BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006877
(627 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 150 bits (380), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/77 (85%), Positives = 71/77 (92%)
Query: 243 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302
SP P+ FRCPISLELMKDPVIVSTGQTYERS IQKWLDAGHKTCPK+Q+TLLH LTPN
Sbjct: 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61
Query: 303 YVLKSLIALWCENNGVE 319
YVLKSLIALWCE+NG+E
Sbjct: 62 YVLKSLIALWCESNGIE 78
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 126/274 (45%), Gaps = 48/274 (17%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALL 409
+L + +++EQ +A + + + + +AGA+P LV+LLSS + + + A+ AL
Sbjct: 20 QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 410 NLSINDSNK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVXXXXXXXX 468
N++ + + +++AGA+P +V +L + + + + A L++LS I
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNI------------- 123
Query: 469 XXXXXXXCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEAL 528
G + A+ + AG +P L++ L ++ EAL
Sbjct: 124 -----------ASGGNEQIQAVID-------------AGALPALVQLLSSPNEQILQEAL 159
Query: 529 AILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA---ICTGDAEQLK 584
L+ +AS E A+ A +P L++++ S N + LWA I +G EQ +
Sbjct: 160 WALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQKQ 216
Query: 585 IARELDAEEALKELSESGTDRAKRKAGSILELLQ 618
+E A E L++L ++ +++A LE LQ
Sbjct: 217 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D A+ AL+ L++ N + + A L +A + + +AGA+P LV+LLSS +
Sbjct: 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110
Query: 399 RTQEHAVTALLNLSINDSNK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI 455
+ + A+ AL N++ + + +++AGA+P +V +L + + + + A L++LS I
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNI 165
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D A+ AL+ L++ N + + A L +A + + +AGA+P LV+LLSS +
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 194
Query: 399 RTQEHAVTALLNL-SINDSNKGTIVNAGAI 427
+ + A+ AL N+ S + K + AGA+
Sbjct: 195 QILQEALWALSNIASGGNEQKQAVKEAGAL 224
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 240 KHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 299
K + IPD IS ELM++P I +G TY+R I++ L P T+ L L
Sbjct: 97 KRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156
Query: 300 TPNYVLKSLIALWCENNG 317
PN +K +I + + NG
Sbjct: 157 IPNLAMKEVIDAFIQENG 174
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVL 305
IPD IS ELM++P I +G TY+R I++ L P T+ L L PN +
Sbjct: 2 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 306 KSLIALWCENNG 317
K +I + NG
Sbjct: 62 KEVIDAFISENG 73
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVL 305
IPD IS ELM++P I +G TY+R I++ L P T+ L L PN +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264
Query: 306 KSLI-ALWCENNGVE 319
K +I A EN VE
Sbjct: 265 KEVIDAFISENGWVE 279
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 344 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEH 403
++ L+ L + + E Q+ AA +L +A A I +AG + +LV+LL+STD Q+
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 404 AVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLS 453
A AL N++ D IV+AG + +V +L + E ++ AA L +++
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 114
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D ++ L+ L + + E Q+ AA L +A + I +AG + +LV+LL+STD
Sbjct: 41 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS 100
Query: 399 RTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLS 453
Q+ A AL N++ D IV+AG + +V +L + E ++ AA L +++
Sbjct: 101 EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 237 GLMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296
G M + IPD IS ELM +P I +G TY+R I++ L P T+ L
Sbjct: 1 GAMGSKKREIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 60
Query: 297 TALTPNYVLKSLIALWCENN 316
L PN +K +I + + N
Sbjct: 61 DQLIPNLAMKEVIDAFIQEN 80
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLK 306
PD+FR P+ LM DPV + +G +RS I + L T P +QTL + L P LK
Sbjct: 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPVPELK 85
Query: 307 SLIALWC 313
I W
Sbjct: 86 EQIQAWM 92
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWL-DAGHKTCPKTQQTLLHTALTP- 301
P + + CPI L +++ V G + ++CI K + DAGHK CP + LL L P
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPD 71
Query: 302 NYVLKSLIALW--CENNGV 318
N+ + +++L C N G
Sbjct: 72 NFAKREILSLMVKCPNEGC 90
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSSTDPRT-QEHAVTA 407
+L + +++EQ +A + R + R + + +AG +P LVE + P Q A A
Sbjct: 9 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWA 68
Query: 408 LLNLSINDSNKG-TIVNAGAIPDIVDVLKNGSMEARENAAATL 449
L N++ S + +V+A A+P + +L GS+E +E A L
Sbjct: 69 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL 111
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVD-EALAILAILASHQEGKT-AIGQAEPIPVLMEVIRTGS 561
++AG+VP L+ F+++ M+ EA L +AS +T + A+ +P+ ++++ TGS
Sbjct: 41 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 100
Query: 562 PRNRENAAAVLWAI 575
+E A +WA+
Sbjct: 101 VEVKEQA---IWAL 111
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSSTDPRT-QEHAVTA 407
+L + +++EQ +A + R + R + + +AG +P LVE + P Q A A
Sbjct: 7 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWA 66
Query: 408 LLNLSINDSNKG-TIVNAGAIPDIVDVLKNGSMEARENAAATL 449
L N++ S + +V+A A+P + +L GS+E +E A L
Sbjct: 67 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL 109
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVD-EALAILAILASHQEGKT-AIGQAEPIPVLMEVIRTGS 561
++AG+VP L+ F+++ M+ EA L +AS +T + A+ +P+ ++++ TGS
Sbjct: 39 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 98
Query: 562 PRNRENAAAVLWAI 575
+E A +WA+
Sbjct: 99 VEVKEQA---IWAL 109
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSSTDPRT-QEHAVTA 407
+L + +++EQ +A + R + R + + +AG +P LVE + P Q A A
Sbjct: 7 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWA 66
Query: 408 LLNLSINDSNKG-TIVNAGAIPDIVDVLKNGSMEARENAAATL 449
L N++ S + +V+A A+P + +L GS+E +E A L
Sbjct: 67 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL 109
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVD-EALAILAILASHQEGKT-AIGQAEPIPVLMEVIRTGS 561
++AG+VP L+ F+++ M+ EA L +AS +T + A+ +P+ ++++ TGS
Sbjct: 39 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 98
Query: 562 PRNRENAAAVLWAI 575
+E A +WA+
Sbjct: 99 VEVKEQA---IWAL 109
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSSTDPRT-QEHAVTA 407
+L + +++EQ +A + R + R + + +AG +P LVE + P Q A A
Sbjct: 9 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWA 68
Query: 408 LLNLSINDSNKG-TIVNAGAIPDIVDVLKNGSMEARENAAATL 449
L N++ S + +V+A A+P + +L GS+E +E A L
Sbjct: 69 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL 111
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVD-EALAILAILASHQEGKT-AIGQAEPIPVLMEVIRTGS 561
++AG+VP L+ F+++ M+ EA L +AS +T + A+ +P+ ++++ TGS
Sbjct: 41 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 100
Query: 562 PRNRENAAAVLWAI 575
+E A +WA+
Sbjct: 101 VEVKEQA---IWAL 111
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSSTDPRT-QEHAVTA 407
+L + +++EQ +A + R + R + + +AG +P LVE + P Q A A
Sbjct: 95 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWA 154
Query: 408 LLNLSINDSNKG-TIVNAGAIPDIVDVLKNGSMEARENAAATL 449
L N++ S + +V+A A+P + +L GS+E +E A L
Sbjct: 155 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL 197
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVD-EALAILAILASHQEGKT-AIGQAEPIPVLMEVIRTGS 561
++AG+VP L+ F+++ M+ EA L +AS +T + A+ +P+ ++++ TGS
Sbjct: 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 186
Query: 562 PRNRENAAAVLWAI 575
+E A +WA+
Sbjct: 187 VEVKEQA---IWAL 197
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWL-DAGHKTCPKTQQTLLHTALTP- 301
P + + CPI L +++ V G + ++CI K + DAGHK CP + LL L P
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPD 71
Query: 302 NYVLKSLIALW--CENNG 317
N+ + +++L C N G
Sbjct: 72 NFAKREILSLMVKCPNEG 89
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSSTDPRT-QEHAVTA 407
+L + +++EQ +A + R + R + + +AG +P LVE + P Q A A
Sbjct: 8 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWA 67
Query: 408 LLNLSINDSNKG-TIVNAGAIPDIVDVLKNGSMEARENAAATL 449
L N++ S + +V+A A+P + +L GS+E +E A L
Sbjct: 68 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL 110
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVD-EALAILAILASHQEGKT-AIGQAEPIPVLMEVIRTGS 561
++AG+VP L+ F+++ M+ EA L +AS +T + A+ +P+ ++++ TGS
Sbjct: 40 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 99
Query: 562 PRNRENAAAVLWAI 575
+E A +WA+
Sbjct: 100 VEVKEQA---IWAL 110
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSSTDPRT-QEHAVTA 407
+L + +++EQ +A + R + R + + +AG +P LVE + P Q A A
Sbjct: 8 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWA 67
Query: 408 LLNLSINDSNKG-TIVNAGAIPDIVDVLKNGSMEARENAAATL 449
L N++ S + +V+A A+P + +L GS+E +E A L
Sbjct: 68 LTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWAL 110
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVD-EALAILAILASHQEGKT-AIGQAEPIPVLMEVIRTGS 561
++AG+VP L+ F+++ M+ EA L +AS +T + A+ +P+ ++++ TGS
Sbjct: 40 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 99
Query: 562 PRNRENAAAVLWAI 575
+E A +WA+
Sbjct: 100 VEVKEQA---IWAL 110
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D A+ AL+ L++ N + + A L +A + + +AGA+P LV+LLSS +
Sbjct: 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110
Query: 399 RTQEHAVTALLNLSINDSNK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI 455
+ + A+ AL N++ + + +++AGA+P +V +L + + + + A L++LS I
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNI 165
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 357 EEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 416
+E ++A +L +A + + +AGA+P LV+LLSS + + + A+ AL N++ +
Sbjct: 27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86
Query: 417 NK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI 455
+ +++AGA+P +V +L + + + + A L++LS I
Sbjct: 87 EQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNI 123
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D A+ AL+ L++ N + + A L +A + + +AGA+P LV+LLSS +
Sbjct: 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Query: 399 RTQEHAVTALLNL-SINDSNKGTIVNAGAIPDI 430
+ + A+ AL N+ S + K + AGA P +
Sbjct: 153 QILQEALWALSNIASGGNEQKQAVKEAGAEPAL 185
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSP 562
+ AG +P L++ L ++ EAL L+ +AS E A+ A +P L++++ S
Sbjct: 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SS 107
Query: 563 RNRENAAAVLWA---ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKA 610
N + LWA I +G EQ++ + A AL +L S ++ ++A
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D A+ AL+ L++ N + + A L +A + + +AGA+P LV+LLSS +
Sbjct: 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110
Query: 399 RTQEHAVTALLNLSINDSNK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI 455
+ + A+ AL N++ + + +++AGA+P +V +L + + + + A L++LS I
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNI 165
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 350 KLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALL 409
+L + +++EQ +A + + + + +AGA+P LV+LLSS + + + A+ AL
Sbjct: 20 QLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 79
Query: 410 NLSINDSNK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI 455
N++ + + +++AGA+P +V +L + + + + A L++LS I
Sbjct: 80 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNI 123
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D A+ AL+ L++ N + + A L +A + + +AGA+P LV+LLSS +
Sbjct: 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Query: 399 RTQEHAVTALLNL-SINDSNKGTIVNAGAI 427
+ + A+ AL N+ S + K + AGA+
Sbjct: 153 QILQEALWALSNIASGGNEQKQAVKEAGAL 182
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 486 AATAIFNLSIYQGNKA--RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKT 542
+AT F+ + GN+ + AG +P L++ L ++ EAL L+ +AS E
Sbjct: 31 SATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 543 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA---ICTGDAEQLKIARELDAEEALKELS 599
A+ A +P L++++ S N + LWA I +G EQ++ + A AL +L
Sbjct: 91 AVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 600 ESGTDRAKRKA 610
S ++ ++A
Sbjct: 148 SSPNEQILQEA 158
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D A+ AL+ L++ N + + A L +A + + +AGA+P LV+LLSS +
Sbjct: 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 110
Query: 399 RTQEHAVTALLNLSINDSNK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI 455
+ + A+ AL N++ + + +++AGA+P +V +L + + + + A L++LS I
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA---LWALSNI 165
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 379 CIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-GTIVNAGAIPDIVDVLKNG 437
+ +AGA+P LV+LLSS + + + A+ AL N++ + + +++AGA+P +V +L +
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108
Query: 438 SMEARENAAATLFSLSVI 455
+ + + A L++LS I
Sbjct: 109 NEQILQEA---LWALSNI 123
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP 398
D A+ AL+ L++ N + + A L +A + + +AGA+P LV+LLSS +
Sbjct: 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Query: 399 RTQEHAVTALLNL-SINDSNKGTIVNAGAI 427
+ + A+ AL N+ S + K + AGA+
Sbjct: 153 QILQEALWALSNIASGGNEQKQAVKEAGAL 182
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 504 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSP 562
+ AG +P L++ L ++ EAL L+ +AS E A+ A +P L++++ S
Sbjct: 51 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SS 107
Query: 563 RNRENAAAVLWA---ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKA 610
N + LWA I +G EQ++ + A AL +L S ++ ++A
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 355 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSI 413
N + QRA G LR L + DN++ +AE +P L+++L T D T++ L NLS
Sbjct: 65 NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124
Query: 414 NDSNKGTIV 422
ND K ++
Sbjct: 125 NDKLKNLMI 133
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWL-DAGHKTCPKTQQTLLHTALTPN 302
P + + CPI L +++ V G + ++CI K + DAGHK CP + LL L P+
Sbjct: 20 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPD 78
Query: 303 YVLKSLI 309
K I
Sbjct: 79 NFAKREI 85
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLK 306
PD+FR P+ LM DPV + +G +RS I + L T P +Q L + L P LK
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPELK 70
Query: 307 SLIALW 312
I W
Sbjct: 71 EQIQAW 76
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 250 FRCPISLELMKDPVIVSTGQTYERSCIQKWL-DAGHKTCPKTQQTLLHTALTPNYVLK 306
+ CPI L +++ V G + ++CI K + DAGHK CP + LL L P+ K
Sbjct: 7 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHK-CPVDNEILLENQLFPDNFAK 63
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 355 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN 414
N Q +A L +A N+ + +AGA+P+ +ELLSS QE AV AL N++
Sbjct: 75 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA-G 133
Query: 415 DSN--KGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSL 452
DS + +++ +P ++ + K + NA L +L
Sbjct: 134 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 174
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 355 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN 414
N Q +A L +A N+ + +AGA+P+ +ELLSS QE AV AL N++
Sbjct: 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIA-G 136
Query: 415 DSN--KGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSL 452
DS + +++ +P ++ + K + NA L +L
Sbjct: 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 362 AAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI--NDSNKG 419
AA L+ L RN + + + IP+LV LL A AL N+S + NK
Sbjct: 68 AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127
Query: 420 TIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKV 460
I N +P +V +L+ M+ E TL++LS D K+
Sbjct: 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 252 CPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCP 288
C + LE +K+PVI+ G + ++CI +W + + P
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFP 54
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCI-----QKWLDAGHKTCPKTQQTLLHTALT 300
+ ++ CPI LEL+ P+ + G ++ ++C+ + LD G +CP + + +
Sbjct: 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75
Query: 301 PN 302
PN
Sbjct: 76 PN 77
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKT-----CPKTQQTLLHTAL 299
+I ++ CPI LEL+K+PV ++ R+CI ++ T CP + L
Sbjct: 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74
Query: 300 TPNYVLKSLI 309
PN + +++
Sbjct: 75 KPNLHVANIV 84
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R +G L L+ + + I ++G IP LV +L S
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLF 252
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
HA+T L NL ++ + K + AG + +V +L
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 285
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 361 AAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 420
A G L +LA R+ NR+ I IPL V+LL S Q A L L+ +
Sbjct: 571 ACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 629
Query: 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLS 453
I GA + ++L + + AAA LF +S
Sbjct: 630 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 116
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 438 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 497 EGATAPLTELLHSRNEGVATYAAAVLFRMS 526
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 265 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFK 324
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ AV A+ N + + G + IV ++ G +E N
Sbjct: 325 TQKEAVWAVTNYT----------SGGTVEQIVYLVHCGIIEPLMN 359
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 50 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 108
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 109 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 141
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 430 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 488
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 489 EGATAPLTELLHSRNEGVATYAAAVLFRMS 518
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + + I ++G IP LV++L S
Sbjct: 59 VSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLF 117
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 118 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 150
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 439 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 497
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 498 EGATAPLTELLHSRNEGVATYAAAVLFRMS 527
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 46 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 104
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 105 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 137
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 426 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 484
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 485 EGATAPLTELLHSRNEGVATYAAAVLFRMS 514
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 64 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 122
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 123 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 155
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 444 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 502
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 503 EGATAPLTELLHSRNEGVATYAAAVLFRMS 532
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 65 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 123
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 124 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 156
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 445 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 503
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 504 EGATAPLTELLHSRNEGVATYAAAVLFRMS 533
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 62 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 120
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 121 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 153
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 442 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 500
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 501 EGATAPLTELLHSRNEGVATYAAAVLFRMS 530
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 48 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 106
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 107 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 139
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 428 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 486
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 487 EGATAPLTELLHSRNEGVATYAAAVLFRMS 516
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 46 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 104
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 105 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 137
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 426 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 484
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 485 EGATAPLTELLHSRNEGVATYAAAVLFRMS 514
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 63 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 121
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 122 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 154
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 443 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 501
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 502 EGATAPLTELLHSRNEGVATYAAAVLFRMS 531
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 63 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 121
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 122 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 154
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 443 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 501
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 502 EGATAPLTELLHSRNEGVATYAAAVLFRMS 531
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 59 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 117
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 118 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 150
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 439 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 497
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 498 EGATAPLTELLHSRNEGVATYAAAVLFRMS 527
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S+ Q A L L+ + I
Sbjct: 442 GALHILA-RDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDA 500
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA ++++L + + AAA LF +S
Sbjct: 501 EGASAPLMELLHSRNEGTATYAAAVLFRIS 530
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 152
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 441 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 499
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLFSLS 453
GA + ++L + + AAA LF +S
Sbjct: 500 EGATAPLTELLHSRNEGVATYAAAVLFRMS 529
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 57 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 115
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 116 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 148
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ + N N VE R AG L L+ + + I ++G IP LV++L S
Sbjct: 57 VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 115
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVL 434
+A+T L NL ++ + K + AG + +V +L
Sbjct: 116 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 148
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 248 DDFRCPISLELMKDPVIVSTGQ-TYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLK 306
D+F PI LM DPV++ + + T +RS I + L +T P + L + PN LK
Sbjct: 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-LSDQTDPFNRSPLTMDQIRPNTELK 79
Query: 307 SLIALW 312
I W
Sbjct: 80 EKIQRW 85
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 246 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYV 304
+PD+F P+ +MKDPVI+ ++ +RS I+ L T P + L +TPN
Sbjct: 902 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEE 960
Query: 305 LKSLIALW 312
L+ I +
Sbjct: 961 LRQKILCF 968
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 246 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYV 304
+PD+F P+ +MKDPVI+ ++ +RS I+ L T P + L +TPN
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEE 946
Query: 305 LKSLIALW 312
L+ I +
Sbjct: 947 LRQKILCF 954
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 252 CPISLELMKDPVIVSTGQTYERSCIQKWLD--AGHKTCP 288
CPI LEL+K+PV + + C+ K L+ G CP
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP 62
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 202 GDPGDCFEEISSLLRKL----KDFVLI---ENPEVDITEGEKGLMK--------HRSPVI 246
G PG F+E +L+ +L KDF I +N E++ T+ EK M+ H + V+
Sbjct: 4 GSPG--FQEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVL 61
Query: 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWL 280
++ +C I E + V ++ ++ CI +W+
Sbjct: 62 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM 95
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 264 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 323
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 324 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 358
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 270 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 329
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 330 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 364
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 263 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 322
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 323 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 357
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 259 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 318
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 319 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 353
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 263 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 322
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 323 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 357
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 300 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 359
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 360 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 394
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 259 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 318
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 319 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 353
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 374 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 408
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 264 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 323
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 324 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 358
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 264 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 323
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 324 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 358
>pdb|1HUP|A Chain A, Human Mannose Binding Protein Carbohydrate Recognition
Domain Trimerizes Through A Triple Alpha-Helical
Coiled-Coil
Length = 141
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 381 AEAGAIPLLVE---LLSSTDPRTQEHAVTALLN-LSINDSNKGTIVNAGAIPDIVDVLKN 436
AE GAI L++ L TD +T+ V N L+ + N+G NAG+ D V +LKN
Sbjct: 62 AENGAIQNLIKEEAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKN 121
Query: 437 GSM 439
G
Sbjct: 122 GQW 124
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 374 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 408
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 290 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 349
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 350 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 384
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 298 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 357
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 358 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 392
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 373
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 374 TQKEAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 408
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCI 276
+ ++ CPI LEL+ +P+ + G + R+CI
Sbjct: 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACI 39
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 250 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTL-LHTALTPNYVLKSL 308
F C EL+ PV + C+Q+ A +CP + L + + PN +L++L
Sbjct: 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTL 138
Query: 309 IALW 312
+ L+
Sbjct: 139 LDLF 142
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
D A+ L N Q+ A + + D + G +P LV +LS D +
Sbjct: 333 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392
Query: 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEAREN 444
TQ+ A A+ N + + G + IV ++ G +E N
Sbjct: 393 TQKAAAWAITNYT----------SGGTVEQIVYLVHCGIIEPLMN 427
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 344 IDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402
+ A++ N N VE R AG L L+ + + I ++G IP LV+ L S
Sbjct: 3 VSAIVRTXQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKXLGSPVDSVLF 61
Query: 403 HAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSME 440
+A+T L NL ++ + K + AG + V +L +++
Sbjct: 62 YAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVK 100
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 364 GELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423
G L +LA R+ NR+ I IPL V+LL S Q A L L+ + I
Sbjct: 383 GALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 441
Query: 424 AGAIPDIVDVLKNGSMEARENAAATLF 450
GA + ++L + + AAA LF
Sbjct: 442 EGATAPLTELLHSRNEGVATYAAAVLF 468
>pdb|4H40|A Chain A, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf2867) From Bacteroides Fragilis Nctc 9343 At 2.57 A
Resolution
pdb|4H40|B Chain B, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf2867) From Bacteroides Fragilis Nctc 9343 At 2.57 A
Resolution
Length = 327
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 11/45 (24%)
Query: 370 AKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN 414
A RNADN + +A G +P TD R+ H+++ LLNL +N
Sbjct: 243 ATRNADNSL-VAHTGVLP--------TDARS--HSISVLLNLKVN 276
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 246 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYV 304
+PD+F P+ + KDPVI+ ++ +RS I+ L T P + L +TPN
Sbjct: 902 VPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHL-LSDSTDPFNRXPLKLEDVTPNEE 960
Query: 305 LKSLIALW 312
L+ I +
Sbjct: 961 LRQKILCF 968
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 341 RAAIDALLGKLANGNVEEQRA-AAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
R A+ AL +L + N EE A L L+ D + EAG P LVELL P
Sbjct: 205 RPALPAL-ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 263
Query: 400 TQEHAVTALLNL-SINDSNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSVIDE 457
A+ + N+ + +D+ I++ A+P ++ +L +N ++ A T+ +++ ++
Sbjct: 264 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 323
Query: 458 NKV 460
+++
Sbjct: 324 DQI 326
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 341 RAAIDALLGKLANGNVEEQRA-AAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPR 399
R A+ AL +L + N EE A L L+ D + EAG P LVELL P
Sbjct: 243 RPALPAL-ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301
Query: 400 TQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSVIDE 457
A+ + N+ +D+ I++ A+P ++ +L +N ++ A T+ +++ ++
Sbjct: 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361
Query: 458 NKV 460
+++
Sbjct: 362 DQI 364
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 211 ISSLLRKLKDFVLI---ENPEVDITEGEKGLMK--------HRSPVIPDDFRCPISLELM 259
+ L R KDF I +N E++ T+ EK M+ H + V+ ++ +C I E
Sbjct: 4 MEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF 63
Query: 260 KDPVIVSTGQTYERSCIQKWL 280
+ V ++ ++ CI +W+
Sbjct: 64 IEAVTLNCAHSFCSYCINEWM 84
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 211 ISSLLRKLKDFVLI---ENPEVDITEGEKGLMK--------HRSPVIPDDFRCPISLELM 259
+ L R KDF I +N E++ T+ EK M+ H + V+ ++ +C I E
Sbjct: 4 MEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYF 63
Query: 260 KDPVIVSTGQTYERSCIQKWL 280
+ V ++ ++ CI +W+
Sbjct: 64 IEAVTLNCAHSFCSYCINEWM 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,601,511
Number of Sequences: 62578
Number of extensions: 723452
Number of successful extensions: 2070
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1844
Number of HSP's gapped (non-prelim): 202
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)