BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006875
         (628 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0KK55|VKIND_MOUSE Protein very KIND OS=Mus musculus GN=Kndc1 PE=1 SV=2
          Length = 1742

 Score = 37.0 bits (84), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 27  RKRPALASVIV---EALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTGRSSPK 83
           R+RP LAS+I    E ++  S  +LC SL  I RRV+S E   A  +L      GR +P+
Sbjct: 163 RERPDLASIIALCEEKMQPVSSCRLCRSLSAIGRRVLSIESFGAFQELSENTWRGRPAPR 222

Query: 84  RIEGP 88
            + GP
Sbjct: 223 NV-GP 226


>sp|P38824|COX23_YEAST Cytochrome c oxidase-assembly factor COX23, mitochondrial
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=COX23 PE=1 SV=1
          Length = 151

 Score = 35.0 bits (79), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 325 YVYYPDDPRNVGVVFNNIYEFCGLIADGQYHSADSLSESQKVHVDTLVKKAYD 377
           + YYPDDP N      N Y+F  L AD QY+  D   ES K+    L +  YD
Sbjct: 76  FQYYPDDPENPV----NKYKF-ALKADSQYY--DPCEESSKLSFQCLERNDYD 121


>sp|A6TDB1|COBQ_KLEP7 Cobyric acid synthase OS=Klebsiella pneumoniae subsp. pneumoniae
           (strain ATCC 700721 / MGH 78578) GN=cobQ PE=3 SV=1
          Length = 507

 Score = 34.3 bits (77), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 136 PESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKE-REGKRPLL 179
           P++L   D+V+L G  N   D  W +E  ++H V++ R+ K PLL
Sbjct: 285 PQALADADLVILPGSKNTLGDLCWLRESGMAHAVEQARQRKVPLL 329


>sp|B5XUV5|COBQ_KLEP3 Cobyric acid synthase OS=Klebsiella pneumoniae (strain 342) GN=cobQ
           PE=3 SV=1
          Length = 507

 Score = 33.9 bits (76), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 136 PESLVKLDVVVLEGDFNNEDDDNWTQEEFVSHVVKE-REGKRPLL 179
           P++L   D+V+L G  N   D  W +E  ++H V++ R+ K PLL
Sbjct: 285 PQALADADLVILPGSKNTLGDLCWLRESGMAHAVEQARQRKVPLL 329


>sp|Q47XJ9|MNMC_COLP3 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
           protein MnmC OS=Colwellia psychrerythraea (strain 34H /
           ATCC BAA-681) GN=mnmC PE=3 SV=1
          Length = 682

 Score = 32.7 bits (73), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 245 YKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRD-SQRLRNILGSGM 303
           Y   + PA N ++W  +   + G   K       FTV  F++  +RD   RL  +L  G 
Sbjct: 180 YLDGFTPAKNPDMWSKDLFSQIGRLSKDQATLTTFTVAGFVKRQLRDIGFRLEKLLAKGK 239

Query: 304 SNKMWDVLVDHAKTCVLSGKLYVYYP--DDPRNVGVVFNNIYEFCGLIA 350
             +M   ++   ++  ++ K Y   P    P++V ++   I   C   A
Sbjct: 240 KKEMLSAVM---QSNPITNKGYYLRPLITKPQHVSIIGGGIASACAAYA 285


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,697,181
Number of Sequences: 539616
Number of extensions: 11438830
Number of successful extensions: 30792
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 30778
Number of HSP's gapped (non-prelim): 39
length of query: 628
length of database: 191,569,459
effective HSP length: 124
effective length of query: 504
effective length of database: 124,657,075
effective search space: 62827165800
effective search space used: 62827165800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)