Query 006876
Match_columns 627
No_of_seqs 204 out of 1760
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0681 Actin-related protein 100.0 1.6E-97 4E-102 793.2 36.9 540 1-626 97-643 (645)
2 KOG0676 Actin and related prot 100.0 9.5E-68 2.1E-72 560.6 18.1 291 1-623 81-372 (372)
3 PTZ00452 actin; Provisional 100.0 6E-67 1.3E-71 564.3 23.8 293 1-623 82-375 (375)
4 PTZ00466 actin-like protein; P 100.0 1.1E-65 2.3E-70 555.4 24.3 292 1-623 89-380 (380)
5 PTZ00281 actin; Provisional 100.0 1.4E-64 3.1E-69 546.1 22.1 293 1-623 83-376 (376)
6 PTZ00004 actin-2; Provisional 100.0 4.9E-63 1.1E-67 534.4 22.2 294 1-623 83-378 (378)
7 PTZ00280 Actin-related protein 100.0 3.7E-61 7.9E-66 525.6 24.6 302 1-626 84-413 (414)
8 KOG0677 Actin-related protein 100.0 3E-60 6.5E-65 470.4 18.3 291 1-621 83-386 (389)
9 PF00022 Actin: Actin; InterP 100.0 8.7E-58 1.9E-62 493.6 18.8 292 1-623 76-393 (393)
10 KOG0680 Actin-related protein 100.0 1.9E-56 4.2E-61 454.3 21.1 318 3-623 76-399 (400)
11 smart00268 ACTIN Actin. ACTIN 100.0 7.2E-56 1.6E-60 476.4 22.4 296 1-623 77-373 (373)
12 KOG0679 Actin-related protein 100.0 2.4E-54 5.1E-59 448.3 22.8 321 1-622 88-425 (426)
13 cd00012 ACTIN Actin; An ubiqui 100.0 2E-53 4.4E-58 457.3 22.8 292 1-621 77-371 (371)
14 COG5277 Actin and related prot 100.0 1.6E-52 3.5E-57 457.7 24.3 309 1-623 86-444 (444)
15 KOG0678 Actin-related protein 100.0 3.5E-44 7.7E-49 365.4 12.6 302 1-621 88-408 (415)
16 KOG0797 Actin-related protein 100.0 4.5E-29 9.9E-34 266.7 15.5 142 1-147 206-354 (618)
17 PRK13930 rod shape-determining 99.9 2.1E-23 4.6E-28 221.4 10.4 141 1-147 81-221 (335)
18 PRK13929 rod-share determining 99.9 8.4E-22 1.8E-26 210.2 11.8 138 1-147 77-219 (335)
19 TIGR00904 mreB cell shape dete 99.9 1E-21 2.3E-26 208.9 12.0 139 1-147 79-219 (333)
20 PRK13927 rod shape-determining 99.8 1.8E-21 3.8E-26 206.9 9.3 137 1-146 78-216 (334)
21 PRK13928 rod shape-determining 99.7 2.6E-18 5.6E-23 183.2 9.4 138 1-145 76-214 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.5 6.4E-14 1.4E-18 148.8 10.3 137 2-145 75-212 (326)
23 TIGR02529 EutJ ethanolamine ut 98.8 8.5E-08 1.8E-12 98.2 15.7 118 2-140 43-164 (239)
24 PRK15080 ethanolamine utilizat 98.5 3E-06 6.6E-11 88.2 15.9 89 22-118 90-178 (267)
25 COG1077 MreB Actin-like ATPase 98.4 4.6E-06 1E-10 87.6 13.6 121 20-146 101-221 (342)
26 TIGR01174 ftsA cell division p 98.3 3.7E-06 8E-11 91.2 11.9 102 32-145 156-257 (371)
27 TIGR01991 HscA Fe-S protein as 98.3 1.8E-06 3.9E-11 99.6 9.3 99 21-120 130-231 (599)
28 CHL00094 dnaK heat shock prote 98.3 1.4E-05 3.1E-10 92.6 16.6 99 21-120 136-237 (621)
29 PRK01433 hscA chaperone protei 98.3 1.8E-05 3.9E-10 91.2 17.0 100 21-121 142-244 (595)
30 PTZ00400 DnaK-type molecular c 98.2 3E-05 6.6E-10 90.5 17.7 99 21-120 175-276 (663)
31 PRK09472 ftsA cell division pr 98.2 1.1E-05 2.3E-10 89.3 13.3 101 32-144 164-264 (420)
32 TIGR02350 prok_dnaK chaperone 98.2 1.7E-05 3.6E-10 91.5 14.8 99 21-120 131-233 (595)
33 PRK00290 dnaK molecular chaper 98.2 2.1E-05 4.5E-10 91.3 15.5 99 21-120 134-235 (627)
34 PRK05183 hscA chaperone protei 98.2 1.2E-05 2.7E-10 93.0 13.0 100 21-121 150-252 (616)
35 PRK13410 molecular chaperone D 98.2 2.1E-05 4.7E-10 91.7 14.6 99 21-120 136-237 (668)
36 PTZ00186 heat shock 70 kDa pre 98.1 5.3E-05 1.2E-09 88.3 15.0 99 21-120 161-262 (657)
37 PRK13411 molecular chaperone D 98.0 5.6E-05 1.2E-09 88.2 14.3 99 21-120 134-236 (653)
38 PLN03184 chloroplast Hsp70; Pr 98.0 9.5E-05 2E-09 86.6 16.1 99 21-120 173-274 (673)
39 PTZ00009 heat shock 70 kDa pro 97.9 0.0001 2.2E-09 86.1 14.5 99 21-120 141-244 (653)
40 PF00012 HSP70: Hsp70 protein; 96.3 0.013 2.7E-07 67.5 9.2 99 21-120 136-238 (602)
41 COG0849 ftsA Cell division ATP 96.1 0.02 4.3E-07 63.5 8.9 93 42-145 172-264 (418)
42 COG0443 DnaK Molecular chapero 96.1 0.035 7.7E-07 64.1 11.0 101 20-121 120-223 (579)
43 TIGR03739 PRTRC_D PRTRC system 95.9 0.021 4.6E-07 61.0 7.5 100 23-122 104-216 (320)
44 PRK13917 plasmid segregation p 95.3 0.043 9.2E-07 59.4 7.3 91 47-139 151-249 (344)
45 PRK11678 putative chaperone; P 95.3 0.17 3.6E-06 56.9 12.1 93 21-115 150-260 (450)
46 TIGR01175 pilM type IV pilus a 95.0 0.22 4.9E-06 53.3 11.8 107 22-144 134-248 (348)
47 PF11104 PilM_2: Type IV pilus 91.0 1.3 2.8E-05 47.7 9.9 108 19-141 124-237 (340)
48 PF06406 StbA: StbA protein; 90.3 0.51 1.1E-05 50.5 6.0 114 5-120 82-212 (318)
49 COG4972 PilM Tfp pilus assembl 89.3 0.96 2.1E-05 48.5 6.9 68 75-154 195-262 (354)
50 COG4820 EutJ Ethanolamine util 88.5 0.19 4.1E-06 50.3 1.0 64 43-113 115-178 (277)
51 TIGR02261 benz_CoA_red_D benzo 85.5 0.42 9.2E-06 49.9 1.7 50 543-595 213-262 (262)
52 PRK10719 eutA reactivating fac 84.4 1.2 2.5E-05 50.2 4.5 39 72-112 145-183 (475)
53 TIGR03286 methan_mark_15 putat 84.3 0.41 8.9E-06 52.8 1.0 49 540-596 354-402 (404)
54 TIGR02259 benz_CoA_red_A benzo 83.8 0.66 1.4E-05 51.1 2.2 53 540-595 380-432 (432)
55 TIGR03192 benz_CoA_bzdQ benzoy 82.5 0.47 1E-05 50.3 0.5 49 540-596 238-287 (293)
56 PRK13317 pantothenate kinase; 82.4 0.57 1.2E-05 49.4 1.1 73 517-596 200-273 (277)
57 PF00012 HSP70: Hsp70 protein; 78.2 0.71 1.5E-05 53.2 0.1 84 491-596 291-375 (602)
58 TIGR00241 CoA_E_activ CoA-subs 76.9 1.5 3.2E-05 45.1 2.0 43 544-594 206-248 (248)
59 PF14450 FtsA: Cell division p 74.0 11 0.00024 34.3 6.8 59 76-145 2-71 (120)
60 KOG0104 Molecular chaperones G 73.6 9.3 0.0002 45.1 7.4 99 22-121 160-276 (902)
61 PF02541 Ppx-GppA: Ppx/GppA ph 73.1 12 0.00026 39.1 7.7 91 20-114 58-151 (285)
62 COG1924 Activator of 2-hydroxy 72.4 1.6 3.5E-05 47.6 0.9 44 545-596 346-389 (396)
63 COG0849 ftsA Cell division ATP 66.5 2.6 5.5E-05 47.1 1.0 59 539-597 318-380 (418)
64 KOG0101 Molecular chaperones H 66.2 21 0.00046 41.7 8.3 99 20-119 143-246 (620)
65 PF11104 PilM_2: Type IV pilus 65.2 4 8.6E-05 43.9 2.2 26 541-566 274-299 (340)
66 PF01968 Hydantoinase_A: Hydan 60.6 7.9 0.00017 41.0 3.4 26 72-97 76-101 (290)
67 PRK11678 putative chaperone; P 58.8 3.3 7.2E-05 46.6 0.2 46 543-596 401-446 (450)
68 COG1548 Predicted transcriptio 56.4 6.8 0.00015 40.9 1.9 23 72-94 129-151 (330)
69 KOG0103 Molecular chaperones H 56.1 33 0.00071 40.4 7.4 101 20-121 137-247 (727)
70 PF01869 BcrAD_BadFG: BadF/Bad 51.9 2.9 6.3E-05 43.2 -1.6 66 519-595 206-271 (271)
71 TIGR01175 pilM type IV pilus a 51.4 10 0.00022 40.6 2.4 26 541-566 282-307 (348)
72 TIGR03123 one_C_unchar_1 proba 48.0 16 0.00036 39.3 3.3 80 19-98 53-153 (318)
73 TIGR01837 PHA_granule_1 poly(h 46.6 2.1E+02 0.0045 26.3 9.9 39 229-267 74-115 (118)
74 PF08841 DDR: Diol dehydratase 45.1 1E+02 0.0023 32.9 8.4 102 32-144 93-196 (332)
75 PRK11031 guanosine pentaphosph 44.3 66 0.0014 36.8 7.6 88 24-114 81-171 (496)
76 TIGR03706 exo_poly_only exopol 39.8 52 0.0011 34.8 5.5 90 20-114 72-164 (300)
77 PRK13917 plasmid segregation p 34.3 15 0.00032 39.9 0.4 44 542-596 292-335 (344)
78 COG4820 EutJ Ethanolamine util 33.7 34 0.00073 34.8 2.7 41 542-590 227-267 (277)
79 KOG1029 Endocytic adaptor prot 31.2 1.1E+03 0.023 29.0 14.8 120 186-460 343-462 (1118)
80 PRK10854 exopolyphosphatase; P 30.9 98 0.0021 35.5 6.3 86 25-113 87-175 (513)
81 KOG0994 Extracellular matrix g 30.7 1.3E+03 0.028 29.8 15.6 185 184-461 1558-1743(1758)
82 KOG0100 Molecular chaperones G 30.5 1.2E+02 0.0026 34.0 6.3 96 22-118 174-273 (663)
83 PF07946 DUF1682: Protein of u 30.3 1.7E+02 0.0037 31.5 7.6 9 58-66 67-75 (321)
84 KOG0100 Molecular chaperones G 29.4 27 0.00058 38.8 1.3 56 534-596 355-410 (663)
85 KOG4691 Uncharacterized conser 28.7 3.8E+02 0.0082 27.1 8.9 69 191-259 118-186 (227)
86 PRK05082 N-acetylmannosamine k 28.4 50 0.0011 34.4 3.2 66 519-595 221-286 (291)
87 PF06277 EutA: Ethanolamine ut 28.2 1.8E+02 0.0039 33.2 7.5 103 5-110 69-178 (473)
88 PTZ00266 NIMA-related protein 28.1 8.3E+02 0.018 30.8 13.7 9 75-83 181-189 (1021)
89 KOG0681 Actin-related protein 26.0 4E+02 0.0086 31.1 9.6 211 189-466 282-496 (645)
90 COG0248 GppA Exopolyphosphatas 25.8 94 0.002 35.6 4.9 84 29-114 83-168 (492)
91 KOG0102 Molecular chaperones m 25.4 2.4E+02 0.0053 32.8 7.8 119 21-140 161-285 (640)
92 PF14048 MBD_C: C-terminal dom 25.1 91 0.002 27.8 3.6 24 182-205 73-96 (96)
93 PTZ00121 MAEBL; Provisional 24.3 1.7E+03 0.036 29.6 14.9 15 198-212 1138-1152(2084)
94 PTZ00121 MAEBL; Provisional 23.1 1.9E+03 0.04 29.2 15.5 15 72-86 997-1011(2084)
95 PRK09698 D-allose kinase; Prov 22.1 77 0.0017 33.1 3.1 54 543-596 238-295 (302)
96 PRK13310 N-acetyl-D-glucosamin 22.1 65 0.0014 33.8 2.5 67 519-595 233-300 (303)
97 PF05597 Phasin: Poly(hydroxya 21.8 6.8E+02 0.015 23.6 9.8 36 231-266 89-127 (132)
98 TIGR00555 panK_eukar pantothen 21.5 47 0.001 35.2 1.3 69 517-592 208-277 (279)
99 PRK09557 fructokinase; Reviewe 21.2 83 0.0018 33.0 3.1 53 543-595 246-299 (301)
100 TIGR03739 PRTRC_D PRTRC system 21.0 48 0.001 35.3 1.3 45 542-595 274-318 (320)
101 PF11239 DUF3040: Protein of u 20.4 64 0.0014 27.6 1.7 25 444-468 4-28 (82)
No 1
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1.6e-97 Score=793.18 Aligned_cols=540 Identities=43% Similarity=0.696 Sum_probs=477.1
Q ss_pred CHHHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876 1 MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP 80 (627)
Q Consensus 1 mE~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi 80 (627)
||.|+||+|.+||++....+|||+|||+.+||...|..|+|+|||+||||+|.++.++++|+|.+-.. ....+|+||++
T Consensus 97 ~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~-~~~~~~liis~ 175 (645)
T KOG0681|consen 97 MEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGK-SSNKSGLIISM 175 (645)
T ss_pred HHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCc-ccCcceEEEec
Confidence 69999999999999932379999999999999999999999999999999999999999999954311 11338999999
Q ss_pred CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCch
Q 006876 81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTK 160 (627)
Q Consensus 81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~~ 160 (627)
||++|||+||++|.++...++|+|+||.+++.||.+||+.+||.|...+++..++.+++.|||||.||.+|+.+|.. .+
T Consensus 176 g~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~-~d 254 (645)
T KOG0681|consen 176 GHSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE-MD 254 (645)
T ss_pred CCCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh-hh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHHH
Q 006876 161 EAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240 (627)
Q Consensus 161 ~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~ 240 (627)
+++.+.+++|+||++++... |+.+.||+|++ +|||+++.-||.+|+.+.|++-
T Consensus 255 ~~d~~~~~~qlP~~evl~~~-----e~~l~Ae~kqe--kRlq~~a~lkrv~k~~~re~~r-------------------- 307 (645)
T KOG0681|consen 255 YYDENRNYFQLPYTEVLAEV-----ELALTAEKKQE--KRLQEQAALKRVEKINARENRR-------------------- 307 (645)
T ss_pred hhhccceEEecccccccchh-----hhhccHHHHHH--HHHHHHHHHhhHHHHHHHHhhh--------------------
Confidence 99999999999999975433 59999999998 9999999999999999998732
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhHH
Q 006876 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGR 320 (627)
Q Consensus 241 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~r 320 (627)
+++++|+++ ++++ +.+++ +.| -+.+|+|++|| ..|+++|||+||+|++||+++++|
T Consensus 308 -------edeqql~~~-~kaq-----------~e~e~--~~D--~~q~~~ll~v~-~eL~~d~lk~k~~qr~lkas~dar 363 (645)
T KOG0681|consen 308 -------EDEQQLESY-NKAQ-----------GEQES--NLD--LEQKFPLLNVP-AELDEDQLKEKKKQRILKASTDAR 363 (645)
T ss_pred -------hhHHHHHHH-HHhh-----------hchhc--Ccc--Hhhhchhhcch-hhhCHHHHHHHHHHHHHHhhhhhh
Confidence 355666666 3222 11110 122 24799999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHH
Q 006876 321 QRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQR 400 (627)
Q Consensus 321 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~~ 400 (627)
.++|.+|+.||+. ++++++.+|+.+|++++|.+++.|++++++++++++++ ++|+|.++|
T Consensus 364 ~rar~eke~Er~~------k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~--------------~~r~s~~Sq 423 (645)
T KOG0681|consen 364 LRARVEKELERLN------KLEEEREENLISWLEELREKLEKLLERISQKKRLKQEL--------------KDRKSHASQ 423 (645)
T ss_pred ccccccchHHHhh------cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hhhhhhhhH
Confidence 9999999655544 55567779999999999999999999999999999999 999999999
Q ss_pred HHHHhhhhhhcc---C----CCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 006876 401 ERMRLLTTAAFD---R----GKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGP 473 (627)
Q Consensus 401 ~rm~~~~~~~~~---~----~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~ 473 (627)
.||+.++.++.+ + +-..|.||++|+||+||.++ ++.-+.++.+|..|++.|.+|||.|+... ...
T Consensus 424 ~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~l-------ee~~~~~~~dl~~l~~~L~e~Dp~F~~~~-~~~ 495 (645)
T KOG0681|consen 424 LRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDL-------EEENKSILEDLKSLNHELLEFDPHFTQYV-EGT 495 (645)
T ss_pred hhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHh-------hhhhhhHHHHHHHHHHHHHhhCccccccc-ccc
Confidence 999999999977 2 12377899999999999555 23334477899999999999999999875 112
Q ss_pred CCccccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCC
Q 006876 474 TQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCL 553 (627)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ 553 (627)
.+|++...+. ++++.+++++|.||++|||++|+|+++|.+++||.+++..++.++ |-+.+..|.+||+||||+|+
T Consensus 496 ~d~~~~~~p~--~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~---p~~eq~~lV~nVllTGG~s~ 570 (645)
T KOG0681|consen 496 TDPRNGVLPG--FTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRY---PHDEQEKLVSNVLLTGGCSQ 570 (645)
T ss_pred cCcccCcchh--HHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhC---chhhhHhhhhheEeeccccc
Confidence 2344442222 258899999999999999999999999999999999999999987 89999999999999999999
Q ss_pred CcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhccCcC
Q 006876 554 FPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQLQYT 626 (627)
Q Consensus 554 ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~~~~ 626 (627)
+||+.+||.+||..+.|.+.+|+|+.+.||.++||.||+.+|.-.+|..-||||+||+|+|+.+++.|+++|+
T Consensus 571 ~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~~~n~ 643 (645)
T KOG0681|consen 571 LPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHVASNI 643 (645)
T ss_pred CcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=9.5e-68 Score=560.58 Aligned_cols=291 Identities=34% Similarity=0.599 Sum_probs=268.3
Q ss_pred CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
||.||+|+| +.|++. |.+|||||||++++|+.+|++|+|+|||.|+||++++..++++ |++| ++||||||
T Consensus 81 me~iw~~if~~~L~~~--Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g-----~ttG~VvD 151 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVA--PEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASG-----RTTGLVVD 151 (372)
T ss_pred HHHHHHHHHHHhhccC--cccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcC-----CeeEEEEE
Confidence 689999999 589999 8899999999999999999999999999999999999887777 9999 99999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT 159 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~ 159 (627)
+|++.||+|||++|+++++++.++++||+++|+||+..|..+++++......+++++|||++|||+.||.+|+.. ...
T Consensus 152 ~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~-~~~- 229 (372)
T KOG0676|consen 152 SGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEET-ANT- 229 (372)
T ss_pred cCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhc-ccc-
Confidence 999999999999999999999999999999999999999998888888889999999999999999999999865 210
Q ss_pred hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876 160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239 (627)
Q Consensus 160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 239 (627)
. +
T Consensus 230 --------------------~--~-------------------------------------------------------- 231 (372)
T KOG0676|consen 230 --------------------S--S-------------------------------------------------------- 231 (372)
T ss_pred --------------------c--c--------------------------------------------------------
Confidence 0 0
Q ss_pred HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG 319 (627)
Q Consensus 240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~ 319 (627)
+-+.+|.| ||
T Consensus 232 --------------------------------------------~l~~~y~l---PD----------------------- 241 (372)
T KOG0676|consen 232 --------------------------------------------SLESSYEL---PD----------------------- 241 (372)
T ss_pred --------------------------------------------cccccccC---CC-----------------------
Confidence 00112332 22
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876 320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 399 (627)
Q Consensus 320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 399 (627)
T Consensus 242 -------------------------------------------------------------------------------- 241 (372)
T KOG0676|consen 242 -------------------------------------------------------------------------------- 241 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876 400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479 (627)
Q Consensus 400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~ 479 (627)
T Consensus 242 -------------------------------------------------------------------------------- 241 (372)
T KOG0676|consen 242 -------------------------------------------------------------------------------- 241 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE 559 (627)
Q Consensus 480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e 559 (627)
++.|.+++|||+|||+||+|+++|.+.+||++++.+||.+ ||+|+|+.||+||||+||+|++|||.+
T Consensus 242 ----------g~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~k---cd~dlrk~L~~nivLsGGtT~~pGl~~ 308 (372)
T KOG0676|consen 242 ----------GQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMK---CDIDLRKDLYENIVLSGGTTMFPGLAD 308 (372)
T ss_pred ----------CCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHh---CChhHhHHHHhheEEeCCcccchhHHH
Confidence 3569999999999999999999999999999999999995 699999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876 560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623 (627)
Q Consensus 560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~ 623 (627)
||++||+.+.|...+++|+++|++.+++|+||||+||+++|+++||||+||+|+|+++++++||
T Consensus 309 Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 309 RLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred HHHHHHhhcCCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 3
>PTZ00452 actin; Provisional
Probab=100.00 E-value=6e-67 Score=564.31 Aligned_cols=293 Identities=30% Similarity=0.513 Sum_probs=268.0
Q ss_pred CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
||.||+|+|. .|+++ |.+|||||||++++|+..|++|+|+|||+|+||+++++++++||+|++| ++||||||
T Consensus 82 ~e~iw~~~f~~~l~v~--p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g-----~~tglVVD 154 (375)
T PTZ00452 82 IEIIWHHAFYNELCMS--PEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG-----KTIGLVVD 154 (375)
T ss_pred HHHHHHHHHHhhcCCC--cccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC-----Cceeeeec
Confidence 6899999984 79998 8999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT 159 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~ 159 (627)
+|++.|+|+||++|+++++++.++++||+++|+||.++|..+++.+....+..++++|||++|||+.||..++..+...
T Consensus 155 iG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~- 233 (375)
T PTZ00452 155 SGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKES- 233 (375)
T ss_pred CCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhcc-
Confidence 9999999999999999999999999999999999999999888877665577899999999999999988776432110
Q ss_pred hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876 160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239 (627)
Q Consensus 160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 239 (627)
T Consensus 234 -------------------------------------------------------------------------------- 233 (375)
T PTZ00452 234 -------------------------------------------------------------------------------- 233 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG 319 (627)
Q Consensus 240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~ 319 (627)
+.....|.| ||
T Consensus 234 -------------------------------------------~~~~~~y~L---PD----------------------- 244 (375)
T PTZ00452 234 -------------------------------------------NSQDSPYKL---PD----------------------- 244 (375)
T ss_pred -------------------------------------------CCcCceEEC---CC-----------------------
Confidence 000012332 22
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876 320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 399 (627)
Q Consensus 320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 399 (627)
T Consensus 245 -------------------------------------------------------------------------------- 244 (375)
T PTZ00452 245 -------------------------------------------------------------------------------- 244 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876 400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479 (627)
Q Consensus 400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~ 479 (627)
T Consensus 245 -------------------------------------------------------------------------------- 244 (375)
T PTZ00452 245 -------------------------------------------------------------------------------- 244 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE 559 (627)
Q Consensus 480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e 559 (627)
++.|.++.|||.|||+||+|+++|.+..||+++|.+||.+ ||+|+|+.|++||||+||+|+||||.+
T Consensus 245 ----------g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~---c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 311 (375)
T PTZ00452 245 ----------GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKK---CDLDLRQELCRNIVLSGGTTLFPGIAN 311 (375)
T ss_pred ----------CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHh---CCHhHHHHhhccEEEecccccccCHHH
Confidence 4789999999999999999999999999999999999995 799999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876 560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623 (627)
Q Consensus 560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~ 623 (627)
||++||+.++|...+++|+.+++|.+++|+||||+|++++|+++||||+||+|+|++++++||+
T Consensus 312 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 312 RLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred HHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 9999999999998999999999999999999999999999999999999999999999999885
No 4
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.1e-65 Score=555.36 Aligned_cols=292 Identities=31% Similarity=0.509 Sum_probs=267.3
Q ss_pred CHHHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876 1 MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP 80 (627)
Q Consensus 1 mE~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi 80 (627)
||.||+|+|++|+++ |.++||||||++++|+..|++|+|+|||.|+||+++++.+++||+||+| .+||||||+
T Consensus 89 ~e~iw~~~f~~l~v~--~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g-----~~tglVVD~ 161 (380)
T PTZ00466 89 MENIWIHVYNSMKIN--SEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG-----KTNGTVLDC 161 (380)
T ss_pred HHHHHHHHHhhcccC--CccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC-----CceEEEEeC
Confidence 689999999989999 7999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCch
Q 006876 81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGTK 160 (627)
Q Consensus 81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~~ 160 (627)
|++.|+|+||++|+++.+++.++++||+++|+||+++|..++..+....+.+++++|||++|||+.||..++.....
T Consensus 162 G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~--- 238 (380)
T PTZ00466 162 GDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEK--- 238 (380)
T ss_pred CCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccc---
Confidence 99999999999999999999999999999999999999988776666667889999999999999998776532100
Q ss_pred hhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHHH
Q 006876 161 EAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAA 240 (627)
Q Consensus 161 ~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~ 240 (627)
.
T Consensus 239 -------------------~------------------------------------------------------------ 239 (380)
T PTZ00466 239 -------------------A------------------------------------------------------------ 239 (380)
T ss_pred -------------------c------------------------------------------------------------
Confidence 0
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhHH
Q 006876 241 FLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGR 320 (627)
Q Consensus 241 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~r 320 (627)
.....|.| ||
T Consensus 240 -------------------------------------------~~~~~y~L---Pd------------------------ 249 (380)
T PTZ00466 240 -------------------------------------------LTTLPYIL---PD------------------------ 249 (380)
T ss_pred -------------------------------------------ccceeEEC---CC------------------------
Confidence 00012322 22
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHH
Q 006876 321 QRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQR 400 (627)
Q Consensus 321 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~~ 400 (627)
T Consensus 250 -------------------------------------------------------------------------------- 249 (380)
T PTZ00466 250 -------------------------------------------------------------------------------- 249 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCccccC
Q 006876 401 ERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAEI 480 (627)
Q Consensus 401 ~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~~ 480 (627)
T Consensus 250 -------------------------------------------------------------------------------- 249 (380)
T PTZ00466 250 -------------------------------------------------------------------------------- 249 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHH
Q 006876 481 PRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSER 560 (627)
Q Consensus 481 ~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eR 560 (627)
+..|.++.|||+|||+||+|+++|.+..||+++|.+||.+ ||+|+|+.|++||||+||+|+||||.+|
T Consensus 250 ---------g~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~---c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 317 (380)
T PTZ00466 250 ---------GSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITR---ADMDLRRTLYSHIVLSGGTTMFHGFGDR 317 (380)
T ss_pred ---------CcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHh---CChhhHHHHhhcEEEeCCccccCCHHHH
Confidence 4689999999999999999999999999999999999995 7999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876 561 LEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623 (627)
Q Consensus 561 L~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~ 623 (627)
|++||+.+.|...+++|+.+++|.+++|+|||++|++++|+++||||+||+|+|+++|++|++
T Consensus 318 L~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 318 LLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred HHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.4e-64 Score=546.08 Aligned_cols=293 Identities=30% Similarity=0.568 Sum_probs=266.9
Q ss_pred CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
||.||+|+| ++|+++ |.++|||||||+++|+..|++|+|+|||.|+||+++++++++||+|++| ++||||||
T Consensus 83 ~e~l~~~~f~~~l~v~--p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g-----~~tglVVD 155 (376)
T PTZ00281 83 MEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVMD 155 (376)
T ss_pred HHHHHHHHHHhhccCC--CccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC-----CceEEEEE
Confidence 689999998 579999 8999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT 159 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~ 159 (627)
+|++.|+|+||++|+++.++++++++||+++|+||+++|..+++.+....+.+++++|||++|||+.||..+++.....
T Consensus 156 iG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~- 234 (376)
T PTZ00281 156 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASS- 234 (376)
T ss_pred CCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcC-
Confidence 9999999999999999999999999999999999999999988877666678899999999999999987766421110
Q ss_pred hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876 160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239 (627)
Q Consensus 160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 239 (627)
.
T Consensus 235 --------------------~----------------------------------------------------------- 235 (376)
T PTZ00281 235 --------------------S----------------------------------------------------------- 235 (376)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG 319 (627)
Q Consensus 240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~ 319 (627)
.....|.| ||
T Consensus 236 --------------------------------------------~~~~~y~L---Pd----------------------- 245 (376)
T PTZ00281 236 --------------------------------------------ALEKSYEL---PD----------------------- 245 (376)
T ss_pred --------------------------------------------ccceeEEC---CC-----------------------
Confidence 00012322 22
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876 320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 399 (627)
Q Consensus 320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 399 (627)
T Consensus 246 -------------------------------------------------------------------------------- 245 (376)
T PTZ00281 246 -------------------------------------------------------------------------------- 245 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876 400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479 (627)
Q Consensus 400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~ 479 (627)
T Consensus 246 -------------------------------------------------------------------------------- 245 (376)
T PTZ00281 246 -------------------------------------------------------------------------------- 245 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE 559 (627)
Q Consensus 480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e 559 (627)
++.|.++.|||.|||+||+|+++|.+.+||+++|.+||.+ ||+|+|+.|++||||+||+|+||||.+
T Consensus 246 ----------g~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~---~~~d~r~~L~~nIvl~GG~s~~~Gf~~ 312 (376)
T PTZ00281 246 ----------GQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMK---CDVDIRKDLYGNVVLSGGTTMFPGIAD 312 (376)
T ss_pred ----------CCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHh---CChhHHHHHHhhccccCccccCcCHHH
Confidence 4689999999999999999999999999999999999995 799999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876 560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623 (627)
Q Consensus 560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~ 623 (627)
||+.||+.++|...+++|+.+++|.+++|+|||++|++++|+++||||+||+|+|++++++||+
T Consensus 313 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 313 RMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred HHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 9999999999998899999999999999999999999999999999999999999999999875
No 6
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=4.9e-63 Score=534.38 Aligned_cols=294 Identities=31% Similarity=0.537 Sum_probs=266.2
Q ss_pred CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
||.||+|+|. +|+++ |.++|||||+++++|+..|++++|+|||.|+||++++++++++|+|++| .+||||||
T Consensus 83 ~e~i~~~~~~~~l~v~--~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g-----~~tglVVD 155 (378)
T PTZ00004 83 MEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG-----RTTGIVLD 155 (378)
T ss_pred HHHHHHHHHHhhcccC--CccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC-----CceEEEEE
Confidence 5899999984 79998 7999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT 159 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~ 159 (627)
+|++.|+|+||++|+++.++++++++||+++|+||+++|..+++.+....+..++++|||++|||+.||.+++......
T Consensus 156 iG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~- 234 (378)
T PTZ00004 156 SGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGS- 234 (378)
T ss_pred CCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcC-
Confidence 9999999999999999999999999999999999999999988876555567899999999999999988776421110
Q ss_pred hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876 160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239 (627)
Q Consensus 160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 239 (627)
.
T Consensus 235 --------------------~----------------------------------------------------------- 235 (378)
T PTZ00004 235 --------------------S----------------------------------------------------------- 235 (378)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG 319 (627)
Q Consensus 240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~ 319 (627)
+.-...|.| ||
T Consensus 236 -------------------------------------------~~~~~~y~l---Pd----------------------- 246 (378)
T PTZ00004 236 -------------------------------------------DKYEESYEL---PD----------------------- 246 (378)
T ss_pred -------------------------------------------cccceEEEC---CC-----------------------
Confidence 000012222 22
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876 320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 399 (627)
Q Consensus 320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 399 (627)
T Consensus 247 -------------------------------------------------------------------------------- 246 (378)
T PTZ00004 247 -------------------------------------------------------------------------------- 246 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876 400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479 (627)
Q Consensus 400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~ 479 (627)
T Consensus 247 -------------------------------------------------------------------------------- 246 (378)
T PTZ00004 247 -------------------------------------------------------------------------------- 246 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCC-CCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChH
Q 006876 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMS 558 (627)
Q Consensus 480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~-~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~ 558 (627)
+..|+++.|||.|||+||+|+++|.+ ..||+++|.+||.+ ||+|+|+.|++||||+||+|+||||.
T Consensus 247 ----------g~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~---~~~d~r~~L~~nIvl~GG~s~~~Gf~ 313 (378)
T PTZ00004 247 ----------GTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINK---CDIDIRKDLYGNIVLSGGTTMYRGLP 313 (378)
T ss_pred ----------CCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHh---CChhHHHHHHhhEEeccchhcCcCHH
Confidence 46899999999999999999999998 99999999999995 79999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876 559 ERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623 (627)
Q Consensus 559 eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~ 623 (627)
+||+.||+.++|...+++|+.+++|.+++|+|||++|++++|+++||||+||+|+|++++++||+
T Consensus 314 ~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 314 ERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred HHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 99999999999998899999999999999999999999999999999999999999999999875
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=3.7e-61 Score=525.55 Aligned_cols=302 Identities=25% Similarity=0.412 Sum_probs=263.5
Q ss_pred CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhc----------cccC
Q 006876 1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYN----------QQYG 69 (627)
Q Consensus 1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~----------G~~~ 69 (627)
||.||+|+| +.|+++ |.+||||||||+++|...|++++|+|||.|+||+++++.+++||+||+ |
T Consensus 84 ~e~l~~~~~~~~L~~~--p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g--- 158 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCE--PEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG--- 158 (414)
T ss_pred HHHHHHHHHHHhhccC--CCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC---
Confidence 689999998 579998 789999999999999999999999999999999999999999999998 7
Q ss_pred ccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHH
Q 006876 70 ICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYF 149 (627)
Q Consensus 70 ~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~ 149 (627)
.+||||||+|++.|+|+||++|+++.++++++++||+++|+||.++|..++..+......+++++|||++|||+.||.
T Consensus 159 --~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~ 236 (414)
T PTZ00280 159 --TLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIA 236 (414)
T ss_pred --ceeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHH
Confidence 899999999999999999999999999999999999999999999999988877655567899999999999999988
Q ss_pred HHHHHhhcCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 006876 150 SEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQ 229 (627)
Q Consensus 150 ~E~~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~ 229 (627)
++++.+... +.
T Consensus 237 ~e~~~~~~~--------------------~~------------------------------------------------- 247 (414)
T PTZ00280 237 KEFEKYDSD--------------------PK------------------------------------------------- 247 (414)
T ss_pred HHHHHhhcC--------------------cc-------------------------------------------------
Confidence 877543110 00
Q ss_pred HhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHH
Q 006876 230 LEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRR 309 (627)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~ 309 (627)
.....|.+ ||.
T Consensus 248 ------------------------------------------------------~~~~~~~~---~d~------------ 258 (414)
T PTZ00280 248 ------------------------------------------------------NHFKKYTA---VNS------------ 258 (414)
T ss_pred ------------------------------------------------------cccceEEC---CCC------------
Confidence 00011222 110
Q ss_pred HhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 006876 310 QIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGV 389 (627)
Q Consensus 310 q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 389 (627)
T Consensus 259 -------------------------------------------------------------------------------- 258 (414)
T PTZ00280 259 -------------------------------------------------------------------------------- 258 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccHHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCC
Q 006876 390 GRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQ 469 (627)
Q Consensus 390 ~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~ 469 (627)
T Consensus 259 -------------------------------------------------------------------------------- 258 (414)
T PTZ00280 259 -------------------------------------------------------------------------------- 258 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCC-CCCccHHHHHhcccCCCCChhhHHhccCCeEEe
Q 006876 470 ESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGID-QVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMT 548 (627)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~-~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLt 548 (627)
.+...+.|.|+.|||.|||+||+|+++|.+ ..||+++|.+||.+ ||+|+|+.|++||||+
T Consensus 259 ----------------~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~---~~~d~r~~L~~nIvL~ 319 (414)
T PTZ00280 259 ----------------VTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQS---CPIDCRRPLYKNIVLS 319 (414)
T ss_pred ----------------CCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHh---CChhhHHHHhhcEEEe
Confidence 001135899999999999999999998766 45999999999995 6999999999999999
Q ss_pred cCCCCCcChHHHHHHHHHhhc----------------CCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhh
Q 006876 549 GGCCLFPGMSERLEAGIRMIR----------------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYE 612 (627)
Q Consensus 549 GG~s~ipGf~eRL~~EL~~l~----------------p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E 612 (627)
||+|+||||.+||++||+.++ |...+++|+.++++.+++|+|||+||++++|+++||||+||+|
T Consensus 320 GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E 399 (414)
T PTZ00280 320 GGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDE 399 (414)
T ss_pred CCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhc
Confidence 999999999999999999986 4466789999999999999999999999999999999999999
Q ss_pred hChhHHHHhccCcC
Q 006876 613 KGENWLRRYQLQYT 626 (627)
Q Consensus 613 ~G~~iv~~k~~~~~ 626 (627)
+|+++|+++.+..+
T Consensus 400 ~G~~i~~~~~~~~~ 413 (414)
T PTZ00280 400 YGPSICRYNNVFHS 413 (414)
T ss_pred cChHheeecccccC
Confidence 99999988755443
No 8
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=3e-60 Score=470.41 Aligned_cols=291 Identities=29% Similarity=0.460 Sum_probs=261.5
Q ss_pred CHHHHHHHH-hhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAF-DRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if-~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
|+++|||+| ++|.++ |.+++|||||||+||.++|++|+|+|||+|+|.++|+..|++|+|||.| ..||+|||
T Consensus 83 M~h~WDytF~ekl~id--p~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQG-----L~tGvVvD 155 (389)
T KOG0677|consen 83 MEHVWDYTFGEKLKID--PTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQG-----LLTGVVVD 155 (389)
T ss_pred HHHHHHhhhhhhccCC--CccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhc-----ccceEEEe
Confidence 789999998 589999 8999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT 159 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~ 159 (627)
+|.+.|||+||++|+++++-++|++++|+++|.||.+||..+++.|+...+.+.++.|||++|||+-|+..|.+.....
T Consensus 156 SGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalET- 234 (389)
T KOG0677|consen 156 SGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALET- 234 (389)
T ss_pred cCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhh-
Confidence 9999999999999999999999999999999999999999999999998999999999999999999877765431110
Q ss_pred hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876 160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239 (627)
Q Consensus 160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 239 (627)
T Consensus 235 -------------------------------------------------------------------------------- 234 (389)
T KOG0677|consen 235 -------------------------------------------------------------------------------- 234 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG 319 (627)
Q Consensus 240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~ 319 (627)
+. -..+|.| |
T Consensus 235 -----------------------------------------Tv--Lv~~YtL---P------------------------ 244 (389)
T KOG0677|consen 235 -----------------------------------------TV--LVESYTL---P------------------------ 244 (389)
T ss_pred -----------------------------------------ee--eeeeeec---C------------------------
Confidence 00 0013333 2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876 320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 399 (627)
Q Consensus 320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 399 (627)
T Consensus 245 -------------------------------------------------------------------------------- 244 (389)
T KOG0677|consen 245 -------------------------------------------------------------------------------- 244 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876 400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479 (627)
Q Consensus 400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~ 479 (627)
T Consensus 245 -------------------------------------------------------------------------------- 244 (389)
T KOG0677|consen 245 -------------------------------------------------------------------------------- 244 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE 559 (627)
Q Consensus 480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e 559 (627)
++..|.+|.|||.+||+||+|.+++.+.+|+.++++++|+. .|+|+|..||++|||+||+|+.||+..
T Consensus 245 ---------DGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQa---aDiD~R~~lYkhIVLSGGstMYPGLPS 312 (389)
T KOG0677|consen 245 ---------DGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQA---ADIDIRSELYKHIVLSGGSTMYPGLPS 312 (389)
T ss_pred ---------CCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHH---hccchHHHHHhHeeecCCcccCCCCcH
Confidence 25789999999999999999999999999999999999995 599999999999999999999999999
Q ss_pred HHHHHHHhhcC-----------CCCCeeEeeCCCCccceeeccccccCc-CCCCcccccHHHHhhhChhHHHHh
Q 006876 560 RLEAGIRMIRP-----------CGAPIKVVRALDPVLDAWRGASVYATK-LQFPQQTFSRMDYYEKGENWLRRY 621 (627)
Q Consensus 560 RL~~EL~~l~p-----------~~~~v~V~~~~~~~~saW~GgsilAsl-~~f~~~~ITk~eY~E~G~~iv~~k 621 (627)
||++||+.+.- ..++++|-.+|.|.+.+++||+++|++ ..-+.+|+||+||+|.|...+.+.
T Consensus 313 RLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 313 RLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 99999987531 235678888899999999999999984 456889999999999999998764
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=8.7e-58 Score=493.58 Aligned_cols=292 Identities=38% Similarity=0.597 Sum_probs=248.1
Q ss_pred CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
+|.||+|+|. .|+++ +.++|||||+|+++++..|++++++|||.|+||+|+++++++||+|++| .+||||||
T Consensus 76 ~e~i~~~~~~~~l~~~--~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~tglVVD 148 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVD--PSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASG-----RTTGLVVD 148 (393)
T ss_dssp HHHHHHHHHHTTT-SS--GGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTT-----BSSEEEEE
T ss_pred cccccccccccccccc--cccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccc-----cccccccc
Confidence 4889999996 58888 7999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCC-----------------CCcccHHHHHHHHHhcc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQH-----------------MTKLTWEKVEDLKMEHC 142 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~-----------------~~~~~~~~ve~IKE~~C 142 (627)
+|++.|+|+||++|+++.+++.++++||++++.||+++|..++..+ ....+..+++++|+.+|
T Consensus 149 ~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ 228 (393)
T PF00022_consen 149 IGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECC 228 (393)
T ss_dssp ESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHH
T ss_pred cceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhh
Confidence 9999999999999999999999999999999999999999863321 12235678999999999
Q ss_pred ccccCHHHHHHHhhcCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhh
Q 006876 143 YIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHG 222 (627)
Q Consensus 143 yVa~Dy~~E~~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~ 222 (627)
||+.++..+......
T Consensus 229 ~v~~~~~~~~~~~~~----------------------------------------------------------------- 243 (393)
T PF00022_consen 229 YVSEDPDEEQEEQAS----------------------------------------------------------------- 243 (393)
T ss_dssp SGGSSHHHHHHHHHC-----------------------------------------------------------------
T ss_pred hcccccccccccccc-----------------------------------------------------------------
Confidence 999886651100000
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHH
Q 006876 223 LEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLE 302 (627)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~e 302 (627)
+.....|.| ||
T Consensus 244 ------------------------------------------------------------~~~~~~~~l---Pd------ 254 (393)
T PF00022_consen 244 ------------------------------------------------------------ENPEKSYEL---PD------ 254 (393)
T ss_dssp ------------------------------------------------------------STTTEEEE----TT------
T ss_pred ------------------------------------------------------------cccceeccc---cc------
Confidence 000012222 22
Q ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 006876 303 QLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNG 382 (627)
Q Consensus 303 q~kekr~q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~ 382 (627)
T Consensus 255 -------------------------------------------------------------------------------- 254 (393)
T PF00022_consen 255 -------------------------------------------------------------------------------- 254 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcC
Q 006876 383 NNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVD 462 (627)
Q Consensus 383 ~~~~~~~~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d 462 (627)
T Consensus 255 -------------------------------------------------------------------------------- 254 (393)
T PF00022_consen 255 -------------------------------------------------------------------------------- 254 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCC-------CccHHHHHhcccCCCCCh
Q 006876 463 PTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQV-------GLDEMTGVSIRRLPTKDE 535 (627)
Q Consensus 463 p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~-------gL~e~I~~sI~~~~~c~~ 535 (627)
++.+.++.|||.+||+||+|+.+|.+.. ||+++|.+||.+ ||+
T Consensus 255 ---------------------------g~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~---~~~ 304 (393)
T PF00022_consen 255 ---------------------------GQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISK---CPI 304 (393)
T ss_dssp ---------------------------SSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHT---STT
T ss_pred ---------------------------ccccccccccccccccccccccccccccccccccchhhhhhhhhhhc---ccc
Confidence 4689999999999999999999999877 999999999995 699
Q ss_pred hhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCC-CCccceeeccccccCcCCCCcccccHHHHhhhC
Q 006876 536 DLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRAL-DPVLDAWRGASVYATKLQFPQQTFSRMDYYEKG 614 (627)
Q Consensus 536 d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~-~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G 614 (627)
|+|+.|++|||||||+|+||||.+||+.||..+.|...+++|+.++ +|.+++|+|||++|++++|+++||||+||+|+|
T Consensus 305 d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G 384 (393)
T PF00022_consen 305 DLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYG 384 (393)
T ss_dssp TTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHG
T ss_pred ccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhHHHHhcc
Q 006876 615 ENWLRRYQL 623 (627)
Q Consensus 615 ~~iv~~k~~ 623 (627)
+++++|||+
T Consensus 385 ~~~i~rkc~ 393 (393)
T PF00022_consen 385 PSIIHRKCF 393 (393)
T ss_dssp GGGHHHHT-
T ss_pred cceeeecCC
Confidence 999999986
No 10
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=1.9e-56 Score=454.33 Aligned_cols=318 Identities=30% Similarity=0.475 Sum_probs=271.7
Q ss_pred HHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhh-cccc--C---ccCcceE
Q 006876 3 YILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKY-NQQY--G---ICNKDGL 76 (627)
Q Consensus 3 ~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya-~G~~--~---~~~~tGL 76 (627)
.+|||+|...+.+....++.|++|+|.++-++..+.+.|+|||.|+|.+++-+..+.|+.+. +-.. . ....++|
T Consensus 76 ~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~l 155 (400)
T KOG0680|consen 76 QVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCL 155 (400)
T ss_pred HHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEE
Confidence 69999997655332268999999999999999999999999999999999999999998776 2100 0 1134899
Q ss_pred EEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhh
Q 006876 77 AICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQ 156 (627)
Q Consensus 77 VVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~ 156 (627)
|||+||+.|||+||+.|.++..+++|+++||+.||++|++++++|+.+++. +..++++|||.+||||+||.++|..+.
T Consensus 156 VIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~~~ 233 (400)
T KOG0680|consen 156 VIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDIAK 233 (400)
T ss_pred EEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999887 778999999999999999999998765
Q ss_pred cCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHH
Q 006876 157 KGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEEN 236 (627)
Q Consensus 157 ~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~ 236 (627)
.+.
T Consensus 234 ~k~----------------------------------------------------------------------------- 236 (400)
T KOG0680|consen 234 TKF----------------------------------------------------------------------------- 236 (400)
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 420
Q ss_pred HHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcc
Q 006876 237 DIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTT 316 (627)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~ 316 (627)
..++-...|.| ||...+ |
T Consensus 237 --------------------------------------------~~~~~~i~YvL---PDF~T~------k--------- 254 (400)
T KOG0680|consen 237 --------------------------------------------QENKVMIDYVL---PDFSTS------K--------- 254 (400)
T ss_pred --------------------------------------------ccceeEEEEec---CCcccc------c---------
Confidence 00112346877 886433 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 006876 317 TEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLN 396 (627)
Q Consensus 317 ~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s 396 (627)
- |.|.+
T Consensus 255 ---------------------------------~------------------------------------Gyvr~----- 260 (400)
T KOG0680|consen 255 ---------------------------------R------------------------------------GYVRN----- 260 (400)
T ss_pred ---------------------------------c------------------------------------eeEec-----
Confidence 0 01110
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCc
Q 006876 397 AAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQS 476 (627)
Q Consensus 397 ~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~ 476 (627)
.| . +
T Consensus 261 --------------------~~-----------------v-------------------------------k-------- 264 (400)
T KOG0680|consen 261 --------------------ED-----------------V-------------------------------K-------- 264 (400)
T ss_pred --------------------CC-----------------C-------------------------------C--------
Confidence 00 0 0
Q ss_pred cccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcC
Q 006876 477 AAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPG 556 (627)
Q Consensus 477 ~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipG 556 (627)
+..+.+.|+|++|||.+||+||+||.+|++++||+++|..||.. ||..+|+.|+.|||++||+++|||
T Consensus 265 ---------~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~---~Pe~~~p~l~~NIv~iGGn~~fPg 332 (400)
T KOG0680|consen 265 ---------LPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSM---LPEEVRPLLLENIVCIGGNSNFPG 332 (400)
T ss_pred ---------CCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHh---CHHHHHHHHHhcEEEecCccCCcc
Confidence 01123899999999999999999999999999999999999995 699999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876 557 MSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623 (627)
Q Consensus 557 f~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~ 623 (627)
|.+||..||+.++|.++.++|+.+.||..-+|.||+-+|.+++|..+||||+||+|+|++++.+|++
T Consensus 333 F~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 333 FRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGPSWCTKKRF 399 (400)
T ss_pred hHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCchhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876
No 11
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=7.2e-56 Score=476.40 Aligned_cols=296 Identities=34% Similarity=0.586 Sum_probs=263.2
Q ss_pred CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
+|.+|+|+|. .|+++ +.++|||||+|++++...|++++++|||.|+||+++++.++++++|++| .++|||||
T Consensus 77 ~e~i~~~~~~~~l~~~--~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVD 149 (373)
T smart00268 77 MEKIWDYTFFNELRVE--PEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG-----RTTGLVID 149 (373)
T ss_pred HHHHHHHHHhhhcCCC--CccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----CCEEEEEe
Confidence 5889999997 79998 7899999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT 159 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~ 159 (627)
+|++.|+|+||++|+++.++++++++||.+++++|.++|...+..+....+.++++.||+++|||+.++..+++.....
T Consensus 150 iG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~- 228 (373)
T smart00268 150 SGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARES- 228 (373)
T ss_pred cCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhc-
Confidence 9999999999999999999999999999999999999998855444444567899999999999999887766432110
Q ss_pred hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876 160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239 (627)
Q Consensus 160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 239 (627)
. .
T Consensus 229 -------------~------~----------------------------------------------------------- 230 (373)
T smart00268 229 -------------S------E----------------------------------------------------------- 230 (373)
T ss_pred -------------c------c-----------------------------------------------------------
Confidence 0 0
Q ss_pred HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG 319 (627)
Q Consensus 240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~ 319 (627)
.......|.| |
T Consensus 231 ------------------------------------------~~~~~~~~~l---p------------------------ 241 (373)
T smart00268 231 ------------------------------------------SSKLEKTYEL---P------------------------ 241 (373)
T ss_pred ------------------------------------------ccccceeEEC---C------------------------
Confidence 0000001111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876 320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 399 (627)
Q Consensus 320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 399 (627)
T Consensus 242 -------------------------------------------------------------------------------- 241 (373)
T smart00268 242 -------------------------------------------------------------------------------- 241 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876 400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479 (627)
Q Consensus 400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~ 479 (627)
T Consensus 242 -------------------------------------------------------------------------------- 241 (373)
T smart00268 242 -------------------------------------------------------------------------------- 241 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE 559 (627)
Q Consensus 480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e 559 (627)
++..+.++.|||.+||+||+|+++|.+..||+++|..+|.+ ||+|+|+.|++|||||||+|+||||.+
T Consensus 242 ---------dg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~---~~~d~r~~l~~nIvltGG~s~i~Gl~~ 309 (373)
T smart00268 242 ---------DGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQK---CDIDVRKDLYENIVLSGGSTLIPGFGE 309 (373)
T ss_pred ---------CCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHh---CCHhHHHHHHhCeEeecccccCcCHHH
Confidence 24678999999999999999999999999999999999995 699999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876 560 RLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623 (627)
Q Consensus 560 RL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~ 623 (627)
||++||+.+.|...+++|..+++|.+++|+|||++|++++|..+||||+||+|+|++++++|||
T Consensus 310 RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 310 RLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred HHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 9999999999988899999899999999999999999999999999999999999999999986
No 12
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2.4e-54 Score=448.33 Aligned_cols=321 Identities=26% Similarity=0.421 Sum_probs=242.6
Q ss_pred CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
++.+|+|+|. +|+++ |.+||+|||||++|++.+|++++|+|||.|+||+++++.+++++.||+| +.||||||
T Consensus 88 ~~~~w~~~~~~~Lk~~--p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-----rstalVvD 160 (426)
T KOG0679|consen 88 FEMQWRYAYKNQLKVN--PEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-----RSTALVVD 160 (426)
T ss_pred HHHHHHHHHhhhhhcC--ccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-----CCceEEEE
Confidence 3689999996 89999 8899999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT 159 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~ 159 (627)
||+..|+|+||+||+++.+++.+.++||..|+..++++|..++..+.. +..||.+-- |-.-|... |..
T Consensus 161 iGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P------~y~ia~k~~-v~~g~~an---~~~-- 228 (426)
T KOG0679|consen 161 IGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIP------MYNIASKEP-VREGYPAN---AVL-- 228 (426)
T ss_pred ecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCc------HHHhhhccc-ccccCcch---hhh--
Confidence 999999999999999999999999999999999999999988766543 123332211 11000000 000
Q ss_pred hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876 160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239 (627)
Q Consensus 160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 239 (627)
+.++ .|+ ..+ ....+.+.-..+++
T Consensus 229 ----------~~~~-----------~d~--------------------------------tes---~~~y~~~~v~~e~k 252 (426)
T KOG0679|consen 229 ----------RVSI-----------PDL--------------------------------TES---YHNYMEQRVYQEFK 252 (426)
T ss_pred ----------cCCh-----------hHH--------------------------------HHH---HHHHHHHHHHHHHH
Confidence 0000 000 000 00000000000000
Q ss_pred HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG 319 (627)
Q Consensus 240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~ 319 (627)
. .++.|+
T Consensus 253 e-------------------------------------------------~v~qv~------------------------ 259 (426)
T KOG0679|consen 253 E-------------------------------------------------SVLQVS------------------------ 259 (426)
T ss_pred H-------------------------------------------------HHHhcc------------------------
Confidence 0 000011
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876 320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 399 (627)
Q Consensus 320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 399 (627)
T Consensus 260 -------------------------------------------------------------------------------- 259 (426)
T KOG0679|consen 260 -------------------------------------------------------------------------------- 259 (426)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876 400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479 (627)
Q Consensus 400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~ 479 (627)
|-.|+... .+.
T Consensus 260 --------------------------------------------------------------dtp~de~~-------~~~ 270 (426)
T KOG0679|consen 260 --------------------------------------------------------------DTPFDEEV-------AAQ 270 (426)
T ss_pred --------------------------------------------------------------CCCCcccc-------ccc
Confidence 11121110 011
Q ss_pred CCCcCCCCCCCcEEEcCcccccccccCcCCCCCC------------CCCCCccHHHHHhcccCCCCChhhHHhccCCeEE
Q 006876 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVG------------IDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILM 547 (627)
Q Consensus 480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g------------~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvL 547 (627)
+++.+.+-..+++.++|.|||++||.||+|+++- ....|+++++..||. .||.|+|..|++||||
T Consensus 271 i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~~lv~sSi~---~cDvdiR~~L~~nViv 347 (426)
T KOG0679|consen 271 IPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLPHLVYSSIN---MCDVDIRSSLLGNVIV 347 (426)
T ss_pred CCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCchHHHHhhhc---cChHHHHHHhhccEEE
Confidence 1222222235679999999999999999999762 123599999999999 4799999999999999
Q ss_pred ecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCC---CCccceeeccccccCcCCCCcccccHHHHhhhCh-hHHHHhc
Q 006876 548 TGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRAL---DPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGE-NWLRRYQ 622 (627)
Q Consensus 548 tGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~---~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~-~iv~~k~ 622 (627)
|||+|+|+||.+||.+||....|.+ +++|++.. +|+|++|+||||||||++|+++||+|+||+|.|. ..+.++|
T Consensus 348 tGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 348 TGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred ecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 9999999999999999999999988 99999765 7999999999999999999999999999999999 7777766
No 13
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=2e-53 Score=457.31 Aligned_cols=292 Identities=35% Similarity=0.553 Sum_probs=259.0
Q ss_pred CHHHHHHHHh-hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFD-RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~-~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
+|.+|+|+|. .|.++ +.++||+|++|++++...|++++++|||.|++|+|++++++++|+|++| .+||||||
T Consensus 77 ~e~~~~~~~~~~l~~~--~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVD 149 (371)
T cd00012 77 MEKIWDHLFFNELKVN--PEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASG-----RTTGLVVD 149 (371)
T ss_pred HHHHHHHHHHHhcCCC--CCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcC-----CCeEEEEE
Confidence 4789999996 57777 6899999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhhcCc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQKGT 159 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~~~~ 159 (627)
+|++.|+|+||++|+++.+++.++++||++++++|.++|..+++.+....+...+++||+++|||+.++..++......
T Consensus 150 iG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~- 228 (371)
T cd00012 150 SGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKE- 228 (371)
T ss_pred CCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhcc-
Confidence 9999999999999999999999999999999999999999888766556678899999999999998877654210000
Q ss_pred hhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH
Q 006876 160 KEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA 239 (627)
Q Consensus 160 ~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~ 239 (627)
...
T Consensus 229 ------------------~~~----------------------------------------------------------- 231 (371)
T cd00012 229 ------------------TSL----------------------------------------------------------- 231 (371)
T ss_pred ------------------CCc-----------------------------------------------------------
Confidence 000
Q ss_pred HhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhH
Q 006876 240 AFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEG 319 (627)
Q Consensus 240 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~ 319 (627)
....|.| |
T Consensus 232 ---------------------------------------------~~~~~~l---p------------------------ 239 (371)
T cd00012 232 ---------------------------------------------LEKTYEL---P------------------------ 239 (371)
T ss_pred ---------------------------------------------cceeEEC---C------------------------
Confidence 0001111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHH
Q 006876 320 RQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQ 399 (627)
Q Consensus 320 r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~ 399 (627)
T Consensus 240 -------------------------------------------------------------------------------- 239 (371)
T cd00012 240 -------------------------------------------------------------------------------- 239 (371)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcccc
Q 006876 400 RERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQSAAE 479 (627)
Q Consensus 400 ~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~~~~ 479 (627)
T Consensus 240 -------------------------------------------------------------------------------- 239 (371)
T cd00012 240 -------------------------------------------------------------------------------- 239 (371)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHH
Q 006876 480 IPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSE 559 (627)
Q Consensus 480 ~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~e 559 (627)
.+..|.++.|||.+||+||+|+++|....||+++|..+|.. ||++.|+.+++||+||||+|+||||.+
T Consensus 240 ---------d~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~---~~~~~~~~l~~~Ivl~GG~s~~~gl~~ 307 (371)
T cd00012 240 ---------DGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINK---CDIDLRKDLYSNIVLSGGSTLFPGFGE 307 (371)
T ss_pred ---------CCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHh---CCHhHHHHHHhCEEEeCCccCCcCHHH
Confidence 14679999999999999999999999999999999999995 699999999999999999999999999
Q ss_pred HHHHHHHhhcCC--CCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHh
Q 006876 560 RLEAGIRMIRPC--GAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY 621 (627)
Q Consensus 560 RL~~EL~~l~p~--~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k 621 (627)
||++||..+.|. ...+++...++|.+++|+|||++|++++|+.+||||+||+|+|++++++|
T Consensus 308 rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 308 RLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred HHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 999999999997 56678888889999999999999999999999999999999999999875
No 14
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.6e-52 Score=457.73 Aligned_cols=309 Identities=36% Similarity=0.538 Sum_probs=261.3
Q ss_pred CHHHHHHHHhh---cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCc--ce
Q 006876 1 MEYILDFAFDR---LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNK--DG 75 (627)
Q Consensus 1 mE~iwd~if~~---L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~--tG 75 (627)
||.+|+|+|.. +... +.+|||+||||+++|.++|+++++++||+|+||+++++.+++|++|++| .. +|
T Consensus 86 ~e~~w~~~~~~~~~~~~~--~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g-----~~~~~g 158 (444)
T COG5277 86 MEQIWDYTFFNKGDLLPS--PEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASG-----SSDETG 158 (444)
T ss_pred HHHHHHHhhcchhhccCC--CcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcC-----CCCCce
Confidence 68999999853 5566 7999999999999999999999999999999999999999999999999 77 99
Q ss_pred EEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhc-----cCCCCCCc---ccHHHHHHHHHhcc-----
Q 006876 76 LAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSL-----KHPQHMTK---LTWEKVEDLKMEHC----- 142 (627)
Q Consensus 76 LVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~-----r~~~~~~~---~~~~~ve~IKE~~C----- 142 (627)
+|||+|++.|||+||+||.++.+++.|+++||+++|.||+++|.. ++..+... .+.++++.||+.+|
T Consensus 159 ~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~ 238 (444)
T COG5277 159 LVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDE 238 (444)
T ss_pred EEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999 55555543 46899999999999
Q ss_pred --ccccCHHHHHHHhhcCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Q 006876 143 --YIAPDYFSEAQLFQKGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQI 220 (627)
Q Consensus 143 --yVa~Dy~~E~~~~~~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l 220 (627)
|++.+..++.+.+... ++.+
T Consensus 239 ~~y~~~~~~~~~~e~~~~-------------------------------~~~~--------------------------- 260 (444)
T COG5277 239 SAYVSLDAEEEFEEEEEK-------------------------------PAEK--------------------------- 260 (444)
T ss_pred ccchhhcchHHHHHHhhh-------------------------------hhhh---------------------------
Confidence 8887766666543220 0000
Q ss_pred hhHHHHHHHHhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccC
Q 006876 221 HGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLS 300 (627)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~ 300 (627)
. ....+.+ +
T Consensus 261 ~---------------------------------------------------------------~~~~~~~--------~ 269 (444)
T COG5277 261 S---------------------------------------------------------------TESTFQL--------S 269 (444)
T ss_pred c---------------------------------------------------------------ccccccc--------c
Confidence 0 0000000 0
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 006876 301 LEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHT 380 (627)
Q Consensus 301 ~eq~kekr~q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~ 380 (627)
. ..+ .
T Consensus 270 ~------------------------------------------------~~~------------------------~--- 274 (444)
T COG5277 270 K------------------------------------------------ETS------------------------I--- 274 (444)
T ss_pred c------------------------------------------------hhc------------------------c---
Confidence 0 000 0
Q ss_pred CCCCCCCCCCCcccccHHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhh
Q 006876 381 NGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQE 460 (627)
Q Consensus 381 ~~~~~~~~~~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 460 (627)
.. .
T Consensus 275 -----------------------------~~------------------------~------------------------ 277 (444)
T COG5277 275 -----------------------------AK------------------------E------------------------ 277 (444)
T ss_pred -----------------------------cc------------------------c------------------------
Confidence 00 0
Q ss_pred cCCCCCCCCCCCCCCccccCCCcCCCCCCCcEEEcCcc-cccccccCcCCC--CCCCCCCC-------------------
Q 006876 461 VDPTFVPKQESGPTQSAAEIPRVRPLTKEDFQIVLGVE-RFRCPEILFRPN--WVGIDQVG------------------- 518 (627)
Q Consensus 461 ~dp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~I~lg~E-rf~~pE~LF~Ps--l~g~~~~g------------------- 518 (627)
+|. ...+..|.++.| ||.+||.||+|. ..+.+..|
T Consensus 278 ---~~~--------------------~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 334 (444)
T COG5277 278 ---SKE--------------------LPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPT 334 (444)
T ss_pred ---ccc--------------------CCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccc
Confidence 000 013578999999 999999999999 88877777
Q ss_pred --------ccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeec
Q 006876 519 --------LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRG 590 (627)
Q Consensus 519 --------L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~G 590 (627)
|++++.++|+. ||.+.|+.|++|||||||+|+||||.+||++||+.+.|..+.++|+.+++|.+.+|+|
T Consensus 335 ~~~~~~~gl~e~v~~si~~---~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~G 411 (444)
T COG5277 335 NLGNDIAGLPELVYQSIQI---CDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLG 411 (444)
T ss_pred cccccccchHHHHHHHHHh---ccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccc
Confidence 99999999995 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcCCCCcccccHHHHhhhChhHHHHhcc
Q 006876 591 ASVYATKLQFPQQTFSRMDYYEKGENWLRRYQL 623 (627)
Q Consensus 591 gsilAsl~~f~~~~ITk~eY~E~G~~iv~~k~~ 623 (627)
||++|++++|..+||||+||+|+|++++++|++
T Consensus 412 aSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 412 ASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred hhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999875
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=3.5e-44 Score=365.35 Aligned_cols=302 Identities=27% Similarity=0.415 Sum_probs=255.6
Q ss_pred CHHHHHHH-HhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhcccc---CccCcceE
Q 006876 1 MEYILDFA-FDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQY---GICNKDGL 76 (627)
Q Consensus 1 mE~iwd~i-f~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~---~~~~~tGL 76 (627)
||.+|... |.+|..+ |++|-.|||||++|++.+|+.++|+|||.|+||.+|++.+++|||-++=.. ....-||+
T Consensus 88 mer~~~q~ifkylr~e--Pedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~ 165 (415)
T KOG0678|consen 88 MERFWEQCIFKYLRAE--PEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGI 165 (415)
T ss_pred HHHHHhhhhhhhhcCC--cccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeE
Confidence 78999988 5789999 899999999999999999999999999999999999999999988765211 12256999
Q ss_pred EEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHHhh
Q 006876 77 AICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQLFQ 156 (627)
Q Consensus 77 VVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~~~ 156 (627)
|||.|.+.|||+||.+|+++..+++.++++|+++|.+.+.+|..++...+...+.+..+.|||++||++.|+..|..++.
T Consensus 166 VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~k~d 245 (415)
T KOG0678|consen 166 VIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFAKYD 245 (415)
T ss_pred EEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988777777888999999999999999888765432
Q ss_pred cCchhhhhccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHH
Q 006876 157 KGTKEAEHKTRCWQLPWVPPPTEEPPSEEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEEN 236 (627)
Q Consensus 157 ~~~~~~~~~~~~~qlP~~~~~~~~~~s~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~ 236 (627)
.
T Consensus 246 ~------------------------------------------------------------------------------- 246 (415)
T KOG0678|consen 246 R------------------------------------------------------------------------------- 246 (415)
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred HHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcc
Q 006876 237 DIAAFLSDTGYVSRQEIESTLVKLTQSLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTT 316 (627)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~ 316 (627)
T Consensus 247 -------------------------------------------------------------------------------- 246 (415)
T KOG0678|consen 247 -------------------------------------------------------------------------------- 246 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 006876 317 TEGRQRAKQKRVEEELEQEKKNQEEEERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLN 396 (627)
Q Consensus 317 ~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s 396 (627)
+|..|++. .+.+
T Consensus 247 -------------------------------ep~K~ikq------------------~~~~------------------- 258 (415)
T KOG0678|consen 247 -------------------------------EPAKWIKQ------------------YTGI------------------- 258 (415)
T ss_pred -------------------------------CHHHHHHH------------------Hhcc-------------------
Confidence 23334432 0000
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCCCCCchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCc
Q 006876 397 AAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFVPKQESGPTQS 476 (627)
Q Consensus 397 ~~~~~rm~~~~~~~~~~~~~~d~fg~~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~~~~~~~~~~~ 476 (627)
T Consensus 259 -------------------------------------------------------------------------------- 258 (415)
T KOG0678|consen 259 -------------------------------------------------------------------------------- 258 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcCCCCCCCcEEEcCcccccccccCcCCCCCCCCC-CCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCc
Q 006876 477 AAEIPRVRPLTKEDFQIVLGVERFRCPEILFRPNWVGIDQ-VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFP 555 (627)
Q Consensus 477 ~~~~~~~~~~~~~~~~I~lg~Erf~~pE~LF~Psl~g~~~-~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ip 555 (627)
++.+.....|++|.|||..||+||+|.+...+. ..|++++...|+. ||+|.|+-||+||+++||+++|.
T Consensus 259 -------~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~---~pIdvrr~ly~nivlsggst~fk 328 (415)
T KOG0678|consen 259 -------NVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQH---CPIDVRRPLYKNIVLSGGSTMFK 328 (415)
T ss_pred -------chhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhh---CCcccchhhhhHHhhccchHHHH
Confidence 000111267899999999999999999876554 5699999999995 79999999999999999999999
Q ss_pred ChHHHHHHHHHhhc--------------CCCCCeeEeeCCCCccceeeccccccCcCCCCcccccHHHHhhhChhHHHHh
Q 006876 556 GMSERLEAGIRMIR--------------PCGAPIKVVRALDPVLDAWRGASVYATKLQFPQQTFSRMDYYEKGENWLRRY 621 (627)
Q Consensus 556 Gf~eRL~~EL~~l~--------------p~~~~v~V~~~~~~~~saW~GgsilAsl~~f~~~~ITk~eY~E~G~~iv~~k 621 (627)
+|..|++.++..+. |....|+|+...-.++++|.|||++||.+.|-..+-||++|+|+|++|++..
T Consensus 329 ~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~si~r~~ 408 (415)
T KOG0678|consen 329 DFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRTN 408 (415)
T ss_pred HhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhChhhhhcC
Confidence 99999999887653 2334577777667789999999999999999999999999999999999864
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=99.96 E-value=4.5e-29 Score=266.70 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=127.9
Q ss_pred CHHHHHHHH-hhcCCCC-CCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEE
Q 006876 1 MEYILDFAF-DRLGANG-SEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAI 78 (627)
Q Consensus 1 mE~iwd~if-~~L~v~~-~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVV 78 (627)
++.||+|++ ++|+|.+ ....+.+|++.|-..-+...+.+..+||-.++|.++.++..++++.||+| .+++|||
T Consensus 206 lt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG-----lss~CVV 280 (618)
T KOG0797|consen 206 LTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG-----LSSACVV 280 (618)
T ss_pred HHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC-----ccceeEE
Confidence 368999998 4799983 23678999999999888888899999999999999999999999999999 8999999
Q ss_pred ecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCC-----CCCCcccHHHHHHHHHhccccccC
Q 006876 79 CPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHP-----QHMTKLTWEKVEDLKMEHCYIAPD 147 (627)
Q Consensus 79 DiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~-----~~~~~~~~~~ve~IKE~~CyVa~D 147 (627)
|+|.+.|+|++|-+|.+++++..++++||.++|..+..+|...++ ++....++.+++.+||++|.+..+
T Consensus 281 diGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~a 354 (618)
T KOG0797|consen 281 DIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRAA 354 (618)
T ss_pred EccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccHh
Confidence 999999999999999999999999999999999999999987543 455678999999999999998753
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.89 E-value=2.1e-23 Score=221.36 Aligned_cols=141 Identities=16% Similarity=0.057 Sum_probs=113.9
Q ss_pred CHHHHHHHHhhcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876 1 MEYILDFAFDRLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP 80 (627)
Q Consensus 1 mE~iwd~if~~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi 80 (627)
+|.+|+|+|+++........+++++|.|+.++...|+.+.+ +||.++++.+++++++++|+|++|.......+++|||+
T Consensus 81 ~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDi 159 (335)
T PRK13930 81 TEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDI 159 (335)
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEe
Confidence 58899999976533211346789999999998888877777 69999999999999999999999821111256899999
Q ss_pred CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccC
Q 006876 81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD 147 (627)
Q Consensus 81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~D 147 (627)
|+++|+|+||..|.++. ...+++||.++|++|.++|..++ .+ ..+...++.+|+++|+++.+
T Consensus 160 G~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~~K~~~~~~~~~ 221 (335)
T PRK13930 160 GGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRKY-NL--LIGERTAEEIKIEIGSAYPL 221 (335)
T ss_pred CCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHHh-CC--CCCHHHHHHHHHHhhcCcCC
Confidence 99999999999999875 56789999999999999998753 22 23567899999999998755
No 18
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.86 E-value=8.4e-22 Score=210.16 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=112.5
Q ss_pred CHHHHHHHHh----hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceE
Q 006876 1 MEYILDFAFD----RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGL 76 (627)
Q Consensus 1 mE~iwd~if~----~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGL 76 (627)
++.+|+|++. .|+.. +..+++|+|.|+.++...|+.+.+ +|+.+|++.+++++++++|++++|.......+++
T Consensus 77 ~~~~l~~~~~~~~~~l~~~--~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~l 153 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMT--FRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANV 153 (335)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEE
Confidence 3678999985 46766 556799999999999999999999 8999999999999999999999872212246799
Q ss_pred EEecCCCceeeeee-ecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccC
Q 006876 77 AICPGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD 147 (627)
Q Consensus 77 VVDiG~~~T~IvPV-~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~D 147 (627)
|||+|++.|+++|+ ++|.... ..+++||.++|++|.++|...+ .+ ..+...+++||+++|+++.+
T Consensus 154 vvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~id~~l~~~l~~~~-~~--~~~~~~AE~iK~~l~~~~~~ 219 (335)
T PRK13929 154 VVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQLDEDIVSFVRKKY-NL--LIGERTAEQVKMEIGYALIE 219 (335)
T ss_pred EEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHHcCCCCC
Confidence 99999999999999 5554433 3468999999999999997543 22 23567899999999998654
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.86 E-value=1e-21 Score=208.90 Aligned_cols=139 Identities=13% Similarity=0.038 Sum_probs=109.6
Q ss_pred CHHHHHHHHhh-cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFDR-LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~~-L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
|+.+|+|+|.+ +.... ...-++++|.|+.++...|+. ++.+|+.++++.+++++++++|+|++|.......+++|||
T Consensus 79 ~~~~~~~~l~~~~~~~~-~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvD 156 (333)
T TIGR00904 79 TEKMIKYFIKQVHSRKS-FFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVD 156 (333)
T ss_pred HHHHHHHHHHHHhcccc-cCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEE
Confidence 47899999964 44321 111269999999999999887 5568999999999999999999999982111126789999
Q ss_pred cCCCceeeeee-ecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccC
Q 006876 80 PGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPD 147 (627)
Q Consensus 80 iG~~~T~IvPV-~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~D 147 (627)
+|++.|+|++| ++|.++... +++||.++|++|.+++..++. ...+...++.+|+++|++..+
T Consensus 157 iG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~~~---~~~~~~~ae~lK~~l~~~~~~ 219 (333)
T TIGR00904 157 IGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRTYN---LLIGEQTAERIKIEIGSAYPL 219 (333)
T ss_pred cCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHHhc---ccCCHHHHHHHHHHHhccccc
Confidence 99999999999 777776644 479999999999999876532 234567899999999998654
No 20
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.85 E-value=1.8e-21 Score=206.89 Aligned_cols=137 Identities=12% Similarity=0.039 Sum_probs=106.2
Q ss_pred CHHHHHHHHhh-cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFDR-LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~~-L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
+|.+|.|+|.+ ++. +.++|.+++..|.++...++++++.+|+.++++.+++++++++|+|++|........++|||
T Consensus 78 ~~~ll~~~~~~~~~~---~~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvD 154 (334)
T PRK13927 78 TEKMLKYFIKKVHKN---FRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVD 154 (334)
T ss_pred HHHHHHHHHHHHhhc---cCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEE
Confidence 47899999964 444 24554444444567777788899999999999999999999999999982111124579999
Q ss_pred cCCCceeeeee-ecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcccccc
Q 006876 80 PGFSTTHVIPF-VEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAP 146 (627)
Q Consensus 80 iG~~~T~IvPV-~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~ 146 (627)
+|+++|+|+|+ ++|.+...+ +++||.++|++|.++|..++ .+ ..+...++++|+.+|++..
T Consensus 155 iGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~iK~~~~~~~~ 216 (334)
T PRK13927 155 IGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NL--LIGERTAERIKIEIGSAYP 216 (334)
T ss_pred eCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHhhccCC
Confidence 99999999999 777776554 47999999999999997543 22 2356789999999998764
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.74 E-value=2.6e-18 Score=183.21 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=107.2
Q ss_pred CHHHHHHHHhhcCCCCCCCccc-EEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEe
Q 006876 1 MEYILDFAFDRLGANGSEIDHP-VLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAIC 79 (627)
Q Consensus 1 mE~iwd~if~~L~v~~~p~d~p-VLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVD 79 (627)
++.+|+|+++++.... +..+| +++|. |.+....+++.++.+|+.++++.+.+++++++|+|++|........++|||
T Consensus 76 ~~~~l~~~~~~~~~~~-~~~~p~~vitv-P~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvD 153 (336)
T PRK13928 76 TEKMLKYFINKACGKR-FFSKPRIMICI-PTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVD 153 (336)
T ss_pred HHHHHHHHHHHHhccC-CCCCCeEEEEe-CCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEE
Confidence 3679999997664442 35677 88888 555566777888888999999999999999999999982111125689999
Q ss_pred cCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccc
Q 006876 80 PGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA 145 (627)
Q Consensus 80 iG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa 145 (627)
+|+++|.|++|..|.++.. ..+++||.++|+.|.+.|..++ .+ ......++++|+.+|++.
T Consensus 154 iGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~~~~-~~--~~~~~~ae~lK~~~~~~~ 214 (336)
T PRK13928 154 IGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIRKKY-KL--LIGERTAEEIKIKIGTAF 214 (336)
T ss_pred eCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHHHHh-ch--hcCHHHHHHHHHHhcccc
Confidence 9999999999999977654 4689999999999999987543 22 234567888888888764
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.50 E-value=6.4e-14 Score=148.80 Aligned_cols=137 Identities=17% Similarity=0.088 Sum_probs=100.6
Q ss_pred HHHHHHHHhh-cCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEec
Q 006876 2 EYILDFAFDR-LGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICP 80 (627)
Q Consensus 2 E~iwd~if~~-L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDi 80 (627)
+.++.|++++ ++-.. .....++++.|.-.+...|+.+.+.+- ..++..|+++..|+++.++.|-.-......+|||+
T Consensus 75 ~~~l~~~l~k~~~~~~-~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 75 EEMLRYFLKKALGRRS-FFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHTSS--SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHhccCCC-CCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 5778888865 33221 345669999999999999999999975 58999999999999999999821111345799999
Q ss_pred CCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccc
Q 006876 81 GFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA 145 (627)
Q Consensus 81 G~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa 145 (627)
|.++|.|.-+..|.++. .+.+++||.++++-+.+++..+|. + .+....+++||+.++++.
T Consensus 153 G~GtTdiavislggiv~--s~si~~gG~~~DeaI~~~ir~~y~-l--~Ig~~tAE~iK~~~g~~~ 212 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIVA--SRSIRIGGDDIDEAIIRYIREKYN-L--LIGERTAEKIKIEIGSAS 212 (326)
T ss_dssp -SS-EEEEEEETTEEEE--EEEES-SHHHHHHHHHHHHHHHHS-E--E--HHHHHHHHHHH-BSS
T ss_pred CCCeEEEEEEECCCEEE--EEEEEecCcchhHHHHHHHHHhhC-c--ccCHHHHHHHHHhcceee
Confidence 99999999998888876 678899999999999999998873 3 468899999999998875
No 23
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.82 E-value=8.5e-08 Score=98.18 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=88.4
Q ss_pred HHHHHHHHh----hcCCCCCCCcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEE
Q 006876 2 EYILDFAFD----RLGANGSEIDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLA 77 (627)
Q Consensus 2 E~iwd~if~----~L~v~~~p~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLV 77 (627)
+.++.++++ +++.. -..++++.|.......|+.+.+. ++.-|+.-+.+..+++++.++++ ...++|
T Consensus 43 ~~~l~~l~~~a~~~~g~~----~~~vvisVP~~~~~~~r~a~~~a-~~~aGl~~~~li~ep~Aaa~~~~-----~~~~~v 112 (239)
T TIGR02529 43 VEIVRRLKDTLEQKLGIE----LTHAATAIPPGTIEGDPKVIVNV-IESAGIEVLHVLDEPTAAAAVLQ-----IKNGAV 112 (239)
T ss_pred HHHHHHHHHHHHHHhCCC----cCcEEEEECCCCCcccHHHHHHH-HHHcCCceEEEeehHHHHHHHhc-----CCCcEE
Confidence 345666652 34433 34699999988888888877765 45569999999999999888887 556799
Q ss_pred EecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 006876 78 ICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKME 140 (627)
Q Consensus 78 VDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~ 140 (627)
||+|++.|.+.-+..|.++. .+.+++||.++|+.+.+.+. ++...++.+|..
T Consensus 113 vDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~ 164 (239)
T TIGR02529 113 VDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRG 164 (239)
T ss_pred EEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHHhC---------CCHHHHHHHHHh
Confidence 99999999988888888775 56779999999988765442 244555666544
No 24
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.49 E-value=3e-06 Score=88.15 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=71.7
Q ss_pred cEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeE
Q 006876 22 PVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSC 101 (627)
Q Consensus 22 pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~ 101 (627)
.|+++.|......++..+. -..+.-|+.-..+...+.++.++.+ ...++|||+|.+.|.++-+.+|.++. ..
T Consensus 90 ~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~-----~~~~~vvDIGggtt~i~v~~~g~~~~--~~ 161 (267)
T PRK15080 90 HAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLG-----IDNGAVVDIGGGTTGISILKDGKVVY--SA 161 (267)
T ss_pred eEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhC-----CCCcEEEEeCCCcEEEEEEECCeEEE--Ee
Confidence 4677888777666777766 5567789988888899888888776 45689999999999998888888776 35
Q ss_pred EecccHHHHHHHHHHHH
Q 006876 102 RTNIGGYHITDYLKQLL 118 (627)
Q Consensus 102 rl~iGG~~lt~yL~~lL 118 (627)
.+++||.++|+.+.+.+
T Consensus 162 ~~~~GG~~it~~Ia~~l 178 (267)
T PRK15080 162 DEPTGGTHMSLVLAGAY 178 (267)
T ss_pred cccCchHHHHHHHHHHh
Confidence 67999999999987654
No 25
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.38 E-value=4.6e-06 Score=87.61 Aligned_cols=121 Identities=16% Similarity=0.046 Sum_probs=94.3
Q ss_pred cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccC
Q 006876 20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRG 99 (627)
Q Consensus 20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a 99 (627)
.-.|+++.|...+...|+.+-+.+- .-+...|++...+.+|.++.|..-.-.+-+.|||+|.++|.|.-+..|-++.
T Consensus 101 ~prI~i~vP~g~T~VErrAi~ea~~-~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~-- 177 (342)
T COG1077 101 KPRIVICVPSGITDVERRAIKEAAE-SAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS-- 177 (342)
T ss_pred CCcEEEEecCCccHHHHHHHHHHHH-hccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE--
Confidence 3358888888899999999999876 4577899999999999999982211123489999999999988776655554
Q ss_pred eEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcccccc
Q 006876 100 SCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAP 146 (627)
Q Consensus 100 ~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~ 146 (627)
...+-+||..++.-+-..+..+|.- .+-...+++||...+|+..
T Consensus 178 ~~Sirv~GD~~De~Ii~yvr~~~nl---~IGe~taE~iK~eiG~a~~ 221 (342)
T COG1077 178 SSSVRVGGDKMDEAIIVYVRKKYNL---LIGERTAEKIKIEIGSAYP 221 (342)
T ss_pred EeeEEEecchhhHHHHHHHHHHhCe---eecHHHHHHHHHHhccccc
Confidence 3456699999999999888876543 3456679999999888764
No 26
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=98.32 E-value=3.7e-06 Score=91.23 Aligned_cols=102 Identities=19% Similarity=0.127 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHH
Q 006876 32 PVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHIT 111 (627)
Q Consensus 32 p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt 111 (627)
++.....+.+ +++..|+.-+.+..+++++.+++..........+|||+|+++|.++.+.+|.+.. .+.+++||.++|
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 4555555555 4567788888888899888887642111123579999999999999999998765 577999999999
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhccccc
Q 006876 112 DYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIA 145 (627)
Q Consensus 112 ~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa 145 (627)
+.+.+.|. .+...++++|..++.+.
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCAS 257 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEec
Confidence 99877542 35788999999998754
No 27
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.30 E-value=1.8e-06 Score=99.56 Aligned_cols=99 Identities=11% Similarity=-0.056 Sum_probs=74.3
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCeec-c
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEPV-Y 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~i-~ 97 (627)
..++||.|.......|+.+.+. .+.-|+.-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+- +|..- .
T Consensus 130 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vl 208 (599)
T TIGR01991 130 VGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVL 208 (599)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEE
Confidence 4699999999999999998877 577899999999999998887762222235679999999999876552 33221 1
Q ss_pred cCeEEecccHHHHHHHHHHHHhc
Q 006876 98 RGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
....-..+||.++++.|.+++..
T Consensus 209 a~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 209 ATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHH
Confidence 11122489999999999988764
No 28
>CHL00094 dnaK heat shock protein 70
Probab=98.29 E-value=1.4e-05 Score=92.58 Aligned_cols=99 Identities=16% Similarity=0.032 Sum_probs=74.3
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeec---c
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPV---Y 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i---~ 97 (627)
..++||.|.......|+.+.+.. +.-|+.-+.+++.|++|++++|........-+|+|+|.+++.|.-+-.+... .
T Consensus 136 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vl 214 (621)
T CHL00094 136 TQAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVL 214 (621)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEE
Confidence 35888999999999998887764 5779999999999999998887322223467999999999988766433211 1
Q ss_pred cCeEEecccHHHHHHHHHHHHhc
Q 006876 98 RGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
....-.++||.++++.|.+++..
T Consensus 215 a~~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 215 STSGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred EEecCCCcChHHHHHHHHHHHHH
Confidence 12234689999999999887753
No 29
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.28 E-value=1.8e-05 Score=91.21 Aligned_cols=100 Identities=16% Similarity=-0.010 Sum_probs=74.1
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeee--ecCeec-c
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPF--VEGEPV-Y 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV--~dG~~i-~ 97 (627)
..+|||.|...+...|+.+.+. .+.-|++-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+ .+|..- .
T Consensus 142 ~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~ 220 (595)
T PRK01433 142 TKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI 220 (595)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence 4699999999999999888877 56779999999999999999887322123457999999999877555 244221 1
Q ss_pred cCeEEecccHHHHHHHHHHHHhcc
Q 006876 98 RGSCRTNIGGYHITDYLKQLLSLK 121 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL~~r 121 (627)
....-..+||.+++..|.+.+..+
T Consensus 221 at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 221 ATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred EEcCCcccChHHHHHHHHHHHHHh
Confidence 111224699999999998877653
No 30
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.24 E-value=3e-05 Score=90.52 Aligned_cols=99 Identities=12% Similarity=-0.051 Sum_probs=75.5
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCeec-c
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEPV-Y 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~i-~ 97 (627)
..++||.|.+.....|+.+.+. .+.-|++-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+- +|... .
T Consensus 175 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~ 253 (663)
T PTZ00400 175 KQAVITVPAYFNDSQRQATKDA-GKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVK 253 (663)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEE
Confidence 4699999999999999888775 556799999999999999998883222235679999999999886552 44332 1
Q ss_pred cCeEEecccHHHHHHHHHHHHhc
Q 006876 98 RGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
....-.++||.+++..|.+++..
T Consensus 254 a~~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 254 ATNGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 12233589999999999887754
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=98.23 E-value=1.1e-05 Score=89.28 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHH
Q 006876 32 PVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHIT 111 (627)
Q Consensus 32 p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt 111 (627)
+......+.. +++.-++.-..++.+++++.++...........+|||+|+++|.++-+.+|.+.. ...+++||.++|
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHH
Confidence 3444455555 5688888888888999998888752211134579999999999999999998774 678999999999
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhcccc
Q 006876 112 DYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYI 144 (627)
Q Consensus 112 ~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyV 144 (627)
+.|...|. ++...++.+|..+...
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~ 264 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCA 264 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhccee
Confidence 99876552 3668899999886643
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.21 E-value=1.7e-05 Score=91.53 Aligned_cols=99 Identities=14% Similarity=0.012 Sum_probs=73.1
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC-ccCcceEEEecCCCceeeeeee--cCee-c
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVIPFV--EGEP-V 96 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~-~~~~tGLVVDiG~~~T~IvPV~--dG~~-i 96 (627)
..++||.|.......|+.+.+. .+.-|++-+.+++.+++|++++|... ....+-+|+|+|.+++.|.-+- +|.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 3589999999999999988775 55679999999999999888876221 2245689999999999876553 2221 1
Q ss_pred ccCeEEecccHHHHHHHHHHHHhc
Q 006876 97 YRGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 97 ~~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
.....-.++||.+++..|.+++..
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHH
Confidence 111223579999999999887753
No 33
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.21 E-value=2.1e-05 Score=91.35 Aligned_cols=99 Identities=14% Similarity=-0.007 Sum_probs=73.4
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecC--ee-cc
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEG--EP-VY 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG--~~-i~ 97 (627)
..++||.|...+...|+.+.+. .+..|++-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+--+ .. +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 4699999999999999888765 45679999999999999888887321124678999999999987655332 11 11
Q ss_pred cCeEEecccHHHHHHHHHHHHhc
Q 006876 98 RGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
....-.++||.+++..|.+++..
T Consensus 213 a~~gd~~lGG~d~D~~l~~~~~~ 235 (627)
T PRK00290 213 STNGDTHLGGDDFDQRIIDYLAD 235 (627)
T ss_pred EecCCCCcChHHHHHHHHHHHHH
Confidence 11223579999999999887653
No 34
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.19 E-value=1.2e-05 Score=93.02 Aligned_cols=100 Identities=11% Similarity=-0.039 Sum_probs=74.0
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCee-cc
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VY 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~-i~ 97 (627)
..++||.|.......|+.+.+. .+..|++-+.+++.|++|++++|.......+-+|+|+|.+++.|..+- .|.. +.
T Consensus 150 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evl 228 (616)
T PRK05183 150 DGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVL 228 (616)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEE
Confidence 4699999999999999888766 677899999999999999887762211234578999999999876553 2321 11
Q ss_pred cCeEEecccHHHHHHHHHHHHhcc
Q 006876 98 RGSCRTNIGGYHITDYLKQLLSLK 121 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL~~r 121 (627)
....-..+||.+++..|.+.+..+
T Consensus 229 at~gd~~lGG~d~D~~l~~~~~~~ 252 (616)
T PRK05183 229 ATGGDSALGGDDFDHLLADWILEQ 252 (616)
T ss_pred EecCCCCcCHHHHHHHHHHHHHHH
Confidence 112235799999999998877643
No 35
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.17 E-value=2.1e-05 Score=91.75 Aligned_cols=99 Identities=15% Similarity=0.005 Sum_probs=73.7
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCee-cc
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEP-VY 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~-i~ 97 (627)
..+|||.|...+...|+.+.+.. +.-|+.-+.+++.+++|++++|.......+-+|+|+|++++.|.-+- +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 35999999999999998877764 67799999999999999888873222235689999999999876553 3321 11
Q ss_pred cCeEEecccHHHHHHHHHHHHhc
Q 006876 98 RGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
....-.++||.+++..|.++|..
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHH
Confidence 11223579999999999877754
No 36
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.06 E-value=5.3e-05 Score=88.28 Aligned_cols=99 Identities=10% Similarity=-0.062 Sum_probs=73.6
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeee--cCeeccc
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFV--EGEPVYR 98 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~--dG~~i~~ 98 (627)
..+|||.|.......|+.+.+. .+.-|+.-+.+++.|++|++++|.......+-+|+|+|.+++.|.-+- +|..--.
T Consensus 161 ~~aVITVPayF~~~qR~at~~A-a~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDA-GTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHH-HHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 4699999999999999887765 567799989999999999988873211235679999999999876553 4533211
Q ss_pred C-eEEecccHHHHHHHHHHHHhc
Q 006876 99 G-SCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 99 a-~~rl~iGG~~lt~yL~~lL~~ 120 (627)
+ ..-.++||.+++..|.+.+..
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHH
Confidence 1 223589999999998877653
No 37
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.03 E-value=5.6e-05 Score=88.18 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=72.3
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC-ccCcceEEEecCCCceeeeeee--cCee-c
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVIPFV--EGEP-V 96 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~-~~~~tGLVVDiG~~~T~IvPV~--dG~~-i 96 (627)
..++||.|.......|+.+.+. .+.-|+.-+.+++.|++|++++|... ....+-+|+|+|.+++.|.-+- +|.. +
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V 212 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV 212 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence 4599999999999999988775 55679999999999999998887211 1134579999999999876442 2221 1
Q ss_pred ccCeEEecccHHHHHHHHHHHHhc
Q 006876 97 YRGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 97 ~~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
.....-..+||.++++.|.++|..
T Consensus 213 ~at~gd~~LGG~dfD~~l~~~l~~ 236 (653)
T PRK13411 213 KATAGNNHLGGDDFDNCIVDWLVE 236 (653)
T ss_pred EEEecCCCcCHHHHHHHHHHHHHH
Confidence 111222479999999999887653
No 38
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.02 E-value=9.5e-05 Score=86.55 Aligned_cols=99 Identities=16% Similarity=0.024 Sum_probs=73.7
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecC--ee-cc
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEG--EP-VY 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG--~~-i~ 97 (627)
..++||.|.......|+.+.+. .+.-|+.-+.+++.+++|++++|........-+|+|+|.+++.|.-+--+ .. +.
T Consensus 173 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVl 251 (673)
T PLN03184 173 TKAVITVPAYFNDSQRTATKDA-GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVL 251 (673)
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEE
Confidence 4699999999999999888765 56779999999999999988887321123467999999999987655322 21 11
Q ss_pred cCeEEecccHHHHHHHHHHHHhc
Q 006876 98 RGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
....-.++||.++++.|.+++..
T Consensus 252 a~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 252 STSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred EecCCCccCHHHHHHHHHHHHHH
Confidence 11223589999999999887753
No 39
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=97.95 E-value=0.0001 Score=86.06 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=73.0
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC--ccCcceEEEecCCCceeeeeee--cCeec
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG--ICNKDGLAICPGFSTTHVIPFV--EGEPV 96 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~--~~~~tGLVVDiG~~~T~IvPV~--dG~~i 96 (627)
..++||.|.+.....|+.+.+. .+..|+.-+.+++.+++|++++|... ....+-+|+|+|++++.|.-+- +|..-
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKDA-GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHHH-HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 4699999999999999887765 56789999999999999888876211 1134689999999999875542 34321
Q ss_pred ccC-eEEecccHHHHHHHHHHHHhc
Q 006876 97 YRG-SCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 97 ~~a-~~rl~iGG~~lt~yL~~lL~~ 120 (627)
-.+ ..-.++||.+++..|.+++..
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHH
Confidence 111 123579999999999887653
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.33 E-value=0.013 Score=67.47 Aligned_cols=99 Identities=17% Similarity=0.059 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC-ccCcceEEEecCCCceeeeee--ecCeecc
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG-ICNKDGLAICPGFSTTHVIPF--VEGEPVY 97 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~-~~~~tGLVVDiG~~~T~IvPV--~dG~~i~ 97 (627)
..++||.|...+...|+.+.+. .+.-|++-+.+++.+.+|+++++... ....+-+|||+|++++.|.-+ .+|..--
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~A-a~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDA-AELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHH-HHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhccccc-ccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 4699999999999999888876 45678888889999988877665111 113578999999999876655 3443321
Q ss_pred -cCeEEecccHHHHHHHHHHHHhc
Q 006876 98 -RGSCRTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 98 -~a~~rl~iGG~~lt~yL~~lL~~ 120 (627)
.......+||.+++..|.++|..
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccccccccceecceeeccccc
Confidence 22334689999999999887754
No 41
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=96.13 E-value=0.02 Score=63.48 Aligned_cols=93 Identities=18% Similarity=0.115 Sum_probs=70.8
Q ss_pred HHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhcc
Q 006876 42 LLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLK 121 (627)
Q Consensus 42 vLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r 121 (627)
-++|.-++.-..++.++++|.++.=...-....+++||+|+++|.|.-+.+|.+.. +..+|+||.++|.=+...|..
T Consensus 172 k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~--~~~ipvgG~~vT~DIa~~l~t- 248 (418)
T COG0849 172 KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY--TGVIPVGGDHVTKDIAKGLKT- 248 (418)
T ss_pred HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEE--EeeEeeCccHHHHHHHHHhCC-
Confidence 34566666666666677777666531112245789999999999999999999987 567999999999999887643
Q ss_pred CCCCCCcccHHHHHHHHHhccccc
Q 006876 122 HPQHMTKLTWEKVEDLKMEHCYIA 145 (627)
Q Consensus 122 ~~~~~~~~~~~~ve~IKE~~CyVa 145 (627)
+.+.+++||.+|....
T Consensus 249 --------~~~~AE~iK~~~g~a~ 264 (418)
T COG0849 249 --------PFEEAERIKIKYGSAL 264 (418)
T ss_pred --------CHHHHHHHHHHcCccc
Confidence 6788999999976543
No 42
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.035 Score=64.13 Aligned_cols=101 Identities=15% Similarity=0.008 Sum_probs=77.7
Q ss_pred cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeec--C-eec
Q 006876 20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVE--G-EPV 96 (627)
Q Consensus 20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~d--G-~~i 96 (627)
-..++||.|.+.....|..+.+. ....|++-+.+++.|++|+|++|.......+=+|+|+|.+++.|.-|-- | +.+
T Consensus 120 v~~~VItVPayF~d~qR~at~~A-~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev 198 (579)
T COG0443 120 VTDAVITVPAYFNDAQRQATKDA-ARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEV 198 (579)
T ss_pred cceEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEE
Confidence 45699999999999998777766 5578999999999999999999943333457899999999997766633 3 122
Q ss_pred ccCeEEecccHHHHHHHHHHHHhcc
Q 006876 97 YRGSCRTNIGGYHITDYLKQLLSLK 121 (627)
Q Consensus 97 ~~a~~rl~iGG~~lt~yL~~lL~~r 121 (627)
.....-..+||.+++..|...+...
T Consensus 199 ~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 199 LATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred eecCCCcccCchhHHHHHHHHHHHH
Confidence 2334457899999998887776543
No 43
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=95.86 E-value=0.021 Score=60.95 Aligned_cols=100 Identities=16% Similarity=-0.002 Sum_probs=74.2
Q ss_pred EEEEeCCC-CChHHHHHHHHHHhhh--------cCCCeEEeehhhhhhhhhcccc----CccCcceEEEecCCCceeeee
Q 006876 23 VLITECVC-NPVHSRSKMAELLFET--------YGVPSVAFGVDAAFSYKYNQQY----GICNKDGLAICPGFSTTHVIP 89 (627)
Q Consensus 23 VLLTEp~~-~p~~~Rekl~EvLFE~--------f~vpsv~~~~~a~lslya~G~~----~~~~~tGLVVDiG~~~T~IvP 89 (627)
.|+|-=|. .-...++.+.+.+-.. +.|..|.+.+|++-|++..-.. .....+.+|||+|+.+|.++.
T Consensus 104 ~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~ 183 (320)
T TIGR03739 104 QLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLV 183 (320)
T ss_pred EEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeeh
Confidence 35555444 3456778887776543 5788899999998777654100 012456799999999999998
Q ss_pred eecCeecccCeEEecccHHHHHHHHHHHHhccC
Q 006876 90 FVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKH 122 (627)
Q Consensus 90 V~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~ 122 (627)
+-++.+....+..++.|-..+.+-+.+.|..++
T Consensus 184 ~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~ 216 (320)
T TIGR03739 184 ARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDI 216 (320)
T ss_pred ccCCEEcccccCCchhHHHHHHHHHHHHHHhhc
Confidence 888888888888899999999999999987653
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=95.28 E-value=0.043 Score=59.40 Aligned_cols=91 Identities=14% Similarity=-0.071 Sum_probs=67.6
Q ss_pred cCCCeEEeehhhhhhhhhccccC--------ccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHH
Q 006876 47 YGVPSVAFGVDAAFSYKYNQQYG--------ICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLL 118 (627)
Q Consensus 47 f~vpsv~~~~~a~lslya~G~~~--------~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL 118 (627)
..|..|.+.+|++.++|...... -.....+|||+|+.+|.++-+.+|.+....+..++.|+.++-+.+.+.|
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHH
Confidence 45667888999988887553110 0123469999999999999999999988888889999999999999999
Q ss_pred hccCCCCCCcccHHHHHHHHH
Q 006876 119 SLKHPQHMTKLTWEKVEDLKM 139 (627)
Q Consensus 119 ~~r~~~~~~~~~~~~ve~IKE 139 (627)
..+.+.. .++...++++.+
T Consensus 231 ~~~~~~~--~~~~~~ie~~l~ 249 (344)
T PRK13917 231 SKKEEGA--SITPYMLEKGLE 249 (344)
T ss_pred HhhCCCC--CCCHHHHHHHHH
Confidence 6544332 345566666643
No 45
>PRK11678 putative chaperone; Provisional
Probab=95.26 E-value=0.17 Score=56.91 Aligned_cols=93 Identities=18% Similarity=0.078 Sum_probs=65.1
Q ss_pred ccEEEEeCCCCC-----hHHHHHH--HHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecC
Q 006876 21 HPVLITECVCNP-----VHSRSKM--AELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEG 93 (627)
Q Consensus 21 ~pVLLTEp~~~p-----~~~Rekl--~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG 93 (627)
..+|||.|.... ..+|... +.-..+.-|++.+.+++.|++|.+++|.......+-+|+|+|.+++.+.-|--+
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~ 229 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMG 229 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEec
Confidence 459999998754 5555432 344467789999999999999999887321224568999999999877555221
Q ss_pred -----------eecccCeEEecccHHHHHHHHH
Q 006876 94 -----------EPVYRGSCRTNIGGYHITDYLK 115 (627)
Q Consensus 94 -----------~~i~~a~~rl~iGG~~lt~yL~ 115 (627)
.++..+. ..+||.+++..|.
T Consensus 230 ~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~ 260 (450)
T PRK11678 230 PSWRGRADRSASLLGHSG--QRIGGNDLDIALA 260 (450)
T ss_pred CcccccCCcceeEEecCC--CCCChHHHHHHHH
Confidence 1222222 3699999999985
No 46
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=94.99 E-value=0.22 Score=53.31 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=74.0
Q ss_pred cEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhh--hhhh-----ccccCccCc-ceEEEecCCCceeeeeeecC
Q 006876 22 PVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAF--SYKY-----NQQYGICNK-DGLAICPGFSTTHVIPFVEG 93 (627)
Q Consensus 22 pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~l--slya-----~G~~~~~~~-tGLVVDiG~~~T~IvPV~dG 93 (627)
.|+++-. |+...+.+.++ |+..|+.-..+..++++ -++. .. ...... +.++||+|++.|+++-+.+|
T Consensus 134 ~v~v~a~---~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~-~~~~~~~~~~lvdiG~~~t~l~i~~~g 208 (348)
T TIGR01175 134 QVLLAAT---RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLA-SRTYRLTDAALVDIGATSSTLNLLHPG 208 (348)
T ss_pred EEEEEEe---cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCc-cccccCceEEEEEECCCcEEEEEEECC
Confidence 4555533 77777788777 66667665444444433 3332 11 001123 48999999999999999999
Q ss_pred eecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcccc
Q 006876 94 EPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYI 144 (627)
Q Consensus 94 ~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyV 144 (627)
.++. ++.+++||.++|+-+.+.+. ++.+.++.+|....+.
T Consensus 209 ~~~~--~r~i~~G~~~i~~~i~~~~~---------~~~~~Ae~~k~~~~~~ 248 (348)
T TIGR01175 209 RMLF--TREVPFGTRQLTSELSRAYG---------LNPEEAGEAKQQGGLP 248 (348)
T ss_pred eEEE--EEEeechHHHHHHHHHHHcC---------CCHHHHHHHHhcCCCC
Confidence 9887 68899999999998876542 3677888999887653
No 47
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=91.00 E-value=1.3 Score=47.66 Aligned_cols=108 Identities=28% Similarity=0.347 Sum_probs=67.7
Q ss_pred CcccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehh--hhhhhhhccc-c---CccCcceEEEecCCCceeeeeeec
Q 006876 19 IDHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVD--AAFSYKYNQQ-Y---GICNKDGLAICPGFSTTHVIPFVE 92 (627)
Q Consensus 19 ~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~--a~lslya~G~-~---~~~~~tGLVVDiG~~~T~IvPV~d 92 (627)
....|+++-. |+..-+...++ |+..|+.-..+-.+ +++-+|.... . .....+-+|||+|+..|+++-+.+
T Consensus 124 ~~~~Vll~Aa---~k~~v~~~~~~-~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~ 199 (340)
T PF11104_consen 124 EKMEVLLVAA---PKEIVESYVEL-FEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQN 199 (340)
T ss_dssp SEEEEEEEEE---EHHHHHHHHHH-HHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEET
T ss_pred CceEEEEEEE---cHHHHHHHHHH-HHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEEC
Confidence 3466777665 56666666655 66777765444333 4444443310 0 001234589999999999999999
Q ss_pred CeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc
Q 006876 93 GEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEH 141 (627)
Q Consensus 93 G~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~ 141 (627)
|.++. .+.+++||.++++-+.+.+. ++....+.+|...
T Consensus 200 g~~~f--~R~i~~G~~~l~~~i~~~~~---------i~~~~Ae~~k~~~ 237 (340)
T PF11104_consen 200 GKPIF--SRSIPIGGNDLTEAIARELG---------IDFEEAEELKRSG 237 (340)
T ss_dssp TEEEE--EEEES-SHHHHHHHHHHHTT-----------HHHHHHHHHHT
T ss_pred CEEEE--EEEEeeCHHHHHHHHHHhcC---------CCHHHHHHHHhcC
Confidence 99886 67899999999999987642 3566777777764
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=90.30 E-value=0.51 Score=50.49 Aligned_cols=114 Identities=16% Similarity=0.063 Sum_probs=68.1
Q ss_pred HHHHHhhcCCCCCCCcccEEEEeCCC---CCh--HHHHHHH----HHHh-------hhcCCCeEEeehhhhhhhhhcccc
Q 006876 5 LDFAFDRLGANGSEIDHPVLITECVC---NPV--HSRSKMA----ELLF-------ETYGVPSVAFGVDAAFSYKYNQQY 68 (627)
Q Consensus 5 wd~if~~L~v~~~p~d~pVLLTEp~~---~p~--~~Rekl~----EvLF-------E~f~vpsv~~~~~a~lslya~G~~ 68 (627)
.+|++.+-|+. +.+..|+++-|.- ... ..++.+. .++. ..+.+..|.+.++++.|+|..-..
T Consensus 82 v~haL~~~G~~--~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 82 VHHALLKAGLE--PQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHHHHS----SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHcCCC--CCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 46677666777 6777788887732 221 1222232 1222 145577899999999888865311
Q ss_pred CccCcceEEEecCCCceeeeeeecCeecccCeE-EecccHHHHHHHHHHHHhc
Q 006876 69 GICNKDGLAICPGFSTTHVIPFVEGEPVYRGSC-RTNIGGYHITDYLKQLLSL 120 (627)
Q Consensus 69 ~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~-rl~iGG~~lt~yL~~lL~~ 120 (627)
-....+.+|||+|+.+|.++-|.++.+....+. ..++|-..+.+.+.+.|..
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 011356899999999999998877765544443 4578989999999998875
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.30 E-value=0.96 Score=48.49 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=55.1
Q ss_pred eEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhccccccCHHHHHHH
Q 006876 75 GLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDYLKQLLSLKHPQHMTKLTWEKVEDLKMEHCYIAPDYFSEAQL 154 (627)
Q Consensus 75 GLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~yL~~lL~~r~~~~~~~~~~~~ve~IKE~~CyVa~Dy~~E~~~ 154 (627)
.+|+|+|+..|.+.-+++|+++. .+..++||+++|.-+.+..+. +.+..+++|... -.+.||..+.-.
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly--~r~~~~g~~Qlt~~i~r~~~L---------~~~~a~~~k~~~-~~P~~y~~~vl~ 262 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILY--TREVPVGTDQLTQEIQRAYSL---------TEEKAEEIKRGG-TLPTDYGSEVLR 262 (354)
T ss_pred heeeeecccceEEEEEECCeeee--EeeccCcHHHHHHHHHHHhCC---------ChhHhHHHHhCC-CCCCchhHHHHH
Confidence 35999999999999999999998 578999999999999887643 566778888764 346688877643
No 50
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=88.50 E-value=0.19 Score=50.29 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=54.7
Q ss_pred HhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHHH
Q 006876 43 LFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITDY 113 (627)
Q Consensus 43 LFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~y 113 (627)
+.|.-+...++....+.++.+-.+ .+.|.|||+|.++|-|.-+-.|.+++.+ --+.||.|+|-.
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~-----l~dg~VVDiGGGTTGIsi~kkGkViy~A--DEpTGGtHmtLv 178 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQ-----LDDGGVVDIGGGTTGISIVKKGKVIYSA--DEPTGGTHMTLV 178 (277)
T ss_pred eecccCceeeeecCCchhHHHHhc-----cCCCcEEEeCCCcceeEEEEcCcEEEec--cCCCCceeEEEE
Confidence 467788888999999999999888 8999999999999999999999998854 357899887543
No 51
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=85.54 E-value=0.42 Score=49.91 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=40.8
Q ss_pred CCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876 543 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 595 (627)
Q Consensus 543 ~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA 595 (627)
.+|+++||.+.-+|+...|+++|... ...+.|..+++|++..-+||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 47999999999999999999998532 124556667899999999998875
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=84.40 E-value=1.2 Score=50.18 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=34.3
Q ss_pred CcceEEEecCCCceeeeeeecCeecccCeEEecccHHHHHH
Q 006876 72 NKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHITD 112 (627)
Q Consensus 72 ~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~lt~ 112 (627)
....++||+|.++|++.-+.+|.++. ...+++||+++|.
T Consensus 145 e~gVa~IDIGgGTT~iaVf~~G~l~~--T~~l~vGG~~IT~ 183 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFDAGKVID--TACLNVGGRLIET 183 (475)
T ss_pred cCceEEEEeCCCceEEEEEECCEEEE--EEEEecccceEEE
Confidence 45689999999999999999999887 5679999999864
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=84.28 E-value=0.41 Score=52.79 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=42.6
Q ss_pred hccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 596 (627)
Q Consensus 540 ~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs 596 (627)
.+-..|+++||.+..+|+...|.+.|. .+|+.+++|++..-+||+++|+
T Consensus 354 ~i~~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 354 DVREPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCCcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 455669999999999999999998874 4677799999999999999985
No 54
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=83.79 E-value=0.66 Score=51.10 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=43.6
Q ss_pred hccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 595 (627)
Q Consensus 540 ~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA 595 (627)
.+-..|+++||.+.-+||...|.+.|..-.+ ..+|+.+++|++..-+||+++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 3457899999999999999999998864322 2467778999999999999875
No 55
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=82.47 E-value=0.47 Score=50.32 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=40.7
Q ss_pred hccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEe-eCCCCccceeeccccccC
Q 006876 540 RLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVV-RALDPVLDAWRGASVYAT 596 (627)
Q Consensus 540 ~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~-~~~~~~~saW~GgsilAs 596 (627)
.+-..|+++||.+.-||+...|++.|.. .|. .+++|++..-+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 4667899999999999999999998842 333 366899999999999984
No 56
>PRK13317 pantothenate kinase; Provisional
Probab=82.36 E-value=0.57 Score=49.36 Aligned_cols=73 Identities=18% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCccHHHHHhcccCCCCChhhHHhccCCeEEec-CCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876 517 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTG-GCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 595 (627)
Q Consensus 517 ~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtG-G~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA 595 (627)
.||..+|.+.|..+ +|-. .|..-..+|+++| |.+..|++.++|.+.+.- ..++++.+++++|..-+||++++
T Consensus 200 asl~~~v~~~I~~l-A~~~-ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a 272 (277)
T PRK13317 200 AGVIGLVGEVITTL-SIQA-AREKNIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLA 272 (277)
T ss_pred HHHHHHHHHHHHHH-HHHH-HHhcCCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHh
Confidence 35666666666542 1111 1323348999999 799999999999987653 23577888999999999999876
Q ss_pred C
Q 006876 596 T 596 (627)
Q Consensus 596 s 596 (627)
.
T Consensus 273 ~ 273 (277)
T PRK13317 273 T 273 (277)
T ss_pred h
Confidence 4
No 57
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=78.16 E-value=0.71 Score=53.17 Aligned_cols=84 Identities=26% Similarity=0.398 Sum_probs=53.5
Q ss_pred cEEEcCccccc-ccccCcCCCCCCCCCCCccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhc
Q 006876 491 FQIVLGVERFR-CPEILFRPNWVGIDQVGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR 569 (627)
Q Consensus 491 ~~I~lg~Erf~-~pE~LF~Psl~g~~~~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~ 569 (627)
..+.|+.+.|. ..+-+|+ .+..+|..++... . ....-...|+|+||+|.+|.+.+.|..-+..
T Consensus 291 ~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~---~--~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~-- 354 (602)
T PF00012_consen 291 FSITITREEFEELCEPLLE---------RIIEPIEKALKDA---G--LKKEDIDSVLLVGGSSRIPYVQEALKELFGK-- 354 (602)
T ss_dssp EEEEEEHHHHHHHTHHHHH---------HTHHHHHHHHHHT---T----GGGESEEEEESGGGGSHHHHHHHHHHTTS--
T ss_pred cccccccceeccccccccc---------ccccccccccccc---c--ccccccceeEEecCcccchhhhhhhhhcccc--
Confidence 45666666553 2222332 3566677777643 1 1233357899999999999999988765431
Q ss_pred CCCCCeeEeeCCCCccceeeccccccC
Q 006876 570 PCGAPIKVVRALDPVLDAWRGASVYAT 596 (627)
Q Consensus 570 p~~~~v~V~~~~~~~~saW~GgsilAs 596 (627)
.+....+|..++-.||+++|.
T Consensus 355 ------~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 355 ------KISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp ------EEB-SS-TTTHHHHHHHHHHH
T ss_pred ------ccccccccccccccccccchh
Confidence 344555788889999999875
No 58
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=76.93 E-value=1.5 Score=45.10 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=35.7
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccc
Q 006876 544 SILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVY 594 (627)
Q Consensus 544 NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~Ggsil 594 (627)
.|+|+||.+..|++.++|.+.|. +.|..++++.+.+-+|++++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 79999999999999999998872 45667788887777888753
No 59
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=73.98 E-value=11 Score=34.33 Aligned_cols=59 Identities=29% Similarity=0.322 Sum_probs=39.8
Q ss_pred EEEecCCCceeeeeeecCeecccCeEEeccc--------HHHHH--HHHHHHHhccCCCCCCcccHHHHHHH-HHhcccc
Q 006876 76 LAICPGFSTTHVIPFVEGEPVYRGSCRTNIG--------GYHIT--DYLKQLLSLKHPQHMTKLTWEKVEDL-KMEHCYI 144 (627)
Q Consensus 76 LVVDiG~~~T~IvPV~dG~~i~~a~~rl~iG--------G~~lt--~yL~~lL~~r~~~~~~~~~~~~ve~I-KE~~CyV 144 (627)
++||+|.+.|.++-...|..-. ...+++| |.+++ +-+.+-|.. ....++++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 6899999999998887776655 7789999 99999 778777754 44567777 6665544
Q ss_pred c
Q 006876 145 A 145 (627)
Q Consensus 145 a 145 (627)
.
T Consensus 71 ~ 71 (120)
T PF14450_consen 71 Y 71 (120)
T ss_dssp -
T ss_pred E
Confidence 3
No 60
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=73.64 E-value=9.3 Score=45.15 Aligned_cols=99 Identities=12% Similarity=-0.023 Sum_probs=69.7
Q ss_pred cEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccc--cC---ccCcceEEEecCCCceeeeeeecCeec
Q 006876 22 PVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQ--YG---ICNKDGLAICPGFSTTHVIPFVEGEPV 96 (627)
Q Consensus 22 pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~--~~---~~~~tGLVVDiG~~~T~IvPV~dG~~i 96 (627)
.++||.|++.....|..+.+.- .-.|+.-++++++...+...+|- .+ ...+.-+|-|+|.+.|++.-|.--.+-
T Consensus 160 d~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~ 238 (902)
T KOG0104|consen 160 DMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVK 238 (902)
T ss_pred heEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeec
Confidence 5999999999999999888753 34567778889998777776661 11 113456899999999987766332111
Q ss_pred c-------cCeE------EecccHHHHHHHHHHHHhcc
Q 006876 97 Y-------RGSC------RTNIGGYHITDYLKQLLSLK 121 (627)
Q Consensus 97 ~-------~a~~------rl~iGG~~lt~yL~~lL~~r 121 (627)
. ..+. -..+||..++..|+.+|...
T Consensus 239 ~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 239 TKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANE 276 (902)
T ss_pred cccccCccceEEEEeeccCCccchHHHHHHHHHHHHHH
Confidence 1 1111 24689999999999988754
No 61
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=73.13 E-value=12 Score=39.14 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=58.4
Q ss_pred cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehh---hhhhhhhccccCccCcceEEEecCCCceeeeeeecCeec
Q 006876 20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVD---AAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPV 96 (627)
Q Consensus 20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~---a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i 96 (627)
...++-|. .+-.-.++..+.+-+.+..|++ +-++.. +.+++.|.-..-....+++|||+|.++|.++.+-+|.+.
T Consensus 58 ~i~~vATs-A~R~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~ 135 (285)
T PF02541_consen 58 KIRAVATS-ALREAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV 135 (285)
T ss_dssp EEEEEEEH-HHHHSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE
T ss_pred EEEEEhhH-HHHhCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee
Confidence 33344443 4444556777888888889987 444433 344333321000125789999999999999999998887
Q ss_pred ccCeEEecccHHHHHHHH
Q 006876 97 YRGSCRTNIGGYHITDYL 114 (627)
Q Consensus 97 ~~a~~rl~iGG~~lt~yL 114 (627)
. ...+|+|.-.+++.+
T Consensus 136 ~--~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 136 F--SQSLPLGAVRLTERF 151 (285)
T ss_dssp E--EEEES--HHHHHHHH
T ss_pred E--eeeeehHHHHHHHHH
Confidence 6 678999999887766
No 62
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=72.36 E-value=1.6 Score=47.64 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=40.4
Q ss_pred eEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876 545 ILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 596 (627)
Q Consensus 545 IvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs 596 (627)
||++||++...|+..-|.+.+. .+|+.|+++++..-+||+++|+
T Consensus 346 iv~~GGva~n~av~~ale~~lg--------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG--------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC--------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999999998875 5788999999999999999986
No 63
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=66.52 E-value=2.6 Score=47.06 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=39.3
Q ss_pred HhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEee----CCCCccceeeccccccCc
Q 006876 539 QRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVR----ALDPVLDAWRGASVYATK 597 (627)
Q Consensus 539 ~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~----~~~~~~saW~GgsilAsl 597 (627)
..+.+.||||||++++||+.+-...=+......+.+..+.- ..+|.|++-+|.-.++..
T Consensus 318 ~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 318 NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence 56778999999999999998765544432221122222222 346899999998877764
No 64
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=66.19 E-value=21 Score=41.68 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=68.5
Q ss_pred cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccC--ccCcceEEEecCCCceeeeeee--cCee
Q 006876 20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYG--ICNKDGLAICPGFSTTHVIPFV--EGEP 95 (627)
Q Consensus 20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~--~~~~tGLVVDiG~~~T~IvPV~--dG~~ 95 (627)
-..+++|.|......+|..+-.. -.-.+++.+-+++.+.++..++|-.. ....+=||.|.|.+...|.++. +|.-
T Consensus 143 v~~aviTVPa~F~~~Qr~at~~A-~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~ 221 (620)
T KOG0101|consen 143 VKKAVVTVPAYFNDSQRAATKDA-ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIF 221 (620)
T ss_pred eeeEEEEecCCcCHHHHHHHHHH-HHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchh
Confidence 34689999999888888766554 33567788899999999888877211 1123459999999998776663 3421
Q ss_pred ccc-CeEEecccHHHHHHHHHHHHh
Q 006876 96 VYR-GSCRTNIGGYHITDYLKQLLS 119 (627)
Q Consensus 96 i~~-a~~rl~iGG~~lt~yL~~lL~ 119 (627)
... ...-.++||.++++.|...+.
T Consensus 222 ~vkat~gd~~lGGedf~~~l~~h~~ 246 (620)
T KOG0101|consen 222 EVKATAGDTHLGGEDFDNKLVNHFA 246 (620)
T ss_pred hhhhhcccccccchhhhHHHHHHHH
Confidence 222 223368999998888876553
No 65
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=65.21 E-value=4 Score=43.94 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=22.8
Q ss_pred ccCCeEEecCCCCCcChHHHHHHHHH
Q 006876 541 LTSSILMTGGCCLFPGMSERLEAGIR 566 (627)
Q Consensus 541 L~~NIvLtGG~s~ipGf~eRL~~EL~ 566 (627)
-.+.|+||||++.+|||.+-|..+|.
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred CCCEEEEECCccchhhHHHHHHHHHC
Confidence 46779999999999999999999986
No 66
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=60.62 E-value=7.9 Score=40.97 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=20.4
Q ss_pred CcceEEEecCCCceeeeeeecCeecc
Q 006876 72 NKDGLAICPGFSTTHVIPFVEGEPVY 97 (627)
Q Consensus 72 ~~tGLVVDiG~~~T~IvPV~dG~~i~ 97 (627)
..++++||+|..+|.|.+|.+|.|..
T Consensus 76 ~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 76 LENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp -SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCEEEEeCCCCEEEEEEEECCeeec
Confidence 67899999999999999999999853
No 67
>PRK11678 putative chaperone; Provisional
Probab=58.79 E-value=3.3 Score=46.62 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=33.6
Q ss_pred CCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876 543 SSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 596 (627)
Q Consensus 543 ~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs 596 (627)
..|+||||+|.+|++.+.|...+-. ..|. ..++-.++-.|.++.|.
T Consensus 401 d~VvLvGGsSriP~V~~~l~~~fg~-------~~v~-~g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 401 DVIYLTGGSARSPLIRAALAQQLPG-------IPIV-GGDDFGSVTAGLARWAQ 446 (450)
T ss_pred CEEEEcCcccchHHHHHHHHHHCCC-------CcEE-eCCCcchHHHHHHHHHH
Confidence 5799999999999999998876532 1232 23666777778877763
No 68
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=56.36 E-value=6.8 Score=40.92 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.5
Q ss_pred CcceEEEecCCCceeeeeeecCe
Q 006876 72 NKDGLAICPGFSTTHVIPFVEGE 94 (627)
Q Consensus 72 ~~tGLVVDiG~~~T~IvPV~dG~ 94 (627)
..+++.||+|..+|.|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 56899999999999999999997
No 69
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=56.09 E-value=33 Score=40.41 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=71.9
Q ss_pred cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhcccc--C-----ccCcceEEEecCCCceeeeee--
Q 006876 20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQY--G-----ICNKDGLAICPGFSTTHVIPF-- 90 (627)
Q Consensus 20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~--~-----~~~~tGLVVDiG~~~T~IvPV-- 90 (627)
-.+++|..|.+.....|..++...= .-|+.-+.++++..++..++|-. . ....+-+.||+||+.+++.-+
T Consensus 137 v~DcvIavP~~FTd~qRravldAA~-iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF 215 (727)
T KOG0103|consen 137 VSDCVIAVPSYFTDSQRRAVLDAAR-IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF 215 (727)
T ss_pred CCCeeEeccccccHHHHHHHHhHHh-hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee
Confidence 4568999999999999999887643 56888899999877777777621 1 112457899999999876544
Q ss_pred ecCeecc-cCeEEecccHHHHHHHHHHHHhcc
Q 006876 91 VEGEPVY-RGSCRTNIGGYHITDYLKQLLSLK 121 (627)
Q Consensus 91 ~dG~~i~-~a~~rl~iGG~~lt~yL~~lL~~r 121 (627)
--|..-. ....--.+||++.+..|.+.+...
T Consensus 216 ~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 216 TKGKLKVLATAFDRKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred ccCcceeeeeecccccccchHHHHHHHHHHHH
Confidence 2243222 223334799999998888887653
No 70
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=51.92 E-value=2.9 Score=43.23 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=44.3
Q ss_pred ccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876 519 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 595 (627)
Q Consensus 519 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA 595 (627)
|.+.+...+.++. + .-..|+|+||...-..+...|...|.+..+.. .+..+..|.+.+..||.++|
T Consensus 206 la~~i~~~~~~~~--~------~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRLG--P------EKEPVVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTCT--C------CCCSEEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--C------CCCeEEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 6666766666542 1 11129999999888778777766666655433 33345578999999998875
No 71
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=51.43 E-value=10 Score=40.60 Aligned_cols=26 Identities=12% Similarity=0.364 Sum_probs=23.6
Q ss_pred ccCCeEEecCCCCCcChHHHHHHHHH
Q 006876 541 LTSSILMTGGCCLFPGMSERLEAGIR 566 (627)
Q Consensus 541 L~~NIvLtGG~s~ipGf~eRL~~EL~ 566 (627)
..+.|+||||++.++||.+-|++++.
T Consensus 282 ~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 282 SLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred ccceEEEECccccchhHHHHHHHHHC
Confidence 35779999999999999999999886
No 72
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=47.95 E-value=16 Score=39.32 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=49.5
Q ss_pred CcccEEEEeCCC----CChHHHHHHHHHHhhhcCCCeEEeehhh-hhh----------hhhcccc------CccCcceEE
Q 006876 19 IDHPVLITECVC----NPVHSRSKMAELLFETYGVPSVAFGVDA-AFS----------YKYNQQY------GICNKDGLA 77 (627)
Q Consensus 19 ~d~pVLLTEp~~----~p~~~Rekl~EvLFE~f~vpsv~~~~~a-~ls----------lya~G~~------~~~~~tGLV 77 (627)
..+.|.||--.. +-..--..++..+-+.|+-+-.++..+. +++ +.++|.- .....++|+
T Consensus 53 ~~~avtMTgELaD~f~~r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~ 132 (318)
T TIGR03123 53 DNVAVTMTGELADCFEDKAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLF 132 (318)
T ss_pred ceEEEEeehhhhhhhcCHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEE
Confidence 467777776433 2244455677788888866543333332 222 1111100 012578999
Q ss_pred EecCCCceeeeeeecCeeccc
Q 006876 78 ICPGFSTTHVIPFVEGEPVYR 98 (627)
Q Consensus 78 VDiG~~~T~IvPV~dG~~i~~ 98 (627)
||+|..+|.|+||.+|.+...
T Consensus 133 ~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 133 VDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred EEcCccceeeEEecCCEeeee
Confidence 999999999999999998753
No 73
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=46.56 E-value=2.1e+02 Score=26.30 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=29.4
Q ss_pred HHhhhhHHHHHHhhhhcCCCcHHHHHH---HHHHHHHHHHhh
Q 006876 229 QLEQVEENDIAAFLSDTGYVSRQEIES---TLVKLTQSLRKA 267 (627)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~~~~~~~~~---~i~~~~~~~~~~ 267 (627)
.+++.-...+..+|..+|+++.+|++. .|..|...|..-
T Consensus 74 ~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 74 KLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555678889999999999998865 777777776543
No 74
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=45.11 E-value=1e+02 Score=32.88 Aligned_cols=102 Identities=22% Similarity=0.112 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCceeeeeeec-CeecccCeEEecccHHHH
Q 006876 32 PVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVE-GEPVYRGSCRTNIGGYHI 110 (627)
Q Consensus 32 p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~d-G~~i~~a~~rl~iGG~~l 110 (627)
.+-.-+.+++-|=+.++++.-.-+..+-++..+.-..-+....-.|+|+|.++|...-|-. |.+. ...+-=+|.-+
T Consensus 93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~---~iHlAGAG~mV 169 (332)
T PF08841_consen 93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT---AIHLAGAGNMV 169 (332)
T ss_dssp SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE---EEEEE-SHHHH
T ss_pred ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE---EEEecCCchhh
Confidence 3444567889999999999888889999988876410001123479999999998654422 3221 22334456777
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHh-cccc
Q 006876 111 TDYLKQLLSLKHPQHMTKLTWEKVEDLKME-HCYI 144 (627)
Q Consensus 111 t~yL~~lL~~r~~~~~~~~~~~~ve~IKE~-~CyV 144 (627)
|-.+..-|-. -+..+.++||.- +|-|
T Consensus 170 TmlI~sELGl--------~d~~lAE~IKkyPlaKV 196 (332)
T PF08841_consen 170 TMLINSELGL--------EDRELAEDIKKYPLAKV 196 (332)
T ss_dssp HHHHHHHCT---------S-HHHHHHHHHS-EEEE
T ss_pred HHHHHHhhCC--------CCHHHHHHhhhcchhhh
Confidence 7766655532 277899999875 4443
No 75
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=44.29 E-value=66 Score=36.77 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=56.5
Q ss_pred EEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehh---hhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCe
Q 006876 24 LITECVCNPVHSRSKMAELLFETYGVPSVAFGVD---AAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGS 100 (627)
Q Consensus 24 LLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~---a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~ 100 (627)
++..+.+=.-.++..+.+-+.+..|++ |-+++. +-++++|.-..-....+++|||+|.++|-++-+-+|.+.. .
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~ 157 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATS--L 157 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceee--e
Confidence 333344445566777777778888886 444433 4444333220000123589999999999999888887654 5
Q ss_pred EEecccHHHHHHHH
Q 006876 101 CRTNIGGYHITDYL 114 (627)
Q Consensus 101 ~rl~iGG~~lt~yL 114 (627)
..+++|.-.+++.+
T Consensus 158 ~Sl~lG~vrl~e~f 171 (496)
T PRK11031 158 FSLSMGCVTWLERY 171 (496)
T ss_pred eEEeccchHHHHHh
Confidence 78999998876554
No 76
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=39.76 E-value=52 Score=34.84 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=58.4
Q ss_pred cccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehh---hhhhhhhccccCccCcceEEEecCCCceeeeeeecCeec
Q 006876 20 DHPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVD---AAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPV 96 (627)
Q Consensus 20 d~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~---a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i 96 (627)
+..++-|. .+-.-.+++.+.+.+....|++ +-+... +.+++.+.-. .-...+++|||+|.++|.++-+-+|.+.
T Consensus 72 ~i~~vaTs-a~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~-~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 72 EVRAVATA-ALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAH-TLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred eEEEEEcH-HHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHh-CCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 44444444 4444567778888888877875 444443 3443333210 0113457999999999999988777665
Q ss_pred ccCeEEecccHHHHHHHH
Q 006876 97 YRGSCRTNIGGYHITDYL 114 (627)
Q Consensus 97 ~~a~~rl~iGG~~lt~yL 114 (627)
. ...+|+|...+++.+
T Consensus 149 ~--~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 149 E--GVSLPLGCVRLTEQF 164 (300)
T ss_pred E--EEEEccceEEhHHhh
Confidence 3 678999998887765
No 77
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=34.26 E-value=15 Score=39.85 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=31.4
Q ss_pred cCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876 542 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 596 (627)
Q Consensus 542 ~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs 596 (627)
+.+|+|+||+|.+ |.+.|+ ...| ++...++|+++--.|.-.++.
T Consensus 292 ~d~IiL~GGGA~l--l~~~lk----~~f~-----~~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 292 FDRVIVTGGGANI--FFDSLS----HWYS-----DVEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCEEEEECCcHHH--HHHHHH----HHcC-----CeEEcCChHHHHHHHHHHHHH
Confidence 6789999999987 444444 4444 235567899988888777664
No 78
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=33.65 E-value=34 Score=34.77 Aligned_cols=41 Identities=24% Similarity=0.524 Sum_probs=29.7
Q ss_pred cCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeec
Q 006876 542 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRG 590 (627)
Q Consensus 542 ~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~G 590 (627)
..-++|+||.+++||+.+-++++| . .+|+.|..|.|..=+|
T Consensus 227 i~dl~lvGGac~~~g~e~~Fe~~l-~-------l~v~~P~~p~y~TPLg 267 (277)
T COG4820 227 ITDLWLVGGACMQPGVEELFEKQL-A-------LQVHLPQHPLYMTPLG 267 (277)
T ss_pred CcceEEecccccCccHHHHHHHHh-c-------cccccCCCcceechhh
Confidence 567899999999999999999998 3 2455444444444333
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.20 E-value=1.1e+03 Score=28.99 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHH
Q 006876 186 EIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLR 265 (627)
Q Consensus 186 e~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 265 (627)
|..+.+++-++-..|=..-.+.+..++-.++|.+|..--.++.+.+...
T Consensus 343 eree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEer------------------------------- 391 (1118)
T KOG1029|consen 343 EREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEER------------------------------- 391 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Q ss_pred hhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 006876 266 KAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERR 345 (627)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~ 345 (627)
|..-+.|..+|.+-+.+|..+=|..|+.|
T Consensus 392 ------------------------------------------------kkeie~rEaar~ElEkqRqlewErar~qe--- 420 (1118)
T KOG1029|consen 392 ------------------------------------------------KKEIERREAAREELEKQRQLEWERARRQE--- 420 (1118)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHhhhhhhccCCCCCCCCCCCch
Q 006876 346 LENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDE 425 (627)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~~d~ 425 (627)
-+..+..+.+.+...-...+.+..++
T Consensus 421 ------m~~Qk~reqe~iv~~nak~~ql~~el------------------------------------------------ 446 (1118)
T KOG1029|consen 421 ------MLNQKNREQEWIVYLNAKKKQLQQEL------------------------------------------------ 446 (1118)
T ss_pred ------HHhhhhHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Q ss_pred hhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhh
Q 006876 426 DWQLYKLMSRDNDDDDEEMDENEAELARISARLQE 460 (627)
Q Consensus 426 ~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 460 (627)
+..+..+..|++.|.+
T Consensus 447 -------------------etLn~k~qqls~kl~D 462 (1118)
T KOG1029|consen 447 -------------------ETLNFKLQQLSGKLQD 462 (1118)
T ss_pred -------------------HHHHHHHHHHhhhhhh
No 80
>PRK10854 exopolyphosphatase; Provisional
Probab=30.89 E-value=98 Score=35.51 Aligned_cols=86 Identities=10% Similarity=0.034 Sum_probs=55.7
Q ss_pred EEeCCCCChHHHHHHHHHHhhhcCCCeEEeehh---hhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeE
Q 006876 25 ITECVCNPVHSRSKMAELLFETYGVPSVAFGVD---AAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSC 101 (627)
Q Consensus 25 LTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~---a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~ 101 (627)
+.-+.+=.-.++..+.+-+.+..|++ |-+++. +-+++.|.-..-....+++|||+|.++|.++-+-+|.+.. ..
T Consensus 87 vATsAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~ 163 (513)
T PRK10854 87 VGTHTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VE 163 (513)
T ss_pred EehHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--eE
Confidence 33334445556777777778878886 444433 4444443320000124689999999999999998887654 55
Q ss_pred EecccHHHHHHH
Q 006876 102 RTNIGGYHITDY 113 (627)
Q Consensus 102 rl~iGG~~lt~y 113 (627)
.+++|.-.+++.
T Consensus 164 S~~lG~vrl~e~ 175 (513)
T PRK10854 164 SRRMGCVSFAQL 175 (513)
T ss_pred EEecceeeHHhh
Confidence 679999888774
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.69 E-value=1.3e+03 Score=29.76 Aligned_cols=185 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHH-HhhhhcCCCcHHHHHHHHHHHHH
Q 006876 184 EEEIARKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIA-AFLSDTGYVSRQEIESTLVKLTQ 262 (627)
Q Consensus 184 ~ee~~~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~i~~~~~ 262 (627)
+++++.+++.=++.. +.+++-..+.-.-+++--.++...++.+++....-+. +.+..--=-...+|+..+.+|+.
T Consensus 1558 A~~v~~~ae~V~eaL----~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1558 AEDVKGQAEDVVEAL----EEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 006876 263 SLRKAKGERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEE 342 (627)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~ 342 (627)
+......+. |-.++...+.......+++.-
T Consensus 1634 ~~~qns~~A-----------------------------------~~a~~~a~sa~~~A~~a~q~~--------------- 1663 (1758)
T KOG0994|consen 1634 KAAQNSAEA-----------------------------------KQAEKTAGSAKEQALSAEQGL--------------- 1663 (1758)
T ss_pred HHHhccHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHhhhhhhccCCCCCCCCCC
Q 006876 343 ERRLENPELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGA 422 (627)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~~~rm~~~~~~~~~~~~~~d~fg~ 422 (627)
.-+.+.....+.|.+++-++ |.++++|...+-+-|.+ -++.
T Consensus 1664 --------~~lq~~~~~~~~l~~~r~~g-------------------------~~~ar~rAe~L~~eA~~------Ll~~ 1704 (1758)
T KOG0994|consen 1664 --------EILQKYYELVDRLLEKRMEG-------------------------SQAARERAEQLRTEAEK------LLGQ 1704 (1758)
T ss_pred --------HHHHHHHHHHHHHHHHHhhc-------------------------chhHHHHHHHHHHHHHH------HHHH
Q ss_pred CchhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhc
Q 006876 423 KDEDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEV 461 (627)
Q Consensus 423 ~d~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 461 (627)
.-+-.+..++++..-+...-..++-..+|..|+++++..
T Consensus 1705 a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1705 ANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
No 82
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.50 E-value=1.2e+02 Score=33.97 Aligned_cols=96 Identities=15% Similarity=0.034 Sum_probs=59.5
Q ss_pred cEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhcccc-CccCcceEEEecCCCceee--eeeecCee-cc
Q 006876 22 PVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQY-GICNKDGLAICPGFSTTHV--IPFVEGEP-VY 97 (627)
Q Consensus 22 pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~-~~~~~tGLVVDiG~~~T~I--vPV~dG~~-i~ 97 (627)
..++|.|.+....+|+..-..= ---+..-+.+++.|.+|..++|-. .....+-||.|.|.++-.| +.|-+|.- +.
T Consensus 174 ~AVvTvPAYFNDAQrQATKDAG-tIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVl 252 (663)
T KOG0100|consen 174 HAVVTVPAYFNDAQRQATKDAG-TIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVL 252 (663)
T ss_pred ceEEecchhcchHHHhhhcccc-eeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEE
Confidence 4678888888888887654321 123455577889999888888722 1224577999999987644 34444422 11
Q ss_pred cCeEEecccHHHHHHHHHHHH
Q 006876 98 RGSCRTNIGGYHITDYLKQLL 118 (627)
Q Consensus 98 ~a~~rl~iGG~~lt~yL~~lL 118 (627)
...--..+||.+.++...+.+
T Consensus 253 aTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 253 ATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred ecCCCcccCccchHHHHHHHH
Confidence 112235789987666554443
No 83
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=30.30 E-value=1.7e+02 Score=31.49 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=5.9
Q ss_pred hhhhhhhcc
Q 006876 58 AAFSYKYNQ 66 (627)
Q Consensus 58 a~lslya~G 66 (627)
..+++|++|
T Consensus 67 ~~f~~yaTG 75 (321)
T PF07946_consen 67 NEFTFYATG 75 (321)
T ss_pred ceEEEEEeC
Confidence 355677777
No 84
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.44 E-value=27 Score=38.77 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=35.5
Q ss_pred ChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccccccC
Q 006876 534 DEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYAT 596 (627)
Q Consensus 534 ~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilAs 596 (627)
|.++++.=..-|||+||++.||-..+-|+.=+...-|+ ..-+|.-++-.||++-|.
T Consensus 355 Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKeps-------kGinPdEAVAYGAAVQaG 410 (663)
T KOG0100|consen 355 DSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPS-------KGINPDEAVAYGAAVQAG 410 (663)
T ss_pred hcCcccccCceEEEecCcccChhHHHHHHHHhCCCCcc-------CCCChHHHHHhhhhhhhc
Confidence 66777777888999999999998776665444332221 111455555556665543
No 85
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.74 E-value=3.8e+02 Score=27.06 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=51.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHHHhhhhcCCCcHHHHHHHHHH
Q 006876 191 AAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVK 259 (627)
Q Consensus 191 ~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 259 (627)
+++++-...|.+.+++..++.+-...|..-..++..+.+.++-+.+....+=.+.+|=+.+.|+..|..
T Consensus 118 a~N~~~~~~R~~Rla~~~~E~~~~i~ee~~~~~e~~~a~k~qae~eVl~~iersknfITReNLea~Ie~ 186 (227)
T KOG4691|consen 118 AENRRLHELRIARLAQEEREQEQRIAEEQARKAEEVQAWKQQAEREVLQLIERSKNFITRENLEARIEA 186 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHH
Confidence 455555566666777777777777777777777888888888777777777778899999999887765
No 86
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=28.37 E-value=50 Score=34.36 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=44.9
Q ss_pred ccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876 519 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 595 (627)
Q Consensus 519 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA 595 (627)
|...+.+.+.-+ + ...|||.||.+..+.|-+++.+.+..+ +....+.|..+.....++-+||+.++
T Consensus 221 la~~l~~l~~~~---d-------pe~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 221 IARLIADLKATL---D-------CQCVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHh---C-------CCEEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECccCCchhhhhHHHHh
Confidence 666666666644 2 246888888877777888888888765 32225666666666677777887765
No 87
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=28.16 E-value=1.8e+02 Score=33.18 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=60.9
Q ss_pred HHHHHhhcCCCCCC-CcccEEEEeCCCCChHHHHHHHHHHhhhcC---CCeEEeehhhhhhhhhccccC---ccCcceEE
Q 006876 5 LDFAFDRLGANGSE-IDHPVLITECVCNPVHSRSKMAELLFETYG---VPSVAFGVDAAFSYKYNQQYG---ICNKDGLA 77 (627)
Q Consensus 5 wd~if~~L~v~~~p-~d~pVLLTEp~~~p~~~Rekl~EvLFE~f~---vpsv~~~~~a~lslya~G~~~---~~~~tGLV 77 (627)
...-|++-|+.+.. ..-.|++|--. .-+.+=+.+.+.|=+..| |...----.+++|-.++|... ....+-+=
T Consensus 69 v~~eY~~Agi~p~~I~TGAVIITGET-ArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~N 147 (473)
T PF06277_consen 69 VEEEYRKAGITPEDIDTGAVIITGET-ARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVAN 147 (473)
T ss_pred HHHHHHHcCCCHHHCccccEEEecch-hhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEE
Confidence 33335566777211 23456666532 233333445555544333 111111123678888887431 22455566
Q ss_pred EecCCCceeeeeeecCeecccCeEEecccHHHH
Q 006876 78 ICPGFSTTHVIPFVEGEPVYRGSCRTNIGGYHI 110 (627)
Q Consensus 78 VDiG~~~T~IvPV~dG~~i~~a~~rl~iGG~~l 110 (627)
||+|.++|.++-+-+|.++. +..+++|||.+
T Consensus 148 iDIGGGTtN~avf~~G~v~~--T~cl~IGGRLi 178 (473)
T PF06277_consen 148 IDIGGGTTNIAVFDNGEVID--TACLDIGGRLI 178 (473)
T ss_pred EEeCCCceeEEEEECCEEEE--EEEEeeccEEE
Confidence 89999999999999999987 45689999864
No 88
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=28.09 E-value=8.3e+02 Score=30.82 Aligned_cols=9 Identities=22% Similarity=-0.112 Sum_probs=4.6
Q ss_pred eEEEecCCC
Q 006876 75 GLAICPGFS 83 (627)
Q Consensus 75 GLVVDiG~~ 83 (627)
.-++|.|.+
T Consensus 181 VKLsDFGlA 189 (1021)
T PTZ00266 181 AKIGDFGLS 189 (1021)
T ss_pred eEEccCCcc
Confidence 345566643
No 89
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=26.04 E-value=4e+02 Score=31.09 Aligned_cols=211 Identities=20% Similarity=0.157 Sum_probs=108.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHhhh
Q 006876 189 RKAAIKERQGQRLREMAEAKRSSRINELENQIHGLEFLLQQLEQVEENDIAAFLSDTGYVSRQEIESTLVKLTQSLRKAK 268 (627)
Q Consensus 189 ~~~~~r~~~~~rl~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 268 (627)
+|+++|.+...||..+-+-...++..+.|++|..|.+++ .++....++.+.+..++++..-+.+....+...++-++.
T Consensus 282 ~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq--~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas 359 (645)
T KOG0681|consen 282 KKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQ--GEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKAS 359 (645)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhh--hchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhh
Confidence 344566555555555555444555669999999997655 555434447788888888744444555555555555443
Q ss_pred hhhhhhhhhhhhhhcccCCCCCcccCCCcccCHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Q 006876 269 GERKVEQAELEKTDASMNEKYPLIHIPDNMLSLEQLKEKRRQIFLKTTTEGRQRAKQKRVEEELEQEKKNQEEEERRLEN 348 (627)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~y~L~~ipd~~l~~eq~kekr~q~~~k~~~~~r~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 348 (627)
...-.- +.+=|++ + .+.+.+..+..-.+-=.++...+++.
T Consensus 360 ~dar~r--------------------------ar~eke~----------E----r~~k~~~~r~~~~~swl~e~r~k~~~ 399 (645)
T KOG0681|consen 360 TDARLR--------------------------ARVEKEL----------E----RLNKLEEEREENLISWLEELREKLEK 399 (645)
T ss_pred hhhhcc--------------------------ccccchH----------H----HhhcccccccccHHHHHHHHHHHHHH
Confidence 311000 0000000 0 00000000000011111222223333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCcccccHHHHHHHHhhhhhhccC-C-CCCC--CCCCCc
Q 006876 349 PELYVEQMRAKYKELSEKIDQRKRLKTNGNHTNGNNTSGGVGRGERLNAAQRERMRLLTTAAFDR-G-KGED--TFGAKD 424 (627)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~s~~~~~rm~~~~~~~~~~-~-~~~d--~fg~~d 424 (627)
.-+.++.+...+.++.++...+.+.+... ..|++...+.| +...+.+.|. | .++| .|
T Consensus 400 ller~~~kk~lk~e~~~r~s~~Sq~rmr~--------------~~~La~~~~~r-rk~~~~t~D~fg~~Dedw~vY---- 460 (645)
T KOG0681|consen 400 LLERISQKKRLKQELKDRKSHASQLRMRA--------------LARLAYEQVVR-RKRKEATPDNFGARDEDWDVY---- 460 (645)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHhhhHH--------------HHhhhHHHHHH-HhcccCCccccccchhhHHHH----
Confidence 44444444445555555555555555544 57888888888 7888888884 3 2232 44
Q ss_pred hhhHHHHhhcCCCCCCchHhhHHHHHHHHHHhhhhhcCCCCC
Q 006876 425 EDWQLYKLMSRDNDDDDEEMDENEAELARISARLQEVDPTFV 466 (627)
Q Consensus 425 ~~w~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~dp~f~ 466 (627)
++-+-+.+ .+.++....+.+|.+++-...++++.-.
T Consensus 461 e~lee~~~------~~~~dl~~l~~~L~e~Dp~F~~~~~~~~ 496 (645)
T KOG0681|consen 461 EDLEEENK------SILEDLKSLNHELLEFDPHFTQYVEGTT 496 (645)
T ss_pred HHhhhhhh------hHHHHHHHHHHHHHhhCccccccccccc
Confidence 22222211 0124456677888899999988885433
No 90
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=25.83 E-value=94 Score=35.65 Aligned_cols=84 Identities=15% Similarity=0.068 Sum_probs=51.1
Q ss_pred CCCChHHHHHHHHHHhhhcCCCeEEeeh--hhhhhhhhccccCccCcceEEEecCCCceeeeeeecCeecccCeEEeccc
Q 006876 29 VCNPVHSRSKMAELLFETYGVPSVAFGV--DAAFSYKYNQQYGICNKDGLAICPGFSTTHVIPFVEGEPVYRGSCRTNIG 106 (627)
Q Consensus 29 ~~~p~~~Rekl~EvLFE~f~vpsv~~~~--~a~lslya~G~~~~~~~tGLVVDiG~~~T~IvPV~dG~~i~~a~~rl~iG 106 (627)
.+=.-.+.......+-+.+|++-=.+.- .+-++.+|....-.....+||+|+|.++|-++-+-+..+.. ...+++|
T Consensus 83 A~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~G 160 (492)
T COG0248 83 ALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL--LISLPLG 160 (492)
T ss_pred HHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce--eEEeecc
Confidence 3333445555666666677876332222 25555554431101156899999999999998776554443 6778898
Q ss_pred HHHHHHHH
Q 006876 107 GYHITDYL 114 (627)
Q Consensus 107 G~~lt~yL 114 (627)
.-.+++..
T Consensus 161 ~v~lt~~~ 168 (492)
T COG0248 161 CVRLTERF 168 (492)
T ss_pred eEEeehhh
Confidence 87766554
No 91
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=25.38 E-value=2.4e+02 Score=32.75 Aligned_cols=119 Identities=10% Similarity=-0.016 Sum_probs=76.7
Q ss_pred ccEEEEeCCCCChHHHHHHHHHHhhhcCCCeEEeehhhhhhhhhccccCccCcceEEEecCCCce--eeeeeecCeeccc
Q 006876 21 HPVLITECVCNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQQYGICNKDGLAICPGFSTT--HVIPFVEGEPVYR 98 (627)
Q Consensus 21 ~pVLLTEp~~~p~~~Rekl~EvLFE~f~vpsv~~~~~a~lslya~G~~~~~~~tGLVVDiG~~~T--~IvPV~dG~~i~~ 98 (627)
...++|.|.+...++|+...... .-.+..-+-+++.+.++..++|-++....+-.|.|+|.++- .|.-|.+|.-.-.
T Consensus 161 ~~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 35789999999999998766543 34455556677888888888873322234567889998865 3444566644322
Q ss_pred -CeEEecccHHHHHHHHHHHHhccC---CCCCCcccHHHHHHHHHh
Q 006876 99 -GSCRTNIGGYHITDYLKQLLSLKH---PQHMTKLTWEKVEDLKME 140 (627)
Q Consensus 99 -a~~rl~iGG~~lt~yL~~lL~~r~---~~~~~~~~~~~ve~IKE~ 140 (627)
...-...||.+++.++..++-... .......+...+..|+|.
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~ea 285 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREA 285 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHH
Confidence 233467899999999998886432 122223345556666654
No 92
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=25.07 E-value=91 Score=27.83 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHH
Q 006876 182 PSEEEIARKAAIKERQGQRLREMA 205 (627)
Q Consensus 182 ~s~ee~~~~~~~r~~~~~rl~~~~ 205 (627)
+|++|++++.+|=+..-+||++++
T Consensus 73 VT~eDIr~QE~rVk~aR~RLaeAL 96 (96)
T PF14048_consen 73 VTEEDIRRQERRVKKARKRLAEAL 96 (96)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHC
Confidence 799999999988888888888763
No 93
>PTZ00121 MAEBL; Provisional
Probab=24.28 E-value=1.7e+03 Score=29.57 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHhhH
Q 006876 198 GQRLREMAEAKRSSR 212 (627)
Q Consensus 198 ~~rl~~~~~~~~~~~ 212 (627)
..|+.+.+++++..+
T Consensus 1138 ~~Rr~EeaRKrEeaR 1152 (2084)
T PTZ00121 1138 DARKAEEARKAEDAK 1152 (2084)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 94
>PTZ00121 MAEBL; Provisional
Probab=23.05 E-value=1.9e+03 Score=29.17 Aligned_cols=15 Identities=0% Similarity=-0.250 Sum_probs=8.3
Q ss_pred CcceEEEecCCCcee
Q 006876 72 NKDGLAICPGFSTTH 86 (627)
Q Consensus 72 ~~tGLVVDiG~~~T~ 86 (627)
..||||=+..+..++
T Consensus 997 KPTCvI~k~N~fsfT 1011 (2084)
T PTZ00121 997 KPTCVIDKENHFSFT 1011 (2084)
T ss_pred CccceecCcchhhhh
Confidence 456666666555443
No 95
>PRK09698 D-allose kinase; Provisional
Probab=22.10 E-value=77 Score=33.14 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=36.7
Q ss_pred CCeEEecCCCCCcC-hHHHHHHHHHhhcC---CCCCeeEeeCCCCccceeeccccccC
Q 006876 543 SSILMTGGCCLFPG-MSERLEAGIRMIRP---CGAPIKVVRALDPVLDAWRGASVYAT 596 (627)
Q Consensus 543 ~NIvLtGG~s~ipG-f~eRL~~EL~~l~p---~~~~v~V~~~~~~~~saW~GgsilAs 596 (627)
..|||.||.+..+. |.++|.+.++..+. ....+.|..+.....++-+||+.++-
T Consensus 238 ~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 238 DAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 55778888776654 57889888887653 13346666666666667778887654
No 96
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=22.06 E-value=65 Score=33.78 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=43.3
Q ss_pred ccHHHHHhcccCCCCChhhHHhccCCeEEecCCCCCcChHHHHHHHHHhhc-CCCCCeeEeeCCCCccceeecccccc
Q 006876 519 LDEMTGVSIRRLPTKDEDLEQRLTSSILMTGGCCLFPGMSERLEAGIRMIR-PCGAPIKVVRALDPVLDAWRGASVYA 595 (627)
Q Consensus 519 L~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG~s~ipGf~eRL~~EL~~l~-p~~~~v~V~~~~~~~~saW~GgsilA 595 (627)
|...|.+.+.-+ + -..|||.||.+..+-|-++|.+.+.... |...++.|..+.....++-+||+.++
T Consensus 233 la~~l~n~~~~l---d-------P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIV---D-------PHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHc---C-------CCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 555565655543 2 2568888887777888889998887643 32224556655555566667887665
No 97
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=21.79 E-value=6.8e+02 Score=23.59 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=25.6
Q ss_pred hhhhHHHHHHhhhhcCCCcHHHHHH---HHHHHHHHHHh
Q 006876 231 EQVEENDIAAFLSDTGYVSRQEIES---TLVKLTQSLRK 266 (627)
Q Consensus 231 ~~~~~~~~~~~l~~~~~~~~~~~~~---~i~~~~~~~~~ 266 (627)
++.-+..+..+|..+|++|..|++. .|..|...|..
T Consensus 89 E~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~ 127 (132)
T PF05597_consen 89 EQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVER 127 (132)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344556778999999999988755 66666666643
No 98
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=21.47 E-value=47 Score=35.19 Aligned_cols=69 Identities=13% Similarity=-0.025 Sum_probs=49.1
Q ss_pred CCccHHHHHhcccCCCCChhhHHhccCCeEEecC-CCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeeccc
Q 006876 517 VGLDEMTGVSIRRLPTKDEDLEQRLTSSILMTGG-CCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGAS 592 (627)
Q Consensus 517 ~gL~e~I~~sI~~~~~c~~d~r~~L~~NIvLtGG-~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~Ggs 592 (627)
.+|-.+|.+.|-.+ +|-.. +..-.++|+++|| .+..|.+.+++..-+.- +..+++.+.+..|.+-+||.
T Consensus 208 aSLl~mV~~nIg~l-A~~~a-~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAa 277 (279)
T TIGR00555 208 ASLLGLIGNNIGQI-AYLCA-LRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGAL 277 (279)
T ss_pred HHHHHHHHHHHHHH-HHHHH-HHcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhc
Confidence 36777788777654 23222 3344799999999 77889999999876652 23677878788888888875
No 99
>PRK09557 fructokinase; Reviewed
Probab=21.16 E-value=83 Score=32.95 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=35.7
Q ss_pred CCeEEecCCCCCcChHHHHHHHHHhhcC-CCCCeeEeeCCCCccceeecccccc
Q 006876 543 SSILMTGGCCLFPGMSERLEAGIRMIRP-CGAPIKVVRALDPVLDAWRGASVYA 595 (627)
Q Consensus 543 ~NIvLtGG~s~ipGf~eRL~~EL~~l~p-~~~~v~V~~~~~~~~saW~GgsilA 595 (627)
..|||.||.+..+.|-+.|.+.++.... ....+.|..+.-...++-+||+.+.
T Consensus 246 ~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 246 DVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 5688888888888888888888887543 2235566665544555566776543
No 100
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=21.04 E-value=48 Score=35.35 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=30.2
Q ss_pred cCCeEEecCCCCCcChHHHHHHHHHhhcCCCCCeeEeeCCCCccceeecccccc
Q 006876 542 TSSILMTGGCCLFPGMSERLEAGIRMIRPCGAPIKVVRALDPVLDAWRGASVYA 595 (627)
Q Consensus 542 ~~NIvLtGG~s~ipGf~eRL~~EL~~l~p~~~~v~V~~~~~~~~saW~GgsilA 595 (627)
+.+|+|+||++.+ |+.-|+...|. +.|+..++|+++.-.|--.++
T Consensus 274 ~~~Iil~GGGa~l------l~~~l~~~f~~---~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 274 IQNIVLVGGGAFL------FKKAVKAAFPK---HRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred ccEEEEeCCcHHH------HHHHHHHHCCC---CeeEecCCcHHHHHHHHHHhh
Confidence 6789999999983 33445555553 355566788888777755443
No 101
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.41 E-value=64 Score=27.56 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHhhhhhcCCCCCCC
Q 006876 444 MDENEAELARISARLQEVDPTFVPK 468 (627)
Q Consensus 444 ~~~~~~~l~~~~~~l~~~dp~f~~~ 468 (627)
+|.|+..|.++|++|..=||.|.-.
T Consensus 4 Se~E~r~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 4 SEHEQRRLEEIERQLRADDPRFAAR 28 (82)
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3578889999999999999999764
Done!