ccccCCcEEEEEecCCc-Chh-HHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCC-CCCCchh
Q 006874 87 KQWLEGVRYAVFGLGDS-GYQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ-HPSGYEG 143 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds-~y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~-~~~g~~~ 143 (628)
.++|+++++||+|++ .|+ +||.+.+.+++.|+++|++.+... +. .+.. .++..++
T Consensus 77 --~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~ 154 (169)
T 1obo_A 77 --DFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDD 154 (169)
T ss_dssp --CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGGHHH
T ss_pred --CcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhhcCCceeeEEeeCCCccccCHH
Confidence 278999999999998 598 799999999999999999988641 11 2221 1223678
Q ss_pred hHHHHHHHHHHHH
Q 006874 144 ALDPWMRSLWRRL 156 (628)
Q Consensus 144 ~~~~W~~~l~~~l 156 (628)
.+++|.+++++.|
T Consensus 155 ~~~~w~~~~~~~l 167 (169)
T 1obo_A 155 RIKSWVAQLKSEF 167 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998877
No 45
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.82 E-value=1.3e-20 Score=178.54 Aligned_cols=144 Identities=25% Similarity=0.338 Sum_probs=122.1
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
|+++|+|+|+||||+++|+.|++.+... +.+++.++++++..++.+++.+||++|||+.|.+|++++.|+++|...
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~--- 76 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSV--- 76 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGCCGGGGGGCSEEEEECCEETTTEECHHHHHHGGGGGGS---
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhCCHhHHhhCCEEEEEecccCCCcCCHHHHHHHHHhhhh---
Confidence 5799999999999999999999999765 678999999888888889999999999998899999999999988543
Q ss_pred ccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc-------------------ee-eeCC-CCCCchh
Q 006874 87 KQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER-------------------GL-GDDQ-HPSGYEG 143 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~-------------------~~-~d~~-~~~g~~~ 143 (628)
.++|+++++||+|++. |+ +||.+.+.+++.|+++|++.+... +. +|.. .++..++
T Consensus 77 --~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~~~~~~~gl~~~~~~~~~~~~~ 154 (169)
T 1czn_A 77 --NFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKN 154 (169)
T ss_dssp --CCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTEETTEESSEEECTTTCGGGHHH
T ss_pred --ccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchheeCCeeeeeeecCCCccccCHH
Confidence 2889999999999995 98 799999999999999999988521 11 2322 1223688
Q ss_pred hHHHHHHHHHHHH
Q 006874 144 ALDPWMRSLWRRL 156 (628)
Q Consensus 144 ~~~~W~~~l~~~l 156 (628)
.+++|.+++++.|
T Consensus 155 ~~~~w~~~~~~~~ 167 (169)
T 1czn_A 155 RIKTWVSQLKSEF 167 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998766
No 46
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.82 E-value=1.1e-20 Score=180.24 Aligned_cols=144 Identities=22% Similarity=0.296 Sum_probs=119.8
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
|+++|+|+|+||||+++|+.|++.+... .+++.++++.+..++.+++.|||++|||+.|.+|+++..|+++|....
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~--~v~i~~~~~~~~~~l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~-- 76 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKD--VADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEID-- 76 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEEGGGCCHHHHHTCSEEEEECCEETTTEECHHHHHHHHHHTTCC--
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccC--ceEEEEcccCChhHhhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcc--
Confidence 5799999999999999999999999754 578889888777778899999999999989999999999999986432
Q ss_pred ccccCCcEEEEEecCCcC-hh-HHHHHHHHHHHHHHhcCCeEeecc--------------------ee-eeCCCC-CCch
Q 006874 87 KQWLEGVRYAVFGLGDSG-YQ-KFNFVAKKLDNRLLDLGATAVVER--------------------GL-GDDQHP-SGYE 142 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds~-y~-~f~~a~~~l~~~L~~lGa~~v~~~--------------------~~-~d~~~~-~g~~ 142 (628)
++|+++++||+||+. |+ +||.+.+.+++.|++.|++.+... +. .|..+. +..+
T Consensus 77 ---l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~~~~~~~gl~~~~~~~~~~~~ 153 (175)
T 1ag9_A 77 ---FNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTA 153 (175)
T ss_dssp ---CTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEEETTEESSEEECTTTCHHHHH
T ss_pred ---cCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchheeeCCeEEeeecCCCCcccccH
Confidence 889999999999985 84 899999999999999999988641 11 222111 1246
Q ss_pred hhHHHHHHHHHHHHH
Q 006874 143 GALDPWMRSLWRRLH 157 (628)
Q Consensus 143 ~~~~~W~~~l~~~l~ 157 (628)
+.+++|.++|++.+.
T Consensus 154 ~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 154 ERVEKWVKQISEELH 168 (175)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 788899999998874
No 47
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.79 E-value=1.2e-19 Score=170.76 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=120.9
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
|+++|+|+|+||||+++|+.|++.+.+.|++++++++.+.+..++ .+++.+||++|||+ |.+|. ..|++.|..
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p~--~~fl~~l~~ 77 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ-PSEAV--ATALSTIFA 77 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS-CCHHH--HHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC-CchhH--HHHHHHHHh
Confidence 579999999999999999999999999999999999998876655 37999999999995 77764 889988865
Q ss_pred ccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006874 83 KSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (628)
.. ++|+++++||+ |+|+|.+.+.+++.|+++|++.+.+...+...+++...+.+++|.+++.+.|.+.
T Consensus 78 ~~-----l~gk~v~~fgs----~g~~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~l~~~ 145 (161)
T 3hly_A 78 AA-----HNKQAIGLFDS----YGGDDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDLGQWLTRA 145 (161)
T ss_dssp HC-----CTTSEEEEECC----CCSSBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hh-----hCCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 43 78999999995 5667889999999999999999988777777766656788889999999988653
No 48
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.78 E-value=8.2e-20 Score=171.46 Aligned_cols=141 Identities=13% Similarity=0.050 Sum_probs=122.0
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-CccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-DARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L 80 (628)
+++|+|+|+|+||||+++|+.|++.+.+.|++++++++.+. +.+++ .+++.|||++|||+ |.+| +..|++.|
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~-g~~p--~~~~l~~l 80 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAA-SAAS--IQGALSTI 80 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTT-SHHH--HHHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCC-CCcc--HHHHHHHH
Confidence 56899999999999999999999999999999999999987 65543 46899999999996 8766 48899888
Q ss_pred HhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHh
Q 006874 81 LQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158 (628)
Q Consensus 81 ~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~ 158 (628)
.... ++|+.+++||+ |+|+|.+.+.+.+.|+++|++.+.+...++..+++...+.+++|.++|.+.+..
T Consensus 81 ~~~~-----~~~k~va~fgs----~g~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 81 LGSV-----NEKQAVGIFET----GGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp HHHC-----CTTSEEEEECC----SSSCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhc-----ccCCEEEEEEc----CCCCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6543 68999999994 567888899999999999999998888888877766778888999999988854
No 49
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.75 E-value=3.1e-19 Score=180.41 Aligned_cols=166 Identities=11% Similarity=0.058 Sum_probs=121.4
Q ss_pred CCCHHHHHHhcCC----CcccceeeccCCCCCCCeEEEEEEEEEeecCCCCccc-ccccHHhhCcCCCCCceEEEEeecC
Q 006874 390 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLDPQQGIYIPAWFQKG 464 (628)
Q Consensus 390 ~~p~~~l~~~lp~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~-G~~S~~L~~l~~~~G~~v~i~~~~g 464 (628)
..|+||+...+|. ...|+|||+|.+ . +.++|.|.+ ... |.+|+||+++++ ||+|.+.+|.|
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~--~-~~~~i~~~~---------~~~~G~~S~~l~~l~~--Gd~l~v~gP~G 104 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQR--D-DEIDVDFVL---------HDTDGPASSWAKTAQV--GELIQIGGPGL 104 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEE--T-TEEEEEEEC---------CSSCCHHHHHHHHCCT--TCEEEEEEEEC
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccC--C-CEEEEEEEE---------eCCCCcHHHHHhhCCC--CCEEEEecCCC
Confidence 3689998888874 467999999987 2 677777733 223 899999999999 99999999999
Q ss_pred CCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEE
Q 006874 465 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV 544 (628)
Q Consensus 465 ~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~ 544 (628)
.|.++....+++|||+|||||||++++++... . .++++|+++|+.+|.++ | ... ..+ +++.
T Consensus 105 ~f~l~~~~~~~lliagGtGitPi~s~l~~l~~---~---~~~~~~~~~~~~~d~~~---l---~~~-~~~------~v~~ 165 (252)
T 2gpj_A 105 KKLINFEADWFLLAGDMTALPAISVNLAKLPN---N---AVGYAVIEVLSEADIQP---L---VHP-EHV------ELHW 165 (252)
T ss_dssp CCCCCSSSSEEEEEEEGGGHHHHHHHHHHSCT---T---CEEEEEEEESSGGGCCC---C---CCC-TEE------EEEE
T ss_pred CCcCCCCCceEEEEcchhhHHHHHHHHHhCCC---C---CcEEEEEEECCHHHhhc---c---cCC-CCc------EEEE
Confidence 99988445799999999999999999998733 1 56789999999877553 1 111 334 6666
Q ss_pred EEecCCCC-ccchhhhHHHcHHHHHHHH-hCCCEEEEeCCCCCCHHHHHHHHH
Q 006874 545 AFSRKQPQ-KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFE 595 (628)
Q Consensus 545 a~Sr~~~~-k~yVqd~l~~~~~~v~~~l-~~~~~iyvCG~~~~M~~~v~~~L~ 595 (628)
+++.+... ...+.+.+.+. .+ ..+..+|+|||+ .|++.+++.|.
T Consensus 166 ~~~~~~~~~g~~~~~~l~~~------~~~~~~~~vy~CGP~-~m~~av~~~l~ 211 (252)
T 2gpj_A 166 VINPEADPEGRPLVERIAQL------PWLAGEPAVWIACEF-NSMRALRRHFK 211 (252)
T ss_dssp EECSSCCTTCHHHHHHHTTS------CCCSSCEEEEEEEEH-HHHHHHHHHHH
T ss_pred EeCCCCCcccHHHHHHHHhc------cCCCCCcEEEEEcCH-HHHHHHHHHHH
Confidence 66554321 22333333221 01 125689999998 99999988886
No 50
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.74 E-value=9.8e-18 Score=152.55 Aligned_cols=132 Identities=20% Similarity=0.237 Sum_probs=113.9
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCCh-hHHHHHHHHHhccCcc
Q 006874 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPD-SMKVFWRFLLQKSLSK 87 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~-~~~~F~~~L~~~~~~~ 87 (628)
++|+|+|.||||+++|+.|++.+.+.|++++++++++.+..++.++|.+||++|||+.|.+|+ +++.|++++..
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~----- 76 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP----- 76 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-----
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-----
Confidence 789999999999999999999999999999999999988778889999999999998777777 49999999853
Q ss_pred cccCCcEEEEEecCCcChhH-HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006874 88 QWLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds~y~~-f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~ 153 (628)
.++|+++++||+ |++ ||.+.+.+++.|+.+|++.+ +...++...++ .+.+++|.+++.
T Consensus 77 -~l~~k~~~~~~t----~g~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~~--~~~~~~~~~~l~ 135 (137)
T 2fz5_A 77 -KLKGKKVGLFGS----YGWGSGEWMDAWKQRTEDTGATVI-GTAIVNEMPDN--APECKELGEAAA 135 (137)
T ss_dssp -GCSSCEEEEEEE----ESSCCSHHHHHHHHHHHHTTCEEE-EEEEEESSSSS--CTHHHHHHHHHH
T ss_pred -hcCCCEEEEEEe----cCCCCchHHHHHHHHHHHCCCEEc-CcEEEeeCCCh--HHHHHHHHHHHh
Confidence 278999999996 333 78899999999999999988 66677665443 778888888765
No 51
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.74 E-value=2.8e-18 Score=152.96 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=90.0
Q ss_pred EEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccc
Q 006874 9 LLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQ 88 (628)
Q Consensus 9 v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~ 88 (628)
++|+|+|+||||+++|+.|+ +. | + ++++ ..+ .++.+||++||||+|++|+++..|++.
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~~--~--~---~i~~---~~~-~~~~ii~g~pt~~~g~~p~~~~~fl~~--------- 58 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--MP--A--V---QIGE---DLV-IDEDFILITYTTGFGNVPERVLEFLER--------- 58 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--SC--E--E---ECCT---TCC-CCSCEEEEECCBTTTBCCHHHHHHHHH---------
T ss_pred CEEEEECCChhHHHHHHHhc--cc--C--C---CcCc---ccc-cCCCEEEEEeecCCCcCCHHHHHHHHH---------
Confidence 47999999999999999999 32 3 2 3333 233 589999999999999999999999865
Q ss_pred ccCCcEEEEEecCCcChhH-HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHH
Q 006874 89 WLEGVRYAVFGLGDSGYQK-FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLW 153 (628)
Q Consensus 89 ~l~~~~~aVfGlGds~y~~-f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~ 153 (628)
+++++++|||+||++|++ ||.+++.++++|.. .. ...++..+++...+.+++|.++++
T Consensus 59 -~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~~---~~---~~~~~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 59 -NNEKLKGVSASGNRNWGDMFGASADKISAKYEV---PI---VSKFELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp -HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CE---EEEEETTCCHHHHHHHHHHHHHHT
T ss_pred -cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhCC---cc---EEEEecCCCHHHHHHHHHHHHHhc
Confidence 457899999999999997 99999999999743 22 233443333335567889988875
No 52
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.69 E-value=1e-17 Score=156.97 Aligned_cols=125 Identities=10% Similarity=0.006 Sum_probs=84.6
Q ss_pred cCCCCCce-EEEEeecCCCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHh
Q 006874 449 LDPQQGIY-IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 527 (628)
Q Consensus 449 l~~~~G~~-v~i~~~~g~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~ 527 (628)
|++ ||+ |.+.+|.|+|...+..+|++|||+||||||+++++++....+ .+++|+ |+|+++|.+|.+||+++
T Consensus 1 L~~--Gd~vl~v~gP~G~~f~~~~~~~~llIaGG~GItPl~sm~~~l~~~~-----~~v~l~-g~r~~~d~~~~~el~~l 72 (158)
T 3lrx_A 1 MKE--GDSLLNVAGPLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIG-----NDVTTL-HVTFEPMVILKEELEKA 72 (158)
T ss_dssp -------------CCCCCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHHT-----CEEEEE-EECBGGGCCSHHHHHHH
T ss_pred CcC--CCEeeEEECCCCCCCccCCCCeEEEEEccCcHHHHHHHHHHHHhcC-----CcEEEE-EeCCHHHhhHHHHHHHH
Confidence 456 999 599999998654445689999999999999999999987654 579999 99999999999999987
Q ss_pred HhcCCCcccCCCCcEEEEEecCC--------CCccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 528 SLNDGVFSEAKGGGFYVAFSRKQ--------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 528 ~~~~g~l~~~~~~~~~~a~Sr~~--------~~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
..+ + .+..++++.. ..+++|++.+.+.... .+...||+|||+ .|.+.+.+.|.+
T Consensus 73 ~~~---~------~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l~~-----~~~~~vy~CGP~-~mm~~v~~~l~~ 134 (158)
T 3lrx_A 73 VTR---H------IVEPVPLNPNQDFLANMKNVSQRLKEKVRELLES-----EDWDLVFMVGPV-GDQKQVFEVVKE 134 (158)
T ss_dssp SSE---E------EECCBCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----SCCSEEEEESCH-HHHHHHHHHHGG
T ss_pred Hhc---e------EEEEeeccccccCCCCCCCCcccccHHHHHhhcc-----CCCCEEEEECCH-HHHHHHHHHHHH
Confidence 643 2 2222233211 1256777655443211 246789999998 999988877654
No 53
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.66 E-value=6.2e-17 Score=147.85 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=92.3
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL 85 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~ 85 (628)
.|++.|+|+|.||||+++|++|+..+ .+++.+ .+..++.+|+++||||.|++|+++.+|++.
T Consensus 8 ~m~i~I~Y~S~TGNt~~vA~~l~~~~--------~~~i~~----~~~~~~~~ilv~pTyG~G~~P~~v~~Fl~~------ 69 (139)
T 1rlj_A 8 NAMVQIIFDSKTGNVQRFVNKTGFQQ--------IRKVDE----MDHVDTPFVLVTYTTNFGQVPASTQSFLEK------ 69 (139)
T ss_dssp HSCCEEEECCSSSHHHHHHTTSCCSE--------EEETTS----CSCCCSCEEEEECCBGGGBCCHHHHHHHHH------
T ss_pred CCEEEEEEECCChhHHHHHHHhcccc--------ceEecc----ccccCCCEEEEEcCcCCCcCcHHHHHHHHh------
Confidence 45689999999999999999997421 234433 356678899999999999999999999853
Q ss_pred cccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006874 86 SKQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 86 ~~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
..++.|+|+|+||++|+ .||.+++.+++++ |...+. ..+.+ ....+.+.+.+|++++|.+-
T Consensus 70 ----~~~~~~~V~g~Gd~~yg~~f~~a~~~i~~~~---~~~~~~-~~el~--g~~~D~~~~~~~~~~~~~~~ 131 (139)
T 1rlj_A 70 ----YAHLLLGVAASGNKVWGDNFAKSADTISRQY---QVPILH-KFELS--GTSKDVELFTQEVERVVTKS 131 (139)
T ss_dssp ----HGGGEEEEEEEECGGGGGGTTHHHHHHHHHH---TCCEEE-EEETT--CCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCEEEEEecCCCcHHHHHHHHHHHHHHHc---CCCCcc-eEEEc--CCHHHHHHHHHHHHHHHHHh
Confidence 13478999999999995 7999999988776 444332 22332 22225677889999988643
No 54
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.64 E-value=2.1e-16 Score=145.30 Aligned_cols=120 Identities=10% Similarity=-0.004 Sum_probs=86.0
Q ss_pred EEEEeecCCCCCCCCCCCEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCccc
Q 006874 457 IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSE 536 (628)
Q Consensus 457 v~i~~~~g~F~lp~~~~piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~ 536 (628)
+.+.+|.|+|...+..++++|||+||||||+++++++....+ .+++++ |+|+++|++|.+||+++.++ +
T Consensus 3 ~~v~GP~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~~-----~~v~l~-g~R~~~~~~~~~el~~l~~~---~-- 71 (142)
T 3lyu_A 3 LNVAGPLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIG-----NDVTTL-HVTFEPMVILKEELEKAVTR---H-- 71 (142)
T ss_dssp ----CCCSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHTT-----CEEEEE-EEEEGGGCCSHHHHHTTSSE---E--
T ss_pred eeeeCCCCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhcC-----CcEEEE-EeCCHHHhhHHHHHHHHHhh---e--
Confidence 468899998765544689999999999999999999987654 578999 99999999999999987654 2
Q ss_pred CCCCcEEEEEecCCC--------CccchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHH
Q 006874 537 AKGGGFYVAFSRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI 597 (628)
Q Consensus 537 ~~~~~~~~a~Sr~~~--------~k~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i 597 (628)
.+..++++... .+++|++.+.+.... .+...||+|||+ .|.+.|.+.+.+.
T Consensus 72 ----~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~~~-----~~~~~vy~CGP~-~Mm~av~~~l~~~ 130 (142)
T 3lyu_A 72 ----IVEPVPLNPNQDFLANMKNVSQRLKEKVRELLES-----EDWDLVFMVGPV-GDQKQVFEVVKEY 130 (142)
T ss_dssp ----EEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHS-----SCCSEEEEESCH-HHHHHHHHHHHHH
T ss_pred ----EEEEeecccccCCCCCCCCCccchhHHHHHhccc-----CCCCEEEEECCH-HHHHHHHHHHHHc
Confidence 33334443211 256676655443111 235689999998 9999888777653
No 55
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.62 E-value=1e-16 Score=153.43 Aligned_cols=133 Identities=14% Similarity=0.228 Sum_probs=91.4
Q ss_pred EEEeecCCCCCC-CCCCCEEEEeCCCChHHHHHHHHHHHHhcC----CCCCCCeEEEEcCCCCCccc-cHHHHHHhHhcC
Q 006874 458 PAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS----SGPAAPIIFFFGCRNEDDFL-YRELWLSHSLND 531 (628)
Q Consensus 458 ~i~~~~g~F~lp-~~~~piimIa~GtGIAPfrs~l~~~~~~~~----~~~~~~~~L~~G~R~~~d~l-y~~el~~~~~~~ 531 (628)
.+.+|.|.|.++ ....|+||||+|||||||+++++++..... .....+++|+||+|+.++++ |.+||+++.+.+
T Consensus 2 ~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~~ 81 (186)
T 3a1f_A 2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQM 81 (186)
T ss_dssp CTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHHH
T ss_pred eEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHHH
Confidence 456788988765 566899999999999999999999876520 00137899999999999988 999999998752
Q ss_pred ------CCcccCCCCcEEEEEecCCC---Cccchhh-----hHH----------HcHHH----HHHHHh-CCCEEEEeCC
Q 006874 532 ------GVFSEAKGGGFYVAFSRKQP---QKVYVQH-----KML----------EQSQR----IWNLLL-SKASIYVAGS 582 (628)
Q Consensus 532 ------g~l~~~~~~~~~~a~Sr~~~---~k~yVqd-----~l~----------~~~~~----v~~~l~-~~~~iyvCG~ 582 (628)
+++ ++++++|++.. .+.|++. .+. -+.+. +..... .+..||+|||
T Consensus 82 ~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP 155 (186)
T 3a1f_A 82 QERNNAGFL------SYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP 155 (186)
T ss_dssp HHTTCTTSE------EEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred hhccCCCeE------EEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 356 78889998532 1223321 000 00111 111122 3678999999
Q ss_pred CCCCHHHHHHHHHHH
Q 006874 583 ATKMPSDVWSTFEEI 597 (628)
Q Consensus 583 ~~~M~~~v~~~L~~i 597 (628)
+ .|.++|+++|.+.
T Consensus 156 ~-~m~~~v~~~l~~~ 169 (186)
T 3a1f_A 156 E-ALAETLSKQSISN 169 (186)
T ss_dssp H-HHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHh
Confidence 8 9999999888764
No 56
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=99.55 E-value=2e-14 Score=139.28 Aligned_cols=124 Identities=22% Similarity=0.141 Sum_probs=103.2
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC-------------------CccCCCCCCeEEEEEecCC
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY-------------------DARCLPEEDTVIFVVSTTG 65 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~-------------------~~~~l~~~~~vi~~~sT~g 65 (628)
.||+|+|+|+|.+|||+++|+.+++.+.+.|++++++++.+. ...++.++|.|||++|+|
T Consensus 4 ~M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y- 82 (200)
T 2a5l_A 4 SSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTR- 82 (200)
T ss_dssp -CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECB-
T ss_pred CcceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChh-
Confidence 478999999999999999999999999999999999999872 233456899999999999
Q ss_pred CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc
Q 006874 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER 130 (628)
Q Consensus 66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~ 130 (628)
.|.+|..++.|++++.... ....++|+++++|+.+...+..++.+.+.+.+.|..+|+..+.+.
T Consensus 83 ~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 146 (200)
T 2a5l_A 83 FGNMASPLKYFLDGTSSLW-LTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIP 146 (200)
T ss_dssp TTBCCHHHHHHHHTCHHHH-HHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCC
T ss_pred ccCccHHHHHHHHHHHHHh-hccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCC
Confidence 7999999999999875421 112378999999999877666667788999999999999987543
No 57
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.55 E-value=9.9e-15 Score=157.06 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=110.9
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC---c----cCCCCCCeEEEEEecCCCCCCChhHHHHH
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---A----RCLPEEDTVIFVVSTTGQGDTPDSMKVFW 77 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~---~----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~ 77 (628)
+.++|+|+|+|++|||+++|+.|++.+.+.|+++.++.+.+.+ . .++.+++.+||++||| +|++++.+..|+
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~-~~~~~p~~~~~l 342 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY-EAEIHPLMRFTL 342 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT-TSSSCHHHHHHH
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc-CCcCCHHHHHHH
Confidence 3568999999999999999999999999999987766554433 2 3466899999999999 688889999999
Q ss_pred HHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006874 78 RFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
..+.... ++|+.+++|| +|+|.+.+.+.+.++|+++|++.+.+ ..+..... .++.+++-.+.+.+.|
T Consensus 343 ~~l~~~~-----~~~K~~~~FG----SyGWsg~a~~~~~~~l~~~~~~~v~~-~~~~~~~~--de~~lee~~~~~~~~l 409 (410)
T 4dik_A 343 LEIIDKA-----NYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSF-TEIKGSNM--DERKIEEAISLLKKEL 409 (410)
T ss_dssp HHHHHHC-----CCCCEEEEEE----ECCCCCTTSCCHHHHHTTSSCEEEEE-EEECSTTC--CHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-----cCCCEEEEEE----CCCCCcHHHHHHHHHHHHCCCEEECc-EEEECCCC--CHHHHHHHHHHHHHhh
Confidence 9887654 6799999999 68899999999999999999998765 44444433 3556666555544443
No 58
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.54 E-value=3.1e-14 Score=137.04 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=118.0
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHh-CCCCcEEeeCCCCCccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhc
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQK 83 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~-~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~ 83 (628)
.||+|+|+|+|.||||+++|+.|++.+.+ .|++++++++.+.+..++.++|.|||++||| .|.+|+.++.|++++...
T Consensus 3 ~M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y-~g~~~~~lk~fld~~~~~ 81 (188)
T 2ark_A 3 AMGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTN-MGLVSWKMKRFFDDVLGD 81 (188)
T ss_dssp CCEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHTGGG
T ss_pred CCCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCcc-CCcCCHHHHHHHHHHhhh
Confidence 57899999999999999999999999998 8999999999998877888999999999999 899999999999998541
Q ss_pred cCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeec------cee------eeCCCC-CCchhhHHHHH
Q 006874 84 SLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVE------RGL------GDDQHP-SGYEGALDPWM 149 (628)
Q Consensus 84 ~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~------~~~------~d~~~~-~g~~~~~~~W~ 149 (628)
.. ..++|+++++||+ |+.. +.+..+.+.+.+.|..+|+..+.. ... .....+ +...+.+..|.
T Consensus 82 ~~--~~l~gk~~~~~~t~g~~~-g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~g 158 (188)
T 2ark_A 82 LW--GEIDGKIACAFSSSGGWG-GGNEVACMSILTMLMNFGFLVFGVTDYVGKKFTLHYGAVVAGEPRSEEEKEACRRLG 158 (188)
T ss_dssp TT--TSCTTCEEEEEEEESSBT-SSHHHHHHHHHHHHHHTTCEECCEEEEEETTEEESSSEEEESSCCSHHHHHHHHHHH
T ss_pred hH--HHhCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHHCCcEEeCCCccccccccCCCcceeecCCCcHHHHHHHHHHH
Confidence 10 2378999999998 5432 224566778888888899876531 111 112222 22456777899
Q ss_pred HHHHHHHHhhC
Q 006874 150 RSLWRRLHQID 160 (628)
Q Consensus 150 ~~l~~~l~~~~ 160 (628)
+++.+.+....
T Consensus 159 ~~la~~~~~~~ 169 (188)
T 2ark_A 159 RRLAEWVAIFV 169 (188)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99888886543
No 59
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=99.54 E-value=2e-14 Score=131.15 Aligned_cols=126 Identities=14% Similarity=0.238 Sum_probs=90.8
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCCeEEEEEecCC----CCCCChhHHHHHHHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLPEEDTVIFVVSTTG----QGDTPDSMKVFWRFLL 81 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~~vi~~~sT~g----~G~~p~~~~~F~~~L~ 81 (628)
||..+|+|+|.||||++++++|.. +..-+++.+ ..++..++.+|+++|||| .|+.|+.+.+|++.+.
T Consensus 20 ~~~~ivYfsS~TGNT~rFv~kL~~-------~~~~I~~~~--~~~~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~ 90 (153)
T 3n3a_C 20 HMSQLVYFSSSSENTQRFIERLGL-------PAVRIPLNE--RERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH 90 (153)
T ss_dssp ---CEEECCCTTCHHHHHHHHHCS-------CCEECCSST--TCCCCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH
T ss_pred cceeEEEEECCCcCHHHHHHHhCC-------ccccccccc--CcccccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc
Confidence 455578999999999999999843 222223332 234556778999999998 5999999999997653
Q ss_pred hccCcccccCCcEEEEEecCCcCh-hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHH
Q 006874 82 QKSLSKQWLEGVRYAVFGLGDSGY-QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWR 154 (628)
Q Consensus 82 ~~~~~~~~l~~~~~aVfGlGds~y-~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~ 154 (628)
+ .++.++|+|+||++| ..||.|++.+.+++.. ..+ ..++-..++.+.+.+.+|++++|+
T Consensus 91 n--------~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~~v---P~l---~kfEL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 91 N--------RALLRGVIASGNRNFGEAYGRAGDVIARKCGV---PWL---YRFELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp H--------HHHEEEEEEEECGGGGGGTTHHHHHHHHHHTC---CEE---EEEETTCCHHHHHHHHHHHHHHHH
T ss_pred c--------cCcEEEEEecCCCchhHHHHHHHHHHHHHhCC---CeE---EEEeCCCCHHHHHHHHHHHHHHHh
Confidence 2 256899999999999 5899999999999862 211 344444433356677777777775
No 60
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.52 E-value=3e-14 Score=153.16 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=120.1
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~ 81 (628)
+++++|+|+|+||||+++|+.|++.+.+.|+.++++++++.+..++ .+++.+||++|||+. ..|+.++.|++++.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~~-~~~~~~~~~l~~l~ 330 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHNN-GILPYVAGTLQYIK 330 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBTT-BCCHHHHHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCC-CchHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999998775553 689999999999954 45667999999986
Q ss_pred hccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHh
Q 006874 82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQ 158 (628)
Q Consensus 82 ~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~ 158 (628)
... ++|+.+++||. |+++|.+.+.+.+.|..+|++.+.+...++...++...+.+.+|.+++.+.+++
T Consensus 331 ~~~-----l~~k~~~~f~t----~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~ 398 (402)
T 1e5d_A 331 GLR-----PQNKIGGAFGS----FGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKA 398 (402)
T ss_dssp HTC-----CCSCEEEEEEE----ESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-----cCCCEEEEEEc----CCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHHHHHHhh
Confidence 543 78999999995 667899999999999999999987666676654444566778898888887754
No 61
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.50 E-value=1.9e-14 Score=154.57 Aligned_cols=141 Identities=16% Similarity=0.045 Sum_probs=115.7
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC----CCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL----PEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l----~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~ 81 (628)
+++++|+|+|+||||+++|+.+++.+.+.|+.++++++.+.+..++ .+++.+||++|||+ |..|+.++.|++++.
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~-~~~~~~~~~~l~~l~ 329 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTIN-NDILPVVSPLLDDLV 329 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBT-TBCCGGGHHHHHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC-ccchHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999987765443 58899999999995 555557999999986
Q ss_pred hccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecc-eeeeCCCCCCchhhHHHHHHHHHHHH
Q 006874 82 QKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVER-GLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 82 ~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~-~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
... ++|+.+++||+ |+++|.+.+.+++.|+.+|++.+.+. ..++...++...+.+++|.+++.+.+
T Consensus 330 ~~~-----~~~k~~~~~~s----~g~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~ 396 (398)
T 1ycg_A 330 GLR-----PKNKVGLAFGA----YGWGGGAQKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKIAARI 396 (398)
T ss_dssp HHC-----CSSCEEEEEEE----ESSSCCHHHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccc-----cCCCEEEEEEe----CCCchHHHHHHHHHHHHCCeEEecCceEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 543 78999999994 67789999999999999999998765 66665544334566667777776654
No 62
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=99.48 E-value=1.4e-13 Score=133.04 Aligned_cols=121 Identities=23% Similarity=0.243 Sum_probs=99.4
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHh-CCCCcEEeeCCCC-------------------CccCCCCCCeEEEEEecCC
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESER-RGCPVVVRPVDDY-------------------DARCLPEEDTVIFVVSTTG 65 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~-~g~~v~~~~l~~~-------------------~~~~l~~~~~vi~~~sT~g 65 (628)
||+|+|+|+|.+|||+++|+.|++.+.+ .|++++++++.+. ...++.++|.|||++|||
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y- 79 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTR- 79 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEE-
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChh-
Confidence 5789999999999999999999999998 8999999999763 245677899999999999
Q ss_pred CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006874 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
.|.+|..++.|++++.... ....++|+++++|+.+... +....+.+.+...|..+|+..+.+
T Consensus 80 ~~~~~~~lk~~ld~~~~~~-~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~ 141 (198)
T 3b6i_A 80 FGNMSGQMRTFLDQTGGLW-ASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPI 141 (198)
T ss_dssp TTEECHHHHHHHTTCHHHH-HHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCC
T ss_pred cCCchHHHHHHHHHhhhhh-hhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECC
Confidence 8999999999999875321 1123789999999987654 445567788888999999987754
No 63
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.47 E-value=7.8e-14 Score=150.01 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=118.9
Q ss_pred cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----CCCCCCeEEEEEecCCCCCCChhHHHHHHH
Q 006874 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRF 79 (628)
Q Consensus 4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~ 79 (628)
+++++++|+|+|.||||+++|+.|++.+.+.|++++++++.+.+.. ++.++|.+||++||| .|.+|+.++.|+++
T Consensus 254 ~~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y-~~~~~~~~k~~ld~ 332 (404)
T 2ohh_A 254 MVDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTI-YDEPYPSVGDLLMY 332 (404)
T ss_dssp CCCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEE-TTEECTHHHHHHHH
T ss_pred CCCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccc-cccchHHHHHHHHH
Confidence 4568999999999999999999999999988999999999987754 567899999999999 68888889999999
Q ss_pred HHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006874 80 LLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 80 L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
+....... ++|+++++||+|+.. +.+.+.+.+.|..+|++.+.+ ..++...++...+.+++|.+++.+.+
T Consensus 333 l~~~~~~~--l~~k~~~~~~~~g~~----~~a~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
T 2ohh_A 333 LRGLKFNR--TLTRKALVFGSMGGN----GGATGTMKELLAEAGFDVACE-EEVYYVPTGDELDACFEAGRKLAAEI 402 (404)
T ss_dssp HHHHCGGG--TCCEEEEEEEEESSS----CCHHHHHHHHHHHTTEEEEEE-EEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccc--cCCCEEEEEEecCCC----ChhHHHHHHHHHHCCCEEEeE-EEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 87543222 689999999986543 567889999999999998876 55555443335667778888877655
No 64
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.46 E-value=1.3e-13 Score=148.99 Aligned_cols=144 Identities=16% Similarity=0.074 Sum_probs=118.6
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----CCCCCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDAR----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFL 80 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L 80 (628)
.|++++|+|+|.||||+++|+.|++.+.+.|++++++++.+.+.. ++.++|.|||++||| .|.+|+.++.|++++
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y-~~~~~~~~k~fld~l 333 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTL-NNTMMPSVAAALNYV 333 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCB-TTBCCHHHHHHHHHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCcc-CcCchHHHHHHHHHH
Confidence 478999999999999999999999999999999999999887754 577999999999999 778888899999998
Q ss_pred HhccCccccc-CCcEEEEEecCCcChhHHHHHHHHHHHHHHh-cCCeEeecc-eeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006874 81 LQKSLSKQWL-EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLD-LGATAVVER-GLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 81 ~~~~~~~~~l-~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~-lGa~~v~~~-~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
.... + +|+++++||+|... +.+.+.+.+.|.. +|++.+.+. ..+....++...+.+.+|.+++.+.+.
T Consensus 334 ~~~~-----~~~~K~~~~~~t~g~~----~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~g~~l~~~~~ 404 (414)
T 2q9u_A 334 RGLT-----LIKGKPAFAFGAFGWS----NRAVPDIVAELRDGCKADVYDEKGITFKFNYTEELLEQAYNAGVDLGKRAI 404 (414)
T ss_dssp HHHT-----TTTTSBEEEEEEESSS----CCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhc-----ccCCCEEEEEEecCCC----chhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 6543 5 79999999986543 5577899999999 999988754 455554444456777788888877664
Q ss_pred h
Q 006874 158 Q 158 (628)
Q Consensus 158 ~ 158 (628)
.
T Consensus 405 ~ 405 (414)
T 2q9u_A 405 A 405 (414)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=99.43 E-value=6.3e-14 Score=135.51 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=94.0
Q ss_pred CCccCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC---CCc---cCCCCCCeEEEEEecCCCCCCChhHH
Q 006874 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD---YDA---RCLPEEDTVIFVVSTTGQGDTPDSMK 74 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~---~~~---~~l~~~~~vi~~~sT~g~G~~p~~~~ 74 (628)
|+...|++|+|+|+|.||||+++|+.|++.+.+.+ +++.+ ++. .++.++|.|||++||| .|.+|..++
T Consensus 1 ~~~~~~~kiliiy~S~~GnT~~lA~~ia~~l~~~~-----~~v~~~~~~~~~~~~~l~~~D~ii~gsP~y-~g~~~~~~k 74 (193)
T 3d7n_A 1 MTTNSSSNTVVVYHSGYGHTHRMAEAVAEGAEATL-----HAIDAEGNLSEDGWAALDAADAIIFGTPTY-MGGPSWQFK 74 (193)
T ss_dssp -----CCCEEEEECCSSSHHHHHHHHHHHHHTCEE-----EECCTTSCCCHHHHHHHHHCSEEEEEEEEE-TTEECHHHH
T ss_pred CCCCCCCEEEEEEECCChHHHHHHHHHHHHhhhcc-----eEeeecCCCCHhHHHHHHHCCEEEEEeCcc-CCCccHHHH
Confidence 78778999999999999999999999999997643 34433 221 4566899999999999 699999999
Q ss_pred HHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006874 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 75 ~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
.|++++...- ....++|+++++|+++...++.+..+...+...|..+|+..+.
T Consensus 75 ~fld~~~~~~-~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg 127 (193)
T 3d7n_A 75 KFADASSKPW-FSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVS 127 (193)
T ss_dssp HHHHHTHHHH-HTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHhhhhc-cccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 9999875211 0123789999999998777777778889999999999988653
No 66
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=99.43 E-value=2.6e-13 Score=131.48 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=114.2
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC--------------------CccCCCCCCeEEEEEecC
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY--------------------DARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~--------------------~~~~l~~~~~vi~~~sT~ 64 (628)
.||+|+|+|+| +|||+++|+.+++.+.+.|.+++++++.+. ...++.++|.|||++|+|
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y 81 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTR 81 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECB
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECCcc
Confidence 46899999999 999999999999999988999999998875 122345789999999999
Q ss_pred CCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee------------
Q 006874 65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL------------ 132 (628)
Q Consensus 65 g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~------------ 132 (628)
.|.+|..++.|++++.... ....++|+++++|+.+...++....+.+.+...|..+|+..+.....
T Consensus 82 -~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 159 (199)
T 2zki_A 82 -YGNMAGGLKTFLDTTAILW-KDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGIPELFQTTTGGG 159 (199)
T ss_dssp -TTBCCHHHHHHHHTTHHHH-HTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCCTTCSTHHHHCSSSCC
T ss_pred -ccCccHHHHHHHHHhhhcc-cccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCCCcCCccccccccCCC
Confidence 7999999999999874321 11238899999999866554434567889999999999987754321
Q ss_pred ------ee--CCCCCCchhhHHHHHHHHHHHHHh
Q 006874 133 ------GD--DQHPSGYEGALDPWMRSLWRRLHQ 158 (628)
Q Consensus 133 ------~d--~~~~~g~~~~~~~W~~~l~~~l~~ 158 (628)
+. +..++...+.+..|.+++.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~~~ 193 (199)
T 2zki_A 160 PYGATHLGSKEELDEMERKIARFQGKRITEVAKA 193 (199)
T ss_dssp SSCCCCBSSCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 10 022222456677888888877654
No 67
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=99.42 E-value=2.8e-13 Score=132.60 Aligned_cols=156 Identities=16% Similarity=0.119 Sum_probs=116.1
Q ss_pred CCccCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC--------------------C-----ccCCCCCC
Q 006874 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY--------------------D-----ARCLPEED 55 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~--------------------~-----~~~l~~~~ 55 (628)
|.-..||+|+|+|+|.+|||+++|+.|++.+.+.|.+++++++.+. + ..++.++|
T Consensus 1 ~~~~~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD 80 (211)
T 1ydg_A 1 MSLTAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAE 80 (211)
T ss_dssp ----CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCS
T ss_pred CCcCCCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCC
Confidence 4545689999999999999999999999999999999999999774 2 12344789
Q ss_pred eEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeeccee---
Q 006874 56 TVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGL--- 132 (628)
Q Consensus 56 ~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~--- 132 (628)
.|||++|+| .|.+|..++.|++++.... ....++|+++++|+.+...+.....+...+...|..+|+..+.+...
T Consensus 81 ~ii~gsP~y-~~~~~~~lk~~ld~~~~~~-~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~~~ 158 (211)
T 1ydg_A 81 AIVFSSPTR-FGGATSQMRAFIDTLGGLW-SSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEV 158 (211)
T ss_dssp EEEEEEEEE-TTEECHHHHHHHHTTHHHH-HTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCSHH
T ss_pred EEEEEcCcc-ccCccHHHHHHHHHhcccc-ccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCCCCCChh
Confidence 999999999 7999999999999875320 11237899999999876655444677889999999999987754211
Q ss_pred -------------ee--CCCCCCchhhHHHHHHHHHHHHHh
Q 006874 133 -------------GD--DQHPSGYEGALDPWMRSLWRRLHQ 158 (628)
Q Consensus 133 -------------~d--~~~~~g~~~~~~~W~~~l~~~l~~ 158 (628)
+. ...++...+.+.+|.++|.+.+..
T Consensus 159 ~~~~~~~~~g~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~ 199 (211)
T 1ydg_A 159 IFKSGGNPYGASVTANGQPLLENDRASIRHQVRRQVELTAK 199 (211)
T ss_dssp HHHTTCCSSSCEEECCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCccceeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 111223456677888888877654
No 68
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.36 E-value=4.9e-12 Score=119.74 Aligned_cols=126 Identities=21% Similarity=0.242 Sum_probs=93.3
Q ss_pred cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC---C-----------------------------ccCC
Q 006874 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---D-----------------------------ARCL 51 (628)
Q Consensus 4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~---~-----------------------------~~~l 51 (628)
+.+|+++|+|.|.||||+++|+.|++.+.. .++++... + ..++
T Consensus 11 ~~~mkilIvY~S~tGnT~~vA~~Ia~~l~~-----d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l 85 (171)
T 4ici_A 11 HSNSKILVAYFSATGTTARAAEKLGAAVGG-----DLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENI 85 (171)
T ss_dssp --CCCEEEEECCSSSHHHHHHHHHHHHHTC-----EEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTG
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHhCC-----CeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccH
Confidence 457899999999999999999999999852 34444321 1 1356
Q ss_pred CCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecce
Q 006874 52 PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (628)
Q Consensus 52 ~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~ 131 (628)
.++|.|||++||| .|.+|+.+..|++.+ . ++|+++++|+++... .++.+.+.+.+.|. |++ +.+..
T Consensus 86 ~~yD~iilg~Pvy-~g~~~~~~~~fl~~~---~-----l~gk~v~~f~t~g~~--~~g~a~~~l~~~l~--~~~-~~~g~ 151 (171)
T 4ici_A 86 GTYDVVFIGYPIW-WDLAPRIINTFIEGH---S-----LKGKTVVPFATSGGS--SIGNSATVLKKTYP--DLN-WKEGR 151 (171)
T ss_dssp GGCSEEEEEEECB-TTBCCHHHHHHHHHS---C-----CTTSEEEEEEECSSC--CSHHHHHHHHHHST--TSE-ECCCE
T ss_pred hHCCEEEEecccc-cCCchHHHHHHHHHc---C-----CCcCEEEEEEecCCC--CcchHHHHHHHHcC--CCe-eccCe
Confidence 6899999999999 699999999998875 2 789999999974321 24567788887775 555 44555
Q ss_pred eeeCCCCCCchhhHHHHHHHH
Q 006874 132 LGDDQHPSGYEGALDPWMRSL 152 (628)
Q Consensus 132 ~~d~~~~~g~~~~~~~W~~~l 152 (628)
.++.. .+.++..|++++
T Consensus 152 ~~~~~----~~~~i~~Wl~~~ 168 (171)
T 4ici_A 152 LLNRT----DEKAIRAWLDVI 168 (171)
T ss_dssp ECSSC----CHHHHHHHHHHH
T ss_pred EecCC----CHHHHHHHHHHh
Confidence 55542 467899999875
No 69
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.31 E-value=1.6e-12 Score=125.94 Aligned_cols=121 Identities=18% Similarity=0.103 Sum_probs=97.9
Q ss_pred CCcEEEEEECC--cchHHHHHHHHHHH-HHhCCCCcEEeeCCCCCc-----------------cCCCCCCeEEEEEecCC
Q 006874 6 RNKLLILYASQ--TGNALDAAERIGRE-SERRGCPVVVRPVDDYDA-----------------RCLPEEDTVIFVVSTTG 65 (628)
Q Consensus 6 ~~~v~I~Y~S~--tGnte~~A~~l~~~-l~~~g~~v~~~~l~~~~~-----------------~~l~~~~~vi~~~sT~g 65 (628)
||+|+|+|||. +|||+++|+.+++. +.+.|.+++++++.+++. .++.++|.+||++|+|
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y- 80 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIY- 80 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECB-
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCcc-
Confidence 57999999997 89999999999999 998899999999987642 2355899999999999
Q ss_pred CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceee
Q 006874 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG 133 (628)
Q Consensus 66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~ 133 (628)
.|.+|..++.|++++... .++|+++++|+.|... ..++.....+...|..+|++.+.+.+.+
T Consensus 81 ~~~~p~~lK~~ld~l~~~-----~~~gK~~~~~~tgg~~-~~~~a~~~~l~~~l~~~g~~~v~~~v~~ 142 (197)
T 2vzf_A 81 KASYTGLLKAFLDILPQF-----ALAGKAALPLATGGSP-AHVLALDYGLRPVLHSMGVRHVVQSFFL 142 (197)
T ss_dssp TTBCCHHHHHHHTTSCTT-----TTTTCEEEEEEEESSG-GGGGHHHHTHHHHHHTTTCSEECCCEEE
T ss_pred CCCCCHHHHHHHHhcccc-----ccCCCEEEEEEECCCc-chhhHHHHHHHHHHHHcCCEeccceEEE
Confidence 799999999999987432 3889999999997543 3333222468999999999987654443
No 70
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.31 E-value=8.4e-12 Score=117.09 Aligned_cols=125 Identities=16% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCC---CC-----------------------------CccCCC
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVD---DY-----------------------------DARCLP 52 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~---~~-----------------------------~~~~l~ 52 (628)
.|++++|+|.|.||||+++|+.|++.+.. .++.+. .+ ...++.
T Consensus 3 ~~~kilIvY~S~tG~T~~vA~~Ia~~l~~-----~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 77 (162)
T 3klb_A 3 NDRKILVAYFSCSGVTKAVAEKLAAITGA-----DLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPE 77 (162)
T ss_dssp GGSCEEEEECCSSSHHHHHHHHHHHHHTC-----EEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGG
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHHhCC-----CeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChh
Confidence 47899999999999999999999998853 232221 10 123566
Q ss_pred CCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeecce
Q 006874 53 EEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERG 131 (628)
Q Consensus 53 ~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~ 131 (628)
++|.|||++||| .|.+|+.+..|++.+ .++|+++++|++ |.+.+ ..+.+.+.+.|. |++.+ +..
T Consensus 78 ~yd~iilG~P~~-~g~~~~~~~~fl~~~--------~l~gk~v~~f~t~g~~~~---g~~~~~l~~~l~--~~~~~-~g~ 142 (162)
T 3klb_A 78 KYEVLFVGFPVW-WYIAPTIINTFLESY--------DFAGKIVVPFATSGGSGI---GNCEKNLHKAYP--DIVWK-DGK 142 (162)
T ss_dssp GCSEEEEEEECB-TTBCCHHHHHHHHTS--------CCTTCEEEEEEECSSCCS---HHHHHHHHHHCT--TSEEC-CCE
T ss_pred hCCEEEEEcccc-cCCCCHHHHHHHHhc--------CCCCCEEEEEEEeCCCCc---cHHHHHHHHHcC--CCEee-cce
Confidence 899999999999 799999999998764 278999999997 44444 456677777775 56643 545
Q ss_pred eeeCCCCCCchhhHHHHHHHH
Q 006874 132 LGDDQHPSGYEGALDPWMRSL 152 (628)
Q Consensus 132 ~~d~~~~~g~~~~~~~W~~~l 152 (628)
.+.... .+++++.|++++
T Consensus 143 ~~~g~~---~~~~v~~W~~~~ 160 (162)
T 3klb_A 143 LLNGQI---TRDLVTEWFEKI 160 (162)
T ss_dssp ECCSCC---CHHHHHHHHHHT
T ss_pred EEeCCC---CHHHHHHHHHHh
Confidence 555432 578899999864
No 71
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.18 E-value=7.9e-11 Score=109.04 Aligned_cols=122 Identities=19% Similarity=0.213 Sum_probs=86.0
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCC-CCcEE----eeC-------------------CC--CCccCCCCCCeEEE
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRG-CPVVV----RPV-------------------DD--YDARCLPEEDTVIF 59 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g-~~v~~----~~l-------------------~~--~~~~~l~~~~~vi~ 59 (628)
|++++|+|.|.||||+++|+.|++.+...+ +++++ ++. .+ ....++.++|.|||
T Consensus 3 ~~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~iil 82 (151)
T 3edo_A 3 AKKTLILYYSWSGETKKMAEKINSEIKDSELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDLILI 82 (151)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHSTTCEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSEEEE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHhccCCCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCEEEE
Confidence 468999999999999999999999885443 22222 110 00 12345668999999
Q ss_pred EEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCC
Q 006874 60 VVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPS 139 (628)
Q Consensus 60 ~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~ 139 (628)
++||| .|.+|+.+..|++.+. .+.++.+++|++|.... ..+.+.+.+.+. +++.+ +...++
T Consensus 83 G~P~~-~g~~~~~~~~fl~~~~-------~~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~-~g~~~~----- 143 (151)
T 3edo_A 83 GSPVW-SGYPATPIKTLLDQMK-------NYRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVI-GVARDD----- 143 (151)
T ss_dssp EEEEE-TTEECTHHHHHHHHTT-------TCCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEE-EEEETT-----
T ss_pred Eccee-cccccHHHHHHHHhch-------hcCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeee-cccccH-----
Confidence 99999 6999999999999863 16789999999886654 345667777764 44433 333332
Q ss_pred CchhhHHHHH
Q 006874 140 GYEGALDPWM 149 (628)
Q Consensus 140 g~~~~~~~W~ 149 (628)
.++..|+
T Consensus 144 ---~~~~~w~ 150 (151)
T 3edo_A 144 ---SEVDKWS 150 (151)
T ss_dssp ---TTHHHHH
T ss_pred ---HHHHHHh
Confidence 2588886
No 72
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.07 E-value=4.8e-10 Score=108.30 Aligned_cols=148 Identities=13% Similarity=0.108 Sum_probs=110.4
Q ss_pred CCcEEEEEECCc---chHHHHHHHHHHHHHhCC--CCcEEeeCCCCCc--------------------------------
Q 006874 6 RNKLLILYASQT---GNALDAAERIGRESERRG--CPVVVRPVDDYDA-------------------------------- 48 (628)
Q Consensus 6 ~~~v~I~Y~S~t---Gnte~~A~~l~~~l~~~g--~~v~~~~l~~~~~-------------------------------- 48 (628)
||+|+|+|+|.. |||+++|+.+.+.+.+.| .+++++++.+.+.
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDEL 80 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 578999999998 999999999999999876 7899999977532
Q ss_pred -cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcChhH--HHHHHHHHHH
Q 006874 49 -RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQK--FNFVAKKLDN 117 (628)
Q Consensus 49 -~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y~~--f~~a~~~l~~ 117 (628)
+++.++|.|||++|+| .+.+|..++.|++++..... +...++|+++++|+.+...|.. |+.+...+..
T Consensus 81 ~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~ 159 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMY-NFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKV 159 (201)
T ss_dssp HHHHHHCSEEEEECCCB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHH
T ss_pred HHHHHhCCEEEEEeCcc-cCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHH
Confidence 2344789999999999 89999999999999863211 1234889999999986665643 5557788889
Q ss_pred HHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006874 118 RLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 118 ~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
.|..+|++.+.. ..+..... .++..++|.++..+.+.
T Consensus 160 ~l~~~G~~~~~~-~~~~~~~~--~~~~~~~~l~~a~~~~~ 196 (201)
T 1t5b_A 160 FLGFIGITDVNF-VFAEGIAY--GPEVAAKAQADAKAAID 196 (201)
T ss_dssp HHHHTTCCCEEE-EEECCGGG--CHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcceeEE-EEEecccC--ChHHHHHHHHHHHHHHH
Confidence 999999997743 33322211 23344677776655553
No 73
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.03 E-value=2.5e-10 Score=108.14 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=88.3
Q ss_pred CcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-------------------CCCCCCeEEEEEecCC
Q 006874 7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR-------------------CLPEEDTVIFVVSTTG 65 (628)
Q Consensus 7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-------------------~l~~~~~vi~~~sT~g 65 (628)
|+|+|+|||.. |||+++|+.+++.+.. +++++.+++.. ++.++|.+||++|+|
T Consensus 1 Mkilii~gS~~~~g~t~~la~~i~~~l~~-----~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP~y- 74 (174)
T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHT-----DLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPEY- 74 (174)
T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTC-----EEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEECS-
T ss_pred CEEEEEECCCCCCCcHHHHHHHHHHhCcc-----eEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcCCc-
Confidence 57999999998 9999999999998763 56666554331 344789999999999
Q ss_pred CCCCChhHHHHHHHHHhccCcccccCCcEEEEEec-CCcChhHHHHHHHHHHHHHHhcCCeEeecceee
Q 006874 66 QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGL-GDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG 133 (628)
Q Consensus 66 ~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGl-Gds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~ 133 (628)
+|.+|..++.|++++... .++|+.+++|+. |.. ..+..+...+...|..+|+..+.+.+.+
T Consensus 75 ~~~~p~~lk~~lD~l~~~-----~~~gK~~~~~~~sgg~--~g~~~a~~~l~~~l~~~g~~~v~~~v~i 136 (174)
T 3gfs_A 75 HSGMSGALKNALDFLSSE-----QFKYKPVALLAVAGGG--DGGINALNNMRTVMRGVYANVIPKQLVL 136 (174)
T ss_dssp SSSCCHHHHHHHHTCCHH-----HHTTCEEEEEEECCST--TCSHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHhCHh-----hhCCCcEEEEEECCCC--hhHHHHHHHHHHHHHHcCCEEecceEEe
Confidence 999999999999987542 388999999984 322 1245678899999999999977554444
No 74
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.01 E-value=1e-09 Score=109.70 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=112.6
Q ss_pred CCcEEEEEECCc--chHHHHHHHHHHHHHhC-CCCcEEeeCCCCCc---------------------c-------CCCCC
Q 006874 6 RNKLLILYASQT--GNALDAAERIGRESERR-GCPVVVRPVDDYDA---------------------R-------CLPEE 54 (628)
Q Consensus 6 ~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~-g~~v~~~~l~~~~~---------------------~-------~l~~~ 54 (628)
||+|+|+|||.. |||+++|+.+.+.+.+. |.+++++++.+.++ . ++.++
T Consensus 1 MmkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~A 80 (242)
T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLES 80 (242)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHC
Confidence 578999999986 99999999999999987 99999999887532 1 13478
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeee
Q 006874 55 DTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD 134 (628)
Q Consensus 55 ~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d 134 (628)
|.|||++|+| .|.+|..++.|++++.... ....+.|+++++|+.+... ....+.+.+...|..+|++.+.+....+
T Consensus 81 D~iI~~sP~y-~~~~p~~lK~~iDr~~~~~-~~~~l~gK~~~~i~t~g~~--g~~~~~~~l~~~l~~~G~~~v~~~~~~~ 156 (242)
T 1sqs_A 81 DIIIISSPVY-LQNVSVDTKNFIERIGGWS-HLFRLAGKFVVTLDVAESN--GSDNVSEYLRDIFSYMGGQILHQVSITN 156 (242)
T ss_dssp SEEEEEEEEC-SSSCCHHHHHHHHHTGGGT-TTTTTTTCEEEEEEEESSC--CSCCHHHHHHHHHHHTTCEEEEEEEEEG
T ss_pred CEEEEEcccc-ccCCCHHHHHHHHHHHHhc-cccccCCCEEEEEEeCCCC--chhhHHHHHHHHHHHCCCeeeeEEEEec
Confidence 9999999999 9999999999999984321 1124889999999864321 1224567889999999999876543333
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHh
Q 006874 135 DQHPSGYEGALDPWMRSLWRRLHQ 158 (628)
Q Consensus 135 ~~~~~g~~~~~~~W~~~l~~~l~~ 158 (628)
..++ ...+.++++.+++.+.+..
T Consensus 157 ~~~~-~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 157 SLKD-IAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp GGGG-GHHHHHHHHHHHHHHHHTT
T ss_pred cCCh-HHHHHHHHHHHHHHHHHhc
Confidence 2122 3667888899988888854
No 75
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.00 E-value=9.6e-10 Score=105.82 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=95.2
Q ss_pred CCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCc------------------cCCCCCCeEEEEEecC
Q 006874 5 KRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA------------------RCLPEEDTVIFVVSTT 64 (628)
Q Consensus 5 ~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~------------------~~l~~~~~vi~~~sT~ 64 (628)
.+|+|+|+|||.. |||+++|+.+++.+. .|.+++++++.+++. +++.++|.|||++|+|
T Consensus 5 ~~Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y 83 (193)
T 1rtt_A 5 DDIKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEY 83 (193)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEE
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccc
Confidence 4578999999985 999999999999988 788899999887432 2345789999999999
Q ss_pred CCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006874 65 GQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 65 g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
.|.+|..++.|++++..... ..++|+++++|+.+...++ ...+...+...|..+|++.+.
T Consensus 84 -~~~~p~~lK~~iD~~~~~~~--~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~~ 143 (193)
T 1rtt_A 84 -NYSMAGVLKNAIDWASRPPE--QPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPLN 143 (193)
T ss_dssp -TTEECHHHHHHHHHHTCSSS--CTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEECC
T ss_pred -ccCcCHHHHHHHHHhccccC--cccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEcC
Confidence 88999999999999864311 2488999999998644333 235678899999999998876
No 76
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=98.94 E-value=7.7e-09 Score=103.42 Aligned_cols=123 Identities=19% Similarity=0.124 Sum_probs=98.0
Q ss_pred cCCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc---------------CCCCCCeEEEEEecCCC
Q 006874 4 EKRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR---------------CLPEEDTVIFVVSTTGQ 66 (628)
Q Consensus 4 ~~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~---------------~l~~~~~vi~~~sT~g~ 66 (628)
..||+|+|+|||.. |+|+.+|+.+.+.+.+.|++++++++.+++.. .+.+.|.|||++|+| +
T Consensus 32 ~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Y-n 110 (247)
T 2q62_A 32 THRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPER-H 110 (247)
T ss_dssp CSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECS-S
T ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCC-C
Confidence 35789999999985 99999999999999999999999999887521 233789999999999 9
Q ss_pred CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006874 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
|.+|..++.|++++.........++|+.+++++.+-.. +.. .+...+...|..+|+..+.+
T Consensus 111 ~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v~~ 171 (247)
T 2q62_A 111 GAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITIPN 171 (247)
T ss_dssp SSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECSC
T ss_pred CCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEeCC
Confidence 99999999999998543211234899999999985322 211 45678889999999987643
No 77
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=98.92 E-value=2.8e-09 Score=102.26 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=92.0
Q ss_pred CcEEEEEECCc--chHHHHHHHHHHHHHhC------CCCcEEeeCCCCCc-----------------------------c
Q 006874 7 NKLLILYASQT--GNALDAAERIGRESERR------GCPVVVRPVDDYDA-----------------------------R 49 (628)
Q Consensus 7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~------g~~v~~~~l~~~~~-----------------------------~ 49 (628)
|+|+|+|||.. |||+++|+.+.+.+.+. |.+++++++.+.+. +
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR 80 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHH
Confidence 57999999998 99999999999999876 68888888765221 1
Q ss_pred CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006874 50 CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 50 ~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
++.++|.|||++|+| .|.+|..++.|++++.. .++|+++++|+.|... . ..+...+...|..+|++.+.
T Consensus 81 ~l~~aD~iI~~sP~y-~~~~p~~lK~~iD~~~~------~l~gK~~~~~~~G~~~-~--~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 81 IVNALDIIVFVTPQY-NWGYPAALKNAIDRLYH------EWHGKPALVVSYGGHG-G--SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHTCSEEEEEEECB-TTBCCHHHHHHHHTCST------TTTTCEEEEEEEETTT-T--HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCEEEEEeceE-CCCCCHHHHHHHHHHHh------hcCCCEEEEEEeCCcc-h--hhHHHHHHHHHHHCCCEEcc
Confidence 244889999999999 89999999999998743 2789999999887643 2 35678899999999998775
No 78
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=98.78 E-value=3.1e-08 Score=100.33 Aligned_cols=121 Identities=16% Similarity=0.086 Sum_probs=97.0
Q ss_pred CCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc----------------CCCCCCeEEEEEecCCC
Q 006874 5 KRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDAR----------------CLPEEDTVIFVVSTTGQ 66 (628)
Q Consensus 5 ~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~----------------~l~~~~~vi~~~sT~g~ 66 (628)
.+|+|+|+|||.. |+|+.+|+.+++.+.+.|.+++++++.+.+.. .+...|.+||++|+| +
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Y-n 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPER-H 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEE-T
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCcc-c
Confidence 4789999999986 99999999999999999999999999886521 223689999999999 9
Q ss_pred CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006874 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
|.+|..++.|++|+.........++|+.+++++.+... +.. .+...+...|..+|+..+.
T Consensus 136 ~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv~ 195 (279)
T 2fzv_A 136 GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTIP 195 (279)
T ss_dssp TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECS
T ss_pred cCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEeC
Confidence 99999999999998543211234899999999985332 222 3567888899999998763
No 79
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=98.77 E-value=4.9e-08 Score=94.87 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=104.9
Q ss_pred CCcEEEEEECCc----chHHHHHHHHHHHHHhCC--CCcEEeeCC--CCCcc----------------------------
Q 006874 6 RNKLLILYASQT----GNALDAAERIGRESERRG--CPVVVRPVD--DYDAR---------------------------- 49 (628)
Q Consensus 6 ~~~v~I~Y~S~t----Gnte~~A~~l~~~l~~~g--~~v~~~~l~--~~~~~---------------------------- 49 (628)
||+|+|+|||.. |+|.++|+.+.+.+++.| .+++++++. +....
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQ 80 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHH
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHh
Confidence 578999999987 999999999999999887 889999998 64321
Q ss_pred ----------CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcChhHHHHH
Q 006874 50 ----------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQKFNFV 111 (628)
Q Consensus 50 ----------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y~~f~~a 111 (628)
++.++|.|||++|+| .+.+|..++.|++++..... +...++|++++++......|.+-..+
T Consensus 81 ~~~~~~~~~~~l~~aD~iv~~~P~y-~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~ 159 (208)
T 2hpv_A 81 KVARFNELTDQFLSADKVVIANPMW-NLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFA 159 (208)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHH
T ss_pred hHHHHHHHHHHHHhCCEEEEEeccc-cCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchH
Confidence 244789999999999 99999999999999864211 12347899999987633344421234
Q ss_pred HHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006874 112 AKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 112 ~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
...+...|.-+|++.+.. ..+..... ..+..++|.++..+..
T Consensus 160 ~~~l~~~~~~~G~~~~~~-~~~~~~~~--~~~~~~~~l~~a~~~~ 201 (208)
T 2hpv_A 160 SQYIKAILNFIGVDQVDG-LFIEGIDH--FPDRAEELLNTAMTKA 201 (208)
T ss_dssp HHHHHHHHHHTTCCEEEE-EEEECTTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeE-EEEccccC--CHHHHHHHHHHHHHHH
Confidence 567777888999987754 33332221 2245666666554443
No 80
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=98.74 E-value=5.1e-08 Score=93.76 Aligned_cols=124 Identities=12% Similarity=0.021 Sum_probs=96.2
Q ss_pred CCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-----------------cCCCCCCeEEEEEecCCC
Q 006874 6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDA-----------------RCLPEEDTVIFVVSTTGQ 66 (628)
Q Consensus 6 ~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-----------------~~l~~~~~vi~~~sT~g~ 66 (628)
|++|+|++||. .|+|.++|+.+.+.+. .|.+++++++.+.+. +.+.++|.+||++|+| +
T Consensus 2 M~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y-~ 79 (192)
T 3fvw_A 2 SKRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVY-N 79 (192)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCB-T
T ss_pred CCEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECccc-c
Confidence 67999999998 7999999999999997 688899999877542 1234789999999999 9
Q ss_pred CCCChhHHHHHHHHHhccC-----cccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceee
Q 006874 67 GDTPDSMKVFWRFLLQKSL-----SKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLG 133 (628)
Q Consensus 67 G~~p~~~~~F~~~L~~~~~-----~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~ 133 (628)
+.+|..++.|++++..... ....++|+++++++.+... .+..+...+...|..+|++.+.....+
T Consensus 80 ~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~--g~~~~~~~l~~~l~~~G~~~v~~~v~~ 149 (192)
T 3fvw_A 80 YAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA--SPEEVFEDYRSLLPFIRMHLVDQLTGV 149 (192)
T ss_dssp TBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEE
T ss_pred cCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc--chhHHHHHHHHHHHHcCCeeecceeec
Confidence 9999999999999975321 1125899999999886542 123345788889999999987554443
No 81
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=98.17 E-value=1.5e-09 Score=105.15 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=98.3
Q ss_pred CCccCCCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEe-eCCCCC------------------ccCCCCCCeEEE
Q 006874 1 MREEKRNKLLILYASQT--GNALDAAERIGRESERRGCPVVVR-PVDDYD------------------ARCLPEEDTVIF 59 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~-~l~~~~------------------~~~l~~~~~vi~ 59 (628)
|+...+|+|+|+|||.. |+|+++|+.+.+.+.+ |.+++++ ++.+++ .+.+.+.|.|||
T Consensus 1 ~~~~~~mkIliI~gS~r~~s~t~~la~~~~~~~~~-g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi 79 (199)
T 3s2y_A 1 MTTTSPLHFVTLLGSLRKASFNAAVARALPEIAPE-GIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI 79 (199)
Confidence 66666789999999986 8999999999999987 8888888 886621 124558899999
Q ss_pred EEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006874 60 VVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 60 ~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
++|+| ++.+|..++.|++++.....+ .+.|+++++++.+...++ ...+...+...|..+|+..+..
T Consensus 80 ~tP~Y-~~s~p~~lK~~iD~l~~~~~~--~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~~l~~lg~~~v~~ 145 (199)
T 3s2y_A 80 VTPEY-NYSVPGVLKNAIDWLSRVSPQ--PLAGKPVALVTASPGMIG-GARAQYHLRQSLVFLDAYVLNR 145 (199)
Confidence 99999 899999999999998653211 488999999996433333 3346688888899999987754
No 82
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=98.70 E-value=7.7e-08 Score=93.07 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=94.6
Q ss_pred CCccCCCcEEEEEEC--CcchHHHHHHHHHHHHHhCCCCcE-EeeCCCCCcc------------------CCCCCCeEEE
Q 006874 1 MREEKRNKLLILYAS--QTGNALDAAERIGRESERRGCPVV-VRPVDDYDAR------------------CLPEEDTVIF 59 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S--~tGnte~~A~~l~~~l~~~g~~v~-~~~l~~~~~~------------------~l~~~~~vi~ 59 (628)
|..+.+|+|++++|| ..|+|+.+|+.+.+.+. .|.+++ ++++.+++.- .+.+.|.+||
T Consensus 1 m~~M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~-~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi 79 (199)
T 4hs4_A 1 MTTTSPLHFVTLLGSLRKASFNAAVARALPEIAP-EGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI 79 (199)
T ss_dssp ----CCEEEEEEECCCSTTCHHHHHHHHHHHHCC-TTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEE
T ss_pred CCCCCCCEEEEEEcCCCCCChHHHHHHHHHHHcc-CCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEE
Confidence 444456799999999 67999999999999885 577888 8887654320 1347899999
Q ss_pred EEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006874 60 VVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 60 ~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
++|+| ++.+|.-++.|++|+... ....+.||++++++.+...++.. .+...+...|..+|+..+.
T Consensus 80 ~tP~Y-~~s~p~~LK~~iD~~~~~--~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~ 144 (199)
T 4hs4_A 80 VTPEY-NYSVPGVLKNAIDWLSRV--SPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLN 144 (199)
T ss_dssp EECCB-TTBCCHHHHHHHHHHTTS--SSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECC
T ss_pred EcCcc-CCCcCHHHHHHHHHhccc--CCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcC
Confidence 99999 999999999999999662 22458999999999864444422 3567889999999998774
No 83
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=98.65 E-value=5.3e-08 Score=92.44 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=84.6
Q ss_pred CCCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc------------------------cCCCCCCeEE
Q 006874 5 KRNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDA------------------------RCLPEEDTVI 58 (628)
Q Consensus 5 ~~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~------------------------~~l~~~~~vi 58 (628)
+||+|+|+|+|. +|||+++|+.+++.+ .++.+++.+.+. +++.++|.||
T Consensus 2 ~mMkilii~~S~r~~g~t~~la~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii 76 (184)
T 1rli_A 2 NAMKIAVINGGTRSGGNTDVLAEKAVQGF-----DAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILI 76 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT-----CCEEEEC-----------------------CHHHHHHHHHTCSEEE
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHcCC-----eEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEE
Confidence 467999999995 499999999998754 466666655322 1345899999
Q ss_pred EEEecCCCCCCChhHHHHHHHHHhccCc------ccccCCcEEEEEecCCcChh-HHHHHHHHHHHHHHhcCCeEeec
Q 006874 59 FVVSTTGQGDTPDSMKVFWRFLLQKSLS------KQWLEGVRYAVFGLGDSGYQ-KFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 59 ~~~sT~g~G~~p~~~~~F~~~L~~~~~~------~~~l~~~~~aVfGlGds~y~-~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
|++|+| .|.+|..++.|++++...... ...++|+++++|+.+..... .+..+.+.+...|..+|++.+..
T Consensus 77 ~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 77 FATPIY-WFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEECB-TTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEeCcc-ccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence 999999 899999999999987542111 12378999999988644211 23446788888999999987753
No 84
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=98.56 E-value=8e-07 Score=86.82 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=112.4
Q ss_pred cCCCcEEEEEECC------cchHHHHHHHHHHHHHhCCCCcEEeeCCC-CCc----cCCCCCCeEEEEEecCCCCCCChh
Q 006874 4 EKRNKLLILYASQ------TGNALDAAERIGRESERRGCPVVVRPVDD-YDA----RCLPEEDTVIFVVSTTGQGDTPDS 72 (628)
Q Consensus 4 ~~~~~v~I~Y~S~------tGnte~~A~~l~~~l~~~g~~v~~~~l~~-~~~----~~l~~~~~vi~~~sT~g~G~~p~~ 72 (628)
..||+|+|++||. .+++..+|+.+.+.+++.|.++++.++++ ++. +.+...|.|||++|.| .+.+|.-
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~~P~y-~~~~p~~ 101 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAW-WMGEPWI 101 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEEEECB-TTBCCHH
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEECChH-hccCCHH
Confidence 3688999999997 37899999999999999999999999975 222 2345899999999999 9999999
Q ss_pred HHHHHHHHHhccC-------------------cccccCCcEEEEEecCCcChhHH-------HH-----HHHHHHHHHHh
Q 006874 73 MKVFWRFLLQKSL-------------------SKQWLEGVRYAVFGLGDSGYQKF-------NF-----VAKKLDNRLLD 121 (628)
Q Consensus 73 ~~~F~~~L~~~~~-------------------~~~~l~~~~~aVfGlGds~y~~f-------~~-----a~~~l~~~L~~ 121 (628)
++.|++++..... +...|+|+++.|+-........| +. ...-+...|.-
T Consensus 102 lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~~~~~l~p~~~~l~f 181 (218)
T 3rpe_A 102 LKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQF 181 (218)
T ss_dssp HHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCCHHHHHHHHHHHHHh
Confidence 9999998754321 12357899988876644432222 21 22335667778
Q ss_pred cCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006874 122 LGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP 161 (628)
Q Consensus 122 lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~ 161 (628)
+|++.+-+....+... ++++++|++++.+.|.+.++
T Consensus 182 ~G~~~l~~~~~~g~~~----~~~~~~~~~~~~~~L~~~~~ 217 (218)
T 3rpe_A 182 LGMKPLPTFMCNDVIK----QPDIEGDIARYRQHLAENVN 217 (218)
T ss_dssp TTCEECCCEEECSTTT----SCCHHHHHHHHHHHHHHHTC
T ss_pred CCCEEeceEEEeCCCC----hHHHHHHHHHHHHHHHHhcc
Confidence 9999886554444432 34889999998888876654
No 85
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=98.51 E-value=6e-07 Score=87.48 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=105.2
Q ss_pred CCcEEEEEECCcc---hHHHHHHHHHHHHHhC--CCCcEEeeCCCCCc--------------------------------
Q 006874 6 RNKLLILYASQTG---NALDAAERIGRESERR--GCPVVVRPVDDYDA-------------------------------- 48 (628)
Q Consensus 6 ~~~v~I~Y~S~tG---nte~~A~~l~~~l~~~--g~~v~~~~l~~~~~-------------------------------- 48 (628)
||+|+|+|||..+ +|.++|+.+.+.+++. |.+++++++.+.+.
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQ 80 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHH
Confidence 6899999999765 6999999999999987 89999999865421
Q ss_pred --cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc---------Cc---ccccCCcEEEEEec-CC-cChh-----H
Q 006874 49 --RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS---------LS---KQWLEGVRYAVFGL-GD-SGYQ-----K 107 (628)
Q Consensus 49 --~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~---------~~---~~~l~~~~~aVfGl-Gd-s~y~-----~ 107 (628)
+++...|.|||++|+| .+.+|..++.|++++.... -+ ...++|+++.++.. |. ..|+ .
T Consensus 81 ~~~~l~~AD~iV~~~P~y-~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~ 159 (212)
T 3r6w_A 81 LVGELFDSDLLVISTPMY-NFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQA 159 (212)
T ss_dssp HHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGG
T ss_pred HHHHHHhCCEEEEEcCcc-cccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCc
Confidence 1134689999999999 9999999999999985321 11 33588999888876 42 2332 1
Q ss_pred HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006874 108 FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 108 f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
+......+...|.-+|++.+.. ..+..... ..+..++|.++..+.+.
T Consensus 160 ~~~~~~~l~~~l~~~G~~~~~~-v~~~g~~~--~~~~~~~~l~~a~~~~~ 206 (212)
T 3r6w_A 160 MNHADPWLRTALGFIGIDEVTV-VAAEGEES--GGRSFEDSCDEAEQRLL 206 (212)
T ss_dssp GCCSHHHHHHHHHHHTCCEEEE-EEECCTTT--CHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHCCCceeEE-EEEecccC--CHHHHHHHHHHHHHHHH
Confidence 2334567788888899988743 33333221 34556667666555443
No 86
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=98.48 E-value=4.3e-07 Score=87.14 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=94.2
Q ss_pred CCCcEEEEEECCc--chHHHHHHHHHH----HHHhC--CCCcEEeeCCCCCcc-------------------CCCCCCeE
Q 006874 5 KRNKLLILYASQT--GNALDAAERIGR----ESERR--GCPVVVRPVDDYDAR-------------------CLPEEDTV 57 (628)
Q Consensus 5 ~~~~v~I~Y~S~t--Gnte~~A~~l~~----~l~~~--g~~v~~~~l~~~~~~-------------------~l~~~~~v 57 (628)
-|++|+++.||.. |+|..+|+.+.+ .+++. |.+++++++.+.++. ++.+.|.+
T Consensus 10 ~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~i 89 (191)
T 3k1y_A 10 HMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGL 89 (191)
T ss_dssp CSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEE
T ss_pred hhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEE
Confidence 5889999999974 899999999999 66666 778899998765421 12278999
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeecceeee
Q 006874 58 IFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVERGLGD 134 (628)
Q Consensus 58 i~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d 134 (628)
||++|+| ++.+|..++.|++++.. ..+.|+++++++.|.. +.........+...|..+|+..+.+.+.+.
T Consensus 90 vi~sP~Y-~~~~~~~lK~~iD~~~~-----~~l~gK~~~~v~t~G~-~~~~~~~~~~L~~il~~lg~~vv~~~v~~~ 159 (191)
T 3k1y_A 90 VVATPVF-KASYTGLFKMFFDILDT-----DALTGMPTIIAATAGS-ARHSLVLDYALRPLLSYMRAVVVPTGVFAA 159 (191)
T ss_dssp EEEEECB-TTBSCHHHHHHHHHSCT-----TTTTTCEEEEEEEESS-STTTTHHHHTHHHHHHHTTCEECSCCEEEE
T ss_pred EEEcCcc-CCcCcHHHHHHHHHhhh-----hhcCCCEEEEEEeCCC-cchhhHHHHHHHHHHHHCCCEEcCcEEEec
Confidence 9999999 99999999999999854 2489999999998743 222222223488889999999875544443
No 87
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=98.39 E-value=1.1e-06 Score=84.52 Aligned_cols=150 Identities=12% Similarity=0.074 Sum_probs=107.7
Q ss_pred CcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-------------------------CCCCCCeEEE
Q 006874 7 NKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR-------------------------CLPEEDTVIF 59 (628)
Q Consensus 7 ~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-------------------------~l~~~~~vi~ 59 (628)
|+|+|++||- .++|..+|+.+.+.+ +.|.+++++++.+.... ++.+.|.|||
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~ 79 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIF 79 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEE
Confidence 5799999996 457899999999999 78999999999765321 1236899999
Q ss_pred EEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcC--hhH--HHHHHHHHHHHHHhcCCeEe
Q 006874 60 VVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSG--YQK--FNFVAKKLDNRLLDLGATAV 127 (628)
Q Consensus 60 ~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~--y~~--f~~a~~~l~~~L~~lGa~~v 127 (628)
++|.| .+.+|..++.|++++..... +...++|+++.++..+... |.. +......+...|.-+|++.+
T Consensus 80 ~~P~y-~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~~ 158 (196)
T 3lcm_A 80 IFPIW-WSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISPV 158 (196)
T ss_dssp EEECB-TTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCCE
T ss_pred ECchh-hccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCcee
Confidence 99999 99999999999999854211 1235899999998886655 421 11112456666777899876
Q ss_pred ecceeeeCCCCCCchhhHHHHHHHHHHHHHhhC
Q 006874 128 VERGLGDDQHPSGYEGALDPWMRSLWRRLHQID 160 (628)
Q Consensus 128 ~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~ 160 (628)
.......... ..++...+|++++.+...+.+
T Consensus 159 ~~~~~~g~~~--~~~~~~~~~l~~~~~~~~~~~ 189 (196)
T 3lcm_A 159 KLTELTSIEK--ISDDERQKLLHKVAQITRNIL 189 (196)
T ss_dssp EEEEECSTTT--SCHHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEeCcCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 5443333321 246778899998887776544
No 88
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=98.38 E-value=1.6e-06 Score=87.92 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=103.5
Q ss_pred CCcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-----------------------------------
Q 006874 6 RNKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA----------------------------------- 48 (628)
Q Consensus 6 ~~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----------------------------------- 48 (628)
||+|+|+|||.. |+|..+|+.+.+.+++.|.+|+++++.+...
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLS 81 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBC
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCc
Confidence 679999999986 6999999999999999999999999976542
Q ss_pred cC-------CCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcC---hhH--H
Q 006874 49 RC-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSG---YQK--F 108 (628)
Q Consensus 49 ~~-------l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~---y~~--f 108 (628)
.+ |..+|.|||++|.| .+.+|..++.|++++..... +...++|+++.++...... |.+ .
T Consensus 82 dd~~~~~~~l~~AD~IV~~~P~y-~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~~~~y~~~g~ 160 (273)
T 1d4a_A 82 PDIVAEQKKLEAADLVIFQFPLQ-WFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGI 160 (273)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSCTGGGSTTBT
T ss_pred HHHHHHHHHHHhCCEEEEECchh-hccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCChHHhccccc
Confidence 01 34678999999999 99999999999999854321 1245889999888764333 421 1
Q ss_pred ----HHHHHHHH-HHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhh
Q 006874 109 ----NFVAKKLD-NRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQI 159 (628)
Q Consensus 109 ----~~a~~~l~-~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (628)
......+. ..|.-+|++.+.+....... .. .++..+.|.++..+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~l~~l 214 (273)
T 1d4a_A 161 HGDMNVILWPIQSGILHFCGFQVLEPQLTYSIG-HT-PADARIQILEGWKKRLENI 214 (273)
T ss_dssp TCCHHHHHHHHHTTTTGGGTCEECCCEEETTGG-GS-CHHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHHhCCCeeeeEEEEeccc-cC-CHHHHHHHHHHHHHHHHHH
Confidence 11222222 34566898876443332221 11 2345666777766666543
No 89
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=98.35 E-value=1.1e-06 Score=84.40 Aligned_cols=154 Identities=11% Similarity=0.049 Sum_probs=105.5
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc----------cCCCCCCeEEEEEecCCCCCCChhHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----------RCLPEEDTVIFVVSTTGQGDTPDSMKV 75 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----------~~l~~~~~vi~~~sT~g~G~~p~~~~~ 75 (628)
||+|+|++||..++...+++.+.+.+++.|.+++++++.+..+ +.+...|.|||++|.| .+.+|.-++.
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y-~~~~pa~lK~ 79 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIY-WFNCPPLLKQ 79 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECB-TTBCCHHHHH
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChh-hcCCCHHHHH
Confidence 6889999999998866899999999998898899998864322 2345899999999999 9999999999
Q ss_pred HHHHHHhccC----cccccCCcEEEEEecCCcC---hh-------HHHHHHHHHHHHHHhcCCeEeecceeeeCCCC---
Q 006874 76 FWRFLLQKSL----SKQWLEGVRYAVFGLGDSG---YQ-------KFNFVAKKLDNRLLDLGATAVVERGLGDDQHP--- 138 (628)
Q Consensus 76 F~~~L~~~~~----~~~~l~~~~~aVfGlGds~---y~-------~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~--- 138 (628)
|++++..... ....|+|+++.++...... |. .......-+...|.-+|++.+-+....+....
T Consensus 80 ~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~~~~~g~~~~~~~ 159 (192)
T 3f2v_A 80 WLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPPFTFHTIDSNAGY 159 (192)
T ss_dssp HHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCCEEEEC-------
T ss_pred HHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeeeEEEecccccccc
Confidence 9999754321 1235899999988774443 32 12233344677788899997755444333210
Q ss_pred -CCchhhHHHHHHHHHHHHHhhC
Q 006874 139 -SGYEGALDPWMRSLWRRLHQID 160 (628)
Q Consensus 139 -~g~~~~~~~W~~~l~~~l~~~~ 160 (628)
.-.+++++..+++..+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~y~~~l~~~~ 182 (192)
T 3f2v_A 160 SEAARQEVERSARDYLAWLDALQ 182 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 0024556666666556565443
No 90
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=98.34 E-value=1.6e-06 Score=83.26 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=102.7
Q ss_pred CCCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcE-EeeCCCCCc-------------------cCCCCCCeEEEEEe
Q 006874 5 KRNKLLILYASQ--TGNALDAAERIGRESERRGCPVV-VRPVDDYDA-------------------RCLPEEDTVIFVVS 62 (628)
Q Consensus 5 ~~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~-~~~l~~~~~-------------------~~l~~~~~vi~~~s 62 (628)
.+|+|++++||. .++|..+|+.+.+.+ +.|++++ ++++.+.+. +.+.+.|.+||++|
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~~~-~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP 81 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPKIA-PASMEVNALPSIADIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTP 81 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGGTS-CTTEEEEECCCSTTCCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEEC
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHHHc-cCCCEEEEEEeHHHCCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEec
Confidence 458899999995 689999999887644 5678888 888876532 11237899999999
Q ss_pred cCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee-cce-------eee
Q 006874 63 TTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV-ERG-------LGD 134 (628)
Q Consensus 63 T~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~-~~~-------~~d 134 (628)
+| ++.+|..++.|++|+.... ...+.|+++++++..-..++. ..+...+...|..+|+..+- |.. ..|
T Consensus 82 ~y-~~~~~~~lK~~iD~~~~~~--~~~~~gK~~~~~~~s~g~~gg-~~a~~~Lr~~l~~lg~~v~~~~~~~~~~~~~~f~ 157 (193)
T 3svl_A 82 EY-NYSVPGGLKNAIDWLSRLP--DQPLAGKPVLIQTSSMGVIGG-ARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVD 157 (193)
T ss_dssp CB-TTBCCHHHHHHHHHHHTST--TCTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHTTCEECCSSCEEETTGGGGEE
T ss_pred cc-CCCCCHHHHHHHHHHhhcC--ccccCCCeEEEEEeCCCCcch-HHHHHHHHHHHHHCCCEEcCCCeEeecchhhhcC
Confidence 99 9999999999999997632 234899999999862222222 14567888999999998763 212 223
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhh
Q 006874 135 DQHPSGYEGALDPWMRSLWRRLHQI 159 (628)
Q Consensus 135 ~~~~~g~~~~~~~W~~~l~~~l~~~ 159 (628)
+++.+-.+++..+..+.+.+.+...
T Consensus 158 ~~~g~l~d~~~~~~l~~~~~~~~~~ 182 (193)
T 3svl_A 158 PQTGEVIDQGTLDHLTGQLTAFGEF 182 (193)
T ss_dssp TTTTEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 2200102345555666666665543
No 91
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=98.32 E-value=8.2e-06 Score=79.01 Aligned_cols=145 Identities=14% Similarity=0.075 Sum_probs=100.4
Q ss_pred CCcEEEEEECCc------chHHHHHHHHHHHHHhCCCCcEEeeCCCC-Cc----cCCCCCCeEEEEEecCCCCCCChhHH
Q 006874 6 RNKLLILYASQT------GNALDAAERIGRESERRGCPVVVRPVDDY-DA----RCLPEEDTVIFVVSTTGQGDTPDSMK 74 (628)
Q Consensus 6 ~~~v~I~Y~S~t------Gnte~~A~~l~~~l~~~g~~v~~~~l~~~-~~----~~l~~~~~vi~~~sT~g~G~~p~~~~ 74 (628)
..+|+|+.||-- ++|..+|+.+.+.+++.|.+++++++.+- +. +.+...|.|||++|.| .+.+|.-++
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y-~~s~pa~LK 90 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGW-WMGAPWTVK 90 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECB-TTBCCHHHH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEECCcc-ccCCCHHHH
Confidence 468999999988 99999999999999988999999999752 21 2345889999999999 999999999
Q ss_pred HHHHHHHhcc-------------------CcccccCCcEEEEEecCCcChhHH------------HHHHHHHHHHHHhcC
Q 006874 75 VFWRFLLQKS-------------------LSKQWLEGVRYAVFGLGDSGYQKF------------NFVAKKLDNRLLDLG 123 (628)
Q Consensus 75 ~F~~~L~~~~-------------------~~~~~l~~~~~aVfGlGds~y~~f------------~~a~~~l~~~L~~lG 123 (628)
.|++++.... -+...++|++++++.........| ..+...+...|.-+|
T Consensus 91 ~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~~~~l~~l~~~l~~~G 170 (204)
T 2amj_A 91 KYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLG 170 (204)
T ss_dssp HHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCHHHHTHHHHHHHHHTT
T ss_pred HHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCHHHHHHHHHHHHHHcC
Confidence 9999764321 022458899999988754432222 122234677888899
Q ss_pred CeEeecceeeeCCCCCCchhhHHHHHHH
Q 006874 124 ATAVVERGLGDDQHPSGYEGALDPWMRS 151 (628)
Q Consensus 124 a~~v~~~~~~d~~~~~g~~~~~~~W~~~ 151 (628)
++.+.+....+.......+..++++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (204)
T 2amj_A 171 MEPLPTFIANDVIKMPDVPRYTEEYRKH 198 (204)
T ss_dssp CEECCCEEECSTTTSCCTTTHHHHHHHH
T ss_pred CeecceEEEeCCCCcHHHHHHHHHHHHH
Confidence 9977544333222111234444444443
No 92
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=98.23 E-value=6.1e-06 Score=80.38 Aligned_cols=148 Identities=12% Similarity=0.120 Sum_probs=106.2
Q ss_pred CCcEEEEEECCc----chHHHHHHHHHHHHHhC--CCCcEEeeCCCCCcc------------------------------
Q 006874 6 RNKLLILYASQT----GNALDAAERIGRESERR--GCPVVVRPVDDYDAR------------------------------ 49 (628)
Q Consensus 6 ~~~v~I~Y~S~t----Gnte~~A~~l~~~l~~~--g~~v~~~~l~~~~~~------------------------------ 49 (628)
||+|+|++||-. ++|.++|+.+.+.+++. |.+++++++.+.+..
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVA 83 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHH
Confidence 689999999955 89999999999999987 888999988653310
Q ss_pred -----CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcChhH-----HHHH
Q 006874 50 -----CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSGYQK-----FNFV 111 (628)
Q Consensus 50 -----~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~y~~-----f~~a 111 (628)
++...|.|||++|.| .+.+|..++.|++++..... +...++|+++.++..-...|.. +..+
T Consensus 84 ~~~~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~ 162 (211)
T 3p0r_A 84 DKYLNQFLEADKVVFGFPLW-NLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMA 162 (211)
T ss_dssp HHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBS
T ss_pred HHHHHHHHhCCEEEEEcChh-cccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHH
Confidence 133689999999999 99999999999999854321 2335889999988763333532 2334
Q ss_pred HHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHH
Q 006874 112 AKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLH 157 (628)
Q Consensus 112 ~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~ 157 (628)
...+...|.-+|++.+.. ..+..... ..+.-++|+++..+.+.
T Consensus 163 ~~~l~~~l~~~G~~~v~~-i~~~g~~~--~~~~~~~~l~~a~~~~~ 205 (211)
T 3p0r_A 163 VKYVASMMGFFGATNMET-VVIEGHNQ--FPDKAEEIITAGLEEAA 205 (211)
T ss_dssp HHHHHHHHHHTTCCSCEE-EEEECTTT--SGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeeE-EEEecccc--CchHHHHHHHHHHHHHH
Confidence 567788888899987643 33332211 23466778777666554
No 93
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=98.23 E-value=1.5e-05 Score=76.19 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=89.3
Q ss_pred CCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc-----------------CCCCCCeEEEEEecCCC
Q 006874 6 RNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR-----------------CLPEEDTVIFVVSTTGQ 66 (628)
Q Consensus 6 ~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~-----------------~l~~~~~vi~~~sT~g~ 66 (628)
+++|+|+.||. ...+.++|+.+++.+. .|++++++++.+++.- .+...|.+||++|.| +
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeY-n 79 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEY-N 79 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCB-T
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhh-c
Confidence 46799999994 5568899999887664 5788888888765321 123789999999999 9
Q ss_pred CCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006874 67 GDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 67 G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
|..|.-.+.|++|+.+.. ....+.||.++++|.+-...+.. .+...+...|..+|+..+.
T Consensus 80 ~s~pg~LKn~iDwlsr~~-~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~ 139 (190)
T 3u7r_A 80 RSYPGMIKNAIDWATRPY-GQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMS 139 (190)
T ss_dssp TBCCHHHHHHHHHHHCST-TCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECC
T ss_pred ccCCHHHHHHHHHhcccc-cCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEcc
Confidence 999999999999996531 23458999999998643333322 3456688888999998763
No 94
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=98.16 E-value=6.6e-06 Score=81.13 Aligned_cols=151 Identities=21% Similarity=0.162 Sum_probs=106.0
Q ss_pred CcEEEEEECCc--chHHHHHHHHHHHHHhCCCCcEEeeCCCCCc-----------------------------------c
Q 006874 7 NKLLILYASQT--GNALDAAERIGRESERRGCPVVVRPVDDYDA-----------------------------------R 49 (628)
Q Consensus 7 ~~v~I~Y~S~t--Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~-----------------------------------~ 49 (628)
|+|+|++||-. |+|..+|+.+.+.+++.|.+|+++++.+... .
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 68999999976 4599999999999998899999999976431 0
Q ss_pred C-------CCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------cccccCCcEEEEEecCCcC---hhH--HH
Q 006874 50 C-------LPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWLEGVRYAVFGLGDSG---YQK--FN 109 (628)
Q Consensus 50 ~-------l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l~~~~~aVfGlGds~---y~~--f~ 109 (628)
+ +...|.|||++|.| .+.+|.-++.|++++..... +.+.|+|+++.++...... |.. ++
T Consensus 82 d~~~~~~~l~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~~~~y~~~g~~ 160 (228)
T 3tem_A 82 DITDEQKKVREADLVIFQFPLY-WFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVN 160 (228)
T ss_dssp HHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTTTTSTTSTT
T ss_pred HHHHHHHHHHhCCEEEEECChh-hcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCCHHHHhhcccc
Confidence 0 23689999999999 99999999999999854321 1246899999988664332 422 11
Q ss_pred HHHHH----HH-HHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhC
Q 006874 110 FVAKK----LD-NRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQID 160 (628)
Q Consensus 110 ~a~~~----l~-~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~ 160 (628)
...+. +. ..|.-+|.+.+-+....+... ..++...+|++++.+.|....
T Consensus 161 ~~~~~~l~p~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~ 214 (228)
T 3tem_A 161 GDSRYFLWPLQHGTLHFCGFKVLAPQISFAPEI--ASEEERKGMVAAWSQRLQTIW 214 (228)
T ss_dssp CCHHHHHHHHHCCCCCTTTCEECCCEEECCTTT--SCHHHHHHHHHHHHHHHHTGG
T ss_pred CCHHHHHHHHHHHHHHhCCceEcCeEEEcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 11222 21 123347888775554444432 256788899999888887543
No 95
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=98.15 E-value=3.2e-05 Score=75.90 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=105.4
Q ss_pred cCCCcEEEEEECC-----cchHHHHHHHHHHHHHhC--CC-CcEEeeCCCCCcc--------------------------
Q 006874 4 EKRNKLLILYASQ-----TGNALDAAERIGRESERR--GC-PVVVRPVDDYDAR-------------------------- 49 (628)
Q Consensus 4 ~~~~~v~I~Y~S~-----tGnte~~A~~l~~~l~~~--g~-~v~~~~l~~~~~~-------------------------- 49 (628)
..||+|+|++||- .++|.++++.+.+.+++. |. +++++++.+.+..
T Consensus 2 ~~MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (223)
T 3u7i_A 2 NAMNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKV 81 (223)
T ss_dssp -CCCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred CccCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHH
Confidence 3589999999994 589999999999999876 57 8999998754321
Q ss_pred ---------CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccC--------ccccc-CCcEEEEEecCCcChh-----
Q 006874 50 ---------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSL--------SKQWL-EGVRYAVFGLGDSGYQ----- 106 (628)
Q Consensus 50 ---------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~--------~~~~l-~~~~~aVfGlGds~y~----- 106 (628)
.+...|.|||++|.| .+.+|..++.|++++..... +...+ .|+++.++......|.
T Consensus 82 ~d~~~~l~~~~~~aD~iv~~~P~y-~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~ 160 (223)
T 3u7i_A 82 TERMSEILQQFKSANTYVIVLPLH-NFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWY 160 (223)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHH
T ss_pred HHHHHHHHHHHHhCCEEEEEcChh-hccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCcc
Confidence 112578999999999 99999999999999865321 11346 7899888876333342
Q ss_pred -HHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006874 107 -KFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 107 -~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
.+..+...+...|.-+|++.+.. ..+........++.+++..+++.+..
T Consensus 161 ~~~~~~~~~l~~~l~~~G~~~~~~-i~~~g~~~~~~~~~~~~a~~~~~~~~ 210 (223)
T 3u7i_A 161 TDVEYSHKYLKAMFNFLGIEDYQI-VRAQGTAVLDPTEVLQNAYKEVEEAA 210 (223)
T ss_dssp HHTCHHHHHHHHHHHHHTCCEEEE-EEECCTTTSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCceeEE-EEEcCccCCCHHHHHHHHHHHHHHHH
Confidence 23345567888888899987743 33332222225566666666654444
No 96
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=97.61 E-value=0.0011 Score=67.07 Aligned_cols=154 Identities=17% Similarity=0.077 Sum_probs=104.1
Q ss_pred CCCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc---------------------------------
Q 006874 5 KRNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDDYDAR--------------------------------- 49 (628)
Q Consensus 5 ~~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~--------------------------------- 49 (628)
..|+|+|+||+- .+.+..+++.+.+.+++.|.+|++++|-+....
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQS 100 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSC
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCc
Confidence 467899999984 467899999999999999999999998543211
Q ss_pred --------CCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhcc----------------CcccccCCcEEEEEecCCc--
Q 006874 50 --------CLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKS----------------LSKQWLEGVRYAVFGLGDS-- 103 (628)
Q Consensus 50 --------~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~----------------~~~~~l~~~~~aVfGlGds-- 103 (628)
.+...|.|||++|.| .+.+|.-++.|++...... .+.+.|+|+++.++-.-+.
T Consensus 101 ~dv~~~~~~l~~aD~iv~~~P~~-w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~~ 179 (280)
T 4gi5_A 101 ADIVAEQEKLLWADTVIFQFPLW-WFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGWA 179 (280)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSCG
T ss_pred HHHHHHHHHHHhCCEEEEEeccc-cccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCCh
Confidence 123578999999999 9999999999999875421 1234578888876544332
Q ss_pred -ChhH--HHHHHHHHHHHH-----HhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHHHhhCC
Q 006874 104 -GYQK--FNFVAKKLDNRL-----LDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRLHQIDP 161 (628)
Q Consensus 104 -~y~~--f~~a~~~l~~~L-----~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l~~~~~ 161 (628)
.|.. |+.....+-..+ .=+|.+.+-+...-+... ..++++.+|++++.+.|...+.
T Consensus 180 ~~y~~~g~~~~~~~~l~~~~~~~~~~~Gm~~l~~f~~~~~~~--~~~~~~~~~~~~~~~~L~~l~~ 243 (280)
T 4gi5_A 180 EHYSPRGINGPIDDILFPIQHGMLFYPGFEVLPPLVFYRTDK--TDAGQFADQCAALAERLDTLWQ 243 (280)
T ss_dssp GGGSTTBTTCCHHHHTHHHHCCCCCTTTCEECCCEEECSGGG--CCHHHHHHHHHHHHHHHHTTTT
T ss_pred HHccccccCCCHHHHHHHHHHHHHHcCCCeECCcEEEecCCC--CCHHHHHHHHHHHHHHHhhhhh
Confidence 2321 222222221111 225888776655433322 2577889999999999876543
No 97
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=97.61 E-value=0.00033 Score=66.02 Aligned_cols=146 Identities=11% Similarity=0.060 Sum_probs=98.3
Q ss_pred CcEEEEEECCc---chHHHHHHHHHHHHHhCCCCcEEeeCCC-CCc----cCCCCCCeEEEEEecCCCCCCChhHHHHHH
Q 006874 7 NKLLILYASQT---GNALDAAERIGRESERRGCPVVVRPVDD-YDA----RCLPEEDTVIFVVSTTGQGDTPDSMKVFWR 78 (628)
Q Consensus 7 ~~v~I~Y~S~t---Gnte~~A~~l~~~l~~~g~~v~~~~l~~-~~~----~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~ 78 (628)
|+++|++||-. +.+.+++....+. ..++++.++.+ .+. +.+...|.|||++|.| .+.+|.-++.|++
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~----~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~~~P~y-~~~~pa~lK~~iD 75 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIEN----FSNVTWHPLVADFNVEQEQSLLLQNDRIILEFPLY-WYSAPALLKQWMD 75 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTT----CTTEEEEECCTTCCHHHHHHHHHTCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhc----CCCEEEEECCCcccHHHHHHHHHhCCEEEEECChh-hccCCHHHHHHHH
Confidence 56999999965 4555555544443 24689999985 221 2345899999999999 9999999999999
Q ss_pred HHHhccC---cccccCCcEEEEEecCCcC---hhH-------HHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhH
Q 006874 79 FLLQKSL---SKQWLEGVRYAVFGLGDSG---YQK-------FNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGAL 145 (628)
Q Consensus 79 ~L~~~~~---~~~~l~~~~~aVfGlGds~---y~~-------f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~ 145 (628)
++..... ..+.++|+++.++...... |.. .....+-+...+.-+|.+.+-+........ ..+++.
T Consensus 76 rv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~--~~~~~~ 153 (177)
T 3ha2_A 76 TVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLY--LEPDAQ 153 (177)
T ss_dssp HHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGG--SCHHHH
T ss_pred HHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCC--CCHHHH
Confidence 8743210 1235899999988764433 321 233445556677788999875544332221 146788
Q ss_pred HHHHHHHHHHHHhh
Q 006874 146 DPWMRSLWRRLHQI 159 (628)
Q Consensus 146 ~~W~~~l~~~l~~~ 159 (628)
++|+++..+.|...
T Consensus 154 ~~~l~~~~~~l~~~ 167 (177)
T 3ha2_A 154 QRLLVAYQQYATNV 167 (177)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccc
Confidence 99999998888653
No 98
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=97.49 E-value=0.0006 Score=73.05 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=96.5
Q ss_pred CCccCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc----------cCCCCCCeEEEEEecCCCCCCC
Q 006874 1 MREEKRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA----------RCLPEEDTVIFVVSTTGQGDTP 70 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~----------~~l~~~~~vi~~~sT~g~G~~p 70 (628)
|....+|+|+|++||-.+++..+.+.+.+.+.+ ...+++.++.+..+ +.+...|.|||++|.| .+.+|
T Consensus 231 m~~~~~mkiLvi~gspr~~ss~~n~~l~~~~~~-~~~v~v~dL~~~~p~~~~d~~~~~~~l~~aD~iv~~~P~y-w~~~P 308 (413)
T 3l9w_A 231 VPRGSSGMILIIYAHPYPHHSHANKRMLEQART-LEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIP 308 (413)
T ss_dssp ------CCEEEEECCSCGGGCSHHHHHHHHHHT-SSSEEEEEHHHHCTTSCCCHHHHHHHHHTCSEEEEEEECB-TTBCC
T ss_pred CCCCCCCCEEEEEECCCcchHHHHHHHHHHHhc-CCCEEEEEchhhCCCCcHHHHHHHHHHHhCCEEEEECchh-hccCC
Confidence 444456899999999888776677778877764 35688887732111 1234899999999999 99999
Q ss_pred hhHHHHHHHHHhccC----cccccCCcEEEEEec-CCc--Chh-----HHHHHHHHHHHHHHhcCCeEeecceeeeCCCC
Q 006874 71 DSMKVFWRFLLQKSL----SKQWLEGVRYAVFGL-GDS--GYQ-----KFNFVAKKLDNRLLDLGATAVVERGLGDDQHP 138 (628)
Q Consensus 71 ~~~~~F~~~L~~~~~----~~~~l~~~~~aVfGl-Gds--~y~-----~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~ 138 (628)
.-++.|++++..... ....++|+++.++.. |.. .|. .|......+...|.-+|++.+-+........
T Consensus 309 a~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~~g~~~- 387 (413)
T 3l9w_A 309 PLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFI- 387 (413)
T ss_dssp HHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEECCSTT-
T ss_pred HHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEEcCCCC-
Confidence 999999999854321 122488999887755 332 221 1222346677778889999775443332221
Q ss_pred CCchhhHHHHHHHHHHHHHh
Q 006874 139 SGYEGALDPWMRSLWRRLHQ 158 (628)
Q Consensus 139 ~g~~~~~~~W~~~l~~~l~~ 158 (628)
-.++.+..+.++..+.|.+
T Consensus 388 -~~d~~~~~~~~~~~~~L~~ 406 (413)
T 3l9w_A 388 -CDDETLEGQARHYKQRLLE 406 (413)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHH
Confidence 1344555555555555543
No 99
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=87.33 E-value=0.6 Score=46.31 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=50.8
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC--CccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY--DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~--~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
.|++|+|+=++. -+.-|..|.+.|++.|++|++++.+++ +..+|.++|+||+.- +..+.-.+...+.+.++..
T Consensus 3 ~m~~vLiV~g~~---~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d-~~~~~l~~~~~~~L~~yV~- 77 (259)
T 3rht_A 3 AMTRVLYCGDTS---LETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSD-YPAERMTAQAIDQLVTMVK- 77 (259)
T ss_dssp ---CEEEEESSC---TTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEES-CCGGGBCHHHHHHHHHHHH-
T ss_pred CCceEEEECCCC---chhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcC-CccccCCHHHHHHHHHHHH-
Confidence 478899992222 245677788888899999999998877 346788999888872 2212223334444444442
Q ss_pred ccCcccccCCcEEEEEe
Q 006874 83 KSLSKQWLEGVRYAVFG 99 (628)
Q Consensus 83 ~~~~~~~l~~~~~aVfG 99 (628)
.|--+.++|
T Consensus 78 --------~GGgLi~~g 86 (259)
T 3rht_A 78 --------AGCGLVMLG 86 (259)
T ss_dssp --------TTCEEEEEC
T ss_pred --------hCCeEEEec
Confidence 255566665
No 100
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=81.44 E-value=3.6 Score=35.04 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=43.2
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCc--EEeeCCCCCccCCCCCCeEEEEEe
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPV--VVRPVDDYDARCLPEEDTVIFVVS 62 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v--~~~~l~~~~~~~l~~~~~vi~~~s 62 (628)
.+++|+++=+|--|++.-++.+|.+.+.+.|+.+ ...++.++.. .+.++|++|....
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~-~~~~~DlIist~~ 78 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET-YMDGVHLICTTAR 78 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT-STTSCSEEEESSC
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh-ccCCCCEEEECCc
Confidence 4678999999999999999999999999999874 5566666542 3456774444433
No 101
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=70.45 E-value=7 Score=33.02 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEe--eCCCCCccCCCCCCeEEE
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVR--PVDDYDARCLPEEDTVIF 59 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~--~l~~~~~~~l~~~~~vi~ 59 (628)
++++|+++ -+..++|.-+|+++.+.+++.|+++++. ...++. +.+.++|.+++
T Consensus 5 ~~mkIlL~-C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~-~~~~~~DvvLL 59 (108)
T 3nbm_A 5 KELKVLVL-CAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHY-DIMGVYDLIIL 59 (108)
T ss_dssp CCEEEEEE-ESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCT-TTGGGCSEEEE
T ss_pred cCceEEEE-CCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHH-hhccCCCEEEE
Confidence 35566544 4556888999999999999999998884 455543 34456775554
No 102
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=69.25 E-value=29 Score=34.43 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=46.3
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCC-CCcEEeeC-------CCCCccCCCCCCeEEEEEecCCCCCCChh-HHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRG-CPVVVRPV-------DDYDARCLPEEDTVIFVVSTTGQGDTPDS-MKVF 76 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g-~~v~~~~l-------~~~~~~~l~~~~~vi~~~sT~g~G~~p~~-~~~F 76 (628)
..+|+|+-|...=.-+..+..|++.|++.| +.|++..- +.++ .+|.++|+||+ .+.| +..++. ...|
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~-~~L~~~D~vV~--~~~~-~~l~~~~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV-LDFSPYQLVVL--DYNG-DSWPEETNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC-CCCTTCSEEEE--CCCS-SCCCHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh-hhhhcCCEEEE--eCCC-CcCCHHHHHHH
Confidence 457888855442236888889999999888 88887753 3444 47889998884 4443 344444 3445
Q ss_pred HHHH
Q 006874 77 WRFL 80 (628)
Q Consensus 77 ~~~L 80 (628)
.+++
T Consensus 80 ~~yV 83 (281)
T 4e5v_A 80 LEYV 83 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 103
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=66.15 E-value=2 Score=36.48 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=37.7
Q ss_pred cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCC-c--EEeeCCCCCccCCCCCCeE
Q 006874 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCP-V--VVRPVDDYDARCLPEEDTV 57 (628)
Q Consensus 4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~-v--~~~~l~~~~~~~l~~~~~v 57 (628)
..|++|+++-+|--|++.-++.+|.+.+.+.|++ + ...++.++.. .+.++|++
T Consensus 16 ~~~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~-~~~~~DlI 71 (110)
T 3czc_A 16 GSMVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKG-LASNYDIV 71 (110)
T ss_dssp --CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHH-HGGGCSEE
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhh-ccCCCcEE
Confidence 4577899999999999999999999999999987 4 4444444431 23456633
No 104
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=64.15 E-value=4.9 Score=33.87 Aligned_cols=52 Identities=10% Similarity=0.134 Sum_probs=38.5
Q ss_pred cCCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcE--EeeCCCCCccCCCCCCeE
Q 006874 4 EKRNKLLILYASQTGNALDAAERIGRESERRGCPVV--VRPVDDYDARCLPEEDTV 57 (628)
Q Consensus 4 ~~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~--~~~l~~~~~~~l~~~~~v 57 (628)
++.|+|+++=+|--|++ -+|++|.+.+.+.|+.++ ..++.++.. .+.++|++
T Consensus 2 ~~~mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~-~~~~~D~I 55 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSE-VVDRFDVV 55 (109)
T ss_dssp CCCEEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHH-HTTTCSEE
T ss_pred CCceEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHh-hcCCCCEE
Confidence 34467999999999999 999999999999998654 445555432 24567744
No 105
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=64.08 E-value=9 Score=37.52 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCCcEEeeCCCC----CccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEe
Q 006874 24 AERIGRESERRGCPVVVRPVDDY----DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFG 99 (628)
Q Consensus 24 A~~l~~~l~~~g~~v~~~~l~~~----~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfG 99 (628)
+..|++.|++.|+.|++..+++. +.+.|.++|+||+.+.+.+.--.++....|.+++. +|.-+.++-
T Consensus 34 ~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~---------~GgG~vgiH 104 (252)
T 1t0b_A 34 HTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVL---------EGMGLIVLH 104 (252)
T ss_dssp HHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHH---------TTCEEEEEG
T ss_pred HHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHHH---------cCCCEEEEc
Confidence 55678888889999998775553 33457799999986555533333334445655553 355555555
Q ss_pred cC
Q 006874 100 LG 101 (628)
Q Consensus 100 lG 101 (628)
.|
T Consensus 105 ~a 106 (252)
T 1t0b_A 105 SG 106 (252)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 106
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=62.20 E-value=17 Score=31.43 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=34.9
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCC-CcEE--eeCCCC
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGC-PVVV--RPVDDY 46 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~-~v~~--~~l~~~ 46 (628)
.|++|+++=++--|++.-++.+|.+.+.+.|+ .+.+ .++.++
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e~ 56 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNL 56 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTCC
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHHC
Confidence 47889999999999999999999999999998 6544 455554
No 107
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=61.72 E-value=15 Score=36.76 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=37.6
Q ss_pred cee-eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006874 230 CFL-KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 230 ~~~-~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
.+. +|++.+.+|+++...++++++|+.+ ....|+||.++.|..+.
T Consensus 28 ~~~~~V~~~~~~t~~~~~~~v~~~~l~~~-~~~~~~pGQ~v~l~~~~ 73 (311)
T 3lo8_A 28 PFTATIVSVESLVGPKAPGETCHIVIDHG-GNVPYWEGQSYGVIPPG 73 (311)
T ss_dssp CEEEEEEEEEECSCTTSSSCEEEEEEECT-TSSCCCTTCEEEEECSS
T ss_pred CeEEEEEeeEeccCCCCCCccEEEEEeCC-CCCcccCCCEEEEeCCC
Confidence 344 9999999997666678999999987 56899999999998764
No 108
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=61.45 E-value=12 Score=32.73 Aligned_cols=120 Identities=19% Similarity=0.160 Sum_probs=65.6
Q ss_pred EEEECCcchHHHHH-HHHHHHHHhCCCCcEEeeCCCCCccCCC----CCC-eEEEEEecCCCCCCChhHHHHHHHHHhcc
Q 006874 11 ILYASQTGNALDAA-ERIGRESERRGCPVVVRPVDDYDARCLP----EED-TVIFVVSTTGQGDTPDSMKVFWRFLLQKS 84 (628)
Q Consensus 11 I~Y~S~tGnte~~A-~~l~~~l~~~g~~v~~~~l~~~~~~~l~----~~~-~vi~~~sT~g~G~~p~~~~~F~~~L~~~~ 84 (628)
|+-++.-|..-.+- ..++..|+..|++|.-.-. +.+++++. +.+ -+|.+|++. +...+.+.++.+.|++..
T Consensus 6 vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~-~~p~e~~v~~a~~~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 6 IVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGV-LSPQELFIKAAIETKADAILVSSLY--GQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp EEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEE-EECHHHHHHHHHHHTCSEEEEEECS--STHHHHHTTHHHHHHHTT
T ss_pred EEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHhcCCCEEEEEecC--cCcHHHHHHHHHHHHhcC
Confidence 44456655544443 3455666788987653222 23333332 222 355555555 445566777888886653
Q ss_pred CcccccCCcEEEEEecC---CcChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHHHHHHH
Q 006874 85 LSKQWLEGVRYAVFGLG---DSGYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRSLWRRL 156 (628)
Q Consensus 85 ~~~~~l~~~~~aVfGlG---ds~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~l~~~l 156 (628)
+.+.++.|=|.. ...| ....+.++++|+..++..+ ....+|.+.+.+.+
T Consensus 83 -----~~~i~v~vGG~~~~~~~~~-------~~~~~~~~~~G~d~~~~~g-----------~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 83 -----LEGILLYVGGNIVVGKQHW-------PDVEKRFKDMGYDRVYAPG-----------TPPEVGIADLKKDL 134 (137)
T ss_dssp -----CTTCEEEEEESCSSSSCCH-------HHHHHHHHHTTCSEECCTT-----------CCHHHHHHHHHHHH
T ss_pred -----CCCCEEEEECCCcCchHhh-------hhhHHHHHHCCCCEEECCC-----------CCHHHHHHHHHHHh
Confidence 345666555532 2233 2244578899999887532 13455655555544
No 109
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=56.13 E-value=5.8 Score=33.33 Aligned_cols=56 Identities=11% Similarity=0.239 Sum_probs=39.8
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEe--eCCCCCccCCCCCCeEEEEEecC
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVR--PVDDYDARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~--~l~~~~~~~l~~~~~vi~~~sT~ 64 (628)
|++|+++=|+--||+ -+++.+.+.+++.|+++++. ++.++.. .+.++| +|+.+|..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~~gi~~~i~a~~~~~~~~-~~~~~D-vil~~pqv 60 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEKYEVPVIIEAFPETLAGE-KGQNAD-VVLLGPQI 60 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHHSCCSEEEEEECSSSTTH-HHHHCS-EEEECTTS
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHh-hccCCC-EEEEccch
Confidence 678999999999888 89999999999999986654 4444331 223566 44444444
No 110
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=51.27 E-value=40 Score=33.63 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=56.1
Q ss_pred CCccCCCcEEEEEECCcch--HHHHHHHHHHHHHhCCCCcEEeeCCCCC-c----cCC-CCCCeEEEEEecCCCCCCChh
Q 006874 1 MREEKRNKLLILYASQTGN--ALDAAERIGRESERRGCPVVVRPVDDYD-A----RCL-PEEDTVIFVVSTTGQGDTPDS 72 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~tGn--te~~A~~l~~~l~~~g~~v~~~~l~~~~-~----~~l-~~~~~vi~~~sT~g~G~~p~~ 72 (628)
|...+|++++|++-...|+ +.+..+.+...|.+.|+.+++...+... . .++ ..++.| +++. |+| +
T Consensus 3 m~~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~v-v~~G--GDG----T 75 (304)
T 3s40_A 3 MTKTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLI-IVFG--GDG----T 75 (304)
T ss_dssp --CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEE-EEEE--CHH----H
T ss_pred CccCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEE-EEEc--cch----H
Confidence 6667799999999887765 6688889999999999887776544321 0 111 244543 3333 666 3
Q ss_pred HHHHHHHHHhccCcccccCCcEEEEEecCCcC
Q 006874 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG 104 (628)
Q Consensus 73 ~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~ 104 (628)
.......|... -.+..++++=+|..+
T Consensus 76 l~~v~~~l~~~------~~~~~l~iiP~Gt~N 101 (304)
T 3s40_A 76 VFECTNGLAPL------EIRPTLAIIPGGTCN 101 (304)
T ss_dssp HHHHHHHHTTC------SSCCEEEEEECSSCC
T ss_pred HHHHHHHHhhC------CCCCcEEEecCCcHH
Confidence 44444544321 135778888777654
No 111
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=50.58 E-value=55 Score=31.95 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=33.9
Q ss_pred CCcEEEEEECCcchHHH---HHHHHHHHHHhCCCCcEEeeCCCCCccCC
Q 006874 6 RNKLLILYASQTGNALD---AAERIGRESERRGCPVVVRPVDDYDARCL 51 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~---~A~~l~~~l~~~g~~v~~~~l~~~~~~~l 51 (628)
+|+|+|+++.++---+. .+..+.+.+.+.|+++.+++.++.....+
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~ 50 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL 50 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGT
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHh
Confidence 36899999877642222 56788888999999999999886554444
No 112
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=46.66 E-value=41 Score=28.07 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=35.5
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
.|+.|.+++++--|-++.+...|.+...+.|+.+..+|+++
T Consensus 28 ~m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~ 68 (107)
T 2fgx_A 28 EPRKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDG 68 (107)
T ss_dssp CCCCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTT
T ss_pred CccEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 46778888888999999999999988888899999999885
No 113
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=42.49 E-value=22 Score=35.41 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=33.9
Q ss_pred CCcEEEEEEC---------------CcchHHHHHHHHHHHHHhCCCCcEEeeCCC
Q 006874 6 RNKLLILYAS---------------QTGNALDAAERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 6 ~~~v~I~Y~S---------------~tGnte~~A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
||+|+++-.+ ..|.++..+..+++.|.+.|++|.++....
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~ 57 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPG 57 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTT
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 6788877666 469999999999999999999999887764
No 114
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=40.42 E-value=1.5e+02 Score=31.28 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=65.0
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCC---CCCCeEEEEEecCCC---------C-----C-
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCL---PEEDTVIFVVSTTGQ---------G-----D- 68 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l---~~~~~vi~~~sT~g~---------G-----~- 68 (628)
.+|.|+ |+. | ...+..|.+.|++.|+++..+.-+ .+.+++ ....+.+++++..+. | -
T Consensus 197 ~~vnil-G~~--~-~~~~~ei~~lL~~~Gi~v~~~~~~-~~~~el~~~~~A~~ni~~~~~~~~~A~~Le~~~giP~~~~~ 271 (460)
T 2xdq_A 197 PPLVLF-GSL--P-DPVVTQLTLELKKQGIKVSGWLPA-KRYTELPVIDEGYYVAGVNPFLSRTATTLIRRRKCQLITAP 271 (460)
T ss_dssp CCEEEE-SCC--C-HHHHHHHHHHHGGGTCCEEEEESC-SSGGGCCCCCTTCEEEESSTTCHHHHHHHHHTTCCEEECCC
T ss_pred CcEEEE-Eec--C-ccHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHccccCcEEEEcCHhHHHHHHHHHHHcCCCceecC
Confidence 356655 775 3 555778999999999998764322 233344 355566665555421 1 1
Q ss_pred C---ChhHHHHHHHHHhcc-Cc------------------ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeE
Q 006874 69 T---PDSMKVFWRFLLQKS-LS------------------KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 69 ~---p~~~~~F~~~L~~~~-~~------------------~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~ 126 (628)
. +++...|++.|.+.- .+ ...+.|++++|+|=++..+ -+.+.|.++|++.
T Consensus 272 ~P~G~~~T~~~Lr~ia~~~g~~~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~--------~la~~L~elGm~v 343 (460)
T 2xdq_A 272 FPIGPDGTRTWIEQICATFGIQPQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEI--------SLARFLIRCGMRV 343 (460)
T ss_dssp CSBHHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHH--------HHHHHHHHTTCEE
T ss_pred cCccHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHH--------HHHHHHHHCCCEE
Confidence 1 145566666654321 01 1237899999997554433 4555677899988
Q ss_pred ee
Q 006874 127 VV 128 (628)
Q Consensus 127 v~ 128 (628)
+.
T Consensus 344 v~ 345 (460)
T 2xdq_A 344 LE 345 (460)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 115
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=38.39 E-value=31 Score=31.40 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=33.2
Q ss_pred cCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006874 90 LEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 90 l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
.+..+++|+-.||..-.-++..+..+.++|+++|++...-
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~ 47 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDK 47 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEE
Confidence 5678999999999965567777888999999999986643
No 116
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=35.89 E-value=1.6e+02 Score=28.05 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=75.9
Q ss_pred cCCCcEEEEEECCc---chHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC------C--CCCCeEEEEEecCCCCCCChh
Q 006874 4 EKRNKLLILYASQT---GNALDAAERIGRESERRGCPVVVRPVDDYDARC------L--PEEDTVIFVVSTTGQGDTPDS 72 (628)
Q Consensus 4 ~~~~~v~I~Y~S~t---Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~------l--~~~~~vi~~~sT~g~G~~p~~ 72 (628)
.+...|.|+..+.. .-...+.+.+.+.+.+.|+.+.+.+.+.-.... + ...+.+|+..+.. ++
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~- 79 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEP-----ND- 79 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCT-----TC-
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCC-----Cc-
Confidence 34566777777654 457788888999999999988777654321110 1 2567777653221 11
Q ss_pred HHHHHHHHHhccCcccccCCcEEEEEecCCc--C--h--hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHH
Q 006874 73 MKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS--G--Y--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALD 146 (628)
Q Consensus 73 ~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds--~--y--~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~ 146 (628)
..++.+... +..+.+++.... . | ..+..+++..-+.|.+.|.+++.= ..++.. .....
T Consensus 80 --~~~~~l~~~--------~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~-i~~~~~-----~~~~~ 143 (288)
T 3gv0_A 80 --PRVRFMTER--------NMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRKRIAV-IVPPSR-----FSFHD 143 (288)
T ss_dssp --HHHHHHHHT--------TCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCCEEEE-ECCCTT-----SHHHH
T ss_pred --HHHHHHhhC--------CCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEE-EcCCcc-----cchHH
Confidence 234555433 445555543211 1 1 235567888888899999998742 222221 12334
Q ss_pred HHHHHHHHHHHh
Q 006874 147 PWMRSLWRRLHQ 158 (628)
Q Consensus 147 ~W~~~l~~~l~~ 158 (628)
...+.+.+++.+
T Consensus 144 ~R~~gf~~~l~~ 155 (288)
T 3gv0_A 144 HARKGFNRGIRD 155 (288)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666666654
No 117
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=34.99 E-value=35 Score=34.01 Aligned_cols=41 Identities=7% Similarity=0.043 Sum_probs=31.9
Q ss_pred CCcEEEEEECCcchHHH---HHHHHHHHHHhCCCCcEEeeCCCC
Q 006874 6 RNKLLILYASQTGNALD---AAERIGRESERRGCPVVVRPVDDY 46 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~---~A~~l~~~l~~~g~~v~~~~l~~~ 46 (628)
+++|.|+||..+.--+- -|+.+.+.|.+.|+++.+++..+.
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~ 56 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAER 56 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 46899999977764333 578888999999999998886554
No 118
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=34.28 E-value=33 Score=34.78 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=32.5
Q ss_pred CccCCCcEEEEEEC---CcchHHHHHHHHHHHHHhCCCCcEEeeCCCC
Q 006874 2 REEKRNKLLILYAS---QTGNALDAAERIGRESERRGCPVVVRPVDDY 46 (628)
Q Consensus 2 ~~~~~~~v~I~Y~S---~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~ 46 (628)
+...||+|+++-.. ..|.++..+..+++.|.+.|++|.++.....
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~ 63 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASP 63 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCT
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 44568888777643 3388899999999999999999998887654
No 119
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=32.73 E-value=41 Score=34.01 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=33.3
Q ss_pred cE-EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC
Q 006874 8 KL-LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD 47 (628)
Q Consensus 8 ~v-~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~ 47 (628)
.+ +++|.|.|...+..|+.+.+.+.+.|+++.+..++.+.
T Consensus 92 d~~v~Ll~SDT~~G~l~AeiLke~l~~~G~~v~~~~V~gL~ 132 (324)
T 3qyf_A 92 EIYVFLYSTNTSNSQLAGEVIRDYLIEEGIRSELVTVKTIS 132 (324)
T ss_dssp GEEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHHHHcCCeeEEEEcCCCC
Confidence 45 57999999999999999999999999877666655543
No 120
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.72 E-value=2.1e+02 Score=27.34 Aligned_cols=134 Identities=17% Similarity=0.275 Sum_probs=75.8
Q ss_pred CccCCCcEEEEEE----C-CcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccC--C------CCCCeEEEEEecCCCCC
Q 006874 2 REEKRNKLLILYA----S-QTGNALDAAERIGRESERRGCPVVVRPVDDYDARC--L------PEEDTVIFVVSTTGQGD 68 (628)
Q Consensus 2 ~~~~~~~v~I~Y~----S-~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~--l------~~~~~vi~~~sT~g~G~ 68 (628)
+..+...|.++.. + ...--..+.+.+.+.+.+.|+.+.+.+.++ .... + ...+.+|+..... .
T Consensus 2 ~~~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~-~-- 77 (294)
T 3qk7_A 2 SLGRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP-GEKYQSLIHLVETRRVDALIVAHTQP-E-- 77 (294)
T ss_dssp ---CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT-TCCCHHHHHHHHHTCCSEEEECSCCS-S--
T ss_pred CCCccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC-hhhHHHHHHHHHcCCCCEEEEeCCCC-C--
Confidence 3334566777776 2 233456788889999999999988887664 2111 1 1567777654432 1
Q ss_pred CChhHHHHHHHHHhccCcccccCCcEEEEEecCC--cCh----hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCch
Q 006874 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGD--SGY----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYE 142 (628)
Q Consensus 69 ~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGd--s~y----~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~ 142 (628)
+ ..++.+... +..+.+++... ..+ .....+++..-+.|.++|.+++.= ..+... .
T Consensus 78 --~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~-i~~~~~-----~ 138 (294)
T 3qk7_A 78 --D---FRLQYLQKQ--------NFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQRIAF-VSTDAR-----I 138 (294)
T ss_dssp --C---HHHHHHHHT--------TCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCCCEEE-EEESSC-----C
T ss_pred --h---HHHHHHHhC--------CCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCceEEE-EeCCcc-----c
Confidence 1 334555433 44555555421 111 135567788888888999988752 223221 2
Q ss_pred hhHHHHHHHHHHHHHh
Q 006874 143 GALDPWMRSLWRRLHQ 158 (628)
Q Consensus 143 ~~~~~W~~~l~~~l~~ 158 (628)
.......+.+.+++.+
T Consensus 139 ~~~~~R~~Gf~~al~~ 154 (294)
T 3qk7_A 139 SYVDQRLQGYVQTMSE 154 (294)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHH
Confidence 2344556666677754
No 121
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=31.79 E-value=72 Score=31.02 Aligned_cols=38 Identities=11% Similarity=0.325 Sum_probs=31.4
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecC-CCCccCCCCEEEEecCC
Q 006874 233 KMIKNQPLTKSGSGKDVHHFEFEFVS-AAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~-~~~~y~~GD~l~i~p~N 275 (628)
+|++++.+|+ +++.++|..++ ..+.|+||.++.|..+.
T Consensus 13 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~ 51 (290)
T 2r6h_A 13 EVLSNKNVST-----FIKEFVVKLPEGETMNFKSGSYAQIKIPK 51 (290)
T ss_dssp EEEEEEESSS-----SEEEEEEECSTTCCCCCCTTCEEEEEECS
T ss_pred EEEEeeecCC-----CeEEEEEEcCCCCccccCCCceEEEEccc
Confidence 8999999986 58899999874 36789999999997554
No 122
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=31.20 E-value=39 Score=34.47 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.1
Q ss_pred CCEEEEeCCCC--hHHHHHHHHHHHHhc
Q 006874 473 VPLILIGPGTG--CAPFRGFVEERAIQS 498 (628)
Q Consensus 473 ~piimIa~GtG--IAPfrs~l~~~~~~~ 498 (628)
+.||+.|+||| |-|.+++.++...++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g 30 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG 30 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC
Confidence 56888999997 889999999988764
No 123
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=30.85 E-value=55 Score=27.66 Aligned_cols=38 Identities=18% Similarity=0.341 Sum_probs=29.2
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCc
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYDA 48 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~ 48 (628)
.-+.|.|||+.+.+...|+.+ ++.|+.+.++++..+.|
T Consensus 15 dv~iv~~Gs~~~~a~eA~~~L----~~~Gi~v~vi~~r~~~P 52 (118)
T 3ju3_A 15 DITFVTWGSQKGPILDVIEDL----KEEGISANLLYLKMFSP 52 (118)
T ss_dssp SEEEEEEGGGHHHHHHHHHHH----HHTTCCEEEEEECSSCS
T ss_pred CEEEEEECccHHHHHHHHHHH----HHCCCceEEEEECeEec
Confidence 345677999999998888765 45799999998876543
No 124
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=29.25 E-value=40 Score=32.06 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCCCcEEeeCCCCCc--------cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccCCcEE
Q 006874 24 AERIGRESERRGCPVVVRPVDDYDA--------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRY 95 (628)
Q Consensus 24 A~~l~~~l~~~g~~v~~~~l~~~~~--------~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~ 95 (628)
+..+++.|++.|+.+..+.+=++.+ ..+.+++.+||.|+.- .+.|++.+.. .+.+.++
T Consensus 13 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~a--------V~~~~~~l~~------~l~~~~~ 78 (240)
T 3mw8_A 13 NAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSA--------VSFATPWLKD------QWPKATY 78 (240)
T ss_dssp CHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHH--------HHHHHHHHTT------CCCSSEE
T ss_pred hHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHH--------HHHHHHHHHh------hCcCCeE
Confidence 3456667777887764443322111 1245677766655432 5667776642 1556787
Q ss_pred EEEecCCcChhHHHHHHHHHHHHHHhcCCeE
Q 006874 96 AVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 96 aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~ 126 (628)
++.| ....+.|++.|...
T Consensus 79 ~aVG-------------~~Ta~~L~~~G~~~ 96 (240)
T 3mw8_A 79 YAVG-------------DATADALALQGITA 96 (240)
T ss_dssp EESS-------------HHHHHHHHHTTCCC
T ss_pred EEEC-------------HHHHHHHHHcCCCC
Confidence 7776 55566788889865
No 125
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=29.01 E-value=64 Score=31.38 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhCCCCcEEeeCCCCCc-----------cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCccccc
Q 006874 22 DAAERIGRESERRGCPVVVRPVDDYDA-----------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWL 90 (628)
Q Consensus 22 ~~A~~l~~~l~~~g~~v~~~~l~~~~~-----------~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l 90 (628)
.-|..+++.|++.|+.+..+.+=++.+ .++.+++.+||.|+. ..+.|++.+..... .+
T Consensus 24 ~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~n--------aV~~~~~~l~~~~~---~~ 92 (269)
T 3re1_A 24 EESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKP--------AARLAIELIDEVWP---QP 92 (269)
T ss_dssp HHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHH--------HHHHHHHHHHHHCS---SC
T ss_pred HHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHH--------HHHHHHHHHHHhCC---Cc
Confidence 346677888888997765444322111 134567776665543 26667777754321 14
Q ss_pred CCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEeec
Q 006874 91 EGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 91 ~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
.++++++.| ....+.|++.|.+...+
T Consensus 93 ~~~~i~aVG-------------~~Ta~aL~~~G~~~~~~ 118 (269)
T 3re1_A 93 PMQPWFSVG-------------SATGQILLDYGLDASWP 118 (269)
T ss_dssp CCSCEEESS-------------HHHHHHHHHTTCCEECC
T ss_pred ccCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 456777776 45556788889876554
No 126
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=28.53 E-value=63 Score=27.04 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=53.5
Q ss_pred CCcEEEEEECCcchHH--HHHHHHHHHHHhCCCCcEE--eeC----CCCCccCCCCCCeEEEEEecCCCCCCChhHHHHH
Q 006874 6 RNKLLILYASQTGNAL--DAAERIGRESERRGCPVVV--RPV----DDYDARCLPEEDTVIFVVSTTGQGDTPDSMKVFW 77 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte--~~A~~l~~~l~~~g~~v~~--~~l----~~~~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~ 77 (628)
+|+++++=+--||-+- -.|+.|.+.+++.|+++++ ... +..+.+++.+.|.||+.+.+- - ++..+|
T Consensus 2 ~mkivaVtaCptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~-v----~~~~RF- 75 (106)
T 2m1z_A 2 KRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTK-V----RNKERF- 75 (106)
T ss_dssp CCEEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSC-C----STHHHH-
T ss_pred CccEEEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEecccc-c----cchhcc-
Confidence 4788888888888654 4589999999999987543 433 445556677888888876543 1 234444
Q ss_pred HHHHhccCcccccCCcEEEEEecCC
Q 006874 78 RFLLQKSLSKQWLEGVRYAVFGLGD 102 (628)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~aVfGlGd 102 (628)
.|+++.-.+..+
T Consensus 76 -------------~gk~v~~~~v~~ 87 (106)
T 2m1z_A 76 -------------DGKVVLEVPVSA 87 (106)
T ss_dssp -------------TTSEEEEECTTH
T ss_pred -------------CCCcEEEEcHHH
Confidence 467777776543
No 127
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=27.47 E-value=59 Score=27.47 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=43.2
Q ss_pred CCcEEEEEECCcchHHH--HHHHHHHHHHhCCCCcEE--eeC----CCCCccCCCCCCeEEEEEecC
Q 006874 6 RNKLLILYASQTGNALD--AAERIGRESERRGCPVVV--RPV----DDYDARCLPEEDTVIFVVSTT 64 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~--~A~~l~~~l~~~g~~v~~--~~l----~~~~~~~l~~~~~vi~~~sT~ 64 (628)
||+|+.+-+.-||-+-- .|+.|.+..++.|+.+++ ... +..+.+++...|.||+.+.+-
T Consensus 5 ~mkIvaVTaCptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~ 71 (111)
T 2kyr_A 5 SKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVT 71 (111)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSC
T ss_pred cccEEEEEcCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCCC
Confidence 47788889999996554 689999999999997665 221 344556677888888876644
No 128
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=27.46 E-value=49 Score=36.20 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=31.1
Q ss_pred CCccCCCcEEEE-EECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCC--CCCeEEEE
Q 006874 1 MREEKRNKLLIL-YASQTGNALDAAERIGRESERRGCPVVVRPVDDYDARCLP--EEDTVIFV 60 (628)
Q Consensus 1 ~~~~~~~~v~I~-Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~--~~~~vi~~ 60 (628)
|+++...+|+|+ |||++ +..+|++| ++.|+.++++..+ .+.+++. +.+.||+-
T Consensus 2 ~~~~~~~~IlilD~Gs~~--~~~I~r~l----re~Gv~~eiv~~~-~~~~~i~~~~~dgIIls 57 (556)
T 3uow_A 2 MEGEEYDKILVLNFGSQY--FHLIVKRL----NNIKIFSETKDYG-VELKDIKDMNIKGVILS 57 (556)
T ss_dssp -----CCEEEEEESSCTT--HHHHHHHH----HHTTCCEEEEETT-CCGGGTTTSCEEEEEEC
T ss_pred CCCCCCCEEEEEECCCcc--HHHHHHHH----HHCCCeEEEEECC-CCHHHHhhcCCCEEEEC
Confidence 777777778777 88765 66666655 4578888888764 3445554 44555554
No 129
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=27.04 E-value=49 Score=25.14 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=32.5
Q ss_pred CcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC
Q 006874 7 NKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 7 ~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
.++.++|++--|.++++...+.+.+.+.|..+.+++++.
T Consensus 2 ~~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~ 40 (80)
T 2k8s_A 2 ASKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGT 40 (80)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTT
T ss_pred cceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 357899999999999999999888877777777887764
No 130
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=27.03 E-value=2.7e+02 Score=23.15 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=48.3
Q ss_pred EecCCCCCCChhHHHHHHHHHhccCcccccCCcEEEEEecCCc---ChhHHHHHHHHHHHHHHhcCCeEeecceeeeCCC
Q 006874 61 VSTTGQGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDS---GYQKFNFVAKKLDNRLLDLGATAVVERGLGDDQH 137 (628)
Q Consensus 61 ~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds---~y~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~ 137 (628)
.|.-.++...+-...+.+.|+.. |++|-+=.+|-. .|..-..+.+...+.+.+.|+.|+.-...+|...
T Consensus 15 ~Plg~~~svs~~Va~~i~vl~~s--------Gl~y~~~pmgT~IEGe~devm~vv~~~~e~~~~~G~~RV~t~iKId~R~ 86 (109)
T 1yqh_A 15 VPQAKTKDVYSVVDKAIEVVQQS--------GVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEVITSIKIHYRP 86 (109)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHS--------CSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCT
T ss_pred EeCCCCCcHHHHHHHHHHHHHHc--------CCCeEecCCccEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecC
Confidence 44432234566677777777654 444433332211 5888888889999999999999999999999986
Q ss_pred C
Q 006874 138 P 138 (628)
Q Consensus 138 ~ 138 (628)
+
T Consensus 87 d 87 (109)
T 1yqh_A 87 S 87 (109)
T ss_dssp T
T ss_pred C
Confidence 5
No 131
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=26.80 E-value=40 Score=32.51 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCCcEEeeCCCC---CccC-------C-CCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc-ccccC
Q 006874 24 AERIGRESERRGCPVVVRPVDDY---DARC-------L-PEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS-KQWLE 91 (628)
Q Consensus 24 A~~l~~~l~~~g~~v~~~~l~~~---~~~~-------l-~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~-~~~l~ 91 (628)
++.+.+.|++.|+.+..+.+=++ +... + ..++.+||.|+. ..+.|++.+.....+ ...+.
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~--------aV~~~~~~l~~~~~~~~~~l~ 90 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGV--------GVRDLLEAGKALGLDLEGPLA 90 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHH--------HHHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHH--------HHHHHHHHHHHhCchHHHHhc
Confidence 56677777778876543332111 1122 3 257766665542 267777777654322 11244
Q ss_pred CcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeE
Q 006874 92 GVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATA 126 (628)
Q Consensus 92 ~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~ 126 (628)
+.+++++| ....+.|++.|.+.
T Consensus 91 ~~~i~avG-------------~~Ta~~l~~~G~~~ 112 (261)
T 1wcw_A 91 KAFRLARG-------------AKAARALKEAGLPP 112 (261)
T ss_dssp HSEEEESS-------------HHHHHHHHHTTCCC
T ss_pred CCeEEEEC-------------HHHHHHHHHcCCCC
Confidence 67777776 45555677889764
No 132
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=26.75 E-value=2e+02 Score=27.30 Aligned_cols=133 Identities=12% Similarity=0.074 Sum_probs=77.7
Q ss_pred CCCcEEEEEECCcc-hHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc------CC--CCCCeEEEEEecCCCCCCChhHHH
Q 006874 5 KRNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDSMKV 75 (628)
Q Consensus 5 ~~~~v~I~Y~S~tG-nte~~A~~l~~~l~~~g~~v~~~~l~~~~~~------~l--~~~~~vi~~~sT~g~G~~p~~~~~ 75 (628)
....|.++..+.+. -...+.+.+.+.+.+.|+.+.+++.+.-... .+ ...+.+|+..... .+ .
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~~---~ 78 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-----EH---D 78 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-----CC---H
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-----Ch---H
Confidence 45667777765443 3567888899999999999888876542111 11 2567777654432 11 2
Q ss_pred HHHHHHhccCcccccCCcEEEEEecCCcC--h----hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHH
Q 006874 76 FWRFLLQKSLSKQWLEGVRYAVFGLGDSG--Y----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWM 149 (628)
Q Consensus 76 F~~~L~~~~~~~~~l~~~~~aVfGlGds~--y----~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~ 149 (628)
.++.+.. .+..+.+++..... + ..+..+++.+-+.|.+.|.+++.= ..+... ......+.
T Consensus 79 ~~~~~~~--------~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~-i~~~~~-----~~~~~~R~ 144 (291)
T 3egc_A 79 YLRTELP--------KTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHTRIGA-IVGSAG-----LMTSRERL 144 (291)
T ss_dssp HHHHSSC--------TTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEE-ECSCTT-----SHHHHHHH
T ss_pred HHHHhhc--------cCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEE-EeCCCC-----CcCHHHHH
Confidence 3344322 25566666543221 1 235667788888888999887742 222211 23455667
Q ss_pred HHHHHHHHhh
Q 006874 150 RSLWRRLHQI 159 (628)
Q Consensus 150 ~~l~~~l~~~ 159 (628)
+.+.+.+.+.
T Consensus 145 ~gf~~~l~~~ 154 (291)
T 3egc_A 145 KGFRAAMSAA 154 (291)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 7777777653
No 133
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=26.34 E-value=4.3e+02 Score=27.08 Aligned_cols=107 Identities=7% Similarity=0.061 Sum_probs=54.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEecCCCC-
Q 006874 474 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ- 552 (628)
Q Consensus 474 piimIa~GtGIAPfrs~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~Sr~~~~- 552 (628)
+.+++=.+.=-.-+++.++........ ++++++||+....|+ ++.++.+.+. + ...+++..+...
T Consensus 297 ~~~i~D~Ahnp~s~~~~l~~l~~~~~~---~~~i~V~g~~~~kd~--~~~~~~l~~~---~------d~vi~~~~~~~r~ 362 (422)
T 1w78_A 297 PRVIFDVAHNPHAAEYLTGRMKALPKN---GRVLAVIGMLHDKDI--AGTLAWLKSV---V------DDWYCAPLEGPRG 362 (422)
T ss_dssp TEEEEECCCSHHHHHHHHHHHHHSCSC---SCEEEEECCBTTSCH--HHHHHHHHTT---C------SEEEECCCCSSSB
T ss_pred CeEEEECCCCHHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCH--HHHHHHHHhh---C------CEEEEECCCCCCC
Confidence 455665556566677777776554322 678899998554454 4444443332 3 222333221110
Q ss_pred -----------c-cchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHH
Q 006874 553 -----------K-VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE 596 (628)
Q Consensus 553 -----------k-~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L~~ 596 (628)
+ .++.+ +.+..+.+.+...++..|++||+- .|..++++.|.+
T Consensus 363 ~~~~~l~~~~~~~~~~~~-~~~ai~~a~~~~~~~d~vLv~GS~-~~~~~~~~~l~~ 416 (422)
T 1w78_A 363 ATAEQLLEHLGNGKSFDS-VAQAWDAAMADAKAEDTVLVCGSF-HTVAHVMEVIDA 416 (422)
T ss_dssp CCHHHHHHHHSSCEECSS-HHHHHHHHHHHCCTTCEEEEESSH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhcccCCC-HHHHHHHHHHhcCCCCEEEEEeeH-HHHHHHHHHHHh
Confidence 0 01111 111222223333458899999996 676666655543
No 134
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=25.41 E-value=83 Score=30.10 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCCcEEeeCCCCC-----------ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcccccC
Q 006874 23 AAERIGRESERRGCPVVVRPVDDYD-----------ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSKQWLE 91 (628)
Q Consensus 23 ~A~~l~~~l~~~g~~v~~~~l~~~~-----------~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~~~l~ 91 (628)
-+..+.+.|++.|+.+..+.+=++. ..++.+++.+||.|+. ..+.|++.+..... .+.
T Consensus 17 ~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~--------aV~~~~~~l~~~~~---~~~ 85 (254)
T 4es6_A 17 ECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKP--------AARLGLERLDRYWP---QPP 85 (254)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHH--------HHHHHHHHHHHHCS---SCC
T ss_pred HhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHH--------HHHHHHHHHHHhCC---Ccc
Confidence 4566777888889765444332211 1234567776665543 26667777754321 134
Q ss_pred CcEEEEEecCCcChhHHHHHHHHHHHHHHhcCCeEee
Q 006874 92 GVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 92 ~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
++++++.| ....+.|++.|.+...
T Consensus 86 ~~~i~aVG-------------~~Ta~~L~~~G~~~~~ 109 (254)
T 4es6_A 86 QQTWCSVG-------------AATAAILEAYGLDVTY 109 (254)
T ss_dssp SCEEEESS-------------HHHHHHHHHHTCCEEC
T ss_pred cCEEEEEC-------------HHHHHHHHHcCCCccc
Confidence 56777776 4455567777876544
No 135
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=25.29 E-value=1.3e+02 Score=28.65 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=56.1
Q ss_pred EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC---ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCc
Q 006874 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD---ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLS 86 (628)
Q Consensus 10 ~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~---~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~ 86 (628)
-+++++ ||+. .+...+++.++ .|+.|.+.+-.+.- ...+.+.+.+.+..||- |.-|--++..-+.|...
T Consensus 93 dLVIaA-T~d~-~~N~~I~~~ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~--G~sP~la~~iR~~ie~~--- 164 (223)
T 3dfz_A 93 FFIVVA-TNDQ-AVNKFVKQHIK-NDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTD--GASPLLTKRIKEDLSSN--- 164 (223)
T ss_dssp SEEEEC-CCCT-HHHHHHHHHSC-TTCEEEC-----CCSEECCEEEEETTEEEEEECT--TSCHHHHHHHHHHHHHH---
T ss_pred CEEEEC-CCCH-HHHHHHHHHHh-CCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECC--CCCcHHHHHHHHHHHHH---
Confidence 344544 6665 55666777766 78776555532221 11112345677888876 66787777777777553
Q ss_pred ccccCCcEEEEEecCCcChhHHHHHHHHHHHHHHhcCC
Q 006874 87 KQWLEGVRYAVFGLGDSGYQKFNFVAKKLDNRLLDLGA 124 (628)
Q Consensus 87 ~~~l~~~~~aVfGlGds~y~~f~~a~~~l~~~L~~lGa 124 (628)
+. .+|+.+......+.+++++...
T Consensus 165 ---lp-----------~~~~~~~~~~~~~R~~vk~~~~ 188 (223)
T 3dfz_A 165 ---YD-----------ESYTQYTQFLYECRVLIHRLNV 188 (223)
T ss_dssp ---SC-----------THHHHHHHHHHHHHHHHHHCCS
T ss_pred ---cc-----------HHHHHHHHHHHHHHHHHHHHCC
Confidence 11 2588888889999999987543
No 136
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.10 E-value=4.1e+02 Score=24.89 Aligned_cols=133 Identities=14% Similarity=0.052 Sum_probs=76.0
Q ss_pred CCcEEEEEECCcc-hHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc------CC--CCCCeEEEEEecCCCCCCChhHHHH
Q 006874 6 RNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDSMKVF 76 (628)
Q Consensus 6 ~~~v~I~Y~S~tG-nte~~A~~l~~~l~~~g~~v~~~~l~~~~~~------~l--~~~~~vi~~~sT~g~G~~p~~~~~F 76 (628)
..+|.++..+.+. --..+.+.+.+.+.+.|+.+.+.+.+.-... .+ ...+.+|+... . +......
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~-~-----~~~~~~~ 78 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLG-N-----LDVLNPW 78 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESS-C-----HHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCC-C-----hhhhHHH
Confidence 3567777665443 2357888999999999999888876532111 11 15677776532 1 1334555
Q ss_pred HHHHHhccCcccccCCcEEEEEecCCcC---h--hHHHHHHHHHHHHHHh--cCCeEeecceeeeCCCCCCchhhHHHHH
Q 006874 77 WRFLLQKSLSKQWLEGVRYAVFGLGDSG---Y--QKFNFVAKKLDNRLLD--LGATAVVERGLGDDQHPSGYEGALDPWM 149 (628)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~aVfGlGds~---y--~~f~~a~~~l~~~L~~--lGa~~v~~~~~~d~~~~~g~~~~~~~W~ 149 (628)
++.+... |..+.+++..... | .....+++.+-+.|.+ .|.+++.=. .+.. .......+.
T Consensus 79 ~~~~~~~--------~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i-~~~~-----~~~~~~~R~ 144 (291)
T 3l49_A 79 LQKINDA--------GIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVF-NGFY-----SVPVCKIRY 144 (291)
T ss_dssp HHHHHHT--------TCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEE-CSCT-----TSHHHHHHH
T ss_pred HHHHHHC--------CCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCceEEEE-eCCC-----CCchHHHHH
Confidence 6666443 4455555432211 1 1345667777778888 888887432 2221 123445666
Q ss_pred HHHHHHHHh
Q 006874 150 RSLWRRLHQ 158 (628)
Q Consensus 150 ~~l~~~l~~ 158 (628)
+.+.+.+.+
T Consensus 145 ~gf~~~l~~ 153 (291)
T 3l49_A 145 DQMKYVLEA 153 (291)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777777753
No 137
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.67 E-value=2.6e+02 Score=24.73 Aligned_cols=67 Identities=13% Similarity=0.289 Sum_probs=40.2
Q ss_pred EEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC---CccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHh
Q 006874 10 LILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---DARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQ 82 (628)
Q Consensus 10 ~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~---~~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~ 82 (628)
.++||+ |++..+|+.++..+...|..+...+-.+. ....+.+.+++ ++.|.. |.. .+.....+.+++
T Consensus 52 I~i~G~--G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~v-I~iS~s--G~t-~~~~~~~~~ak~ 121 (183)
T 2xhz_A 52 VVVMGM--GASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVV-IAISNS--GES-SEITALIPVLKR 121 (183)
T ss_dssp EEEEEC--HHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEE-EEECSS--SCC-HHHHHHHHHHHT
T ss_pred EEEEee--cHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEE-EEEeCC--CCC-HHHHHHHHHHHH
Confidence 466774 78889999999999988988766542211 11233445544 444444 433 445555565544
No 138
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=24.35 E-value=54 Score=34.61 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.4
Q ss_pred CcchHHHHHHHHHHHHHhCCCCcEEeeCC
Q 006874 16 QTGNALDAAERIGRESERRGCPVVVRPVD 44 (628)
Q Consensus 16 ~tGnte~~A~~l~~~l~~~g~~v~~~~l~ 44 (628)
..|-++..+..+++.|.+.|++|.++...
T Consensus 31 ~~GG~~~~~~~la~~L~~~G~~V~v~~~~ 59 (499)
T 2r60_A 31 DFGGQLVYVKEVSLALAEMGVQVDIITRR 59 (499)
T ss_dssp TBSHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CCCCeeehHHHHHHHHHhcCCeEEEEeCC
Confidence 46889999999999999999999887654
No 139
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=24.21 E-value=36 Score=35.32 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=43.3
Q ss_pred CCCcEEEEEECCcc-hHHHHHHHHHHHHHhCCCCcEEeeCCCCCccCCCCCC
Q 006874 5 KRNKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDARCLPEED 55 (628)
Q Consensus 5 ~~~~v~I~Y~S~tG-nte~~A~~l~~~l~~~g~~v~~~~l~~~~~~~l~~~~ 55 (628)
..+++.|+-||.+| +...++++|.+.+++.|.+..++-+++.++..|.+.+
T Consensus 263 dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF~ 314 (378)
T 3lzd_A 263 DAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGFP 314 (378)
T ss_dssp TCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTSC
T ss_pred cCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCC
Confidence 34678999999988 5678899999999999999999999999887776554
No 140
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.81 E-value=33 Score=31.05 Aligned_cols=40 Identities=8% Similarity=-0.045 Sum_probs=29.5
Q ss_pred cCCcEEEEEecCCcChh--HHHHHHHHHHHHHHhcCCeEeec
Q 006874 90 LEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 90 l~~~~~aVfGlGds~y~--~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
.+..+++|+-.||.-+. -++..+..+.+.|+++|++...-
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~ 46 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQP 46 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCC
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEE
Confidence 45679999999998653 35666788999999999986643
No 141
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=23.75 E-value=96 Score=28.94 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=30.2
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecC
Q 006874 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPS 274 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~ 274 (628)
+|++++.+++ +++.++|..+ ....|+||.++.|..+
T Consensus 6 ~V~~~~~~~~-----~~~~l~l~~~-~~~~~~pGq~v~l~~~ 41 (232)
T 1qfj_A 6 KVTSVEAITD-----TVYRVRIVPD-AAFSFRAGQYLMVVMD 41 (232)
T ss_dssp EEEEEEESSS-----SCEEEEEEES-SCCCCCTTCEEEEESS
T ss_pred EEEEEEecCC-----CEEEEEEecC-CCCCcCCCCEEEEECC
Confidence 7888888875 5789999876 4679999999999865
No 142
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=23.53 E-value=1.3e+02 Score=23.63 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=22.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCEEEe
Q 006874 599 SKEGEASRDSAANWLKALQRAGRYHVE 625 (628)
Q Consensus 599 ~~~~~~~~~~a~~~l~~l~~~~Ry~~d 625 (628)
++..|++..+..+.+.+|+++|+..-.
T Consensus 41 ae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 41 VKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 344578999999999999999997643
No 143
>3vsj_A 2-amino-5-chlorophenol 1,6-dioxygenase alpha SUBU; CNBC,oxidoreductase, 2-His-1-carboxylate facial triad motif, extradiol dioxygenase,; HET: 2XP; 2.30A {Comamonas testosteroni} PDB: 3vsh_A 3vsi_A* 3vsg_A*
Probab=23.40 E-value=3.6e+02 Score=25.97 Aligned_cols=80 Identities=14% Similarity=0.000 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCCCcEEeeCCCCCc------------cCCCCCCeEEEEEecCCCCCCChhHHHHHHHHHhccCcc
Q 006874 20 ALDAAERIGRESERRGCPVVVRPVDDYDA------------RCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLLQKSLSK 87 (628)
Q Consensus 20 te~~A~~l~~~l~~~g~~v~~~~l~~~~~------------~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~~~~~~~ 87 (628)
...+|++|.+.+.+.|+.+...+-..... .+..+...|-+...+ ...|....+|=+.|...- .
T Consensus 89 d~~la~~i~~~~~~~g~~~~~~~~~~~~lDHg~~vpl~~l~~~~~~~pvv~i~~~~---~~~~~~~~~lG~al~~~~-~- 163 (271)
T 3vsj_A 89 DTALAEACVTSSPLHGVHARGVNYDGFPIDTGTITACTLMGIGTDAFPLVVGSNNL---YHSGEITEKLAALAVDCA-K- 163 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECCTTCCCCHHHHHHHHHHTCSSSSSCEEEEEEET---TCCHHHHHHHHHHHHHHH-H-
T ss_pred CHHHHHHHHHHHHHCCCcEEeecCCCCCcchhHHHHHHHHhccCCCCCEEEEECCC---CCCHHHHHHHHHHHHHHH-H-
Confidence 47899999999999998875443222110 011123444444432 345555556555554321 0
Q ss_pred cccCCcEEEEEecCCcChh
Q 006874 88 QWLEGVRYAVFGLGDSGYQ 106 (628)
Q Consensus 88 ~~l~~~~~aVfGlGds~y~ 106 (628)
-.+.++.|+|+||.+..
T Consensus 164 --~~~~~vlii~SGdlsH~ 180 (271)
T 3vsj_A 164 --DQNKRVAVVGVGGLSGS 180 (271)
T ss_dssp --HTTCCEEEEEECCSCCC
T ss_pred --HcCCCEEEEEECccccC
Confidence 12678999999998753
No 144
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=23.08 E-value=1.1e+02 Score=29.41 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=37.2
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC--ccCCCCCCeEEEEEe
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD--ARCLPEEDTVIFVVS 62 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~--~~~l~~~~~vi~~~s 62 (628)
+|+|+|+=.....+...+.+. |++.|+++.++....-+ +.++.+++.+|+..+
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~----l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDF----LAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHH----HHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHH----HHHCCCeEEEEeccCCCcCcCccccCCEEEECCC
Confidence 578999987777777777765 45689999988865432 345667887666543
No 145
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=22.94 E-value=85 Score=25.77 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=29.0
Q ss_pred CChhHHHHHHHHHhccCcccccCCcEEEEEecCCcChh--HHHHHHHHHHHHHHhcCCe
Q 006874 69 TPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSGYQ--KFNFVAKKLDNRLLDLGAT 125 (628)
Q Consensus 69 ~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y~--~f~~a~~~l~~~L~~lGa~ 125 (628)
+.+..+.+++.+ ++..++.||+-|...|+ .||. +..+.|.++|..
T Consensus 3 ~s~~~~~~v~~~---------i~~~~Vvvy~k~t~~~p~Cp~C~---~ak~~L~~~gi~ 49 (109)
T 3ipz_A 3 LTPQLKDTLEKL---------VNSEKVVLFMKGTRDFPMCGFSN---TVVQILKNLNVP 49 (109)
T ss_dssp CCHHHHHHHHHH---------HTSSSEEEEESBCSSSBSSHHHH---HHHHHHHHTTCC
T ss_pred CCHHHHHHHHHH---------HccCCEEEEEecCCCCCCChhHH---HHHHHHHHcCCC
Confidence 345667777765 44567899987655553 4664 455567788865
No 146
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=22.87 E-value=1.2e+02 Score=25.94 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=33.2
Q ss_pred ccCCCcEEEEEECC--cchHHHHHHHHHHHHHhCCCCcEEeeCCC
Q 006874 3 EEKRNKLLILYASQ--TGNALDAAERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 3 ~~~~~~v~I~Y~S~--tGnte~~A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
++.+++++|+..|- +......|-.++..+.+.|.+|.++=..+
T Consensus 12 ~~~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~d 56 (134)
T 3mc3_A 12 EEQXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIX 56 (134)
T ss_dssp --CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ccccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 34578899998887 66777788889988888998888776654
No 147
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=22.78 E-value=1.9e+02 Score=27.49 Aligned_cols=132 Identities=13% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCCcEEEEEEC------CcchHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc------CC--CCCCeEEEEEecCCCCCCC
Q 006874 5 KRNKLLILYAS------QTGNALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTP 70 (628)
Q Consensus 5 ~~~~v~I~Y~S------~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~~~------~l--~~~~~vi~~~sT~g~G~~p 70 (628)
+...|.++..+ ...-...+.+.+.+.+.+.|+.+.+.+.+.-... .+ ...+.+|+..+.. .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~-~---- 81 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE-N---- 81 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT-T----
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC-C----
Confidence 45667777766 3445678888899999999998877665431110 11 2567777654332 1
Q ss_pred hhHHHHHHHHHhccCcccccCCcEEEEEecCCcC-----h--hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchh
Q 006874 71 DSMKVFWRFLLQKSLSKQWLEGVRYAVFGLGDSG-----Y--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEG 143 (628)
Q Consensus 71 ~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlGds~-----y--~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~ 143 (628)
+ ..++.+... +..+.+++..... | .....+++...+.|.+.|.+++.= ..+... ..
T Consensus 82 ~---~~~~~l~~~--------~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~-i~~~~~-----~~ 144 (292)
T 3k4h_A 82 D---RIIQYLHEQ--------NFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAF-IGGGSD-----LL 144 (292)
T ss_dssp C---HHHHHHHHT--------TCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHTTCCCEEE-EESCTT-----BH
T ss_pred h---HHHHHHHHC--------CCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEE-EeCccc-----ch
Confidence 1 344555433 4555555543211 1 135567788888888899987742 222211 22
Q ss_pred hHHHHHHHHHHHHHh
Q 006874 144 ALDPWMRSLWRRLHQ 158 (628)
Q Consensus 144 ~~~~W~~~l~~~l~~ 158 (628)
......+.+.+++.+
T Consensus 145 ~~~~R~~gf~~~l~~ 159 (292)
T 3k4h_A 145 VTRDRLAGMSDALKL 159 (292)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344556666777754
No 148
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=22.65 E-value=2.5e+02 Score=27.97 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=31.3
Q ss_pred CCcEEEEEECCcc--hHHHHHHHHHHHHHhCCCCcEEeeCC
Q 006874 6 RNKLLILYASQTG--NALDAAERIGRESERRGCPVVVRPVD 44 (628)
Q Consensus 6 ~~~v~I~Y~S~tG--nte~~A~~l~~~l~~~g~~v~~~~l~ 44 (628)
|+++.|+|-...| .++++++.+...|.+.|+.+.+....
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~ 64 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATE 64 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEec
Confidence 4579999988877 57888999999999998877665543
No 149
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=22.15 E-value=1.7e+02 Score=32.66 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=58.9
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCC---C--ccC--CCCCCeEEEEEecCC------------
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDY---D--ARC--LPEEDTVIFVVSTTG------------ 65 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~---~--~~~--l~~~~~vi~~~sT~g------------ 65 (628)
.+++|.|+-+...|.-+.-+..+.+.|++.|+.|.++....- + .++ -..+|.||+-...-|
T Consensus 528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~ 607 (688)
T 2iuf_A 528 DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPS 607 (688)
T ss_dssp TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCC
T ss_pred CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccc
Confidence 346899987777899999999999999999999998876431 1 112 236787777654332
Q ss_pred ------CCCCChhHHHHHHHHHhccCcccccCCcEEEEEecC
Q 006874 66 ------QGDTPDSMKVFWRFLLQKSLSKQWLEGVRYAVFGLG 101 (628)
Q Consensus 66 ------~G~~p~~~~~F~~~L~~~~~~~~~l~~~~~aVfGlG 101 (628)
.=...+.+..|++...+ .||.+|.+|-|
T Consensus 608 ~~~~~~~L~~~~~~~~~v~~~~~--------~gKpIaAIc~a 641 (688)
T 2iuf_A 608 AGSGASTLYPAGRPLNILLDAFR--------FGKTVGALGSG 641 (688)
T ss_dssp TTSCCCSSSCTTHHHHHHHHHHH--------HTCEEEEEGGG
T ss_pred cccchhhcccChHHHHHHHHHHH--------cCCEEEEECch
Confidence 01123345556555432 37888888744
No 150
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.04 E-value=3.8e+02 Score=25.05 Aligned_cols=106 Identities=14% Similarity=0.041 Sum_probs=65.5
Q ss_pred CCcEEEEEECCc-chHHHHHHHHHHHHHhCCCCcEEeeCCCCCc------cCC--CCCCeEEEEEecCCCCCCChhHHHH
Q 006874 6 RNKLLILYASQT-GNALDAAERIGRESERRGCPVVVRPVDDYDA------RCL--PEEDTVIFVVSTTGQGDTPDSMKVF 76 (628)
Q Consensus 6 ~~~v~I~Y~S~t-Gnte~~A~~l~~~l~~~g~~v~~~~l~~~~~------~~l--~~~~~vi~~~sT~g~G~~p~~~~~F 76 (628)
...|.++..+.+ .--..+.+.+.+.+.+.|+.+.+.+.+.-.. ..+ ...+.+|+..... ...
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---------~~~ 77 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---------PQT 77 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---------HHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---------HHH
Confidence 456777776543 3456788888899999999988887654211 011 2566666654321 345
Q ss_pred HHHHHhccCcccccCCcEEEEEecCCc--Ch----hHHHHHHHHHHHHHHhcCCeEee
Q 006874 77 WRFLLQKSLSKQWLEGVRYAVFGLGDS--GY----QKFNFVAKKLDNRLLDLGATAVV 128 (628)
Q Consensus 77 ~~~L~~~~~~~~~l~~~~~aVfGlGds--~y----~~f~~a~~~l~~~L~~lGa~~v~ 128 (628)
++.+... +..+.+++.... .+ .....+++..-+.|.+.|.+++.
T Consensus 78 ~~~l~~~--------~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~ 127 (276)
T 3jy6_A 78 VQEILHQ--------QMPVVSVDREMDACPWPQVVTDNFEAAKAATTAFRQQGYQHVV 127 (276)
T ss_dssp HHHHHTT--------SSCEEEESCCCTTCSSCEEECCHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHC--------CCCEEEEecccCCCCCCEEEEChHHHHHHHHHHHHHcCCCeEE
Confidence 5655443 455555554211 11 13566788888899999999875
No 151
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=21.99 E-value=89 Score=29.73 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=31.5
Q ss_pred cEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCC
Q 006874 8 KLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 8 ~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
++.|+|.+.....+.+|+.|++.|++.|+++++..++.
T Consensus 129 ~l~l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~~~~~ 166 (258)
T 3lvu_A 129 ALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIEKVDN 166 (258)
T ss_dssp CCEEEEETTCHHHHHHHHHHHHHHHTTTCCCEEEEECH
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCeeEEEecCH
Confidence 56777777666788999999999999999998877653
No 152
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=21.97 E-value=77 Score=30.09 Aligned_cols=38 Identities=8% Similarity=0.255 Sum_probs=30.9
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEe-c-CC---CCccCCCCEEEEecCC
Q 006874 233 KMIKNQPLTKSGSGKDVHHFEFEF-V-SA---AIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~-~-~~---~~~y~~GD~l~i~p~N 275 (628)
+|++++.+++ +++.++|.. + +. ...|+||.++.|..++
T Consensus 14 ~V~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~ 56 (250)
T 1tvc_A 14 EVVGLNWVSS-----NTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG 56 (250)
T ss_dssp EBCCCEEEET-----TEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS
T ss_pred EEEEEEEcCC-----CeEEEEEEecCCCCcccccCcCCCcEEEEEeCC
Confidence 8889999875 588999987 5 43 5789999999998653
No 153
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.84 E-value=2.8e+02 Score=26.17 Aligned_cols=134 Identities=11% Similarity=0.068 Sum_probs=77.7
Q ss_pred CcEEEEEECCcc-hHHHHHHHHHHHHHhCCCCcEEeeCCCCCcc------CC--CCCCeEEEEEecCCCCCCChhHHHHH
Q 006874 7 NKLLILYASQTG-NALDAAERIGRESERRGCPVVVRPVDDYDAR------CL--PEEDTVIFVVSTTGQGDTPDSMKVFW 77 (628)
Q Consensus 7 ~~v~I~Y~S~tG-nte~~A~~l~~~l~~~g~~v~~~~l~~~~~~------~l--~~~~~vi~~~sT~g~G~~p~~~~~F~ 77 (628)
+.|.++..+.+. -...+.+.+.+.+.+.|+.+.+.+.+.-... .+ ...+.+|+..... ..++.....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKS---ALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSST---TSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccc---cccCCcHHHH
Confidence 567777766543 3677888999999999999888876532111 11 2567777654332 1222233455
Q ss_pred HHHHhccCcccccCCcEEEEEecCCc--C--h--hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHHH
Q 006874 78 RFLLQKSLSKQWLEGVRYAVFGLGDS--G--Y--QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMRS 151 (628)
Q Consensus 78 ~~L~~~~~~~~~l~~~~~aVfGlGds--~--y--~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~~ 151 (628)
+.+... +..+.+++.... . | ...-.+++..-+.|.+.|.+++.= ..+. . . .......+.
T Consensus 93 ~~~~~~--------~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~-i~~~-~----~-~~~~~R~~g 157 (298)
T 3tb6_A 93 LNLEKN--------GIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMG-IFKA-D----D-TQGVKRMNG 157 (298)
T ss_dssp HHHHHT--------TCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEE-EEES-S----S-HHHHHHHHH
T ss_pred HHHHhc--------CCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEE-EcCC-C----C-ccHHHHHHH
Confidence 555443 455555553211 1 1 235567788888899999988752 2221 1 1 234455666
Q ss_pred HHHHHHh
Q 006874 152 LWRRLHQ 158 (628)
Q Consensus 152 l~~~l~~ 158 (628)
+.+.+.+
T Consensus 158 f~~~l~~ 164 (298)
T 3tb6_A 158 FIQAHRE 164 (298)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6677754
No 154
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=21.79 E-value=89 Score=31.79 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=31.3
Q ss_pred CCCcEEEEEECC-cchHHHHHHHHHHHHHhCCCCcEEeeCC
Q 006874 5 KRNKLLILYASQ-TGNALDAAERIGRESERRGCPVVVRPVD 44 (628)
Q Consensus 5 ~~~~v~I~Y~S~-tGnte~~A~~l~~~l~~~g~~v~~~~l~ 44 (628)
.+|+|+++-.+. .|-++..+..+++.|.+.|++|.++...
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~ 79 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIE 79 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 467787776553 5889999999999999999887766543
No 155
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.74 E-value=31 Score=31.64 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=31.7
Q ss_pred cCCcEEEEEecCCcCh------h-HHHHHHHHHHHHHHhcCCeEeec
Q 006874 90 LEGVRYAVFGLGDSGY------Q-KFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 90 l~~~~~aVfGlGds~y------~-~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
.+..+++|+-.||.-+ + -++..+..+.++|+++|++...-
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~ 59 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGY 59 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEE
Confidence 5678999999999765 2 35666788999999999986643
No 156
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=21.73 E-value=1.3e+02 Score=29.94 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=30.9
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCC-C-CccCCCCEEEEecCC
Q 006874 233 KMIKNQPLTKSGSGKDVHHFEFEFVSA-A-IEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~-~-~~y~~GD~l~i~p~N 275 (628)
+|++++.+++ +++.++|..++. . ..|+||.++.|..++
T Consensus 12 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~ 51 (321)
T 2pia_A 12 KIASKEKIAR-----DIWSFELTDPQGAPLPPFEAGANLTVAVPN 51 (321)
T ss_dssp EEEEEEEEET-----TEEEEEEECTTCCCCCCCCTTCEEEEECTT
T ss_pred EEEEEEEcCC-----CEEEEEEEcCCCCcCCCCCCCCEEEEECCC
Confidence 8999999985 588999998742 2 389999999998764
No 157
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=21.10 E-value=1.4e+02 Score=23.48 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=25.3
Q ss_pred CCcEEEEEECCcchHH-----HHHHHHHHHHHhCCCCcEEeeCCC
Q 006874 6 RNKLLILYASQTGNAL-----DAAERIGRESERRGCPVVVRPVDD 45 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte-----~~A~~l~~~l~~~g~~v~~~~l~~ 45 (628)
|++|.|+..|..+.++ .-|.. .|.+.|++.+.++++.
T Consensus 1 M~~v~ly~~~~C~~c~~~~~~~~ak~---~L~~~~i~~~~~di~~ 42 (93)
T 1t1v_A 1 MSGLRVYSTSVTGSREIKSQQSEVTR---ILDGKRIQYQLVDISQ 42 (93)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHH---HHHHTTCCCEEEETTS
T ss_pred CCCEEEEEcCCCCCchhhHHHHHHHH---HHHHCCCceEEEECCC
Confidence 4578888888888884 33433 3556788877777763
No 158
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=20.84 E-value=3.8e+02 Score=27.86 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=54.9
Q ss_pred CEEEEeCCCChHHHHHHHHHHH------HhcCCCCCCCeEEEEcCCCCCccccHHHHHHhHhcCCCcccCCCCcEEEEEe
Q 006874 474 PLILIGPGTGCAPFRGFVEERA------IQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 547 (628)
Q Consensus 474 piimIa~GtGIAPfrs~l~~~~------~~~~~~~~~~~~L~~G~R~~~d~ly~~el~~~~~~~g~l~~~~~~~~~~a~S 547 (628)
|.+++=.+.=-.-++++++... ..... ++++++||+-...|+ ++-++.+... +. .++ ++.
T Consensus 312 ~~vi~D~AHNp~a~~all~~l~~~~~~~~~~~~---~r~i~V~G~~~dkd~--~~~~~~l~~~---~~-----~v~-~~~ 377 (437)
T 3nrs_A 312 PLLILDVAHNPHAARYLVNRLAQVINPVNASKQ---GKVRAVVGMLSDKDI--AGTLACLSER---VD-----EWY-CAP 377 (437)
T ss_dssp TEEEECCCCSHHHHHHHHHHHHHTC-----------CCEEEEECCBTTBCH--HHHHHHHTTT---CC-----EEE-ECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHhhcchhhhcCC---CCEEEEEeCCCCCCH--HHHHHHHHhc---CC-----EEE-EeC
Confidence 5666666666666788887765 32122 689999998754463 4445444332 31 333 333
Q ss_pred cCCCC------------c-cchhhhHHHcHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHH
Q 006874 548 RKQPQ------------K-VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF 594 (628)
Q Consensus 548 r~~~~------------k-~yVqd~l~~~~~~v~~~l~~~~~iyvCG~~~~M~~~v~~~L 594 (628)
-+... . .++.+ +.+..+.+.+...++..|.|||+- -|.-++++.|
T Consensus 378 ~~~~r~~~~~~l~~~~~~~~~~~d-~~~Ai~~a~~~a~~~D~VLv~GS~-~~v~~~~~~~ 435 (437)
T 3nrs_A 378 LEGPRGASAGQLAEHLVSARQFSD-VETAWRQAMQDADTQDVVIVCGSF-HTVAHVMAAL 435 (437)
T ss_dssp CSSTTBCCHHHHHTTCSSCEECSS-HHHHHHHHHHHCCTTCEEEEESSH-HHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHhhCCCcCC-HHHHHHHHHHhcCCCCeEEEEehH-HHHHHHHHHh
Confidence 22211 0 11111 112222233333458899999996 7776666543
No 159
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=20.78 E-value=1.8e+02 Score=28.74 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcE---EeeCCCCCccC----CC--CCCeEEEEEecCCCCCCChhHHH
Q 006874 5 KRNKLLILYASQTGNALDAAERIGRESERRGCPVV---VRPVDDYDARC----LP--EEDTVIFVVSTTGQGDTPDSMKV 75 (628)
Q Consensus 5 ~~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~---~~~l~~~~~~~----l~--~~~~vi~~~sT~g~G~~p~~~~~ 75 (628)
..++|.|+| +.+...+..++.+.+.+++.|+++. .+.....+... +. ..+.|++.++ . ..+..
T Consensus 138 g~~~ia~i~-~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~-~------~~a~~ 209 (368)
T 4eyg_A 138 GIKKVATLT-SDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVP-A------GQGGN 209 (368)
T ss_dssp TCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECC-T------TCHHH
T ss_pred CCCEEEEEe-cCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEecc-c------hHHHH
Confidence 357899998 4566778889999999999998643 22223222111 11 3344443222 1 15778
Q ss_pred HHHHHHhccCcccccCCcEEEEEecCC
Q 006874 76 FWRFLLQKSLSKQWLEGVRYAVFGLGD 102 (628)
Q Consensus 76 F~~~L~~~~~~~~~l~~~~~aVfGlGd 102 (628)
|++.+.... +.+..+.++|.++
T Consensus 210 ~~~~~~~~g-----~~~~~v~~~~~~~ 231 (368)
T 4eyg_A 210 FMKQFAERG-----LDKSGIKVIGPGD 231 (368)
T ss_dssp HHHHHHHTT-----GGGTTCEEEEETT
T ss_pred HHHHHHHcC-----CCcCCceEEecCc
Confidence 888887654 3333366777654
No 160
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=20.64 E-value=78 Score=30.41 Aligned_cols=38 Identities=5% Similarity=0.079 Sum_probs=30.9
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCCCCccCCCCEEEEecCC
Q 006874 233 KMIKNQPLTKSGSGKDVHHFEFEFVSAAIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~~~~y~~GD~l~i~p~N 275 (628)
+|++++.+++ +++.++|+.++....|+||.++.|..++
T Consensus 9 ~V~~~~~~t~-----~~~~l~l~~~~~~~~~~pGQ~v~l~~~~ 46 (262)
T 1ep3_B 9 TVVSQREVAY-----NIFEMVLKGTLVDEMDLPGQFLHLAVPN 46 (262)
T ss_dssp EEEEEEEEET-----TEEEEEEESGGGGGCCSTTCEEEECCSC
T ss_pred EEEEEEEecC-----CEEEEEEEcCcccccCCCCceEEEEcCC
Confidence 8889999975 5889999877324689999999998764
No 161
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=20.50 E-value=65 Score=30.52 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCccCCCcEEEEEECCcchHH---HHHHHHHHHHHhCCCCc
Q 006874 1 MREEKRNKLLILYASQTGNAL---DAAERIGRESERRGCPV 38 (628)
Q Consensus 1 ~~~~~~~~v~I~Y~S~tGnte---~~A~~l~~~l~~~g~~v 38 (628)
.....|++|.|+-||-.|+.. +.|+.|++.|.+.|+.+
T Consensus 8 ~~~~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~v 48 (215)
T 2a33_A 8 MQKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDL 48 (215)
T ss_dssp CCCCSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEE
T ss_pred cccCCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEE
No 162
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=20.34 E-value=2.8e+02 Score=27.96 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=54.4
Q ss_pred CCcEEEEEECCcchHHHHHHHHHHHHHhCCCCcEEeeCCCCC----ccCCCCCCeEEEEEecCCCCCCChhHHHHHHHHH
Q 006874 6 RNKLLILYASQTGNALDAAERIGRESERRGCPVVVRPVDDYD----ARCLPEEDTVIFVVSTTGQGDTPDSMKVFWRFLL 81 (628)
Q Consensus 6 ~~~v~I~Y~S~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~~----~~~l~~~~~vi~~~sT~g~G~~p~~~~~F~~~L~ 81 (628)
|+++.|+-||.+ ..+|++|++.|.-.-.++++....+=. ..+=.+.+-++++.||++ ..-++..+.+-.+.
T Consensus 1 m~~~~if~g~~~---~~La~~ia~~lg~~l~~~~~~~F~dGE~~v~i~esvrg~dV~iiqs~~~--p~nd~lmeLl~~id 75 (326)
T 3s5j_B 1 MPNIKIFSGSSH---QDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCG--EINDNLMELLIMIN 75 (326)
T ss_dssp --CEEEEECSSC---CHHHHHHHHHTTCCCCCEEEEECTTSCEEEEECSCCTTCEEEEECCCCS--CHHHHHHHHHHHHH
T ss_pred CCceEEEECCCC---HHHHHHHHHHhCCceeeeEEeECCCCCEEEEECCCcCCCcEEEEecCCC--CccHHHHHHHHHHH
Confidence 345666665544 478999998775221234444444311 111112345677777762 11133333322221
Q ss_pred hccCcccccCCcEEEE-E---ecC--CcChh-HHHHHHHHHHHHHHhcCCeEeec
Q 006874 82 QKSLSKQWLEGVRYAV-F---GLG--DSGYQ-KFNFVAKKLDNRLLDLGATAVVE 129 (628)
Q Consensus 82 ~~~~~~~~l~~~~~aV-f---GlG--ds~y~-~f~~a~~~l~~~L~~lGa~~v~~ 129 (628)
..+ . .+-+++.+ + |-. |+... -=.-.+|.+.+.|...|+.++.-
T Consensus 76 A~k--~--asA~rIt~ViPY~~YaRQDr~~~~repisak~vA~lL~~~G~drvit 126 (326)
T 3s5j_B 76 ACK--I--ASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIIT 126 (326)
T ss_dssp HHH--H--TTCSEEEEEESSCTTTTCCSCTTSSCCCHHHHHHHHHHHHTCSEEEE
T ss_pred HHH--h--cCCcEEEEeccCccccccCCcCCCCCCEeHHHHHHHHHHcCCCEEEE
Confidence 111 0 22334433 2 211 11111 00125789999999999998853
No 163
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.19 E-value=4.6e+02 Score=24.57 Aligned_cols=132 Identities=8% Similarity=-0.001 Sum_probs=74.0
Q ss_pred CCCcEEEEEEC--CcchHHHHHHHHHHHHHhCCCCcEEeeCCCC--C----ccCCC--CCCeEEEEEecCCCCCCChhHH
Q 006874 5 KRNKLLILYAS--QTGNALDAAERIGRESERRGCPVVVRPVDDY--D----ARCLP--EEDTVIFVVSTTGQGDTPDSMK 74 (628)
Q Consensus 5 ~~~~v~I~Y~S--~tGnte~~A~~l~~~l~~~g~~v~~~~l~~~--~----~~~l~--~~~~vi~~~sT~g~G~~p~~~~ 74 (628)
+...|.|+..+ ...-...+.+.+.+.+.+.|+.+.++..+.- . ...+. ..+.+|+.... .+..
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-------~~~~ 82 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS-------NYDL 82 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC-------HHHH
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC-------cccH
Confidence 45668888773 3445678889999999999998877653211 1 11122 45667664321 1122
Q ss_pred HHHHHHHhccCcccccCCcEEEEEecCCcCh----hHHHHHHHHHHHHHHhcCCeEeecceeeeCCCCCCchhhHHHHHH
Q 006874 75 VFWRFLLQKSLSKQWLEGVRYAVFGLGDSGY----QKFNFVAKKLDNRLLDLGATAVVERGLGDDQHPSGYEGALDPWMR 150 (628)
Q Consensus 75 ~F~~~L~~~~~~~~~l~~~~~aVfGlGds~y----~~f~~a~~~l~~~L~~lGa~~v~~~~~~d~~~~~g~~~~~~~W~~ 150 (628)
.+.+ + . -.+..+.+++.-...+ .....+++.+-+.|.+.|.+++.= ..++.. ........+
T Consensus 83 ~~~~-~--~------~~~iPvV~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~-i~~~~~-----~~~~~~R~~ 147 (289)
T 3g85_A 83 EYLN-K--A------SLTLPIILFNRLSNKYSSVNVDNYKMGEKASLLFAKKRYKSAAA-ILTESL-----NDAMDNRNK 147 (289)
T ss_dssp HHHH-H--C------CCSSCEEEESCCCSSSEEEEECHHHHHHHHHHHHHHTTCCBCEE-EECCCS-----SHHHHHHHH
T ss_pred HHHH-h--c------cCCCCEEEECCCCCCCCEEEeCHHHHHHHHHHHHHHcCCCEEEE-EeCCcc-----cccHHHHHH
Confidence 2222 1 1 1356666666432222 235667888888899999988742 222211 223444556
Q ss_pred HHHHHHHh
Q 006874 151 SLWRRLHQ 158 (628)
Q Consensus 151 ~l~~~l~~ 158 (628)
.+.+++.+
T Consensus 148 gf~~~l~~ 155 (289)
T 3g85_A 148 GFIETCHK 155 (289)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66677754
No 164
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=20.00 E-value=1.6e+02 Score=27.59 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=30.8
Q ss_pred eeeeeeecCCCCCCCcEEEEEEEecCC--CCccCCCCEEEEecCC
Q 006874 233 KMIKNQPLTKSGSGKDVHHFEFEFVSA--AIEYEVGDVLEILPSQ 275 (628)
Q Consensus 233 ~v~~~~~lt~~~~~~~~~~i~l~~~~~--~~~y~~GD~l~i~p~N 275 (628)
+|++.+.+++ +++.++|..++. ...|+||.++.|..+.
T Consensus 7 ~V~~~~~~~~-----~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~ 46 (243)
T 4eh1_A 7 VVREKQVESA-----YVTSFVLVPADGGAVLDYQPGQYIGIEVTP 46 (243)
T ss_dssp EEEEEEECSS-----SEEEEEEEESSCSCCCCCCTTCEEEEEECC
T ss_pred EEEEEEEcCC-----CeEEEEEEeCCCCcCCCcCCCCEEEEEEec
Confidence 7888888875 688999998732 3789999999998764
Done!