Query 006877
Match_columns 627
No_of_seqs 474 out of 2757
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 15:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1.1E-27 2.3E-32 284.1 33.2 280 340-619 11-312 (2102)
2 PLN03200 cellulose synthase-in 100.0 7.3E-27 1.6E-31 277.0 32.1 283 338-621 442-766 (2102)
3 KOG0166 Karyopherin (importin) 100.0 2.8E-27 6E-32 247.2 25.2 278 342-619 109-393 (514)
4 KOG4224 Armadillo repeat prote 99.9 7.6E-27 1.7E-31 227.9 20.0 280 338-618 122-404 (550)
5 KOG4224 Armadillo repeat prote 99.9 2.2E-26 4.7E-31 224.8 20.8 281 338-620 163-447 (550)
6 COG5064 SRP1 Karyopherin (impo 99.9 8.4E-26 1.8E-30 218.9 15.6 281 339-619 111-398 (526)
7 KOG0166 Karyopherin (importin) 99.9 2.8E-24 6E-29 224.9 25.1 285 338-622 148-439 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 4.6E-22 9.9E-27 193.1 19.5 280 338-619 153-443 (526)
9 PF05804 KAP: Kinesin-associat 99.8 1.3E-17 2.8E-22 184.5 30.0 282 338-622 286-652 (708)
10 PF05804 KAP: Kinesin-associat 99.8 2.5E-17 5.5E-22 182.2 28.0 254 357-618 264-519 (708)
11 PF04564 U-box: U-box domain; 99.8 2.4E-19 5.2E-24 142.1 4.9 72 246-317 1-72 (73)
12 KOG1048 Neural adherens juncti 99.7 1.5E-15 3.2E-20 164.3 27.0 284 340-624 231-689 (717)
13 KOG4199 Uncharacterized conser 99.7 1E-14 2.2E-19 142.3 25.9 276 342-618 145-443 (461)
14 KOG2122 Beta-catenin-binding p 99.6 2.6E-14 5.7E-19 160.2 18.3 260 361-621 317-603 (2195)
15 PF04826 Arm_2: Armadillo-like 99.6 2.3E-13 5E-18 134.3 21.3 226 381-610 9-253 (254)
16 smart00504 Ubox Modified RING 99.6 2.5E-15 5.5E-20 116.2 5.6 63 249-312 1-63 (63)
17 PF04826 Arm_2: Armadillo-like 99.6 6.6E-13 1.4E-17 131.1 23.6 194 339-537 9-206 (254)
18 KOG4199 Uncharacterized conser 99.6 1.4E-12 3E-17 127.6 24.2 264 351-618 116-402 (461)
19 KOG2122 Beta-catenin-binding p 99.5 5.4E-13 1.2E-17 149.9 17.2 226 357-582 366-606 (2195)
20 PF10508 Proteasom_PSMB: Prote 99.5 1.5E-11 3.3E-16 134.9 28.4 276 341-617 76-364 (503)
21 KOG4500 Rho/Rac GTPase guanine 99.4 8.1E-11 1.8E-15 118.7 20.3 282 340-622 85-434 (604)
22 PF10508 Proteasom_PSMB: Prote 99.3 2.3E-10 5E-15 125.6 25.4 275 345-623 41-323 (503)
23 KOG1222 Kinesin associated pro 99.3 2E-10 4.4E-15 117.2 22.3 278 340-621 302-665 (791)
24 KOG4642 Chaperone-dependent E3 99.3 3E-11 6.4E-16 113.4 11.0 250 30-319 22-281 (284)
25 KOG1048 Neural adherens juncti 99.3 1.3E-10 2.9E-15 126.3 17.2 234 386-619 235-595 (717)
26 cd00020 ARM Armadillo/beta-cat 99.2 1.1E-10 2.5E-15 102.3 13.3 117 379-495 2-120 (120)
27 cd00020 ARM Armadillo/beta-cat 99.2 2.4E-10 5.1E-15 100.3 15.0 117 502-618 2-119 (120)
28 PRK09687 putative lyase; Provi 99.2 1.7E-09 3.6E-14 109.4 19.9 222 343-615 55-278 (280)
29 PF15227 zf-C3HC4_4: zinc fing 99.2 1.6E-11 3.6E-16 85.3 2.9 39 252-290 1-42 (42)
30 PRK09687 putative lyase; Provi 99.1 2.5E-09 5.4E-14 108.1 19.0 226 343-619 24-250 (280)
31 cd00256 VATPase_H VATPase_H, r 99.1 1.3E-08 2.8E-13 107.1 24.3 274 344-617 103-423 (429)
32 KOG1222 Kinesin associated pro 99.1 9.9E-09 2.1E-13 105.1 21.2 251 358-617 279-532 (791)
33 PLN03208 E3 ubiquitin-protein 99.1 7.5E-11 1.6E-15 108.6 4.1 60 245-304 14-88 (193)
34 PF03224 V-ATPase_H_N: V-ATPas 99.1 4.4E-09 9.5E-14 108.8 17.5 250 365-614 33-309 (312)
35 KOG0168 Putative ubiquitin fus 99.0 1.9E-08 4.1E-13 109.4 20.9 258 341-602 166-438 (1051)
36 TIGR00599 rad18 DNA repair pro 99.0 2.4E-10 5.2E-15 118.3 5.6 70 244-314 21-90 (397)
37 KOG4500 Rho/Rac GTPase guanine 99.0 4.4E-08 9.4E-13 99.4 20.2 277 343-620 224-520 (604)
38 PF03224 V-ATPase_H_N: V-ATPas 99.0 3E-08 6.5E-13 102.5 18.3 220 346-567 62-304 (312)
39 KOG0946 ER-Golgi vesicle-tethe 98.9 1.1E-06 2.4E-11 95.4 27.2 259 340-602 20-327 (970)
40 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.2E-09 2.6E-14 75.2 3.1 38 252-290 1-39 (39)
41 PRK13800 putative oxidoreducta 98.8 3.7E-07 8E-12 107.5 24.1 238 340-615 619-895 (897)
42 KOG2160 Armadillo/beta-catenin 98.8 4.7E-07 1E-11 91.2 21.1 229 353-582 94-334 (342)
43 KOG0823 Predicted E3 ubiquitin 98.8 3.3E-09 7.1E-14 99.4 2.9 59 247-305 45-105 (230)
44 KOG2759 Vacuolar H+-ATPase V1 98.8 1.4E-06 3E-11 88.9 21.7 274 344-618 116-437 (442)
45 KOG0287 Postreplication repair 98.8 3E-09 6.4E-14 103.7 2.3 68 246-314 20-87 (442)
46 PRK13800 putative oxidoreducta 98.8 1.8E-06 3.8E-11 101.9 25.7 203 341-573 651-895 (897)
47 cd00256 VATPase_H VATPase_H, r 98.7 1.4E-06 2.9E-11 92.1 21.4 231 345-577 146-425 (429)
48 KOG3678 SARM protein (with ste 98.7 5.8E-07 1.3E-11 92.0 17.4 269 339-620 177-453 (832)
49 PF13445 zf-RING_UBOX: RING-ty 98.7 8.1E-09 1.7E-13 71.7 2.6 36 252-288 1-43 (43)
50 KOG2160 Armadillo/beta-catenin 98.7 1.3E-06 2.9E-11 87.9 18.6 177 437-613 95-276 (342)
51 PF00097 zf-C3HC4: Zinc finger 98.7 1.6E-08 3.5E-13 70.5 3.5 39 252-290 1-41 (41)
52 PHA02929 N1R/p28-like protein; 98.7 1.9E-08 4.1E-13 97.2 4.9 48 247-295 172-227 (238)
53 PF01602 Adaptin_N: Adaptin N 98.6 2.3E-06 5E-11 95.5 20.8 253 343-619 80-333 (526)
54 PF14835 zf-RING_6: zf-RING of 98.6 9.4E-09 2E-13 76.1 1.0 59 248-309 6-65 (65)
55 KOG0317 Predicted E3 ubiquitin 98.6 2.1E-08 4.4E-13 96.9 3.5 54 245-299 235-288 (293)
56 PF13920 zf-C3HC4_3: Zinc fing 98.6 3.2E-08 6.8E-13 72.2 3.6 47 248-295 1-48 (50)
57 KOG2973 Uncharacterized conser 98.6 1.4E-05 3E-10 78.5 21.1 269 344-619 5-315 (353)
58 KOG0320 Predicted E3 ubiquitin 98.6 4.2E-08 9E-13 87.9 3.4 54 247-301 129-184 (187)
59 COG5432 RAD18 RING-finger-cont 98.5 3.4E-08 7.5E-13 94.4 2.8 68 246-314 22-89 (391)
60 PF11789 zf-Nse: Zinc-finger o 98.5 3.4E-08 7.4E-13 73.4 1.8 44 248-291 10-55 (57)
61 KOG4646 Uncharacterized conser 98.5 6.9E-07 1.5E-11 76.9 9.8 152 425-576 16-169 (173)
62 PF01602 Adaptin_N: Adaptin N 98.5 7.3E-06 1.6E-10 91.5 20.5 253 342-619 114-369 (526)
63 PF13639 zf-RING_2: Ring finge 98.5 5.4E-08 1.2E-12 68.9 2.1 40 251-291 2-44 (44)
64 KOG4646 Uncharacterized conser 98.5 1.5E-06 3.2E-11 74.9 10.1 153 463-615 13-166 (173)
65 cd00162 RING RING-finger (Real 98.4 2.4E-07 5.2E-12 65.7 3.9 43 251-293 1-44 (45)
66 KOG0168 Putative ubiquitin fus 98.4 9.1E-06 2E-10 89.1 17.1 217 341-559 210-437 (1051)
67 KOG0978 E3 ubiquitin ligase in 98.4 9.3E-07 2E-11 96.8 8.1 54 248-301 642-695 (698)
68 KOG2759 Vacuolar H+-ATPase V1 98.3 3.7E-05 8.1E-10 78.7 18.3 231 346-578 160-439 (442)
69 smart00184 RING Ring finger. E 98.3 5.5E-07 1.2E-11 61.5 3.6 39 252-290 1-39 (39)
70 KOG0946 ER-Golgi vesicle-tethe 98.3 0.00022 4.8E-09 78.1 24.5 276 342-617 61-397 (970)
71 KOG2171 Karyopherin (importin) 98.3 3.9E-05 8.4E-10 87.5 19.5 237 343-581 349-598 (1075)
72 KOG1293 Proteins containing ar 98.3 4E-05 8.7E-10 82.4 17.9 152 436-587 388-543 (678)
73 PHA02926 zinc finger-like prot 98.3 6.6E-07 1.4E-11 83.3 3.5 49 247-295 168-230 (242)
74 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00043 9.3E-09 72.8 25.0 273 343-619 26-364 (371)
75 PTZ00429 beta-adaptin; Provisi 98.2 0.00031 6.8E-09 79.9 25.5 256 343-618 69-325 (746)
76 KOG2023 Nuclear transport rece 98.2 3.8E-05 8.1E-10 82.4 16.5 266 342-620 128-464 (885)
77 KOG1293 Proteins containing ar 98.2 3E-05 6.6E-10 83.3 15.5 272 347-618 237-532 (678)
78 KOG2177 Predicted E3 ubiquitin 98.2 7.6E-07 1.7E-11 92.8 3.5 69 245-316 9-77 (386)
79 KOG0311 Predicted E3 ubiquitin 98.2 3E-07 6.4E-12 91.1 -0.1 70 245-314 39-110 (381)
80 KOG2171 Karyopherin (importin) 98.2 0.00027 6E-09 80.7 22.6 257 355-617 262-547 (1075)
81 PF05536 Neurochondrin: Neuroc 98.2 5.7E-05 1.2E-09 83.5 16.7 191 426-617 6-211 (543)
82 COG5574 PEX10 RING-finger-cont 98.1 1.3E-06 2.9E-11 83.5 3.2 52 247-298 213-265 (271)
83 PF14634 zf-RING_5: zinc-RING 98.1 2E-06 4.3E-11 60.8 2.9 41 251-292 1-44 (44)
84 TIGR00570 cdk7 CDK-activating 98.1 3.2E-06 7E-11 84.2 5.3 51 248-298 2-57 (309)
85 KOG2973 Uncharacterized conser 98.1 0.0001 2.2E-09 72.6 15.2 196 387-586 6-213 (353)
86 KOG2164 Predicted E3 ubiquitin 98.1 2.3E-06 4.9E-11 89.4 3.2 69 249-317 186-262 (513)
87 PF00514 Arm: Armadillo/beta-c 98.0 8E-06 1.7E-10 56.7 4.5 40 373-412 1-40 (41)
88 KOG2734 Uncharacterized conser 98.0 0.00089 1.9E-08 69.0 20.6 239 360-600 102-371 (536)
89 PF05536 Neurochondrin: Neuroc 98.0 0.00047 1E-08 76.3 20.0 235 341-576 4-260 (543)
90 PTZ00429 beta-adaptin; Provisi 98.0 0.0022 4.7E-08 73.2 25.5 248 301-580 80-329 (746)
91 TIGR02270 conserved hypothetic 98.0 0.00078 1.7E-08 71.7 20.6 186 386-618 88-295 (410)
92 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.00028 6E-09 69.7 15.4 228 391-618 156-427 (432)
93 KOG2660 Locus-specific chromos 98.0 4.3E-06 9.3E-11 82.7 3.0 65 245-310 11-80 (331)
94 PF12678 zf-rbx1: RING-H2 zinc 97.9 1E-05 2.2E-10 63.9 4.0 39 252-291 22-73 (73)
95 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0014 3.1E-08 68.9 20.6 250 365-617 6-267 (371)
96 COG5222 Uncharacterized conser 97.9 1.4E-05 3E-10 77.0 4.7 67 250-316 275-343 (427)
97 KOG0212 Uncharacterized conser 97.8 0.00046 9.9E-09 73.1 15.6 232 343-578 209-445 (675)
98 PF12348 CLASP_N: CLASP N term 97.8 0.00024 5.2E-09 70.0 12.2 182 435-620 17-207 (228)
99 KOG0297 TNF receptor-associate 97.8 1.8E-05 4E-10 83.7 3.8 70 242-312 14-85 (391)
100 KOG4413 26S proteasome regulat 97.7 0.0016 3.5E-08 64.7 16.3 277 340-617 126-437 (524)
101 KOG3678 SARM protein (with ste 97.7 0.00052 1.1E-08 71.0 12.8 181 377-559 173-359 (832)
102 COG1413 FOG: HEAT repeat [Ener 97.7 0.0056 1.2E-07 64.1 21.2 187 342-577 43-242 (335)
103 KOG2023 Nuclear transport rece 97.7 0.00082 1.8E-08 72.5 14.5 264 341-619 173-505 (885)
104 KOG1517 Guanine nucleotide bin 97.7 0.0025 5.5E-08 72.0 18.7 230 359-588 487-743 (1387)
105 PF12348 CLASP_N: CLASP N term 97.7 0.00048 1E-08 67.9 12.1 185 351-540 16-210 (228)
106 KOG4159 Predicted E3 ubiquitin 97.7 3.1E-05 6.7E-10 80.8 3.6 73 242-315 77-154 (398)
107 KOG0212 Uncharacterized conser 97.6 0.0029 6.4E-08 67.2 17.7 272 341-618 166-443 (675)
108 KOG2734 Uncharacterized conser 97.6 0.023 4.9E-07 59.0 23.5 239 340-579 123-402 (536)
109 KOG1002 Nucleotide excision re 97.6 5.4E-05 1.2E-09 78.6 4.6 84 208-297 501-588 (791)
110 PF10165 Ric8: Guanine nucleot 97.6 0.0057 1.2E-07 66.3 20.4 256 363-619 2-337 (446)
111 PF00514 Arm: Armadillo/beta-c 97.6 0.00011 2.3E-09 51.1 4.6 41 537-577 1-41 (41)
112 KOG4413 26S proteasome regulat 97.6 0.01 2.2E-07 59.2 19.1 236 354-590 94-345 (524)
113 COG5369 Uncharacterized conser 97.5 0.00096 2.1E-08 70.3 12.2 259 360-618 407-740 (743)
114 PF10165 Ric8: Guanine nucleot 97.5 0.02 4.4E-07 62.1 23.1 231 353-583 43-343 (446)
115 PF13646 HEAT_2: HEAT repeats; 97.5 0.00043 9.2E-09 56.8 7.7 86 386-491 1-88 (88)
116 TIGR02270 conserved hypothetic 97.5 0.0093 2E-07 63.6 19.4 153 384-577 54-207 (410)
117 KOG2042 Ubiquitin fusion degra 97.5 0.00014 3.1E-09 82.3 5.6 73 243-316 864-937 (943)
118 PF12861 zf-Apc11: Anaphase-pr 97.4 0.00015 3.3E-09 57.8 3.5 46 250-295 33-82 (85)
119 KOG0824 Predicted E3 ubiquitin 97.4 7E-05 1.5E-09 73.0 1.8 48 251-298 9-56 (324)
120 KOG1242 Protein containing ada 97.4 0.025 5.3E-07 61.3 20.8 266 342-617 134-442 (569)
121 smart00185 ARM Armadillo/beta- 97.3 0.00054 1.2E-08 47.2 5.3 40 374-413 2-41 (41)
122 KOG2879 Predicted E3 ubiquitin 97.3 0.00022 4.7E-09 68.8 3.9 50 246-295 236-287 (298)
123 PF13646 HEAT_2: HEAT repeats; 97.3 0.00082 1.8E-08 55.1 6.8 86 344-450 1-88 (88)
124 COG5369 Uncharacterized conser 97.3 0.0048 1E-07 65.2 13.6 196 404-599 409-617 (743)
125 KOG1241 Karyopherin (importin) 97.3 0.033 7.2E-07 61.5 20.3 270 342-620 129-436 (859)
126 KOG1789 Endocytosis protein RM 97.2 0.049 1.1E-06 62.0 21.7 136 358-494 1741-1882(2235)
127 KOG4628 Predicted E3 ubiquitin 97.2 0.00018 3.9E-09 73.1 2.5 47 250-296 230-279 (348)
128 COG1413 FOG: HEAT repeat [Ener 97.2 0.023 5.1E-07 59.4 18.3 192 384-617 43-240 (335)
129 PF05659 RPW8: Arabidopsis bro 97.2 0.0053 1.2E-07 55.5 11.4 106 7-120 15-121 (147)
130 COG5152 Uncharacterized conser 97.2 0.00013 2.9E-09 66.4 1.0 46 249-295 196-241 (259)
131 KOG0802 E3 ubiquitin ligase [P 97.2 0.00017 3.7E-09 80.1 1.9 47 248-295 290-341 (543)
132 COG5113 UFD2 Ubiquitin fusion 97.1 0.0011 2.3E-08 70.9 7.3 99 207-317 823-922 (929)
133 KOG1059 Vesicle coat complex A 97.1 0.039 8.4E-07 60.6 18.7 254 342-618 181-442 (877)
134 KOG3036 Protein involved in ce 97.1 0.31 6.7E-06 47.1 23.0 232 343-577 27-291 (293)
135 COG5231 VMA13 Vacuolar H+-ATPa 97.1 0.033 7.1E-07 55.5 16.4 224 352-576 159-427 (432)
136 PF11841 DUF3361: Domain of un 97.0 0.012 2.6E-07 53.4 12.3 122 460-581 5-135 (160)
137 PF04063 DUF383: Domain of unk 97.0 0.0045 9.6E-08 58.7 9.8 123 478-600 7-157 (192)
138 COG5540 RING-finger-containing 97.0 0.0004 8.6E-09 67.7 2.4 47 250-296 324-373 (374)
139 KOG1813 Predicted E3 ubiquitin 97.0 0.00028 6E-09 68.8 1.3 46 249-295 241-286 (313)
140 COG5243 HRD1 HRD ubiquitin lig 97.0 0.00052 1.1E-08 68.6 3.2 48 247-295 285-345 (491)
141 KOG1059 Vesicle coat complex A 96.9 0.37 7.9E-06 53.3 23.5 251 341-618 143-401 (877)
142 KOG1242 Protein containing ada 96.8 0.1 2.3E-06 56.6 19.1 224 343-579 217-446 (569)
143 KOG1241 Karyopherin (importin) 96.8 0.085 1.8E-06 58.4 18.4 258 342-602 364-692 (859)
144 KOG2259 Uncharacterized conser 96.8 0.038 8.2E-07 60.1 15.1 225 342-581 198-479 (823)
145 smart00185 ARM Armadillo/beta- 96.7 0.0032 6.9E-08 43.2 4.8 39 457-495 3-41 (41)
146 KOG1517 Guanine nucleotide bin 96.7 0.056 1.2E-06 61.7 16.6 228 386-618 474-731 (1387)
147 KOG0826 Predicted E3 ubiquitin 96.7 0.0014 3.1E-08 64.9 3.8 58 237-295 288-346 (357)
148 KOG0213 Splicing factor 3b, su 96.7 0.046 9.9E-07 60.1 15.2 150 467-619 800-954 (1172)
149 KOG2259 Uncharacterized conser 96.6 0.013 2.8E-07 63.6 10.6 213 389-617 203-473 (823)
150 KOG0804 Cytoplasmic Zn-finger 96.6 0.00096 2.1E-08 68.7 2.1 47 246-295 172-222 (493)
151 COG5181 HSH155 U2 snRNP splice 96.6 0.19 4.1E-06 54.4 18.7 236 341-580 603-873 (975)
152 PF11841 DUF3361: Domain of un 96.6 0.039 8.5E-07 50.1 11.9 117 501-617 5-129 (160)
153 KOG1061 Vesicle coat complex A 96.6 0.022 4.8E-07 63.1 12.3 244 342-603 49-293 (734)
154 KOG1062 Vesicle coat complex A 96.5 0.25 5.4E-06 55.2 19.7 214 343-577 180-414 (866)
155 PF13513 HEAT_EZ: HEAT-like re 96.5 0.006 1.3E-07 45.1 5.2 55 439-493 1-55 (55)
156 KOG1824 TATA-binding protein-i 96.5 0.13 2.7E-06 58.4 17.2 238 339-584 44-293 (1233)
157 KOG0213 Splicing factor 3b, su 96.5 0.3 6.4E-06 54.1 19.5 232 342-580 799-1068(1172)
158 KOG1824 TATA-binding protein-i 96.4 0.07 1.5E-06 60.3 15.0 265 346-618 9-285 (1233)
159 PF04078 Rcd1: Cell differenti 96.4 0.11 2.5E-06 50.9 14.9 140 479-618 8-167 (262)
160 COG5215 KAP95 Karyopherin (imp 96.4 0.3 6.5E-06 52.6 18.6 269 343-620 134-438 (858)
161 KOG1248 Uncharacterized conser 96.4 0.15 3.3E-06 59.2 17.6 217 394-619 664-898 (1176)
162 KOG0289 mRNA splicing factor [ 96.3 0.0076 1.6E-07 62.0 6.4 51 250-301 1-52 (506)
163 PF09759 Atx10homo_assoc: Spin 96.3 0.028 6E-07 47.2 8.5 67 523-589 2-71 (102)
164 KOG1062 Vesicle coat complex A 96.3 0.23 5.1E-06 55.4 17.7 226 388-622 111-382 (866)
165 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0062 1.3E-07 45.1 4.1 55 398-452 1-55 (55)
166 COG5240 SEC21 Vesicle coat com 96.2 0.4 8.6E-06 51.6 18.4 264 343-621 265-557 (898)
167 PF04063 DUF383: Domain of unk 96.0 0.031 6.6E-07 53.1 8.5 123 395-517 6-157 (192)
168 KOG1061 Vesicle coat complex A 96.0 0.092 2E-06 58.4 13.2 171 342-519 121-292 (734)
169 PF08569 Mo25: Mo25-like; Int 96.0 0.15 3.2E-06 52.9 14.1 196 342-539 76-286 (335)
170 KOG4367 Predicted Zn-finger pr 96.0 0.0029 6.2E-08 64.5 1.3 35 247-281 2-36 (699)
171 KOG3036 Protein involved in ce 96.0 0.27 5.9E-06 47.5 14.4 141 480-620 93-248 (293)
172 COG5096 Vesicle coat complex, 95.9 0.19 4E-06 57.0 15.5 67 467-535 128-194 (757)
173 KOG1734 Predicted RING-contain 95.9 0.0021 4.6E-08 61.7 0.1 56 247-302 222-288 (328)
174 COG5096 Vesicle coat complex, 95.9 0.81 1.8E-05 52.0 20.1 141 343-496 56-196 (757)
175 KOG1789 Endocytosis protein RM 95.9 0.14 3.1E-06 58.4 13.9 136 442-578 1742-1884(2235)
176 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.035 7.5E-07 47.9 7.2 72 340-411 41-113 (119)
177 PF09759 Atx10homo_assoc: Spin 95.8 0.035 7.5E-07 46.6 6.9 65 359-423 3-70 (102)
178 KOG3039 Uncharacterized conser 95.8 0.0067 1.4E-07 57.6 2.9 53 248-301 220-276 (303)
179 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.0079 1.7E-07 60.3 3.5 53 246-300 110-166 (260)
180 PF04078 Rcd1: Cell differenti 95.7 0.39 8.6E-06 47.2 14.7 192 355-546 8-228 (262)
181 PF05004 IFRD: Interferon-rela 95.5 0.75 1.6E-05 47.4 17.0 189 427-619 45-257 (309)
182 PF13764 E3_UbLigase_R4: E3 ub 95.5 1.2 2.6E-05 51.4 20.0 240 379-620 112-407 (802)
183 KOG0828 Predicted E3 ubiquitin 95.5 0.0082 1.8E-07 62.5 2.6 51 246-296 568-635 (636)
184 KOG4172 Predicted E3 ubiquitin 95.4 0.004 8.6E-08 44.4 -0.0 45 250-294 8-53 (62)
185 PF05004 IFRD: Interferon-rela 95.4 0.72 1.6E-05 47.5 16.5 184 392-577 51-257 (309)
186 KOG1077 Vesicle coat complex A 95.4 1.4 3E-05 48.8 18.6 264 342-620 111-399 (938)
187 KOG1078 Vesicle coat complex C 95.3 1.1 2.4E-05 50.1 17.9 259 342-621 245-534 (865)
188 KOG1039 Predicted E3 ubiquitin 95.3 0.011 2.5E-07 60.6 2.7 50 246-295 158-221 (344)
189 PF08045 CDC14: Cell division 95.2 0.32 6.9E-06 48.1 12.5 95 523-617 107-205 (257)
190 KOG0567 HEAT repeat-containing 95.1 1.1 2.4E-05 44.0 15.4 196 382-618 65-279 (289)
191 KOG4151 Myosin assembly protei 95.1 0.27 5.9E-06 55.1 12.6 198 413-615 492-695 (748)
192 COG5215 KAP95 Karyopherin (imp 94.9 4.3 9.3E-05 44.1 20.1 225 389-619 99-357 (858)
193 KOG2999 Regulator of Rac1, req 94.9 0.45 9.8E-06 51.0 12.9 155 426-580 84-245 (713)
194 PF11793 FANCL_C: FANCL C-term 94.8 0.0093 2E-07 46.6 0.5 47 249-295 2-66 (70)
195 COG5194 APC11 Component of SCF 94.8 0.028 6.2E-07 43.6 3.0 44 251-295 33-81 (88)
196 PF12755 Vac14_Fab1_bd: Vacuol 94.7 0.2 4.3E-06 41.9 8.1 70 548-618 27-96 (97)
197 PF14668 RICTOR_V: Rapamycin-i 94.7 0.15 3.2E-06 40.1 6.8 66 483-548 4-70 (73)
198 PF07814 WAPL: Wings apart-lik 94.6 1.2 2.5E-05 47.2 15.6 243 342-596 21-318 (361)
199 smart00744 RINGv The RING-vari 94.6 0.043 9.3E-07 39.5 3.3 41 251-291 1-49 (49)
200 KOG3800 Predicted E3 ubiquitin 94.4 0.027 5.8E-07 55.3 2.7 49 251-299 2-55 (300)
201 PF12755 Vac14_Fab1_bd: Vacuol 94.4 0.18 3.8E-06 42.2 7.2 90 483-575 3-94 (97)
202 PF12717 Cnd1: non-SMC mitotic 94.4 1.7 3.8E-05 40.8 15.0 92 355-455 1-93 (178)
203 KOG3039 Uncharacterized conser 94.4 0.027 5.8E-07 53.6 2.5 36 246-281 40-75 (303)
204 PF08569 Mo25: Mo25-like; Int 94.4 1.9 4.2E-05 44.7 16.4 156 461-618 71-237 (335)
205 KOG4653 Uncharacterized conser 94.4 0.7 1.5E-05 52.2 13.6 216 394-618 737-963 (982)
206 COG5181 HSH155 U2 snRNP splice 94.4 0.66 1.4E-05 50.4 12.9 155 383-540 687-874 (975)
207 KOG1077 Vesicle coat complex A 94.2 6.1 0.00013 44.0 19.9 248 349-609 153-423 (938)
208 COG5219 Uncharacterized conser 94.2 0.019 4.1E-07 64.4 1.1 50 246-295 1466-1523(1525)
209 KOG2817 Predicted E3 ubiquitin 94.1 0.035 7.7E-07 57.0 2.9 46 246-291 331-381 (394)
210 KOG4151 Myosin assembly protei 94.1 1.7 3.7E-05 48.9 16.0 240 373-617 493-739 (748)
211 KOG1493 Anaphase-promoting com 94.1 0.025 5.3E-07 43.5 1.3 48 248-295 30-81 (84)
212 COG5209 RCD1 Uncharacterized p 94.0 1.6 3.4E-05 41.8 13.2 146 400-545 116-277 (315)
213 KOG1785 Tyrosine kinase negati 94.0 0.023 5E-07 57.7 1.3 47 251-297 371-418 (563)
214 KOG1060 Vesicle coat complex A 93.9 4.9 0.00011 45.3 18.7 209 344-577 37-246 (968)
215 PF06371 Drf_GBD: Diaphanous G 93.9 0.39 8.3E-06 45.4 9.5 109 467-577 67-187 (187)
216 KOG1645 RING-finger-containing 93.9 0.03 6.4E-07 57.3 1.8 61 249-309 4-70 (463)
217 PF11701 UNC45-central: Myosin 93.8 0.4 8.8E-06 44.1 9.0 145 425-573 3-155 (157)
218 KOG2999 Regulator of Rac1, req 93.8 1 2.3E-05 48.4 12.9 152 467-618 84-241 (713)
219 KOG4692 Predicted E3 ubiquitin 93.7 0.04 8.6E-07 55.1 2.2 47 248-295 421-467 (489)
220 KOG2611 Neurochondrin/leucine- 93.5 4.7 0.0001 42.9 16.8 146 430-577 16-182 (698)
221 PF12719 Cnd3: Nuclear condens 93.4 1 2.2E-05 46.2 12.4 169 384-559 26-208 (298)
222 PF14447 Prok-RING_4: Prokaryo 93.4 0.037 8.1E-07 40.1 1.2 47 248-297 6-52 (55)
223 KOG2274 Predicted importin 9 [ 93.3 1.6 3.6E-05 49.6 14.1 217 396-619 462-689 (1005)
224 PF14570 zf-RING_4: RING/Ubox 93.3 0.061 1.3E-06 38.1 2.0 43 252-294 1-47 (48)
225 PF12717 Cnd1: non-SMC mitotic 93.2 3.4 7.3E-05 38.8 14.4 92 397-496 1-93 (178)
226 PF06025 DUF913: Domain of Unk 93.1 5.7 0.00012 42.1 17.5 220 361-600 3-254 (379)
227 KOG2979 Protein involved in DN 93.0 0.077 1.7E-06 51.3 3.0 45 249-293 176-222 (262)
228 KOG0825 PHD Zn-finger protein 92.8 0.025 5.4E-07 62.2 -0.7 48 248-296 122-172 (1134)
229 KOG2274 Predicted importin 9 [ 92.7 5.8 0.00013 45.4 17.2 230 354-591 462-703 (1005)
230 PF11698 V-ATPase_H_C: V-ATPas 92.6 0.29 6.3E-06 42.3 5.7 70 549-618 44-114 (119)
231 KOG1248 Uncharacterized conser 92.6 3.8 8.2E-05 48.3 16.0 221 353-578 665-899 (1176)
232 PF12719 Cnd3: Nuclear condens 92.6 4.8 0.0001 41.3 15.8 169 342-518 26-208 (298)
233 PF13764 E3_UbLigase_R4: E3 ub 92.5 24 0.00051 41.1 22.5 238 339-579 114-408 (802)
234 PF06371 Drf_GBD: Diaphanous G 92.5 0.77 1.7E-05 43.4 9.3 110 342-453 66-186 (187)
235 KOG1060 Vesicle coat complex A 92.4 3.3 7.1E-05 46.7 14.6 208 341-578 286-497 (968)
236 COG5175 MOT2 Transcriptional r 92.3 0.088 1.9E-06 52.4 2.5 50 248-298 14-67 (480)
237 PF08045 CDC14: Cell division 92.3 1.2 2.7E-05 44.0 10.4 96 358-453 107-207 (257)
238 KOG1001 Helicase-like transcri 92.2 0.037 8.1E-07 62.5 -0.3 47 250-297 455-502 (674)
239 PF02985 HEAT: HEAT repeat; I 92.0 0.25 5.3E-06 31.6 3.5 28 386-413 2-29 (31)
240 KOG1240 Protein kinase contain 91.9 3.4 7.3E-05 48.7 14.5 229 385-620 423-686 (1431)
241 KOG0827 Predicted E3 ubiquitin 91.8 0.11 2.3E-06 53.0 2.4 48 250-297 5-58 (465)
242 KOG2611 Neurochondrin/leucine- 91.8 4.6 0.0001 42.9 14.2 186 347-536 16-225 (698)
243 KOG4265 Predicted E3 ubiquitin 91.8 0.099 2.2E-06 53.1 2.1 47 248-295 289-336 (349)
244 KOG0301 Phospholipase A2-activ 91.7 3.7 8.1E-05 45.3 13.9 167 347-518 549-727 (745)
245 KOG1571 Predicted E3 ubiquitin 91.7 0.1 2.2E-06 53.0 2.2 49 243-295 299-347 (355)
246 KOG3665 ZYG-1-like serine/thre 91.6 6.3 0.00014 45.3 16.6 169 448-616 494-694 (699)
247 PF02891 zf-MIZ: MIZ/SP-RING z 91.5 0.22 4.8E-06 35.9 3.2 44 250-293 3-50 (50)
248 PF06025 DUF913: Domain of Unk 91.3 3.5 7.6E-05 43.7 13.3 122 380-501 101-238 (379)
249 PF12460 MMS19_C: RNAPII trans 91.3 3.6 7.8E-05 44.4 13.8 186 343-538 190-396 (415)
250 PF12031 DUF3518: Domain of un 91.0 0.44 9.5E-06 46.1 5.6 120 399-519 81-228 (257)
251 PF05918 API5: Apoptosis inhib 90.7 5.2 0.00011 44.2 14.1 132 342-491 23-158 (556)
252 KOG0915 Uncharacterized conser 90.7 15 0.00033 44.6 18.5 274 342-617 956-1263(1702)
253 KOG0567 HEAT repeat-containing 90.7 17 0.00038 35.9 16.0 225 344-620 5-250 (289)
254 KOG1240 Protein kinase contain 90.7 4.1 8.9E-05 48.1 13.6 228 342-578 462-726 (1431)
255 KOG2032 Uncharacterized conser 90.7 7.3 0.00016 41.7 14.5 226 393-619 267-531 (533)
256 PF12031 DUF3518: Domain of un 90.6 1.1 2.5E-05 43.4 7.9 86 524-609 141-235 (257)
257 KOG1566 Conserved protein Mo25 90.5 14 0.0003 37.5 15.5 218 341-558 78-310 (342)
258 PF08324 PUL: PUL domain; Int 90.2 3.1 6.8E-05 41.8 11.4 184 387-570 66-267 (268)
259 COG5220 TFB3 Cdk activating ki 90.2 0.1 2.2E-06 49.5 0.5 47 248-294 9-63 (314)
260 KOG0211 Protein phosphatase 2A 90.1 8.7 0.00019 44.3 15.7 211 354-572 249-461 (759)
261 KOG4185 Predicted E3 ubiquitin 89.7 0.3 6.4E-06 50.2 3.5 63 250-312 4-77 (296)
262 PF02985 HEAT: HEAT repeat; I 89.7 0.69 1.5E-05 29.5 4.0 29 550-578 2-30 (31)
263 KOG4275 Predicted E3 ubiquitin 89.6 0.23 5E-06 48.7 2.4 41 249-294 300-341 (350)
264 KOG1820 Microtubule-associated 89.4 6.8 0.00015 45.5 14.3 185 345-536 256-443 (815)
265 PF12460 MMS19_C: RNAPII trans 89.3 12 0.00026 40.3 15.7 130 466-598 271-414 (415)
266 PF05918 API5: Apoptosis inhib 89.2 9.4 0.0002 42.2 14.5 98 341-450 58-158 (556)
267 KOG1058 Vesicle coat complex C 88.9 15 0.00033 41.4 15.7 132 430-581 322-467 (948)
268 KOG1788 Uncharacterized conser 88.9 8.4 0.00018 44.8 13.9 251 363-618 663-981 (2799)
269 KOG0211 Protein phosphatase 2A 88.9 13 0.00029 42.8 15.9 266 344-618 357-624 (759)
270 KOG0915 Uncharacterized conser 88.7 7.1 0.00015 47.3 13.9 230 343-580 819-1071(1702)
271 COG5209 RCD1 Uncharacterized p 88.6 4.1 8.9E-05 39.0 9.8 101 480-580 114-221 (315)
272 KOG3113 Uncharacterized conser 88.4 0.36 7.9E-06 46.4 2.8 51 247-300 109-163 (293)
273 KOG4535 HEAT and armadillo rep 88.4 0.52 1.1E-05 49.8 4.1 181 398-578 405-604 (728)
274 COG5240 SEC21 Vesicle coat com 87.8 47 0.001 36.5 19.2 110 341-457 222-335 (898)
275 KOG2930 SCF ubiquitin ligase, 87.7 0.36 7.8E-06 39.7 1.9 27 266-293 80-106 (114)
276 PF14668 RICTOR_V: Rapamycin-i 87.6 3.1 6.6E-05 32.7 7.0 66 524-590 4-70 (73)
277 KOG1943 Beta-tubulin folding c 87.3 49 0.0011 39.1 19.0 225 342-574 341-608 (1133)
278 PF08324 PUL: PUL domain; Int 87.3 7.8 0.00017 38.9 11.9 136 478-613 122-268 (268)
279 KOG3665 ZYG-1-like serine/thre 87.1 18 0.00039 41.7 15.9 192 365-574 494-694 (699)
280 KOG4653 Uncharacterized conser 87.0 21 0.00046 40.9 15.6 183 339-536 724-918 (982)
281 KOG3161 Predicted E3 ubiquitin 86.6 0.34 7.3E-06 52.6 1.6 38 248-288 10-51 (861)
282 PF12530 DUF3730: Protein of u 86.4 35 0.00077 33.5 17.3 137 386-536 2-151 (234)
283 PF14500 MMS19_N: Dos2-interac 86.2 39 0.00085 33.9 17.7 214 346-580 3-240 (262)
284 KOG1967 DNA repair/transcripti 85.8 4.2 9.1E-05 46.6 9.5 146 466-613 867-1018(1030)
285 KOG1820 Microtubule-associated 85.5 15 0.00033 42.7 14.1 184 429-618 257-442 (815)
286 KOG0414 Chromosome condensatio 85.4 9.2 0.0002 45.2 12.2 131 353-496 934-1065(1251)
287 PF14225 MOR2-PAG1_C: Cell mor 85.4 43 0.00093 33.6 16.1 163 425-602 60-240 (262)
288 COG5109 Uncharacterized conser 84.7 0.67 1.5E-05 46.0 2.5 47 245-291 332-383 (396)
289 KOG2114 Vacuolar assembly/sort 84.6 0.42 9E-06 53.8 1.2 44 245-292 836-880 (933)
290 PF11707 Npa1: Ribosome 60S bi 84.5 54 0.0012 34.1 16.8 157 343-499 57-241 (330)
291 KOG1941 Acetylcholine receptor 83.9 0.48 1E-05 48.4 1.1 44 248-291 364-412 (518)
292 KOG2062 26S proteasome regulat 83.1 46 0.001 37.7 15.7 158 384-563 519-680 (929)
293 PF01347 Vitellogenin_N: Lipop 82.6 29 0.00063 39.5 15.2 167 385-574 396-586 (618)
294 PF05290 Baculo_IE-1: Baculovi 82.4 1.3 2.7E-05 38.6 2.9 50 248-297 79-134 (140)
295 KOG3002 Zn finger protein [Gen 82.1 1.2 2.5E-05 45.3 3.1 61 245-312 44-105 (299)
296 KOG1991 Nuclear transport rece 82.0 75 0.0016 37.3 17.3 134 383-518 409-558 (1010)
297 PF10367 Vps39_2: Vacuolar sor 81.8 0.58 1.3E-05 39.8 0.7 33 245-277 74-108 (109)
298 KOG2025 Chromosome condensatio 81.6 18 0.00039 40.6 11.9 126 441-572 62-188 (892)
299 COG5627 MMS21 DNA repair prote 81.2 0.98 2.1E-05 43.0 2.0 57 249-305 189-249 (275)
300 cd03561 VHS VHS domain family; 81.0 11 0.00023 33.5 8.6 73 341-413 36-112 (133)
301 cd03569 VHS_Hrs_Vps27p VHS dom 80.8 11 0.00023 34.0 8.6 73 341-413 40-114 (142)
302 KOG0414 Chromosome condensatio 80.2 15 0.00033 43.5 11.3 141 426-579 920-1066(1251)
303 KOG0883 Cyclophilin type, U bo 79.9 1.2 2.6E-05 45.6 2.3 52 249-301 40-91 (518)
304 smart00638 LPD_N Lipoprotein N 79.9 90 0.0019 35.2 17.8 132 426-574 394-542 (574)
305 KOG1991 Nuclear transport rece 79.8 1.3E+02 0.0029 35.3 22.3 288 299-610 386-721 (1010)
306 KOG2956 CLIP-associating prote 79.7 81 0.0018 33.9 15.5 145 467-618 330-476 (516)
307 KOG4535 HEAT and armadillo rep 79.6 25 0.00053 37.8 11.6 261 356-621 269-561 (728)
308 KOG0298 DEAD box-containing he 79.1 0.59 1.3E-05 55.1 -0.1 45 246-291 1150-1195(1394)
309 KOG2137 Protein kinase [Signal 79.1 11 0.00024 42.4 9.5 135 382-521 387-522 (700)
310 KOG1967 DNA repair/transcripti 79.0 5.7 0.00012 45.6 7.4 147 383-530 866-1018(1030)
311 PF11865 DUF3385: Domain of un 79.0 16 0.00035 33.6 9.4 144 385-535 11-156 (160)
312 KOG1566 Conserved protein Mo25 79.0 80 0.0017 32.2 15.9 200 379-579 74-288 (342)
313 KOG2933 Uncharacterized conser 78.4 11 0.00024 38.0 8.4 142 341-493 87-232 (334)
314 PF10363 DUF2435: Protein of u 78.4 6.8 0.00015 32.4 5.9 70 342-413 3-72 (92)
315 KOG1788 Uncharacterized conser 78.2 1E+02 0.0022 36.7 16.4 221 340-578 718-983 (2799)
316 COG5098 Chromosome condensatio 77.7 12 0.00025 41.9 8.9 107 509-617 301-413 (1128)
317 cd03568 VHS_STAM VHS domain fa 77.6 15 0.00032 33.2 8.4 73 341-413 36-110 (144)
318 KOG1058 Vesicle coat complex C 77.5 99 0.0021 35.3 16.0 30 508-537 318-347 (948)
319 cd03561 VHS VHS domain family; 76.6 13 0.00029 32.9 7.9 72 549-620 38-113 (133)
320 smart00288 VHS Domain present 76.2 19 0.00042 31.9 8.8 73 341-413 36-111 (133)
321 PF11701 UNC45-central: Myosin 76.1 6.2 0.00014 36.2 5.7 96 355-451 56-156 (157)
322 KOG1078 Vesicle coat complex C 75.7 1.6E+02 0.0034 33.9 17.6 183 385-580 246-459 (865)
323 KOG1243 Protein kinase [Genera 75.4 40 0.00086 38.0 12.4 254 347-617 259-513 (690)
324 PF14726 RTTN_N: Rotatin, an a 75.1 27 0.00059 29.1 8.7 67 506-572 29-95 (98)
325 PF05883 Baculo_RING: Baculovi 75.0 3.7 7.9E-05 36.1 3.6 45 249-294 26-79 (134)
326 PHA02825 LAP/PHD finger-like p 74.7 3.5 7.6E-05 37.2 3.5 47 248-295 7-59 (162)
327 cd03569 VHS_Hrs_Vps27p VHS dom 74.6 17 0.00037 32.7 8.0 72 548-619 41-114 (142)
328 cd03567 VHS_GGA VHS domain fam 74.4 22 0.00048 31.9 8.6 72 341-412 37-115 (139)
329 KOG1814 Predicted E3 ubiquitin 74.4 3.8 8.2E-05 42.6 4.1 34 248-281 183-219 (445)
330 PRK14707 hypothetical protein; 73.8 2.8E+02 0.0061 36.0 19.7 267 344-615 165-441 (2710)
331 KOG2933 Uncharacterized conser 73.6 21 0.00046 36.2 8.9 139 427-577 90-234 (334)
332 KOG2062 26S proteasome regulat 73.6 42 0.00091 38.1 11.9 125 384-524 554-682 (929)
333 KOG2956 CLIP-associating prote 73.5 1.4E+02 0.003 32.3 16.8 187 342-536 286-477 (516)
334 PF11865 DUF3385: Domain of un 73.5 31 0.00068 31.7 9.7 141 467-615 11-153 (160)
335 cd03568 VHS_STAM VHS domain fa 73.3 15 0.00033 33.1 7.4 72 548-619 37-110 (144)
336 KOG0301 Phospholipase A2-activ 73.3 1E+02 0.0022 34.7 14.6 171 395-570 555-740 (745)
337 PF14225 MOR2-PAG1_C: Cell mor 73.2 1.1E+02 0.0023 30.8 17.4 214 347-577 12-254 (262)
338 PF14569 zf-UDP: Zinc-binding 73.2 5 0.00011 31.4 3.5 47 249-295 9-62 (80)
339 PF14726 RTTN_N: Rotatin, an a 73.1 25 0.00053 29.4 7.9 72 460-531 23-95 (98)
340 KOG1943 Beta-tubulin folding c 72.8 1.1E+02 0.0023 36.5 15.3 225 383-615 340-607 (1133)
341 PF08746 zf-RING-like: RING-li 72.7 3.9 8.5E-05 28.4 2.7 39 252-290 1-43 (43)
342 KOG1940 Zn-finger protein [Gen 72.5 2.3 5E-05 42.4 2.0 43 249-292 158-204 (276)
343 KOG2025 Chromosome condensatio 72.1 21 0.00045 40.2 9.2 127 480-614 60-188 (892)
344 KOG2032 Uncharacterized conser 72.1 18 0.00038 39.0 8.4 145 470-617 262-414 (533)
345 PF08167 RIX1: rRNA processing 72.0 19 0.00041 33.3 7.9 108 426-536 26-143 (165)
346 KOG3899 Uncharacterized conser 72.0 2.3 5E-05 41.8 1.8 29 269-297 327-367 (381)
347 PF12530 DUF3730: Protein of u 70.9 1.1E+02 0.0024 30.0 16.3 129 352-494 11-150 (234)
348 PF10363 DUF2435: Protein of u 70.5 17 0.00038 29.9 6.5 71 509-581 5-76 (92)
349 PF14446 Prok-RING_1: Prokaryo 70.4 3.7 8.1E-05 30.0 2.2 29 249-277 5-37 (54)
350 KOG4464 Signaling protein RIC- 69.7 1.6E+02 0.0034 31.3 17.3 103 355-457 110-234 (532)
351 smart00638 LPD_N Lipoprotein N 69.3 1.2E+02 0.0026 34.2 15.3 206 385-616 312-542 (574)
352 COG5218 YCG1 Chromosome conden 69.2 56 0.0012 36.1 11.4 102 506-612 90-192 (885)
353 PF14666 RICTOR_M: Rapamycin-i 69.0 1.2E+02 0.0025 29.7 12.9 128 480-618 78-224 (226)
354 KOG4362 Transcriptional regula 68.8 1.9 4E-05 48.2 0.5 49 248-296 20-70 (684)
355 KOG2137 Protein kinase [Signal 68.0 34 0.00075 38.6 9.9 129 425-561 389-521 (700)
356 PF11707 Npa1: Ribosome 60S bi 67.9 1.6E+02 0.0034 30.6 20.0 155 386-540 58-241 (330)
357 KOG4718 Non-SMC (structural ma 67.6 3.2 7E-05 39.1 1.7 48 249-297 181-229 (235)
358 cd03572 ENTH_epsin_related ENT 67.5 16 0.00035 31.8 5.9 71 549-619 39-119 (122)
359 PF01347 Vitellogenin_N: Lipop 67.3 1.6E+02 0.0035 33.4 16.0 125 387-528 434-581 (618)
360 COG5656 SXM1 Importin, protein 67.1 2.4E+02 0.0052 32.4 17.9 138 342-481 408-557 (970)
361 PF14500 MMS19_N: Dos2-interac 67.1 1.4E+02 0.0031 29.9 15.6 218 388-620 3-238 (262)
362 KOG4739 Uncharacterized protei 66.6 2.2 4.7E-05 41.3 0.4 48 252-302 6-55 (233)
363 PF05605 zf-Di19: Drought indu 66.4 2.7 5.9E-05 30.8 0.8 38 248-292 1-39 (54)
364 cd03567 VHS_GGA VHS domain fam 66.2 28 0.00062 31.1 7.5 72 548-619 38-116 (139)
365 smart00288 VHS Domain present 66.0 33 0.00072 30.4 7.9 71 549-619 38-111 (133)
366 PF10272 Tmpp129: Putative tra 65.9 3.8 8.3E-05 42.6 2.1 29 270-298 314-354 (358)
367 PHA02862 5L protein; Provision 65.4 4.7 0.0001 35.7 2.2 45 251-296 4-54 (156)
368 PF12906 RINGv: RING-variant d 65.2 5.7 0.00012 28.2 2.3 39 252-290 1-47 (47)
369 COG5116 RPN2 26S proteasome re 65.0 23 0.00049 38.8 7.5 21 63-83 61-81 (926)
370 PF00790 VHS: VHS domain; Int 64.6 20 0.00043 32.1 6.3 72 341-412 41-117 (140)
371 KOG1020 Sister chromatid cohes 64.5 69 0.0015 39.4 11.9 112 384-502 816-928 (1692)
372 PF06844 DUF1244: Protein of u 64.1 4.3 9.4E-05 30.6 1.5 13 270-282 11-23 (68)
373 COG5116 RPN2 26S proteasome re 63.7 28 0.00061 38.1 7.9 98 465-576 550-649 (926)
374 KOG2034 Vacuolar sorting prote 63.3 5.2 0.00011 45.8 2.6 37 245-281 813-851 (911)
375 COG5218 YCG1 Chromosome conden 63.3 32 0.00068 37.9 8.2 100 466-569 91-191 (885)
376 PHA03096 p28-like protein; Pro 63.1 4.8 0.0001 40.7 2.1 43 250-292 179-231 (284)
377 PF07814 WAPL: Wings apart-lik 61.8 2.2E+02 0.0047 30.1 14.7 91 386-476 23-116 (361)
378 PF00790 VHS: VHS domain; Int 61.4 31 0.00068 30.8 7.0 71 549-619 43-118 (140)
379 PF14353 CpXC: CpXC protein 59.7 6.9 0.00015 34.5 2.3 45 250-295 2-49 (128)
380 COG5098 Chromosome condensatio 59.5 57 0.0012 36.8 9.4 108 468-580 301-418 (1128)
381 COG1675 TFA1 Transcription ini 56.7 20 0.00044 33.3 4.9 52 247-314 111-163 (176)
382 COG3813 Uncharacterized protei 56.6 12 0.00025 28.8 2.6 41 261-304 21-61 (84)
383 PF08167 RIX1: rRNA processing 56.4 39 0.00084 31.2 6.9 112 466-580 25-146 (165)
384 PF11864 DUF3384: Domain of un 56.2 3.1E+02 0.0066 30.1 16.0 145 467-617 154-328 (464)
385 PF10521 DUF2454: Protein of u 56.0 1E+02 0.0022 31.3 10.4 71 466-536 119-203 (282)
386 KOG1832 HIV-1 Vpr-binding prot 55.7 57 0.0012 37.8 8.9 152 358-509 574-787 (1516)
387 PF07191 zinc-ribbons_6: zinc- 55.4 0.76 1.6E-05 35.4 -3.8 41 249-295 1-41 (70)
388 KOG3579 Predicted E3 ubiquitin 54.5 11 0.00024 37.1 2.9 43 247-289 266-316 (352)
389 KOG1812 Predicted E3 ubiquitin 54.4 7.3 0.00016 41.4 1.8 47 249-295 146-203 (384)
390 PRK06266 transcription initiat 53.6 37 0.00081 31.8 6.2 53 247-315 115-168 (178)
391 KOG3970 Predicted E3 ubiquitin 53.2 23 0.00051 33.7 4.7 44 251-294 52-104 (299)
392 PF08216 CTNNBL: Catenin-beta- 52.0 15 0.00034 31.1 3.0 43 359-402 63-105 (108)
393 PLN02189 cellulose synthase 51.5 10 0.00022 44.7 2.5 47 249-295 34-87 (1040)
394 PF08216 CTNNBL: Catenin-beta- 51.0 18 0.00039 30.7 3.2 41 484-524 64-104 (108)
395 PF06906 DUF1272: Protein of u 50.2 16 0.00035 26.8 2.4 27 268-297 28-54 (57)
396 PLN02436 cellulose synthase A 49.7 11 0.00025 44.4 2.5 47 249-295 36-89 (1094)
397 KOG0825 PHD Zn-finger protein 49.6 16 0.00034 41.3 3.4 38 245-282 92-136 (1134)
398 KOG1243 Protein kinase [Genera 49.4 2E+02 0.0044 32.6 11.8 72 504-577 327-398 (690)
399 KOG1020 Sister chromatid cohes 49.1 2.5E+02 0.0055 34.9 13.1 107 425-538 816-923 (1692)
400 TIGR00634 recN DNA repair prot 48.9 2.2E+02 0.0047 32.1 12.6 53 32-86 181-233 (563)
401 PF10521 DUF2454: Protein of u 48.2 1.4E+02 0.0031 30.2 10.0 49 385-433 120-170 (282)
402 PRK14707 hypothetical protein; 47.8 7.9E+02 0.017 32.3 20.4 273 342-618 205-487 (2710)
403 PF08506 Cse1: Cse1; InterPro 47.7 3.7E+02 0.008 28.5 14.8 126 441-572 227-370 (370)
404 KOG4445 Uncharacterized conser 47.6 18 0.00039 36.1 3.1 33 249-281 115-150 (368)
405 PF12830 Nipped-B_C: Sister ch 46.7 1.9E+02 0.0042 27.2 10.1 126 467-601 9-141 (187)
406 COG5236 Uncharacterized conser 46.1 15 0.00032 37.3 2.3 48 247-294 59-107 (493)
407 cd00197 VHS_ENTH_ANTH VHS, ENT 45.8 1.5E+02 0.0032 25.2 8.5 70 341-410 36-112 (115)
408 PF07800 DUF1644: Protein of u 45.5 9.1 0.0002 34.6 0.7 21 248-268 1-21 (162)
409 KOG3268 Predicted E3 ubiquitin 45.4 17 0.00038 33.2 2.5 46 250-295 166-228 (234)
410 PRK12495 hypothetical protein; 45.2 16 0.00036 34.9 2.4 24 248-275 41-64 (226)
411 PF04499 SAPS: SIT4 phosphatas 44.1 1.4E+02 0.003 32.9 9.6 111 506-620 20-150 (475)
412 PLN02638 cellulose synthase A 44.1 16 0.00035 43.3 2.7 47 249-295 17-70 (1079)
413 KOG2038 CAATT-binding transcri 43.4 5.7E+02 0.012 29.6 14.0 103 466-577 304-409 (988)
414 PF10274 ParcG: Parkin co-regu 43.0 2.6E+02 0.0057 26.3 10.0 74 466-539 38-112 (183)
415 PF12231 Rif1_N: Rap1-interact 42.8 1.9E+02 0.0042 30.6 10.4 174 395-576 4-203 (372)
416 cd08050 TAF6 TATA Binding Prot 42.5 1.6E+02 0.0034 30.9 9.5 141 427-576 180-339 (343)
417 PF14666 RICTOR_M: Rapamycin-i 42.4 3.4E+02 0.0073 26.5 13.4 129 398-535 78-224 (226)
418 KOG1949 Uncharacterized conser 42.2 3.3E+02 0.0071 31.2 11.8 144 428-577 177-331 (1005)
419 PF14838 INTS5_C: Integrator c 42.2 5.9E+02 0.013 29.3 14.8 191 343-546 182-400 (696)
420 PF03854 zf-P11: P-11 zinc fin 42.0 12 0.00026 26.4 0.7 31 266-297 18-48 (50)
421 KOG4231 Intracellular membrane 41.8 13 0.00028 39.9 1.3 62 558-619 338-399 (763)
422 PF06676 DUF1178: Protein of u 41.8 11 0.00024 34.0 0.6 23 266-293 9-41 (148)
423 PLN02195 cellulose synthase A 41.7 19 0.00041 42.3 2.7 45 251-295 8-59 (977)
424 PF04641 Rtf2: Rtf2 RING-finge 41.4 22 0.00048 35.6 2.9 36 248-283 33-69 (260)
425 PF00619 CARD: Caspase recruit 41.4 1E+02 0.0023 24.4 6.4 72 29-102 2-74 (85)
426 PLN02915 cellulose synthase A 41.3 19 0.00041 42.7 2.6 47 249-295 15-68 (1044)
427 KOG1815 Predicted E3 ubiquitin 40.8 22 0.00048 38.7 3.0 36 247-282 68-104 (444)
428 PF12830 Nipped-B_C: Sister ch 40.7 95 0.0021 29.3 6.9 71 508-583 9-80 (187)
429 COG2176 PolC DNA polymerase II 40.4 21 0.00047 42.5 2.8 44 242-297 907-952 (1444)
430 COG3492 Uncharacterized protei 40.2 15 0.00033 29.6 1.1 13 270-282 42-54 (104)
431 COG5656 SXM1 Importin, protein 40.1 6.5E+02 0.014 29.2 16.8 120 383-504 407-537 (970)
432 cd00730 rubredoxin Rubredoxin; 39.8 14 0.00031 26.6 0.9 13 245-257 30-42 (50)
433 KOG0392 SNF2 family DNA-depend 39.7 5.5E+02 0.012 31.7 13.7 233 341-580 76-328 (1549)
434 KOG1087 Cytosolic sorting prot 39.3 1.6E+02 0.0034 32.2 9.0 69 342-410 38-109 (470)
435 cd00197 VHS_ENTH_ANTH VHS, ENT 38.7 1.5E+02 0.0032 25.2 7.4 69 549-617 38-113 (115)
436 PRK04023 DNA polymerase II lar 38.7 24 0.00052 41.4 2.9 47 248-297 625-676 (1121)
437 PF10235 Cript: Microtubule-as 38.1 22 0.00048 29.1 1.8 37 249-295 44-80 (90)
438 PF12726 SEN1_N: SEN1 N termin 38.0 3.4E+02 0.0074 31.7 12.4 124 466-590 441-568 (727)
439 smart00531 TFIIE Transcription 38.0 35 0.00075 30.9 3.3 38 247-296 97-135 (147)
440 KOG3842 Adaptor protein Pellin 37.7 26 0.00057 35.1 2.6 31 265-296 376-415 (429)
441 cd03565 VHS_Tom1 VHS domain fa 37.4 3E+02 0.0065 24.6 9.3 73 341-413 37-115 (141)
442 PF04216 FdhE: Protein involve 37.3 5.9 0.00013 40.4 -2.0 45 248-293 171-220 (290)
443 PF06012 DUF908: Domain of Unk 36.7 1.5E+02 0.0032 30.8 8.3 76 440-515 237-324 (329)
444 PF00301 Rubredoxin: Rubredoxi 36.4 16 0.00034 26.0 0.6 13 245-257 30-42 (47)
445 KOG0309 Conserved WD40 repeat- 36.4 24 0.00052 39.7 2.3 44 249-293 1028-1074(1081)
446 PRK11088 rrmA 23S rRNA methylt 36.0 20 0.00043 36.2 1.6 25 249-273 2-29 (272)
447 PF11791 Aconitase_B_N: Aconit 35.6 42 0.00091 30.3 3.3 25 550-574 96-120 (154)
448 KOG1410 Nuclear transport rece 35.6 7.3E+02 0.016 28.4 19.0 81 541-623 248-338 (1082)
449 COG5183 SSM4 Protein involved 35.5 33 0.00071 39.0 3.2 49 247-295 10-66 (1175)
450 PF04821 TIMELESS: Timeless pr 35.1 2.2E+02 0.0049 28.5 9.0 17 521-537 134-150 (266)
451 cd00350 rubredoxin_like Rubred 35.0 28 0.0006 22.6 1.6 11 283-293 16-26 (33)
452 PF11864 DUF3384: Domain of un 35.0 6.4E+02 0.014 27.6 19.6 63 549-618 214-284 (464)
453 PF13811 DUF4186: Domain of un 34.9 27 0.00058 29.6 1.9 20 261-281 64-86 (111)
454 PF10571 UPF0547: Uncharacteri 34.6 21 0.00046 21.9 0.9 8 252-259 3-10 (26)
455 PF09889 DUF2116: Uncharacteri 34.3 24 0.00051 26.5 1.3 15 283-297 2-16 (59)
456 cd08050 TAF6 TATA Binding Prot 34.2 2.6E+02 0.0056 29.2 9.6 141 343-493 179-338 (343)
457 PF14663 RasGEF_N_2: Rapamycin 33.9 97 0.0021 26.7 5.3 38 549-587 9-46 (115)
458 KOG4464 Signaling protein RIC- 33.7 3.8E+02 0.0083 28.6 10.2 132 428-559 48-198 (532)
459 KOG2462 C2H2-type Zn-finger pr 33.6 24 0.00053 35.0 1.7 47 247-297 159-228 (279)
460 PF13251 DUF4042: Domain of un 32.5 4.3E+02 0.0093 24.9 10.4 140 358-497 2-176 (182)
461 PLN02400 cellulose synthase 32.5 22 0.00048 42.3 1.4 47 249-295 36-89 (1085)
462 PF12783 Sec7_N: Guanine nucle 32.3 3.9E+02 0.0084 24.4 9.6 78 501-580 67-149 (168)
463 PF14838 INTS5_C: Integrator c 32.1 8.4E+02 0.018 28.1 15.2 82 507-588 310-400 (696)
464 KOG0314 Predicted E3 ubiquitin 31.7 26 0.00056 37.6 1.6 66 245-312 215-284 (448)
465 PF06012 DUF908: Domain of Unk 31.0 1.5E+02 0.0033 30.7 7.2 75 399-473 237-323 (329)
466 cd03565 VHS_Tom1 VHS domain fa 30.7 2.9E+02 0.0062 24.8 8.0 71 549-619 39-115 (141)
467 KOG0396 Uncharacterized conser 30.7 39 0.00086 34.9 2.6 48 249-296 330-380 (389)
468 PF07923 N1221: N1221-like pro 30.4 1.1E+02 0.0023 31.3 5.9 57 339-395 57-127 (293)
469 PF04821 TIMELESS: Timeless pr 30.2 5.7E+02 0.012 25.6 14.1 146 376-537 32-209 (266)
470 KOG2199 Signal transducing ada 30.1 1.9E+02 0.0041 30.4 7.3 72 548-619 45-118 (462)
471 PF06416 DUF1076: Protein of u 30.0 42 0.0009 28.5 2.2 52 246-298 37-94 (113)
472 TIGR01562 FdhE formate dehydro 29.6 15 0.00032 37.6 -0.6 43 249-292 184-232 (305)
473 KOG2932 E3 ubiquitin ligase in 29.5 24 0.00052 35.4 0.9 43 249-294 90-133 (389)
474 cd08330 CARD_ASC_NALP1 Caspase 29.3 1.8E+02 0.0039 23.3 5.8 58 31-89 3-61 (82)
475 KOG4231 Intracellular membrane 28.9 1.3E+02 0.0027 32.8 6.0 63 392-454 336-399 (763)
476 PLN03205 ATR interacting prote 28.2 1.8E+02 0.0039 30.7 6.8 111 509-620 325-447 (652)
477 PF14663 RasGEF_N_2: Rapamycin 28.0 1.3E+02 0.0028 25.9 5.1 40 507-546 8-47 (115)
478 PF12726 SEN1_N: SEN1 N termin 27.8 6.9E+02 0.015 29.2 12.6 152 385-540 442-612 (727)
479 PF10497 zf-4CXXC_R1: Zinc-fin 27.5 59 0.0013 27.5 2.8 26 268-293 37-70 (105)
480 PF14631 FancD2: Fanconi anaem 27.4 3.5E+02 0.0076 34.3 10.4 110 383-497 430-544 (1426)
481 KOG1791 Uncharacterized conser 27.3 1.1E+03 0.023 29.9 13.7 221 375-618 1430-1659(1758)
482 cd08329 CARD_BIRC2_BIRC3 Caspa 26.9 1.3E+02 0.0028 24.9 4.6 64 26-90 6-70 (94)
483 PRK03564 formate dehydrogenase 26.8 21 0.00046 36.5 -0.0 44 248-292 186-234 (309)
484 PRK14892 putative transcriptio 26.6 52 0.0011 27.5 2.3 38 244-295 16-53 (99)
485 KOG1100 Predicted E3 ubiquitin 26.6 33 0.00072 33.0 1.3 38 252-294 161-199 (207)
486 PF08389 Xpo1: Exportin 1-like 26.5 3.6E+02 0.0078 23.5 8.2 123 400-531 4-148 (148)
487 PF12074 DUF3554: Domain of un 26.1 4E+02 0.0087 27.6 9.5 228 356-603 1-257 (339)
488 COG0497 RecN ATPase involved i 25.7 9.8E+02 0.021 26.8 15.3 53 30-84 175-227 (557)
489 KOG1848 Uncharacterized conser 25.7 2.6E+02 0.0057 34.4 8.4 173 424-604 839-1030(1610)
490 COG4068 Uncharacterized protei 25.5 64 0.0014 23.9 2.2 20 283-302 7-26 (64)
491 COG2178 Predicted RNA-binding 25.3 5.7E+02 0.012 24.4 8.9 128 12-140 20-155 (204)
492 PF11791 Aconitase_B_N: Aconit 25.2 2E+02 0.0043 26.1 5.7 27 509-535 96-122 (154)
493 PF10083 DUF2321: Uncharacteri 25.1 2.6E+02 0.0056 25.5 6.4 91 268-376 27-120 (158)
494 COG1592 Rubrerythrin [Energy p 24.8 46 0.001 30.7 1.8 12 249-260 134-145 (166)
495 PF04710 Pellino: Pellino; In 24.5 25 0.00054 36.7 0.0 47 248-295 327-401 (416)
496 KOG1992 Nuclear export recepto 24.4 1.2E+03 0.026 27.5 12.7 174 384-559 498-706 (960)
497 PF14631 FancD2: Fanconi anaem 24.3 4.6E+02 0.0099 33.3 10.6 109 424-537 430-543 (1426)
498 PF13251 DUF4042: Domain of un 24.2 6E+02 0.013 23.9 12.4 136 400-538 2-176 (182)
499 cd03572 ENTH_epsin_related ENT 24.0 3.8E+02 0.0083 23.4 7.2 71 341-411 37-117 (122)
500 KOG1952 Transcription factor N 24.0 59 0.0013 37.5 2.7 45 248-292 190-244 (950)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=284.09 Aligned_cols=280 Identities=23% Similarity=0.261 Sum_probs=253.5
Q ss_pred cHhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChhhHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCc
Q 006877 340 DRAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~ 416 (627)
....+..+++.|.++ +++.+..|+..|+.+++.++++|..+++ .|+||.|+.+|++++..++++|+.+|.+|+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 356899999999977 7899999999999999999999999996 7999999999999999999999999999999999
Q ss_pred chHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC---chhhHHhh-hhCcHHHHHHHhccCC---HHHHHHHHHH
Q 006877 417 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI---DENKVAIG-AAGAIPALIRLLCDGT---PRGKKDAATA 489 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~---~~~~~~i~-~~g~i~~Lv~lL~~~~---~~~~~~a~~a 489 (627)
++..|+..|++++|+++|++++++.+++|+++|++|+.+ +.++..++ ..|++|+|+.++++++ .-++..++.+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 44555544 5799999999999975 2345677899
Q ss_pred HHHhccCCCchHH-HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCC-HHHHH
Q 006877 490 IFNLSIYQGNKAR-AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGS-PRNRE 566 (627)
Q Consensus 490 L~nL~~~~~~~~~-l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~ 566 (627)
|+||+.+++++.. +++.|+|+.|+.+|.++++.++..|+.+|.+++.+ ++++..+++.|+||.|+++|++++ +.+|+
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9999999999865 68999999999999999999999999999988875 778999999999999999998754 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCC---------hHHHHHHHHHHHHHHh
Q 006877 567 NAAAVLWAICTGDAEQLKIARELDAEEALKELSESGT---------DRAKRKAGSILELLQR 619 (627)
Q Consensus 567 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~---------~~~k~~A~~lL~~l~~ 619 (627)
+|+++|.+||.++++++..+++.|+++.|++++.+++ ...++.|.|+|.++..
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999998654 3458999999999875
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=7.3e-27 Score=277.01 Aligned_cols=283 Identities=24% Similarity=0.302 Sum_probs=251.4
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~ 417 (627)
..+.++++.|+++|.+++...|..|++.|++++..+++++..++++|+||+|+++|.+++..++++|+|+|.|++.++++
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q 521 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED 521 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH
Confidence 45668999999999999999999999999999998999999999999999999999999999999999999999998766
Q ss_pred hHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-------------------------------------
Q 006877 418 KGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK------------------------------------- 459 (627)
Q Consensus 418 k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~------------------------------------- 459 (627)
...++ ..|++++|+++|++++.+.++.|+++|++|+...+..
T Consensus 522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 55555 7899999999999999999999999999996332111
Q ss_pred HH-hhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC-CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-
Q 006877 460 VA-IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS- 536 (627)
Q Consensus 460 ~~-i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~- 536 (627)
.. ....|+++.|+++++++++..++.|+++|.|++.+. +.+..++..|+|++|+.+|.+.+.+++..|+++|.+|+.
T Consensus 602 ~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred HHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC
Confidence 00 113489999999999999999999999999999854 456789999999999999999999999999999999996
Q ss_pred -ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 537 -HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 537 -~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
..+++..+++.|++++|+++|.+++..+++.|+.+|.+++... +....+...|+++.|+.++++|++++|+.|+++|.
T Consensus 682 ~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~ 760 (2102)
T PLN03200 682 IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALA 760 (2102)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3445667889999999999999999999999999999999987 46677888999999999999999999999999999
Q ss_pred HHHhHH
Q 006877 616 LLQRID 621 (627)
Q Consensus 616 ~l~~~~ 621 (627)
.|.+..
T Consensus 761 ~L~~~~ 766 (2102)
T PLN03200 761 QLLKHF 766 (2102)
T ss_pred HHHhCC
Confidence 887543
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-27 Score=247.24 Aligned_cols=278 Identities=23% Similarity=0.297 Sum_probs=251.1
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchH
Q 006877 342 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKG 419 (627)
Q Consensus 342 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~ 419 (627)
|.++.+|..|... ++..|.+|+|+|.+++.++.+.-..++++|++|.++.+|.+++..+++.|+|+|+|++.+ +..|.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 6899999999754 589999999999999999999999999999999999999999999999999999999998 56688
Q ss_pred HHhhcCChHHHHHHHccCCH-HHHHHHHHHHHHhcCCchhhHHhhh-hCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 420 TIVNAGAIPDIVDVLKNGSM-EARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~-e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
.+...|++++|+.++...+. ....+++|+|.||+........+.. ..++|.|..++.+.++.+..+|+|||.+|+.++
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 88899999999999988765 6789999999999988754444444 489999999999999999999999999999877
Q ss_pred CchH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh-HHHHhhCCChHHHHHHHh-cCCHHHHHHHHHHHHH
Q 006877 498 GNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-KTAIGQAEPIPVLMEVIR-TGSPRNRENAAAVLWA 574 (627)
Q Consensus 498 ~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~-~~~i~~~g~v~~Lv~lL~-~~~~~~~~~A~~~L~~ 574 (627)
..+. .+++.|+++.|+++|...+..++..|+.+++|++...+. .+.+++.|+++.|..++. +....+|..|+|++.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 6665 566899999999999999999999999999999996554 566788999999999998 4556699999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 575 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 575 L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
++.+++++++.+++.|++|.|+.+++++.-+.|+.|+|++.++..
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999853
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.6e-27 Score=227.94 Aligned_cols=280 Identities=26% Similarity=0.357 Sum_probs=262.5
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~ 417 (627)
.+..+++..|+..+.+...++|+.++.+|.+|+. -+.+|..++..|++.+|.++-++.|..+|.+|..+|.||....++
T Consensus 122 iv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~En 200 (550)
T KOG4224|consen 122 IVSLLGLDLLILQMMTDGVEVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN 200 (550)
T ss_pred EEeccChHHHHHHhcCCCcEEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh
Confidence 3445677778888877888999999999999996 488999999999999999988999999999999999999999999
Q ss_pred hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhC--cHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 418 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG--AIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
|..++..|++|.||+++++++..+++.+..++.+++.+..++..+++.+ .+|.|+.++++++++++..|..+|.||+.
T Consensus 201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas 280 (550)
T KOG4224|consen 201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS 280 (550)
T ss_pred hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999986 99999999999999999999999999999
Q ss_pred CCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC-HHHHHHHHHHHHH
Q 006877 496 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWA 574 (627)
Q Consensus 496 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~A~~~L~~ 574 (627)
..+....++++|.+|.++++|+++........+.++.|++-++-+...|++.|++.+|+++|+.++ .++|.+|+.+|++
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrn 360 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRN 360 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHH
Confidence 999999999999999999999998888888999999999999999999999999999999999765 6699999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 575 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 575 L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
|+..+...+..+.+.|+|+.|.+++.++...++..-..++..|.
T Consensus 361 LAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 361 LAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred HhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999988888888775
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-26 Score=224.79 Aligned_cols=281 Identities=24% Similarity=0.321 Sum_probs=259.2
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~ 417 (627)
.+..|++..+.++-++.+..+|..+...|.+++ ++.++|..++.+|++|.||.+++++|.++|+.+++++.|++.+..+
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 345577888888778888999999999999998 5889999999999999999999999999999999999999999999
Q ss_pred hHHHhhcC--ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 418 KGTIVNAG--AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 418 k~~i~~~g--~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
|..+++.+ .++.|+++++++++.++..|..+|.+|+.+.++...|.++|.+|.++++|+++.-......+..+.|++.
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi 321 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI 321 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc
Confidence 99999766 9999999999999999999999999999999999999999999999999999887778888899999999
Q ss_pred CCCchHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 006877 496 YQGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 573 (627)
Q Consensus 496 ~~~~~~~l~~~g~v~~Lv~lL~~~~-~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~ 573 (627)
++.|..-++++|++.+|+.+|.-++ .+++..|..+|+||+. +..++..+.+.|++|.+.+++..+.-.+++.-.+++.
T Consensus 322 hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 322 HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 9999999999999999999998754 5599999999999999 5667889999999999999999999889998888888
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 574 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 574 ~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
.|+.++ .....+.+.|+++.|+.+..+.+.+++..|+.+|-+|...
T Consensus 402 ~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 402 QLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 888876 5677899999999999999999999999999999999753
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=8.4e-26 Score=218.91 Aligned_cols=281 Identities=21% Similarity=0.250 Sum_probs=247.7
Q ss_pred ccHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCC-c
Q 006877 339 CDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-S 416 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~-~ 416 (627)
.+.|.++.+++++.+ ...-.+.+|+|.|.+++.........++++|+||.++++|.+++.++++.|+|+|+|++.+. .
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 456789999999954 44557899999999999887777788899999999999999999999999999999999985 5
Q ss_pred chHHHhhcCChHHHHHHHccCCH--HHHHHHHHHHHHhcCCchhhHHhhh-hCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 006877 417 NKGTIVNAGAIPDIVDVLKNGSM--EARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNL 493 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~~~--e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 493 (627)
.|..+.+.|++++++.+|.+... ....++.|+|.||+........-.. +.++|.|.+++.+.++++.-+|+||+..|
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl 270 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL 270 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence 67778899999999999987654 7789999999999976533222222 36899999999999999999999999999
Q ss_pred ccCCCchH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH-HHHhhCCChHHHHHHHhcCCHHHHHHHHHH
Q 006877 494 SIYQGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK-TAIGQAEPIPVLMEVIRTGSPRNRENAAAV 571 (627)
Q Consensus 494 ~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~ 571 (627)
+..+..+. .+++.|+.+.|+++|.+++..++..|+..++|+....+.+ +.+++.|+++.+-.+|.+.-..+|..|+|+
T Consensus 271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT 350 (526)
T COG5064 271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT 350 (526)
T ss_pred ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence 99876666 5678999999999999999999999999999999976654 556788999999999998888999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 572 LWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 572 L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+.|+..++.++.+.+++.+++|+|+.++....-..++.|+|++.+...
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999998753
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-24 Score=224.85 Aligned_cols=285 Identities=22% Similarity=0.247 Sum_probs=252.5
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCH-HHHHHHHHHHHhhccCCc
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDP-RTQEHAVTALLNLSINDS 416 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~nLs~~~~ 416 (627)
..+.|.++.++.++.+.+.+++.+|+|+|.+++.+++..|..+.+.|++++|+.++..++. .+.+++.|+|.||+.+..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999999999999999999999999999999999988765 788999999999998754
Q ss_pred chHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 006877 417 NKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 494 (627)
Q Consensus 417 ~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 494 (627)
....+. -..++|.|..++.+.++++...|+|++.+|+... +.-..+.+.|+++.|+.+|.+.+..++..|++++.|+.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 333322 3567999999999999999999999999999665 45556667799999999999999999999999999999
Q ss_pred cCCCchHH-HHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHH
Q 006877 495 IYQGNKAR-AVRAGIVPPLMRFLK-DAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAV 571 (627)
Q Consensus 495 ~~~~~~~~-l~~~g~v~~Lv~lL~-~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~ 571 (627)
.+.+.... ++..|+++.|..++. ++...++..|++++.|++. +.+..++++++|.+|.|+.+|+++..++|..|+++
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 98877765 668999999999998 4566688999999999998 46688999999999999999999999999999999
Q ss_pred HHHHhcCC-HHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHHh
Q 006877 572 LWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 622 (627)
Q Consensus 572 L~~L~~~~-~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~~ 622 (627)
+.|++.++ ++....+++.|+|++|+.++.-.+.+.-..+...|+++.+..+
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e 439 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGE 439 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 99988754 5677889999999999999988899999999999999876554
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=4.6e-22 Score=193.10 Aligned_cols=280 Identities=17% Similarity=0.174 Sum_probs=246.5
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccC-
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSIN- 414 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~- 414 (627)
..+.++++.++++|.+++.+++.+++|+|.+++.+++..|..+.+.|++.+++.+|.+. +..+.+++.|+|.||+..
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 45778999999999999999999999999999999999999999999999999999876 458889999999999864
Q ss_pred -C-cchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh-hHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHH
Q 006877 415 -D-SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 491 (627)
Q Consensus 415 -~-~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 491 (627)
+ .+...|. .++|.|.+++.+.++++...|+|++.+|+..+.- ...+...|..+.|+++|.+++..++..|++.+.
T Consensus 233 nP~P~w~~is--qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 233 NPPPDWSNIS--QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCchHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 2 3344443 3589999999999999999999999999977644 445566799999999999999999999999999
Q ss_pred HhccCCCchH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHH
Q 006877 492 NLSIYQGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAA 569 (627)
Q Consensus 492 nL~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~ 569 (627)
|+....+.+. .++..|+++.+..+|.++...++..|++.+.|+.. +.+..+++++.+.+|+|+.+|.+....+|..|+
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 9998777665 56789999999999999888999999999999987 567788999999999999999998899999999
Q ss_pred HHHHHHhcC---CHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 570 AVLWAICTG---DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 570 ~~L~~L~~~---~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
|++.|..++ .|+....+++.|+|.+|++++.-.+.++-+.+.-++++.-+
T Consensus 391 WAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 391 WAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 999998874 46788999999999999999998888888888888877643
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=1.3e-17 Score=184.48 Aligned_cols=282 Identities=23% Similarity=0.309 Sum_probs=229.6
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~ 417 (627)
+...+.++.|++.|.+++.+....++..|..|+. ..+|+..+.+.|+|+.|++++.+++.+++..++.+|.|||.+++.
T Consensus 286 M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 286 MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 3456789999999999999999999999999996 778999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccC-CHHHHHHHHHHHHHhccC
Q 006877 418 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~ 496 (627)
|..|+..|++|.|+.+|.++ ..+..+..+|++||.++++|..+...+++|.+++++-++ +.++...++.++.||+.+
T Consensus 365 R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 99999999999999999865 455679999999999999999999999999999987664 455566677777777777
Q ss_pred CCchHHHHHcCChHHHHHhh-------------------------------------cc-CChhhHHHHHHHHHHH----
Q 006877 497 QGNKARAVRAGIVPPLMRFL-------------------------------------KD-AGGGMVDEALAILAIL---- 534 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL-------------------------------------~~-~~~~~~~~Al~~L~~L---- 534 (627)
+.|...+.+.|+++.|++.. .. .+.+..-.++++|+||
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 77766666656665554321 11 1223333455555555
Q ss_pred ----------------------------------------hcChhhHHHHhhCCChHHHHHHHhcC--CHHHHHHHHHHH
Q 006877 535 ----------------------------------------ASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVL 572 (627)
Q Consensus 535 ----------------------------------------~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~A~~~L 572 (627)
|..+.....+.+.|.++.|+++|... +++.--..+.++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 44444556677889999999999863 477888889999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHHh
Q 006877 573 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 622 (627)
Q Consensus 573 ~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~~ 622 (627)
+++..+.+.....+.+.+++..|++++++.++.+++.|-.+|..+.++++
T Consensus 603 ~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 603 YQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 99999875544445567899999999999999999999999999976553
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.79 E-value=2.5e-17 Score=182.15 Aligned_cols=254 Identities=23% Similarity=0.251 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHcc
Q 006877 357 EEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN 436 (627)
Q Consensus 357 ~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~ 436 (627)
...+-++..|.+++. +..+...+.+.|+|+.|+++|.+++.++...+++.|.+||...+||..|.+.|+++.|++++.+
T Consensus 264 qLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 445567788999995 7788889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhh
Q 006877 437 GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFL 516 (627)
Q Consensus 437 ~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL 516 (627)
++.+....++.+|+|||.+++.|..|++.|.+|.|+.+|.+++ .+..++.+|+|||..++++..+...+++|.+++++
T Consensus 343 ~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 343 ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQML 420 (708)
T ss_pred CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHH
Confidence 9999999999999999999999999999999999999998654 45668999999999999999999999999999987
Q ss_pred cc-CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 006877 517 KD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEAL 595 (627)
Q Consensus 517 ~~-~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 595 (627)
.. ++..+...+++++.||+.++.+.+.+.+.|+++.|++......+. ....++.|++.+++.....+. +.+..|
T Consensus 421 l~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L 495 (708)
T PF05804_consen 421 LENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDL 495 (708)
T ss_pred HhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHH
Confidence 65 566667778999999999999999999989999999877554332 245789999999865555444 478888
Q ss_pred HHhhhcC-ChHHHHHHHHHHHHHH
Q 006877 596 KELSESG-TDRAKRKAGSILELLQ 618 (627)
Q Consensus 596 ~~l~~~~-~~~~k~~A~~lL~~l~ 618 (627)
..++.++ ++...-.+..+|.+|.
T Consensus 496 ~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 496 AKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHhhcCCcHHHHHHHHHHHHhcc
Confidence 8888876 6677777888888875
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.77 E-value=2.4e-19 Score=142.05 Aligned_cols=72 Identities=53% Similarity=0.943 Sum_probs=63.1
Q ss_pred CCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcC
Q 006877 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNG 317 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 317 (627)
+|++|.||||+++|.|||++++||||||.+|++|+..++.+||.|+.++....++||..++..|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 588999999999999999999999999999999999878999999999999999999999999999999875
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.73 E-value=1.5e-15 Score=164.29 Aligned_cols=284 Identities=24% Similarity=0.286 Sum_probs=233.1
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC---Cc
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN---DS 416 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~---~~ 416 (627)
....++..+.+|.+.++.+|-.|...|..+++.+...|..+.+.|+|+.||.+|.+.+.++|.+|+++|.||... ++
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence 345788899999999999999999999999999999999999999999999999999999999999999999874 46
Q ss_pred chHHHhhcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHH----------------------------------
Q 006877 417 NKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVA---------------------------------- 461 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~~~~~~---------------------------------- 461 (627)
|+..|.+.++|+.++++|+. ++.++++..+.+|||||++|..+..
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 89999999999999999986 6899999999999999888655442
Q ss_pred ---------------------hhhh-CcHHHHHHHhcc------CCHHHHH-----------------------------
Q 006877 462 ---------------------IGAA-GAIPALIRLLCD------GTPRGKK----------------------------- 484 (627)
Q Consensus 462 ---------------------i~~~-g~i~~Lv~lL~~------~~~~~~~----------------------------- 484 (627)
+.+. |.|..|+..+++ .+.+..+
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 2222 445555555541 1233334
Q ss_pred -------------------------------------------------------------------HHHHHHHHhccCC
Q 006877 485 -------------------------------------------------------------------DAATAIFNLSIYQ 497 (627)
Q Consensus 485 -------------------------------------------------------------------~a~~aL~nL~~~~ 497 (627)
.++.||-||+...
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 4444555554432
Q ss_pred C-----chHHH-HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC------HHHH
Q 006877 498 G-----NKARA-VRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS------PRNR 565 (627)
Q Consensus 498 ~-----~~~~l-~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~------~~~~ 565 (627)
. .+..+ .+..+.++|+++|...+..++..+..+|.||+.+..++..|. .++++.|++.|..+. .++-
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHH
Confidence 1 11122 356678899999999999999999999999999999999988 579999999997532 5677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHHHHhHHhhh
Q 006877 566 ENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQRIDMAV 624 (627)
Q Consensus 566 ~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~l~~~~~~~ 624 (627)
..++.+|.++...+..+...+.+.++++.|+.|..+. ++++.+.|..+|..|..+.++.
T Consensus 630 ~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh 689 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH 689 (717)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999998776 6799999999999998877654
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1e-14 Score=142.33 Aligned_cols=276 Identities=20% Similarity=0.219 Sum_probs=234.5
Q ss_pred hHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcch
Q 006877 342 AAIDALLGKLA--NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNK 418 (627)
Q Consensus 342 ~~i~~Lv~~L~--s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k 418 (627)
.+...++..|. +.+.+.....+..++.-+..+..||..+++.++.|.+...|.. +..++.+.+.+++..|..+++.|
T Consensus 145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR 224 (461)
T KOG4199|consen 145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR 224 (461)
T ss_pred ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence 35556666664 4456777888889999998899999999999999999977765 34467778899999998876543
Q ss_pred ----------HHHhhcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCC----HHHH
Q 006877 419 ----------GTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT----PRGK 483 (627)
Q Consensus 419 ----------~~i~~~g~i~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~ 483 (627)
..|+..|++..|++.++-+ ++.+...+..+|..|+..++.+..|.++|++..|++++.+.+ ....
T Consensus 225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~ 304 (461)
T KOG4199|consen 225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA 304 (461)
T ss_pred eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence 4677788999999999876 688889999999999999999999999999999999998743 2345
Q ss_pred HHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcC
Q 006877 484 KDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTG 560 (627)
Q Consensus 484 ~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~ 560 (627)
+.++..|..|+.++.++..+++.|+.+.++.++.. .++.+...++.++..||- .|++...+++.|+-...++-|+..
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah 384 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH 384 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence 67899999999999999999999999999998843 788999999999999997 688888999999999999999864
Q ss_pred C--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 561 S--PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 561 ~--~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
. ..++.+|++.+.|+...+.+++..+...| ++.|+......++.....|..+|+-|.
T Consensus 385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 385 PVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 3 56899999999999999988888887765 778888888888888888888888774
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.59 E-value=2.6e-14 Score=160.18 Aligned_cols=260 Identities=23% Similarity=0.251 Sum_probs=222.6
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC------------CHHHHHHHHHHHHhhccCC-cchHHHh-hcCC
Q 006877 361 AAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST------------DPRTQEHAVTALLNLSIND-SNKGTIV-NAGA 426 (627)
Q Consensus 361 ~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~------------~~~~~~~A~~~L~nLs~~~-~~k~~i~-~~g~ 426 (627)
.|+..|..++. +.++|..+-+.|++..+-.||.-+ +..+|..|..+|.||.+.+ .||..+- ..|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 67778888886 889999999999999988877431 3468999999999998864 5666555 6899
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhhHHhhhhCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcc-CCCchHH
Q 006877 427 IPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSI-YQGNKAR 502 (627)
Q Consensus 427 i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~~~~~ 502 (627)
++.+|..|.+..+++....+.+|.|||=.. ..+..+-+.|.+..|+... .+......+..+.|||||+. +.+|+..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 999999999999999999999999998443 3455666679999888765 44566788999999999998 5789999
Q ss_pred HHH-cCChHHHHHhhcc----CChhhHHHHHHHHHHHhc----ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 006877 503 AVR-AGIVPPLMRFLKD----AGGGMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 573 (627)
Q Consensus 503 l~~-~g~v~~Lv~lL~~----~~~~~~~~Al~~L~~L~~----~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~ 573 (627)
|.. .|++..|+.+|.- ....+++.|-+||.|+++ .++.|+.+.+.+++..|+..|++.+-.+--+++.+||
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLW 555 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLW 555 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhh
Confidence 987 6999999999965 345788999999999877 4677888889999999999999999989999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHH
Q 006877 574 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 574 ~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~ 621 (627)
||...+++..+.+++.|+++.|..|+.+.+....+-++.+|++|-.+.
T Consensus 556 NLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 556 NLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999988888999999886543
No 15
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.58 E-value=2.3e-13 Score=134.31 Aligned_cols=226 Identities=22% Similarity=0.234 Sum_probs=188.2
Q ss_pred HhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh
Q 006877 381 AEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 459 (627)
Q Consensus 381 ~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~ 459 (627)
.+.+.++.|+.+|+. .|+.+++.|+.++.|.+..+.++..|.+.|+++.+..+|.++++.++..|+++|.|++.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 556778999999986 5899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhCcHHHHHHHhccC--CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 006877 460 VAIGAAGAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 537 (627)
Q Consensus 460 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~ 537 (627)
..|-. +++.+.+...+. +..++..++++|.||+..++.+..+. +.++.++.+|..++..++..++++|.||+.+
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88754 577777665553 67888999999999998877766664 4799999999999999999999999999999
Q ss_pred hhhHHHHhhCCChHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCHH--------------HHHHHHHcC-cHHHHHHhhhc
Q 006877 538 QEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDAE--------------QLKIARELD-AEEALKELSES 601 (627)
Q Consensus 538 ~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~A~~~L~~L~~~~~~--------------~~~~~~~~g-~i~~L~~l~~~ 601 (627)
+.....++..+++..++.+++.. +.+.-..++.+..||..+-.. -...+.+.+ ..+.|..+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h 244 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANH 244 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence 99999999899999999999875 567788899999998653221 112222323 45667777777
Q ss_pred CChHHHHHH
Q 006877 602 GTDRAKRKA 610 (627)
Q Consensus 602 ~~~~~k~~A 610 (627)
.++++|.+.
T Consensus 245 ~d~ev~~~v 253 (254)
T PF04826_consen 245 PDPEVKEQV 253 (254)
T ss_pred CCHHHhhhc
Confidence 777777653
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.57 E-value=2.5e-15 Score=116.21 Aligned_cols=63 Identities=60% Similarity=0.986 Sum_probs=59.9
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHH
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 312 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 312 (627)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|+.+++...+++|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5789999999999999999999999999999986 67899999999999999999999999988
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=6.6e-13 Score=131.09 Aligned_cols=194 Identities=23% Similarity=0.290 Sum_probs=173.2
Q ss_pred ccHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc
Q 006877 339 CDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~ 417 (627)
.+.+.++.|+..|.+ .++.++..++..+.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+++|.|++.+.++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 456788999999985 579999999999999875 789999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 418 KGTIVNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~--~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
+..|-. .++.+++...+. +.+++..++.+|.+|+..+++...+. +.++.++.+|.+|+..++..++++|.||+.
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 888743 577777765554 56888999999999999888877765 479999999999999999999999999999
Q ss_pred CCCchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcC
Q 006877 496 YQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASH 537 (627)
Q Consensus 496 ~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~ 537 (627)
++.....++.++++..++.++.. .+.++...++.++.|+..+
T Consensus 164 np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 164 NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999977 4678889999999999774
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.4e-12 Score=127.59 Aligned_cols=264 Identities=16% Similarity=0.230 Sum_probs=217.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHhhc-cCCcchHHHhhcCCh
Q 006877 351 LANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLS-INDSNKGTIVNAGAI 427 (627)
Q Consensus 351 L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~nLs-~~~~~k~~i~~~g~i 427 (627)
-.+++.....+++..|..+....+ .+.+..+...++++|.. ++.++-...+..+..-+ .++.||..+++.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 345667778889999988886544 45677788899999865 35555555555555554 468899999999999
Q ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhH----------HhhhhCcHHHHHHHhccC-CHHHHHHHHHHHHHhcc
Q 006877 428 PDIVDVLKN-GSMEARENAAATLFSLSVIDENKV----------AIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSI 495 (627)
Q Consensus 428 ~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~~~~~----------~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~ 495 (627)
+.+...|.. |...+...+.|++.-|..+++.|. .|+..|++..|++.+..+ ++.....++.+|..|+.
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999977754 445677888899998877776554 455568889999999876 68889999999999999
Q ss_pred CCCchHHHHHcCChHHHHHhhcc-CCh---hhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHh--cCCHHHHHHHH
Q 006877 496 YQGNKARAVRAGIVPPLMRFLKD-AGG---GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR--TGSPRNRENAA 569 (627)
Q Consensus 496 ~~~~~~~l~~~g~v~~Lv~lL~~-~~~---~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~--~~~~~~~~~A~ 569 (627)
.++.+..+++.|++..|+.++.+ ++. .+...++..|..|+.+.+.+..|++.|+.+.++.++. +.+|.+-+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999999999999987 333 3457789999999999999999999999999999885 46789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC--ChHHHHHHHHHHHHHH
Q 006877 570 AVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQ 618 (627)
Q Consensus 570 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~--~~~~k~~A~~lL~~l~ 618 (627)
.++..||-..|++...+++.|+-...++-++.. ...++++|.++++++.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV 402 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888877765 4567899999999995
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.49 E-value=5.4e-13 Score=149.89 Aligned_cols=226 Identities=23% Similarity=0.233 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Ccc-hHHHhhcCChHHHHHH
Q 006877 357 EEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSN-KGTIVNAGAIPDIVDV 433 (627)
Q Consensus 357 ~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~-k~~i~~~g~i~~Lv~l 433 (627)
..+..|...|-+|+..+..|+..+... |++..+|..|.+...++....+.+|.||+.. +.| ++.+.+.|-+..|+.+
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 467888899999999888898888765 9999999999998888888889999999986 444 5555588999999887
Q ss_pred -HccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhh-CcHHHHHHHhccC----CHHHHHHHHHHHHHhcc----CCCchHH
Q 006877 434 -LKNGSMEARENAAATLFSLSVID-ENKVAIGAA-GAIPALIRLLCDG----TPRGKKDAATAIFNLSI----YQGNKAR 502 (627)
Q Consensus 434 -L~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~-g~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~----~~~~~~~ 502 (627)
|+...+......+.+||||+.+. +||..|... |++..|+.+|... ...+.+.|-.+|.|.+. +.+.|..
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 55556677888999999999776 899999987 9999999999764 46778889999998765 4556667
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 503 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 503 l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
+.+++++..|+++|++.+..++.+++++||||+. +++.++.+++.|+++.|..++++.+..+-+-++++|.||..+.|.
T Consensus 526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 7889999999999999999999999999999987 688899999999999999999999999999999999999988864
Q ss_pred H
Q 006877 582 Q 582 (627)
Q Consensus 582 ~ 582 (627)
.
T Consensus 606 k 606 (2195)
T KOG2122|consen 606 K 606 (2195)
T ss_pred h
Confidence 3
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.49 E-value=1.5e-11 Score=134.86 Aligned_cols=276 Identities=17% Similarity=0.172 Sum_probs=222.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
....+.|...|.+.++.++..+++.|..+..++......+.+.+.++.++.+|.++|..+...|+.+|.+|+.++.+-..
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 34677888999999999999999999999987777777888899999999999999999999999999999998888778
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 499 (627)
+...+.+..|..++...+..+|..+..++.+++... +....+..+|.++.++..++++|.-++.+++.+|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 888888999999999888889999999999997554 5666677779999999999998888999999999999999999
Q ss_pred hHHHHHcCChHHHHHhhccC--Ch---h-hHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 006877 500 KARAVRAGIVPPLMRFLKDA--GG---G-MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 573 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~~~--~~---~-~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~ 573 (627)
...+.+.|+++.|..++.+. ++ . +.-..+...++++........-.-...+..+.+++.+.++..+..|..++.
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLG 315 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 99999999999999999762 22 1 223345677778774221111111235566677777888999999999999
Q ss_pred HHhcCCHHHHHHH-HHc-Cc----HHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 574 AICTGDAEQLKIA-REL-DA----EEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 574 ~L~~~~~~~~~~~-~~~-g~----i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
.+|+.. +....+ ... +. +........++..+.|..+..+|..+
T Consensus 316 ~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 316 QIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 999766 444444 333 23 44455556778888999999988887
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.35 E-value=8.1e-11 Score=118.75 Aligned_cols=282 Identities=12% Similarity=0.102 Sum_probs=228.0
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC----C---CHHHHHHHHHHHHhhc
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS----T---DPRTQEHAVTALLNLS 412 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----~---~~~~~~~A~~~L~nLs 412 (627)
+++.++.|.+..+|.+.++-.+..+.|.+++..+.++|..+.+.|+-..++++|+. + +.+....+...|.|-.
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 45688888888899999999999999999999999999999999998888888865 2 2355666778888876
Q ss_pred cC-CcchHHHhhcCChHHHHHHHccC----------------------------------------------CHHHHHHH
Q 006877 413 IN-DSNKGTIVNAGAIPDIVDVLKNG----------------------------------------------SMEARENA 445 (627)
Q Consensus 413 ~~-~~~k~~i~~~g~i~~Lv~lL~~~----------------------------------------------~~e~~~~a 445 (627)
.+ ++.+.+.++.|+++.|...+.-+ .++.++..
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 65 56788899999999877665322 11234566
Q ss_pred HHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc-CCH-------HHHHHHHHHHHHhccCCCchHHHHHcC-ChHHHHHhh
Q 006877 446 AATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTP-------RGKKDAATAIFNLSIYQGNKARAVRAG-IVPPLMRFL 516 (627)
Q Consensus 446 a~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~-------~~~~~a~~aL~nL~~~~~~~~~l~~~g-~v~~Lv~lL 516 (627)
..+|...+.++..+-.+++.|.+..+++++++ .+. ...+.++....-|...++...++...+ +++.++..+
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence 67777778888888888899999999999986 322 123344555555566677777777766 889999999
Q ss_pred ccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 006877 517 KDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-----GSPRNRENAAAVLWAICTGDAEQLKIARELDA 591 (627)
Q Consensus 517 ~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-----~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~ 591 (627)
.+.+......+.-+++|+++..+....+++.|.+..|+++|.. |+-+.+..++.+|.|+.--- .+...+...|+
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGv 403 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGV 403 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhccccch
Confidence 9999998989999999999999999999999999999998853 55678888999999999855 46778899999
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHhHHh
Q 006877 592 EEALKELSESGTDRAKRKAGSILELLQRIDM 622 (627)
Q Consensus 592 i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~~ 622 (627)
.+.++..++...|++.-+-...|+++++.++
T Consensus 404 teaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 9999999999999999999999998887665
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.34 E-value=2.3e-10 Score=125.59 Aligned_cols=275 Identities=15% Similarity=0.128 Sum_probs=219.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh-h
Q 006877 345 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-N 423 (627)
Q Consensus 345 ~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~-~ 423 (627)
+.+...|.+.+.+....++..|..+.... ..... ..+..+.|...|.++++.++..+++.|.+++.+++....++ +
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 34778888888887788888888887532 22222 56778999999999999999999999999988776644444 7
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC-chHH
Q 006877 424 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKAR 502 (627)
Q Consensus 424 ~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~ 502 (627)
.+.++.++..+.+++.++...|+.+|.+|+..+.....+...+.+..|..++...+..++..+..++.+++...+ ....
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 899999999999999999999999999999988877788888889999999988788888899999999987654 4455
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC--CH---HHH-HHHHHHHHHHh
Q 006877 503 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SP---RNR-ENAAAVLWAIC 576 (627)
Q Consensus 503 l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~---~~~-~~A~~~L~~L~ 576 (627)
+.+.|+++.++..|.+.|.-++..|+.+|..|+..+.+...+.+.|+++.|..++... +| ... -..+....+++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 6678999999999999888889999999999999999999999999999999999753 23 111 12234555666
Q ss_pred cCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHHhh
Q 006877 577 TGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRIDMA 623 (627)
Q Consensus 577 ~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~~~ 623 (627)
...|..+.. .-...+..|.+++.++++..+..|...+..+....+.
T Consensus 278 ~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G 323 (503)
T PF10508_consen 278 RVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG 323 (503)
T ss_pred hcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH
Confidence 654443321 1124566777888889999999999999988754443
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2e-10 Score=117.19 Aligned_cols=278 Identities=18% Similarity=0.243 Sum_probs=202.6
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
....+..||..|.-.+.+...-.+.-|..|+. -.+|+..+.+.|.|..|++++...+++++...+..|.|+|++..++.
T Consensus 302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 45688899999988888877778888888885 67889999999999999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHH-HHhccCCC
Q 006877 420 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI-FNLSIYQG 498 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL-~nL~~~~~ 498 (627)
.++..|.+|.++.+|.+++. ..-|...|+.+|.+++.+..+....+|+.+.+.+-++...-...++.++ -|||.+..
T Consensus 381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 99999999999999988643 3457888999999999999999999999999888766433333334433 47776655
Q ss_pred chHHHHHcCChHHH-------------------------------------HHhhcc-CChhhHHHHHHHHHHHhcCh--
Q 006877 499 NKARAVRAGIVPPL-------------------------------------MRFLKD-AGGGMVDEALAILAILASHQ-- 538 (627)
Q Consensus 499 ~~~~l~~~g~v~~L-------------------------------------v~lL~~-~~~~~~~~Al~~L~~L~~~~-- 538 (627)
|...+++..++..| ...+.. .+....-.++++|+||.-..
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 54444333333322 222222 22334456778887775411
Q ss_pred ------------------------------------------hhHHHHhhCCChHHHHHHHhcC--CHHHHHHHHHHHHH
Q 006877 539 ------------------------------------------EGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWA 574 (627)
Q Consensus 539 ------------------------------------------~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~A~~~L~~ 574 (627)
.....+..+|.++.|+++|+.. +++.-..-..+...
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q 618 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ 618 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 1122233467888888888763 34455555556666
Q ss_pred HhcCCHHHHHHHH-HcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHH
Q 006877 575 ICTGDAEQLKIAR-ELDAEEALKELSESGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 575 L~~~~~~~~~~~~-~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~ 621 (627)
+..+. ..+..+. +...-..|++++.+.+..+++.+-.+|-.+.+++
T Consensus 619 ~l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 619 FLKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 66653 3444444 4445568899999999999999888888886543
No 24
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3e-11 Score=113.44 Aligned_cols=250 Identities=19% Similarity=0.241 Sum_probs=161.8
Q ss_pred hhhhhHHHHHHHHhhhhhhHHhhhhcCCCCChHHHHhHHHHHHHHHHHHHHHHhcCCCc--------hhHHHHhhHHHHH
Q 006877 30 FFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKSTNDGS--------KLYQCLQRDKIAA 101 (627)
Q Consensus 30 ~~~~~~~~l~~~~~ll~~~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~S--------kl~ll~~~~~~~~ 101 (627)
.-|+.|..+..+.+ +|.-+....+--...++|-|. ++.-....++|+..= +-|++.++.....
T Consensus 22 ~~k~y~~ai~~y~r-------aI~~nP~~~~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSR-------AICINPTVASYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred chhhhchHHHHHHH-------HHhcCCCcchhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 44555555554433 343332223345678888887 777777777875432 3499999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH-HHHhhCCCCCchhhhHHHH-HHhhccCCCCHHHHHHHHhhcC
Q 006877 102 QFHQLTEQIEAALSDIPYDKLDLSEEVREQIELVHVQ-FRRAKGRPDSPDLQLDHDL-AVAQKERDPDPAILGRLSEKLH 179 (627)
Q Consensus 102 ~~~~~~~~l~~~L~~~p~~~~~~s~~~~e~i~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~ 179 (627)
.|.+.+..|.++++....+.+...+|+-.++..++.+ +.-.+.+...++.++...+ +.+.+++ +++.-+...+ |
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~--~~~~s~~~~N--~ 168 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDR--ERELSEWQEN--G 168 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhhHHHHHHHHhccch--hhHHHHHHHc--C
Confidence 9999999999999998888888888888765555543 1111111112233333333 2222211 1111111111 2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHhhcccCCCCccccccccccCCCCCCCCCCccCCCCcccc
Q 006877 180 LRTINDLKNESLAFHELVISSGGDPGDCFEEISSLLRKLKDFVLIENPEVDITEGEKGLMKHRSPVIPDDFRCPISLELM 259 (627)
Q Consensus 180 l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Cpic~~~m 259 (627)
.+..+.+.-..-++ .+-+..+.+|..+.+++.. +....++|+..+|.|+.++|
T Consensus 169 -~sde~~k~~q~~~~-------~~~d~~~kel~elf~~v~e-------------------~rk~rEvpd~lcgkIt~el~ 221 (284)
T KOG4642|consen 169 -ESDEHLKTMQVPIE-------QDHDHTTKELSELFSKVDE-------------------KRKKREVPDYLCGKITLELM 221 (284)
T ss_pred -CChHHHhhhcchhH-------HHHHHHHHHHHHHHHHHHH-------------------HhccccccchhhhhhhHHhh
Confidence 12222211111110 1222344555555555532 22334788999999999999
Q ss_pred cCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcCCC
Q 006877 260 KDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 319 (627)
Q Consensus 260 ~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 319 (627)
++||++|+|-||.|.-|.+++.+-++.-|+++.++....++||.+++..|..+...|++.
T Consensus 222 ~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 222 REPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred cCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 999999999999999999999987778999999999999999999999999999988764
No 25
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.26 E-value=1.3e-10 Score=126.31 Aligned_cols=234 Identities=22% Similarity=0.301 Sum_probs=185.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc---hhhHH
Q 006877 386 IPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID---ENKVA 461 (627)
Q Consensus 386 i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~---~~~~~ 461 (627)
+|..+.+|.+.++.+|.+|..-+-.++.. +..|..+-+-|+|+.+|.+|.+.+.+++.+|+++|.||+... +|+..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 67788999999999999999999999885 567888889999999999999999999999999999997553 58899
Q ss_pred hhhhCcHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCc-----------------------------------------
Q 006877 462 IGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGN----------------------------------------- 499 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~----------------------------------------- 499 (627)
|.+.++|+.++++|+. .|.++++....+|+||++++.-
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~ 394 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNV 394 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehh
Confidence 9999999999999986 6889999999999999855222
Q ss_pred --------------hHHHHH-cCChHHHHHhhcc------CChhhHHHHHHHHHHHhcChh-------------------
Q 006877 500 --------------KARAVR-AGIVPPLMRFLKD------AGGGMVDEALAILAILASHQE------------------- 539 (627)
Q Consensus 500 --------------~~~l~~-~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~L~~~~~------------------- 539 (627)
|.+|-+ .|.|..|+..+.. .+...++.|+.+|.||+-.-+
T Consensus 395 tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~ 474 (717)
T KOG1048|consen 395 TGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPG 474 (717)
T ss_pred hhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccccc
Confidence 223333 5778888888763 566778999999999975321
Q ss_pred --------------hHH-------------H--------HhhCCChHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCH---
Q 006877 540 --------------GKT-------------A--------IGQAEPIPVLMEVIR-TGSPRNRENAAAVLWAICTGDA--- 580 (627)
Q Consensus 540 --------------~~~-------------~--------i~~~g~v~~Lv~lL~-~~~~~~~~~A~~~L~~L~~~~~--- 580 (627)
.+. . .....+|..-+.+|. +.++.+.|.++.+|-||+....
T Consensus 475 ~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~ 554 (717)
T KOG1048|consen 475 VGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS 554 (717)
T ss_pred CCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch
Confidence 000 0 000112333344454 4568899999999999998765
Q ss_pred -HHHHHH-HHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 581 -EQLKIA-RELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 581 -~~~~~~-~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
..+..+ .++.+.+.|+++++++++++.+.+..+|++|+.
T Consensus 555 ~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 555 EYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR 595 (717)
T ss_pred hHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence 233444 788999999999999999999999999999975
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.25 E-value=1.1e-10 Score=102.35 Aligned_cols=117 Identities=36% Similarity=0.484 Sum_probs=107.3
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-
Q 006877 379 CIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID- 456 (627)
Q Consensus 379 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~- 456 (627)
.+.+.|+++.|+++|.+++..++..++++|.+++.+ +..+..+.+.|+++.++.+|.+++++++..++++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 356889999999999999999999999999999987 778888888999999999999999999999999999999887
Q ss_pred hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 457 ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 457 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
.....+...|+++.|++++.+++.++++.++++|.||+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 456667778999999999999999999999999999973
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.24 E-value=2.4e-10 Score=100.29 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=109.9
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 502 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
.+++.|+++.|+++|.+.+..++..++.+|++++.. ++....+.+.|+++.++++|.+++++++..|+++|.+|+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467889999999999998899999999999999997 7888888889999999999999999999999999999999998
Q ss_pred HHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 581 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 581 ~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
.....+.+.|+++.|..++..++..+++.|.++|.+|.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 88888899999999999999999999999999999875
No 28
>PRK09687 putative lyase; Provisional
Probab=99.19 E-value=1.7e-09 Score=109.39 Aligned_cols=222 Identities=18% Similarity=0.121 Sum_probs=153.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHH-hcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVEL-LSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
.+..+...+.+.++.++..|++.|..+-.... . ...+++.|..+ +.++++.++..|+.+|+++.......
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--- 125 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--- 125 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---
Confidence 55566666677777777777777777643111 0 12345666666 56667778888888887774322111
Q ss_pred hhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH
Q 006877 422 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 501 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 501 (627)
...+++.+...+.+.++.++..++++|..+. ...+++.|+.+|.+++..++..|+.+|.++....
T Consensus 126 -~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---- 190 (280)
T PRK09687 126 -SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---- 190 (280)
T ss_pred -chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC----
Confidence 1123455666666777788888888776442 2347888888888888888888888888883321
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 502 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
..+++.|+.+|.+.+..++..|+..|+.+-. ..+++.|+..|++++ ++..|+.+|..+...
T Consensus 191 ----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--- 251 (280)
T PRK09687 191 ----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK--- 251 (280)
T ss_pred ----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---
Confidence 1467778888888888888888888876432 247888888888765 456677777766553
Q ss_pred HHHHHHHcCcHHHHHHhhh-cCChHHHHHHHHHHH
Q 006877 582 QLKIARELDAEEALKELSE-SGTDRAKRKAGSILE 615 (627)
Q Consensus 582 ~~~~~~~~g~i~~L~~l~~-~~~~~~k~~A~~lL~ 615 (627)
-+++.|..++. +++++++.+|.+.|.
T Consensus 252 --------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 --------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred --------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 37889999986 789999999998875
No 29
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.16 E-value=1.6e-11 Score=85.33 Aligned_cols=39 Identities=38% Similarity=0.911 Sum_probs=31.2
Q ss_pred CCCCcccccCceeccCcccccHHHHHHHHHhCC---CCCCCc
Q 006877 252 CPISLELMKDPVIVSTGQTYERSCIQKWLDAGH---KTCPKT 290 (627)
Q Consensus 252 Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~---~~CP~~ 290 (627)
||||+++|+|||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998543 468876
No 30
>PRK09687 putative lyase; Provisional
Probab=99.15 E-value=2.5e-09 Score=108.13 Aligned_cols=226 Identities=16% Similarity=0.092 Sum_probs=175.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
.++.|...|.+.+..++..|++.|..+-. ..+++.+..++.++++.+|..|+++|+.|......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 57789999999999999999999887752 34567888999999999999999999998543221
Q ss_pred hcCChHHHHHH-HccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH
Q 006877 423 NAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 501 (627)
Q Consensus 423 ~~g~i~~Lv~l-L~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 501 (627)
...+++.|..+ +++.++.++..|+.+|.++....... ...++..+...+.+.+..++..++.+|.++..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 22357778777 56778999999999999985432111 12356677788888899999999999976642
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 502 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
..+++.|+.+|.+++..+...|+..|+.+.... ..+++.|+..|...++.+|..|+..|..+-. +
T Consensus 158 ----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~- 222 (280)
T PRK09687 158 ----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD--K- 222 (280)
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--h-
Confidence 237899999999999999999999999983321 1467889999999999999999999977533 2
Q ss_pred HHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 582 QLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 582 ~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.+++.|+..+++++ ++..|..+|..+..
T Consensus 223 --------~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 223 --------RVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred --------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 37888888888776 44567777776653
No 31
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.13 E-value=1.3e-08 Score=107.08 Aligned_cols=274 Identities=14% Similarity=0.099 Sum_probs=203.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 344 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 344 i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
...++..|...|+-++..|+..|..+...+..+.......-.+..|...|++. +...+.-|+.+|..|...++.|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566788888899999999999998764443211111111334556666654 57788889999999999999999998
Q ss_pred hcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccC-CHHHHHHHHHHHHHhccCCC-
Q 006877 423 NAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQG- 498 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~--~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~- 498 (627)
+.++++.|+.+|+.. ..+...+++-++|-||..++....+...+.|+.|+++++.. ..++.+-++.+|.||...+.
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999864 46899999999999999988777777779999999999875 47888999999999988432
Q ss_pred ------chHHHHHcCChHHHHHhhcc--CChhhHHHHHHHH-------HHHhc---------------Ch---------h
Q 006877 499 ------NKARAVRAGIVPPLMRFLKD--AGGGMVDEALAIL-------AILAS---------------HQ---------E 539 (627)
Q Consensus 499 ------~~~~l~~~g~v~~Lv~lL~~--~~~~~~~~Al~~L-------~~L~~---------------~~---------~ 539 (627)
....|+..|+.+.+-.+-.. .|+++.+..-.+- ..+++ +| +
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 23356767766544444433 5666654322222 12221 11 1
Q ss_pred hHHHHhhC--CChHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHH
Q 006877 540 GKTAIGQA--EPIPVLMEVIR-TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILEL 616 (627)
Q Consensus 540 ~~~~i~~~--g~v~~Lv~lL~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~ 616 (627)
+...+.+. ..+..|+.+|. +.++.+..-|+.=+..++...|..+..+.+.|+=..+++++.+.+++++..|..+++-
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22233333 35788999996 4557777888888999999999889988999999999999999999999999999886
Q ss_pred H
Q 006877 617 L 617 (627)
Q Consensus 617 l 617 (627)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=9.9e-09 Score=105.08 Aligned_cols=251 Identities=18% Similarity=0.187 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccC
Q 006877 358 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG 437 (627)
Q Consensus 358 ~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~ 437 (627)
..+-|++.|.+++. +......+...+.|..||+.|...+.++.......|..||...+||..+.+.|++..|++++...
T Consensus 279 LLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 34557778888885 55556677788999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhc
Q 006877 438 SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK 517 (627)
Q Consensus 438 ~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~ 517 (627)
.++.+......|+|||.+...+.+++..|.+|.|+.++.+... ...|+..|+.|+.++..+..+....+|+.+++.+.
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987643 33478899999999999999999999999999887
Q ss_pred cCCh-hhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH
Q 006877 518 DAGG-GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI-RTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEAL 595 (627)
Q Consensus 518 ~~~~-~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 595 (627)
++.. ++-...+..--|||.+..+.+.+.+..++..|++.- ...++- -..++.+++.+.+.....+++ .+..|
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdL 509 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDL 509 (791)
T ss_pred hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHH
Confidence 6443 333333344469999888888888777788776643 333332 346677888887766666665 57778
Q ss_pred HHhhhcCChHH-HHHHHHHHHHH
Q 006877 596 KELSESGTDRA-KRKAGSILELL 617 (627)
Q Consensus 596 ~~l~~~~~~~~-k~~A~~lL~~l 617 (627)
..++.+.+++. --.+...|.+|
T Consensus 510 a~i~~nd~~E~F~~EClGtlanL 532 (791)
T KOG1222|consen 510 AGIAKNDNSESFGLECLGTLANL 532 (791)
T ss_pred HHHhhcCchHHHHHHHHHHHhhc
Confidence 88887776554 23333444443
No 33
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.08 E-value=7.5e-11 Score=108.61 Aligned_cols=60 Identities=32% Similarity=0.645 Sum_probs=51.6
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHh---------------CCCCCCCccccccCCCCCccHH
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA---------------GHKTCPKTQQTLLHTALTPNYV 304 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~---------------~~~~CP~~~~~l~~~~l~~n~~ 304 (627)
+..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+..+....++|.+.
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 45578999999999999999999999999999999853 2358999999998888877653
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.07 E-value=4.4e-09 Score=108.78 Aligned_cols=250 Identities=17% Similarity=0.200 Sum_probs=171.9
Q ss_pred HHHHHhhhChhhHHHHHhc---CCHHHHHHHhcC--CCHHHHHHHHHHHHhhccCCcchHHHh-h------cCChHHHHH
Q 006877 365 ELRLLAKRNADNRVCIAEA---GAIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIV-N------AGAIPDIVD 432 (627)
Q Consensus 365 ~L~~L~~~~~~~r~~i~~~---g~i~~Lv~lL~~--~~~~~~~~A~~~L~nLs~~~~~k~~i~-~------~g~i~~Lv~ 432 (627)
.|+.+-+.....|..+.+. +.+..++.+|+. ++.++....+..+..|..++..+..++ . .....+++.
T Consensus 33 ~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ 112 (312)
T PF03224_consen 33 LIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK 112 (312)
T ss_dssp HHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH
Confidence 3333333333344334433 246666666654 588899999999999877655544433 2 236888999
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccC----CHHHHHHHHHHHHHhccCCCchHHHHHcCC
Q 006877 433 VLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG----TPRGKKDAATAIFNLSIYQGNKARAVRAGI 508 (627)
Q Consensus 433 lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~ 508 (627)
++.+++..+...|+.+|..|.........-...+.++.+++.+.+. +.+.+..|+.+|.+|...++.|..+++.|+
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~ 192 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG 192 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence 9999999999999999999987765555544467778888888762 345568899999999999999999999999
Q ss_pred hHHHHHhh------cc-CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCH
Q 006877 509 VPPLMRFL------KD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 509 v~~Lv~lL------~~-~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~A~~~L~~L~~~~~ 580 (627)
++.|..+| .. .+..++..++.++|.|+.+++....+...+.++.|+++++... .++-.-++++|.||+...+
T Consensus 193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 99999999 22 4456788999999999999999999998889999999998654 7788999999999999886
Q ss_pred H-HHHHHHHcCcHHHHHHhhhcC--ChHHHHHHHHHH
Q 006877 581 E-QLKIARELDAEEALKELSESG--TDRAKRKAGSIL 614 (627)
Q Consensus 581 ~-~~~~~~~~g~i~~L~~l~~~~--~~~~k~~A~~lL 614 (627)
+ ....++..|+++.+-.+.... +++..+--..+-
T Consensus 273 ~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 273 KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 5 777788888887777776554 677666554443
No 35
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.9e-08 Score=109.37 Aligned_cols=258 Identities=18% Similarity=0.167 Sum_probs=207.2
Q ss_pred HhHHHHHHHHhcCC-CHHHHHHHHHHHHHHh-hhChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhccC-Cc
Q 006877 341 RAAIDALLGKLANG-NVEEQRAAAGELRLLA-KRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSIN-DS 416 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~-~~ 416 (627)
...+..|+.-|... |+..|.+|+.+|..+. -.+.+.-..|--.-+||.|+.+|++. +.+++.+|+.+|.+|... +.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34788888888765 8889999999987754 33444444444556899999999985 899999999999999875 67
Q ss_pred chHHHhhcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 417 NKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
....+++.++||.|++-|.. ...++.+.++.+|..+|..+ -..+.+.|++...+..|.--+..+++.|+.+..|+|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778899999999977654 56889999999999998765 4667888999999988887778899999999999997
Q ss_pred C--CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc----ChhhHHHHhhCCChHHHHHHHhcCC----HHHH
Q 006877 496 Y--QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGS----PRNR 565 (627)
Q Consensus 496 ~--~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~----~~~~~~~i~~~g~v~~Lv~lL~~~~----~~~~ 565 (627)
. ++.-..++ .++|.|-.+|+..+...++.++-++..++. .++--+.+...|.+.....+|.... ..+.
T Consensus 324 si~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 4 33333333 378999999998888889998888888876 3445677788899999999987532 3466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC
Q 006877 566 ENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG 602 (627)
Q Consensus 566 ~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~ 602 (627)
...+..|..+|++.|-....+...++...|..++...
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 7778889999999998888899999999999988654
No 36
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=2.4e-10 Score=118.28 Aligned_cols=70 Identities=20% Similarity=0.471 Sum_probs=63.3
Q ss_pred CCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHh
Q 006877 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 314 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 314 (627)
..+...+.||||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+.++++.|..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 457788999999999999999999999999999999984 4579999999988889999999999998854
No 37
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.00 E-value=4.4e-08 Score=99.37 Aligned_cols=277 Identities=14% Similarity=0.085 Sum_probs=209.6
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCH-------HHHHHHHHHHHhhcc
Q 006877 343 AIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDP-------RTQEHAVTALLNLSI 413 (627)
Q Consensus 343 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~-------~~~~~A~~~L~nLs~ 413 (627)
.+..+++.+.+. +++...-....+...+ +++..+-.+++.|.+..++.+++. ++. ..-..++....-|..
T Consensus 224 l~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 224 LVFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 455566666543 3444455566666676 588889999999999999999976 322 222333444444445
Q ss_pred CCcchHHHhhcC-ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc-----CCHHHHHHHH
Q 006877 414 NDSNKGTIVNAG-AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-----GTPRGKKDAA 487 (627)
Q Consensus 414 ~~~~k~~i~~~g-~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~ 487 (627)
.++....+...+ .++.++..+++.+......++-++.|++..++++..+++.+.+..|++++.. |+.+.+..++
T Consensus 303 GDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~l 382 (604)
T KOG4500|consen 303 GDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACL 382 (604)
T ss_pred CchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 555544454444 8999999999999999999999999999999999999999999999999964 5678899999
Q ss_pred HHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChh-hHHHHhhC-CChHHHHHHHhcCCHH-H
Q 006877 488 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE-GKTAIGQA-EPIPVLMEVIRTGSPR-N 564 (627)
Q Consensus 488 ~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~-~~~~i~~~-g~v~~Lv~lL~~~~~~-~ 564 (627)
.||.||..-..|+..++.+|+++.++.++....+.++-.-++.+..+....+ ...++.+. ..+..|++.-++++.. +
T Consensus 383 sALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv 462 (604)
T KOG4500|consen 383 SALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGV 462 (604)
T ss_pred HHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchh
Confidence 9999999999999999999999999999999899998888888888877655 33444433 4567777777666543 5
Q ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 565 RENAAAVLWAICTGD--AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 565 ~~~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
--..-+.|..+..+. .+....+.+.|+|..++.++....-..+..|.-+|-.+...
T Consensus 463 ~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 463 AGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred hhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 666677777777763 24556667889999999999888877777777776665543
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.96 E-value=3e-08 Score=102.55 Aligned_cols=220 Identities=18% Similarity=0.169 Sum_probs=163.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHh------cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH
Q 006877 346 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE------AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 346 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~------~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
.+++.+ +.+.+.....+..|..+..+++.....+.. .....++++++.++|.-++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 457888889999999998877766666555 2368889999999999999999999999977654444
Q ss_pred HHhhcCChHHHHHHHccC----CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHh------cc-CCHHHHHHHHH
Q 006877 420 TIVNAGAIPDIVDVLKNG----SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL------CD-GTPRGKKDAAT 488 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~----~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL------~~-~~~~~~~~a~~ 488 (627)
.-...+.++.++..|++. +.+.+..++.+|.+|...+.+|..+.+.++++.|.+++ .+ ...+.+..++-
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 333356678888888763 45667899999999999999999999999999999999 22 24778899999
Q ss_pred HHHHhccCCCchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChh--hHHHHhhCCChHHHHHHHhc---CCH
Q 006877 489 AIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQE--GKTAIGQAEPIPVLMEVIRT---GSP 562 (627)
Q Consensus 489 aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~--~~~~i~~~g~v~~Lv~lL~~---~~~ 562 (627)
+++-|+.+++....+...++|+.|++++.. ..+.++.-++++|.||...+. ....|+..|++ +++..|.. +++
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l-~~l~~L~~rk~~De 299 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL-KTLQNLSERKWSDE 299 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH-HHHHHHHSS--SSH
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH-HHHHHHhcCCCCCH
Confidence 999999999999999999999999999976 677899999999999999766 67777776544 45555543 345
Q ss_pred HHHHH
Q 006877 563 RNREN 567 (627)
Q Consensus 563 ~~~~~ 567 (627)
+..+.
T Consensus 300 dl~ed 304 (312)
T PF03224_consen 300 DLTED 304 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 39
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.1e-06 Score=95.41 Aligned_cols=259 Identities=19% Similarity=0.255 Sum_probs=201.0
Q ss_pred cHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccCCc
Q 006877 340 DRAAIDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~~~ 416 (627)
..++|+.|+..+.+.. ++.++.|++.|..+++ .+|..++. .|+++|+..|..+ |+++...++.+++++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 4579999999998665 8899999999999986 45666654 4589999999875 89999999999999966542
Q ss_pred -------ch----------HHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhhHHhhhh-CcHHHHHHHh
Q 006877 417 -------NK----------GTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAA-GAIPALIRLL 475 (627)
Q Consensus 417 -------~k----------~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~-g~i~~Lv~lL 475 (627)
.+ +.++ ..+.|..++..+...+-.+|..+...|.+|-... +.+..+... -+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 22 1233 5789999999999999999999999999885543 456666665 8899999999
Q ss_pred ccCCHHHHHHHHHHHHHhccCCCchHHHHH-cCChHHHHHhhccC----ChhhHHHHHHHHHHHhc-ChhhHHHHhhCCC
Q 006877 476 CDGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDA----GGGMVDEALAILAILAS-HQEGKTAIGQAEP 549 (627)
Q Consensus 476 ~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~-~g~v~~Lv~lL~~~----~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~ 549 (627)
.+....++-.++-.|..|........+++. .+++..|..++..+ ..-+++.|+..|.||-. +..++..+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 998888899999999999998887777665 78999999999762 23578999999999998 4677888888899
Q ss_pred hHHHHHHHhc---CCH--------HH--HHHHHHHHHHHhcCC--H----HHHHHHHHcCcHHHHHHhhhcC
Q 006877 550 IPVLMEVIRT---GSP--------RN--RENAAAVLWAICTGD--A----EQLKIARELDAEEALKELSESG 602 (627)
Q Consensus 550 v~~Lv~lL~~---~~~--------~~--~~~A~~~L~~L~~~~--~----~~~~~~~~~g~i~~L~~l~~~~ 602 (627)
+|.|..+|.. ++. ++ -..|..++..|..-+ + .+...+.+.+++..|+.++.+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 9999988863 221 11 123445555555422 1 2335677889999999988776
No 40
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.89 E-value=1.2e-09 Score=75.17 Aligned_cols=38 Identities=37% Similarity=0.999 Sum_probs=33.1
Q ss_pred CCCCcccccCc-eeccCcccccHHHHHHHHHhCCCCCCCc
Q 006877 252 CPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKT 290 (627)
Q Consensus 252 Cpic~~~m~dP-v~~~cg~t~~r~ci~~~~~~~~~~CP~~ 290 (627)
||||.+.+.+| ++++|||+||+.||.+|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 46899999999999999996 7889986
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.85 E-value=3.7e-07 Score=107.52 Aligned_cols=238 Identities=20% Similarity=0.167 Sum_probs=128.1
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
+...++.|+..|.+.++.++..|+..|..+.. .++++.|+..|.++++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 44678899999999999999999999887642 346788888888888889988888887763211
Q ss_pred HHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch-------------hhH----HhhhhCcHHHHHHHhccCCHHH
Q 006877 420 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-------------NKV----AIGAAGAIPALIRLLCDGTPRG 482 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~-------------~~~----~i~~~g~i~~Lv~lL~~~~~~~ 482 (627)
...+.+...|.++++.++..|+.+|..+...+. .+. .++..+..+.|..++.++++.+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 012334444444445555554444443321000 000 0000011233444444444455
Q ss_pred HHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChh---------------hHHHHh--
Q 006877 483 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE---------------GKTAIG-- 545 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~---------------~~~~i~-- 545 (627)
+..++.+|..+.... ...++.|..++.++++.++..|+..|..+...+. .|...+
T Consensus 759 R~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 759 RIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred HHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 555554444443211 1225666666666666666666666655543211 011000
Q ss_pred -----hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 546 -----QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 546 -----~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
....++.|+.+|.+.+..+|..|+.+|..+. .++ ...+.|...+++.++.+++.|..+|.
T Consensus 831 L~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 831 LAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1123455555555555556666666655541 111 13445555566666666666666654
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.7e-07 Score=91.18 Aligned_cols=229 Identities=17% Similarity=0.210 Sum_probs=170.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHHHhhcCChHHHH
Q 006877 353 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIV 431 (627)
Q Consensus 353 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv 431 (627)
+.+.+.+..|+..|..+. ++-+|...+...|+.++++.++.+++..+|+.|+++|+..+.+ +..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 456889999999999999 5888999999999999999999999999999999999999886 67788899999999999
Q ss_pred HHHccC-CHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccC--CHHHHHHHHHHHHHhccCCC-chHHHHHc
Q 006877 432 DVLKNG-SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQG-NKARAVRA 506 (627)
Q Consensus 432 ~lL~~~-~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~-~~~~l~~~ 506 (627)
..|.+. +..++..|..++.+|..+. .....+...++...|.+.+.++ +.+.+..++..+..|..... ....+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999865 4677899999999998776 4566677778899999999984 67888899999999887544 33334446
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhC-----CChHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCH
Q 006877 507 GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA-----EPIPVLMEVIR-TGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 507 g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~-----g~v~~Lv~lL~-~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
|+...++.+....+.++.+.++.++..+......+..+... ..+......+. +.....+..-+.-++..|.+.+
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~ 332 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVP 332 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 77777777777777778888887777666643333222211 12222222332 1123344555555666666655
Q ss_pred HH
Q 006877 581 EQ 582 (627)
Q Consensus 581 ~~ 582 (627)
..
T Consensus 333 ~~ 334 (342)
T KOG2160|consen 333 SI 334 (342)
T ss_pred HH
Confidence 43
No 43
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.3e-09 Score=99.44 Aligned_cols=59 Identities=31% Similarity=0.646 Sum_probs=52.1
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHHh--CCCCCCCccccccCCCCCccHHH
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLHTALTPNYVL 305 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~~~~l~~n~~l 305 (627)
-..|.|.||++.-+|||++.|||-||..||.+|+.. +...||+|+..++...++|-+.-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 467999999999999999999999999999999984 34678999999999988886543
No 44
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.77 E-value=1.4e-06 Score=88.90 Aligned_cols=274 Identities=14% Similarity=0.089 Sum_probs=203.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcC-CHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 344 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAG-AIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 344 i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g-~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
-...+..|...++-.+..+.+.|..++......- ...+-. ....|-..+++ .+.+...-|+.+|-.+...++.|..+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKM-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 4567888888888888888899988886433211 111111 12234445555 67778888899999999999999999
Q ss_pred hhcCChHHHHHHHcc--CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccC-CHHHHHHHHHHHHHhccCCC
Q 006877 422 VNAGAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~--~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~ 498 (627)
+..+++..++..+.+ .+..++....-+++-|+.++...+.+...+.|+.|..++++. ..++.+-++.++.|+....+
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~ 274 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGP 274 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999843 368899999999999999998888886679999999999886 47788889999999998663
Q ss_pred -------chHHHHHcCChHHHHHhhcc--CChhhHHHHHHHHH-------HHhcC---------------hh--------
Q 006877 499 -------NKARAVRAGIVPPLMRFLKD--AGGGMVDEALAILA-------ILASH---------------QE-------- 539 (627)
Q Consensus 499 -------~~~~l~~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~-------~L~~~---------------~~-------- 539 (627)
....|+..++.+.+-.+-.. .++++++..-.+-. .|++- |.
T Consensus 275 ~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~ 354 (442)
T KOG2759|consen 275 DRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR 354 (442)
T ss_pred hhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH
Confidence 22345556555554444433 45565543322222 22221 11
Q ss_pred -hHHHHhhC--CChHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 540 -GKTAIGQA--EPIPVLMEVIRTGS-PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 540 -~~~~i~~~--g~v~~Lv~lL~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
+...+.+. ..+..|+.+|+..+ |.+-.-|+-=+.......|+....+.+.|+=..+++++.+.+|+++..|..++.
T Consensus 355 eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 22233332 46889999998765 778888899999999999999999999999999999999999999999999887
Q ss_pred HHH
Q 006877 616 LLQ 618 (627)
Q Consensus 616 ~l~ 618 (627)
.|-
T Consensus 435 ~lm 437 (442)
T KOG2759|consen 435 KLM 437 (442)
T ss_pred HHH
Confidence 664
No 45
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.76 E-value=3e-09 Score=103.72 Aligned_cols=68 Identities=26% Similarity=0.482 Sum_probs=61.4
Q ss_pred CCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHh
Q 006877 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 314 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 314 (627)
+..-++|-||.++|+-|+++|||||||.-||..++. .+..||.|...+....++.|..+..+|+.+..
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNF 87 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence 446689999999999999999999999999999997 67789999999999999999999999987643
No 46
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.75 E-value=1.8e-06 Score=101.86 Aligned_cols=203 Identities=24% Similarity=0.228 Sum_probs=115.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh--------------ChhhHHHHHh------cCCHHHHHHHhcCCCHHH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKR--------------NADNRVCIAE------AGAIPLLVELLSSTDPRT 400 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~--------------~~~~r~~i~~------~g~i~~Lv~lL~~~~~~~ 400 (627)
...++.|+..|.+.++.++..|+..|..+... ++..|...++ .+-...|+..|.++|+.+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~V 730 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRV 730 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHH
Confidence 45788899999989999999998888766421 1111221111 122344445555555555
Q ss_pred HHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCH
Q 006877 401 QEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP 480 (627)
Q Consensus 401 ~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 480 (627)
|..|+.+|..+ +..+.|...+.+++++++..++.+|..+...+ ...++.|..++++.++
T Consensus 731 R~~Av~aL~~~-------------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~ 789 (897)
T PRK13800 731 RIEAVRALVSV-------------DDVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDP 789 (897)
T ss_pred HHHHHHHHhcc-------------cCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCH
Confidence 55555555443 11233444444444555555554444442211 1124555566655556
Q ss_pred HHHHHHHHHHHHhccCCCc---------------hHHHH-------HcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh
Q 006877 481 RGKKDAATAIFNLSIYQGN---------------KARAV-------RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 538 (627)
Q Consensus 481 ~~~~~a~~aL~nL~~~~~~---------------~~~l~-------~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~ 538 (627)
.++..|+.+|.++...+.. |...+ ....++.|+.+|.+++..++..|+.+|..+...+
T Consensus 790 ~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~ 869 (897)
T PRK13800 790 LVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDP 869 (897)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH
Confidence 6666666665555322110 00000 1235677888888888888888888887752111
Q ss_pred hhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 006877 539 EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 573 (627)
Q Consensus 539 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~ 573 (627)
...+.|...+...++.++..|..+|.
T Consensus 870 ---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 870 ---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 24677888888888999999998885
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.73 E-value=1.4e-06 Score=92.06 Aligned_cols=231 Identities=18% Similarity=0.197 Sum_probs=169.8
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccCCcchHHH
Q 006877 345 DALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 345 ~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..+...+++. +...+.-|+.++..+.+ .+..|..+.+.++++.|+.+|+.. +..++.+++-+++-|+.+++....+
T Consensus 146 ~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~ 224 (429)
T cd00256 146 NWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVL 224 (429)
T ss_pred HHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhh
Confidence 3455555543 36677788899999886 678899999999999999999763 6689999999999999998766666
Q ss_pred hhcCChHHHHHHHccCC-HHHHHHHHHHHHHhcCCc-------hhhHHhhhhCcHHHHHHHhcc---CCHHHHHHHH---
Q 006877 422 VNAGAIPDIVDVLKNGS-MEARENAAATLFSLSVID-------ENKVAIGAAGAIPALIRLLCD---GTPRGKKDAA--- 487 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~-~e~~~~aa~~L~~Ls~~~-------~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~--- 487 (627)
...+.|+.++++++... +.+..-+.++|.||.... .....++..|. +.++..|.. .|++...+.-
T Consensus 225 ~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~DedL~edl~~L~ 303 (429)
T cd00256 225 KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDEDLTDDLKFLT 303 (429)
T ss_pred ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 67899999999998764 678889999999997643 13334455555 445555544 2444433211
Q ss_pred ----HHHHHhccCC------------------------CchHHHHHcC--ChHHHHHhhc-cCChhhHHHHHHHHHHHhc
Q 006877 488 ----TAIFNLSIYQ------------------------GNKARAVRAG--IVPPLMRFLK-DAGGGMVDEALAILAILAS 536 (627)
Q Consensus 488 ----~aL~nL~~~~------------------------~~~~~l~~~g--~v~~Lv~lL~-~~~~~~~~~Al~~L~~L~~ 536 (627)
.-+..++..+ +|..++-+.+ ++..|+++|. +.++.+...|+.=++.++.
T Consensus 304 e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr 383 (429)
T cd00256 304 EELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVR 383 (429)
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHH
Confidence 1223333211 1333444443 4788999994 4677778888888999998
Q ss_pred -ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 537 -HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 537 -~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
+|.||..+.+-|+=..++++|.+.++++|.+|..++..|..
T Consensus 384 ~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 384 HYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 58899888888999999999999999999999999877643
No 48
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.72 E-value=5.8e-07 Score=92.04 Aligned_cols=269 Identities=16% Similarity=0.149 Sum_probs=195.3
Q ss_pred ccHhHHHHHHHHhcCCCHHH--HHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccC-
Q 006877 339 CDRAAIDALLGKLANGNVEE--QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIN- 414 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~~~~~--~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~- 414 (627)
...+.+..|++++.+.+.+. +.+|.+.|..+. ..+|+..++.-| ...++.+-+. .-++.+...+.+|.+|-++
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS 253 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS 253 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence 35578899999999888665 788888888876 467888888877 4444444433 4678888899999999887
Q ss_pred CcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 006877 415 DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 492 (627)
Q Consensus 415 ~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 492 (627)
++....+++.|+++.++-..+..++.+..+++-+|.|++... ..+..|++..+-..|..+..+.+.-.+.+|+.+++-
T Consensus 254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 566778889999999999999999999999999999998765 578889998888889988888888889999999999
Q ss_pred hccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHH
Q 006877 493 LSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 572 (627)
Q Consensus 493 L~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L 572 (627)
|+.+.+....+-+.|-+..+-.++.+-++.--.. .-.....++ ...-+..|+.+|++..-+.+..++.-+
T Consensus 334 lat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 334 LATNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 9998877777777776555555555444431100 000111111 013578899999865554554444333
Q ss_pred HHHhc-CCH-HHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 573 WAICT-GDA-EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 573 ~~L~~-~~~-~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
..=+. ... .....+-+-|+|+.|.++..+.+....+-|.++|..+.+.
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 22111 111 1234456679999999999988888889999999998754
No 49
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.71 E-value=8.1e-09 Score=71.70 Aligned_cols=36 Identities=31% Similarity=0.814 Sum_probs=23.3
Q ss_pred CCCCcccccC----ceeccCcccccHHHHHHHHHhC---CCCCC
Q 006877 252 CPISLELMKD----PVIVSTGQTYERSCIQKWLDAG---HKTCP 288 (627)
Q Consensus 252 Cpic~~~m~d----Pv~~~cg~t~~r~ci~~~~~~~---~~~CP 288 (627)
||||.+ +.+ |+.++|||+||+.|+++++..+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999964 35676
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.3e-06 Score=87.92 Aligned_cols=177 Identities=19% Similarity=0.187 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC-CchHHHHHcCChHHHHHh
Q 006877 437 GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-GNKARAVRAGIVPPLMRF 515 (627)
Q Consensus 437 ~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~~~~~l~~~g~v~~Lv~l 515 (627)
.+.+-++.|..-|..+..+-+|...+...|++.+++..+.+++..+++.|+++|...+.+. ..+..+.+.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 4677888888888888888899999999999999999999999999999999999998854 456678899999999999
Q ss_pred hccC-ChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 006877 516 LKDA-GGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDA 591 (627)
Q Consensus 516 L~~~-~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~ 591 (627)
|.+. +..+...|+.+++.|-.+ +.+...+...++...|...|++ .+.+.+..|+..+..|..........+...|.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 9864 445668999999999995 6778888888889999999998 45788999999999999988888887778888
Q ss_pred HHHHHHhhhcCChHHHHHHHHH
Q 006877 592 EEALKELSESGTDRAKRKAGSI 613 (627)
Q Consensus 592 i~~L~~l~~~~~~~~k~~A~~l 613 (627)
...+..+....+..+.+.|...
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~ 276 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTA 276 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHH
Confidence 8888899988888888777643
No 51
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.68 E-value=1.6e-08 Score=70.46 Aligned_cols=39 Identities=44% Similarity=1.113 Sum_probs=36.2
Q ss_pred CCCCcccccCce-eccCcccccHHHHHHHHH-hCCCCCCCc
Q 006877 252 CPISLELMKDPV-IVSTGQTYERSCIQKWLD-AGHKTCPKT 290 (627)
Q Consensus 252 Cpic~~~m~dPv-~~~cg~t~~r~ci~~~~~-~~~~~CP~~ 290 (627)
||||.+.+.+|+ +++|||+||+.|+.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 789999999999999999 667789986
No 52
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.67 E-value=1.9e-08 Score=97.21 Aligned_cols=48 Identities=23% Similarity=0.602 Sum_probs=40.4
Q ss_pred CCCccCCCCcccccCc--------eeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 247 PDDFRCPISLELMKDP--------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dP--------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.++..||||++.+.+| +.++|||+||+.||.+|+. .+.+||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 3567899999987653 4568999999999999997 6779999998765
No 53
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.63 E-value=2.3e-06 Score=95.46 Aligned_cols=253 Identities=21% Similarity=0.223 Sum_probs=143.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
.+..+.+.|.+.++..+..|++.|.++. +++.... .++.+.++|.++++.+|..|+.++..+....+. .+.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHH
Confidence 5566667777777777777777777776 2332222 356777777788888888888777777543211 111
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHh-cCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSL-SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 501 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~L-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 501 (627)
.. .++.+..+|.+.++.+...|+.++..+ ...+.+. -.-...+..|.+++...++-.+..++..|..++.......
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 12 467777777777777777777777777 1111111 0111233444444455566666666666666655332222
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 502 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
.- ..+++.+..++.+.++.++-.|+.++..+...+. .-..+++.|..++.+.++.++..++..|..++...+.
T Consensus 228 ~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~ 300 (526)
T PF01602_consen 228 DK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP 300 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH
T ss_pred hH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch
Confidence 10 3456666666666666666666666666665544 1123566666666666666676677776666665522
Q ss_pred HHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 582 QLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 582 ~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
... .....+..+..+.+..++.++..+|..+..
T Consensus 301 ~v~-----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 301 AVF-----NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHG-----THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hhh-----hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 111 111122222235566666666666666654
No 54
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.63 E-value=9.4e-09 Score=76.09 Aligned_cols=59 Identities=25% Similarity=0.540 Sum_probs=33.6
Q ss_pred CCccCCCCcccccCcee-ccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhh
Q 006877 248 DDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLI 309 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i 309 (627)
+-.+|++|.++|+.||. ..|.|.||+.||.+.+. ..||+|+.+....++..|..+.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 45689999999999997 48999999999987553 3499999999889999999998876
No 55
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.1e-08 Score=96.92 Aligned_cols=54 Identities=20% Similarity=0.527 Sum_probs=46.9
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCC
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 299 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 299 (627)
..+..+.|.+|++-+.+|..+||||.||.+||..|..+ ..-||.||.++++..+
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 34566999999999999999999999999999999984 4459999998877654
No 56
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.62 E-value=3.2e-08 Score=72.22 Aligned_cols=47 Identities=30% Similarity=0.657 Sum_probs=40.9
Q ss_pred CCccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
+++.|+||++...++++.+|||. ||..|+.+|+. ....||.||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999998 7788999998764
No 57
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.4e-05 Score=78.49 Aligned_cols=269 Identities=18% Similarity=0.221 Sum_probs=188.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 344 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 344 i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
...++.++.+.++.++..|+..+..++.. ..+.+.... ..++.+.+++...++ .+.|+++|.|++.++..++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45688999999999999999999998864 344444332 468889999988776 6788999999999998888888
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh------CcHHHHHHHhccC--CH-HHHHHHHHHHHHh
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA------GAIPALIRLLCDG--TP-RGKKDAATAIFNL 493 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~------g~i~~Lv~lL~~~--~~-~~~~~a~~aL~nL 493 (627)
.. .+..++..+-+.........+.+|.||+..++....+... .++..++..+... +. .-....+..+.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 76 7888888888776677788899999999988765544432 2344444443332 21 2234567788899
Q ss_pred ccCCCchHHHHHcCC--hHHHHHhhccCChhhH-HHHHHHHHHHhcChhhHHHHhhC--CChHHHH--------------
Q 006877 494 SIYQGNKARAVRAGI--VPPLMRFLKDAGGGMV-DEALAILAILASHQEGKTAIGQA--EPIPVLM-------------- 554 (627)
Q Consensus 494 ~~~~~~~~~l~~~g~--v~~Lv~lL~~~~~~~~-~~Al~~L~~L~~~~~~~~~i~~~--g~v~~Lv-------------- 554 (627)
+....+|..+..... +..|+.+-. .+..++ ...+++|.|.|........+... ..+|.++
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm 238 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM 238 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence 999999988876543 233443333 333332 34788889988866655544432 1222222
Q ss_pred -------HHHh-----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHHHHh
Q 006877 555 -------EVIR-----TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 619 (627)
Q Consensus 555 -------~lL~-----~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~l~~ 619 (627)
.+|. .+++.++..-+.+|..||... ..+..+.+-|+.+.+-++=... ++...++.-.+..++.+
T Consensus 239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 3332 235778999999999999976 5677788888888887776655 67777777777777765
No 58
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.2e-08 Score=87.87 Aligned_cols=54 Identities=24% Similarity=0.631 Sum_probs=44.9
Q ss_pred CCCccCCCCccccc--CceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCc
Q 006877 247 PDDFRCPISLELMK--DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 301 (627)
Q Consensus 247 ~~~f~Cpic~~~m~--dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 301 (627)
..-|.||||++-.. -||.+.|||.||+.||...++ ....||.|++++.+..+.+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhhee
Confidence 34599999999885 667789999999999999998 4566999999888776544
No 59
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.55 E-value=3.4e-08 Score=94.36 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=58.9
Q ss_pred CCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHh
Q 006877 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 314 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 314 (627)
+..-.+|-||.+.++-|+.++||||||.-||.+++. .+..||.|+.......+..+..++..++.+..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 334578999999999999999999999999999997 56789999998888888888888888776644
No 60
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.53 E-value=3.4e-08 Score=73.37 Aligned_cols=44 Identities=34% Similarity=0.792 Sum_probs=31.5
Q ss_pred CCccCCCCcccccCceec-cCcccccHHHHHHHHH-hCCCCCCCcc
Q 006877 248 DDFRCPISLELMKDPVIV-STGQTYERSCIQKWLD-AGHKTCPKTQ 291 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~-~~~~~CP~~~ 291 (627)
-.+.|||++..|.+||.- .|||+|++.+|.+|+. .+...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999984 8999999999999994 3456899854
No 61
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.53 E-value=6.9e-07 Score=76.90 Aligned_cols=152 Identities=16% Similarity=0.111 Sum_probs=124.2
Q ss_pred CChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHH
Q 006877 425 GAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARA 503 (627)
Q Consensus 425 g~i~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l 503 (627)
+.+..||.-... .+.++++...+-|.|.+.++.|-..+.+..++..++.-|...+...++.++..|+|+|..+.|...|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I 95 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence 456677766654 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChh-hHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 504 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE-GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 504 ~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
++++++|..+..++++....+..|+..+..|+.... .|..+....++..+.+.-.+.+.+.+.-|-..|-..|
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998543 4666665444555544444555555555555554433
No 62
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.50 E-value=7.3e-06 Score=91.47 Aligned_cols=253 Identities=19% Similarity=0.217 Sum_probs=180.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhh-ccCCcchHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL-SINDSNKGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nL-s~~~~~k~~ 420 (627)
..++.+.+.+.+.++.++..|+..+..+.+.+++. +... .++.+.++|.++|+.++..|+.++..+ ..++... .
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~ 188 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S 188 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h
Confidence 36677888888999999999999999998766552 2222 589999999999999999999999999 1111111 1
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCch
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 500 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 500 (627)
.-...+..|..++...++..+...+.+|..++........- ...++.+..++.+.++.+...++.++..+...+.
T Consensus 189 -~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-- 263 (526)
T PF01602_consen 189 -LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-- 263 (526)
T ss_dssp -HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred -hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence 12334555566667788999999999998887654322211 5678888888888888899999999998877654
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHh-cCCHHHHHHHHHHHHHHhcCC
Q 006877 501 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-TGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~A~~~L~~L~~~~ 579 (627)
.-..++++|..+|.+.++.++..++..|..++... ...+. .....+..+. +.+..+|..++.+|..++...
T Consensus 264 ---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~ 335 (526)
T PF01602_consen 264 ---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANES 335 (526)
T ss_dssp ---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH
T ss_pred ---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccccc
Confidence 44567889999999888889999999999998854 22222 2333344555 677889999999999998743
Q ss_pred HHHHHHHHHcCcHHHHHHhhh-cCChHHHHHHHHHHHHHHh
Q 006877 580 AEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 580 ~~~~~~~~~~g~i~~L~~l~~-~~~~~~k~~A~~lL~~l~~ 619 (627)
+... +++.|...+. .+++..++.+...+..+..
T Consensus 336 --n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 336 --NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp --HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred --chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 3332 4556666663 4467777777777776653
No 63
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.50 E-value=5.4e-08 Score=68.92 Aligned_cols=40 Identities=38% Similarity=0.927 Sum_probs=33.3
Q ss_pred cCCCCccccc---CceeccCcccccHHHHHHHHHhCCCCCCCcc
Q 006877 251 RCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQ 291 (627)
Q Consensus 251 ~Cpic~~~m~---dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~ 291 (627)
.||||++.+. .++.++|||.|+..||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999883 4556799999999999999986 56899996
No 64
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.46 E-value=1.5e-06 Score=74.92 Aligned_cols=153 Identities=13% Similarity=0.132 Sum_probs=131.6
Q ss_pred hhhCcHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH
Q 006877 463 GAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK 541 (627)
Q Consensus 463 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~ 541 (627)
...+.+..|+.-..+ .+.+.++....-|.|.+.++.|-..+.+.+++...+..|...+..+++.+++.|.|+|-.+.+.
T Consensus 13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 344677788877765 4788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 542 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 542 ~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
..|.+++++|.++..+.++...+-..|+..|..||..+...+..+....++..+.....+...+.+.-|...|.
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLD 166 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999998888888889999999999999888888888777777777665555555555555554
No 65
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.42 E-value=2.4e-07 Score=65.70 Aligned_cols=43 Identities=44% Similarity=1.034 Sum_probs=38.3
Q ss_pred cCCCCcccccCceecc-CcccccHHHHHHHHHhCCCCCCCcccc
Q 006877 251 RCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQT 293 (627)
Q Consensus 251 ~Cpic~~~m~dPv~~~-cg~t~~r~ci~~~~~~~~~~CP~~~~~ 293 (627)
.|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 999999999999999767889999864
No 66
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.1e-06 Score=89.11 Aligned_cols=217 Identities=16% Similarity=0.173 Sum_probs=170.2
Q ss_pred HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcch
Q 006877 341 RAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNK 418 (627)
Q Consensus 341 ~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k 418 (627)
...++.|+..|+. .+++++..|+++|.+|+.--+.....+++.++||.|+.-|.. ...++.++++.+|..++....
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 4589999999975 469999999999999998888888999999999999876644 678899999999999986532
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC--
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY-- 496 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-- 496 (627)
..|.++|++-..+..|.--+.-++..|+++..|++..-..-..-.-..++|.|-.+|.+.+.+..+.++.++..++..
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 677899999999999988888999999999999875422111111125789999999999999999999888888652
Q ss_pred -CC-chHHHHHcCChHHHHHhhccC----ChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhc
Q 006877 497 -QG-NKARAVRAGIVPPLMRFLKDA----GGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRT 559 (627)
Q Consensus 497 -~~-~~~~l~~~g~v~~Lv~lL~~~----~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~ 559 (627)
.. --..+..+|.|....++|.-. +..+....+..|..+|+. +.....+.+.++...|..+|..
T Consensus 368 h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 368 HGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 22 334677899999999998643 223345566777777775 7777777777888888887763
No 67
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=9.3e-07 Score=96.79 Aligned_cols=54 Identities=20% Similarity=0.498 Sum_probs=49.4
Q ss_pred CCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCc
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 301 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 301 (627)
+-++||.|..-++|-|++.|||.||..||++.+....+.||.|+..|...++.+
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 457899999999999999999999999999999999999999999998777655
No 68
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.33 E-value=3.7e-05 Score=78.69 Aligned_cols=231 Identities=17% Similarity=0.171 Sum_probs=169.4
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 346 ALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 346 ~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
.+...+++ .+.+...-|+++|..+.. -+++|..++.++++..|+..+.+ .+..+|.+.+.+++-|+.++...+.+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~ 238 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLK 238 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHh
Confidence 33344444 556777889999999996 67889999999999999999943 478899999999999999988777777
Q ss_pred hcCChHHHHHHHccCC-HHHHHHHHHHHHHhcCCch---hh----HHhhhhCcHHHHHHHhccC---CHHHHHHH-----
Q 006877 423 NAGAIPDIVDVLKNGS-MEARENAAATLFSLSVIDE---NK----VAIGAAGAIPALIRLLCDG---TPRGKKDA----- 486 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~-~e~~~~aa~~L~~Ls~~~~---~~----~~i~~~g~i~~Lv~lL~~~---~~~~~~~a----- 486 (627)
..+.|+.|+++++... +.+..-+++++.|+....+ .+ ..+.. +.++.-++.|... +++...+.
T Consensus 239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e 317 (442)
T KOG2759|consen 239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTE 317 (442)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 7889999999998764 6678888899999976652 22 23333 4445555555542 33332221
Q ss_pred --HHHHHHhccCCC------------------------chHHHHHc--CChHHHHHhhcc-CChhhHHHHHHHHHHHhc-
Q 006877 487 --ATAIFNLSIYQG------------------------NKARAVRA--GIVPPLMRFLKD-AGGGMVDEALAILAILAS- 536 (627)
Q Consensus 487 --~~aL~nL~~~~~------------------------~~~~l~~~--g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~- 536 (627)
-.-...|++.++ |..++-+. .++..|+++|.. .++.+...|+.=++....
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~ 397 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRH 397 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh
Confidence 112223443322 22233333 358889999976 557777888888888887
Q ss_pred ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 006877 537 HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 537 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~ 578 (627)
+|+|+..+.+.|+=..++++|.+.++++|-+|..++..|..+
T Consensus 398 yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 398 YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 699999999999999999999999999999999988776543
No 69
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.32 E-value=5.5e-07 Score=61.53 Aligned_cols=39 Identities=56% Similarity=1.207 Sum_probs=35.9
Q ss_pred CCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCc
Q 006877 252 CPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKT 290 (627)
Q Consensus 252 Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~ 290 (627)
||||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789986
No 70
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00022 Score=78.05 Aligned_cols=276 Identities=17% Similarity=0.169 Sum_probs=202.9
Q ss_pred hHHHHHHHHhcC--CCHHHHHHHHHHHHHHhhhCh------hhH------HH-----HHhcCCHHHHHHHhcCCCHHHHH
Q 006877 342 AAIDALLGKLAN--GNVEEQRAAAGELRLLAKRNA------DNR------VC-----IAEAGAIPLLVELLSSTDPRTQE 402 (627)
Q Consensus 342 ~~i~~Lv~~L~s--~~~~~~~~a~~~L~~L~~~~~------~~r------~~-----i~~~g~i~~Lv~lL~~~~~~~~~ 402 (627)
.+++.++..|.. .|++....++..+..+..+.+ ..+ .+ +...+.|..|+..+...|..+|.
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 466778888864 368888889998888876542 111 12 33458999999999999999999
Q ss_pred HHHHHHHhhccC--CcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh-CcHHHHHHHhccC
Q 006877 403 HAVTALLNLSIN--DSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDG 478 (627)
Q Consensus 403 ~A~~~L~nLs~~--~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~ 478 (627)
.|+..|.++-.. .+.+..++ .+-+|..++.+|.+..+.+|..+...|..|+.+.....+++.- +++..|..++.+.
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998554 34555555 6889999999999999999999999999999888777777775 8999999999863
Q ss_pred --C--HHHHHHHHHHHHHhccC-CCchHHHHHcCChHHHHHhhcc---CChhh----------HHHHHHHHHHHhcC---
Q 006877 479 --T--PRGKKDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKD---AGGGM----------VDEALAILAILASH--- 537 (627)
Q Consensus 479 --~--~~~~~~a~~aL~nL~~~-~~~~~~l~~~g~v~~Lv~lL~~---~~~~~----------~~~Al~~L~~L~~~--- 537 (627)
. --+..+|+..|.||..+ ..|...+.+.+.||.|.++|.. .+.++ +..++.++..|..-
T Consensus 221 Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt 300 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNT 300 (970)
T ss_pred CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2 24688999999999885 5677788888999999988854 33211 34577777777662
Q ss_pred ----hhhHHHHhhCCChHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---------cHH-HHHHhhhc
Q 006877 538 ----QEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELD---------AEE-ALKELSES 601 (627)
Q Consensus 538 ----~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g---------~i~-~L~~l~~~ 601 (627)
..++..+...+++..|..++-++ ..+++..+.-++.+..+++..+...+.+-. .+- .|+.++..
T Consensus 301 ~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne 380 (970)
T KOG0946|consen 301 SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNE 380 (970)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhc
Confidence 12345677788999998888664 356888899999999998877777665432 122 23333333
Q ss_pred C-ChHHHHHHHHHHHHH
Q 006877 602 G-TDRAKRKAGSILELL 617 (627)
Q Consensus 602 ~-~~~~k~~A~~lL~~l 617 (627)
. ....|.....+++.+
T Consensus 381 ~q~~~lRcAv~ycf~s~ 397 (970)
T KOG0946|consen 381 KQPFSLRCAVLYCFRSY 397 (970)
T ss_pred cCCchHHHHHHHHHHHH
Confidence 3 455566666676654
No 71
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=3.9e-05 Score=87.46 Aligned_cols=237 Identities=20% Similarity=0.228 Sum_probs=158.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCC-cchHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKGTI 421 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~-~~k~~i 421 (627)
..+.+-.++.|.+|..+..|+..|..++.++.+.-.... ..+++..+..|+++++.+|..|+.+++.++.+= ..-..-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 566777888999999999999999999987765443322 257888889999999999999999999999873 222233
Q ss_pred hhcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHH-HHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 422 VNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAA--GAIP-ALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~-~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
...-.++.|+..+.+. ++.++.+|+.++.|++..... ..+..- +.+. .|..++.++++.+++.++.+|+..+...
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 3455677888888765 689999999999999765432 222221 4444 3333556678999999999999998765
Q ss_pred CchHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhc--ChhhHHHHhhC--CChHHHHHH---HhcCCHHHHHHHH
Q 006877 498 GNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILAS--HQEGKTAIGQA--EPIPVLMEV---IRTGSPRNRENAA 569 (627)
Q Consensus 498 ~~~~~l~~~g~v~~Lv~lL~~~~-~~~~~~Al~~L~~L~~--~~~~~~~i~~~--g~v~~Lv~l---L~~~~~~~~~~A~ 569 (627)
+..-.=.-...+|.|..+|...+ .+.+.....++..++. ..-|++.+... ..+..+..+ ....++..+..-.
T Consensus 507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~ 586 (1075)
T KOG2171|consen 507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMI 586 (1075)
T ss_pred hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHH
Confidence 44433333567888888887754 4444443333333332 23344444421 234444444 2223455677777
Q ss_pred HHHHHHhcCCHH
Q 006877 570 AVLWAICTGDAE 581 (627)
Q Consensus 570 ~~L~~L~~~~~~ 581 (627)
....++|.--++
T Consensus 587 ~~warmc~ilg~ 598 (1075)
T KOG2171|consen 587 AFWARMCRILGD 598 (1075)
T ss_pred HHHHHHHHHhch
Confidence 777788875443
No 72
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.27 E-value=4e-05 Score=82.36 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=118.0
Q ss_pred cCCHHHHHHHHHHHHHhcCC-chhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc-CCCchHHHHHcCChHHHH
Q 006877 436 NGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLM 513 (627)
Q Consensus 436 ~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~v~~Lv 513 (627)
..+......|+-++.+++.. +..+.-+....+..+|+.++..++..+...++++|+||.. ..+-+..+++.|+|..+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34555666566555555433 2233344455889999999999999999999999999987 567788999999999999
Q ss_pred HhhccCChhhHHHHHHHHHHHhcChhhH--HHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006877 514 RFLKDAGGGMVDEALAILAILASHQEGK--TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR 587 (627)
Q Consensus 514 ~lL~~~~~~~~~~Al~~L~~L~~~~~~~--~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 587 (627)
.++.+.+......++++|.++..+.+.. .+....=.-..++.+..++++.++|.+..+|.||..+..+.+..+.
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 9999999999999999999999975542 2333323456677788889999999999999999998766555444
No 73
>PHA02926 zinc finger-like protein; Provisional
Probab=98.25 E-value=6.6e-07 Score=83.34 Aligned_cols=49 Identities=18% Similarity=0.465 Sum_probs=39.3
Q ss_pred CCCccCCCCcccccC---------ceeccCcccccHHHHHHHHHhC-----CCCCCCcccccc
Q 006877 247 PDDFRCPISLELMKD---------PVIVSTGQTYERSCIQKWLDAG-----HKTCPKTQQTLL 295 (627)
Q Consensus 247 ~~~f~Cpic~~~m~d---------Pv~~~cg~t~~r~ci~~~~~~~-----~~~CP~~~~~l~ 295 (627)
.++..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457789999997643 3556999999999999999842 356999998764
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.25 E-value=0.00043 Score=72.77 Aligned_cols=273 Identities=18% Similarity=0.185 Sum_probs=193.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccCCcchHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
..+.+...+-+.+.+++..+.+.+|.+.. +...-..+.+.+.=-.++.-|..+ +..-+++|+..+..+.....+...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 34444445555568889999999999885 566677777777666677777654 556788999988777544333222
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCch
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 500 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 500 (627)
...|.+..++.+..+.++..+..|..+|..++..+ ...+..+|++..|++.+.++..+.....+.++..+..++..|
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 35678899999999999999999999999998754 466778899999999999887778888899999999999888
Q ss_pred HHHHHcCChHHHHHhhccC-------Ch--hhHHHHHHHHHHHhcChhhHHHHhhC--CChHHHHHHHhcCCHHHHHHHH
Q 006877 501 ARAVRAGIVPPLMRFLKDA-------GG--GMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAA 569 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~-------~~--~~~~~Al~~L~~L~~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~~~~~A~ 569 (627)
..+...--+..++.-+.+. +. +....+..++..+-.+-.|--.+... .++..|+..|+.+++++|+...
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 8776543345544444332 12 23344555555555544444333322 4788888888888888888877
Q ss_pred HHHHHHhc-------------------CC-------------------------H----H----HHHHHHHcCcHHHHHH
Q 006877 570 AVLWAICT-------------------GD-------------------------A----E----QLKIARELDAEEALKE 597 (627)
Q Consensus 570 ~~L~~L~~-------------------~~-------------------------~----~----~~~~~~~~g~i~~L~~ 597 (627)
.++..+-. +. . . -...+.+.|.++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 77776543 00 0 0 1133468999999999
Q ss_pred hhhcC-ChHHHHHHHHHHHHHHh
Q 006877 598 LSESG-TDRAKRKAGSILELLQR 619 (627)
Q Consensus 598 l~~~~-~~~~k~~A~~lL~~l~~ 619 (627)
++.+. ++...+||.-+|..+-+
T Consensus 342 li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHHH
Confidence 99988 88999999999886543
No 75
>PTZ00429 beta-adaptin; Provisional
Probab=98.25 E-value=0.00031 Score=79.93 Aligned_cols=256 Identities=14% Similarity=0.116 Sum_probs=176.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
.....+..+.+.+.+.++-..-.+...++.+++... -++..|.+=+.++|+.+|-.|+.+|.++-.. .++
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~ 138 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL 138 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH
Confidence 556677788888888887777777777765554321 2357788888999999999999999887431 121
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHH
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 502 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 502 (627)
.-.++.+.+.|.+.++-+|..|+-++..+-..+. ..+...+.++.|.++|.+.++.+..+|+.+|..+........
T Consensus 139 -e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l- 214 (746)
T PTZ00429 139 -EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI- 214 (746)
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-
Confidence 2246677788888899999999999999855432 344456889999999999999999999999999986544332
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HH
Q 006877 503 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AE 581 (627)
Q Consensus 503 l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~-~~ 581 (627)
-...+.+..|+..|.+.++-.+-..+.+|... .+...... ...+..+...|++.++.+.-.|+.++.++.... ++
T Consensus 215 ~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~ 290 (746)
T PTZ00429 215 ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE 290 (746)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence 23355567777777666666666666666442 22222221 246777888888889999999999999887653 33
Q ss_pred HHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 582 QLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 582 ~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
....+. ..+..+|+.| .++.+.++-.+..-|..+.
T Consensus 291 ~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 291 LIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALL 325 (746)
T ss_pred HHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence 222211 1133556666 3556777777776665553
No 76
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=3.8e-05 Score=82.37 Aligned_cols=266 Identities=15% Similarity=0.147 Sum_probs=178.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHH-h---cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA-E---AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~-~---~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~ 417 (627)
..++.|...|.+.+...+.-|..+|..++.++.+.-..=. . .-.+|.++++.+++++.+|.+|+.++-..-.. .+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-QT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-Cc
Confidence 5889999999999988999999999999976654322211 1 13689999999999999999999988655432 22
Q ss_pred hHHHhh-cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 006877 418 KGTIVN-AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLS 494 (627)
Q Consensus 418 k~~i~~-~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 494 (627)
...+.. ..+++.+..+-...++++|++.+.+|..|-..... ++.-+ +++..++..-++.+..+...|+.....++
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 233332 34556666665667899999999999988655433 33333 77788888878888889999999999999
Q ss_pred cCCCchHHHHH--cCChHHHHHhhccCCh---------------------------------------------------
Q 006877 495 IYQGNKARAVR--AGIVPPLMRFLKDAGG--------------------------------------------------- 521 (627)
Q Consensus 495 ~~~~~~~~l~~--~g~v~~Lv~lL~~~~~--------------------------------------------------- 521 (627)
..+--+..+.. ..+||.|++-+.-.+.
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 88743333332 3567777653211110
Q ss_pred -----hhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHh----cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--C
Q 006877 522 -----GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR----TGSPRNRENAAAVLWAICTGDAEQLKIAREL--D 590 (627)
Q Consensus 522 -----~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~----~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~--g 590 (627)
.++...+++|--|+ .+.....++.++.+|+ +..-.+||.++-+|..++.+.-.. +... -
T Consensus 365 ~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~Lpe 434 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVPHLPE 434 (885)
T ss_pred ccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---cccchHH
Confidence 11111111111111 1122235556666654 455679999999999999865322 2221 2
Q ss_pred cHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 591 AEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 591 ~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
.++.|+.++.+..+-+|....|.|.....+
T Consensus 435 Lip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 688899999999999999999988877654
No 77
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.22 E-value=3e-05 Score=83.26 Aligned_cols=272 Identities=14% Similarity=0.066 Sum_probs=169.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChhh----H-HHHHhcC--CHHH--HHHHhcCCCHHHHHHHHHHHHhhcc-CCc
Q 006877 347 LLGKLANGNVEEQRAAAGELRLLAKRNADN----R-VCIAEAG--AIPL--LVELLSSTDPRTQEHAVTALLNLSI-NDS 416 (627)
Q Consensus 347 Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~----r-~~i~~~g--~i~~--Lv~lL~~~~~~~~~~A~~~L~nLs~-~~~ 416 (627)
..+.+++++...+..++.+|..+...+... + ..+.+.| .+-. .+.++..+-...-.+++...+.++. -..
T Consensus 237 v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sk 316 (678)
T KOG1293|consen 237 VTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASK 316 (678)
T ss_pred hhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHh
Confidence 444555667777788888887776544111 1 1222333 1111 1111222222222233333333332 233
Q ss_pred chHHHhhcCChHHHHHHHccC------CHHHHHHHHHHHHHhcCCc-----hhhHHhhhhCcHHHHHHHhccCCHHHHHH
Q 006877 417 NKGTIVNAGAIPDIVDVLKNG------SMEARENAAATLFSLSVID-----ENKVAIGAAGAIPALIRLLCDGTPRGKKD 485 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~------~~e~~~~aa~~L~~Ls~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 485 (627)
+.....+...++.+++++..+ .++.+.-++.=...+.... .++..+.+.-....+..+....+......
T Consensus 317 lq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aa 396 (678)
T KOG1293|consen 317 LQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAA 396 (678)
T ss_pred hhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHH
Confidence 344444566777777777543 3333333332222121111 23333333333333333333456667777
Q ss_pred HHHHHHHhccCCC-chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHH
Q 006877 486 AATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPR 563 (627)
Q Consensus 486 a~~aL~nL~~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~ 563 (627)
|+..+.+++..-. -+..+-+..+..+|++++.+++..+...++++|.|+... ..-+..++..|+|..+..++.+..+.
T Consensus 397 a~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n 476 (678)
T KOG1293|consen 397 ALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFN 476 (678)
T ss_pred HHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCch
Confidence 7777777765321 122244567899999999999999999999999999984 66788999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcC-cHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 564 NRENAAAVLWAICTGDAEQLKIARELD-AEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 564 ~~~~A~~~L~~L~~~~~~~~~~~~~~g-~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
.+..+.++|.++..+..+......... ....+..+..+++..+++.+-.+||+|.
T Consensus 477 ~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 477 SRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 999999999999999987655444433 3456778889999999999999999996
No 78
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7.6e-07 Score=92.78 Aligned_cols=69 Identities=28% Similarity=0.671 Sum_probs=58.3
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhc
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENN 316 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 316 (627)
...+++.||||.+.+.+|++++|||+||+.|+..++. +...||.|+. ... .+.+|..+.+++......+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 3457899999999999998899999999999999998 7788999996 322 6779999988887765543
No 79
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3e-07 Score=91.08 Aligned_cols=70 Identities=24% Similarity=0.436 Sum_probs=60.3
Q ss_pred CCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccC-CCCCccHHHHhhhHHHHh
Q 006877 245 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLH-TALTPNYVLKSLIALWCE 314 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~i~~~~~ 314 (627)
.+..+|.||||+++++..+++ .|+|.||+.||.+-+..|++.||.||+.+.. ..|.+......+|.+.-.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~ 110 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP 110 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence 456789999999999998877 7999999999999999999999999999864 457777778888877644
No 80
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00027 Score=80.75 Aligned_cols=257 Identities=16% Similarity=0.165 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHHHHhhhChhhHHHHHhc--CCHHHHHHHhcCC--C--------------HHHHHHHHHHHHhhccCCc
Q 006877 355 NVEEQRAAAGELRLLAKRNADNRVCIAEA--GAIPLLVELLSST--D--------------PRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 355 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~--~--------------~~~~~~A~~~L~nLs~~~~ 416 (627)
+...+..|+..|-.+++..+...+..... -.++.++.++... | ...-..|..+|-.+|.+=.
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 46677888888888876544333333222 2456666666432 1 1123456666666665432
Q ss_pred chHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 006877 417 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLS 494 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 494 (627)
++... .-.++.+-.+|.+.++.-|..++.+|..++... ...|... .+++..++.|++++++++..|+.++..++
T Consensus 342 g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 342 GKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred hhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence 22211 224566677788899999998888888775432 2223222 78888899999999999999999999999
Q ss_pred cC-CCchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHHHHhh--CCChH-HHHHHHhcCCHHHHHHHH
Q 006877 495 IY-QGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQ--AEPIP-VLMEVIRTGSPRNRENAA 569 (627)
Q Consensus 495 ~~-~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~~~~i~~--~g~v~-~Lv~lL~~~~~~~~~~A~ 569 (627)
.+ .....+-...-+++.|+..+.+ .++.++.+|+.++-|++....+-. +.. .+.+. .+..+++++++.+++.++
T Consensus 418 tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~-l~pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 418 TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI-LEPYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 85 3344445556678889999987 566889999999999887543321 111 13444 444455678899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCC-hH---HHHHHHHHHHHH
Q 006877 570 AVLWAICTGDAEQLKIARELDAEEALKELSESGT-DR---AKRKAGSILELL 617 (627)
Q Consensus 570 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~-~~---~k~~A~~lL~~l 617 (627)
.+|...+....+....-.+ -.++.|..++++.+ .. .+.|.-..+..+
T Consensus 497 taIasvA~AA~~~F~pY~d-~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 497 TAIASVADAAQEKFIPYFD-RLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred HHHHHHHHHHhhhhHhHHH-HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 9999988755432222222 37899999998876 32 334444444444
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=98.15 E-value=5.7e-05 Score=83.48 Aligned_cols=191 Identities=19% Similarity=0.143 Sum_probs=139.3
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCch----hhHHhhhhCcHHHHHHHhccC-------CHHHHHHHHHHHHHhc
Q 006877 426 AIPDIVDVLKNGSMEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDG-------TPRGKKDAATAIFNLS 494 (627)
Q Consensus 426 ~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~ 494 (627)
.++..+.+|++.+.+-+-.++..+.++...++ .+..+.++=+.+.|-++|+++ ....+..|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46778889998886666677777777765543 244577775578888999883 2455677899999999
Q ss_pred cCCCchHHHHHcCChHHHHHhhccCCh-hhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 006877 495 IYQGNKARAVRAGIVPPLMRFLKDAGG-GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 573 (627)
Q Consensus 495 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~-~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~ 573 (627)
..++....---.+-||.|++.+...+. .++..|+.+|..++.+++|+..+++.|+++.|.+.+.+ ++...+.|..+|.
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLL 164 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence 976654332223679999999988766 99999999999999999999999999999999999987 6677999999999
Q ss_pred HHhcCCHHHHHHHH---HcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 574 AICTGDAEQLKIAR---ELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 574 ~L~~~~~~~~~~~~---~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
+++...+.....-. -..+++.|-..+.......+-.+..+|..+
T Consensus 165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 99886542211100 012455555556555555555555555544
No 82
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.3e-06 Score=83.47 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=46.3
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHH-HHHhCCCCCCCccccccCCC
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQK-WLDAGHKTCPKTQQTLLHTA 298 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~-~~~~~~~~CP~~~~~l~~~~ 298 (627)
..+|.|+||++.+.+|+.++|||.||..||.. |-.+....||.||.......
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 57899999999999999999999999999999 88877778999998775543
No 83
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.12 E-value=2e-06 Score=60.77 Aligned_cols=41 Identities=24% Similarity=0.604 Sum_probs=34.9
Q ss_pred cCCCCcccc---cCceeccCcccccHHHHHHHHHhCCCCCCCccc
Q 006877 251 RCPISLELM---KDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQ 292 (627)
Q Consensus 251 ~Cpic~~~m---~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~ 292 (627)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 389999888 457788999999999999998 46678999974
No 84
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=3.2e-06 Score=84.19 Aligned_cols=51 Identities=25% Similarity=0.526 Sum_probs=40.8
Q ss_pred CCccCCCCcc-cccCce----eccCcccccHHHHHHHHHhCCCCCCCccccccCCC
Q 006877 248 DDFRCPISLE-LMKDPV----IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 298 (627)
Q Consensus 248 ~~f~Cpic~~-~m~dPv----~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 298 (627)
++..||+|+. ....|- +.+|||.||.+|+..+|..+...||.|+.++....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4578999987 233443 22799999999999999878889999999887665
No 85
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0001 Score=72.62 Aligned_cols=196 Identities=20% Similarity=0.196 Sum_probs=140.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh
Q 006877 387 PLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA 465 (627)
Q Consensus 387 ~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~ 465 (627)
--++.+|.+.++.++..|+..+.+++.. ..+.... +...++.+.+++....+ .+.|+.+|.|+|.....+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578999999999999999999999766 3333322 23467778888876655 778899999999999998888888
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHH-------cCChHHHHHhhccCCh--hhHHHHHHHHHHHhc
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR-------AGIVPPLMRFLKDAGG--GMVDEALAILAILAS 536 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~-------~g~v~~Lv~lL~~~~~--~~~~~Al~~L~~L~~ 536 (627)
.+..++.++.++.......++.+|.||+..++....+.. .|.+.....+.+.... .-..+-..++.||+.
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888899998887667778899999999998876665432 2333333334433222 234677889999999
Q ss_pred ChhhHHHHhhCCC--hHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHH
Q 006877 537 HQEGKTAIGQAEP--IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIA 586 (627)
Q Consensus 537 ~~~~~~~i~~~g~--v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 586 (627)
.+.||..+..... ...++.+-..++.--|...+.+|.|.|...+.+-..+
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL 213 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLL 213 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHh
Confidence 9999999887652 3334433332333345668899999999876544433
No 86
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.3e-06 Score=89.37 Aligned_cols=69 Identities=29% Similarity=0.561 Sum_probs=54.8
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhC----CCCCCCccccccCCCCCccHH----HHhhhHHHHhhcC
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG----HKTCPKTQQTLLHTALTPNYV----LKSLIALWCENNG 317 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~----~~~CP~~~~~l~~~~l~~n~~----l~~~i~~~~~~~~ 317 (627)
+..||||++...-|+.+.|||.||-.||.++|..+ ...||.|+..+...++.|-+. -+..+..++..||
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 78999999999999999999999999999999854 578999999888765544332 2233556677777
No 87
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.03 E-value=8e-06 Score=56.73 Aligned_cols=40 Identities=53% Similarity=0.706 Sum_probs=37.8
Q ss_pred ChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 006877 373 NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS 412 (627)
Q Consensus 373 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs 412 (627)
+++++..+++.|+||.|+++|+++++.++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999996
No 88
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00089 Score=69.03 Aligned_cols=239 Identities=17% Similarity=0.127 Sum_probs=179.5
Q ss_pred HHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC------Ccc----hHHHhhcCChHH
Q 006877 360 RAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN------DSN----KGTIVNAGAIPD 429 (627)
Q Consensus 360 ~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~------~~~----k~~i~~~g~i~~ 429 (627)
...++.+..++. .++--..+++.++|+.|+.+|.+.|.++....+..|-.|.-. .++ -..+++.++++.
T Consensus 102 hd~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 102 HDIIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 456667777774 677777899999999999999999999999999988888642 122 234556788999
Q ss_pred HHHHHccCCHH------HHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccC--CHHHHHHHHHHHHHhccCC-Cc
Q 006877 430 IVDVLKNGSME------ARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQ-GN 499 (627)
Q Consensus 430 Lv~lL~~~~~e------~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~-~~ 499 (627)
|++-+..-++. ...++.+++.|+...+ ..+..+++.|.+..|+..+... -..-+..|..+|.-+..+. ++
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 98887654332 3456777888886655 5777788889989888866543 2445667777777766644 47
Q ss_pred hHHHHHcCChHHHHHhhcc---C------ChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHH
Q 006877 500 KARAVRAGIVPPLMRFLKD---A------GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAA 570 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~~---~------~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~ 570 (627)
+...-..++|..+++-+.- . ..++.+.-..+|..+...+.++..+....++....-+++. -...+..|..
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salk 339 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALK 339 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHH
Confidence 7777788899998887632 2 3456677788888888899999999998888877767765 3456778999
Q ss_pred HHHHHhcCCH--HHHHHHHHcCcHHHHHHhhh
Q 006877 571 VLWAICTGDA--EQLKIARELDAEEALKELSE 600 (627)
Q Consensus 571 ~L~~L~~~~~--~~~~~~~~~g~i~~L~~l~~ 600 (627)
+|-....+.+ .+|..+++.++...++-++.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 9999988877 78888998888877776654
No 89
>PF05536 Neurochondrin: Neurochondrin
Probab=97.99 E-value=0.00047 Score=76.31 Aligned_cols=235 Identities=20% Similarity=0.214 Sum_probs=162.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhh---HHHHHhcCCHHHHHHHhcCC-------CHHHHHHHHHHHHh
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN---RVCIAEAGAIPLLVELLSST-------DPRTQEHAVTALLN 410 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~---r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~n 410 (627)
...+...+..|++.+.+.+.-++-.+..+.+.++.. +..+.++=+.+.|-++|+++ ....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 347888999999988778888888999998766533 44567776678999999882 35677889999999
Q ss_pred hccCCcchHHHhhcCChHHHHHHHccCCH-HHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHH
Q 006877 411 LSINDSNKGTIVNAGAIPDIVDVLKNGSM-EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA 489 (627)
Q Consensus 411 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 489 (627)
++.+++....---.+-||.|++++.+.+. ++...|..+|..++..++++..+.+.|+++.|.+.+.+ .+.....|+.+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 98876553322223569999999988876 99999999999999999999999999999999999988 55678889999
Q ss_pred HHHhccCCCchHHHHH----cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh--HHHHhhCC----ChHHHHHHHhc
Q 006877 490 IFNLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG--KTAIGQAE----PIPVLMEVIRT 559 (627)
Q Consensus 490 L~nL~~~~~~~~~l~~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~--~~~i~~~g----~v~~Lv~lL~~ 559 (627)
+.+++........--. ..+++.+-..+........-.++..|..+-...+. ........ ....+..+|++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9998775442211111 13445555555544444455667777777664421 11111222 33445555665
Q ss_pred C-CHHHHHHHHHHHHHHh
Q 006877 560 G-SPRNRENAAAVLWAIC 576 (627)
Q Consensus 560 ~-~~~~~~~A~~~L~~L~ 576 (627)
. ++..|..|..+...|.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 3 3555655555444443
No 90
>PTZ00429 beta-adaptin; Provisional
Probab=97.98 E-value=0.0022 Score=73.19 Aligned_cols=248 Identities=15% Similarity=0.133 Sum_probs=163.6
Q ss_pred ccHHHHhhhHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHH
Q 006877 301 PNYVLKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCI 380 (627)
Q Consensus 301 ~n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i 380 (627)
.|..+|+++--+....+...|.- .-..+..+.+.+.+.++.++.-|++.|..+-. +..-.
T Consensus 80 ~d~elKKLvYLYL~~ya~~~pel----------------alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e-- 139 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTARLQPEK----------------ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLE-- 139 (746)
T ss_pred CCHHHHHHHHHHHHHHcccChHH----------------HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHH--
Confidence 46678888776666554322211 12467888899999999999988887777642 22111
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhH
Q 006877 381 AEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV 460 (627)
Q Consensus 381 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~ 460 (627)
-.++.+.+.|.+.++-+|..|+.++.++...+. ..+...|.++.|.++|.+.++.+..+|+.+|..+...+....
T Consensus 140 ---~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 140 ---YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 235677888899999999999999999865332 334467888999999999999999999999999975443221
Q ss_pred HhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC--h
Q 006877 461 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH--Q 538 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~--~ 538 (627)
-...+.+..|+..+..-++-.+...+.+|.... +.+... ...++..+...|.+.++.++-.|+.++.++... +
T Consensus 215 -~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 -ESSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred -HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 122356677777777667666766677765432 222221 135677788888888888889999988888764 2
Q ss_pred hhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 539 EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 539 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
+....+.. ...+.++.++ ++++.++-.+...|..+....|
T Consensus 290 ~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 290 ELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCH
Confidence 22222111 1224445443 4556677667666666655554
No 91
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.98 E-value=0.00078 Score=71.69 Aligned_cols=186 Identities=18% Similarity=0.080 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh
Q 006877 386 IPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA 465 (627)
Q Consensus 386 i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~ 465 (627)
+..|+..|.+.++.++..++.+|..+ ...+..+.|+.+|++.++.++..++.++.... .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~ 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------H 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------c
Confidence 55566666666665666666655432 12344555556665555555555554444311 1
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHh
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG 545 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~ 545 (627)
...+.+..+|++.++.++..|+.+|..|-.. ..++.|...+.+.++.+...|+..+..+-. +.....+.
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~ 215 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCR 215 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHH
Confidence 2344555555555566666666666554421 244445555555555555555555544422 11110000
Q ss_pred ----------------------hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCC
Q 006877 546 ----------------------QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGT 603 (627)
Q Consensus 546 ----------------------~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~ 603 (627)
...+++.|..+++.. .++..++.+|..+.. ...++.|+..+....
T Consensus 216 ~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~~ 282 (410)
T TIGR02270 216 RFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA--ATRREALRAVGLVGD-----------VEAAPWCLEAMREPP 282 (410)
T ss_pred HHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh--hhHHHHHHHHHHcCC-----------cchHHHHHHHhcCcH
Confidence 012445555555432 266666666654433 236777777766443
Q ss_pred hHHHHHHHHHHHHHH
Q 006877 604 DRAKRKAGSILELLQ 618 (627)
Q Consensus 604 ~~~k~~A~~lL~~l~ 618 (627)
.++.|.+.++.+.
T Consensus 283 --~aR~A~eA~~~It 295 (410)
T TIGR02270 283 --WARLAGEAFSLIT 295 (410)
T ss_pred --HHHHHHHHHHHhh
Confidence 8888888888775
No 92
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.97 E-value=0.00028 Score=69.74 Aligned_cols=228 Identities=16% Similarity=0.136 Sum_probs=165.3
Q ss_pred HHhcCCCHHHHHHHHHHHHhhccCCcchHHHh-hcCChHHHHHHHcc--CCHHHHHHHHHHHHHhcCCchhhHHhhhh-C
Q 006877 391 ELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGAA-G 466 (627)
Q Consensus 391 ~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~--~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g 466 (627)
++++.-++-++.-|+.++.++....+.|..+- +...-..+++++++ |..+++.+.+-+++-|+........+-.. .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44444466678889999999999988877665 55567789999987 46789999999999999988777555554 7
Q ss_pred cHHHHHHHhccC-CHHHHHHHHHHHHHhccCC--CchHHHHHcCChHHHHHhhcc---CChhhHHHHHHHH---------
Q 006877 467 AIPALIRLLCDG-TPRGKKDAATAIFNLSIYQ--GNKARAVRAGIVPPLMRFLKD---AGGGMVDEALAIL--------- 531 (627)
Q Consensus 467 ~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~--~~~~~l~~~g~v~~Lv~lL~~---~~~~~~~~Al~~L--------- 531 (627)
.|.-|+.+++.. ..++.+.++.++.|++.-. +....+.-.|-+.+-++.|.. .+.+++...-.+=
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 788888888775 4677888999999998832 233345555655566666643 3444432211111
Q ss_pred --------HHH-----hcChh---------hHHHHhhC--CChHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCHHHHHHH
Q 006877 532 --------AIL-----ASHQE---------GKTAIGQA--EPIPVLMEVIRTGSPR-NRENAAAVLWAICTGDAEQLKIA 586 (627)
Q Consensus 532 --------~~L-----~~~~~---------~~~~i~~~--g~v~~Lv~lL~~~~~~-~~~~A~~~L~~L~~~~~~~~~~~ 586 (627)
..| +-+|. +...+.+. ..+..|.++++..++. .-.-|+.=+.++....|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 111 11111 23344433 4688999999987766 45568888899999999999999
Q ss_pred HHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 587 RELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 587 ~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
...|+-..+++++.+.++++|-.|..++..+-
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999988764
No 93
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.96 E-value=4.3e-06 Score=82.68 Aligned_cols=65 Identities=20% Similarity=0.445 Sum_probs=52.6
Q ss_pred CCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccCC----CCCccHHHHhhhH
Q 006877 245 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT----ALTPNYVLKSLIA 310 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~i~ 310 (627)
++.....|++|..+|.|+.++ .|-||||++||-+++.. ..+||.|+..+... .+.+...++.++.
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVy 80 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVY 80 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHH
Confidence 455678999999999999976 79999999999999996 78899998766533 3556666666654
No 94
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.93 E-value=1e-05 Score=63.91 Aligned_cols=39 Identities=33% Similarity=0.819 Sum_probs=31.3
Q ss_pred CCCCcccccCc------------e-eccCcccccHHHHHHHHHhCCCCCCCcc
Q 006877 252 CPISLELMKDP------------V-IVSTGQTYERSCIQKWLDAGHKTCPKTQ 291 (627)
Q Consensus 252 Cpic~~~m~dP------------v-~~~cg~t~~r~ci~~~~~~~~~~CP~~~ 291 (627)
|+||++.+.+| + ..+|||.|...||.+|+. .+.+||.||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 99999988433 2 348999999999999998 455999996
No 95
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.89 E-value=0.0014 Score=68.88 Aligned_cols=250 Identities=13% Similarity=0.077 Sum_probs=174.8
Q ss_pred HHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccC--CHHHH
Q 006877 365 ELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG--SMEAR 442 (627)
Q Consensus 365 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~ 442 (627)
.|-.+.+..+.-+..+.-....+.+..++-+++..++..+..++..+..+...-..+.+.+.---++.-|..+ ...-+
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3444445555555555544555666656666669999999999999988888877787777666677777665 45678
Q ss_pred HHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChh
Q 006877 443 ENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGG 522 (627)
Q Consensus 443 ~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~ 522 (627)
++|...+..+...+.+... ...|.+..++.+..+.+++.+..|+.+|+.|+..+ -..++..|++..|++.+.++...
T Consensus 86 ~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHh
Confidence 8899888777655433222 24588999999999999999999999999999853 24566899999999999876666
Q ss_pred hHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC-------CH--HHHHHHHHHHHHHhcCCHHHHHHHHHc-CcH
Q 006877 523 MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-------SP--RNRENAAAVLWAICTGDAEQLKIAREL-DAE 592 (627)
Q Consensus 523 ~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~-------~~--~~~~~A~~~L~~L~~~~~~~~~~~~~~-g~i 592 (627)
+.+..+.++..+..+|..|..+...--+..++.-.... +. .--..+..++..+-.+.+.-...-.+. .++
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l 242 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL 242 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence 88899999999999999998876543344444433221 12 122334445555444443322222222 578
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 593 EALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 593 ~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
+.|+..+..+++++++....++--+
T Consensus 243 ksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 243 KSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8999999999999888887776655
No 96
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.88 E-value=1.4e-05 Score=77.05 Aligned_cols=67 Identities=24% Similarity=0.468 Sum_probs=56.6
Q ss_pred ccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCcccc-ccCCCCCccHHHHhhhHHHHhhc
Q 006877 250 FRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQT-LLHTALTPNYVLKSLIALWCENN 316 (627)
Q Consensus 250 f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~-l~~~~l~~n~~l~~~i~~~~~~~ 316 (627)
+.||+|+.++++|+-+ +|||+||..||+.-+-...+.||.|... +-.+.++|....+..++.....+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 8999999999999987 8999999999999888788999999643 44566888888888787776643
No 97
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00046 Score=73.07 Aligned_cols=232 Identities=18% Similarity=0.179 Sum_probs=158.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHH-HhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCI-AEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..+-|..+|...+.+++..+=..|..+..+- .+.... --...++.++.-+.++++.+|..|+.-+.....-....-..
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 5667888888888887755544444443211 111111 12357899999999999999999988777665433333333
Q ss_pred hhcCChHHHHHHHccCCHH-HHHHHHH---HHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 422 VNAGAIPDIVDVLKNGSME-ARENAAA---TLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e-~~~~aa~---~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
.-.|++..++.++.+..+. +++.+.. .|..+......+..+--...+..|...+.++..+++..++..+..|-...
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC
Confidence 3577777777777665443 3333332 23333333333333333357788888998999999999999999998888
Q ss_pred CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 498 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 498 ~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
+++...-...+.+.|+.-|.+.+.+++..++.+++++|.++..... ..++..|+++......-.+..+..++..||.
T Consensus 368 p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 368 PGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred cchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 8877777788999999999999999999999999999998766522 1234444555555555677778888888886
Q ss_pred C
Q 006877 578 G 578 (627)
Q Consensus 578 ~ 578 (627)
-
T Consensus 445 l 445 (675)
T KOG0212|consen 445 L 445 (675)
T ss_pred H
Confidence 3
No 98
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.79 E-value=0.00024 Score=69.97 Aligned_cols=182 Identities=19% Similarity=0.164 Sum_probs=118.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCc---hhhHHhhhh--CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCCh
Q 006877 435 KNGSMEARENAAATLFSLSVID---ENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIV 509 (627)
Q Consensus 435 ~~~~~e~~~~aa~~L~~Ls~~~---~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v 509 (627)
.+.+++.+..|+.-|..+.... .....+... ..+..+...+.+....+...|+.++..|+..-...-.-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567889999998888876544 333333332 55667777777767788899999999998765544433345678
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHH--
Q 006877 510 PPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR-- 587 (627)
Q Consensus 510 ~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~-- 587 (627)
|.|++.+.++...+.+.|..+|..++.+...-..+ .++.+...+.+.++.+|..++..|..+....+.....+.
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 99999999888889999999999999865411111 145666677788999999999999988877662111111
Q ss_pred --HcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 588 --ELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 588 --~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
-..+++.+...+.++++.+|+.|..++..+.+.
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 134788888999999999999999999998654
No 99
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.76 E-value=1.8e-05 Score=83.69 Aligned_cols=70 Identities=23% Similarity=0.531 Sum_probs=56.4
Q ss_pred CCCCCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccCCCCCc-cHHHHhhhHHH
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP-NYVLKSLIALW 312 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~-n~~l~~~i~~~ 312 (627)
.+..+.+++.||+|..++.||+.+ .|||.||+.|+..|... +..||.|+..+......+ ....+..+..|
T Consensus 14 ~~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 14 LGRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred cCCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 334477889999999999999994 99999999999999986 889999988877665554 34555666554
No 100
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0016 Score=64.65 Aligned_cols=277 Identities=15% Similarity=0.144 Sum_probs=184.1
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHH--HHHhcCCCHHHHHHHHHHHHhhc-cCCc
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLL--VELLSSTDPRTQEHAVTALLNLS-INDS 416 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L--v~lL~~~~~~~~~~A~~~L~nLs-~~~~ 416 (627)
.++..+.++..+-..|.++...|.+.|..++. .+..-..+.+......+ ..+--..+.-.|...+..+..++ ..+.
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 56788888899988899999999999999986 55556666665544432 33333345556667777777764 4455
Q ss_pred chHHHhhcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCC--HHHHHHH----HHH
Q 006877 417 NKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT--PRGKKDA----ATA 489 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a----~~a 489 (627)
.-...-..|.++.|..-|+. .+.-++.++......|...+..+..+.+.|.|..+.+++...+ +-.+..+ .+.
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 55556678888888877765 4666788999999999999999999999999999999986532 2222223 334
Q ss_pred HHHhccCCCchHHHHHc--CChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCC--hHHHHHHHhcCC-HHH
Q 006877 490 IFNLSIYQGNKARAVRA--GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP--IPVLMEVIRTGS-PRN 564 (627)
Q Consensus 490 L~nL~~~~~~~~~l~~~--g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~--v~~Lv~lL~~~~-~~~ 564 (627)
+.+....+-.-..+++. -+|....+++...++.+++.|+.+++.+.++.+|.+.+...|. ...++.-.-+.+ ..-
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence 44444443233333332 3466677788889999999999999999999999999988764 444444333333 234
Q ss_pred HHHHHHHHHHHhcC---CHHH----------HHHHHHc-------CcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 565 RENAAAVLWAICTG---DAEQ----------LKIAREL-------DAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 565 ~~~A~~~L~~L~~~---~~~~----------~~~~~~~-------g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
++.+..+|.+++.. .|+. +..+.+. .-...+..+++.+.++.+-.|...+.-+
T Consensus 365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAi 437 (524)
T KOG4413|consen 365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAI 437 (524)
T ss_pred HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence 56666777776652 2211 1111111 2244556677777888877776655444
No 101
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.69 E-value=0.00052 Score=70.95 Aligned_cols=181 Identities=17% Similarity=0.197 Sum_probs=143.4
Q ss_pred HHHHHhcCCHHHHHHHhcCCCHHH--HHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhc
Q 006877 377 RVCIAEAGAIPLLVELLSSTDPRT--QEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLS 453 (627)
Q Consensus 377 r~~i~~~g~i~~Lv~lL~~~~~~~--~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls 453 (627)
...+...|++..|++++..++... +..|...|..+ ...+|++.++.-| +..|+.+-+ +..++.....+.+|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~-~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQI-LVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHH-HhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 446677899999999999987665 77788877665 3456788888766 555555544 345788889999999987
Q ss_pred CCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC--CchHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 006877 454 VID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ--GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAI 530 (627)
Q Consensus 454 ~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~--~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~ 530 (627)
.+. +.+..+++.|++..++-..+..++....+++.+|.|.+.+. +.+.+|++..+-.-|..+-.+.+.-+.-+|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 554 67888999999999998888889999999999999998764 467789998888888888888888888899999
Q ss_pred HHHHhcChhhHHHHhhCCChHHHHHHHhc
Q 006877 531 LAILASHQEGKTAIGQAEPIPVLMEVIRT 559 (627)
Q Consensus 531 L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~ 559 (627)
++.|+.+.+....+...|.+...-.++.+
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence 99999998887777777765544444443
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.68 E-value=0.0056 Score=64.08 Aligned_cols=187 Identities=30% Similarity=0.367 Sum_probs=138.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..+..++..+.+.++.++..|...+..+. ..-++|.|..+|.+.++.+|..|+.+|+.+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 46888899998888888888888755443 2346899999999999999999999887763
Q ss_pred hhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHH------------HHHHHH
Q 006877 422 VNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRG------------KKDAAT 488 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~------------~~~a~~ 488 (627)
....++.++..|. +.+..++..++++|..+-.. .++.+++..+.+..... +..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 3457899999999 48899999999999887432 25888888888765322 222222
Q ss_pred HHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHH
Q 006877 489 AIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 568 (627)
Q Consensus 489 aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A 568 (627)
+|..+- ....++.+..++.+.+..++..|...|..+.... ..+.+.+...+...+..++..+
T Consensus 172 ~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 222222 2346888999999888888999999998888765 2345667777777777777777
Q ss_pred HHHHHHHhc
Q 006877 569 AAVLWAICT 577 (627)
Q Consensus 569 ~~~L~~L~~ 577 (627)
+..|..+-.
T Consensus 234 ~~~l~~~~~ 242 (335)
T COG1413 234 LLALGEIGD 242 (335)
T ss_pred HHHhcccCc
Confidence 777665544
No 103
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00082 Score=72.45 Aligned_cols=264 Identities=15% Similarity=0.132 Sum_probs=173.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
.-.++.++++.++.++.++..|+.++..+.-... ...+.. -.+++.|..+-...++++|.+.+.++..|..... .
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--d 248 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP--D 248 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--H
Confidence 3489999999999999999999999887654322 223332 2567888888888899999999999988865322 2
Q ss_pred HHh--hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCCHH--------------
Q 006877 420 TIV--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPR-------------- 481 (627)
Q Consensus 420 ~i~--~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~-------------- 481 (627)
.++ -.++++-++..-+..++++.-.|+.....++..+..+..+... ..+|.|++-+...+.+
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 222 2345666666666778889999999999998888666666654 6777777533321100
Q ss_pred ------------------------------------------HHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhh---
Q 006877 482 ------------------------------------------GKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFL--- 516 (627)
Q Consensus 482 ------------------------------------------~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL--- 516 (627)
.++-.+.+|--|+ -+....+++.++.+|
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~ 401 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEH 401 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHH
Confidence 0111111111111 122334555555554
Q ss_pred -ccCChhhHHHHHHHHHHHhcChhhHHHHhhC--CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH--HHHHHHHcCc
Q 006877 517 -KDAGGGMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE--QLKIARELDA 591 (627)
Q Consensus 517 -~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~--~~~~~~~~g~ 591 (627)
.+++..+++.++-+|+.++... -+-+... ..+|.|+.+|.+..+-+|.-.+|+|...+..--. ....+. .+
T Consensus 402 L~~~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pv 477 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PV 477 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HH
Confidence 4567778888888888887532 2223322 3578889999988999999999999875542110 111111 24
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 592 EEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 592 i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+..|+.-+-+++.++++.|..+...+.+
T Consensus 478 L~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 478 LEGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 5556666778899999999999888865
No 104
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.0025 Score=71.98 Aligned_cols=230 Identities=19% Similarity=0.151 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHh-hccCCcchHHHhhcCChHHHHHHHcc-
Q 006877 359 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLN-LSINDSNKGTIVNAGAIPDIVDVLKN- 436 (627)
Q Consensus 359 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~n-Ls~~~~~k~~i~~~g~i~~Lv~lL~~- 436 (627)
+..|+..|..+..-.+=.-..-..-|+.|..+++|+++-.+++..-+.+=.. ||.|+..+..+++.++-.-++.+|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 3445555555543333333334456999999999999988887765555444 57788888888888777778888876
Q ss_pred C--CHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccC-CHHHHHHHHHHHHHhcc-CCCchHHHHHcCChHH
Q 006877 437 G--SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPP 511 (627)
Q Consensus 437 ~--~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~v~~ 511 (627)
+ ++|-+..||-+|..+..+- -.+....+.+.+..-+..|.++ .+-.+...+..|..|-. ++++|..=++.++...
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 3 4688889999998887664 3556666678888888888886 46677788888888866 5667777788999999
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcC-----hhhHHHH-----------hhCCCh----HHHHHHHhcCCHHHHHHHHHH
Q 006877 512 LMRFLKDAGGGMVDEALAILAILASH-----QEGKTAI-----------GQAEPI----PVLMEVIRTGSPRNRENAAAV 571 (627)
Q Consensus 512 Lv~lL~~~~~~~~~~Al~~L~~L~~~-----~~~~~~i-----------~~~g~v----~~Lv~lL~~~~~~~~~~A~~~ 571 (627)
|..+|.++-++++..|+.+|+.+..+ ++....+ .-+..+ ..++.++..+++-++...+.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999998874 2222111 111223 367778888999999999999
Q ss_pred HHHHhcCCHHHHHHHHH
Q 006877 572 LWAICTGDAEQLKIARE 588 (627)
Q Consensus 572 L~~L~~~~~~~~~~~~~ 588 (627)
|..+..+...+...+.-
T Consensus 727 ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 727 LSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred HHHHHHhhHHHhHHHhh
Confidence 99999887765554443
No 105
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.66 E-value=0.00048 Score=67.86 Aligned_cols=185 Identities=19% Similarity=0.150 Sum_probs=118.0
Q ss_pred hcCCCHHHHHHHHHHHHHHhhhC--hhhHHHHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCC
Q 006877 351 LANGNVEEQRAAAGELRLLAKRN--ADNRVCIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGA 426 (627)
Q Consensus 351 L~s~~~~~~~~a~~~L~~L~~~~--~~~r~~i~~~--g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~ 426 (627)
-.+.+|+.+.+|+..|+.+...+ ......+.+. ..+..+...+.+....+...|+.++..|+..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35678999999999999999877 3333333322 5667777788777788899999999999865322221123457
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCc-HHHHHHHhccCCHHHHHHHHHHHHHhccCCC-chHHHH
Q 006877 427 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGA-IPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKARAV 504 (627)
Q Consensus 427 i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~~l~ 504 (627)
++.|++.+.++..-++..|..+|..+...-... ... ++.+...+.+.++.++..++..+..+...-. ....+-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 888999998888889999999998886643311 122 5666667778899999999999988766433 122221
Q ss_pred ----HcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh
Q 006877 505 ----RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG 540 (627)
Q Consensus 505 ----~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~ 540 (627)
-..+++.+...+.+.++++++.|-.+++.+...-..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 145788899999999999999999999999775433
No 106
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3.1e-05 Score=80.79 Aligned_cols=73 Identities=25% Similarity=0.505 Sum_probs=59.0
Q ss_pred CCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCC-----CCccHHHHhhhHHHHhh
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA-----LTPNYVLKSLIALWCEN 315 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~-----l~~n~~l~~~i~~~~~~ 315 (627)
.+..+..+|.|-+|...+.+||+++|||+||..||.+..+ ....||.|+..+.... ..+|+....+|..+++.
T Consensus 77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445688999999999999999999999999999999776 5677999998887432 23467777788777663
No 107
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0029 Score=67.18 Aligned_cols=272 Identities=16% Similarity=0.125 Sum_probs=183.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHh-cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
.+.|+.|-+.+...++..+.-.+.=|..+-. ......+.- ....+.|+.+|+.++.++|..+=.+|.++-..-.++.
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 3567777777766777777766666666642 222333332 2567889999999999999887777776633212222
Q ss_pred HHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHH-HHHHHHH---HHHHhc
Q 006877 420 TIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPR-GKKDAAT---AIFNLS 494 (627)
Q Consensus 420 ~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~~---aL~nL~ 494 (627)
..+ -...++.++.-+.+..++++..|..-+..........-...-+|.+..++..+.+..+. .+..+.. .|..+.
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 222 24567888888889999999988777766655544444445567788888888776553 3332222 233344
Q ss_pred cCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 006877 495 IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 574 (627)
Q Consensus 495 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~ 574 (627)
........+--..++..|.+.+.+...+.+-.++.-+..|-....++-.......++.|+.-|.+.++.+-..+..+|.+
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 43333333222346788888898888888888888888887777777666667889999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 575 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 575 L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
+|....+. .. -..+.+|++++...+.-....+.-++|.|.
T Consensus 404 i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 404 ICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred HhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 99976432 11 124556667777777777777777777764
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.023 Score=58.98 Aligned_cols=239 Identities=18% Similarity=0.205 Sum_probs=169.9
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----hh----HHHHHhcCCHHHHHHHhcCCCH------HHHHHH
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-----DN----RVCIAEAGAIPLLVELLSSTDP------RTQEHA 404 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-----~~----r~~i~~~g~i~~Lv~lL~~~~~------~~~~~A 404 (627)
+..+++.|+.+|...+.++....+..+..|+..+. +. ...+++.++++.|++-+..=|. .-..++
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 34578999999999999999999999999885432 22 3446677899999998865333 344677
Q ss_pred HHHHHhhcc-CCcchHHHhhcCChHHHHHHHccC-C-HHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhcc---
Q 006877 405 VTALLNLSI-NDSNKGTIVNAGAIPDIVDVLKNG-S-MEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCD--- 477 (627)
Q Consensus 405 ~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~-~-~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~--- 477 (627)
+..+-|+.. .+.....+++.|.+.-|+.-+... . ..-+..|..+|.-+-.+. .++..++...++..+++-+.-
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 888888865 466777888888888877755433 2 334566777777666665 488888888888888877642
Q ss_pred -C-----CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH---HHhhCC
Q 006877 478 -G-----TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT---AIGQAE 548 (627)
Q Consensus 478 -~-----~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~---~i~~~g 548 (627)
+ ..+..++-...|+.+...+.|+.+++...+++...-++.. .....-.++++|-....++++.. .+++.+
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 1 2355667777888888899999999998888876666654 34456679999999988877544 455666
Q ss_pred ChHHHHHHH-hcC--------C-HHHHHHHHHHHHHHhcCC
Q 006877 549 PIPVLMEVI-RTG--------S-PRNRENAAAVLWAICTGD 579 (627)
Q Consensus 549 ~v~~Lv~lL-~~~--------~-~~~~~~A~~~L~~L~~~~ 579 (627)
++..++.+. +.+ + ...-++.+.+|+.+-.+.
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 666666543 222 2 345677888888766543
No 109
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.62 E-value=5.4e-05 Score=78.58 Aligned_cols=84 Identities=14% Similarity=0.279 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhcccCCCCccccccccccCCCCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHh----C
Q 006877 208 FEEISSLLRKLKDFVLIENPEVDITEGEKGLMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA----G 283 (627)
Q Consensus 208 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~----~ 283 (627)
-..|+.|+.++++++.+.+.... ....-.+.+-.++-.|.+|.+.-.||+...|-|+|||-||.+|... .
T Consensus 501 YAnIF~LitRmRQ~aDHP~LVl~------S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~ 574 (791)
T KOG1002|consen 501 YANIFTLITRMRQAADHPDLVLY------SANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENN 574 (791)
T ss_pred HHHHHHHHHHHHHhccCcceeee------hhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhccc
Confidence 36788899999887776544321 1122223334466789999999999999999999999999988873 3
Q ss_pred CCCCCCccccccCC
Q 006877 284 HKTCPKTQQTLLHT 297 (627)
Q Consensus 284 ~~~CP~~~~~l~~~ 297 (627)
+.+||.|...++.+
T Consensus 575 nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 575 NVTCPVCHIGLSID 588 (791)
T ss_pred CCCCcccccccccc
Confidence 57999999888654
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.62 E-value=0.0057 Score=66.31 Aligned_cols=256 Identities=16% Similarity=0.182 Sum_probs=166.5
Q ss_pred HHHHHHHhhhChhhHHHHHhcCCHHHHHHHh----------cCCCHHHHHHHHHHHHhhccC-CcchHHHhhcCChHHHH
Q 006877 363 AGELRLLAKRNADNRVCIAEAGAIPLLVELL----------SSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIV 431 (627)
Q Consensus 363 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL----------~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv 431 (627)
+..|+.+++ ++.+...+....++..|.++- ...+..+...|+.+|+|+-.. +..|..+.+.|..+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 456666664 444555555555566666654 335788999999999999775 56677778999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHHHhcCCc-hhhHHhhhh-CcHHHHHHHhcc----------C-------CHHHHHHHH
Q 006877 432 DVLKNG-----SMEARENAAATLFSLSVID-ENKVAIGAA-GAIPALIRLLCD----------G-------TPRGKKDAA 487 (627)
Q Consensus 432 ~lL~~~-----~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~-g~i~~Lv~lL~~----------~-------~~~~~~~a~ 487 (627)
+.|+.. +.+..-...++||-++... +.+..+.+. +++..++..|.. . +......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999887 6888888999999887554 566666665 777777765542 0 234466789
Q ss_pred HHHHHhccCCCchHHHHHcCChHHHHHhhcc---------CChhhHHHHHHHHHHHhcC-hhh-------HHHH----hh
Q 006877 488 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKD---------AGGGMVDEALAILAILASH-QEG-------KTAI----GQ 546 (627)
Q Consensus 488 ~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~---------~~~~~~~~Al~~L~~L~~~-~~~-------~~~i----~~ 546 (627)
++++|+..+......-...+.++.|+.+|.. +-......++.+|.|+--. .+. ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998765443331223344444444321 1223455666777666211 000 0011 11
Q ss_pred CCChHHHHHHHhc----CC----HHHHHHHHHHHHHHhcCCHHHHHHHHH----------------cCcHHHHHHhhhcC
Q 006877 547 AEPIPVLMEVIRT----GS----PRNRENAAAVLWAICTGDAEQLKIARE----------------LDAEEALKELSESG 602 (627)
Q Consensus 547 ~g~v~~Lv~lL~~----~~----~~~~~~A~~~L~~L~~~~~~~~~~~~~----------------~g~i~~L~~l~~~~ 602 (627)
...+..|+.+|+. .. ...-.--+.+|..++..+...+..+.. ..+-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2357778888763 11 123344567777788776555544432 24577899999999
Q ss_pred ChHHHHHHHHHHHHHHh
Q 006877 603 TDRAKRKAGSILELLQR 619 (627)
Q Consensus 603 ~~~~k~~A~~lL~~l~~ 619 (627)
.+.+|..++.+|..|++
T Consensus 321 ~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCK 337 (446)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 99999999999999875
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.61 E-value=0.00011 Score=51.05 Aligned_cols=41 Identities=32% Similarity=0.433 Sum_probs=38.1
Q ss_pred ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 537 HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 537 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
+++++..+++.|+++.|+.+|.++++.+++.|+++|.|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999974
No 112
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.01 Score=59.20 Aligned_cols=236 Identities=13% Similarity=0.123 Sum_probs=159.0
Q ss_pred CCHHHHHHHHHHHHHHhhhChhhH----HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHH
Q 006877 354 GNVEEQRAAAGELRLLAKRNADNR----VCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPD 429 (627)
Q Consensus 354 ~~~~~~~~a~~~L~~L~~~~~~~r----~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~ 429 (627)
.+..++.-++..+..+..+++.|. ..++.+|..+.++.++...|.++...|...+..++..+..-..|.+...++.
T Consensus 94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDd 173 (524)
T KOG4413|consen 94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDD 173 (524)
T ss_pred CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCCh
Confidence 344455556666666655554332 2355789999999999999999999999999999988877777777666555
Q ss_pred HHH--HHccCCHHHHHHHHHHHHHhcCC-chhhHHhhhhCcHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCchHHHHH
Q 006877 430 IVD--VLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVR 505 (627)
Q Consensus 430 Lv~--lL~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~ 505 (627)
+-. +-...+.-++......+..+++. +......-.+|.+..|..=++. .+.-++.+++.....|.....++..+.+
T Consensus 174 lhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ 253 (524)
T KOG4413|consen 174 LHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ 253 (524)
T ss_pred HHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch
Confidence 432 22223344555566666555443 3444455556888777766655 4666788889999999999999999999
Q ss_pred cCChHHHHHhhcc--CChhhHHHHHHHHHHHhcC----hhhHHHHhhC--CChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 506 AGIVPPLMRFLKD--AGGGMVDEALAILAILASH----QEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 506 ~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~L~~~----~~~~~~i~~~--g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
.|.|+.+..++.. .++--.-.++.....+-.. .-.-+++.+. -++...++++...++...+.|+.++..+.+
T Consensus 254 eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 254 EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS 333 (524)
T ss_pred hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC
Confidence 9999999999965 3333333344444433332 1112222221 256667788888899999999999999998
Q ss_pred CCHHHHHHHHHcC
Q 006877 578 GDAEQLKIARELD 590 (627)
Q Consensus 578 ~~~~~~~~~~~~g 590 (627)
+. +..+.+...|
T Consensus 334 nt-eGadlllkTg 345 (524)
T KOG4413|consen 334 NT-EGADLLLKTG 345 (524)
T ss_pred Cc-chhHHHhccC
Confidence 76 4455555544
No 113
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.00096 Score=70.29 Aligned_cols=259 Identities=14% Similarity=0.110 Sum_probs=176.9
Q ss_pred HHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHHHhhcCChHHHHHHHccCC
Q 006877 360 RAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGS 438 (627)
Q Consensus 360 ~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~ 438 (627)
..++..|..+++.-..-|.-+.++.++++|+++|+.++..+.--+...++|+... +..+..+...|+|+.|+.++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 3445566667665556678888899999999999998877777788888888554 666888889999999999999888
Q ss_pred HHHHHHHHHHHHHhcCCchhh--HHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC-c---hHHHHH---cC-C
Q 006877 439 MEARENAAATLFSLSVIDENK--VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-N---KARAVR---AG-I 508 (627)
Q Consensus 439 ~e~~~~aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~---~~~l~~---~g-~ 508 (627)
...+.+..|+|..+-.+.+.- -+..+.-++..++++.+++.-.++..++..|.|+..+.. | +..+++ .. .
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 899999999999998776543 345555677889999988888999999999999987322 2 111111 11 3
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHh-h-CCChHHHHHHHhc---------C-----------------
Q 006877 509 VPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG-Q-AEPIPVLMEVIRT---------G----------------- 560 (627)
Q Consensus 509 v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~-~-~g~v~~Lv~lL~~---------~----------------- 560 (627)
...|++.+...++-.....+.+|.+++...+....++ + ...+..+.++|.. |
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 4556666666666666666777777766554433222 1 1233333333210 0
Q ss_pred ---------------------------CHHHHHHHHHHHHHHhc---------CCHHHHHHHHHcCcHHHHHHhhhcCCh
Q 006877 561 ---------------------------SPRNRENAAAVLWAICT---------GDAEQLKIARELDAEEALKELSESGTD 604 (627)
Q Consensus 561 ---------------------------~~~~~~~A~~~L~~L~~---------~~~~~~~~~~~~g~i~~L~~l~~~~~~ 604 (627)
++++-....|+..++.- ...+.++.+...|.-..|..+..+.++
T Consensus 647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl 726 (743)
T COG5369 647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL 726 (743)
T ss_pred cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence 01111222233333221 111456667778888888888888899
Q ss_pred HHHHHHHHHHHHHH
Q 006877 605 RAKRKAGSILELLQ 618 (627)
Q Consensus 605 ~~k~~A~~lL~~l~ 618 (627)
.+++++..+|.+|+
T Consensus 727 ~vrek~~taL~~l~ 740 (743)
T COG5369 727 IVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999875
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.52 E-value=0.02 Score=62.09 Aligned_cols=231 Identities=17% Similarity=0.235 Sum_probs=154.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHhhcc-CCcchHHHh-hcC
Q 006877 353 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-----DPRTQEHAVTALLNLSI-NDSNKGTIV-NAG 425 (627)
Q Consensus 353 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~nLs~-~~~~k~~i~-~~g 425 (627)
+.++++..+|+++|.|....++..|..+.+.|+.+.++..|+.. +.++.--...+|.-++. ....+..++ +.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45688999999999999999999999999999999999999886 67777777887776654 456666666 567
Q ss_pred ChHHHHHHHcc-----------------CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc---------CC
Q 006877 426 AIPDIVDVLKN-----------------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD---------GT 479 (627)
Q Consensus 426 ~i~~Lv~lL~~-----------------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---------~~ 479 (627)
++..|+..|.. ...+....++.++||+.........-...+.++.++.++.. +.
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 88888887742 13445678889999997654332221122444444444331 12
Q ss_pred HHHHHHHHHHHHHhccCCC-c-------hHHH----HHcCChHHHHHhhcc-----CC---hhhHHHHHHHHHHHhcC-h
Q 006877 480 PRGKKDAATAIFNLSIYQG-N-------KARA----VRAGIVPPLMRFLKD-----AG---GGMVDEALAILAILASH-Q 538 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~-~-------~~~l----~~~g~v~~Lv~lL~~-----~~---~~~~~~Al~~L~~L~~~-~ 538 (627)
.....+++.+|.|+-.... . ...+ .....+..|+.+|.. .. .+...-.+.+|..++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 4557778888888832110 0 0001 112346777777753 11 13445567777777775 3
Q ss_pred hhHHHHhh----------------CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH
Q 006877 539 EGKTAIGQ----------------AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL 583 (627)
Q Consensus 539 ~~~~~i~~----------------~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~ 583 (627)
..|..+.. ...-..|++++.+..+.+|..+...|+.||..+....
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~ 343 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRF 343 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHH
Confidence 33443321 1346889999988779999999999999998776433
No 115
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.50 E-value=0.00043 Score=56.85 Aligned_cols=86 Identities=38% Similarity=0.544 Sum_probs=70.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhh
Q 006877 386 IPLLVELL-SSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA 464 (627)
Q Consensus 386 i~~Lv~lL-~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~ 464 (627)
||.|++.| +++++.+|..|+.+|+.+- ...+++.|+++++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 68899999 8889999999999998552 234589999999999999999999999876 23
Q ss_pred hCcHHHHHHHhccCC-HHHHHHHHHHHH
Q 006877 465 AGAIPALIRLLCDGT-PRGKKDAATAIF 491 (627)
Q Consensus 465 ~g~i~~Lv~lL~~~~-~~~~~~a~~aL~ 491 (627)
..+++.|.+++.+++ ..++..|+.+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 458999999998864 455788888774
No 116
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.48 E-value=0.0093 Score=63.59 Aligned_cols=153 Identities=25% Similarity=0.211 Sum_probs=117.4
Q ss_pred CCHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHh
Q 006877 384 GAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 462 (627)
Q Consensus 384 g~i~~Lv~lL~-~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 462 (627)
.+++.|+..|. .++..+...++.++.. .++ ..++..+++.|.+.++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 46788999995 5567776655554432 211 12389999999999999999999998754
Q ss_pred hhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH
Q 006877 463 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 542 (627)
Q Consensus 463 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~ 542 (627)
......+.|+.+|.+.++.++..++.++.... ....+.|..+|.+.++.+...|+.+|+.+..
T Consensus 114 ~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~------ 176 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPR------ 176 (410)
T ss_pred CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc------
Confidence 33457899999999999999988887776621 2346789999999999999999999988764
Q ss_pred HHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 543 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 543 ~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
..+++.|...+.+.++.+|..|+..|..+..
T Consensus 177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred ----ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 2467778888888999999999988876643
No 117
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00014 Score=82.32 Aligned_cols=73 Identities=32% Similarity=0.496 Sum_probs=66.8
Q ss_pred CCCCCCCccCCCCcccccCceecc-CcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhc
Q 006877 243 SPVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENN 316 (627)
Q Consensus 243 ~~~~~~~f~Cpic~~~m~dPv~~~-cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 316 (627)
-.++|++|.-|+...+|+|||++| +|+|.||+-|.+++- ...+-|.||.++..+.++||..++.-|..|..++
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL-s~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL-SDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHh-cCCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999997 999999999999998 5567899999999999999999999999997754
No 118
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.40 E-value=0.00015 Score=57.75 Aligned_cols=46 Identities=26% Similarity=0.520 Sum_probs=35.1
Q ss_pred ccCCCCcccccC-ceec-cCcccccHHHHHHHHHh--CCCCCCCcccccc
Q 006877 250 FRCPISLELMKD-PVIV-STGQTYERSCIQKWLDA--GHKTCPKTQQTLL 295 (627)
Q Consensus 250 f~Cpic~~~m~d-Pv~~-~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~ 295 (627)
-.||.|...-.| |++. .|+|.|...||.+|+.. .+.+||+||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 456666655544 5544 89999999999999995 3579999998753
No 119
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=7e-05 Score=73.05 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=44.5
Q ss_pred cCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCC
Q 006877 251 RCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 298 (627)
Q Consensus 251 ~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 298 (627)
.|+||...+.-||.++|+|.||.-||......+..+||+||.+++++-
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 599999999999999999999999999988888889999999998764
No 120
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.025 Score=61.34 Aligned_cols=266 Identities=17% Similarity=0.171 Sum_probs=173.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHH-HHHHHHhhccCCcchHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEH-AVTALLNLSINDSNKGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~-A~~~L~nLs~~~~~k~~ 420 (627)
...+.+.+.+.+.+...+..+.+.+..+.++. .-..+.+.+++..|.+.+...+....+. +.-+.-....+-. .
T Consensus 134 ~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~ 208 (569)
T KOG1242|consen 134 YVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---P 208 (569)
T ss_pred HHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---C
Confidence 46677788888888889999999999998643 3556777889999999998865544443 2222222111100 2
Q ss_pred HhhcCChHHHHHHHc---cCCHHHHHHHHHHHHHh-cCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 006877 421 IVNAGAIPDIVDVLK---NGSMEARENAAATLFSL-SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~---~~~~e~~~~aa~~L~~L-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 496 (627)
..+++.++.+-.+|. +....++..|..+...+ +..+.+..+ -.+|.++.-+....=+.+..++..|..|+.+
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 224555555555554 34566666555444332 111111111 2344444444333446788899999999998
Q ss_pred CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh-----------------------------HHHHh--
Q 006877 497 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-----------------------------KTAIG-- 545 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~-----------------------------~~~i~-- 545 (627)
.+..-......+||.+.+.|.+..+++++.+..++..+++..++ +..++
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~ 364 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAE 364 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeee
Confidence 88888888899999999999999999999999999888763221 11111
Q ss_pred -hCCChHHHHHHHhcC----CHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 546 -QAEPIPVLMEVIRTG----SPRNRENAAAVLWAICTGD--AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 546 -~~g~v~~Lv~lL~~~----~~~~~~~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
+.-.+..++.+|+.+ +...+..++.+..|+|.-- +.....+.. .++|-|...+....|++|..|.++|.-+
T Consensus 365 V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 365 VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 123456667777643 4567889999999999854 433333332 3677777777777899999999999544
No 121
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.32 E-value=0.00054 Score=47.17 Aligned_cols=40 Identities=40% Similarity=0.557 Sum_probs=36.5
Q ss_pred hhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 006877 374 ADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 374 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~ 413 (627)
++++..+.+.|+++.|+++|.+++++++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889999999999999999999999999999999973
No 122
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00022 Score=68.77 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=42.0
Q ss_pred CCCCccCCCCcccccCceec-cCcccccHHHHHHHHHh-CCCCCCCcccccc
Q 006877 246 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDA-GHKTCPKTQQTLL 295 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l~ 295 (627)
-..+-.||+|++....|.+. +|||.||-.||..-+.. ..++||.|+....
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34677899999999999987 69999999999988763 3589999997653
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.27 E-value=0.00082 Score=55.14 Aligned_cols=86 Identities=35% Similarity=0.452 Sum_probs=69.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 344 IDALLGKL-ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 344 i~~Lv~~L-~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
|+.|++.| ++.++.++..+++.|..+-. ..++|.|+.+++++++.+|..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889999 78889999999998884431 145899999999999999999999998873
Q ss_pred hcCChHHHHHHHccCC-HHHHHHHHHHHH
Q 006877 423 NAGAIPDIVDVLKNGS-MEARENAAATLF 450 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~-~e~~~~aa~~L~ 450 (627)
...+++.|.+++.+++ ..++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3458999999998764 556888888764
No 124
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0048 Score=65.21 Aligned_cols=196 Identities=13% Similarity=0.097 Sum_probs=144.0
Q ss_pred HHHHHHhhccC-CcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhhHHhhhhCcHHHHHHHhccCCHH
Q 006877 404 AVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGTPR 481 (627)
Q Consensus 404 A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 481 (627)
++..|..++.. .-.|.-+....+.++|+++|+.+...+.--+...+.|+.. ....+..+.+.|.|..|++++.+.+..
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34444455443 3446777788899999999998766666666667777643 345688889999999999999998889
Q ss_pred HHHHHHHHHHHhccCCCc--hHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC----hhhHHHHhhCC----ChH
Q 006877 482 GKKDAATAIFNLSIYQGN--KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH----QEGKTAIGQAE----PIP 551 (627)
Q Consensus 482 ~~~~a~~aL~nL~~~~~~--~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~----~~~~~~i~~~g----~v~ 551 (627)
.+.+..|.+.++-.+..+ +-+++..-++..++.+..++...+++.++.+|.|+..+ ++.+....+.. ...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 999999999999886543 33677788899999999999999999999999999773 22333333322 345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHhh
Q 006877 552 VLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE-LDAEEALKELS 599 (627)
Q Consensus 552 ~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~l~ 599 (627)
.|++.+...+|-..+..+.+|.+++..++.....+.+ ...+..+.+++
T Consensus 569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 6777777888887777799999988877655544433 34555555544
No 125
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.033 Score=61.50 Aligned_cols=270 Identities=14% Similarity=0.107 Sum_probs=172.6
Q ss_pred hHHHHHHHHhcCCCHH-HHHHHHHHHHHHhhhChhhHHHHHhc-CCHHHHHHHhcC--CCHHHHHHHHHHHHhhcc----
Q 006877 342 AAIDALLGKLANGNVE-EQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSS--TDPRTQEHAVTALLNLSI---- 413 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~-~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~--~~~~~~~~A~~~L~nLs~---- 413 (627)
+.+..|+.......+. .+..++..|..++.+-+. ....-.. .++-.++.-.+. ++..+|-.|+.+|.|--.
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~p-evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP-EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH-HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 4555666666554444 778899999999964322 2222222 345555555544 477899999999987432
Q ss_pred ---CCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHH
Q 006877 414 ---NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATA 489 (627)
Q Consensus 414 ---~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a 489 (627)
++..|.. ++...++.-.+++.+++..|..+|..+.... ++-..-.....+..-+..+++.++++...++..
T Consensus 208 nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 208 NFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred hhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1222222 3445566667788999999999988774332 222222223455666677788899999999998
Q ss_pred HHHhccCCCc----------------hHHHH---HcCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHH
Q 006877 490 IFNLSIYQGN----------------KARAV---RAGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTA 543 (627)
Q Consensus 490 L~nL~~~~~~----------------~~~l~---~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~L~~~~~~~~~ 543 (627)
..++|.-.-. ...+. -.+++|.|+++|.. .+......|-.+|..++.... ..
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~--D~ 360 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG--DD 360 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc--cc
Confidence 8888842111 11111 13678889999854 122334555555555544221 11
Q ss_pred HhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 544 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 544 i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
|+. -++|.+-+-+++++.+-++.|+.+...+-.+....+..-+..++++.++.++.+..--++..+.|.|..+.++
T Consensus 361 Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 361 IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 221 2344444455567888999999999998887766665556668999999999988888999999999887654
No 126
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.049 Score=61.96 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHh----cCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHH
Q 006877 358 EQRAAAGELRLLAKRNADNRVCIAE----AGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVD 432 (627)
Q Consensus 358 ~~~~a~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~ 432 (627)
-..-++.+|+++.+.+++-...+.. -|-.+.++.+|.. +++.++..|+.++..+..+.+.-..|+..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 4556888899988877755444432 3677888888866 5889999999999888878888888999999999999
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccC-CHHHHHHHHHHHHHhc
Q 006877 433 VLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-TPRGKKDAATAIFNLS 494 (627)
Q Consensus 433 lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~ 494 (627)
+|.+ -+..++.++.+|+.|+++........+.|++..+..++... +++.+..++..+..|.
T Consensus 1821 lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 9866 35678888999999998887777777778877777777654 4666666677776665
No 127
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00018 Score=73.11 Aligned_cols=47 Identities=26% Similarity=0.603 Sum_probs=39.5
Q ss_pred ccCCCCccccc--Cce-eccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 250 FRCPISLELMK--DPV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 250 f~Cpic~~~m~--dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
+.|.||+|-+. |-+ ++||+|.|...||..|+......||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 69999999886 444 579999999999999999766779999986643
No 128
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.18 E-value=0.023 Score=59.37 Aligned_cols=192 Identities=26% Similarity=0.316 Sum_probs=133.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhh
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 463 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~ 463 (627)
..++.+++++.+.+..++..|...+..+. ...+++.+..++.+.++.++..|+.+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 46889999999999999999998865542 34578999999999999999999997766532
Q ss_pred hhCcHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHH-HHh--c--C
Q 006877 464 AAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILA-ILA--S--H 537 (627)
Q Consensus 464 ~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~-~L~--~--~ 537 (627)
...++.|+.++.+ ++..++..++.+|..+-.. ..+.+++..+.+..... +...+. .+. . .
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~---a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGS---AAAALDAALLDVRAAA 169 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhh---hhhhccchHHHHHHHH
Confidence 3478999999994 7889999999999988653 24778888887654322 111110 000 0 0
Q ss_pred hhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 538 QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 538 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
......+.....++.+.+.+......++..|..+|..+...+ ..+.+.+...+.++...++.++...|..+
T Consensus 170 ~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 170 AEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 011111223457899999999888999999999999988875 22344455555555555555555555443
No 129
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.17 E-value=0.0053 Score=55.47 Aligned_cols=106 Identities=17% Similarity=0.299 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCchhhhhhhHHHHHHHHhhhhhhHHhhhhcCCCCChHHHHhHHHHHHHHHHHHHHHHhcCC
Q 006877 7 GAEVLSRLVASVKEVSGLPECKNFFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKSTND 86 (627)
Q Consensus 7 ~~~l~~~l~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~ 86 (627)
+.+|+..++..+... ...|..+..+..-++.|.|+++||...+..++.+-..-++.|...|++++.|++.|++
T Consensus 15 ~~eLlk~v~~~~~k~-------~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk 87 (147)
T PF05659_consen 15 FGELLKAVIDASKKS-------LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSK 87 (147)
T ss_pred HHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 444554444444433 3446677889999999999999998876666666588899999999999999999998
Q ss_pred CchhHHHHhhHHHHHHHHHHHHHHHHHhcc-CCCC
Q 006877 87 GSKLYQCLQRDKIAAQFHQLTEQIEAALSD-IPYD 120 (627)
Q Consensus 87 ~Skl~ll~~~~~~~~~~~~~~~~l~~~L~~-~p~~ 120 (627)
.++ |=+.....+..+++++-.+|.+.++. +|+.
T Consensus 88 ~~r-~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~ 121 (147)
T PF05659_consen 88 VRR-WNLYKKPRYARKIEELEESLRRFIQVDLQLH 121 (147)
T ss_pred ccH-HHHHhhHhHHHHHHHHHHHHHHHhcchhHHH
Confidence 874 44557777889999999999887774 5644
No 130
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.17 E-value=0.00013 Score=66.36 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=39.7
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.|.|-||.+-++.||++.|||.||..|.-+-+. ....|-.|+....
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhhc
Confidence 389999999999999999999999999887776 4467999987654
No 131
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00017 Score=80.12 Aligned_cols=47 Identities=30% Similarity=0.739 Sum_probs=41.4
Q ss_pred CCccCCCCcccccC-----ceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKD-----PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~d-----Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.+-.|+||.+.|.. |-.++|||.|+..|+.+|+++ ..+||.||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence 46789999999988 778999999999999999995 778999998443
No 132
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0011 Score=70.94 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHhhcccCCCCccccccccccCCCCCCCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCC
Q 006877 207 CFEEISSLLRKLKDFVLIENPEVDITEGEKGLMKHRSPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHK 285 (627)
Q Consensus 207 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~ 285 (627)
.++++.++..|+.+.-..+. .++...+++|++|.-|+...+|+|||.+ .+|-+.+|+-|..++- ...
T Consensus 823 ~IE~l~~f~nr~E~~r~~ea-----------~EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahll-sd~ 890 (929)
T COG5113 823 QIEELRSFINRLEKVRVIEA-----------VEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLL-SDG 890 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------hhhhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHh-cCC
Confidence 45666666666654432211 1223356899999999999999999997 5889999999999987 557
Q ss_pred CCCCccccccCCCCCccHHHHhhhHHHHhhcC
Q 006877 286 TCPKTQQTLLHTALTPNYVLKSLIALWCENNG 317 (627)
Q Consensus 286 ~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 317 (627)
+.|..|.|+...+++||..+|.-|..+....+
T Consensus 891 tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 891 TDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred CCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 89999999999999999999999988866444
No 133
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.039 Score=60.59 Aligned_cols=254 Identities=18% Similarity=0.176 Sum_probs=157.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhccCC-cchH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSIND-SNKG 419 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~-~~k~ 419 (627)
...+.|++.|..+|+.+|-.|+..|..|++.++.+.-.+ -|.+.++|... |--+....+...++|+--+ ...
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg- 254 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG- 254 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-
Confidence 367888899988889999999999999998888765444 37888888553 4444455567777776542 221
Q ss_pred HHhhcCChHHHHHHHccCC-HHHHHHHHHHHHH--hcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 006877 420 TIVNAGAIPDIVDVLKNGS-MEARENAAATLFS--LSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~-~e~~~~aa~~L~~--Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 496 (627)
...+++|.+++.+.. ..+...+..++.. ++....+...-+. -++..|-.++.+.++..+..++.++..+...
T Consensus 255 ----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-LCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 255 ----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred ----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 235788999888764 4455555555532 2222111111111 2455666677788899999999999988864
Q ss_pred CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 006877 497 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAI 575 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~A~~~L~~L 575 (627)
+. ..+.+ --..+++.|.+.++.++-.|+..|.-+.... +..+ .+..|+..+...+ ...|..-+.-+..+
T Consensus 330 Hp---~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~i 399 (877)
T KOG1059|consen 330 HP---KAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKAEGTNYRDELLTRIISI 399 (877)
T ss_pred CH---HHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 32 22221 1345788899999999999999998877643 2222 3455555554332 35566666666677
Q ss_pred hcCCHHHHHHHHH-cCcHHHHHHhhhc-CChHHHHHHHHHHHHHH
Q 006877 576 CTGDAEQLKIARE-LDAEEALKELSES-GTDRAKRKAGSILELLQ 618 (627)
Q Consensus 576 ~~~~~~~~~~~~~-~g~i~~L~~l~~~-~~~~~k~~A~~lL~~l~ 618 (627)
|+.+.. ..+.+ +-.+..|++|.+- |+.++...|..++...-
T Consensus 400 CS~snY--~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~i 442 (877)
T KOG1059|consen 400 CSQSNY--QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAI 442 (877)
T ss_pred hhhhhh--hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHhe
Confidence 776531 11222 1245566666543 36666666666665543
No 134
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.09 E-value=0.31 Score=47.12 Aligned_cols=232 Identities=12% Similarity=0.107 Sum_probs=149.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHh-cCCHHHHHHHh------------cCCCHHHHHHHHHHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELL------------SSTDPRTQEHAVTALL 409 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL------------~~~~~~~~~~A~~~L~ 409 (627)
.+..++-.+.++ +.++.|+.+|..--+..++-...+-. -|....|.+=. ......-..+|+..|-
T Consensus 27 k~~~~i~~l~~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ 104 (293)
T KOG3036|consen 27 KAYQLILSLVSP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ 104 (293)
T ss_pred chhhHHHHhhCC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH
Confidence 356666666554 44566666665544322222222222 24433333321 1123344567888888
Q ss_pred hhccCCcchHHHhhcCChHHHHHHHccC-----CHHHHHHHHHHHHHhcCCch--hhHHhhhhCcHHHHHHHhccCCHHH
Q 006877 410 NLSINDSNKGTIVNAGAIPDIVDVLKNG-----SMEARENAAATLFSLSVIDE--NKVAIGAAGAIPALIRLLCDGTPRG 482 (627)
Q Consensus 410 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~ 482 (627)
-++.+++.|..+..+.+---+-.+|..+ .+-.|-.+.+++..|..+++ .-..+...+++|..++.+..|+...
T Consensus 105 cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelS 184 (293)
T KOG3036|consen 105 CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELS 184 (293)
T ss_pred HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHH
Confidence 8899999999999876444444555433 35688899999999987764 4556667799999999999999999
Q ss_pred HHHHHHHHHHhccCCCchHHHHH--------cCChHHHHHhh-ccCChhhHHHHHHHHHHHhcChhhHHHHhhC---CCh
Q 006877 483 KKDAATAIFNLSIYQGNKARAVR--------AGIVPPLMRFL-KDAGGGMVDEALAILAILASHQEGKTAIGQA---EPI 550 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~~~~~~l~~--------~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~---g~v 550 (627)
+.-|..++..+..++.+-..+.. ...+..++..+ ..++..+...++.+..+|+.++..|.++... +.-
T Consensus 185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lr 264 (293)
T KOG3036|consen 185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLR 264 (293)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhc
Confidence 99999999998888877665542 12234444444 4488899999999999999999988877642 111
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 551 P-VLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 551 ~-~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
. ..-.+++ .++..+..-...+.++|.
T Consensus 265 d~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 265 DGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred cchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 1 1222333 345556665666666664
No 135
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.07 E-value=0.033 Score=55.52 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=147.5
Q ss_pred cCCCHHHHHHHHHHHHHHhhhChhhHHHHH-hcCCHHHHHHHhcC--CCHHHHHHHHHHHHhhccCCcchHHHhh-cCCh
Q 006877 352 ANGNVEEQRAAAGELRLLAKRNADNRVCIA-EAGAIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIVN-AGAI 427 (627)
Q Consensus 352 ~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~nLs~~~~~k~~i~~-~g~i 427 (627)
++-++-.+.-|+.++.++.. .+++|..+- +...-..++.+++. ++..+|.+.+-+++-|+.++.....|-. ...+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34455567778888888875 566666543 44566778888877 4788999999999999887665533332 3457
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHhcCCc--hhhHHhhhhCcHHHHHHHhccC---CHHHHHHHHH---H---------
Q 006877 428 PDIVDVLKNGS-MEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDG---TPRGKKDAAT---A--------- 489 (627)
Q Consensus 428 ~~Lv~lL~~~~-~e~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~---a--------- 489 (627)
..++.+.+... +.+..-+++++.|+.... .+...+.-.|-+.+-+..|..+ +.+.+.+.-. .
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~ 317 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC 317 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence 77777777653 567778889999987622 2333334445555666666542 3333221100 0
Q ss_pred -----HHHh-----ccC---------CCchHHHHHc--CChHHHHHhhccCChh-hHHHHHHHHHHHhc-ChhhHHHHhh
Q 006877 490 -----IFNL-----SIY---------QGNKARAVRA--GIVPPLMRFLKDAGGG-MVDEALAILAILAS-HQEGKTAIGQ 546 (627)
Q Consensus 490 -----L~nL-----~~~---------~~~~~~l~~~--g~v~~Lv~lL~~~~~~-~~~~Al~~L~~L~~-~~~~~~~i~~ 546 (627)
+..| +-. ..|...+.+. .++..|.++++..++. ....|+.=+..+.. .|+++..+.+
T Consensus 318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K 397 (432)
T COG5231 318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSK 397 (432)
T ss_pred HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence 1111 111 1133344443 3578899999876555 45556666666665 7999999999
Q ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 547 AEPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 547 ~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
.|+=..+++++.++++++|-.|..++..+-
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999986654
No 136
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.04 E-value=0.012 Score=53.37 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=100.1
Q ss_pred HHhhhhCcHHHHHHHhccCCH------HHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc--CChhhHHHHHHHH
Q 006877 460 VAIGAAGAIPALIRLLCDGTP------RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGMVDEALAIL 531 (627)
Q Consensus 460 ~~i~~~g~i~~Lv~lL~~~~~------~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~~~~~Al~~L 531 (627)
..+...+++..|++++.++.. .....++.++.+|-.+.-.-...++..+|...+.++.. .+..+...|+.+|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 345667899999999998763 66778899999998877666678888899999999865 3678899999999
Q ss_pred HHHhcChhhHHHHh-hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 532 AILASHQEGKTAIG-QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 532 ~~L~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
.++..++......+ +.=.++.|+..|+.+++.++.+|.+.+..|-...++
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999877654444 445699999999999999999999999998776554
No 137
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=97.02 E-value=0.0045 Score=58.71 Aligned_cols=123 Identities=14% Similarity=0.074 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHc----------------CChHHHHHhhcc------CChhhHHHHHHHHHHHh
Q 006877 478 GTPRGKKDAATAIFNLSIYQGNKARAVRA----------------GIVPPLMRFLKD------AGGGMVDEALAILAILA 535 (627)
Q Consensus 478 ~~~~~~~~a~~aL~nL~~~~~~~~~l~~~----------------g~v~~Lv~lL~~------~~~~~~~~Al~~L~~L~ 535 (627)
........++..|.||+..++....+++. ..+..|+..+.. ....-.+....+|.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34456667899999999988888766532 257778888755 23445688999999999
Q ss_pred cChhhHHHHhhC--CC--hHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCcHHHHHHhhh
Q 006877 536 SHQEGKTAIGQA--EP--IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE--LDAEEALKELSE 600 (627)
Q Consensus 536 ~~~~~~~~i~~~--g~--v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~l~~ 600 (627)
..+++|..+.+. +. +..|+.++.+.+..-|.-++.+|.|+|...+.+-..+.. .++++.|+.-+.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999999864 44 788888888887777888999999999998777555543 366777665544
No 138
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0004 Score=67.68 Aligned_cols=47 Identities=19% Similarity=0.567 Sum_probs=38.2
Q ss_pred ccCCCCccccc--Cce-eccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 250 FRCPISLELMK--DPV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 250 f~Cpic~~~m~--dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
-.|.||++-+. |-+ .+||.|.|.+.|+.+|+..-...||+|+..++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 46999998663 444 479999999999999998555789999987764
No 139
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00028 Score=68.83 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=40.2
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.|.|-||.+.+.+||++.|||+||..|-.+.+.. +..|+.|++...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 3889999999999999999999999998888874 456999987653
No 140
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00052 Score=68.62 Aligned_cols=48 Identities=25% Similarity=0.674 Sum_probs=39.8
Q ss_pred CCCccCCCCcccccC-------------ceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 247 PDDFRCPISLELMKD-------------PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 247 ~~~f~Cpic~~~m~d-------------Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.++-.|.||++-|-. |--+||||.+.-+|+..|++ ...+||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 367889999987543 35689999999999999998 5678999998853
No 141
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.37 Score=53.29 Aligned_cols=251 Identities=15% Similarity=0.168 Sum_probs=167.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhcc-CCcchH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKG 419 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~-~~~~k~ 419 (627)
++....++.+|++.-+-++..|+..+..+.-..++.- ...+|.|+.-|..+|+.++..|+.+++.||. ++.|.-
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 4577788999999999999999999988876555431 2456999999999999999999999999986 455544
Q ss_pred HHhhcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCC-HHHHHHHHHHHH--Hhcc
Q 006877 420 TIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT-PRGKKDAATAIF--NLSI 495 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~--nL~~ 495 (627)
.+ -|.+-++|-+. +--+......++.+|+..++ .++. ..+++|.+++.+.. ......++.++. |++.
T Consensus 218 ~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK-KLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 QL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK-KLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred cc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh-hhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 33 46666776543 23344445666677765542 1221 36788999988764 334444444433 5555
Q ss_pred CCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 006877 496 YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 574 (627)
Q Consensus 496 ~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~ 574 (627)
...+....++. +++.|-.++.+.++.+..-++-+++.+.. |+...++. -..+++.|...++.+|-.|...|..
T Consensus 289 g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHH
Confidence 44444443333 68888889999999998888888888877 45433222 3456788888889999999999998
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHhhhcCCh-HH-HHHHHHHHHHHH
Q 006877 575 ICTGDAEQLKIARELDAEEALKELSESGTD-RA-KRKAGSILELLQ 618 (627)
Q Consensus 575 L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~-~~-k~~A~~lL~~l~ 618 (627)
+.... +... ++..|+..+....+ .- -+....++..++
T Consensus 363 mVskk--Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 363 MVSKK--NLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred Hhhhh--hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 88754 2332 33445544333222 22 234455666554
No 142
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.1 Score=56.64 Aligned_cols=224 Identities=17% Similarity=0.177 Sum_probs=141.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
.++.++....+....++..|....+.+...-+.+.. --.+|.++.-+.........+++..|..|+......-...
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 455555555555667777766666665532211110 1124444444444467788899999999987766555555
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHH
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 502 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 502 (627)
-+.++|.+.+.|-+..+++++.+..+|..++..-+|... ...+|.|++-+.+++..+ ..++..|..=..- .
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV-----~ 363 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYT-PECLDSLGATTFV-----A 363 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccch-HHHHHhhcceeee-----e
Confidence 688999999999999999999999999998776665551 235677777776654222 2233333221111 1
Q ss_pred HHHcCChHHHHHh----hccCChhhHHHHHHHHHHHhcChhhHHHHhhC--CChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 503 AVRAGIVPPLMRF----LKDAGGGMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 503 l~~~g~v~~Lv~l----L~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
.++.-.+..++.+ +...+..+...++.+++|+|.--+....+... ..+|.|-..+.+..|++|.-|..+|..+-
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 1222333444444 44467778899999999999966555554431 23444444555566999999999997776
Q ss_pred cCC
Q 006877 577 TGD 579 (627)
Q Consensus 577 ~~~ 579 (627)
..-
T Consensus 444 e~~ 446 (569)
T KOG1242|consen 444 ERL 446 (569)
T ss_pred HHH
Confidence 644
No 143
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.085 Score=58.41 Aligned_cols=258 Identities=14% Similarity=0.119 Sum_probs=146.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..++++-+.+++.||..+..|+..+.....+....+..-...+++|.++.++.++...++..+.|+|+.++..-. ..+
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~ 441 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAI 441 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhc
Confidence 355666668889999999999999999887666666666667899999999998888889999999999976522 222
Q ss_pred hhcCChHHHHHHHcc---CCHHHHHHHHHHHHHhcCC--chhhHH----hhh-------------------------hCc
Q 006877 422 VNAGAIPDIVDVLKN---GSMEARENAAATLFSLSVI--DENKVA----IGA-------------------------AGA 467 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~---~~~e~~~~aa~~L~~Ls~~--~~~~~~----i~~-------------------------~g~ 467 (627)
...-....++..|-. +.|.+..+++|++.+|+.. +..... ... ..+
T Consensus 442 ~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 442 INQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred ccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHH
Confidence 222223333443332 3578889999999999621 100110 111 113
Q ss_pred HHHHHHHhccCCHHH----HHHHHHHHHHh----c---cCCCchHHH------------------------HHcCChHHH
Q 006877 468 IPALIRLLCDGTPRG----KKDAATAIFNL----S---IYQGNKARA------------------------VRAGIVPPL 512 (627)
Q Consensus 468 i~~Lv~lL~~~~~~~----~~~a~~aL~nL----~---~~~~~~~~l------------------------~~~g~v~~L 512 (627)
...|.++++.....+ +.....++..| . .+.+.+..+ +...+...+
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lf 601 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLF 601 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Confidence 344444443322111 11111111100 0 000011100 111223344
Q ss_pred HHhhcc-CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006877 513 MRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELD 590 (627)
Q Consensus 513 v~lL~~-~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g 590 (627)
++++.+ .+..+.+.|+.+++.|+.+-..+-+-.-..+.|.|..=|++ ....+...|+.....||..-.+...... .+
T Consensus 602 lri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~-d~ 680 (859)
T KOG1241|consen 602 LRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC-DE 680 (859)
T ss_pred HHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HH
Confidence 455544 34445666777777776654333222223456666666644 3455777788888888886544333222 24
Q ss_pred cHHHHHHhhhcC
Q 006877 591 AEEALKELSESG 602 (627)
Q Consensus 591 ~i~~L~~l~~~~ 602 (627)
++..|+.-++++
T Consensus 681 ~mt~Lvq~Lss~ 692 (859)
T KOG1241|consen 681 LMTVLVQCLSSP 692 (859)
T ss_pred HHHHHHHHccCc
Confidence 677777777665
No 144
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.038 Score=60.09 Aligned_cols=225 Identities=18% Similarity=0.161 Sum_probs=148.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC------C
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN------D 415 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~------~ 415 (627)
..+.-+.....+.|+.++..|+..|..|.....-.+. .....++.+++.+..+|..|+.++.-.+.- .
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3444488888889999999999999988864333332 245678899999999999887666554321 1
Q ss_pred cchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC----------------------------------------
Q 006877 416 SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI---------------------------------------- 455 (627)
Q Consensus 416 ~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~---------------------------------------- 455 (627)
++-+.=....++..+.+.+++.+..++..|+.+|+.+-..
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 1111111234566777777766655555555554432111
Q ss_pred -----------chhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhH
Q 006877 456 -----------DENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMV 524 (627)
Q Consensus 456 -----------~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~ 524 (627)
+.....|+.+|+-..++.=|.+.-.+++++|+..++.|+.+...-. ..++..|++++.++...+.
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA----~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA----VRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhccHHHHHH
Confidence 0111234445555666666666667899999999999987544321 1246789999988888899
Q ss_pred HHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 525 DEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 525 ~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
..|+.+|..++.+-. ++..-++.+++.|...++.+|+..-.+|.+.-..+.+
T Consensus 428 L~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~ 479 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNARVSDLE 479 (823)
T ss_pred HHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHH
Confidence 999999999988732 2334567778888888888888877777665444433
No 145
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.73 E-value=0.0032 Score=43.24 Aligned_cols=39 Identities=44% Similarity=0.474 Sum_probs=35.6
Q ss_pred hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 457 ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 457 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
+++..+.+.|+++.|++++.++++++++.++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477788899999999999999899999999999999973
No 146
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.71 E-value=0.056 Score=61.66 Aligned_cols=228 Identities=16% Similarity=0.146 Sum_probs=157.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccC-C---cchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHH-hcCCchhhH
Q 006877 386 IPLLVELLSSTDPRTQEHAVTALLNLSIN-D---SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS-LSVIDENKV 460 (627)
Q Consensus 386 i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~---~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~-Ls~~~~~~~ 460 (627)
+|..++.|-+ |.+-+.+|.-|+.- + -.-..-..-|++|-++++|++...|++..-+-+=.. |+.++..+.
T Consensus 474 LPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 474 LPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence 4555555543 33444445444432 2 112222367999999999999999888765544443 466667778
Q ss_pred HhhhhCcHHHHHHHhcc-C--CHHHHHHHHHHHHHhccC-CCchHHHHHcCChHHHHHhhccC-ChhhHHHHHHHHHHHh
Q 006877 461 AIGAAGAIPALIRLLCD-G--TPRGKKDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDA-GGGMVDEALAILAILA 535 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~-~--~~~~~~~a~~aL~nL~~~-~~~~~~l~~~g~v~~Lv~lL~~~-~~~~~~~Al~~L~~L~ 535 (627)
.+++.++-..++..|.. . +++-+..|+-+|..++.+ .-++....+.+.+...+++|.++ .+-+..=++-+|+.|=
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 88888777777777766 2 357777888889988875 45666778889999999999874 5666677888888887
Q ss_pred cC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC----HHHHHHH------------HHcCcH---HHH
Q 006877 536 SH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD----AEQLKIA------------RELDAE---EAL 595 (627)
Q Consensus 536 ~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~----~~~~~~~------------~~~g~i---~~L 595 (627)
.+ ++.|-.=.+.++...|..+|....+++|..|+.+|..+-.+. ++....+ .+.-+. ..+
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l 708 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL 708 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence 65 444433446789999999999999999999999999988763 2211111 122122 377
Q ss_pred HHhhhcCChHHHHHHHHHHHHHH
Q 006877 596 KELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 596 ~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
..+++.|++-++......|..+.
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHH
Confidence 78889999999888777776654
No 147
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0014 Score=64.86 Aligned_cols=58 Identities=21% Similarity=0.421 Sum_probs=47.6
Q ss_pred cccCCCCCCCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 237 GLMKHRSPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 237 ~~~~~~~~~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
...+......|+.-.||+|..--.+|..+ .+|-.||-.||..+.. .+.+||+|+.+..
T Consensus 288 ~~~se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 288 QYNSESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred hcccccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 33444555677888999999988888776 6799999999999998 7788999998764
No 148
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.69 E-value=0.046 Score=60.14 Aligned_cols=150 Identities=13% Similarity=0.163 Sum_probs=106.6
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH---HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHH
Q 006877 467 AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA---RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA 543 (627)
Q Consensus 467 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~---~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~ 543 (627)
.+...+..|++.++.++..|+..+..|+..-.++. .+...|+ .|.+.|...++++.-..++++..++..-..- .
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~-k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMT-K 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccc-c
Confidence 34556678889999999999999998886444433 2333444 3778888888888777777776666532111 1
Q ss_pred Hh--hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 544 IG--QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 544 i~--~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+. -.+.+|.|..+|++.+.+++++++..+..+|.++++++..-.=..+---|++++.+.+...++.|...+..+.+
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 11 13789999999999999999999999999999998744222111233457778888888889888877776654
No 149
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.013 Score=63.58 Aligned_cols=213 Identities=19% Similarity=0.146 Sum_probs=136.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc------h-hhHH
Q 006877 389 LVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID------E-NKVA 461 (627)
Q Consensus 389 Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~------~-~~~~ 461 (627)
|..+....|..++.+|+..|+.|+..-..- .-.....++.+++....++..|..+++-.+... + ...+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 777778889999999999999987632211 223566788888888889988876666543222 1 1111
Q ss_pred hhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC-------------------------------------------
Q 006877 462 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG------------------------------------------- 498 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~------------------------------------------- 498 (627)
+. ..++..+.+.+++.+-.++-.|+.+|+.+....+
T Consensus 278 l~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 278 LK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 11 1355556666666555555555554443321100
Q ss_pred --------chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHH
Q 006877 499 --------NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAA 570 (627)
Q Consensus 499 --------~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~ 570 (627)
.-..++.+|+-..++.=|.++--++...|+..+..|+.+..+- ...++..|+++++..-..+|..|..
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfNDE~~~VRL~ai~ 432 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFNDEIEVVRLKAIF 432 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1112344555566777777666778889999999998854322 1236788999998888889999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 571 VLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 571 ~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
+|..++.+- .+++..++.++.-+.+.++.+++....+|++.
T Consensus 433 aL~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 433 ALTMISVHL------AIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999888752 23334556666666666777777766666654
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.63 E-value=0.00096 Score=68.71 Aligned_cols=47 Identities=26% Similarity=0.627 Sum_probs=38.5
Q ss_pred CCCCccCCCCcccccCce----eccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 246 IPDDFRCPISLELMKDPV----IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv----~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
+.+--+||+|++.|-+-+ ++.|.|+|.-.|+++|+. .+||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 344558999999997666 358999999999999976 58999997654
No 151
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.60 E-value=0.19 Score=54.41 Aligned_cols=236 Identities=16% Similarity=0.168 Sum_probs=140.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc-
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA--DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN- 417 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~--~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~- 417 (627)
...+...+..|++..+.++.+|+.....+++--. .-...+...| -.|..-|...++++.-..+.+++.+...-.-
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 4578888999999999999999998887764211 0122344444 3466777777888776666666655322111
Q ss_pred hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh-CcHHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 006877 418 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 496 (627)
+-+--..|++|.|.-+|++....+..+..+.+..++....-..-.-+- ..--.|+++|++.+.+.+.+|..++..++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 111113689999999999998899999999888887654321111111 2234577888888888888888777777642
Q ss_pred CCchH------------------------HHH-H-cCC---hHHHHHhhccCChhhHHHHHHHHHHHhcC--hhhHHHHh
Q 006877 497 QGNKA------------------------RAV-R-AGI---VPPLMRFLKDAGGGMVDEALAILAILASH--QEGKTAIG 545 (627)
Q Consensus 497 ~~~~~------------------------~l~-~-~g~---v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~--~~~~~~i~ 545 (627)
-.-+. .++ + .|- +|.|+.--..++..++.-.+.+++-+-.. ...+..+.
T Consensus 761 iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy 840 (975)
T COG5181 761 IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY 840 (975)
T ss_pred cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111 1 232 22222222224445555555544443332 11122221
Q ss_pred hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 546 QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 546 ~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
...|.|-+-|...++.-|..|..++.+|+-+.+
T Consensus 841 --~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 841 --SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred --HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 234555556666677778888888888887654
No 152
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.59 E-value=0.039 Score=50.12 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=97.6
Q ss_pred HHHHHcCChHHHHHhhccCC------hhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC--CHHHHHHHHHHH
Q 006877 501 ARAVRAGIVPPLMRFLKDAG------GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVL 572 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~~------~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~A~~~L 572 (627)
..+++.||+..|++++.++. ..+...++.++..|..+.-.-=......++.+++.++... ++.+...|.++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 46788999999999998754 4677889999999999865333455556889999999754 477899999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 573 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 573 ~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
-+++.+++.....+.++=-++.|+..++.+++..+.+|..++--|
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999988778788877799999999999999999999988766
No 153
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.022 Score=63.14 Aligned_cols=244 Identities=16% Similarity=0.121 Sum_probs=154.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
...+.++......|.+.+.-.-..+.+.+...+. ...+++..+++=..++++.+|..|++.++.+-.+. +
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~-----~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~-----i 118 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD-----LAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK-----I 118 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCch-----HHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehH-----H
Confidence 3566677777777766665555566666665443 22356777777778889999999988877664321 1
Q ss_pred hhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc-h
Q 006877 422 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN-K 500 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-~ 500 (627)
..-...++.+.++++++.++..++....++ .+.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.+ -
T Consensus 119 -~ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 -TEYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred -HHHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 123578899999999999999998888877 445566667779999999999988999999999999999875543 1
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 501 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
...+..-.+..++..+...+..-+-..+..+.+-.-.++ +.+. ..+..+...|++.++.+.-.++.++.++...-+
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence 111222234444555543333323333333332222222 2111 245566666777777777777777777776654
Q ss_pred HHHHHHHHcCcHHHHHHhhhcCC
Q 006877 581 EQLKIARELDAEEALKELSESGT 603 (627)
Q Consensus 581 ~~~~~~~~~g~i~~L~~l~~~~~ 603 (627)
. .....-..+.++|+.++..+.
T Consensus 272 ~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 272 Q-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred H-HHHHHHHHhcccceeeecccc
Confidence 4 222222245556666665554
No 154
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.25 Score=55.20 Aligned_cols=214 Identities=17% Similarity=0.172 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC---------------CCHHHHHHHHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS---------------TDPRTQEHAVTA 407 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~A~~~ 407 (627)
.+......|.+.+.-+...++..+..+++.+++.-..+.+ .++.||..|+. +||-+|...+..
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 3344444555555555555555556666555555444443 44555555532 245566666666
Q ss_pred HHhhccCCcchHHHhhcCChHHHHHHHccC------CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHH
Q 006877 408 LLNLSINDSNKGTIVNAGAIPDIVDVLKNG------SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPR 481 (627)
Q Consensus 408 L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~------~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 481 (627)
|.-|-.++......+. ..|-++..+. .--+...++.++..+-.+...+.. ++..|-++|.+.+..
T Consensus 258 LriLGq~d~daSd~M~----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvl-----ainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 258 LRILGQNDADASDLMN----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVL-----AINILGKFLLNRDNN 328 (866)
T ss_pred HHHhcCCCccHHHHHH----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHH-----HHHHHHHHhcCCccc
Confidence 6555544332222111 1122222211 012333333444333322222222 333444444444444
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC
Q 006877 482 GKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS 561 (627)
Q Consensus 482 ~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~ 561 (627)
.+.-|+.+|......+++...= + =..+++.|.+++..++..|+..+..|......+ ..+..|+.+|...+
T Consensus 329 irYvaLn~L~r~V~~d~~avqr--H--r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~------~mv~eLl~fL~~~d 398 (866)
T KOG1062|consen 329 IRYVALNMLLRVVQQDPTAVQR--H--RSTILECLKDPDVSIKRRALELSYALVNESNVR------VMVKELLEFLESSD 398 (866)
T ss_pred eeeeehhhHHhhhcCCcHHHHH--H--HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH------HHHHHHHHHHHhcc
Confidence 4455555544444333221110 0 124667777777788888887777776543333 23455677776666
Q ss_pred HHHHHHHHHHHHHHhc
Q 006877 562 PRNRENAAAVLWAICT 577 (627)
Q Consensus 562 ~~~~~~A~~~L~~L~~ 577 (627)
+..|...+.-+..++.
T Consensus 399 ~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 399 EDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667666655555554
No 155
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.48 E-value=0.006 Score=45.14 Aligned_cols=55 Identities=31% Similarity=0.162 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 006877 439 MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 493 (627)
Q Consensus 439 ~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 493 (627)
+.+|..|+++|.+++........-....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887665555555568999999999999899999999999876
No 156
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.48 E-value=0.13 Score=58.40 Aligned_cols=238 Identities=13% Similarity=0.099 Sum_probs=138.5
Q ss_pred ccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHH-HHHHHHHhhccCCcc
Q 006877 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE-HAVTALLNLSINDSN 417 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~-~A~~~L~nLs~~~~~ 417 (627)
++...+..+++.|...+.++|..|+++|.-+++.-.+.+-. ..+..|..-+-++....+. .++.....++.-++.
T Consensus 44 Se~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~ 119 (1233)
T KOG1824|consen 44 SERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPS 119 (1233)
T ss_pred chhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCc
Confidence 35668999999999999999999999999998544333321 1123333332233333332 223322222322222
Q ss_pred hHHHhhcCChHHHHHHHccCC------HHHHHHHHHHHHHhcC-CchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHH
Q 006877 418 KGTIVNAGAIPDIVDVLKNGS------MEARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 490 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~~------~e~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 490 (627)
..........+.+...|..+. ..++..++..+..+-. ....-.. ...+.+..++.-+.+....+++.|+.+|
T Consensus 120 ~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 120 SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 223333445555555554432 2245555554443311 1110000 1124455555556666678899999999
Q ss_pred HHhccCCCchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHH---hcCCHHHHH
Q 006877 491 FNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI---RTGSPRNRE 566 (627)
Q Consensus 491 ~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL---~~~~~~~~~ 566 (627)
..|+..-.+ .+-.+++..|++=|.. ..+....--+.+|+.+|.....|.--.-...+|.+..+. ...+++.|+
T Consensus 199 ~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 199 GHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHH
Confidence 999875432 2333456666666644 444555666777777777655543222235788888888 556789999
Q ss_pred HHHHHHHHHhcCCHHHHH
Q 006877 567 NAAAVLWAICTGDAEQLK 584 (627)
Q Consensus 567 ~A~~~L~~L~~~~~~~~~ 584 (627)
.+..++..+....|..+.
T Consensus 276 ~~lQale~fl~rcp~ei~ 293 (1233)
T KOG1824|consen 276 YCLQALESFLRRCPKEIL 293 (1233)
T ss_pred HHHHHHHHHHHhChhhhc
Confidence 999999998888775444
No 157
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.46 E-value=0.3 Score=54.08 Aligned_cols=232 Identities=18% Similarity=0.188 Sum_probs=140.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhh--HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN--RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
..+...+..|++.++.++.+|+..+..++.--... ...+...| -.|...|...++++.-..+.+|..+...- .-.
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvi-gm~ 875 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVI-GMT 875 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhc-ccc
Confidence 45667778888999999999999998887522111 22344445 34778888888887665555554442211 011
Q ss_pred HHh--hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh---CcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 006877 420 TIV--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA---GAIPALIRLLCDGTPRGKKDAATAIFNLS 494 (627)
Q Consensus 420 ~i~--~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 494 (627)
.+. ..|.+|.|.-+|++....+++++...+..++....- .+... ..--.|+++|+..+...+.+|..++..++
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE--~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE--YVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 111 367899999999999999999999999988755422 22221 22345777788777888888877777776
Q ss_pred cCCCchH------------------------HHH-H-cCC---hHHHHHhhccCChhhHHHHHHHHHHHhcC--hhhHHH
Q 006877 495 IYQGNKA------------------------RAV-R-AGI---VPPLMRFLKDAGGGMVDEALAILAILASH--QEGKTA 543 (627)
Q Consensus 495 ~~~~~~~------------------------~l~-~-~g~---v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~--~~~~~~ 543 (627)
..-.-+. .++ + .|- +|.|+.--..++..++.-.+.+++-+-.. .-++..
T Consensus 954 kaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY 1033 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY 1033 (1172)
T ss_pred HhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH
Confidence 3211110 112 1 222 33333322335555666666655555442 223333
Q ss_pred HhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 544 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 544 i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
+. ...|.|-+-|-..+..-|..|+.++.+++-+.+
T Consensus 1034 iy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1034 IY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 32 245666666666667778888888888887643
No 158
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.45 E-value=0.07 Score=60.35 Aligned_cols=265 Identities=15% Similarity=0.133 Sum_probs=154.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHHHhhc
Q 006877 346 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNA 424 (627)
Q Consensus 346 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~ 424 (627)
.|++++.+.|.+.+.-|...|..-......+-..=.+...+..|+++|.+.+.++|..|+.+|+-|+.- .+.+- .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l----e 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL----E 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH----H
Confidence 788899999988888888877654432222222222345788999999999999999999999988731 11111 1
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHH-HHhcCCchhhHHhhhhCcHHHHHHHhccC------CHHHHHHHHHHHHHhccCC
Q 006877 425 GAIPDIVDVLKNGSMEARENAAATL-FSLSVIDENKVAIGAAGAIPALIRLLCDG------TPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 425 g~i~~Lv~lL~~~~~e~~~~aa~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~nL~~~~ 497 (627)
..++.|..-+-++.+..+.-+.-.| ...+...+.........+++.+...+... ...++..++..+..+-..-
T Consensus 85 ~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 85 TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 1233333333344455554333322 22333333333333334445555444432 2335666666665443321
Q ss_pred CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHh
Q 006877 498 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAIC 576 (627)
Q Consensus 498 ~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~ 576 (627)
+.-.-=...++...++..+.+....++..|+.+|+.|+....+- .. .+.+..|++-|.. ..+.....-+.+|..+|
T Consensus 165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~-ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~ 241 (1233)
T KOG1824|consen 165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD-LY--VELIEHLLKGLSNRTQMSATRTYIQCLAAIC 241 (1233)
T ss_pred cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH-HH--HHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 11111134556677777888788889999999999999854321 11 1345555555543 33444555567777777
Q ss_pred cCCHHHHHHHHHcCcHHHHHHhh---hcCChHHHHHHHHHHHHHH
Q 006877 577 TGDAEQLKIARELDAEEALKELS---ESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 577 ~~~~~~~~~~~~~g~i~~L~~l~---~~~~~~~k~~A~~lL~~l~ 618 (627)
...+..... .-...++.+.+.. +..+++.+++...+++.+-
T Consensus 242 r~ag~r~~~-h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 242 RQAGHRFGS-HLDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHhcchhhc-ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 765432211 1124677777777 6678999999999998764
No 159
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.45 E-value=0.11 Score=50.93 Aligned_cols=140 Identities=21% Similarity=0.160 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHhccCCCchH-HHHH-cCChHHHHHhhccCC-----h-------hhHHHHHHHHHHHhcChhhHHHH
Q 006877 479 TPRGKKDAATAIFNLSIYQGNKA-RAVR-AGIVPPLMRFLKDAG-----G-------GMVDEALAILAILASHQEGKTAI 544 (627)
Q Consensus 479 ~~~~~~~a~~aL~nL~~~~~~~~-~l~~-~g~v~~Lv~lL~~~~-----~-------~~~~~Al~~L~~L~~~~~~~~~i 544 (627)
+++.++.|+.-|+.--..-++-. .+.. -|.+..|++=+.+.. + .-+..|++.|..+++|++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 45667776666554433333444 3444 477888776544311 1 22457888889999999999999
Q ss_pred hhCCChHHHHHHHhcCC-----HHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 545 GQAEPIPVLMEVIRTGS-----PRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 545 ~~~g~v~~Lv~lL~~~~-----~~~~~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
+++...-.|..+|+..+ +..|-.+.+++..|...+. +....+.+..++|..+..++.|+.-.|..|.-++.-+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99998888888997644 3478889999999998654 56677888899999999999999999999999988664
No 160
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.39 E-value=0.3 Score=52.55 Aligned_cols=269 Identities=14% Similarity=0.117 Sum_probs=166.6
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhChhhHHHHHhcCCH--HHHHHHhcC-CCHHHHHHHHHHHHh-hcc----
Q 006877 343 AIDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAI--PLLVELLSS-TDPRTQEHAVTALLN-LSI---- 413 (627)
Q Consensus 343 ~i~~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i--~~Lv~lL~~-~~~~~~~~A~~~L~n-Ls~---- 413 (627)
....+++..-.+. ....++++..+.+.+. +......+...+.| .....-++. ++..+|..|+.+|.+ |-.
T Consensus 134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~n 212 (858)
T COG5215 134 LMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGN 212 (858)
T ss_pred HHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555544433 4467889999999885 33333444444432 222223343 477889999999987 322
Q ss_pred --CCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHH
Q 006877 414 --NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 490 (627)
Q Consensus 414 --~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 490 (627)
.+.+|..+ +...++.-+..+.+++..|..+|..+-... ..-....+.-........+++.++++...|+...
T Consensus 213 f~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfW 287 (858)
T COG5215 213 FCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFW 287 (858)
T ss_pred hcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 22333333 344556666778899998888887764322 3333444444445566777888889988888877
Q ss_pred HHhccCCC-----------------chHHHHHcCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHHHhh
Q 006877 491 FNLSIYQG-----------------NKARAVRAGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAIGQ 546 (627)
Q Consensus 491 ~nL~~~~~-----------------~~~~l~~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~L~~~~~~~~~i~~ 546 (627)
..+|...- +-.+..-+.++|.|+.+|.. .+......|..+|...+..... .|.+
T Consensus 288 sticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~i~~ 365 (858)
T COG5215 288 STICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--KIMR 365 (858)
T ss_pred HHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--HhHH
Confidence 66664211 11111224578999999965 2234455666666555543221 1221
Q ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 547 AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 547 ~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
. ++..+-.-+++++...++.|+.++..+..+..+.+..-.-..++|.+...+.+..--++..++|++..+.++
T Consensus 366 p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 366 P-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred H-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 1 233333345567788999999999998887766554445556888888888888888999999999888764
No 161
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.15 Score=59.25 Aligned_cols=217 Identities=17% Similarity=0.173 Sum_probs=131.1
Q ss_pred cCCCHHHHHHHHHHHHhhccCCcchHHHhh--cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhhHHhhhhCcHH
Q 006877 394 SSTDPRTQEHAVTALLNLSINDSNKGTIVN--AGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAAGAIP 469 (627)
Q Consensus 394 ~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~ 469 (627)
++.+..+|..+-.+|..++..+.......+ ..+...+.+.+++....++...+.+|..|-... +....+. ..|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~--k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP--KLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH--HHHH
Confidence 445788999999999999776443332221 223344445555555555655555555543222 2222221 2344
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcC------ChHHHHHhhccC--ChhhHHHHH--HHHHHHhcChh
Q 006877 470 ALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAG------IVPPLMRFLKDA--GGGMVDEAL--AILAILASHQE 539 (627)
Q Consensus 470 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g------~v~~Lv~lL~~~--~~~~~~~Al--~~L~~L~~~~~ 539 (627)
-++-.++..+...+..|...|.+|+. .....+.| .|...+..+..+ .......|. -++..+....
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~- 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF- 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH-
Confidence 44444477788889999988888873 11111112 344444444321 222222222 2222222211
Q ss_pred hHHHHhhC----CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 540 GKTAIGQA----EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 540 ~~~~i~~~----g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
..+++. +.+..+..+|.++++.+...|+..+..++..-|+.+..-...-+++.+..+++.++-..+.++..+|+
T Consensus 817 --~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 817 --KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred --hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 112222 34555556666788999999999999999998877766666668999999999999999999999999
Q ss_pred HHHh
Q 006877 616 LLQR 619 (627)
Q Consensus 616 ~l~~ 619 (627)
.|.+
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 8864
No 162
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.33 E-value=0.0076 Score=61.97 Aligned_cols=51 Identities=25% Similarity=0.480 Sum_probs=44.2
Q ss_pred ccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccCCCCCc
Q 006877 250 FRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 301 (627)
Q Consensus 250 f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 301 (627)
+.|.|++++.++||+- .+||.|+|.-|++++. .+.+||.+++++...++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~-e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA-ETGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHH-HcCCCCCCCCcCCHHHeee
Confidence 4699999999999985 6999999999999998 5667999999987666554
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.29 E-value=0.028 Score=47.18 Aligned_cols=67 Identities=19% Similarity=0.353 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHh--cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 006877 523 MVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIR--TGSPRNRENAAAVLWAICTGDAEQLKIAREL 589 (627)
Q Consensus 523 ~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~--~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~ 589 (627)
.+...+.+|+|||. ++..+..+.+.|+++.++..-. ..+|-++|.|+.++.+||.+++++...+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 34568899999998 5778889999999999988764 4679999999999999999999888777553
No 164
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.23 Score=55.43 Aligned_cols=226 Identities=16% Similarity=0.110 Sum_probs=119.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc---------hh
Q 006877 388 LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID---------EN 458 (627)
Q Consensus 388 ~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~---------~~ 458 (627)
.|.+=|++++.-++-.|+.+|++++..+- .....|.+.++|++.++-+++.|+-+...+-.-. ..
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~Em------ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~ 184 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPEM------ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAF 184 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHHH------hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHH
Confidence 34445667788888889999999875322 2345788889999999999999988877664322 12
Q ss_pred hHHhhhh------CcHHHHHHHhccCC------HHHHHHHHHHHHHhccCCCchHHHHHcCC--------hHHHHHhhcc
Q 006877 459 KVAIGAA------GAIPALIRLLCDGT------PRGKKDAATAIFNLSIYQGNKARAVRAGI--------VPPLMRFLKD 518 (627)
Q Consensus 459 ~~~i~~~------g~i~~Lv~lL~~~~------~~~~~~a~~aL~nL~~~~~~~~~l~~~g~--------v~~Lv~lL~~ 518 (627)
+..+.+. +++..+.+++..+. .+....-+..|.++....-....= -+|+ +=.++++|..
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd-v~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD-VHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC-ccCCCchHHHHHHHHHHHHhcC
Confidence 2222222 23344444444321 122233344555554321100000 0111 1124455666
Q ss_pred CChhhHHHHHHHHHHHhcChhhHHHHhhC---CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-------
Q 006877 519 AGGGMVDEALAILAILASHQEGKTAIGQA---EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE------- 588 (627)
Q Consensus 519 ~~~~~~~~Al~~L~~L~~~~~~~~~i~~~---g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~------- 588 (627)
++.+..+....+|+.++++.+.-.-+.++ .+|..+..+. .+...++.|+.+|...-.+...+...+.=
T Consensus 264 ~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 264 NDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV 341 (866)
T ss_pred CCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence 67777777777777777754321111110 1222222221 34456666666666655544432221110
Q ss_pred ---cCc----HHHHHHhhhcCChHHHHHHHHHHHHHHhHHh
Q 006877 589 ---LDA----EEALKELSESGTDRAKRKAGSILELLQRIDM 622 (627)
Q Consensus 589 ---~g~----i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~~ 622 (627)
..+ =..+++.+++.++-.|+.|.+++..|...++
T Consensus 342 ~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N 382 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN 382 (866)
T ss_pred cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc
Confidence 011 1245677788888899999888887765443
No 165
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.26 E-value=0.0062 Score=45.09 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 006877 398 PRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSL 452 (627)
Q Consensus 398 ~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~L 452 (627)
+.+|..|+++|++++........-....+++.|+.+|++++.+++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999887655444445677899999999999999999999999875
No 166
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.22 E-value=0.4 Score=51.65 Aligned_cols=264 Identities=19% Similarity=0.140 Sum_probs=137.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCc------
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS------ 416 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~------ 416 (627)
..+.|-..|++.-..++.++++.+..++..+. -..+. ...|..|-.+|+++....|-.|+.+|..|+...+
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 44555556665556788999999999886541 11111 2356778889999999999999999999986422
Q ss_pred --chHHHh-h-cC--ChHHHHHHHccCCHHHHHHHHHHHHHhcCC--chhhHHhhhh-------------CcHHHHHHHh
Q 006877 417 --NKGTIV-N-AG--AIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAA-------------GAIPALIRLL 475 (627)
Q Consensus 417 --~k~~i~-~-~g--~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~--~~~~~~i~~~-------------g~i~~Lv~lL 475 (627)
+-+.++ + .. ..-.+..+|+.|+.+....-...+-++..+ +..+..+++. ..+..|.+.|
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L 421 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSL 421 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 122222 1 22 233567777787766655544444443221 1222221111 1122222222
Q ss_pred c-cCCHHHHHHHHHHHHHhccC-CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHH
Q 006877 476 C-DGTPRGKKDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVL 553 (627)
Q Consensus 476 ~-~~~~~~~~~a~~aL~nL~~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~L 553 (627)
. .|..+.++.++.+|..+..+ ++.+.++ +..|..++.+. +.-+-++.+|..|........ .-...+..+
T Consensus 422 ~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~--~P~~yvrhI 492 (898)
T COG5240 422 LQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRILGILGREGPRAK--TPGKYVRHI 492 (898)
T ss_pred HhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHHHHHhcccCCCCC--CcchHHHHH
Confidence 1 12333344444444333322 1222221 12233333221 111223333333333110000 000123333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHH
Q 006877 554 MEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 554 v~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~ 621 (627)
..-+--.+.-+|..|+.+|...+-+-.+ .+....+...|-..+.+.++.++..|.-+|++|+..+
T Consensus 493 yNR~iLEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 493 YNRLILENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 3333335677888999999776654322 1223345566778889999999999999999997543
No 167
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.03 E-value=0.031 Score=53.06 Aligned_cols=123 Identities=17% Similarity=0.172 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcchHHHhh----------------cCChHHHHHHHccC------CHHHHHHHHHHHHHh
Q 006877 395 STDPRTQEHAVTALLNLSINDSNKGTIVN----------------AGAIPDIVDVLKNG------SMEARENAAATLFSL 452 (627)
Q Consensus 395 ~~~~~~~~~A~~~L~nLs~~~~~k~~i~~----------------~g~i~~Lv~lL~~~------~~e~~~~aa~~L~~L 452 (627)
.++......++.+|.||+..+.....+.. ..++..|++.+..| ...-....+.+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 33444556778889999887766664442 23677788887662 234567889999999
Q ss_pred cCCchhhHHhhhh--Cc--HHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHc---CChHHHHHhhc
Q 006877 453 SVIDENKVAIGAA--GA--IPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRA---GIVPPLMRFLK 517 (627)
Q Consensus 453 s~~~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~---g~v~~Lv~lL~ 517 (627)
|..+..|..+... +. +..|+....+.+.--+.-++.+|.|+|...+....+... +++|.|+--|.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999999986 44 777888888787777888999999999999988888763 45666555554
No 168
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.092 Score=58.42 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=97.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHH-
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT- 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~- 420 (627)
.....+.+.+++.++.++..++-....+-. .+.......|.++.|-.++.+.++.+..+|+.+|..+...+.+...
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 466778888999999999999888888754 3455777889999999999999999999999999999764432111
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCch
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 500 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 500 (627)
-...-.+..++..+..-++-.+ +.+|-.++..-.... .-....+..+...|.+.+..+...+..++.++.......
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~ 273 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV 273 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH
Confidence 1112223333333333222222 223333322211111 001123344444555555555555666665555543333
Q ss_pred HHHHHcCChHHHHHhhccC
Q 006877 501 ARAVRAGIVPPLMRFLKDA 519 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~ 519 (627)
...+....-++|+.++...
T Consensus 274 ~~~~~~K~~~pl~tlls~~ 292 (734)
T KOG1061|consen 274 NELLFKKVAPPLVTLLSSE 292 (734)
T ss_pred HHHHHHHhcccceeeeccc
Confidence 3333334445555555443
No 169
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.00 E-value=0.15 Score=52.92 Aligned_cols=196 Identities=13% Similarity=0.134 Sum_probs=146.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHH-----HHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRV-----CIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLSIN 414 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~-----~i~~~--g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~ 414 (627)
+.+..|+..|..-+.+.+..+......+.......+. ++... .++..|+.-- +++++--.+..+|.....+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence 5788899999999999999999999998876554433 33332 2233333322 3666777888888888888
Q ss_pred CcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhc-CCchhhHHhhhh---CcHHHHHHHhccCCHHHHHHHHHHH
Q 006877 415 DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLS-VIDENKVAIGAA---GAIPALIRLLCDGTPRGKKDAATAI 490 (627)
Q Consensus 415 ~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls-~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL 490 (627)
+.....+.....+..+.+....++-++...|..++..+- .+.......... .++...-.+|.+++--++..++..|
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 777777778888999999999999999999999998764 333333333333 6777888999999999999999999
Q ss_pred HHhccCCCchHHHHH----cCChHHHHHhhccCChhhHHHHHHHHHHHhcChh
Q 006877 491 FNLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 539 (627)
Q Consensus 491 ~nL~~~~~~~~~l~~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~ 539 (627)
+.|..+..|...|.. ..-+..++.+|.+.+..++-.|..++.-...+|.
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 999999988775543 4568889999999999999999999998888754
No 170
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.97 E-value=0.0029 Score=64.55 Aligned_cols=35 Identities=17% Similarity=0.622 Sum_probs=31.2
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHH
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD 281 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~ 281 (627)
.+++.||||...+++|++++|||..|+.|-...+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 47899999999999999999999999999775543
No 171
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.96 E-value=0.27 Score=47.47 Aligned_cols=141 Identities=15% Similarity=0.115 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcChh--hHHHHhhCCChHH
Q 006877 480 PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQE--GKTAIGQAEPIPV 552 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~L~~~~~--~~~~i~~~g~v~~ 552 (627)
..-..+|+..|-.++++++.+..++++.+--.|..+|.. +.+-++-.++++++.|....+ .-..+...++||.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 345678899999999999999999999887777777743 445677889999999998644 3455667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCHH---HHHHHHHcC----cHHH-HHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 553 LMEVIRTGSPRNRENAAAVLWAICTGDAE---QLKIARELD----AEEA-LKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 553 Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~---~~~~~~~~g----~i~~-L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
.++.+..|+...|.-|..++.-+-.++.. .|+..-.-- ++.. +..+.+.+++|+-+.+.++.-.|.+.
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999887766542 222222111 2222 33456667888888888777777543
No 172
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.95 E-value=0.19 Score=56.97 Aligned_cols=67 Identities=27% Similarity=0.283 Sum_probs=30.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 006877 467 AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA 535 (627)
Q Consensus 467 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~ 535 (627)
+++++.+++.++++.+++.|+-++.++-.. ++....+.|.+..+..++.+.++.++..|+..|..+.
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 344444444444445555555444444322 1222233444444444444444554444444444443
No 173
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0021 Score=61.69 Aligned_cols=56 Identities=21% Similarity=0.447 Sum_probs=43.3
Q ss_pred CCCccCCCCcccccCce----------eccCcccccHHHHHHHHHhCC-CCCCCccccccCCCCCcc
Q 006877 247 PDDFRCPISLELMKDPV----------IVSTGQTYERSCIQKWLDAGH-KTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv----------~~~cg~t~~r~ci~~~~~~~~-~~CP~~~~~l~~~~l~~n 302 (627)
.++-.|.+|++-+.+.+ .++|+|.|..-||..|.--|. .+||.|..+........|
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 46778999988665444 579999999999999998665 699999987765544433
No 174
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.87 E-value=0.81 Score=51.97 Aligned_cols=141 Identities=19% Similarity=0.183 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
..+.+++...+.|.+.++-.-..|...++..++ ...+ ++..+.+=|+++|+.+|-.|+..+..|=. .=.
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~-~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~------~el 124 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPE-LALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRV------KEL 124 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH-HHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcCh------HHH
Confidence 455666666677777777666677777776552 2122 36778888899999999999999887732 112
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 496 (627)
-..+++++.+.+.++++.+|..|+-+++++-.. .+....+.|.+..+..++.+.++.+..+|+.+|..+...
T Consensus 125 ~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 234689999999999999999999999998543 345556668899999999999999999999999988754
No 175
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.14 Score=58.39 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhc-CCchhhHHhhhh----CcHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHh
Q 006877 442 RENAAATLFSLS-VIDENKVAIGAA----GAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRF 515 (627)
Q Consensus 442 ~~~aa~~L~~Ls-~~~~~~~~i~~~----g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~l 515 (627)
...++.+|.|+. .+++....++.. |.++.+..++.. +++++++.|+..+.-++.+.+-...+++.|.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 456778888875 444555555543 788888888875 57889999999999999998888899999999999999
Q ss_pred hccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhcC
Q 006877 516 LKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 516 L~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~ 578 (627)
|.+ -+...+.++.+|..|+++++...+..+.|++..+..++.. .++..|..|+..|..|...
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 965 4677899999999999999888888888999999988875 5578888899999888763
No 176
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.84 E-value=0.035 Score=47.89 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=61.8
Q ss_pred cHhHHHHHHHHh-cCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 006877 340 DRAAIDALLGKL-ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL 411 (627)
Q Consensus 340 ~~~~i~~Lv~~L-~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nL 411 (627)
+-..+..|+..| .+.|+....-|+..|..+.+..+..|..+-+.|+-..++.++.++|++++.+|+.++-.+
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 346889999999 455677778899999999999999999999999999999999999999999999988665
No 177
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.82 E-value=0.035 Score=46.61 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHhhccC-CcchHHHhh
Q 006877 359 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSIN-DSNKGTIVN 423 (627)
Q Consensus 359 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~nLs~~-~~~k~~i~~ 423 (627)
+...++.|.+++..++.+...+.+.|+||.++..-.- .+|-+++.|++++.||..+ ++|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567889999999999999999999999999987644 5899999999999999875 677777764
No 178
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.0067 Score=57.57 Aligned_cols=53 Identities=15% Similarity=0.423 Sum_probs=45.3
Q ss_pred CCccCCCCcccccCcee----ccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCc
Q 006877 248 DDFRCPISLELMKDPVI----VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 301 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~----~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 301 (627)
..|.||+|.+.+.+.+- -+|||.+|..|.++.+. +...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 67999999999976542 38999999999999887 7788999999998887765
No 179
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.76 E-value=0.0079 Score=60.32 Aligned_cols=53 Identities=13% Similarity=0.345 Sum_probs=41.9
Q ss_pred CCCCccCCCCcccccC--ce-e-ccCcccccHHHHHHHHHhCCCCCCCccccccCCCCC
Q 006877 246 IPDDFRCPISLELMKD--PV-I-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT 300 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~d--Pv-~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~ 300 (627)
-...|.|||++..|.. +. . .+|||.|+..++.+.- ....||.|+.++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 4568999999999943 22 3 3999999999998873 356799999999877654
No 180
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.68 E-value=0.39 Score=47.22 Aligned_cols=192 Identities=16% Similarity=0.130 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHHhhhChhhHHHHHhc-CCHHHHHHHh-------cCCC--H---HHHHHHHHHHHhhccCCcchHHH
Q 006877 355 NVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELL-------SSTD--P---RTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 355 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL-------~~~~--~---~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
+++.+..|+.+|..--...++-.-.+-.. |.+..|++=+ ..+. . +-..+|+..|--++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778888777766543333333333333 6666665432 2221 2 23345666666778899999999
Q ss_pred hhcCChHHHHHHHccCC-----HHHHHHHHHHHHHhcCCc--hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 006877 422 VNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLS 494 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~-----~e~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~ 494 (627)
.++.+.--|.-+|+..+ +..|-.+.++++.|...+ +....+...+.+|..++.+..|+.-.+.-|.-++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 98886666666665542 557888999999997654 45566777899999999999999999999999999888
Q ss_pred cCCCchHHHHH--------cCChHHHHHhh-ccCChhhHHHHHHHHHHHhcChhhHHHHhh
Q 006877 495 IYQGNKARAVR--------AGIVPPLMRFL-KDAGGGMVDEALAILAILASHQEGKTAIGQ 546 (627)
Q Consensus 495 ~~~~~~~~l~~--------~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~ 546 (627)
.++.+-..+.. ..++..++.-+ .++++.+....+.+-..|+.++..+.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 87766554432 22344444433 457889999999999999999999887764
No 181
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.52 E-value=0.75 Score=47.39 Aligned_cols=189 Identities=21% Similarity=0.227 Sum_probs=112.0
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCCHHHHHHHHHHHHHhccC--C-CchH
Q 006877 427 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLSIY--Q-GNKA 501 (627)
Q Consensus 427 i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~-~~~~ 501 (627)
+...+..+...+...|+.++..+.++.........+... ..+..+.+.++.|..+-+..|+.++.-|+.. . ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 334445555566788888888888776544433444333 4677888888888766677777777776654 2 2333
Q ss_pred HHHHcCChHHHHHhhccCCh--hhHHHHHHHHHHHhcC----hhhHHHHhhCCChHHHH--HHHhc-C---------CHH
Q 006877 502 RAVRAGIVPPLMRFLKDAGG--GMVDEALAILAILASH----QEGKTAIGQAEPIPVLM--EVIRT-G---------SPR 563 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~--~~~~~Al~~L~~L~~~----~~~~~~i~~~g~v~~Lv--~lL~~-~---------~~~ 563 (627)
.++ ..+.|.|.+.+.+.+. .++..++.+|+.++.. ++...... ..+..+. ..++. + ++.
T Consensus 125 ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 333 4578889998877543 3334555566665542 11111111 1222111 11221 1 234
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 564 NRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 564 ~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+...|+..-.-|...-+. ...... ...++.|..++.+.+..+|..|.+.|..|-+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 666665444444433332 233332 3468999999999999999999999998854
No 182
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.52 E-value=1.2 Score=51.40 Aligned_cols=240 Identities=16% Similarity=0.153 Sum_probs=146.7
Q ss_pred HHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHc----cCC----HHHHHHH
Q 006877 379 CIAEAGAIPLLVELLSST-----DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK----NGS----MEARENA 445 (627)
Q Consensus 379 ~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~~----~e~~~~a 445 (627)
.+.+.|++..|+.++.+- +.......+.+|...++-..||..+.+.|+++.|++.|. .+. .++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 455679999999999762 344555566666666777899999999999999998885 323 5566666
Q ss_pred HHHHHHhcCCc---hhhHHhh----------hhCcHHHHHHHhccC----CHHHHHHHHHHHHHhccCCCchHHHHHcCC
Q 006877 446 AATLFSLSVID---ENKVAIG----------AAGAIPALIRLLCDG----TPRGKKDAATAIFNLSIYQGNKARAVRAGI 508 (627)
Q Consensus 446 a~~L~~Ls~~~---~~~~~i~----------~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~ 508 (627)
..++..|.... ....... ....+..|++.+.+. ++......+++|-+|+.........+-.-+
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 65555542211 1111111 113477777777764 578888899999999998766554332211
Q ss_pred hHHHHHh--hccCChhhHHHHHHHHHHHhc----Ch---hhHHHHhhCCChHHHHHHHhcC--------CHHHH------
Q 006877 509 VPPLMRF--LKDAGGGMVDEALAILAILAS----HQ---EGKTAIGQAEPIPVLMEVIRTG--------SPRNR------ 565 (627)
Q Consensus 509 v~~Lv~l--L~~~~~~~~~~Al~~L~~L~~----~~---~~~~~i~~~g~v~~Lv~lL~~~--------~~~~~------ 565 (627)
.+.+++ +......--...+..+..++. +. .-|..+++.|++...+.+|... +++.+
T Consensus 272 -~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 -KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred -HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 222221 111000001223444444444 22 2377888999999999988642 33333
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHHHHhH
Q 006877 566 --ENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQRI 620 (627)
Q Consensus 566 --~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~l~~~ 620 (627)
..+..+|.-||.+...... ++..++++.|-.|=+.. +..+-..|--+|..+.+.
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~-~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQL-LIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHH-HHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 3578888889998765444 45566776666664333 455666777777777653
No 183
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0082 Score=62.51 Aligned_cols=51 Identities=18% Similarity=0.496 Sum_probs=39.0
Q ss_pred CCCCccCCCCccccc-----------------CceeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 246 IPDDFRCPISLELMK-----------------DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~-----------------dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
+...--|+||+.... +-+.+||.|.|.+.|+++|.+.-.-.||+||.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 455567999986321 233469999999999999998555589999998863
No 184
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.004 Score=44.40 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=37.5
Q ss_pred ccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCccccc
Q 006877 250 FRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTL 294 (627)
Q Consensus 250 f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l 294 (627)
-.|.||.+-..|.|+-.|||. .|-.|=.+.+..++..||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 359999999999988899994 677887777776888999999754
No 185
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.43 E-value=0.72 Score=47.50 Aligned_cols=184 Identities=21% Similarity=0.270 Sum_probs=103.3
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCCcchHHHh--hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC---chhhHHhhhhC
Q 006877 392 LLSSTDPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI---DENKVAIGAAG 466 (627)
Q Consensus 392 lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~---~~~~~~i~~~g 466 (627)
.+.......|+.++..+.++....-....+. ....++.+.+.++.|..+-+..|+.++.-|+.. ......+.+ .
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~ 129 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-E 129 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-H
Confidence 3444456677777777776644322222222 234577888888888876667777777766544 122333333 4
Q ss_pred cHHHHHHHhccCC--HHHHHHHHHHHHHhccCCCc-hHHHHH-cCChHHHHH--hhcc----------CChhhHHHHHHH
Q 006877 467 AIPALIRLLCDGT--PRGKKDAATAIFNLSIYQGN-KARAVR-AGIVPPLMR--FLKD----------AGGGMVDEALAI 530 (627)
Q Consensus 467 ~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~-~~~l~~-~g~v~~Lv~--lL~~----------~~~~~~~~Al~~ 530 (627)
..|.|...+.+++ ...+..++.+|.-++....+ -..+.. ...+..+.. .+.. +++.++..|+..
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 6678888887764 44555556566655442111 111110 011111111 1111 134567777777
Q ss_pred HHHHhcChhh--HHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 531 LAILASHQEG--KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 531 L~~L~~~~~~--~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
-+.|...-+. ..... ...++.|..+|++.+..+|..|..+|.-|..
T Consensus 210 W~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7766664322 22222 3469999999999999999998877765543
No 186
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=1.4 Score=48.84 Aligned_cols=264 Identities=14% Similarity=0.140 Sum_probs=130.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCC--HHHHHHHHHHHHhhccCCcchH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD--PRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
..+..+...|.|.|+--+.-|+..+.++- +.+.+..+. .-|| ++|-+++ .-++..|+-+|+.|-...+ +
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp--D 181 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP--D 181 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc--c
Confidence 35666777788888888888888888875 333444333 2234 6776653 4466666767777644311 1
Q ss_pred HHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc--hhhHHhhhhCcHHHHHHHhcc-------------CCHHHHH
Q 006877 420 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCD-------------GTPRGKK 484 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~-------------~~~~~~~ 484 (627)
.+-..+.+..++++|.+.+..+...+...+.-|+... .++..+... +..|..+... +.+=...
T Consensus 182 l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~a--vs~L~riv~~~~t~~qdYTyy~vP~PWL~v 259 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLA--VSRLSRIVVVVGTSLQDYTYYFVPAPWLQV 259 (938)
T ss_pred ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHH--HHHHHHHHhhcccchhhceeecCCChHHHH
Confidence 1212356777888887766555555555555454332 222222211 1111111111 1222334
Q ss_pred HHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc--CCh-----hhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHH
Q 006877 485 DAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGG-----GMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI 557 (627)
Q Consensus 485 ~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~--~~~-----~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL 557 (627)
..+++|.+.-.-.++-.+..-..++..++..... .+. ..+...+.-.-+|+.+-+.-..+.. .++..|-.+|
T Consensus 260 Kl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fl 338 (938)
T KOG1077|consen 260 KLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLGQFL 338 (938)
T ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHh
Confidence 4455555542222211111111233333333331 011 1122223333344444333222221 3566777777
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhh-cCChHHHHHHHHHHHHHHhH
Q 006877 558 RTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 558 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~-~~~~~~k~~A~~lL~~l~~~ 620 (627)
.+....+|--|...+..||+..+ ....+... ...++..++ ..+..++++|..+|..|.+.
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred hcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 76666777777777777777643 22223322 444555555 44667777777777777653
No 187
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=1.1 Score=50.12 Aligned_cols=259 Identities=20% Similarity=0.174 Sum_probs=155.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Cc----
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DS---- 416 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~---- 416 (627)
...+++=..+.+....+..+|++.+..+...+.. .+. .++..|--+++++...+|-.|+.+|..+|.- +.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 3556666777777788899999999998754432 111 2778888889999999999999999998753 21
Q ss_pred -ch---HHHhhc---CChHHHHHHHccCCHHHHH----HHHHHHHHhcCCchhhHHhhh-------------hCcHHHHH
Q 006877 417 -NK---GTIVNA---GAIPDIVDVLKNGSMEARE----NAAATLFSLSVIDENKVAIGA-------------AGAIPALI 472 (627)
Q Consensus 417 -~k---~~i~~~---g~i~~Lv~lL~~~~~e~~~----~aa~~L~~Ls~~~~~~~~i~~-------------~g~i~~Lv 472 (627)
|+ ..|-.. -+-..+..+|+.|+..... ..+....++| ++++..+++ .+.+..|.
T Consensus 320 cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~ 397 (865)
T KOG1078|consen 320 CNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLS 397 (865)
T ss_pred cchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence 11 122211 1345677778887654433 3334444443 233332221 13444555
Q ss_pred HHhcc-CCHHHHHHHHHHHHHhcc-CCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCCh
Q 006877 473 RLLCD-GTPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPI 550 (627)
Q Consensus 473 ~lL~~-~~~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v 550 (627)
++|++ |..+.+.....++..+.. .++.+. .++..|..++.+ .+....+..+|..|-..... ...-...+
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~--a~~Pskyi 468 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIED--CEFTQIAVRILHLLGKEGPK--APNPSKYI 468 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHh--ccchHHHHHHHHHHhccCCC--CCCcchhh
Confidence 55544 334455555555554443 333332 234445555543 23345566666666542110 01112345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHH
Q 006877 551 PVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 551 ~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~ 621 (627)
..+...+.-.+..+|..|+.+|..+..+++. ....+...|...+.+.++.++..|...|+.+.+-+
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 5555555557888999999999998865542 22244556667888889999999999999998443
No 188
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.011 Score=60.60 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=40.7
Q ss_pred CCCCccCCCCcccccCce-----e---ccCcccccHHHHHHHHHhC------CCCCCCcccccc
Q 006877 246 IPDDFRCPISLELMKDPV-----I---VSTGQTYERSCIQKWLDAG------HKTCPKTQQTLL 295 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv-----~---~~cg~t~~r~ci~~~~~~~------~~~CP~~~~~l~ 295 (627)
.-.+..|-||++...+++ . .+|.|+||..||..|-... .+.||.||....
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 356899999999888877 3 4699999999999999533 378999997653
No 189
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.22 E-value=0.32 Score=48.09 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhh
Q 006877 523 MVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE 600 (627)
Q Consensus 523 ~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~ 600 (627)
....|+.+|.-+|- |+..+..+.+...+..++.+|.. ..+.++..++.+|..+...+|.+...+.+.+++..+..+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567788887777 88999999999999999999954 56889999999999999999999999999999999999998
Q ss_pred cC--ChHHHHHHHHHHHHH
Q 006877 601 SG--TDRAKRKAGSILELL 617 (627)
Q Consensus 601 ~~--~~~~k~~A~~lL~~l 617 (627)
+. +..++-|..+.|..+
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 76 677888888877755
No 190
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.10 E-value=1.1 Score=43.95 Aligned_cols=196 Identities=23% Similarity=0.271 Sum_probs=121.8
Q ss_pred hcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh
Q 006877 382 EAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 459 (627)
Q Consensus 382 ~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~ 459 (627)
...++|.|+..|... .+-+|..|..+|..+. + .+.++.+-+..+.+..++++.+..++..+--.+..-
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 346899999988764 5778889999998775 2 334455555555666777777777766652111000
Q ss_pred H-----Hh--------hhhCcHHHHHHHhccCCHH-H-HHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhH
Q 006877 460 V-----AI--------GAAGAIPALIRLLCDGTPR-G-KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMV 524 (627)
Q Consensus 460 ~-----~i--------~~~g~i~~Lv~lL~~~~~~-~-~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~ 524 (627)
. .. ...+-+..|-..|.+.+.. . +..|.-.|.|+-.. ..|..|.+-+..++.-.+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccchHHHH
Confidence 0 00 0112233333333332211 1 22233333333211 135566666666777778
Q ss_pred HHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC
Q 006877 525 DEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG 602 (627)
Q Consensus 525 ~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~ 602 (627)
..+..+++.|-+. -++|.|.+.|.. .++.+|..|+.+|..++... .++.|.+.+.+.
T Consensus 205 hEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-----------~~~vL~e~~~D~ 263 (289)
T KOG0567|consen 205 HEVAFVFGQLQSP----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED-----------CVEVLKEYLGDE 263 (289)
T ss_pred HHHHHHHhhccch----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-----------HHHHHHHHcCCc
Confidence 8888888877542 368899888864 56889999999999887643 566777788888
Q ss_pred ChHHHHHHHHHHHHHH
Q 006877 603 TDRAKRKAGSILELLQ 618 (627)
Q Consensus 603 ~~~~k~~A~~lL~~l~ 618 (627)
.+-+++.+.-+|.++.
T Consensus 264 ~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887764
No 191
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.07 E-value=0.27 Score=55.06 Aligned_cols=198 Identities=13% Similarity=0.094 Sum_probs=140.2
Q ss_pred cCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHH-HhcCCchhhHHhhhhCcHHHHHHHhccCC-HHHHHHHHHHH
Q 006877 413 INDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLF-SLSVIDENKVAIGAAGAIPALIRLLCDGT-PRGKKDAATAI 490 (627)
Q Consensus 413 ~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL 490 (627)
....-+...+..|+...|+++...+.++.+-....+|. .++...+ .....++++.+.+.+.. --....++.++
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 34445666778999999999999998888888888877 2221110 01145666666665533 22245689999
Q ss_pred HHhccCC-CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHH-Hhh-CCChHHHHHHHhcCCHHHHHH
Q 006877 491 FNLSIYQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA-IGQ-AEPIPVLMEVIRTGSPRNREN 567 (627)
Q Consensus 491 ~nL~~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~-i~~-~g~v~~Lv~lL~~~~~~~~~~ 567 (627)
.||+... ..+.++++.-.++.+-.++..+++..+..++..+.||..++..-.. +.+ ...++.....+.....+....
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 9998854 4667788887777777788888999999999999999998876433 444 356777777777656667777
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 568 AAAVLWAICTGDAEQLK-IARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 568 A~~~L~~L~~~~~~~~~-~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
++.++..+......++. ...-......+..++.++++.++.-.....-
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~l 695 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIIL 695 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhh
Confidence 77777777777766666 3333457788888899998888866554433
No 192
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.87 E-value=4.3 Score=44.12 Aligned_cols=225 Identities=13% Similarity=0.110 Sum_probs=140.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHc----cC-CHHHHHHHHHHHHHhcCCchhhHHhh
Q 006877 389 LVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK----NG-SMEARENAAATLFSLSVIDENKVAIG 463 (627)
Q Consensus 389 Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~ 463 (627)
..+-|.++.+..-..|..++..++.-+ ...|.-|.+++.+. .+ ....+..++.++.+.+........+.
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~ 172 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQ 172 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHH
Confidence 355677778888888888877775321 12344555555443 22 34578889999999988776655555
Q ss_pred hhCcH--HHHHHHhccC-CHHHHHHHHHHHHH-hccCCCchHHHHHcC-ChHHHHHhhccCChhhHHHHHHHHHHHhcC-
Q 006877 464 AAGAI--PALIRLLCDG-TPRGKKDAATAIFN-LSIYQGNKARAVRAG-IVPPLMRFLKDAGGGMVDEALAILAILASH- 537 (627)
Q Consensus 464 ~~g~i--~~Lv~lL~~~-~~~~~~~a~~aL~n-L~~~~~~~~~l~~~g-~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~- 537 (627)
.++++ .....-++++ +..++-.|+.+|.+ |-...+|-..--+.+ +.+...+.-..++.+++..|.++|..+..-
T Consensus 173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHH
Confidence 55433 3333445554 56778888999988 443333322222212 234445555668889999999999888762
Q ss_pred hhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHH----------------HcCcHHHHHHhhhc
Q 006877 538 QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR----------------ELDAEEALKELSES 601 (627)
Q Consensus 538 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~----------------~~g~i~~L~~l~~~ 601 (627)
-.--....+.-........+++.++++...|+..-..+|...-+.--... -..++|-|++|+.+
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 22222333333345556788899999999999988888875433221111 12378999999876
Q ss_pred C-------ChHHHHHHHHHHHHHHh
Q 006877 602 G-------TDRAKRKAGSILELLQR 619 (627)
Q Consensus 602 ~-------~~~~k~~A~~lL~~l~~ 619 (627)
. +=.....|..+|+++.+
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq 357 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQ 357 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHH
Confidence 2 12367788889988865
No 193
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.85 E-value=0.45 Score=51.02 Aligned_cols=155 Identities=18% Similarity=0.173 Sum_probs=118.4
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCH----HHHHHHHHHHHHhccCCCchH
Q 006877 426 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTP----RGKKDAATAIFNLSIYQGNKA 501 (627)
Q Consensus 426 ~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~nL~~~~~~~~ 501 (627)
....+++++.+|+...+..+...|..+|.+......+....++..|..++.+++. ......+.++..|-.+.-.-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567888999999988888999999999998888999999999999999998754 455566777776655443333
Q ss_pred HHHHcCChHHHHHhhcc--CChhhHHHHHHHHHHHhcChh-hHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 006877 502 RAVRAGIVPPLMRFLKD--AGGGMVDEALAILAILASHQE-GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~L~~~~~-~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~ 578 (627)
..+...+|.....+..- .+..+...|+..|.++..... -+..+.+.-.+..|+..++.++.+++..|.+.|-.+-..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 34444455555555422 455667889999999988655 566677777899999999999999998898888887765
Q ss_pred CH
Q 006877 579 DA 580 (627)
Q Consensus 579 ~~ 580 (627)
.+
T Consensus 244 a~ 245 (713)
T KOG2999|consen 244 AP 245 (713)
T ss_pred CC
Confidence 54
No 194
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.84 E-value=0.0093 Score=46.60 Aligned_cols=47 Identities=21% Similarity=0.555 Sum_probs=22.6
Q ss_pred CccCCCCccccc----Cceec----cCcccccHHHHHHHHHh--CC--------CCCCCcccccc
Q 006877 249 DFRCPISLELMK----DPVIV----STGQTYERSCIQKWLDA--GH--------KTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~----dPv~~----~cg~t~~r~ci~~~~~~--~~--------~~CP~~~~~l~ 295 (627)
+..|+||..... .|+.+ .|+++|...|+.+||.. +. ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998653 24432 58999999999999984 11 25999988764
No 195
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.78 E-value=0.028 Score=43.61 Aligned_cols=44 Identities=32% Similarity=0.670 Sum_probs=33.1
Q ss_pred cCCCCccccc----Ccee-ccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 251 RCPISLELMK----DPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 251 ~Cpic~~~m~----dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.||-|+--|. =|+. -.|.|.|.-.||++|++. ...||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 5777766442 2333 379999999999999995 567999998753
No 196
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.70 E-value=0.2 Score=41.94 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=55.7
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
..+++++..+...+.++|..|+.+|.+++.......-. .-..+...|..++.+.+++++..|..+-+.|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 47888999999999999999999999999865432221 22357888999999999999998877766654
No 197
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.69 E-value=0.15 Score=40.06 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHHHHhhCC
Q 006877 483 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAE 548 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g 548 (627)
.+.|++++.|++..+.+...+.+.++++.++++... +...++-.|..+|..++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 578999999999998888888888999999999865 667788899999999999999988877655
No 198
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.58 E-value=1.2 Score=47.15 Aligned_cols=243 Identities=16% Similarity=0.117 Sum_probs=137.2
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCH-HHHHHHHHHHHhhccCCcch
Q 006877 342 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDP-RTQEHAVTALLNLSINDSNK 418 (627)
Q Consensus 342 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~-~~~~~A~~~L~nLs~~~~~k 418 (627)
+.+..++..+.++ +...++.++-.|..-+. ++..|..+...|.+..+++.+.. ++. ..-..++.++.-++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 4677788888743 35678888888877775 78889999999999999999954 333 33444455555555555444
Q ss_pred HHHhhcCChHHHHHHHccC-----CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc---------CCHHHHH
Q 006877 419 GTIVNAGAIPDIVDVLKNG-----SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD---------GTPRGKK 484 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~-----~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~ 484 (627)
..+...+.+..++.++... ..+... ....+-.++.+ ..+..+...+.. .....+.
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~----------~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~ 168 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSDS----------SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQT 168 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchhh----------hhhhhhhHHHH-HHHHHHHHHHhccccccccCCccccccc
Confidence 4444566666667777611 000000 00000000000 111111112110 1122344
Q ss_pred HHHHHHHHhc------------c---CCCchHHHHHcCChHHHHHhhcc----C-------C-----hhhHHHHHHHHHH
Q 006877 485 DAATAIFNLS------------I---YQGNKARAVRAGIVPPLMRFLKD----A-------G-----GGMVDEALAILAI 533 (627)
Q Consensus 485 ~a~~aL~nL~------------~---~~~~~~~l~~~g~v~~Lv~lL~~----~-------~-----~~~~~~Al~~L~~ 533 (627)
.|+.++-.++ . .+--+..+.+.|++..++..+.+ . . ......++.+|.+
T Consensus 169 lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs 248 (361)
T PF07814_consen 169 LALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILES 248 (361)
T ss_pred HHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHH
Confidence 4555555553 0 11124456778889999988852 1 1 1234678888888
Q ss_pred HhcC-hhhHHHHhhC--CChHHHHHH-HhcC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHH
Q 006877 534 LASH-QEGKTAIGQA--EPIPVLMEV-IRTG---SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALK 596 (627)
Q Consensus 534 L~~~-~~~~~~i~~~--g~v~~Lv~l-L~~~---~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 596 (627)
.+.. .+++...... +.++.+... ++.- .......++.++.|++.++|+.+..+...++...+.
T Consensus 249 ~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~ 318 (361)
T PF07814_consen 249 VTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLG 318 (361)
T ss_pred HHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchH
Confidence 8874 4556555543 334344333 3322 234467899999999999988877776655444433
No 199
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.56 E-value=0.043 Score=39.48 Aligned_cols=41 Identities=22% Similarity=0.625 Sum_probs=31.7
Q ss_pred cCCCCcc--cccCceeccCc-----ccccHHHHHHHHHhC-CCCCCCcc
Q 006877 251 RCPISLE--LMKDPVIVSTG-----QTYERSCIQKWLDAG-HKTCPKTQ 291 (627)
Q Consensus 251 ~Cpic~~--~m~dPv~~~cg-----~t~~r~ci~~~~~~~-~~~CP~~~ 291 (627)
.|.||++ .-.+|.+.||. +-+.+.|+.+|+... ..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788886 44677778875 568899999999854 56899985
No 200
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.027 Score=55.28 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=38.6
Q ss_pred cCCCCcc-cccCcee----ccCcccccHHHHHHHHHhCCCCCCCccccccCCCC
Q 006877 251 RCPISLE-LMKDPVI----VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 299 (627)
Q Consensus 251 ~Cpic~~-~m~dPv~----~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 299 (627)
.||.|+. ...+|-. -+|||+.|.+|....|..|...||.|+..+-...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 5999973 4455543 28999999999999999999999999987754433
No 201
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.42 E-value=0.18 Score=42.23 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh--CCChHHHHHHHhcC
Q 006877 483 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRTG 560 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~--~g~v~~Lv~lL~~~ 560 (627)
++.++.+|...+..-.....-.-.-++++++..+.+.+..++..|+.+|.|++....+ .+.. ...+..|.+++...
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCC
Confidence 3455666666655433333333356899999999999999999999999999975433 3332 24678888888888
Q ss_pred CHHHHHHHHHHHHHH
Q 006877 561 SPRNRENAAAVLWAI 575 (627)
Q Consensus 561 ~~~~~~~A~~~L~~L 575 (627)
++.+|..| ..|-+|
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 88887766 555444
No 202
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.41 E-value=1.7 Score=40.77 Aligned_cols=92 Identities=23% Similarity=0.205 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCC-hHHHHHH
Q 006877 355 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGA-IPDIVDV 433 (627)
Q Consensus 355 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~-i~~Lv~l 433 (627)
++.++..++..+..|+...+..- ...+|.+...|+++++.+|..|+.+|..|...+--| -.|- +..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 46788899999999987554322 245789999999999999999999999997543211 1233 4788888
Q ss_pred HccCCHHHHHHHHHHHHHhcCC
Q 006877 434 LKNGSMEARENAAATLFSLSVI 455 (627)
Q Consensus 434 L~~~~~e~~~~aa~~L~~Ls~~ 455 (627)
+.+.+++++..|..++..++..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9899999999999999888765
No 203
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.027 Score=53.61 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=31.8
Q ss_pred CCCCccCCCCcccccCceeccCcccccHHHHHHHHH
Q 006877 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLD 281 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~ 281 (627)
+-+.-+|.+|++..+|||+++-||.|||.||.+++-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 444447899999999999999999999999999985
No 204
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.40 E-value=1.9 Score=44.71 Aligned_cols=156 Identities=19% Similarity=0.080 Sum_probs=119.9
Q ss_pred HhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC-CchH-----HHHHc--CChHHHHHhhccCChhhHHHHHHHHH
Q 006877 461 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-GNKA-----RAVRA--GIVPPLMRFLKDAGGGMVDEALAILA 532 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~~~~-----~l~~~--g~v~~Lv~lL~~~~~~~~~~Al~~L~ 532 (627)
.+...+.+..|+..|..-+-+.++++.....++.... +++. .+..+ .++..|+.-- +++++.-.+-.+|.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlR 148 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHH
Confidence 3555689999999999999999999999999998753 2322 22222 2333333333 46778888999999
Q ss_pred HHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---cHHHHHHhhhcCChHHHHH
Q 006877 533 ILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELD---AEEALKELSESGTDRAKRK 609 (627)
Q Consensus 533 ~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~l~~~~~~~~k~~ 609 (627)
.++.++.-...+.....+..+.++++.++-++-..|..++..+-...+..+......+ .......|+.+++-.+|+.
T Consensus 149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 9999988888888888999999999999999999999999997777777766666543 5667778999999999999
Q ss_pred HHHHHHHHH
Q 006877 610 AGSILELLQ 618 (627)
Q Consensus 610 A~~lL~~l~ 618 (627)
+..+|.-+-
T Consensus 229 slkLL~ell 237 (335)
T PF08569_consen 229 SLKLLGELL 237 (335)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999998763
No 205
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.7 Score=52.24 Aligned_cols=216 Identities=19% Similarity=0.175 Sum_probs=137.3
Q ss_pred cCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHH
Q 006877 394 SSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIR 473 (627)
Q Consensus 394 ~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 473 (627)
.++.+.++-.++..|..+.........+...+.+......|++.+.-+--+|...+..|+.. .....+|-|.+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e 809 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE 809 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence 33445577778888888887666666777888899999999988888888888877777654 22346677766
Q ss_pred -HhccC---CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh--HHHHhhC
Q 006877 474 -LLCDG---TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG--KTAIGQA 547 (627)
Q Consensus 474 -lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~--~~~i~~~ 547 (627)
..... .++.+...-.++.++....+.-..=..+-.+...+..+.+++...+..+++++++||.--.. ...+.
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-- 887 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-- 887 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--
Confidence 33322 12334444566666654322211111224566667777777777899999999999984332 22333
Q ss_pred CChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHc---CcHHHHHHhhhcC-ChHHHHHHHHHHHHHH
Q 006877 548 EPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIAREL---DAEEALKELSESG-TDRAKRKAGSILELLQ 618 (627)
Q Consensus 548 g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~---g~i~~L~~l~~~~-~~~~k~~A~~lL~~l~ 618 (627)
.++..++.+.+. +++-+|..|+-++..+-.+.+...-.+... .....+....... ++.++..|...+..+.
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 356666777765 568899999999988887665444333322 3344444444444 5556777777666553
No 206
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.36 E-value=0.66 Score=50.44 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=90.3
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCc----chHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh
Q 006877 383 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS----NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN 458 (627)
Q Consensus 383 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~----~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~ 458 (627)
.|.+|.|..+|++....++.+.+..+..++.+.. .|+.+. +--.|++.|++.+.+++.+|..++..+|..-..
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence 5899999999999999999999999998887632 234332 234578889999999999999888777532111
Q ss_pred hH------------------------Hhh-hh-CcHHHHHHHh---ccCCHHHHHHHHHHHHHhccCCCchHHHHHcCCh
Q 006877 459 KV------------------------AIG-AA-GAIPALIRLL---CDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIV 509 (627)
Q Consensus 459 ~~------------------------~i~-~~-g~i~~Lv~lL---~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v 509 (627)
.. .|+ +. |-+..|=.++ .+++..++.-.+.+++.+-.+-.+...=.-..+.
T Consensus 764 qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~it 843 (975)
T COG5181 764 QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSIT 843 (975)
T ss_pred HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 10 011 11 2222222222 2233344444455544444332222211112234
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcChhh
Q 006877 510 PPLMRFLKDAGGGMVDEALAILAILASHQEG 540 (627)
Q Consensus 510 ~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~ 540 (627)
|.|-+.|.+.++.-...|..++..|+-++.+
T Consensus 844 PlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 844 PLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 4455555666666666777777777766443
No 207
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=6.1 Score=44.04 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=143.3
Q ss_pred HHhcCCC--HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC--CcchHHHh-h
Q 006877 349 GKLANGN--VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN--DSNKGTIV-N 423 (627)
Q Consensus 349 ~~L~s~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~--~~~k~~i~-~ 423 (627)
+.|-|++ .-++..|+-+|..|-+.+++ .+-..+-+..++.+|...+..+...+...+.-|++. +..+..+. .
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~a 229 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLA 229 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHH
Confidence 4444443 34566666666666665543 122224578899999888877777777777777664 23333322 1
Q ss_pred cCChHHHHHHHcc----------CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccC--CHHHH----HHH-
Q 006877 424 AGAIPDIVDVLKN----------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG--TPRGK----KDA- 486 (627)
Q Consensus 424 ~g~i~~Lv~lL~~----------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~----~~a- 486 (627)
-+-+..++..-.. +.+-.....+++|.++-.-++.-....-...+..+++..+.. +.+++ ++|
T Consensus 230 vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naV 309 (938)
T KOG1077|consen 230 VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAV 309 (938)
T ss_pred HHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHH
Confidence 1222222222111 245677778888877733333322222224445555554432 11121 122
Q ss_pred HHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHH
Q 006877 487 ATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNR 565 (627)
Q Consensus 487 ~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~ 565 (627)
+--.-+|+.+-+.-..+. ..++..|-++|.+.+..++-.|+..+..|++......++... ...++..|+. .+..++
T Consensus 310 LFeaI~l~~h~D~e~~ll-~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSir 386 (938)
T KOG1077|consen 310 LFEAISLAIHLDSEPELL-SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIR 386 (938)
T ss_pred HHHHHHHHHHcCCcHHHH-HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHH
Confidence 222234444333222222 235778888999888899999999999999987666666654 7778888884 567899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHH
Q 006877 566 ENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRK 609 (627)
Q Consensus 566 ~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~ 609 (627)
..|+..|+.+|..+ +...++ .-|+..+.+.+...++.
T Consensus 387 rravDLLY~mcD~~--Nak~IV-----~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 387 RRAVDLLYAMCDVS--NAKQIV-----AELLQYLETADYSIREE 423 (938)
T ss_pred HHHHHHHHHHhchh--hHHHHH-----HHHHHHHhhcchHHHHH
Confidence 99999999999754 333333 33455555555555443
No 208
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.17 E-value=0.019 Score=64.35 Aligned_cols=50 Identities=18% Similarity=0.599 Sum_probs=36.9
Q ss_pred CCCCccCCCCccccc--C---ce--eccCcccccHHHHHHHHHh-CCCCCCCcccccc
Q 006877 246 IPDDFRCPISLELMK--D---PV--IVSTGQTYERSCIQKWLDA-GHKTCPKTQQTLL 295 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~--d---Pv--~~~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l~ 295 (627)
....-.|+||-.++. | |- ..+|.|.|...|+.+||+. ++.+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 334457999987664 2 22 2468899999999999996 5579999996553
No 209
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.035 Score=56.95 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=38.7
Q ss_pred CCCCccCCCCccccc---CceeccCcccccHHHHHHHHHhCC--CCCCCcc
Q 006877 246 IPDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGH--KTCPKTQ 291 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~---dPv~~~cg~t~~r~ci~~~~~~~~--~~CP~~~ 291 (627)
...-|.|||..+--. -|+.++|||..++..+.+....|. +.||.|-
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 345689999887654 577899999999999999998877 7899995
No 210
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.12 E-value=1.7 Score=48.94 Aligned_cols=240 Identities=16% Similarity=0.107 Sum_probs=157.2
Q ss_pred ChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHH-hhccCCcchHHHhhcCChHHHHHHHccCC-HHHHHHHHHHHH
Q 006877 373 NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALL-NLSINDSNKGTIVNAGAIPDIVDVLKNGS-MEARENAAATLF 450 (627)
Q Consensus 373 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~e~~~~aa~~L~ 450 (627)
...-|...+..|+...|.++.....+..+.++..+|. .+++..+. ....++++...+.... ..-...++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4445666778899999999998888888888778777 22221110 1233455555554432 223456778888
Q ss_pred HhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHH-HHH-cCChHHHHHhhccCChhhHHHH
Q 006877 451 SLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR-AVR-AGIVPPLMRFLKDAGGGMVDEA 527 (627)
Q Consensus 451 ~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~-l~~-~g~v~~Lv~lL~~~~~~~~~~A 527 (627)
||+..+ ..+..|...-+++.+-.++-..++..+..++..+.||..++.--.+ +++ ...++.....+...+......+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 887665 4566777776666666677778888999999999999988764443 444 4556666666655445555555
Q ss_pred HHHHHHHhcChhh-HHHHhh-CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChH
Q 006877 528 LAILAILASHQEG-KTAIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDR 605 (627)
Q Consensus 528 l~~L~~L~~~~~~-~~~i~~-~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~ 605 (627)
.+++..+....++ ...+.+ ......++.++.++++.++...+.+.+++.....+....+.....++.+..+-.-.-..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhh
Confidence 6666645553333 221322 35788889999999999999999888887777767777777777777666655444444
Q ss_pred HHHHHHHHHHHH
Q 006877 606 AKRKAGSILELL 617 (627)
Q Consensus 606 ~k~~A~~lL~~l 617 (627)
.++.|...|...
T Consensus 728 ~~~~~~~~l~~a 739 (748)
T KOG4151|consen 728 KREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhHHHHH
Confidence 455555555433
No 211
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.025 Score=43.55 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=33.8
Q ss_pred CCccCCCCcccccC-ceec-cCcccccHHHHHHHHHh--CCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKD-PVIV-STGQTYERSCIQKWLDA--GHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~d-Pv~~-~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~ 295 (627)
=+-.||-|.-.=.| |.+. .|.|.|-..||.+|+.. ....||+||+...
T Consensus 30 Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 30 FDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34466666554433 3233 79999999999999985 3468999998653
No 212
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.02 E-value=1.6 Score=41.78 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHH---ccCC--HHHHHHHHHHHHHhcCCch--hhHHhhhhCcHHHHH
Q 006877 400 TQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL---KNGS--MEARENAAATLFSLSVIDE--NKVAIGAAGAIPALI 472 (627)
Q Consensus 400 ~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL---~~~~--~e~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv 472 (627)
-..+|+.+|--++.+++.|..+.++.+---+-..| ++.+ +-.+-.+..++..|..+++ ....+....++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 34567777777788999998888765332333333 3322 4578889999999987763 344556669999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhccCCCchHHHHH--------cCChHHHHHhhc-cCChhhHHHHHHHHHHHhcChhhHHH
Q 006877 473 RLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR--------AGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTA 543 (627)
Q Consensus 473 ~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~--------~g~v~~Lv~lL~-~~~~~~~~~Al~~L~~L~~~~~~~~~ 543 (627)
+++..|+.-.+.-|+.++..+..++.+-..+.+ ..++..++..+. .+...+...++.+-..||..+..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 999999988888888888888777766554432 223444444443 36778889999999999999988877
Q ss_pred Hh
Q 006877 544 IG 545 (627)
Q Consensus 544 i~ 545 (627)
+.
T Consensus 276 L~ 277 (315)
T COG5209 276 LS 277 (315)
T ss_pred Hh
Confidence 65
No 213
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.00 E-value=0.023 Score=57.66 Aligned_cols=47 Identities=32% Similarity=0.511 Sum_probs=39.7
Q ss_pred cCCCCcccccCceeccCcccccHHHHHHHHHhC-CCCCCCccccccCC
Q 006877 251 RCPISLELMKDPVIVSTGQTYERSCIQKWLDAG-HKTCPKTQQTLLHT 297 (627)
Q Consensus 251 ~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~-~~~CP~~~~~l~~~ 297 (627)
.|-||-+-=+|--+-+|||-.|-.|+..|.... ..+||.||..+.-+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 599999988887677999999999999999654 78999999776543
No 214
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=4.9 Score=45.34 Aligned_cols=209 Identities=18% Similarity=0.140 Sum_probs=135.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhh
Q 006877 344 IDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423 (627)
Q Consensus 344 i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~ 423 (627)
-..|..+|.|.......+|.+.|-.+-....+ -....|..|+-..+.|.+++.-.---|..-|....+-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 35688999988888888998865554433333 1245688999999999999887665565556543332221
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC-CchHH
Q 006877 424 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-GNKAR 502 (627)
Q Consensus 424 ~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~~~~~ 502 (627)
-|..+-+-|+++++.+|..|+++|..+-.. ++..=.+-.+-+...+.++-+++.|+.||-.|=.-+ +.+..
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 367788889999999999998888765321 221112222334445567899999999998886644 33433
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 503 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 503 l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
+ +..+-.+|.+.++.++-.|+.+...+|-+ .-..+. +-...|..+|-.-+...|-.....|..-|+
T Consensus 181 L-----~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred H-----HHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 3 34566677888899998898888887742 222222 335666666655555566666665555443
No 215
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.91 E-value=0.39 Score=45.45 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=74.1
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc--hHHHHHcCChHHHHHhhcc---------CChhhHHHHHHHHHHHh
Q 006877 467 AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN--KARAVRAGIVPPLMRFLKD---------AGGGMVDEALAILAILA 535 (627)
Q Consensus 467 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~--~~~l~~~g~v~~Lv~lL~~---------~~~~~~~~Al~~L~~L~ 535 (627)
....+++.+.++.... ..+.-|.-....... ...+++.||+..|+.+|.. .+......++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4455666666554322 222222211122221 3367788999999998854 22356788999999999
Q ss_pred cChhhHHHHhhC-CChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 536 SHQEGKTAIGQA-EPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 536 ~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
.+..|...++.. +++..|+..|.+.+..++..|..+|..+|.
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALCL 187 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence 999999988874 789999999999999999999999999983
No 216
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.03 Score=57.34 Aligned_cols=61 Identities=25% Similarity=0.575 Sum_probs=46.6
Q ss_pred CccCCCCcccccCce-----eccCcccccHHHHHHHHHhC-CCCCCCccccccCCCCCccHHHHhhh
Q 006877 249 DFRCPISLELMKDPV-----IVSTGQTYERSCIQKWLDAG-HKTCPKTQQTLLHTALTPNYVLKSLI 309 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv-----~~~cg~t~~r~ci~~~~~~~-~~~CP~~~~~l~~~~l~~n~~l~~~i 309 (627)
..+||||++-..-|+ ++.|||-|-..||++|+... ...||.|..+.....+.+-+.+|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 458999998766553 46899999999999999532 25799998877777777777666543
No 217
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.76 E-value=0.4 Score=44.06 Aligned_cols=145 Identities=18% Similarity=0.135 Sum_probs=98.6
Q ss_pred CChHHHHHHHcc--CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC-chH
Q 006877 425 GAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKA 501 (627)
Q Consensus 425 g~i~~Lv~lL~~--~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~ 501 (627)
..++.++..|.. ..++++..+.-++..+- +..+....+ -.-..+-.++..++.+....++.++..|-..+. -..
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345666666654 46788888888887772 333333222 222333334444445577778888888776544 334
Q ss_pred HHH-HcCChHHHHHhhc--cCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHH-HHHHHHHHHH
Q 006877 502 RAV-RAGIVPPLMRFLK--DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPR-NRENAAAVLW 573 (627)
Q Consensus 502 ~l~-~~g~v~~Lv~lL~--~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~-~~~~A~~~L~ 573 (627)
.+. ..|+++.++.++. ..+..++..++.+|..-|.+...|..+.+. +++.|-.+++. .++. +|..|+-+|.
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHh
Confidence 444 6799999999998 678888999999999999998888888764 79999999964 4555 6777776664
No 218
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.76 E-value=1 Score=48.37 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=116.7
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCC----hhhHHHHHHHHHHHhcChhhHH
Q 006877 467 AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAG----GGMVDEALAILAILASHQEGKT 542 (627)
Q Consensus 467 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~----~~~~~~Al~~L~~L~~~~~~~~ 542 (627)
....+.+++.+++...+..|+..|..|+.+..-...++...++..|..++.++. ..+...++.++..+..+.-..=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 456788889999988988899999999999888889999999999999998744 3455566666666665543111
Q ss_pred HHhhCCChHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 543 AIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 543 ~i~~~g~v~~Lv~lL~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
......+|.....+..- -...+-..|..+|-++..+++...+.+.++--++.|+..++.++.+.+.+|..++..|-
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11223345555555532 23446788999999999999888888999999999999999999999999998887663
No 219
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.04 Score=55.11 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=40.3
Q ss_pred CCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
++-.||||---....|+.||||.-|..||.+++- +.+.|-.|.....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 6789999988888889999999999999999997 6677888875443
No 220
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.48 E-value=4.7 Score=42.88 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=99.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCch----hhHHhhhhCcHHHHHHHhccCC------HHH-HHHHHHHHHHhccCCC
Q 006877 430 IVDVLKNGSMEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDGT------PRG-KKDAATAIFNLSIYQG 498 (627)
Q Consensus 430 Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~~------~~~-~~~a~~aL~nL~~~~~ 498 (627)
+..+++..+.+-+-.|.-....+..+++ +|..+.+.-+++.+-+++.+++ +.+ +..++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4455555555555555555556655543 6777888877788888887642 223 4456778888898876
Q ss_pred chH--HHHHcCChHHHHHhhcc-CChh------hHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC-HHHHHHH
Q 006877 499 NKA--RAVRAGIVPPLMRFLKD-AGGG------MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENA 568 (627)
Q Consensus 499 ~~~--~l~~~g~v~~Lv~lL~~-~~~~------~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~A 568 (627)
-.. .++ +.||.|++++.. .+++ +.+.+-.+|..+++++.|...++..|+++.+..+-...+ ..-..-|
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 433 444 568999999965 3333 889999999999999999999999999999987654333 2234445
Q ss_pred HHHHHHHhc
Q 006877 569 AAVLWAICT 577 (627)
Q Consensus 569 ~~~L~~L~~ 577 (627)
..++.-+..
T Consensus 174 l~Vlll~~~ 182 (698)
T KOG2611|consen 174 LKVLLLLVS 182 (698)
T ss_pred HHHHHHHHH
Confidence 555544443
No 221
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.44 E-value=1 Score=46.21 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=109.7
Q ss_pred CCHHHHH-HHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh--hH
Q 006877 384 GAIPLLV-ELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN--KV 460 (627)
Q Consensus 384 g~i~~Lv-~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~--~~ 460 (627)
+.+..|+ .-++++++.+|+.|+.+|+-.+.-+. .++ ...++.+...+..++.+++..|+.+++.+...... -.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 3444444 56788999999999999998876433 222 22477788888888999999999999998644321 11
Q ss_pred H-------hhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc----CChhhHHHHHH
Q 006877 461 A-------IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD----AGGGMVDEALA 529 (627)
Q Consensus 461 ~-------i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~----~~~~~~~~Al~ 529 (627)
. ......+..+.+.+.+.+++++..|+..++.|-....... ...++..|+-+-.+ .+..++..--.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 1 2223677888888988899999999999998876543332 13344455544444 22344443444
Q ss_pred HHHHHhcChhhHHHHhhCCChHHHHHHHhc
Q 006877 530 ILAILASHQEGKTAIGQAEPIPVLMEVIRT 559 (627)
Q Consensus 530 ~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~ 559 (627)
.+-..+......+..+...+++.+-.+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 445666644433444445577777777764
No 222
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.44 E-value=0.037 Score=40.12 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=35.9
Q ss_pred CCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
.+..|-.|...-...++++|||..|+.|..-+ ...-||.|+.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 34557777777778888999999999985433 456799999888643
No 223
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.30 E-value=1.6 Score=49.65 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=141.6
Q ss_pred CCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHhhhh---CcHHHH
Q 006877 396 TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAA---GAIPAL 471 (627)
Q Consensus 396 ~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~---g~i~~L 471 (627)
..|...-.|.+++...+.....-..+.. -.+...+..+. +..+.++..|+++++.-+ +...... +++..|
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILDGL 535 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHHHH
Confidence 4555555667766654432111111111 12223333332 234556777777776554 2222222 778888
Q ss_pred HHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhc--cCChhhHHHHHHHHHHHhcChhhHHHHhhCCC
Q 006877 472 IRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLK--DAGGGMVDEALAILAILASHQEGKTAIGQAEP 549 (627)
Q Consensus 472 v~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~--~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~ 549 (627)
+.+....+.++.-....+|+-.+..+.......++-+.|-...++. +.++.+...+-.++..|+....+..-+. ...
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHH
Confidence 8888777888888888999999998887777777778887777763 3778888888888888887554443333 247
Q ss_pred hHHHHHHHhcCC----HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHh-hhcCChHHHHHHHHHHHHHHh
Q 006877 550 IPVLMEVIRTGS----PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKEL-SESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 550 v~~Lv~lL~~~~----~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+|.++..|+.+. +.....|+.+|..+.++.|.-.....-.-+.|++.++ +.+++...-..|.++|+-+-.
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 999999998654 4566778888888888877544333333467777776 455677778889999987743
No 224
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.28 E-value=0.061 Score=38.12 Aligned_cols=43 Identities=23% Similarity=0.459 Sum_probs=22.1
Q ss_pred CCCCcccc--cCceec--cCcccccHHHHHHHHHhCCCCCCCccccc
Q 006877 252 CPISLELM--KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTL 294 (627)
Q Consensus 252 Cpic~~~m--~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l 294 (627)
||+|.+.| +|--.. +||..+|+.|..+....++..||.|+.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78998877 232233 68999999998887766678899999753
No 225
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.16 E-value=3.4 Score=38.81 Aligned_cols=92 Identities=26% Similarity=0.351 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcH-HHHHHHh
Q 006877 397 DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAI-PALIRLL 475 (627)
Q Consensus 397 ~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i-~~Lv~lL 475 (627)
|+.+|.+++.+++-|+..-+ .++ ...++.+...|+++++.+|..|+.+|..|...+..+.. |.+ ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 57899999999999976422 222 23578899999999999999999999999765532221 333 7778888
Q ss_pred ccCCHHHHHHHHHHHHHhccC
Q 006877 476 CDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 476 ~~~~~~~~~~a~~aL~nL~~~ 496 (627)
.+.+++++..|...+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999998875
No 226
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.15 E-value=5.7 Score=42.15 Aligned_cols=220 Identities=12% Similarity=0.110 Sum_probs=134.6
Q ss_pred HHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC----CcchHHHh--------hcCChH
Q 006877 361 AAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN----DSNKGTIV--------NAGAIP 428 (627)
Q Consensus 361 ~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~----~~~k~~i~--------~~g~i~ 428 (627)
.|++.|-.+....+..-..+.+.|++..++..|...-....+. -.+-..+ ++.+.... +.+.++
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK 78 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE----NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLK 78 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----ccccCCCCCCCCCcccccccccccCHHHHHHHH
Confidence 4667777777666677778889999999999986531111110 0011000 11111111 122233
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcC-Cc---hhhHHhhh-hCcHHHHHHHhccCC---HHHHHHHHHHHHHhccCCCc-
Q 006877 429 DIVDVLKNGSMEARENAAATLFSLSV-ID---ENKVAIGA-AGAIPALIRLLCDGT---PRGKKDAATAIFNLSIYQGN- 499 (627)
Q Consensus 429 ~Lv~lL~~~~~e~~~~aa~~L~~Ls~-~~---~~~~~i~~-~g~i~~Lv~lL~~~~---~~~~~~a~~aL~nL~~~~~~- 499 (627)
.++++ +..+.. .. +.-..+.+ ...+..|..++.+.. ..+.-.|+..+..+..+++.
T Consensus 79 ~lLk~---------------l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~ 143 (379)
T PF06025_consen 79 SLLKF---------------LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS 143 (379)
T ss_pred HHHHH---------------HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch
Confidence 33333 222222 11 12222334 345566777777653 56778889999998886654
Q ss_pred hHHHHHcCChHHHHHhhc-c---CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHH--HH-----HHH
Q 006877 500 KARAVRAGIVPPLMRFLK-D---AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPR--NR-----ENA 568 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~-~---~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~--~~-----~~A 568 (627)
-..+.++|+++.+++.+. . ++.++....-.+|..||-+..|.+.+.+.+.++.+++++.+...- .+ ..-
T Consensus 144 ~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~l 223 (379)
T PF06025_consen 144 FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNL 223 (379)
T ss_pred hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHH
Confidence 456778999999999987 4 566777777788899999999999999999999999999764311 11 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhh
Q 006877 569 AAVLWAICTGDAEQLKIARELDAEEALKELSE 600 (627)
Q Consensus 569 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~ 600 (627)
-..+-.|.++.|.-+..+++. ++..+-++..
T Consensus 224 G~~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~~ 254 (379)
T PF06025_consen 224 GNSFDELMRHHPSLKPDIIDA-IIKILDRLVE 254 (379)
T ss_pred HHHHHHHHccCHHHHHHHHHH-HHHHHHHHHH
Confidence 344556888888766655553 3444444433
No 227
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=93.04 E-value=0.077 Score=51.32 Aligned_cols=45 Identities=31% Similarity=0.428 Sum_probs=37.3
Q ss_pred CccCCCCcccccCcee-ccCcccccHHHHHHHHHh-CCCCCCCcccc
Q 006877 249 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDA-GHKTCPKTQQT 293 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~-~~cg~t~~r~ci~~~~~~-~~~~CP~~~~~ 293 (627)
+++||++......|++ ..|||.|+|..|+.++.. ....||+-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 6899999999999998 589999999999998873 13569985543
No 228
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.79 E-value=0.025 Score=62.18 Aligned_cols=48 Identities=21% Similarity=0.465 Sum_probs=39.1
Q ss_pred CCccCCCCcccccCcee---ccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 248 DDFRCPISLELMKDPVI---VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~---~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
..-.||+|..-+.|--+ .+|+|-||..||..|.. ...+||.|+..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 44679999887776654 47999999999999987 66789999987754
No 229
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.67 E-value=5.8 Score=45.43 Aligned_cols=230 Identities=15% Similarity=0.122 Sum_probs=144.6
Q ss_pred CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCcchHHHh--hcCChHHH
Q 006877 354 GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPDI 430 (627)
Q Consensus 354 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~~~k~~i~--~~g~i~~L 430 (627)
..|.....+.+.+...+.....+...+- -+....+..+.-+ .+-++..|+.+++..++ ...+. .+++++.|
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDGL 535 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHHH
Confidence 3455555777777766653222222211 1222333434333 44566666776666552 12222 46788888
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc--CCHHHHHHHHHHHHHhccCCCchHHHHHcCC
Q 006877 431 VDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD--GTPRGKKDAATAIFNLSIYQGNKARAVRAGI 508 (627)
Q Consensus 431 v~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~ 508 (627)
+++....+.++......+|...+..+.-.....++...|.++.++-. .++.+...+-.++..|+....+...+. .-.
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHH
Confidence 88888778888888888888887777666666666777877777643 467666666666667766333333332 347
Q ss_pred hHHHHHhhccCC----hhhHHHHHHHHHHHhcC-hhh-HHHHhhCCChHHHHHHH-hcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 509 VPPLMRFLKDAG----GGMVDEALAILAILASH-QEG-KTAIGQAEPIPVLMEVI-RTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 509 v~~Lv~lL~~~~----~~~~~~Al~~L~~L~~~-~~~-~~~i~~~g~v~~Lv~lL-~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
||.++..|..+. ..+..-|+.+|..+.++ +.. -+.+. .-++|.+.+.. ++++..+-.++-.+|..+.+.+.+
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 999999997755 66778888888877774 222 22233 23677777655 567788889999999998888776
Q ss_pred HHHHHHHcCc
Q 006877 582 QLKIARELDA 591 (627)
Q Consensus 582 ~~~~~~~~g~ 591 (627)
....-...++
T Consensus 694 q~~t~~~e~g 703 (1005)
T KOG2274|consen 694 QLLTWHDEPG 703 (1005)
T ss_pred HHHhhccCCC
Confidence 5554444433
No 230
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.61 E-value=0.29 Score=42.27 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=58.9
Q ss_pred ChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 549 PIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 549 ~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
.+..|+.+|.. .++.+..-|+.=|..++...|..+..+.+.|+-..++.|+.+++++++..|..+++-+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 57889999954 45667778888999999999999998889999999999999999999999999988664
No 231
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=3.8 Score=48.28 Aligned_cols=221 Identities=16% Similarity=0.200 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhChhhHHHHHhc--CCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-C-cchHHHhhcCChH
Q 006877 353 NGNVEEQRAAAGELRLLAKRNADNRVCIAEA--GAIPLLVELLSSTDPRTQEHAVTALLNLSIN-D-SNKGTIVNAGAIP 428 (627)
Q Consensus 353 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~-~~k~~i~~~g~i~ 428 (627)
+.+..+|.++-+.|..++.. +.......+. ..-..|.+-+++.+...+..++.+|..|-.. + +....+ ...|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 34688999999999999864 2222222211 1233444455555666777777777766442 2 222222 22355
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcC----CchhhHHhhhhCcHHHHHHHhccC--CHHHHHHH--HHHHHHhccCCCch
Q 006877 429 DIVDVLKNGSMEARENAAATLFSLSV----IDENKVAIGAAGAIPALIRLLCDG--TPRGKKDA--ATAIFNLSIYQGNK 500 (627)
Q Consensus 429 ~Lv~lL~~~~~e~~~~aa~~L~~Ls~----~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a--~~aL~nL~~~~~~~ 500 (627)
.++-.++.-+...+.+|..+|..+.. .++.... ....+..++..+..+ .......+ +.++..+.....+.
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 55545567788899999999988862 1111111 112555555555544 12222222 44444444322211
Q ss_pred H-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 006877 501 A-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 501 ~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~ 578 (627)
. ...=.+.+..+..+|.++++++...|++.+..++.. |+..-.-.....++.++.+++.....++..+-..|-.|+..
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 1 112234455566667779999999999999999884 44332222234688888888888888888888888777764
No 232
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.59 E-value=4.8 Score=41.25 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=111.0
Q ss_pred hHHHHHH-HHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC--Ccch
Q 006877 342 AAIDALL-GKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN--DSNK 418 (627)
Q Consensus 342 ~~i~~Lv-~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~--~~~k 418 (627)
+.+..++ ..+.+.++.++..|+++|...+--+.+.. ...++.+...+..++..++..|+.++..+... ...-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3444444 67788899999999999999886444221 12367788888778999999999999987532 1111
Q ss_pred -------HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccC---CHHHHHHHHH
Q 006877 419 -------GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG---TPRGKKDAAT 488 (627)
Q Consensus 419 -------~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~ 488 (627)
........++.+.+.|.+.+++++..|+..+..|-..+.... ....+..|+-+--++ +..-.+.++.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 112234567788888889999999999999988865543222 134455554443332 2223445555
Q ss_pred HHH-HhccCCCchHHHHHcCChHHHHHhhcc
Q 006877 489 AIF-NLSIYQGNKARAVRAGIVPPLMRFLKD 518 (627)
Q Consensus 489 aL~-nL~~~~~~~~~l~~~g~v~~Lv~lL~~ 518 (627)
..+ ..+.........+...+++.+..+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 444 566666656677777788887777754
No 233
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.55 E-value=24 Score=41.13 Aligned_cols=238 Identities=16% Similarity=0.163 Sum_probs=134.8
Q ss_pred ccHhHHHHHHHHhcCC-----CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhc----CCC----HHHHHHHH
Q 006877 339 CDRAAIDALLGKLANG-----NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS----STD----PRTQEHAV 405 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~-----~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----~~~----~~~~~~A~ 405 (627)
++-+++..++..+.+. ..+.....++.|+..++ -..||..+.+.|+++.|+..|. .+. ..+-+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 3456788888888652 23344445555555665 6889999999999999998884 333 56666666
Q ss_pred HHHHhhccCCcc------hHHHhhcC-------ChHHHHHHHccC----CHHHHHHHHHHHHHhcCCchhhHHhhhhCcH
Q 006877 406 TALLNLSINDSN------KGTIVNAG-------AIPDIVDVLKNG----SMEARENAAATLFSLSVIDENKVAIGAAGAI 468 (627)
Q Consensus 406 ~~L~nLs~~~~~------k~~i~~~g-------~i~~Lv~lL~~~----~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i 468 (627)
.++..|..+... .......| -+..+++.+.+. ++.+....+++|-+|+..+..+....-. .+
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~-~F 271 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE-HF 271 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH-HH
Confidence 666655432111 01111111 255566666543 5778889999999998876443322221 22
Q ss_pred HHHHHHhccC---CHHHHHHHHHHHHHhcc----CC---CchHHHHHcCChHHHHHhhccCC--------hhh-------
Q 006877 469 PALIRLLCDG---TPRGKKDAATAIFNLSI----YQ---GNKARAVRAGIVPPLMRFLKDAG--------GGM------- 523 (627)
Q Consensus 469 ~~Lv~lL~~~---~~~~~~~a~~aL~nL~~----~~---~~~~~l~~~g~v~~Lv~lL~~~~--------~~~------- 523 (627)
.+.+++=.-+ .++. ...+..++.++. +. .-+..+++.|++...++.|...- ++.
T Consensus 272 ~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 3332321111 1111 122444444443 22 12446889999998888886522 223
Q ss_pred -HHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC-CHHHHHHHHHHHHHHhcCC
Q 006877 524 -VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 524 -~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~A~~~L~~L~~~~ 579 (627)
...++.+|.-|+......+.++..++++.+-.+=+.. ...+-..|=.+|-.|+.+.
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 3467888888888655444455556664333333333 2445556666666666644
No 234
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.53 E-value=0.77 Score=43.36 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=80.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhh-HHHHHhcCCHHHHHHHhcC---------CCHHHHHHHHHHHHhh
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN-RVCIAEAGAIPLLVELLSS---------TDPRTQEHAVTALLNL 411 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~-r~~i~~~g~i~~Lv~lL~~---------~~~~~~~~A~~~L~nL 411 (627)
.....++..+.+..... +.+..|+.....++.. -..|++.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 46677888887765432 5566666655555444 3457788999999998853 3557888899999999
Q ss_pred ccCCcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhc
Q 006877 412 SINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLS 453 (627)
Q Consensus 412 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls 453 (627)
..+..+...++ ..+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 87777777777 5889999999999999999999999988765
No 235
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=3.3 Score=46.65 Aligned_cols=208 Identities=16% Similarity=0.119 Sum_probs=124.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
.-.++..-..|.|.++.+...+++....++-.+ -...++.+|+++|++ +..+|...+..+..++.-
T Consensus 286 ~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~------ 351 (968)
T KOG1060|consen 286 KLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIK------ 351 (968)
T ss_pred HHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhc------
Confidence 345555566777889999999999999988432 112457899999877 556677666666666542
Q ss_pred HhhcCChHHHHHHH--c-cCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 421 IVNAGAIPDIVDVL--K-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 421 i~~~g~i~~Lv~lL--~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
..+.+.+-++-+ . ++...++..=+.+|.+|+.... .. ..++-|-..+++.+.+....++.+|+..+..-
T Consensus 352 --~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn-i~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~ 423 (968)
T KOG1060|consen 352 --RPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESN-IS-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRI 423 (968)
T ss_pred --chhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc-HH-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh
Confidence 233333333221 1 2223444445566666654321 11 23445555666666666666666666555321
Q ss_pred CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC-HHHHHHHHHHHHHHh
Q 006877 498 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLWAIC 576 (627)
Q Consensus 498 ~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~A~~~L~~L~ 576 (627)
.-+...++..|+.+|.+.+..++..++-++..|......+. ...+..|.+++++-. +..|...+|.+...|
T Consensus 424 ----~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h----~~ii~~La~lldti~vp~ARA~IiWLige~~ 495 (968)
T KOG1060|consen 424 ----GSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH----LEILFQLARLLDTILVPAARAGIIWLIGEYC 495 (968)
T ss_pred ----CchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH----HHHHHHHHHHhhhhhhhhhhceeeeeehhhh
Confidence 12344577889999998888899999999988877543221 124566777775432 445555555555555
Q ss_pred cC
Q 006877 577 TG 578 (627)
Q Consensus 577 ~~ 578 (627)
..
T Consensus 496 e~ 497 (968)
T KOG1060|consen 496 EI 497 (968)
T ss_pred hh
Confidence 43
No 236
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.34 E-value=0.088 Score=52.41 Aligned_cols=50 Identities=20% Similarity=0.453 Sum_probs=36.0
Q ss_pred CCccCCCCccccc--Ccee--ccCcccccHHHHHHHHHhCCCCCCCccccccCCC
Q 006877 248 DDFRCPISLELMK--DPVI--VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 298 (627)
Q Consensus 248 ~~f~Cpic~~~m~--dPv~--~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 298 (627)
+++ ||+|.+.|. |--. -+||...|+.|....-..-+..||.||.......
T Consensus 14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 344 999999884 3333 3688888998876655545678999998776554
No 237
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.34 E-value=1.2 Score=44.03 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhcc-CCcchHHHhhcCChHHHHHHHc
Q 006877 358 EQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLK 435 (627)
Q Consensus 358 ~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~ 435 (627)
....|++.|.-++--++..|..+.+...+..|+.+|.. ..+.++..++.+|..+-. ++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567888888888788999999999999999999944 578999999998888754 5778888888999999999998
Q ss_pred cC--CHHHHHHHHHHHH-Hhc
Q 006877 436 NG--SMEARENAAATLF-SLS 453 (627)
Q Consensus 436 ~~--~~e~~~~aa~~L~-~Ls 453 (627)
+. +.+++-.++..|+ +|.
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 75 5778888887774 443
No 238
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.21 E-value=0.037 Score=62.49 Aligned_cols=47 Identities=19% Similarity=0.471 Sum_probs=39.4
Q ss_pred ccCCCCcccccCceeccCcccccHHHHHHHHHhCC-CCCCCccccccCC
Q 006877 250 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGH-KTCPKTQQTLLHT 297 (627)
Q Consensus 250 f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~-~~CP~~~~~l~~~ 297 (627)
+.|++|.+ ..+|+++.|||.||+.|+...+...+ ..||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 89999999 88899999999999999999887543 3599998665433
No 239
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.02 E-value=0.25 Score=31.65 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 006877 386 IPLLVELLSSTDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 386 i~~Lv~lL~~~~~~~~~~A~~~L~nLs~ 413 (627)
+|.++++++++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998864
No 240
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.92 E-value=3.4 Score=48.75 Aligned_cols=229 Identities=16% Similarity=0.110 Sum_probs=134.2
Q ss_pred CHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-C---chhh
Q 006877 385 AIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSV-I---DENK 459 (627)
Q Consensus 385 ~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~-~---~~~~ 459 (627)
+++.+...+++ .....+.+|+..|..||..-..-.. -..++|-++.++.+....++..|..+|..+-. . ...-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 46666666665 4567888999999999864221111 23568999999999999999999988876632 1 1222
Q ss_pred HHhhhhCcHHHHHHHhccCC-HHHHHHHHHHHHHhcc------------------CCCch---H--------HHHHcCCh
Q 006877 460 VAIGAAGAIPALIRLLCDGT-PRGKKDAATAIFNLSI------------------YQGNK---A--------RAVRAGIV 509 (627)
Q Consensus 460 ~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~------------------~~~~~---~--------~l~~~g~v 509 (627)
..|.-.=.+|.|-.++.+.+ ..++..-+..|..|+. +..+- . ..+-.++=
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 33333446677777777633 2222222222222221 11111 0 01111222
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 006877 510 PPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL 589 (627)
Q Consensus 510 ~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~ 589 (627)
+..+.+|.++.+.++..-+..|.-||.--. +.. .+.-.++.|..+|...+...|..-..-+..+|..-+ ..-+++
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG-k~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~se 655 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFG-KEK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSE 655 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhh-hcc-cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHH
Confidence 334445555555555555566666664210 000 011257888899988877777766666665554321 111455
Q ss_pred CcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 590 DAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 590 g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
+++|.|.+-+.++.+.+-.+|...|..|.+.
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHh
Confidence 6788888888899999999999998888654
No 241
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.11 Score=53.03 Aligned_cols=48 Identities=21% Similarity=0.580 Sum_probs=33.9
Q ss_pred ccCCCCcccccCc---e-eccCcccccHHHHHHHHHhC--CCCCCCccccccCC
Q 006877 250 FRCPISLELMKDP---V-IVSTGQTYERSCIQKWLDAG--HKTCPKTQQTLLHT 297 (627)
Q Consensus 250 f~Cpic~~~m~dP---v-~~~cg~t~~r~ci~~~~~~~--~~~CP~~~~~l~~~ 297 (627)
-.|.||-+..-.- - +-+|||+|.-.|+..||... +++||.|+..++..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 4699995544211 1 23699999999999999853 35899999555543
No 242
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.82 E-value=4.6 Score=42.93 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=117.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhCh---hhHHHHHhcCCHHHHHHHhcCC-------CHHHHHHHHHHHHhhccCCc
Q 006877 347 LLGKLANGNVEEQRAAAGELRLLAKRNA---DNRVCIAEAGAIPLLVELLSST-------DPRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 347 Lv~~L~s~~~~~~~~a~~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~nLs~~~~ 416 (627)
+...+...+.+++..|+-....+.+..+ .+|..+.++=+.+.+-++|.++ |...+..++.+|.-.+.+++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5555555667788888888888887543 5677889998889999999763 33455566777776666654
Q ss_pred c--hHHHhhcCChHHHHHHHccC-CHH------HHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHH-HHHHH
Q 006877 417 N--KGTIVNAGAIPDIVDVLKNG-SME------ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPR-GKKDA 486 (627)
Q Consensus 417 ~--k~~i~~~g~i~~Lv~lL~~~-~~e------~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~a 486 (627)
. ...|+ ..||.|.+++..+ +++ ..+.+-.+|...+..+.....+...|+++.+..+-.-.+-. ....|
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 3 33444 3589999999765 222 66788899999999999999999999999998665432211 12222
Q ss_pred HHHHHHhc----cCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 006877 487 ATAIFNLS----IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 536 (627)
Q Consensus 487 ~~aL~nL~----~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~ 536 (627)
+..+.-+. ..++....+.. .|..+..-+...+...+-..+.+|..+-.
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22222222 22233223222 13444443433445556667777774433
No 243
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.099 Score=53.09 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=38.4
Q ss_pred CCccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
..-.|-||+.-.+|-+++||-|. .|..|-.... -.+..||.||+++.
T Consensus 289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence 35689999999999999999995 7888976544 35667999998764
No 244
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=91.72 E-value=3.7 Score=45.34 Aligned_cols=167 Identities=18% Similarity=0.185 Sum_probs=105.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHH---hcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhh
Q 006877 347 LLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIA---EAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVN 423 (627)
Q Consensus 347 Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~---~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~ 423 (627)
.+..+..-+++.+.=|+..||.+.++...+-..+- .+..+..++..+. .++..+..++++|.|+-.++.++..++.
T Consensus 549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33444445678888899999999987655443333 2235666666665 5678888999999999888888877774
Q ss_pred c--CChHHHHHHHccCCHHHHHHHHHHHHHhcCC--chhhHHhhhhCcHHHHHHHhccC-----CHHHHHHHHHHHHHhc
Q 006877 424 A--GAIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLLCDG-----TPRGKKDAATAIFNLS 494 (627)
Q Consensus 424 ~--g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~nL~ 494 (627)
. -.+.++++.=...+..++...+....|+|.. ..+- + .+..+.|...+... +.+.....+.||.+|+
T Consensus 628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-~---~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~ 703 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-Q---LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM 703 (745)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-c---cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence 3 2233333322223345555555555555422 1111 1 34555555544432 3456677889999999
Q ss_pred cCCCchHHHHHcCChHHHHHhhcc
Q 006877 495 IYQGNKARAVRAGIVPPLMRFLKD 518 (627)
Q Consensus 495 ~~~~~~~~l~~~g~v~~Lv~lL~~ 518 (627)
..+.+..++...--|..++.-+.+
T Consensus 704 t~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 704 TVDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred cccHHHHHHHHhcCHHHHHHHHHH
Confidence 998888888887777877777765
No 245
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.1 Score=53.00 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=37.4
Q ss_pred CCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 243 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 243 ~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
..+.|..-.|-||.+-..+.+.+||||+.| |+.-.. ....||.||+.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 344556668999999999999999999977 665443 3456999998653
No 246
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.61 E-value=6.3 Score=45.31 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=113.7
Q ss_pred HHHHhcCC-chhhHHhhhhCcHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHcCCh--HHHHHhhcc-CChh
Q 006877 448 TLFSLSVI-DENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIV--PPLMRFLKD-AGGG 522 (627)
Q Consensus 448 ~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v--~~Lv~lL~~-~~~~ 522 (627)
+|++.... ++++..+.+.|++..+...++. ........++..+.|++...+.+........+ ..+-.++.. .+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 55566544 4788999999999999999986 45778889999999999877655432211111 233334433 3336
Q ss_pred hHHHHHHHHHHHhcChhh------HH----HH--------------hhCCChHH-HHHHHhc-CCHHHHHHHHHHHHHHh
Q 006877 523 MVDEALAILAILASHQEG------KT----AI--------------GQAEPIPV-LMEVIRT-GSPRNRENAAAVLWAIC 576 (627)
Q Consensus 523 ~~~~Al~~L~~L~~~~~~------~~----~i--------------~~~g~v~~-Lv~lL~~-~~~~~~~~A~~~L~~L~ 576 (627)
....|+.+|+.+..+.+. +. .+ .....+.+ +..++.. ..+..+..|++++.+++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 677888888888775321 11 11 11122333 5555654 45778999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHH
Q 006877 577 TGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILEL 616 (627)
Q Consensus 577 ~~~~~~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~ 616 (627)
..+++++..+.+.|+++.+.++-... ....+..+..++..
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 654 EQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred HcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 99999999999999999998875443 55566666655543
No 247
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.50 E-value=0.22 Score=35.95 Aligned_cols=44 Identities=18% Similarity=0.403 Sum_probs=23.1
Q ss_pred ccCCCCcccccCceec-cCccc--ccHHHHHHHH-HhCCCCCCCcccc
Q 006877 250 FRCPISLELMKDPVIV-STGQT--YERSCIQKWL-DAGHKTCPKTQQT 293 (627)
Q Consensus 250 f~Cpic~~~m~dPv~~-~cg~t--~~r~ci~~~~-~~~~~~CP~~~~~ 293 (627)
+.||++...|.-|+-. .|.|. |+-...-... ..+...||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6899999999999974 79885 5553333322 2455789999863
No 248
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=91.35 E-value=3.5 Score=43.74 Aligned_cols=122 Identities=12% Similarity=0.197 Sum_probs=88.3
Q ss_pred HHh-cCCHHHHHHHhcCC---CHHHHHHHHHHHHhhccCCcc-hHHHhhcCChHHHHHHHc-cC---CHHHHHHHHHHHH
Q 006877 380 IAE-AGAIPLLVELLSST---DPRTQEHAVTALLNLSINDSN-KGTIVNAGAIPDIVDVLK-NG---SMEARENAAATLF 450 (627)
Q Consensus 380 i~~-~g~i~~Lv~lL~~~---~~~~~~~A~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~-~~---~~e~~~~aa~~L~ 450 (627)
+.+ ......|..++++. .+.+-..|+.++..+-.++.. -..+.+.|.++.+++.+. .+ +.++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 34455666777765 567788888888888776554 455558999999999998 54 5677777778899
Q ss_pred HhcCCchhhHHhhhhCcHHHHHHHhccCCH-------HHHHHHHHHHHHhccCCCchH
Q 006877 451 SLSVIDENKVAIGAAGAIPALIRLLCDGTP-------RGKKDAATAIFNLSIYQGNKA 501 (627)
Q Consensus 451 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-------~~~~~a~~aL~nL~~~~~~~~ 501 (627)
.||.+....+.+.+.+.++.+++++.+.+- +.....-.++-.|.++.+.-.
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk 238 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLK 238 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999987531 222233445566777654433
No 249
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.29 E-value=3.6 Score=44.38 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=111.0
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 343 AIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 343 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
.+..++....+. ++..+..+++.+..+...-+..- .-.+++..+...+ ...+...+..++.++.-+++ ..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-----aL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITK-----AL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----HH
Confidence 455555554433 35667777777777764311110 0012233333333 23334444444444433322 11
Q ss_pred Hh-----hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chh--------hHHhhhh----CcHHHHHHHhccCCHHH
Q 006877 421 IV-----NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DEN--------KVAIGAA----GAIPALIRLLCDGTPRG 482 (627)
Q Consensus 421 i~-----~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~-~~~--------~~~i~~~----g~i~~Lv~lL~~~~~~~ 482 (627)
++ ....++.++++|.+ +++...++..+.-|..+ ++. ...+.+. ..+|.|++-.++.+...
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI 339 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence 11 12246677777766 56777888888777655 221 1222232 45677777777766668
Q ss_pred HHHHHHHHHHhccCCCchHHHHH-cCChHHHHHhhccCChhhHHHHHHHHHHHhcCh
Q 006877 483 KKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 538 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~ 538 (627)
+..-+.||.++..+-+....+-+ ..++|.|++-|..++.++...++.+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88899999999887654333333 457899999998889999999999999988865
No 250
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.05 E-value=0.44 Score=46.13 Aligned_cols=120 Identities=24% Similarity=0.255 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhccC---CcchHHHhhcCChHHHHHHHccC---------------CHHHHHHHHHHHHHhcCCchhhH
Q 006877 399 RTQEHAVTALLNLSIN---DSNKGTIVNAGAIPDIVDVLKNG---------------SMEARENAAATLFSLSVIDENKV 460 (627)
Q Consensus 399 ~~~~~A~~~L~nLs~~---~~~k~~i~~~g~i~~Lv~lL~~~---------------~~e~~~~aa~~L~~Ls~~~~~~~ 460 (627)
.+|++|+.+|.|++.. ...-+.|.- -+++.|++..-.. .-.-+..|+.+|..|+..+.|..
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~~-PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIAR-PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHHH-HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 5678888888888753 112222211 1233333332221 12348899999999999999999
Q ss_pred HhhhhC-------cHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCchHH--HHHcCChHHHHHhhccC
Q 006877 461 AIGAAG-------AIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKAR--AVRAGIVPPLMRFLKDA 519 (627)
Q Consensus 461 ~i~~~g-------~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~--l~~~g~v~~Lv~lL~~~ 519 (627)
.|...+ .+..|++++.. +++-.++-|+..|.||+..++...+ ..+.++|..|+.++.+.
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 888864 34455566654 4678899999999999998776554 34679999999999753
No 251
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.75 E-value=5.2 Score=44.20 Aligned_cols=132 Identities=19% Similarity=0.243 Sum_probs=84.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~ 420 (627)
.....++...+ ++..+..-|+..|....++-++... .+|..++.+....|..+|..|+..|-.++.+ ++....
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k 96 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK 96 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence 35555666555 5678888899999999887776543 3467899999999999999999999999987 344444
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc---cCCHHHHHHHHHHHH
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---DGTPRGKKDAATAIF 491 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~aL~ 491 (627)
+ .+.|+++|.++++.....+-.+|..|-..+ ..+.+..+..-+. +++..+++.++..|.
T Consensus 97 v-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 V-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp H-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred H-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 3 577888998887655555555554443222 1245555555554 567778888887775
No 252
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=15 Score=44.64 Aligned_cols=274 Identities=16% Similarity=0.126 Sum_probs=139.7
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHh-hccCCcchH
Q 006877 342 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLN-LSINDSNKG 419 (627)
Q Consensus 342 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~n-Ls~~~~~k~ 419 (627)
+.|-.++++-++. .|..+.-|+.-+..+++...+.-.... --.||.|.++=-+++..+|..... ++| |..|+.+..
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~s-IW~~Li~D~k~~v 1033 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTS-IWNALITDSKKVV 1033 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHH-HHHHhccChHHHH
Confidence 3444444444332 255555666666666653321111110 136788888878889999876444 555 444432222
Q ss_pred HHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh-CcHHHHHHHhccCCHHHHH---HHHHHHHHhcc
Q 006877 420 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDGTPRGKK---DAATAIFNLSI 495 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~---~a~~aL~nL~~ 495 (627)
.---..+++-|+.-|.+..+.+|+.++-+|..|-...++-...-.. .....+.+.+++-.+.+++ .++.+|..|+.
T Consensus 1034 d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2122456777777777778999999999999997665432222221 4445555555443333443 45667776664
Q ss_pred CC---C--chHHHHHcCChHHHHHh-hccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHH------
Q 006877 496 YQ---G--NKARAVRAGIVPPLMRF-LKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPR------ 563 (627)
Q Consensus 496 ~~---~--~~~~l~~~g~v~~Lv~l-L~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~------ 563 (627)
.- . .+..-+-..++|.|++- +.+.-.++...++.++..|+.+....-.-.-...+|.|+.....-.+.
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHH
Confidence 21 1 11111222233443321 114567788889999999988654421111113445555444332221
Q ss_pred -----HHHHHHHHHH-HHhcCCH--HHH-------HHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHHH
Q 006877 564 -----NRENAAAVLW-AICTGDA--EQL-------KIARELDAEEALKELSESG-TDRAKRKAGSILELL 617 (627)
Q Consensus 564 -----~~~~A~~~L~-~L~~~~~--~~~-------~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~l 617 (627)
....|+..+. +.+.+.| +.. ..-+-...+|.+.+++..+ .-..|-.++..+-.|
T Consensus 1194 ~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L 1263 (1702)
T KOG0915|consen 1194 LRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLL 1263 (1702)
T ss_pred HhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHH
Confidence 2233343333 2444444 111 1112224688888888876 233344444444443
No 253
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.68 E-value=17 Score=35.90 Aligned_cols=225 Identities=18% Similarity=0.142 Sum_probs=128.4
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 344 IDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 344 i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
+..+.+.|... ....+..|+-.|+++.... . +..+.+....++......++.+|+ ++
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~--~---------i~~i~ka~~d~s~llkhe~ay~Lg----------Q~ 63 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPA--A---------IKAITKAFIDDSALLKHELAYVLG----------QM 63 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCChH--H---------HHHHHHhcccchhhhccchhhhhh----------hh
Confidence 34444444432 2344556666666665321 1 344444444443333344444453 33
Q ss_pred hhcCChHHHHHHHccCC--HHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc
Q 006877 422 VNAGAIPDIVDVLKNGS--MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~--~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 499 (627)
....+++.++.+|...+ +-+|..|+.+|..+- . ....+.+-++.+++...+++.+..|+..+-..+..
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 45678999999997664 678889999998775 2 23455566666555566666666677666532211
Q ss_pred hH-----HHH--------HcCChHHHHHhhccCChhh--HHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHH
Q 006877 500 KA-----RAV--------RAGIVPPLMRFLKDAGGGM--VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRN 564 (627)
Q Consensus 500 ~~-----~l~--------~~g~v~~Lv~lL~~~~~~~--~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~ 564 (627)
.. ... ..+-|.-|-..|.+..... ...|+..|.|+-.. .+|..|.+-+..++.-.
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADDSALF 203 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccchHHH
Confidence 11 000 1112333433333322211 22344444444321 24556666666678888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC--ChHHHHHHHHHHHHHHhH
Q 006877 565 RENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQRI 620 (627)
Q Consensus 565 ~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~--~~~~k~~A~~lL~~l~~~ 620 (627)
|..++.++.+|-+.. .|+.|.+.+... .+-++..|+.+|..+.+.
T Consensus 204 rhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e 250 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE 250 (289)
T ss_pred HHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence 999999998876543 678888877654 688899999999887643
No 254
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=90.67 E-value=4.1 Score=48.06 Aligned_cols=228 Identities=17% Similarity=0.163 Sum_probs=133.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhh---hChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhcc----
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAK---RNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSI---- 413 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~---~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~---- 413 (627)
-.++-++.++.....++|..|+..|..+.. .-+..-..+.-.=..|.|-.++.+. ...+|..-+..|..||.
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 356777888888888999999988776542 1111112233233567777777663 33333333333333331
Q ss_pred --------------C-CcchHHHh----------hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh---
Q 006877 414 --------------N-DSNKGTIV----------NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--- 465 (627)
Q Consensus 414 --------------~-~~~k~~i~----------~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--- 465 (627)
+ +++..... ..++=..++.+|....+-++..-...|.-| +..+++.
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~L------C~FFGk~ksN 615 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPL------CVFFGKEKSN 615 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH------HHHhhhcccc
Confidence 1 11100000 011112223333333444444433333333 3334433
Q ss_pred -CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHH
Q 006877 466 -GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAI 544 (627)
Q Consensus 466 -g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i 544 (627)
-.++.|+..|++.+...+-.-...|..++..-+ .+-++.+++|.|.+-|.+.++.++..|+++|..|+...--+...
T Consensus 616 D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~ 693 (1431)
T KOG1240|consen 616 DVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA 693 (1431)
T ss_pred cchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH
Confidence 356778888887776665554555555554322 12356778899999999999999999999999999865443322
Q ss_pred hhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 006877 545 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 545 ~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~ 578 (627)
+. ..+.....+|-+++.-+|..++.++......
T Consensus 694 v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 694 VK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 21 3566667788889999999999999887764
No 255
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.65 E-value=7.3 Score=41.72 Aligned_cols=226 Identities=15% Similarity=0.060 Sum_probs=127.0
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHhhh-hCcHHH
Q 006877 393 LSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGA-AGAIPA 470 (627)
Q Consensus 393 L~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~ 470 (627)
.++++..++..|+..|.|++..-..+..-...-.+..++.-|.++ +.++.-.+..+|..+...-.+....-- ..+.-.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 355678899999999999987633332222334566666666554 578888888877766443222211111 134445
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhccCCCchHH--HHH--cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHh-
Q 006877 471 LIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR--AVR--AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG- 545 (627)
Q Consensus 471 Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~--l~~--~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~- 545 (627)
+..+..+.+++.+..|..++..|+.......+ +.+ .+...+++-.|.++++.+ ..|+......|.-.-.+++..
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~p~l~rke~~~ 425 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCYPNLVRKELYH 425 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcCchhHHHHHHH
Confidence 66777888899999999988888876554443 332 233445555666666643 334444433333211111111
Q ss_pred -----------------h-----C-CChHHHHHHHhc-------CC-HHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHH
Q 006877 546 -----------------Q-----A-EPIPVLMEVIRT-------GS-PRNRENAAAVLWAICTGDA-EQLKIARELDAEE 593 (627)
Q Consensus 546 -----------------~-----~-g~v~~Lv~lL~~-------~~-~~~~~~A~~~L~~L~~~~~-~~~~~~~~~g~i~ 593 (627)
+ . ...+-++.++.+ .+ +.+++.|+..-.+..-+-. ..+...-..-+..
T Consensus 426 ~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~ 505 (533)
T KOG2032|consen 426 LFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRS 505 (533)
T ss_pred HHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHH
Confidence 0 0 112222222221 12 3455555555444443322 2333333334566
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 594 ALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 594 ~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.|..+-+...+++.+.|..++..+..
T Consensus 506 ~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 506 SLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHccCCCchhHHHHHHHhhhHhh
Confidence 77778888899999999999887753
No 256
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=90.60 E-value=1.1 Score=43.38 Aligned_cols=86 Identities=21% Similarity=0.202 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhCCCh-------HHHHHHHh-cCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHcCcHHH
Q 006877 524 VDEALAILAILASHQEGKTAIGQAEPI-------PVLMEVIR-TGSPRNRENAAAVLWAICTGDAEQL-KIARELDAEEA 594 (627)
Q Consensus 524 ~~~Al~~L~~L~~~~~~~~~i~~~g~v-------~~Lv~lL~-~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~g~i~~ 594 (627)
+..|+.+|..|+-.+.+...++.++-. ..|+++|. .+++-.||.|+.+|.+||..+...+ ....+.+.|..
T Consensus 141 qrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~ 220 (257)
T PF12031_consen 141 QRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISH 220 (257)
T ss_pred HHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHH
Confidence 688999999999998888888776653 44445554 3567899999999999999998766 44467789999
Q ss_pred HHHhhhcCChHHHHH
Q 006877 595 LKELSESGTDRAKRK 609 (627)
Q Consensus 595 L~~l~~~~~~~~k~~ 609 (627)
|+.++......+...
T Consensus 221 Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 221 LIAFIEDAEQNAHQV 235 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998875544433
No 257
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=90.48 E-value=14 Score=37.46 Aligned_cols=218 Identities=13% Similarity=0.143 Sum_probs=143.7
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhc--CCHHHHHHHhcC-C-CHHHHHHHHHHHHhhccCCc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA--GAIPLLVELLSS-T-DPRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~-~-~~~~~~~A~~~L~nLs~~~~ 416 (627)
++....++..+...+.+.+..++....++-+.....|...++. .-...+..++.. . .+++.-++...|.....++.
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~ 157 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEF 157 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHH
Confidence 4577889999999999999999998888877655555443332 112222223322 2 24444444444444444555
Q ss_pred chHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhh-HHhhhh--CcHHH-HHHHhccCCHHHHHHHHHHHH
Q 006877 417 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENK-VAIGAA--GAIPA-LIRLLCDGTPRGKKDAATAIF 491 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~-~~i~~~--g~i~~-Lv~lL~~~~~~~~~~a~~aL~ 491 (627)
....|....-+...-.....++-++...|..+...+-..+ ... +.+... ..++. --.++.+++.-++..+..+|+
T Consensus 158 LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg 237 (342)
T KOG1566|consen 158 LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLG 237 (342)
T ss_pred HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHH
Confidence 5556666777777777888787788888888877664333 122 222222 23333 566788889889999999999
Q ss_pred HhccCCCchHHHHH----cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh--CCChHHHHHHHh
Q 006877 492 NLSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIR 558 (627)
Q Consensus 492 nL~~~~~~~~~l~~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~--~g~v~~Lv~lL~ 558 (627)
.+-.+..|...|.. ...+..++.+|.+++..++-.|..+.+....++.--+.|.+ ..-=+.|++++.
T Consensus 238 ~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~ 310 (342)
T KOG1566|consen 238 ELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLH 310 (342)
T ss_pred HHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHH
Confidence 99998888876653 36788999999999999999999999999887543222211 112356666664
No 258
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.20 E-value=3.1 Score=41.84 Aligned_cols=184 Identities=17% Similarity=0.210 Sum_probs=108.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcC--ChHHHHHHHccC----CHHHHHHHHHHHHHhcCCchhhH
Q 006877 387 PLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAG--AIPDIVDVLKNG----SMEARENAAATLFSLSVIDENKV 460 (627)
Q Consensus 387 ~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~~----~~e~~~~aa~~L~~Ls~~~~~~~ 460 (627)
..+.+++..=..+-+--++..+.-++.++..-..+...+ ....+..++..+ .+..+..+++++.|+-.+..++.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 344444433222334445565655555555444444322 345555555443 56778889999999998888888
Q ss_pred Hhhhh-C-cHHHHHHHhccC----CHHHHHHHHHHHHHhccCCC-ch-HHHHHcCChHHHHHhhc-c-CChhhHHHHHHH
Q 006877 461 AIGAA-G-AIPALIRLLCDG----TPRGKKDAATAIFNLSIYQG-NK-ARAVRAGIVPPLMRFLK-D-AGGGMVDEALAI 530 (627)
Q Consensus 461 ~i~~~-g-~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~-~~-~~l~~~g~v~~Lv~lL~-~-~~~~~~~~Al~~ 530 (627)
.+... + .+...+..+... +..++..++..++|++..-. ++ ..-.....+..+.+.+. . .+++....++-+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 88776 4 455555554444 56778888889999986311 11 11111123455566332 2 688999999999
Q ss_pred HHHHhcChhhHHHHhhC-CChHHHHHHHh-cCCHHHHHHHHH
Q 006877 531 LAILASHQEGKTAIGQA-EPIPVLMEVIR-TGSPRNRENAAA 570 (627)
Q Consensus 531 L~~L~~~~~~~~~i~~~-g~v~~Lv~lL~-~~~~~~~~~A~~ 570 (627)
|++|...+......... |+-..+-..-. ...+++++.+..
T Consensus 226 lGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e 267 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE 267 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence 99999877666666654 43333333333 345777776643
No 259
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.17 E-value=0.1 Score=49.51 Aligned_cols=47 Identities=26% Similarity=0.558 Sum_probs=36.0
Q ss_pred CCccCCCCcc-cccCcee--c--c-CcccccHHHHHHHHHhCCCCCC--Cccccc
Q 006877 248 DDFRCPISLE-LMKDPVI--V--S-TGQTYERSCIQKWLDAGHKTCP--KTQQTL 294 (627)
Q Consensus 248 ~~f~Cpic~~-~m~dPv~--~--~-cg~t~~r~ci~~~~~~~~~~CP--~~~~~l 294 (627)
.+-.||+|.. ..-+|-+ + | |-|..|-+|+.+.|..|...|| .|++.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3568999974 4444532 2 4 9999999999999999999999 576544
No 260
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.08 E-value=8.7 Score=44.25 Aligned_cols=211 Identities=20% Similarity=0.203 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHH
Q 006877 354 GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDV 433 (627)
Q Consensus 354 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l 433 (627)
..+.++..++..+..+++.-.. .....+.+|.+..+.......+++.|...+.++...-.... =......+.++..
T Consensus 249 ~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~ 324 (759)
T KOG0211|consen 249 DTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQA 324 (759)
T ss_pred cchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHH
Confidence 3466777777777777753322 66677899999999999989999999998888854211110 1123467888888
Q ss_pred HccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC--CCchHHHHHcCChHH
Q 006877 434 LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY--QGNKARAVRAGIVPP 511 (627)
Q Consensus 434 L~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~~~~~~l~~~g~v~~ 511 (627)
...++..++...+.....|+..=. ...+...-+++...+++....++...++.-...++.+ .+....+....++|.
T Consensus 325 ~~d~~~~v~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~ 402 (759)
T KOG0211|consen 325 VEDGSWRVSYMVADKFSELSSAVG--PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPE 402 (759)
T ss_pred hcChhHHHHHHHhhhhhhHHHHhc--cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHH
Confidence 888888888888888777753311 1444445678888888776666666665555555543 334455666667788
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHH
Q 006877 512 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 572 (627)
Q Consensus 512 Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L 572 (627)
+-.+..+.+..+....+.....+.-.-. +..-+ .-..|.+...++...+.++.+-...+
T Consensus 403 ~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti-~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 403 VQVLVLDNALHVRSALASVITGLSPILP-KERTI-SELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred HHHHHhcccchHHHHHhccccccCccCC-cCcCc-cccChhhhhhcchhhHHHHHhhHHHH
Confidence 8888877777666555555544433111 00000 12344444455555555666555444
No 261
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=0.3 Score=50.15 Aligned_cols=63 Identities=25% Similarity=0.378 Sum_probs=47.5
Q ss_pred ccCCCCccccc------CceeccCcccccHHHHHHHHHhCCCCCCCcccccc--C---CCCCccHHHHhhhHHH
Q 006877 250 FRCPISLELMK------DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL--H---TALTPNYVLKSLIALW 312 (627)
Q Consensus 250 f~Cpic~~~m~------dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~--~---~~l~~n~~l~~~i~~~ 312 (627)
+.|-||.+-+. -|-++.||||+|..|+.+.+..+...||.||.+.. . ..+..|..+...++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 45788876553 57778899999999999888777788999998842 2 2366777777777654
No 262
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.65 E-value=0.69 Score=29.52 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=25.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 006877 550 IPVLMEVIRTGSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 550 v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~ 578 (627)
+|.++++++++++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998753
No 263
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=0.23 Score=48.71 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=31.5
Q ss_pred CccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCccccc
Q 006877 249 DFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTL 294 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l 294 (627)
+..|.||++..+|-|.++|||. -|-.|=. .-..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHH
Confidence 7889999999999999999994 2444411 224799999754
No 264
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.40 E-value=6.8 Score=45.47 Aligned_cols=185 Identities=14% Similarity=0.141 Sum_probs=118.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCcchHHHhh
Q 006877 345 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVN 423 (627)
Q Consensus 345 ~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~nLs~~~~~k~~i~~ 423 (627)
+.+-..+.+.+|..+.+|+..+.....+.. ........|.+-.+++... +.|..+...|+.+|..++..-..-..=..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 344555667889999999999988876443 1111112233444444433 34677777888888888754211111123
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC-C-CchH
Q 006877 424 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY-Q-GNKA 501 (627)
Q Consensus 424 ~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~-~~~~ 501 (627)
.+.++.|.+.+..-...+++.+..++-.... .-.-...++.++..++++++..+..+...+...... + ....
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 5677888888877777777666665543322 111124677888889999998888876666655442 2 2222
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 006877 502 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 536 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~ 536 (627)
.-.-.++++.++.+..+.+.+++..|..+++.+..
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 33345678888888888899999998888887765
No 265
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.30 E-value=12 Score=40.31 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=87.3
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccC-CC--------chHHHHHc----CChHHHHHhhccCChhhHHHHHHHHH
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIY-QG--------NKARAVRA----GIVPPLMRFLKDAGGGMVDEALAILA 532 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~--------~~~~l~~~----g~v~~Lv~lL~~~~~~~~~~Al~~L~ 532 (627)
..+..|+.++.+ ++....|+.++.-|... ++ +...+.+. .++|.|++.....+...+...+.+|.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 356667777766 55667777777777665 22 22223333 35677777776666667788888999
Q ss_pred HHhcChhhHHHHhh-CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHh
Q 006877 533 ILASHQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKEL 598 (627)
Q Consensus 533 ~L~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 598 (627)
.+..+-.....+-+ ...+|.|++-|..+++.++..+..+|..+....++....-.+ .+|+.|+.+
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~l 414 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLKL 414 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHhc
Confidence 88886443222222 247888899998889999999999999999988765544332 466666654
No 266
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.16 E-value=9.4 Score=42.25 Aligned_cols=98 Identities=27% Similarity=0.377 Sum_probs=63.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
..++..++.+....+..++.+|++.|-.++++++++...++ ..|+++|.++++.....+-.+|..|-..+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d----- 127 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQD----- 127 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcC-----
Confidence 45888999999999999999999999999998877766664 68999999988766665555555543211
Q ss_pred HhhcCChHHHHHHHc---cCCHHHHHHHHHHHH
Q 006877 421 IVNAGAIPDIVDVLK---NGSMEARENAAATLF 450 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~---~~~~e~~~~aa~~L~ 450 (627)
..+.+..+...+. ++++.+|+.+...|.
T Consensus 128 --~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 128 --PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 1334555555554 567788998887774
No 267
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=15 Score=41.37 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=77.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc-----------CCHHHHHHHHHHHHHhccC-C
Q 006877 430 IVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-----------GTPRGKKDAATAIFNLSIY-Q 497 (627)
Q Consensus 430 Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~nL~~~-~ 497 (627)
++++|.+++-+++..+..+...|+... -+..++.+|+. .+.+-+..-+.++...+.. +
T Consensus 322 vLrvLss~dldvr~Ktldi~ldLvssr----------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 322 VLRVLSSPDLDVRSKTLDIALDLVSSR----------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred HHHHcCcccccHHHHHHHHHHhhhhhc----------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh
Confidence 445555666666666666666665443 33344444431 1123345556666665542 2
Q ss_pred CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 006877 498 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAI 575 (627)
Q Consensus 498 ~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L 575 (627)
+ +.+.+|+.|++++.+.++......+..+..... .|.-|..+ +..|++-+.. .+.++-+.|+|++..-
T Consensus 392 ~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeY 461 (948)
T KOG1058|consen 392 E-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASI-----IEKLLETFPQIRSSKICRGALWILGEY 461 (948)
T ss_pred H-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHH
Confidence 2 335678999999998887665555555554443 34444443 4455554432 5677788999999998
Q ss_pred hcCCHH
Q 006877 576 CTGDAE 581 (627)
Q Consensus 576 ~~~~~~ 581 (627)
|....+
T Consensus 462 ce~~~~ 467 (948)
T KOG1058|consen 462 CEGLSE 467 (948)
T ss_pred HhhhHH
Confidence 887763
No 268
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.87 E-value=8.4 Score=44.81 Aligned_cols=251 Identities=18% Similarity=0.199 Sum_probs=151.2
Q ss_pred HHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCC----
Q 006877 363 AGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGS---- 438 (627)
Q Consensus 363 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~---- 438 (627)
..+|-.+.+.+.+|...+.++.++..++.++-+ .+-|...+.++.-|-..+..+ +....+-.+|..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 456777888899999999999998888888843 344444455555443332211 12234566777777741
Q ss_pred --------HHHHHHHHHHHHHhcCC-chhhHHhhhhCcHHHHHHHhcc----------CCHHHHHHHHHHHH---Hh--c
Q 006877 439 --------MEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCD----------GTPRGKKDAATAIF---NL--S 494 (627)
Q Consensus 439 --------~e~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~aL~---nL--~ 494 (627)
..+......+++..-.. ...+..+++++++..|...|.. ++.-+...-...|+ .+ +
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 12344555677766533 3667888889888888877753 12112222223333 23 3
Q ss_pred cCCCchHHH-------------HHcC---------ChHHHHHhh-cc-CChhhH--HHHHHHHHHHhc------Chh---
Q 006877 495 IYQGNKARA-------------VRAG---------IVPPLMRFL-KD-AGGGMV--DEALAILAILAS------HQE--- 539 (627)
Q Consensus 495 ~~~~~~~~l-------------~~~g---------~v~~Lv~lL-~~-~~~~~~--~~Al~~L~~L~~------~~~--- 539 (627)
.++.|+.++ .+.| .|..|.++- .. ..+.+. ..|+.-+-.+-. .|.
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 345555432 1233 122222211 00 111111 122222222211 122
Q ss_pred --hHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhh---hcCChHHHHHHHHHH
Q 006877 540 --GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELS---ESGTDRAKRKAGSIL 614 (627)
Q Consensus 540 --~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~---~~~~~~~k~~A~~lL 614 (627)
.++.+...|++..|++.+-...++.+-.-...|-.+++.+|.+....-..|.+..|++++ .+|+...-..|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 256677889999999998888899999999999999999998888888889999999885 456666666666666
Q ss_pred HHHH
Q 006877 615 ELLQ 618 (627)
Q Consensus 615 ~~l~ 618 (627)
.+|.
T Consensus 978 emLg 981 (2799)
T KOG1788|consen 978 EMLG 981 (2799)
T ss_pred HHHh
Confidence 6664
No 269
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=88.86 E-value=13 Score=42.84 Aligned_cols=266 Identities=17% Similarity=0.095 Sum_probs=149.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 344 IDALLGKLANGNVEEQRAAAGELRLLAKR-NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 344 i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
++.....++...++....++.....++.. +...+..+.....+|.+-.+..+.+..++...+....+++---. +..-
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t- 434 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT- 434 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-
Confidence 45555666655566666666666666532 32334556666677888888888888888776666666643211 1111
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 501 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 501 (627)
-.-.++.++..++...++++.+..+.+..+-.. +...........+|.++.+-....-+++...+..+..++.... .
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~ 512 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V 512 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence 123466667777777888888888776554322 2233334444667777777666566777777777777776543 2
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 502 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
.+...-.-+.+...+.+..-.+.+.|...+..++..-. ...-. ...++.++.....++...|...+..+..|+.--
T Consensus 513 ~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~-- 588 (759)
T KOG0211|consen 513 EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL-- 588 (759)
T ss_pred HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHh--
Confidence 33332233444444544455667777777777665332 11111 124555555554444444443333333222211
Q ss_pred HHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 582 QLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 582 ~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
-..+.....++.+..+..+..+.+|-.++..|.-+.
T Consensus 589 -g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 589 -GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred -ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 112333345667777777777777777776666553
No 270
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=7.1 Score=47.29 Aligned_cols=230 Identities=20% Similarity=0.182 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCCHHHHHHH-HHHHHHHhhhChhhHHHHH-hcCCHHHHHHHhcCCCHHHHHHHHHHHHhhcc--CCcch
Q 006877 343 AIDALLGKLANGNVEEQRAA-AGELRLLAKRNADNRVCIA-EAGAIPLLVELLSSTDPRTQEHAVTALLNLSI--NDSNK 418 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a-~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~--~~~~k 418 (627)
....+...+.+.++..+..+ +|.|...- .....+.... ...+...+..+|...|.-+|..|..-|+-+-. +...+
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq-~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQ-YLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 44556666678888776544 34433322 2222222222 22344778889999999999988876655422 33334
Q ss_pred HHHhhcCChHHHHHHHccCCH-------HHHHHHHHHHH------HhcCCchh---hHHhhhhCcHHHHHHHhccCC-HH
Q 006877 419 GTIVNAGAIPDIVDVLKNGSM-------EARENAAATLF------SLSVIDEN---KVAIGAAGAIPALIRLLCDGT-PR 481 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~-------e~~~~aa~~L~------~Ls~~~~~---~~~i~~~g~i~~Lv~lL~~~~-~~ 481 (627)
..+ ++.|+.-|-.|.. |+.-..-.+|. +++.+.+. ...+++...+-.++++.++.. =.
T Consensus 898 ~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wn 972 (1702)
T KOG0915|consen 898 KSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWN 972 (1702)
T ss_pred HHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhh
Confidence 333 4455555543321 11111111111 01111000 011222233444444444421 11
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH-HhcChhh-HHHHhhCCChHHHHHHHhc
Q 006877 482 GKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI-LASHQEG-KTAIGQAEPIPVLMEVIRT 559 (627)
Q Consensus 482 ~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~-L~~~~~~-~~~i~~~g~v~~Lv~lL~~ 559 (627)
.++-|+--+..|+.....+.+=.-.-.||.|.+.=.+++..++. |+.-+|| |...+.. ..... ...+.-|+.-+.+
T Consensus 973 Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDELLVNLTS 1050 (1702)
T ss_pred cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccc
Confidence 22223333333332221111111123577777776778777655 5555555 4444222 22222 1355666666666
Q ss_pred CCHHHHHHHHHHHHHHhcCCH
Q 006877 560 GSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 560 ~~~~~~~~A~~~L~~L~~~~~ 580 (627)
...++||.++.+|..|-.+.|
T Consensus 1051 kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCC
Confidence 778999999999999998876
No 271
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.63 E-value=4.1 Score=39.02 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcChh--hHHHHhhCCChHH
Q 006877 480 PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQE--GKTAIGQAEPIPV 552 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~L~~~~~--~~~~i~~~g~v~~ 552 (627)
..-..+|+..|..++++++.+..++++.+--.|..+|.. +...++-.++++++.|..+.+ .-..+..+..+|.
T Consensus 114 snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 114 SNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 345667888999999999999999988765445555532 334566789999999998643 4556667889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 553 LMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 553 Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
+++++..|+.-.|.-|+.++..+-.++.
T Consensus 194 cLrIme~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccch
Confidence 9999999999999999999887666554
No 272
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=0.36 Score=46.38 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=40.3
Q ss_pred CCCccCCCCcccccCcee----ccCcccccHHHHHHHHHhCCCCCCCccccccCCCCC
Q 006877 247 PDDFRCPISLELMKDPVI----VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT 300 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~----~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~ 300 (627)
...|.|||++-.|..-.. .+|||.|....+.+.- ...|+.|+......+.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 457999999999976543 4899999988877653 46899999998876643
No 273
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.40 E-value=0.52 Score=49.75 Aligned_cols=181 Identities=17% Similarity=0.101 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhhccCCcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC----chhhHHhhhh--C-cHH
Q 006877 398 PRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVI----DENKVAIGAA--G-AIP 469 (627)
Q Consensus 398 ~~~~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~----~~~~~~i~~~--g-~i~ 469 (627)
.-++..|..++.-+..++..+.... -..+...+...|.+..-..++.++|++.|++.. -.+.....+. | .+.
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~ 484 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLL 484 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHH
Confidence 3355566666666666665554433 566777788888777778899999999998521 1111111111 1 122
Q ss_pred HHHHHhc---cCCHHHHHHHHHHHHHhccCCCchH----HHHHcCChHHHHHh-hccCChhhHHHHHHHHHHHhcChhhH
Q 006877 470 ALIRLLC---DGTPRGKKDAATAIFNLSIYQGNKA----RAVRAGIVPPLMRF-LKDAGGGMVDEALAILAILASHQEGK 541 (627)
Q Consensus 470 ~Lv~lL~---~~~~~~~~~a~~aL~nL~~~~~~~~----~l~~~g~v~~Lv~l-L~~~~~~~~~~Al~~L~~L~~~~~~~ 541 (627)
.++.... ....+++.+|..+|.|+...-.... .....|.+..+... .......++=+|+.+++||.+++.-.
T Consensus 485 ~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 485 KMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccc
Confidence 2222221 2357888999999999875322111 11222222222222 22245667788999999999987642
Q ss_pred HH-H-hhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhcC
Q 006877 542 TA-I-GQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 542 ~~-i-~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~ 578 (627)
-+ + ....+++.|..++.. .+.++|.+|+.+|..-...
T Consensus 565 lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 565 LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 11 1 222357888888764 6788999999998765553
No 274
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=87.84 E-value=47 Score=36.51 Aligned_cols=110 Identities=18% Similarity=0.111 Sum_probs=69.4
Q ss_pred HhHHHHHHHHhcCCC----HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCc
Q 006877 341 RAAIDALLGKLANGN----VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~----~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~ 416 (627)
..+.-.+++.+.++. .-.-...++.+..+.+.+++.+..+. |.|-.-|++.-..++..++.++..++...-
T Consensus 222 kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 222 KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENV 296 (898)
T ss_pred HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhcc
Confidence 345566777766543 11122334555566666776665554 777777888778888888888888875431
Q ss_pred chHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch
Q 006877 417 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE 457 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~ 457 (627)
. .... ...+..|-.+|++...-.+-.|.++|..|+...+
T Consensus 297 ~-~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 297 G-SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred C-HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 1 1111 1235555666677778888899999999875543
No 275
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=0.36 Score=39.67 Aligned_cols=27 Identities=22% Similarity=0.753 Sum_probs=23.0
Q ss_pred cCcccccHHHHHHHHHhCCCCCCCcccc
Q 006877 266 STGQTYERSCIQKWLDAGHKTCPKTQQT 293 (627)
Q Consensus 266 ~cg~t~~r~ci~~~~~~~~~~CP~~~~~ 293 (627)
.|+|.|.-.||.+|++. ...||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 69999999999999994 5569998754
No 276
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.62 E-value=3.1 Score=32.71 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 006877 524 VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELD 590 (627)
Q Consensus 524 ~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g 590 (627)
.+.|+++++++++.+.+...+.+.+.++.++++... +...+|-.|..+|.-++... +....+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~-~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE-EGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH-HHHHHHHHcC
Confidence 467999999999999999888888999999999985 55789999999998888755 5566565555
No 277
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.31 E-value=49 Score=39.12 Aligned_cols=225 Identities=18% Similarity=0.157 Sum_probs=132.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCcchHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
..+..|+..+++.+..++..|++-+..++...+. .+++ .+|...+.++.-. +...-..|+-+|..|+...-....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 5777788888888999999999999999987662 2222 3455556655443 355666888889888753111000
Q ss_pred HhhcCChHHHHHHHccC--------CHHHHHHHHHHHHHhcCCchhh--HHhhhhCcHHHHHHHhccCCHHHHHHHHHHH
Q 006877 421 IVNAGAIPDIVDVLKNG--------SMEARENAAATLFSLSVIDENK--VAIGAAGAIPALIRLLCDGTPRGKKDAATAI 490 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~--------~~e~~~~aa~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 490 (627)
. -..++|.++.-|.-+ ...+|..|+.+.|.++...... .-+...=+-..|+..+-+.+...+..|..|+
T Consensus 417 ~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 L-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred H-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 0 023455555555321 2457888888888886543211 1111111122233444455677888888888
Q ss_pred HHhccCCCch----H----------------------HHHH-cCChHHHHHhh-----ccCChhhHHHHHHHHHHHhcCh
Q 006877 491 FNLSIYQGNK----A----------------------RAVR-AGIVPPLMRFL-----KDAGGGMVDEALAILAILASHQ 538 (627)
Q Consensus 491 ~nL~~~~~~~----~----------------------~l~~-~g~v~~Lv~lL-----~~~~~~~~~~Al~~L~~L~~~~ 538 (627)
........|. . .+.+ .|...++++.| .+-+..+++.+..+|.+|+...
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~ 575 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE 575 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 8665443332 1 1111 34445555544 3357788899999999987642
Q ss_pred hhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 006877 539 EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 574 (627)
Q Consensus 539 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~ 574 (627)
. .....+.+++++....+++...+.-+..+...
T Consensus 576 p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~e 608 (1133)
T KOG1943|consen 576 P---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGE 608 (1133)
T ss_pred H---HhhcccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence 1 22334677888888877776666544444333
No 278
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.25 E-value=7.8 Score=38.95 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHcC--ChHHHHHhhccC----ChhhHHHHHHHHHHHhcChh-hH-HHHhhCCC
Q 006877 478 GTPRGKKDAATAIFNLSIYQGNKARAVRAG--IVPPLMRFLKDA----GGGMVDEALAILAILASHQE-GK-TAIGQAEP 549 (627)
Q Consensus 478 ~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g--~v~~Lv~lL~~~----~~~~~~~Al~~L~~L~~~~~-~~-~~i~~~g~ 549 (627)
..+..+..++++++|+-.++.++..+.+.. .+-..+..+... +..++-.+..++.|++..-- .+ ..-.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 357778889999999999999998887643 344443333332 56677778888889976311 11 00001113
Q ss_pred hHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhc-CChHHHHHHHHH
Q 006877 550 IPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSI 613 (627)
Q Consensus 550 v~~Lv~lL~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~-~~~~~k~~A~~l 613 (627)
+..+.+.+.. .++++.-.++.+|++|+..++.........|+-..+...... ..++.++.+..+
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 4555553332 578889999999999998887666666556776666666544 478888877654
No 279
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=87.11 E-value=18 Score=41.66 Aligned_cols=192 Identities=16% Similarity=0.119 Sum_probs=121.2
Q ss_pred HHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcchHHHhhcCChH--HHHHHHccCCH-H
Q 006877 365 ELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIP--DIVDVLKNGSM-E 440 (627)
Q Consensus 365 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~--~Lv~lL~~~~~-e 440 (627)
.|...+..++++...+.+.|++..+...+.. .+..++..++..+.|++...+++........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888999999999999999999999999986 577899999999999998766655554322222 33334445444 7
Q ss_pred HHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHH-HhccCCCchHHHHHcCChHH-HHHhhcc
Q 006877 441 ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF-NLSIYQGNKARAVRAGIVPP-LMRFLKD 518 (627)
Q Consensus 441 ~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~-nL~~~~~~~~~l~~~g~v~~-Lv~lL~~ 518 (627)
....|+.+|+.+..+.+. .... ..+..+...+. +.........++.....+.+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~---------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTEC---------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccc---------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 778888888777554332 1111 11222222222 22223333333333333333 4455533
Q ss_pred -CChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHH
Q 006877 519 -AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWA 574 (627)
Q Consensus 519 -~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~ 574 (627)
..+..+.-|++++.+++. +++....+.+.|+++.+...-.. ....+++.+..++-.
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIES 694 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhc
Confidence 566778889999999988 46666667777888877665543 234566666655543
No 280
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=21 Score=40.94 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=110.8
Q ss_pred ccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcch
Q 006877 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 418 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k 418 (627)
.+.+.....+..+.+....++-.|+..|+.+.+.. .....+...+++......|++.|+-+--+|+..+..|+.-
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev---- 798 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV---- 798 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh----
Confidence 34456777778888777889999999999999643 5666777889999999999999998888888866666532
Q ss_pred HHHhhcCChHHHHHHHcc-C---CH-------HHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHH
Q 006877 419 GTIVNAGAIPDIVDVLKN-G---SM-------EARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAA 487 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~-~---~~-------e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 487 (627)
.....+|.+.+.-.+ . .. |+....+.++..|+. .++. -.+...+..+++++...+..++
T Consensus 799 ---y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~--~y~~-----~Li~tfl~gvrepd~~~RaSS~ 868 (982)
T KOG4653|consen 799 ---YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF--KYKA-----VLINTFLSGVREPDHEFRASSL 868 (982)
T ss_pred ---cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH--HHHH-----HHHHHHHHhcCCchHHHHHhHH
Confidence 234456666653221 1 11 222222333322221 1111 2334444455555566688888
Q ss_pred HHHHHhccCCCchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhc
Q 006877 488 TAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILAS 536 (627)
Q Consensus 488 ~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~ 536 (627)
..+++||.-...+..=.-..++..++.+... ++.-++..|+.++..+-.
T Consensus 869 a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 869 ANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 8888888643222111223344455555533 555666777777766654
No 281
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.58 E-value=0.34 Score=52.57 Aligned_cols=38 Identities=32% Similarity=0.621 Sum_probs=31.2
Q ss_pred CCccCCCCcccc----cCceeccCcccccHHHHHHHHHhCCCCCC
Q 006877 248 DDFRCPISLELM----KDPVIVSTGQTYERSCIQKWLDAGHKTCP 288 (627)
Q Consensus 248 ~~f~Cpic~~~m----~dPv~~~cg~t~~r~ci~~~~~~~~~~CP 288 (627)
+-..|+||.-.+ ..||.+-||||.|+.|.+.... .+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence 456899996554 4899999999999999998775 4677
No 282
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=86.38 E-value=35 Score=33.52 Aligned_cols=137 Identities=23% Similarity=0.215 Sum_probs=85.2
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHhhccCC-cchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhh
Q 006877 386 IPLLVE-LLSSTDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 463 (627)
Q Consensus 386 i~~Lv~-lL~~~~~~~~~~A~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~ 463 (627)
+|.|+. +-+..+++.+...+.+|..++.++ .+... ++..|..+...+..+....+...+..+-..++ +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH--
Confidence 455555 445568999999999999998876 33222 35556666667766665556666655532221 111
Q ss_pred hhCcHHHHHHHh--------ccC--CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhh-ccCChhhHHHHHHHHH
Q 006877 464 AAGAIPALIRLL--------CDG--TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFL-KDAGGGMVDEALAILA 532 (627)
Q Consensus 464 ~~g~i~~Lv~lL--------~~~--~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL-~~~~~~~~~~Al~~L~ 532 (627)
+.+..++..+ .++ ..+.....+.++..+|...++ .-...++.+..+| .+.++.++..++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3444444431 111 223344445678888876555 2223578888888 7778888999999999
Q ss_pred HHhc
Q 006877 533 ILAS 536 (627)
Q Consensus 533 ~L~~ 536 (627)
.||.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 9993
No 283
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=86.19 E-value=39 Score=33.86 Aligned_cols=214 Identities=16% Similarity=0.123 Sum_probs=126.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC--CCHHHHHHHHHHHHhhccCCcchHHHhh
Q 006877 346 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIVN 423 (627)
Q Consensus 346 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~nLs~~~~~k~~i~~ 423 (627)
.|-..|.+.++..+.+|+..|......-+... ....-+..|+.++.+ .|......++..+..|...... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~-----~ 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF-----S 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC-----C
Confidence 45567888999999999999988775443221 222336677777655 3555555556666666532221 1
Q ss_pred cCChHHHHHH-HccC-----CHHHHHHHHHHHHHhcCCchhhHHhhh--hCcHHHHHHHhccC-CHHHHHHHHHHHHHhc
Q 006877 424 AGAIPDIVDV-LKNG-----SMEARENAAATLFSLSVIDENKVAIGA--AGAIPALIRLLCDG-TPRGKKDAATAIFNLS 494 (627)
Q Consensus 424 ~g~i~~Lv~l-L~~~-----~~e~~~~aa~~L~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~ 494 (627)
.+....+++. .++- ....|..+..+|..|..+ ....+.. .+.+..+++.+... ||+....+...+..+.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 1112333322 2222 345677777787777544 3333332 36788888888764 7988888888887776
Q ss_pred cCCCchHHHHHcCChHHHHHhhcc---------C-Ch-hh-HHH-HHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC
Q 006877 495 IYQGNKARAVRAGIVPPLMRFLKD---------A-GG-GM-VDE-ALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS 561 (627)
Q Consensus 495 ~~~~~~~~l~~~g~v~~Lv~lL~~---------~-~~-~~-~~~-Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~ 561 (627)
..-+. ...++-+-+.+.. + ++ .+ .+. ..+....++.++.- ..-++|.|++-|.+++
T Consensus 153 ~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~ 221 (262)
T PF14500_consen 153 QEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTS 221 (262)
T ss_pred Hhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCC
Confidence 53331 2233333333321 1 21 12 222 23333344444321 1247999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCH
Q 006877 562 PRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 562 ~~~~~~A~~~L~~L~~~~~ 580 (627)
+.+|..+..+|...+...+
T Consensus 222 ~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 222 PSVKLDSLQTLKACIENYG 240 (262)
T ss_pred cHHHHHHHHHHHHHHHHCC
Confidence 9999999999988776543
No 284
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.85 E-value=4.2 Score=46.65 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=99.8
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHH-H-cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhh-HH
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV-R-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEG-KT 542 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~-~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~-~~ 542 (627)
..+|.|+....+.+...+.+=+.+|.+...+-+. ..+. + ....|.|++-|.-++..++-.++.++..+...... ..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 5778888888765556667778888887765433 2222 2 35678888888888988888888888877664332 22
Q ss_pred HHhhCCChHHHHHHHhcCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHH
Q 006877 543 AIGQAEPIPVLMEVIRTGS---PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSI 613 (627)
Q Consensus 543 ~i~~~g~v~~Lv~lL~~~~---~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~l 613 (627)
.-+ .-.+|.++.+=.+.+ ..+|+.|...|..|...-|...-.-.+..++..|...+.+..--+|+.|...
T Consensus 946 ~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 EHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 212 235677776665443 5689999999999999555433334444577888888877777777777654
No 285
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.50 E-value=15 Score=42.70 Aligned_cols=184 Identities=12% Similarity=0.112 Sum_probs=116.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHcC
Q 006877 429 DIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRAG 507 (627)
Q Consensus 429 ~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g 507 (627)
.+-.-+.+..+.-+..|+.-+................|.+-.++.... +.+..+...|+..|..|+..-..-..=...+
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 333444455666677777666554433321111111244444444433 3467788888888888876432223333457
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHH
Q 006877 508 IVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIA 586 (627)
Q Consensus 508 ~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~ 586 (627)
+.+.+++-+.+....+.+.++.++-..+... .-....+.+...+.+++|..+..+...+.......+ .....-
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 7889999998888888888888776666511 112356778888999999999988777776555443 222222
Q ss_pred HHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 587 RELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 587 ~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
--.++++.++....+.+..++..|..++.-+-
T Consensus 411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 22357888888888889999999887766543
No 286
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.44 E-value=9.2 Score=45.21 Aligned_cols=131 Identities=24% Similarity=0.221 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHH
Q 006877 353 NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV 431 (627)
Q Consensus 353 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv 431 (627)
.++|+.|..|.-+|..+..-+.+.. ....|.|+..+. ++++.+|.+++.+++.|+..-+| ++ .-.-+.+-
T Consensus 934 ~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn---li-e~~T~~Ly 1004 (1251)
T KOG0414|consen 934 FSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN---LI-EPWTEHLY 1004 (1251)
T ss_pred CCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc---cc-chhhHHHH
Confidence 3578999999889988875443322 234799999997 78999999999999998764222 11 11345667
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 006877 432 DVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 432 ~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 496 (627)
+.|+..++.+|+.|.-+|.+|-.++. |--.|.++-+...+.+++.++...|=.....|+.-
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 77888899999999999999977652 33349999999999999988877776666666653
No 287
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=85.38 E-value=43 Score=33.57 Aligned_cols=163 Identities=14% Similarity=0.168 Sum_probs=95.9
Q ss_pred CChHHHHHHHccC--CHHHHHHHHHHHHHhcCCch--------hhHHhhhhCcHHHHHHHhccCC----HHHHHHHHHHH
Q 006877 425 GAIPDIVDVLKNG--SMEARENAAATLFSLSVIDE--------NKVAIGAAGAIPALIRLLCDGT----PRGKKDAATAI 490 (627)
Q Consensus 425 g~i~~Lv~lL~~~--~~e~~~~aa~~L~~Ls~~~~--------~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~aL 490 (627)
|..+.+..++-.| +...-+.+..+|..|....+ .+-.+.-.+.+|.++.-+.+++ ......++..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 6677777776555 34566667777777754432 2222222366777777777766 24455677888
Q ss_pred HHhccCCCchHHHHHcCChHHHHHhhcc-CC---hhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHH
Q 006877 491 FNLSIYQGNKARAVRAGIVPPLMRFLKD-AG---GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRE 566 (627)
Q Consensus 491 ~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-~~---~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~ 566 (627)
..+|...+ .+.+..++..... .. .+....++..|..-.. |+. +...+..|+++|.++.+..|.
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHH
Confidence 88874321 1123333333322 22 2233333333332221 111 124577899999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC
Q 006877 567 NAAAVLWAICTGDAEQLKIARELDAEEALKELSESG 602 (627)
Q Consensus 567 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~ 602 (627)
....+|..+-..-+-... ....++.+|.++++++
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD 240 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc
Confidence 999999988775432222 4445788999998766
No 288
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.67 E-value=0.67 Score=46.02 Aligned_cols=47 Identities=23% Similarity=0.466 Sum_probs=37.6
Q ss_pred CCCCCccCCCCccccc---CceeccCcccccHHHHHHHHHhCC--CCCCCcc
Q 006877 245 VIPDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGH--KTCPKTQ 291 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~---dPv~~~cg~t~~r~ci~~~~~~~~--~~CP~~~ 291 (627)
....-|.||+..+.-. -||.++|||..-...+.+.-+.|. +.||.|-
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3456799999888664 588899999999999888776664 6799995
No 289
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.60 E-value=0.42 Score=53.80 Aligned_cols=44 Identities=20% Similarity=0.493 Sum_probs=36.9
Q ss_pred CCCCCccCCCCcccccCcee-ccCcccccHHHHHHHHHhCCCCCCCccc
Q 006877 245 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQ 292 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~ 292 (627)
.+-..-.|..|...+.-|++ ..|||.|.+.|.+ .+...||.|..
T Consensus 836 ~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred ceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 34445689999999999987 5999999999987 46788999975
No 290
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=84.51 E-value=54 Score=34.12 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=112.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhh-hChhhHHHHHhc-CC-HHHHHHHhcCC-----C--------HHHHHHHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAK-RNADNRVCIAEA-GA-IPLLVELLSST-----D--------PRTQEHAVT 406 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~-~~~~~r~~i~~~-g~-i~~Lv~lL~~~-----~--------~~~~~~A~~ 406 (627)
.++.+-+.|++.....+..+++.|..+.. .+......+... +. .+.|.+++... + +.+|.+.+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 46777888888888888889999999887 665555554443 43 56677777431 1 288888888
Q ss_pred HHHhhcc--CCcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHH-hcCCc----hhhHHhhhhCcHHHHHHHhccC
Q 006877 407 ALLNLSI--NDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFS-LSVID----ENKVAIGAAGAIPALIRLLCDG 478 (627)
Q Consensus 407 ~L~nLs~--~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~-Ls~~~----~~~~~i~~~g~i~~Lv~lL~~~ 478 (627)
.+..+.. ++..+..+. ..+.+..+.+-|..+.+++......+|.. +..++ ..|..+....++..|+.+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 7777654 345566666 56678889999999889999888888874 33332 3456666678889999977766
Q ss_pred CH----HHHHHHHHHHHHhccCCCc
Q 006877 479 TP----RGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 479 ~~----~~~~~a~~aL~nL~~~~~~ 499 (627)
++ .+...+-..|..+|.++..
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCCc
Confidence 55 7778888888888876553
No 291
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.90 E-value=0.48 Score=48.39 Aligned_cols=44 Identities=18% Similarity=0.539 Sum_probs=35.2
Q ss_pred CCccCCCCccccc-Cce---eccCcccccHHHHHHHHHh-CCCCCCCcc
Q 006877 248 DDFRCPISLELMK-DPV---IVSTGQTYERSCIQKWLDA-GHKTCPKTQ 291 (627)
Q Consensus 248 ~~f~Cpic~~~m~-dPv---~~~cg~t~~r~ci~~~~~~-~~~~CP~~~ 291 (627)
-++.|..|++.+- .|- .+||.|.|.-.|.+.++.. +..+||.|+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3578999998762 222 3799999999999999974 568999998
No 292
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=83.15 E-value=46 Score=37.70 Aligned_cols=158 Identities=23% Similarity=0.188 Sum_probs=98.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHH-HccCCHHHHHHHHHHHHHhcCCchhhHHh
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVAI 462 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l-L~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 462 (627)
++=+.+-+++.+.|+-+|...+.++..--... ...++|..|+++ .++.+.+++..|.-+|.-....+.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp----- 587 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP----- 587 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh-----
Confidence 34444555677778888877665553221111 134567777777 566789999999999876655543
Q ss_pred hhhCcHHHHHHHhccC-CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hh-
Q 006877 463 GAAGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QE- 539 (627)
Q Consensus 463 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~- 539 (627)
...+..+.+|... ++.++.-++.+|.--|....++..+ ..|-.+..++..-++..|+-+++.+... .+
T Consensus 588 ---~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 588 ---EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred ---hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 2567778888654 7889999999999888877766543 3444555566666777777777766542 11
Q ss_pred hHHHHhhCCChHHHHHHHhcCCHH
Q 006877 540 GKTAIGQAEPIPVLMEVIRTGSPR 563 (627)
Q Consensus 540 ~~~~i~~~g~v~~Lv~lL~~~~~~ 563 (627)
....+ .++...+.+++...+..
T Consensus 659 ~~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 659 LCPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred cCchH--HHHHHHHHHHhhhhhhH
Confidence 11111 13455666666554433
No 293
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.64 E-value=29 Score=39.54 Aligned_cols=167 Identities=21% Similarity=0.191 Sum_probs=91.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhccCC-cchHHHhhcCChHHHHHHHcc----CCHHHHHHHHHHHHHhcC----C
Q 006877 385 AIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPDIVDVLKN----GSMEARENAAATLFSLSV----I 455 (627)
Q Consensus 385 ~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~----~~~e~~~~aa~~L~~Ls~----~ 455 (627)
++..+.+++.++...-.+ |...|..|.... ..- ...+..+..+++. .++.++..|.-+++.|.. .
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 566677777775433333 445555554321 111 1234555556553 345667777766666632 2
Q ss_pred c------hhhHHhhhhCcHHHHHHHhc----cCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccC---Chh
Q 006877 456 D------ENKVAIGAAGAIPALIRLLC----DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA---GGG 522 (627)
Q Consensus 456 ~------~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~---~~~ 522 (627)
. ..+.......+++.|...+. .++...+..++.||+|+-.. ..++.|..++... +..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchH
Confidence 1 11122222356666666665 35667788899999999642 3677888888665 455
Q ss_pred hHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC--CHHHHHHHHHHHHH
Q 006877 523 MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWA 574 (627)
Q Consensus 523 ~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~A~~~L~~ 574 (627)
++..|+.+|..++..... .+.+.|+.+..+. ++++|..|..+|..
T Consensus 540 ~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 667778777776554321 2456677777653 46788877766644
No 294
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.37 E-value=1.3 Score=38.58 Aligned_cols=50 Identities=14% Similarity=0.294 Sum_probs=40.8
Q ss_pred CCccCCCCcccccCceec----cCcccccHHHHHHHHHh--CCCCCCCccccccCC
Q 006877 248 DDFRCPISLELMKDPVIV----STGQTYERSCIQKWLDA--GHKTCPKTQQTLLHT 297 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~----~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~~~ 297 (627)
.-+.|.||++.-.|+..+ .||-..|..|.-..|+- -+..||+|..++...
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 467899999999888876 49999999999888874 357899998877544
No 295
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=82.05 E-value=1.2 Score=45.35 Aligned_cols=61 Identities=16% Similarity=0.348 Sum_probs=45.0
Q ss_pred CCCCCccCCCCcccccCcee-ccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHH
Q 006877 245 VIPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 312 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 312 (627)
...+-+.||+|.+.|.-|+. -.-||.-|..|=.+ -...||.|+.++.+ +.+.++..+++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence 34566889999999999964 35689999998543 34579999988862 3566776666543
No 296
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.04 E-value=75 Score=37.30 Aligned_cols=134 Identities=19% Similarity=0.197 Sum_probs=85.4
Q ss_pred cCCHHHHHHHhcC--------CCHHHHHHHHHHHHhhcc----CCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHH
Q 006877 383 AGAIPLLVELLSS--------TDPRTQEHAVTALLNLSI----NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLF 450 (627)
Q Consensus 383 ~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~ 450 (627)
.|.++.+++.|.+ .++.-.+-|+.++++|+. ....+. .++.=.++.+.-.+++...-.+..|+|++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 4678888888872 255566778888888863 222222 233334556666678888889999999999
Q ss_pred HhcCCchhhHHhhhhCcHHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHc---CChHHHHHhhcc
Q 006877 451 SLSVIDENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRA---GIVPPLMRFLKD 518 (627)
Q Consensus 451 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~---g~v~~Lv~lL~~ 518 (627)
..+..+ .+..-.-..++....+.|. +.+..++..|+-||..+..+.+....-++. +.++.|+.+...
T Consensus 488 ~~~~~d-f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 488 QFSSID-FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHhcc-CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 998543 2222223345666666676 556788899999999887765543222332 344455555544
No 297
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=81.80 E-value=0.58 Score=39.80 Aligned_cols=33 Identities=24% Similarity=0.546 Sum_probs=26.8
Q ss_pred CCCCCccCCCCcccccCcee--ccCcccccHHHHH
Q 006877 245 VIPDDFRCPISLELMKDPVI--VSTGQTYERSCIQ 277 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~--~~cg~t~~r~ci~ 277 (627)
.+.++-.|++|++.+.+++. .||||.|...|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 45667789999998876665 4999999999975
No 298
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.55 E-value=18 Score=40.62 Aligned_cols=126 Identities=18% Similarity=0.111 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCC
Q 006877 441 ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAG 520 (627)
Q Consensus 441 ~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~ 520 (627)
+...+++.+.+|-..+..-. .-.|.+..+++-..+++..++...+..|.-|.........-+-.+....+..-+.+..
T Consensus 62 Il~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre 139 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE 139 (892)
T ss_pred HHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence 34444555555533322111 2235566666666777889999999999999886555666777788888888898989
Q ss_pred hhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHH
Q 006877 521 GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVL 572 (627)
Q Consensus 521 ~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L 572 (627)
+.++..|+.+|..+-..+..- +..++..++.++++ +++++|..|...+
T Consensus 140 p~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 140 PNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred chHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 999999999999988543211 12456778888886 5688888765544
No 299
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=81.16 E-value=0.98 Score=43.02 Aligned_cols=57 Identities=25% Similarity=0.394 Sum_probs=42.7
Q ss_pred CccCCCCcccccCcee-ccCcccccHHHHHHHHHh-CCCCCCC--ccccccCCCCCccHHH
Q 006877 249 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDA-GHKTCPK--TQQTLLHTALTPNYVL 305 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~-~~cg~t~~r~ci~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l 305 (627)
+.+|||+.....-|.+ ..|+|.|++..|+.++.. -...||. |.+......+.-.+.+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 4689999999888976 589999999999999872 2356885 7666665555544433
No 300
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.96 E-value=11 Score=33.54 Aligned_cols=73 Identities=27% Similarity=0.305 Sum_probs=61.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChh-hHHHHHhcCCHHHHHHHhcC---CCHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS---TDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~A~~~L~nLs~ 413 (627)
...+..|.+.|+++++.+|..|+..|-.+.+++.. ....+....++..|++++.. .++.++..++..+.+.+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999987655 55667776888889999975 488899999998888754
No 301
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.82 E-value=11 Score=34.02 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=62.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~ 413 (627)
..++..+.+.|.++++.+|..|+..|-.+.+++ ......+...+++..|++++.. .++.++..++..+.+-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999874 4456677788999999999974 688899999998887753
No 302
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.22 E-value=15 Score=43.53 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=102.8
Q ss_pred ChHHHHHHHcc----CCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCc
Q 006877 426 AIPDIVDVLKN----GSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 426 ~i~~Lv~lL~~----~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~ 499 (627)
..|.+++..++ ++++++..|.-+|+.+...+ .++. ..+|.|+..+. ++++.++.++..+++.|+..-+|
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34455566643 36888888888887764322 2222 36899999997 67899999999999999876554
Q ss_pred hHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 006877 500 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~ 579 (627)
-..- .-+.|...|.++++.++..|+-+|..|-.+.-.+ -.|-++-+...|.+++++++.-|-...-.|...+
T Consensus 995 lie~----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 995 LIEP----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred ccch----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 3322 3456888889999999999999999998764322 2488999999999999999988885555555543
No 303
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.95 E-value=1.2 Score=45.58 Aligned_cols=52 Identities=29% Similarity=0.473 Sum_probs=42.9
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCc
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTP 301 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~ 301 (627)
...|.+++..+.+||.+..|..|+-..|-+|++ .+.+-|.+++++...++++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lk-k~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLK-KHGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHH-HcCCCCCCCCcccccccee
Confidence 668999999999999999999999999999998 4455677777776555543
No 304
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.89 E-value=90 Score=35.22 Aligned_cols=132 Identities=19% Similarity=0.101 Sum_probs=77.2
Q ss_pred ChHHHHHHHccC----CHHHHHHHHHHHHHhc----CCchhhHHhhhhCcHHHHHHHhcc----CCHHHHHHHHHHHHHh
Q 006877 426 AIPDIVDVLKNG----SMEARENAAATLFSLS----VIDENKVAIGAAGAIPALIRLLCD----GTPRGKKDAATAIFNL 493 (627)
Q Consensus 426 ~i~~Lv~lL~~~----~~e~~~~aa~~L~~Ls----~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~aL~nL 493 (627)
.+..+.+++.++ ...++..|.-++++|. ...+.+........++.|...|.. ++..-+..++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 456667777654 3456666666666553 222211111223466666666643 3455566788888888
Q ss_pred ccCCCchHHHHHcCChHHHHHhhc-c--CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc--CCHHHHHHH
Q 006877 494 SIYQGNKARAVRAGIVPPLMRFLK-D--AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT--GSPRNRENA 568 (627)
Q Consensus 494 ~~~~~~~~~l~~~g~v~~Lv~lL~-~--~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~A 568 (627)
... ..++.|..++. + .+..++..|+.+|..++..... .+-+.++.+..+ .++++|..|
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHH
Confidence 753 24556666665 2 3456778899999888752211 245566666665 346777777
Q ss_pred HHHHHH
Q 006877 569 AAVLWA 574 (627)
Q Consensus 569 ~~~L~~ 574 (627)
+.+|..
T Consensus 537 ~~~lm~ 542 (574)
T smart00638 537 VLVLME 542 (574)
T ss_pred HHHHHh
Confidence 766644
No 305
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.79 E-value=1.3e+02 Score=35.33 Aligned_cols=288 Identities=14% Similarity=0.138 Sum_probs=153.4
Q ss_pred CCccHHHHhhhHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccHhHHHHHHHHhc------C--CCHHHHHHHHHHHHHHh
Q 006877 299 LTPNYVLKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAIDALLGKLA------N--GNVEEQRAAAGELRLLA 370 (627)
Q Consensus 299 l~~n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~------s--~~~~~~~~a~~~L~~L~ 370 (627)
..|..+-...+-..+.+.|.+.- .+.++.++.-+. . .++.....|++.+..++
T Consensus 386 ~sp~~Aa~~~l~~~~~KR~ke~l-------------------~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~ 446 (1010)
T KOG1991|consen 386 YSPDTAALDFLTTLVSKRGKETL-------------------PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA 446 (1010)
T ss_pred CCCcHHHHHHHHHHHHhcchhhh-------------------hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH
Confidence 34555555555566665544311 235566666665 1 23444556667776665
Q ss_pred hh---ChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhcc-CCcchHHHhhcCChHHHHHHHc-cCCHHHHHHH
Q 006877 371 KR---NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLK-NGSMEARENA 445 (627)
Q Consensus 371 ~~---~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~a 445 (627)
.- ....+ ...+.=.++.++..++++---+|..|||++...+. +=.+.... ..+++.....|. +....++..|
T Consensus 447 ~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeA 523 (1010)
T KOG1991|consen 447 SILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEA 523 (1010)
T ss_pred HHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHH
Confidence 21 11111 22333345667777888888899999999999873 32222222 234677777777 5567889999
Q ss_pred HHHHHHhcCCch-hhHHhhhh--CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH-HHHH--cCChHHHHHhhcc-
Q 006877 446 AATLFSLSVIDE-NKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA-RAVR--AGIVPPLMRFLKD- 518 (627)
Q Consensus 446 a~~L~~Ls~~~~-~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~-~l~~--~g~v~~Lv~lL~~- 518 (627)
+-+|..+-.+.. ....+... +.+..|+.+.+.-+.+.....+..+. +...+... ..++ .......++++..
T Consensus 524 alALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~ 601 (1010)
T KOG1991|consen 524 ALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTS 601 (1010)
T ss_pred HHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhcc
Confidence 999988866654 44555554 66677777776644333333333221 11111111 1111 2344455566652
Q ss_pred --CC---hhhHHHHHHHHHHHhc---ChhhHHHHhh---CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHH-----
Q 006877 519 --AG---GGMVDEALAILAILAS---HQEGKTAIGQ---AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ----- 582 (627)
Q Consensus 519 --~~---~~~~~~Al~~L~~L~~---~~~~~~~i~~---~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~----- 582 (627)
.+ .+-...|+++|..+.+ +-+....+.. .-+++.+-.+|++.-.+.-+.+..+...+....++.
T Consensus 602 ~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW 681 (1010)
T KOG1991|consen 602 EDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW 681 (1010)
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH
Confidence 12 2223345555554443 2223333322 234555556666666677778888887777655321
Q ss_pred ------HHHHHHcC------cHHHHHHhhhcCChHHHHHH
Q 006877 583 ------LKIARELD------AEEALKELSESGTDRAKRKA 610 (627)
Q Consensus 583 ------~~~~~~~g------~i~~L~~l~~~~~~~~k~~A 610 (627)
...+.+.| .++.|-..+..|++......
T Consensus 682 ~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~ 721 (1010)
T KOG1991|consen 682 GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNP 721 (1010)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccc
Confidence 12222222 34555556666766555444
No 306
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=79.68 E-value=81 Score=33.95 Aligned_cols=145 Identities=16% Similarity=0.064 Sum_probs=91.0
Q ss_pred cHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHH-HHHHHhcChhhHHHH
Q 006877 467 AIPALIRLLCD-GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALA-ILAILASHQEGKTAI 544 (627)
Q Consensus 467 ~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~-~L~~L~~~~~~~~~i 544 (627)
.+..+++.|.+ .+...++.|++.|..++.+...+-.=-..-+|..+++.-.+..+++...|.. ++..++++..-+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 34566777776 5677889999999999987654432112234666666666655555544443 344555543222
Q ss_pred hhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 545 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 545 ~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
.|..+..++.+.+...--.++..+..++..-+..--.-+-..+.|.+++-..+....+|+.|..+|-.|.
T Consensus 407 ----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 ----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 3555666666655545555666777777654322211223368899999999999999999998887664
No 307
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=79.57 E-value=25 Score=37.76 Aligned_cols=261 Identities=13% Similarity=0.040 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----C-CcchHHHhhcCChHH
Q 006877 356 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-----N-DSNKGTIVNAGAIPD 429 (627)
Q Consensus 356 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~-----~-~~~k~~i~~~g~i~~ 429 (627)
..++.+++..|..++.+-.-.+..+++.| ..+..-+...++.++.++..++..+-. + ++..+.-...|.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~--RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLMELG--RVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 45788899999988875544455554432 334445566789999999999888742 1 222221112221211
Q ss_pred HH------HHH-ccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHh----ccCCHHHHHHHHHHHHHhccCCC
Q 006877 430 IV------DVL-KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL----CDGTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 430 Lv------~lL-~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~aL~nL~~~~~ 498 (627)
+. ..+ ++..+..+..++-++.+++....+.-- .|-=..++.++ ++.+.-++..|.+++.-+..++.
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lp---n~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~ 423 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLP---NDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC 423 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCC---CcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence 11 111 111122344555555555432110000 00000111111 11223345566777777777776
Q ss_pred chHHH-HHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-----ChhhH--HHHhhCCChHHHHHHHh---cCCHHHHHH
Q 006877 499 NKARA-VRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-----HQEGK--TAIGQAEPIPVLMEVIR---TGSPRNREN 567 (627)
Q Consensus 499 ~~~~l-~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-----~~~~~--~~i~~~g~v~~Lv~lL~---~~~~~~~~~ 567 (627)
-+... .-..+....+..|.+..-..++++.+.++|++. .|..+ ..-+..-.+..++..-. ...++++.+
T Consensus 424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~n 503 (728)
T KOG4535|consen 424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSN 503 (728)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 65532 234555566666766667788999999999876 12212 11111111222222221 245789999
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHcCcHHHHH-HhhhcCChHHHHHHHHHHHHHHhHH
Q 006877 568 AAAVLWAICTGDAE---QLKIARELDAEEALK-ELSESGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 568 A~~~L~~L~~~~~~---~~~~~~~~g~i~~L~-~l~~~~~~~~k~~A~~lL~~l~~~~ 621 (627)
|+..|.|+..--.. ........|.+..+. ...-.+.-.++=+|..++.+|-++.
T Consensus 504 avraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 504 AVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 99999987652211 011111222233332 3344557788889999999986543
No 308
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=79.10 E-value=0.59 Score=55.06 Aligned_cols=45 Identities=24% Similarity=0.585 Sum_probs=38.5
Q ss_pred CCCCccCCCCccccc-CceeccCcccccHHHHHHHHHhCCCCCCCcc
Q 006877 246 IPDDFRCPISLELMK-DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQ 291 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~-dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~ 291 (627)
....+.|+||++.++ ---+..|||-||..|+..|.. .+..||.|.
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~k 1195 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICK 1195 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchh
Confidence 345679999999998 556789999999999999998 566799997
No 309
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=79.09 E-value=11 Score=42.35 Aligned_cols=135 Identities=14% Similarity=0.169 Sum_probs=94.9
Q ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHH-HccCCHHHHHHHHHHHHHhcCCchhhH
Q 006877 382 EAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKV 460 (627)
Q Consensus 382 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l-L~~~~~e~~~~aa~~L~~Ls~~~~~~~ 460 (627)
...++|.|..-+++.+..+|+.++..+-.++..-+ ...+..-++|.|-.+ +++....++.+++.++..+. +...
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD 461 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLD 461 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHH
Confidence 35678899999999999999999999998876433 334445567777665 34557888999999998887 2222
Q ss_pred HhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCCh
Q 006877 461 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG 521 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~ 521 (627)
...-..-+.++..-.+..++......+.+..++.....+...+..+.++|.++.+...+.-
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccc
Confidence 2222244455555555678888888888888888766655555567788888888766443
No 310
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=79.02 E-value=5.7 Score=45.62 Aligned_cols=147 Identities=18% Similarity=0.199 Sum_probs=102.7
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh--hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhH
Q 006877 383 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKV 460 (627)
Q Consensus 383 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~ 460 (627)
...+|.|++.........+.+-+.+|.++-.+ -.+..+. -+..+|.|++.|+-.+..++-.+..++..+......-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~-vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTN-VPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhc-CCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 36789999988866666777777777777554 2234444 25678889999998898888888887765532221111
Q ss_pred HhhhhCcHHHHHHHhccCC---HHHHHHHHHHHHHhcc-CCCchHHHHHcCChHHHHHhhccCChhhHHHHHHH
Q 006877 461 AIGAAGAIPALIRLLCDGT---PRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAI 530 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~~~---~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~ 530 (627)
.-.-.-.+|.++.+=.+.+ .-++..|+..|..|.. .+.+.-.-.+..++..|.+.|+++..-+++.|+.+
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1111245666666655543 5678999999999998 56666666677789999999998877788777654
No 311
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.98 E-value=16 Score=33.57 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=77.0
Q ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhh
Q 006877 385 AIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 463 (627)
Q Consensus 385 ~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~ 463 (627)
.++.|+++|+.+ +..+|..++.+|+.|-.-+..+-+....+ .+.-. -...+....... +.+... ........
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~-~~~~~--~~~~~~~~~~~~---l~~~~~-~~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS-LDSKS--SENSNDESTDIS---LPMMGI-SPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc-CCccc--cccccccchhhH---HhhccC-CCchHHHH
Confidence 356778888775 68999999999999954444433322111 01000 001111111111 111111 01122233
Q ss_pred hhCcHHHHHHHhccCCH-HHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 006877 464 AAGAIPALIRLLCDGTP-RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA 535 (627)
Q Consensus 464 ~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~ 535 (627)
-..++..|+..|++.+- .-...++.++.++....+.+..-.=.-++|.++..+...+....+..+.-|+.|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33577889999988753 2334567777777644333332222357888999888766677777666665554
No 312
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=78.95 E-value=80 Score=32.22 Aligned_cols=200 Identities=13% Similarity=0.100 Sum_probs=143.1
Q ss_pred HHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCC-cchH----HHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 006877 379 CIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKG----TIV-NAGAIPDIVDVLKNGSMEARENAAATLFSL 452 (627)
Q Consensus 379 ~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~-~~k~----~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~L 452 (627)
.+..+|..+.|++.|...+-+.+..++.+..|+-... ..+. -+. ....+..++.--.. .+++.-.+-..|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 3556799999999999999999999888888875421 2221 111 23444444444111 466666666777777
Q ss_pred cCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC-CchHHHHHcC---C-hHHHHHhhccCChhhHHHH
Q 006877 453 SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-GNKARAVRAG---I-VPPLMRFLKDAGGGMVDEA 527 (627)
Q Consensus 453 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~~~~~l~~~g---~-v~~Lv~lL~~~~~~~~~~A 527 (627)
...+.....|..+..+......+..++-++..+|..+...+.... .....+...+ . .+.--.++.+++--+...+
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 777777888888888888889999898899999999999876643 3444555433 2 3335566777777788889
Q ss_pred HHHHHHHhcChhhHHHHhh----CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 006877 528 LAILAILASHQEGKTAIGQ----AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 528 l~~L~~L~~~~~~~~~i~~----~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~ 579 (627)
...|+.+-....+...|.. ...+..+..+|+..+..+|-.|.-+-.-...+.
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 9999988876666555543 356888999999999999999998888776654
No 313
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.37 E-value=11 Score=38.03 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=93.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
...+...+..|.+.+|+....++..|+.|+.-.++...... ...|..+++-+++....+-..|+.++..+...-.+ .
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~ 163 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S 163 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence 35778889999999999999999999999875554333332 24567778888888888989999999888654222 2
Q ss_pred HhhcCChHHHHHH-HccC---CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 006877 421 IVNAGAIPDIVDV-LKNG---SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 493 (627)
Q Consensus 421 i~~~g~i~~Lv~l-L~~~---~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 493 (627)
|.+ .++.++.. |..+ +.-+++.|-.+|..+...-. ...+++.|+..+.+.++.++..++....+.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt------p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT------PQKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 222 23444433 3332 34577777777766643211 123566777777777777766665554443
No 314
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.37 E-value=6.8 Score=32.36 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=56.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~ 413 (627)
......+..+.+..+.++-.++..|+.+..... ...+-..+++..+...|+++|+-+--+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 456778888888888999999999999997655 2222234677788889999999999999999998875
No 315
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.18 E-value=1e+02 Score=36.65 Aligned_cols=221 Identities=20% Similarity=0.207 Sum_probs=126.2
Q ss_pred cHhHHHHHHHHhcCCC------------HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-------C---C
Q 006877 340 DRAAIDALLGKLANGN------------VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-------T---D 397 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~------------~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-------~---~ 397 (627)
+...+-.++..|+++- ..........++....-+...+..+.++|+...|...|.. . |
T Consensus 718 hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesD 797 (2799)
T KOG1788|consen 718 HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESD 797 (2799)
T ss_pred cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchh
Confidence 3455666777777631 1122334455555555566778889999988888877732 1 2
Q ss_pred HHHHHHHHHHHHhh-----ccCCcchHHHhhcCChHHHHHHHccCC---HHHHHHHHHHHHHhcCCchhhHHhhhhCcHH
Q 006877 398 PRTQEHAVTALLNL-----SINDSNKGTIVNAGAIPDIVDVLKNGS---MEARENAAATLFSLSVIDENKVAIGAAGAIP 469 (627)
Q Consensus 398 ~~~~~~A~~~L~nL-----s~~~~~k~~i~~~g~i~~Lv~lL~~~~---~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~ 469 (627)
.-+-..-..+|..+ +.++.|+..+-..-.-+.+.++|+... .+........|..+ ++.
T Consensus 798 lcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllEl--------------ale 863 (2799)
T KOG1788|consen 798 LCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLEL--------------ALE 863 (2799)
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHH--------------HHH
Confidence 11122223333322 234455544433323344555554321 11111111111111 111
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccC-----------CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-C
Q 006877 470 ALIRLLCDGTPRGKKDAATAIFNLSIY-----------QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-H 537 (627)
Q Consensus 470 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~-----------~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~ 537 (627)
.+..+....-..|+..++.+-.+ ...+.++..+|++..|...+-...+.++-.-+..+..+++ +
T Consensus 864 ----vlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRas 939 (2799)
T KOG1788|consen 864 ----VLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARAS 939 (2799)
T ss_pred ----hhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC
Confidence 11111112222344445444321 2245678899999999999988899999999999999988 5
Q ss_pred hhhHHHHhhCCChHHHHHHHh---cCCHHHHHHHHHHHHHHhcC
Q 006877 538 QEGKTAIGQAEPIPVLMEVIR---TGSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 538 ~~~~~~i~~~g~v~~Lv~lL~---~~~~~~~~~A~~~L~~L~~~ 578 (627)
+.+.......|++..|++++. +|+...-.+|.+++..||..
T Consensus 940 pfnaelltS~gcvellleIiypflsgsspfLshalkIvemLgay 983 (2799)
T KOG1788|consen 940 PFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAY 983 (2799)
T ss_pred CCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhc
Confidence 667777777899999999886 46666777888888877764
No 316
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.68 E-value=12 Score=41.89 Aligned_cols=107 Identities=17% Similarity=0.137 Sum_probs=71.6
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhC------CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHH
Q 006877 509 VPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA------EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ 582 (627)
Q Consensus 509 v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~------g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~ 582 (627)
...++++|.+.+-.++...+.+.+|+..+-....++.+. ..+..+++-+...+|-+|..|..++..++.-+...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 346778888888778888888999998754333333331 23455555556678999999999999888754321
Q ss_pred HHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 583 LKIARELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 583 ~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
.. ....++.....-+++.+..++++|..++.-|
T Consensus 381 ~~--~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 381 VG--RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cc--hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 11 1112344455667788889999998887644
No 317
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.57 E-value=15 Score=33.20 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=63.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChh-hHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~ 413 (627)
...+..+...|.+.++.+|..|+..|..+.+++.. ....+....++..|++++.. .++.++..++..+...+.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999987654 45567778999999999988 789999999998888764
No 318
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.52 E-value=99 Score=35.32 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=22.0
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 006877 508 IVPPLMRFLKDAGGGMVDEALAILAILASH 537 (627)
Q Consensus 508 ~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~ 537 (627)
.+--++.+|..++-++...++.+...|+++
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 344456667778888888888888877764
No 319
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=76.63 E-value=13 Score=32.93 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=59.1
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhc---CChHHHHHHHHHHHHHHhH
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSES---GTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~---~~~~~k~~A~~lL~~l~~~ 620 (627)
++..|-.-|.++++.++..|+.+|-.+..+.+. ....+.....+..|+.++.. .++.+++++..++......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 577788888899999999999999999999876 55666666777789999876 3688999999998877653
No 320
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.23 E-value=19 Score=31.91 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=60.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~ 413 (627)
..++..+.+.|+++++.+|..|+..|-.+.+++ ......+...+++..|++++... .+.++..++..+..-+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999874 44566777888999999999875 23488888888877653
No 321
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=76.10 E-value=6.2 Score=36.19 Aligned_cols=96 Identities=23% Similarity=0.191 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHhhhChhhHHHHH-hcCCHHHHHHHhc--CCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHH
Q 006877 355 NVEEQRAAAGELRLLAKRNADNRVCIA-EAGAIPLLVELLS--STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV 431 (627)
Q Consensus 355 ~~~~~~~a~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv 431 (627)
+.+....++..+..+--..++....+. ..|+++.++.+.. +++...+..++.+|..-+.+...|..|.+. +++.|-
T Consensus 56 ~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~ 134 (157)
T PF11701_consen 56 EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLK 134 (157)
T ss_dssp HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHH
T ss_pred cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHH
Confidence 344566777777777665555554444 5689999999998 778899999888776666666666666555 588898
Q ss_pred HHHccC-CHH-HHHHHHHHHHH
Q 006877 432 DVLKNG-SME-ARENAAATLFS 451 (627)
Q Consensus 432 ~lL~~~-~~e-~~~~aa~~L~~ 451 (627)
+.++.+ +.. ++..|+-.|..
T Consensus 135 ~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 135 ELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHccccchHHHHHHHHHHHhc
Confidence 988654 444 67777776654
No 322
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.68 E-value=1.6e+02 Score=33.92 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=98.6
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHH---
Q 006877 385 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVA--- 461 (627)
Q Consensus 385 ~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~--- 461 (627)
..+.+-..|++....+...|+.++.+|..-. ..+... ++..+--+|++...-+|-.|.++|..++........
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~---~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTN---SRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccC---Hhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 3456666778888999999999998886421 111112 566777777888888999999999998766543322
Q ss_pred ------hhhh---CcHHHHHHHhccCCHHHHH----HHHHHHHHhccCCCchHHHH-------------HcCChHHHHHh
Q 006877 462 ------IGAA---GAIPALIRLLCDGTPRGKK----DAATAIFNLSIYQGNKARAV-------------RAGIVPPLMRF 515 (627)
Q Consensus 462 ------i~~~---g~i~~Lv~lL~~~~~~~~~----~a~~aL~nL~~~~~~~~~l~-------------~~g~v~~Lv~l 515 (627)
|... =+-..+..+|+.|+..... .......+++. +++..++ ..+.+.-|..+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1111 1334455666766544333 33333334432 2221111 12334445555
Q ss_pred hcc-CChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 516 LKD-AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 516 L~~-~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
|.+ +.-+.+...+.++..+.. +++.+. .++..|.+++.+. +...-++.+|.-|...+|
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP 459 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGP 459 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCC
Confidence 543 233334445555544444 333331 2455555555422 234556666666665544
No 323
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=75.38 E-value=40 Score=37.97 Aligned_cols=254 Identities=15% Similarity=0.137 Sum_probs=145.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCC
Q 006877 347 LLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGA 426 (627)
Q Consensus 347 Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~ 426 (627)
++..+.-.+.+++.+-...|.. ..+..-+.++..-.+|.|+..+..++ .-...+..+..+...-.... ...++
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~---~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i 331 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLID---RLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRI 331 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccch
Confidence 3344444455555544444333 22333445566667788888777765 22333444444433211111 45678
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHc
Q 006877 427 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRA 506 (627)
Q Consensus 427 i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~ 506 (627)
++.|+++++..+..+|-.-+.-+-.. .+..-..+.....+|.+..-+.+.++-.++..+..+..|+..=..+ .+..
T Consensus 332 ~p~l~kLF~~~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~ 407 (690)
T KOG1243|consen 332 IPVLLKLFKSPDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNG 407 (690)
T ss_pred hhhHHHHhcCcchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcH
Confidence 99999999998887775433322222 1233445666788999999999999999999999988887532212 2222
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCC-hHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 006877 507 GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP-IPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKI 585 (627)
Q Consensus 507 g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~-v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 585 (627)
..+..+..+-.+.+..+.....-+|+.++.+-... ...++ +....+-+++.-...|..++.+++..+..-+..
T Consensus 408 Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~--- 481 (690)
T KOG1243|consen 408 ELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS--- 481 (690)
T ss_pred HHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh---
Confidence 23333444333455566666666666666542111 12222 233344455555667888888887777655321
Q ss_pred HHHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 586 ARELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 586 ~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
=+...+.+.+.-+..+.+.-++..|-..++..
T Consensus 482 ~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 482 EVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 12224666666666666666676666665544
No 324
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.08 E-value=27 Score=29.15 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=53.3
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHH
Q 006877 506 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 572 (627)
Q Consensus 506 ~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L 572 (627)
.+.+..|++.+..+.....+.++..|..|..++.+...+.+-|++..|-++-..-++..+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567778888877777789999999999999999999999999999877766656666665554444
No 325
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=75.04 E-value=3.7 Score=36.11 Aligned_cols=45 Identities=18% Similarity=0.486 Sum_probs=33.3
Q ss_pred CccCCCCcccccC--cee-ccCcc------cccHHHHHHHHHhCCCCCCCccccc
Q 006877 249 DFRCPISLELMKD--PVI-VSTGQ------TYERSCIQKWLDAGHKTCPKTQQTL 294 (627)
Q Consensus 249 ~f~Cpic~~~m~d--Pv~-~~cg~------t~~r~ci~~~~~~~~~~CP~~~~~l 294 (627)
...|.||.+...+ -|+ ++||. .||..|+.+|-. .....|.-|..-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I~ 79 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNIK 79 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccceE
Confidence 5579999987766 665 57874 599999999954 556677765443
No 326
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=74.70 E-value=3.5 Score=37.22 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=33.7
Q ss_pred CCccCCCCcccccCceeccCccc-----ccHHHHHHHHHh-CCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDPVIVSTGQT-----YERSCIQKWLDA-GHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t-----~~r~ci~~~~~~-~~~~CP~~~~~l~ 295 (627)
.+..|-||.+-.. +..-||..+ ..++|+++|+.. +...||.|+.+..
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4557999987653 334466532 378999999985 4578999998764
No 327
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.63 E-value=17 Score=32.69 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=59.7
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHhhhc-CChHHHHHHHHHHHHHHh
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQR 619 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~l~~~-~~~~~k~~A~~lL~~l~~ 619 (627)
.++..|.+-|.++++.++..|+.+|-.+..+.+ .....+.+.+.+..|..++.. ..+.+++++..++..-..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 467788888889999999999999999999854 456777788899999999875 468899999998887654
No 328
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=74.37 E-value=22 Score=31.86 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=59.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCHHHHHHHhcC------CCHHHHHHHHHHHHhhc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLS 412 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~nLs 412 (627)
..++..+.+.|++.++.++..|+..|-.+.+.. ......+...+++.-|++++.. .+..++...+..+..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999865 3456678888999999999963 46889998888877654
No 329
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.35 E-value=3.8 Score=42.62 Aligned_cols=34 Identities=18% Similarity=0.463 Sum_probs=27.2
Q ss_pred CCccCCCCccccc--Cce-eccCcccccHHHHHHHHH
Q 006877 248 DDFRCPISLELMK--DPV-IVSTGQTYERSCIQKWLD 281 (627)
Q Consensus 248 ~~f~Cpic~~~m~--dPv-~~~cg~t~~r~ci~~~~~ 281 (627)
.-|.|.||.+.-. +-. .+||+|.||++|...|+.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4688999987543 333 379999999999999997
No 330
>PRK14707 hypothetical protein; Provisional
Probab=73.79 E-value=2.8e+02 Score=35.96 Aligned_cols=267 Identities=15% Similarity=0.098 Sum_probs=136.8
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHh-hccCCcchHH
Q 006877 344 IDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLN-LSINDSNKGT 420 (627)
Q Consensus 344 i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~n-Ls~~~~~k~~ 420 (627)
+..++..++. .+....+.++..|..+....+..+..+-.. +|..+++-+ +-++...-.+|+..|.. |+.++..+..
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q-~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~ 243 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQ-GVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE 243 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccchH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh
Confidence 3444444432 222334455555544443344445444333 344444444 34544444455555554 4444333333
Q ss_pred HhhcCChHHHHHHHccC-CHHHHHHHHHHH-HHhcCCchhhHHhhhhCcHHHHHHHhc-cCCHHHHHHHHHHHH-HhccC
Q 006877 421 IVNAGAIPDIVDVLKNG-SMEARENAAATL-FSLSVIDENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIF-NLSIY 496 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~-~~e~~~~aa~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~-nL~~~ 496 (627)
+ +...+-..+..|..- +..+-.+++..| ..|+.....+..+...+. ...++-|. -.+..+-..|+..|. .|...
T Consensus 244 ~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~v-analNalSKwpd~~vc~~Aa~~la~rl~~d 321 (2710)
T PRK14707 244 L-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINV-TQALNALSKWADLPVCAEAAIALAERLADD 321 (2710)
T ss_pred C-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHH-HHHHhhhhcCCCchHHHHHHHHHHHHHhcc
Confidence 3 444455555555543 333444444443 455544344444433332 33333333 345555555555554 55554
Q ss_pred CCchHHHHHcCChHHHHHhhcc-CChh-hHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHH
Q 006877 497 QGNKARAVRAGIVPPLMRFLKD-AGGG-MVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLW 573 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL~~-~~~~-~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~ 573 (627)
++-+.. .+.-.+...+.-|+. ++.. ....|..+-..|+.+++-+..+-- .++...+.-|.- +...+...|+..|.
T Consensus 322 ~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 322 PELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-QGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred Hhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-hHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 443332 333344455555543 4444 444555555677777777766653 345555555543 44556666777776
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 574 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 574 ~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
.=..++++.+..+--.|+-..|--+.+=++..+...|...|.
T Consensus 400 ~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA 441 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALA 441 (2710)
T ss_pred HHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHH
Confidence 655567677776666677777777777777777777666554
No 331
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.65 E-value=21 Score=36.15 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=86.7
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHH
Q 006877 427 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV 504 (627)
Q Consensus 427 i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~ 504 (627)
+...+..|.+.+++....++..+..|+..+. +.+... ..|..+++-+++....+-+.|+.++..|...-.+...-
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~--e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHP--ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555666666777667777766665543 222221 56777777888877788888999988887654333322
Q ss_pred HcCChHHHHHhh-c---cCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 505 RAGIVPPLMRFL-K---DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 505 ~~g~v~~Lv~lL-~---~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
-...++..| . ..+.-+.+.|-.+|..+..+.... .+++.|...+++.+++++..++....+...
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 223333333 2 234456788888888777754322 356778888888888888887766555433
No 332
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.58 E-value=42 Score=38.05 Aligned_cols=125 Identities=22% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCHHHHHHH-hcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHH
Q 006877 384 GAIPLLVEL-LSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVA 461 (627)
Q Consensus 384 g~i~~Lv~l-L~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~~~~~~ 461 (627)
++|..|+.+ .++.|.++++.|+-+|+-+...+ ....+..|++|.. -++-+|.-+|-+|.--+....++.
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e- 624 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE- 624 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-
Confidence 455566555 45568889999999988876543 3456788888865 479999999999986665543333
Q ss_pred hhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC--CCchHHHHHcCChHHHHHhhccCChhhH
Q 006877 462 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY--QGNKARAVRAGIVPPLMRFLKDAGGGMV 524 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~~~~~~l~~~g~v~~Lv~lL~~~~~~~~ 524 (627)
++..|-.+..+...-++.-|+.++.-+... +.-+.+ -.|+...+.+.+.+.+.+..
T Consensus 625 -----Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 625 -----AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred -----HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhhhHHH
Confidence 344444444554455677777776654432 111111 13455667777766554433
No 333
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=73.49 E-value=1.4e+02 Score=32.26 Aligned_cols=187 Identities=17% Similarity=0.139 Sum_probs=104.7
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcch
Q 006877 342 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNK 418 (627)
Q Consensus 342 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k 418 (627)
..+..++..+... ..+.+..|+..|..+...+. ..+.... ...+..++..|+. .+..++..|+.+|..+..+...+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 4556666666544 46678888888877765542 2222211 1234567888877 78889999999999998764322
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHH-HHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAA-ATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa-~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
-.=-..-+|..+++.-.+...++...|. .++.-++..++.. .|..+..++.+.+....-.++..+..|+..-
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l 437 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERL 437 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc
Confidence 1111122445555554555454444343 3333344443322 2333444444444444444555555555321
Q ss_pred CchH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 006877 498 GNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 536 (627)
Q Consensus 498 ~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~ 536 (627)
..-. ..+=..+.|.+++--.+.+..++..|+.+|-.+..
T Consensus 438 ~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 438 SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 1111 11224678888888888888888888888876654
No 334
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=73.46 E-value=31 Score=31.67 Aligned_cols=141 Identities=11% Similarity=0.078 Sum_probs=80.0
Q ss_pred cHHHHHHHhccC-CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHh
Q 006877 467 AIPALIRLLCDG-TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG 545 (627)
Q Consensus 467 ~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~ 545 (627)
.++.|+++|+++ +..++..++++|+.|-.-+..+.+....+.-.. .-.+.+.......+ .+....+ .-++..
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~l---~~~~~~~-~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDISL---PMMGISP-SSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhHH---hhccCCC-chHHHH
Confidence 467788888876 588999999999999887776666443221100 00111111112111 1111111 222222
Q ss_pred hCCChHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 546 QAEPIPVLMEVIRTGS-PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 546 ~~g~v~~Lv~lL~~~~-~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
-..++..|+..|+..+ ..-+..++.++.++...-+..+..... .++|.++..+++.++..++.--.-|.
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~-~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP-QVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH-HHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2346788999998766 334556777777766443323322222 38999999999888766665444333
No 335
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.32 E-value=15 Score=33.08 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhc-CChHHHHHHHHHHHHHHh
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQR 619 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~-~~~~~k~~A~~lL~~l~~ 619 (627)
.++..|..-|.++++.++..|+.+|-.+..|.+. ....+.....+..|..++.. ..+.++.+...++....+
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3577788888889999999999999999998875 44667777899999999988 688999999998887753
No 336
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.27 E-value=1e+02 Score=34.70 Aligned_cols=171 Identities=12% Similarity=0.068 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCcchHHHh----hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcH
Q 006877 395 STDPRTQEHAVTALLNLSINDSNKGTIV----NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAI 468 (627)
Q Consensus 395 ~~~~~~~~~A~~~L~nLs~~~~~k~~i~----~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i 468 (627)
.-..+++--|+.+|.-+..+...-..+. ....+..++..+. +.+.-+..++++|.|+-.+..++..+... ..+
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESIL 633 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHh
Confidence 3355666666776666655543322222 1224445555444 55667788899999998887677666654 222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcc--CCCchHHHHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcChhhH
Q 006877 469 PALIRLLCDGTPRGKKDAATAIFNLSI--YQGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQEGK 541 (627)
Q Consensus 469 ~~Lv~lL~~~~~~~~~~a~~aL~nL~~--~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~L~~~~~~~ 541 (627)
.+++..=...+..++...+....|++. ...+-. .|..+.|...+.. .+-+..-..+-+|.+|+..+...
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 223222222234444444444446543 122111 4455555544432 23334556788889999988888
Q ss_pred HHHhhCCChHHHHHHHhc-CC-HHHHHHHHH
Q 006877 542 TAIGQAEPIPVLMEVIRT-GS-PRNRENAAA 570 (627)
Q Consensus 542 ~~i~~~g~v~~Lv~lL~~-~~-~~~~~~A~~ 570 (627)
..+.+.-.+..++.-++. .+ +..+..|-.
T Consensus 710 ~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred HHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 888777778888888875 33 444444444
No 337
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=73.21 E-value=1.1e+02 Score=30.79 Aligned_cols=214 Identities=17% Similarity=0.159 Sum_probs=119.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhh----ChhhHHHHHh------c-CCHHHHHHHhcCC--CHHHHHHHHHHHHhhcc
Q 006877 347 LLGKLANGNVEEQRAAAGELRLLAKR----NADNRVCIAE------A-GAIPLLVELLSST--DPRTQEHAVTALLNLSI 413 (627)
Q Consensus 347 Lv~~L~s~~~~~~~~a~~~L~~L~~~----~~~~r~~i~~------~-g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~ 413 (627)
-+..|.+....+-..|+..|..+... ++..+..+.+ . |..+.+..++-.+ .....+.++..|..|..
T Consensus 12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~ 91 (262)
T PF14225_consen 12 AVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTP 91 (262)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhc
Confidence 34555555555556666665554322 2223333221 1 4555555555443 44555667777777754
Q ss_pred CC--------cchHHHhhcCChHHHHHHHccCC----HHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCC--
Q 006877 414 ND--------SNKGTIVNAGAIPDIVDVLKNGS----MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT-- 479 (627)
Q Consensus 414 ~~--------~~k~~i~~~g~i~~Lv~lL~~~~----~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-- 479 (627)
.+ ++|-.+.--+.+|.++.-+.+++ .+....+|..|..++.... .+.+..++.....+.
T Consensus 92 ~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~fr 164 (262)
T PF14225_consen 92 LPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGRFR 164 (262)
T ss_pred CCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcCCC
Confidence 32 13333333456777777777776 1344566677776663211 123333333333332
Q ss_pred --HHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHH
Q 006877 480 --PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI 557 (627)
Q Consensus 480 --~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL 557 (627)
.+....++..|..-.. ++ .+...+..|+++|.++-+.++...+.+|..+-.+.+.+.. ...+.+.++++++
T Consensus 165 ~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL 237 (262)
T PF14225_consen 165 DKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLL 237 (262)
T ss_pred CHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHh
Confidence 3334444444443221 11 1234566789999888889999999999999887665544 3345789999999
Q ss_pred hcCCHHHHHHHHHHHHHHhc
Q 006877 558 RTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 558 ~~~~~~~~~~A~~~L~~L~~ 577 (627)
+++. -..|..+|-+...
T Consensus 238 ~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 238 QTDL---WMEALEVLDEIVT 254 (262)
T ss_pred CCcc---HHHHHHHHHHHHh
Confidence 8654 3456666655443
No 338
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.19 E-value=5 Score=31.44 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=22.9
Q ss_pred CccCCCCcccc-----cCceec--cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.-.|.||++-. -+|.+. .|+.-.||.|.+-=.+.|+..||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 45799998744 255443 588889999998888889999999986543
No 339
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=73.06 E-value=25 Score=29.43 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=55.8
Q ss_pred HHhh-hhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 006877 460 VAIG-AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 531 (627)
Q Consensus 460 ~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L 531 (627)
..+. ..+.+..|++.++..+......++..|..|..++.....+.+-|++.-|.++=...++..+...-.++
T Consensus 23 ~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 23 EDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344 34788899999988887788999999999999999999999999999877766555565555544444
No 340
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=72.83 E-value=1.1e+02 Score=36.50 Aligned_cols=225 Identities=15% Similarity=0.064 Sum_probs=125.6
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCC-HHHHHHHHHHHHHhcCCchhhHH
Q 006877 383 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGS-MEARENAAATLFSLSVIDENKVA 461 (627)
Q Consensus 383 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~e~~~~aa~~L~~Ls~~~~~~~~ 461 (627)
.+++..|...|++.|..++-.|+..++.++...+ ..+ ....|..+++++.-.. +..=..++-+|..|+.-.-....
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4677888899999999999999999999976543 111 2345677777655433 44455777777777643211110
Q ss_pred hhhhCcHHHHHHHhccC--------CHHHHHHHHHHHHHhccCCCch--HHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 006877 462 IGAAGAIPALIRLLCDG--------TPRGKKDAATAIFNLSIYQGNK--ARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 531 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~~--------~~~~~~~a~~aL~nL~~~~~~~--~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L 531 (627)
.. ..++|.++.-|... ...++..|+-+++.++..-+.. .-++..=+-..|..-+.+.+-.++..|.+++
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 00 03555555555432 2456778888888887642211 2222221222334445677777888888777
Q ss_pred HHHhcC----hhhHH----------------------HHhh-CCChHHHHHHHhcC---C--HHHHHHHHHHHHHHhcCC
Q 006877 532 AILASH----QEGKT----------------------AIGQ-AEPIPVLMEVIRTG---S--PRNRENAAAVLWAICTGD 579 (627)
Q Consensus 532 ~~L~~~----~~~~~----------------------~i~~-~g~v~~Lv~lL~~~---~--~~~~~~A~~~L~~L~~~~ 579 (627)
...... |.|-. .+.+ .|....+++-+-.. + ..+|+.|+.+|..|....
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~ 575 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE 575 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 655432 11111 1111 13334444433221 1 346777777777776665
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 580 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 580 ~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
|++ ...+..++|+.-...++...+.-+.-+..
T Consensus 576 pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ 607 (1133)
T KOG1943|consen 576 PKY----LADYVLPPLLDSTLSKDASMRHGVFLAAG 607 (1133)
T ss_pred HHh----hcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence 543 23356666666666666665555444433
No 341
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=72.69 E-value=3.9 Score=28.43 Aligned_cols=39 Identities=15% Similarity=0.448 Sum_probs=21.6
Q ss_pred CCCCcccccCceec---cCcccccHHHHHHHHHhCCC-CCCCc
Q 006877 252 CPISLELMKDPVIV---STGQTYERSCIQKWLDAGHK-TCPKT 290 (627)
Q Consensus 252 Cpic~~~m~dPv~~---~cg~t~~r~ci~~~~~~~~~-~CP~~ 290 (627)
|-+|.++...-+.= .|+-.+...|+..||..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 56677776655542 48878889999999985443 69986
No 342
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=72.52 E-value=2.3 Score=42.40 Aligned_cols=43 Identities=28% Similarity=0.696 Sum_probs=32.9
Q ss_pred CccCCCCcccc----cCceeccCcccccHHHHHHHHHhCCCCCCCccc
Q 006877 249 DFRCPISLELM----KDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQ 292 (627)
Q Consensus 249 ~f~Cpic~~~m----~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~ 292 (627)
++-||||.+.+ .+|...+|||+.-..|.+.....+ -+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 45599998866 466678999987666666666656 88999986
No 343
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.14 E-value=21 Score=40.17 Aligned_cols=127 Identities=20% Similarity=0.130 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc
Q 006877 480 PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT 559 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~ 559 (627)
.++.+-++..+..|-..+..-. +-.|.+..|++-..+++..++-.++.+|+.+......+...+-.+....+..-+..
T Consensus 60 dRIl~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 3444445555555543322211 22456666777777788889999999999998854434333334566677777777
Q ss_pred CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHH
Q 006877 560 GSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESG-TDRAKRKAGSIL 614 (627)
Q Consensus 560 ~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL 614 (627)
..|.+|..|+.+|..+-.... +.+ .++..+..++++. ++++++.|...+
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~dee~------~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDEEC------PVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 889999999999988874322 222 3566777888776 788888876654
No 344
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.06 E-value=18 Score=38.96 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=85.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccC-CCchHHHHHcCChHHHH-HhhccCChhhHHHHHHHHHHHhcChhhHHHHhh-
Q 006877 470 ALIRLLCDGTPRGKKDAATAIFNLSIY-QGNKARAVRAGIVPPLM-RFLKDAGGGMVDEALAILAILASHQEGKTAIGQ- 546 (627)
Q Consensus 470 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~~~~~l~~~g~v~~Lv-~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~- 546 (627)
.+..-..+++...+..|+..|.|.+.. ++.+...... .+..++ .+.++.+.+++-.++..|..+.....+....--
T Consensus 262 ~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~ 340 (533)
T KOG2032|consen 262 SLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL 340 (533)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence 333334456678888999999999987 3333333322 333333 444445677888888888877765444432211
Q ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHHh---cCCHH--HHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 547 AEPIPVLMEVIRTGSPRNRENAAAVLWAIC---TGDAE--QLKIARELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 547 ~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~---~~~~~--~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
-.+.-.+-.+..+.++..+-+|......|. .++.+ ....+. +...+|+..+++.+|.+-+.....++.+
T Consensus 341 l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~--k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 341 LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVK--KRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHH--hccccceeeeCCCChHHHHHHHHHHHhc
Confidence 123445555666778888888876666554 43322 122222 2334666777888887777766666654
No 345
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.03 E-value=19 Score=33.29 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=69.7
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCC-HHHHHHHHHHHHHhccCCCchHH
Q 006877 426 AIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGT-PRGKKDAATAIFNLSIYQGNKAR 502 (627)
Q Consensus 426 ~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~~~~~~~ 502 (627)
.+..+..+|++.+++.+-.++..+.-++.... .+.+.+. ..+..|+.+|+..+ ..+++.++.+|..|...-.+...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45667888888888888877777776655432 3444343 57788999998754 56677788887777654333333
Q ss_pred HHHc-------CChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 006877 503 AVRA-------GIVPPLMRFLKDAGGGMVDEALAILAILAS 536 (627)
Q Consensus 503 l~~~-------g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~ 536 (627)
+.+. ++++.+++++.+ ....+.++.+|..+..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3322 345556665543 4556777777777765
No 346
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.98 E-value=2.3 Score=41.85 Aligned_cols=29 Identities=21% Similarity=0.521 Sum_probs=22.9
Q ss_pred ccccHHHHHHHHHh------------CCCCCCCccccccCC
Q 006877 269 QTYERSCIQKWLDA------------GHKTCPKTQQTLLHT 297 (627)
Q Consensus 269 ~t~~r~ci~~~~~~------------~~~~CP~~~~~l~~~ 297 (627)
..+|++|+-+||.. |..+||+||+.+.-.
T Consensus 327 p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 327 PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 35789999999963 567999999887643
No 347
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.86 E-value=1.1e+02 Score=30.01 Aligned_cols=129 Identities=16% Similarity=0.058 Sum_probs=79.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHH
Q 006877 352 ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV 431 (627)
Q Consensus 352 ~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv 431 (627)
+..+++.+...++.|..++.+...+... ++..|..+...++...+.-+...+..+-..++ +.. +.+..++
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f----~~L~~~L 80 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF----PFLQPLL 80 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH----HHHHHHH
Confidence 3456888999999999999765222222 24566666666666665566666665543221 111 3344444
Q ss_pred HHH--c------cC--CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHh-ccCCHHHHHHHHHHHHHhc
Q 006877 432 DVL--K------NG--SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLS 494 (627)
Q Consensus 432 ~lL--~------~~--~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~ 494 (627)
..+ + ++ ..+.....+..+..++...++ .-...++.+...| +..++..+..++.+|..||
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 331 1 11 244555556677777665544 2225677888888 6777888889999999999
No 348
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.55 E-value=17 Score=29.93 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=55.7
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHh-hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 509 VPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG-QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 509 v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~-~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
....+..|.++.+.++..++..|..|..... ..+. ..+.+..+...|++.++-+--+|+..|..|+...|+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 3455667778888899999999999998766 1222 235677777888888889999999999999998875
No 349
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=70.43 E-value=3.7 Score=29.95 Aligned_cols=29 Identities=28% Similarity=0.737 Sum_probs=23.4
Q ss_pred CccCCCCcccc--cCceec--cCcccccHHHHH
Q 006877 249 DFRCPISLELM--KDPVIV--STGQTYERSCIQ 277 (627)
Q Consensus 249 ~f~Cpic~~~m--~dPv~~--~cg~t~~r~ci~ 277 (627)
.-.|++|++.+ .|.+++ .||-.|.|.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 45799999999 677664 799999999943
No 350
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=69.72 E-value=1.6e+02 Score=31.32 Aligned_cols=103 Identities=9% Similarity=0.072 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-----CHHHHHHHHHHHHhhcc-CCcchHHHh-hcCCh
Q 006877 355 NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-----DPRTQEHAVTALLNLSI-NDSNKGTIV-NAGAI 427 (627)
Q Consensus 355 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~~L~nLs~-~~~~k~~i~-~~g~i 427 (627)
+.++..+|+++|.++..++...+....++.....+.+.+... --+++.-=+..|.-|.. ....|.+++ +.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 357788899999999999999999999888777777766431 11222222343333322 334555555 78899
Q ss_pred HHHHHHHccC---------CH------HHHHHHHHHHHHhcCCch
Q 006877 428 PDIVDVLKNG---------SM------EARENAAATLFSLSVIDE 457 (627)
Q Consensus 428 ~~Lv~lL~~~---------~~------e~~~~aa~~L~~Ls~~~~ 457 (627)
+.+...|... .+ +....++.++||+..+.+
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 9999998642 11 234567788888876543
No 351
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=69.32 E-value=1.2e+02 Score=34.19 Aligned_cols=206 Identities=19% Similarity=0.131 Sum_probs=105.1
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcch----HHHhhc---CChHHHHHHHccCCHHHHHHHHHHHHHhc-CCc
Q 006877 385 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK----GTIVNA---GAIPDIVDVLKNGSMEARENAAATLFSLS-VID 456 (627)
Q Consensus 385 ~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k----~~i~~~---g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls-~~~ 456 (627)
.+-.|+++|+.-+.+-......-+.. .. ...+ +.+... .++..+.+.+.++..... .++.++..+. ...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPL-EAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhh
Confidence 45567777776554444433333322 11 1122 223333 356667777777642211 1222222211 110
Q ss_pred hhhHHhhhhCcHHHHHHHhccC----CHHHHHHHHHHHHHhc----cCCCchHHHHHcCChHHHHHhhcc----CChhhH
Q 006877 457 ENKVAIGAAGAIPALIRLLCDG----TPRGKKDAATAIFNLS----IYQGNKARAVRAGIVPPLMRFLKD----AGGGMV 524 (627)
Q Consensus 457 ~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~----~~~~~~~~l~~~g~v~~Lv~lL~~----~~~~~~ 524 (627)
.. ....+..+..++.++ .+.+...|+.++++|. ...+.+...+-...++.|...|.. .+..-+
T Consensus 389 ~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 389 YP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred cC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 00 113567777777753 3445555555665554 333322222333466666666643 333334
Q ss_pred HHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHh-c--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhc
Q 006877 525 DEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-T--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES 601 (627)
Q Consensus 525 ~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~-~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~ 601 (627)
..++.+|+|+... ..++.+..++. . .+..+|..|+.+|..++...|.. +.+.|+.++.+
T Consensus 464 ~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n 525 (574)
T smart00638 464 QLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLN 525 (574)
T ss_pred eeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcC
Confidence 4566677666542 24556666665 2 24679999999999887655542 33456666655
Q ss_pred C--ChHHHHHHHHHHHH
Q 006877 602 G--TDRAKRKAGSILEL 616 (627)
Q Consensus 602 ~--~~~~k~~A~~lL~~ 616 (627)
. ++++|-.|..+|-.
T Consensus 526 ~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 526 RAEPPEVRMAAVLVLME 542 (574)
T ss_pred CCCChHHHHHHHHHHHh
Confidence 4 56666666555443
No 352
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.21 E-value=56 Score=36.12 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=70.7
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 006877 506 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKI 585 (627)
Q Consensus 506 ~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 585 (627)
.|.+..++.-+.+++..++..++.+|+.++..-......+..|.+..|.+-+....+.+|..|+.+|..+-......-.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 4567777777888888899999999999988655555555567777887777777788999999998876543221111
Q ss_pred HHHcCcHHHHHHhhhcC-ChHHHHHHHH
Q 006877 586 ARELDAEEALKELSESG-TDRAKRKAGS 612 (627)
Q Consensus 586 ~~~~g~i~~L~~l~~~~-~~~~k~~A~~ 612 (627)
.+...|..++++. +.++++.|..
T Consensus 169 ----~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 ----RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred ----HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 2334566666665 5666666543
No 353
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=68.99 E-value=1.2e+02 Score=29.73 Aligned_cols=128 Identities=12% Similarity=0.120 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCCh------------------hhHHHHHHHHHHHhcChhhH
Q 006877 480 PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG------------------GMVDEALAILAILASHQEGK 541 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~------------------~~~~~Al~~L~~L~~~~~~~ 541 (627)
..-...++..+..|...+++...+...+.++-+.+.|...++ .+...=...|+.++.++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 555667788888888888888888888888888887754211 11223356778899999999
Q ss_pred HHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHH-HHHhhhcCChHHHHHHHHHHHHHH
Q 006877 542 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEA-LKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 542 ~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~-L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
..+-+.+.+..+..+....+. .....-+|.+|=-+.+ |-... |-..+.+++..++..|...|+.+-
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~---------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVD---------GHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCc---------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 999889999999999987543 2222234444422222 22332 446788999999999999998764
No 354
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=68.83 E-value=1.9 Score=48.23 Aligned_cols=49 Identities=24% Similarity=0.631 Sum_probs=40.1
Q ss_pred CCccCCCCcccccCceeccCcccccHHHHHHHHHh--CCCCCCCccccccC
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~~ 296 (627)
.+..||||.....+|+.+.|.|.||+.|+..-|.. +...||+|+.....
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 45679999999999999999999999998876653 35679999855543
No 355
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=67.97 E-value=34 Score=38.59 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=86.1
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCchHHH
Q 006877 425 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARA 503 (627)
Q Consensus 425 g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~l 503 (627)
.+++.|...+++.+..+++.++..+-..+..-+ ...+..-.+|.+-++.. +.+..++.+++.++..+. ..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------q~l 460 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------QRL 460 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH------HHH
Confidence 456666666667778888888888877754433 23334445666665533 346778888888888887 233
Q ss_pred HHcCChHHHHHhh---ccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC
Q 006877 504 VRAGIVPPLMRFL---KDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS 561 (627)
Q Consensus 504 ~~~g~v~~Lv~lL---~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~ 561 (627)
-...+++.+..++ ...++.++...+.+..++.....++..+....++|.++.+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 3344445444444 457889999999999998885444355555678898888887665
No 356
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=67.89 E-value=1.6e+02 Score=30.64 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=108.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcc-CC-cchHHHhh-cC-ChHHHHHHHccC-----C--------HHHHHHHHHH
Q 006877 386 IPLLVELLSSTDPRTQEHAVTALLNLSI-ND-SNKGTIVN-AG-AIPDIVDVLKNG-----S--------MEARENAAAT 448 (627)
Q Consensus 386 i~~Lv~lL~~~~~~~~~~A~~~L~nLs~-~~-~~k~~i~~-~g-~i~~Lv~lL~~~-----~--------~e~~~~aa~~ 448 (627)
++.+.+.|.+....+...++..|..+.. +. .....+.. -+ -.+.+.+++... . +.+|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888999888888899999999977 43 23334442 22 345566666321 1 1677777776
Q ss_pred HHHhcCC--chhhHHhhhh-CcHHHHHHHhccCCHHHHHHHHHHHHH-hccCCC----chHHHHHcCChHHHHHhhccCC
Q 006877 449 LFSLSVI--DENKVAIGAA-GAIPALIRLLCDGTPRGKKDAATAIFN-LSIYQG----NKARAVRAGIVPPLMRFLKDAG 520 (627)
Q Consensus 449 L~~Ls~~--~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~~----~~~~l~~~g~v~~Lv~lL~~~~ 520 (627)
+..+-.. ...+..+... +.+..+.+-|..++.++....+.+|.. +...+. .+..+....++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 6655433 3455555554 778899999988889999999999985 444432 3345666778889999777666
Q ss_pred h----hhHHHHHHHHHHHhcChhh
Q 006877 521 G----GMVDEALAILAILASHQEG 540 (627)
Q Consensus 521 ~----~~~~~Al~~L~~L~~~~~~ 540 (627)
+ .+.+.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 7889999999999987654
No 357
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=67.62 E-value=3.2 Score=39.07 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=36.8
Q ss_pred CccCCCCcccccCcee-ccCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 249 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
-..|.+|..+...-+. -+||-.|.+.|++.++.+ ...||.|+.-.++.
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h~ 229 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTHP 229 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCcc
Confidence 3579999998865543 367778899999999985 67799997655443
No 358
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=67.52 E-value=16 Score=31.84 Aligned_cols=71 Identities=8% Similarity=0.255 Sum_probs=51.7
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHH-cCcHHHHHHhhh-----cC---ChHHHHHHHHHHHHHH
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL-KIARE-LDAEEALKELSE-----SG---TDRAKRKAGSILELLQ 618 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~-~g~i~~L~~l~~-----~~---~~~~k~~A~~lL~~l~ 618 (627)
+...|.+-|+..++.+|..|+.+|..||..++... ..+.+ ...|..+.+.-. .| ...++.+|.+++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 45677777788889999999999999999877544 44433 245666666544 33 4678999999999886
Q ss_pred h
Q 006877 619 R 619 (627)
Q Consensus 619 ~ 619 (627)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 359
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=67.31 E-value=1.6e+02 Score=33.41 Aligned_cols=125 Identities=20% Similarity=0.153 Sum_probs=71.0
Q ss_pred HHHHHHhcC----CCHHHHHHHHHHHHhhccC---C-------cchHHHhhcCChHHHHHHHc----cCCHHHHHHHHHH
Q 006877 387 PLLVELLSS----TDPRTQEHAVTALLNLSIN---D-------SNKGTIVNAGAIPDIVDVLK----NGSMEARENAAAT 448 (627)
Q Consensus 387 ~~Lv~lL~~----~~~~~~~~A~~~L~nLs~~---~-------~~k~~i~~~g~i~~Lv~lL~----~~~~e~~~~aa~~ 448 (627)
..+..++.+ .++.++..|+-++..|... . ...........++.+...|. .++.+.+..++.+
T Consensus 434 ~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 513 (618)
T PF01347_consen 434 KELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKA 513 (618)
T ss_dssp HHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Confidence 445555554 3556777777777776431 1 11122223445666666665 3466778888899
Q ss_pred HHHhcCCchhhHHhhhhCcHHHHHHHhccC---CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccC--Chhh
Q 006877 449 LFSLSVIDENKVAIGAAGAIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDA--GGGM 523 (627)
Q Consensus 449 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~--~~~~ 523 (627)
|.|+-.. ..++.|..++... +...+..|++||..+....... +.+.|++++.+. +.++
T Consensus 514 LgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~Ev 576 (618)
T PF01347_consen 514 LGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEV 576 (618)
T ss_dssp HHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHH
T ss_pred hhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhH
Confidence 9888532 3678888888765 5677888999998875543222 345677777663 3444
Q ss_pred HHHHH
Q 006877 524 VDEAL 528 (627)
Q Consensus 524 ~~~Al 528 (627)
+..|+
T Consensus 577 RiaA~ 581 (618)
T PF01347_consen 577 RIAAY 581 (618)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 360
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=67.15 E-value=2.4e+02 Score=32.44 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=80.9
Q ss_pred hHHHHHHHHhcC-----CC---HHHHHHHHHHHHHHhh--hChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 006877 342 AAIDALLGKLAN-----GN---VEEQRAAAGELRLLAK--RNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNL 411 (627)
Q Consensus 342 ~~i~~Lv~~L~s-----~~---~~~~~~a~~~L~~L~~--~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nL 411 (627)
|.++.++.-|.. .+ ......|++.+..+.. +.+....-+.+.=.++.++..++++.--++..||..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 667777777731 12 2223344444444432 1122223334444567777788888888899999999888
Q ss_pred ccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCCHH
Q 006877 412 SINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPR 481 (627)
Q Consensus 412 s~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~ 481 (627)
+.+=. ..-.-..+.+.....|++.+-.++..|+-+|.-+-.++....++.+. +.+..|+.+-+.-+.+
T Consensus 488 eeDfk--d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD 557 (970)
T COG5656 488 EEDFK--DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEID 557 (970)
T ss_pred HHhcc--cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccch
Confidence 55421 22222335667777888877778888888887776666555555554 5555555554443333
No 361
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.08 E-value=1.4e+02 Score=29.85 Aligned_cols=218 Identities=14% Similarity=0.083 Sum_probs=122.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHHHhhcCChHHHHHHHcc--CCHHHHHHHHHHHHHhcCCchhhHHhhh
Q 006877 388 LLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLKN--GSMEARENAAATLFSLSVIDENKVAIGA 464 (627)
Q Consensus 388 ~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~--~~~e~~~~aa~~L~~Ls~~~~~~~~i~~ 464 (627)
.|=..|.++|+.+|..|+..|..+... +... ....-+..|+..+.+ .+......++..+..|.......... .
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-A 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-H
Confidence 344678889999999999999877543 2111 122225566665543 24455555566666555332211111 0
Q ss_pred hCcHHHHHHHhcc--CCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhH
Q 006877 465 AGAIPALIRLLCD--GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGK 541 (627)
Q Consensus 465 ~g~i~~Lv~lL~~--~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~~ 541 (627)
...+..+..-..- -....+..+...|..|..+......-...+.+..+++.+.. .||.-...+..++..+...-+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI- 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence 1122222221111 13456777777887776543211111224568888888866 6888888888888877764331
Q ss_pred HHHhhCCChHHHHHHHh-------c---CCH--HHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHH
Q 006877 542 TAIGQAEPIPVLMEVIR-------T---GSP--RNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRK 609 (627)
Q Consensus 542 ~~i~~~g~v~~Lv~lL~-------~---~~~--~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~ 609 (627)
.....-+.+.+. . ++| -.++.-...|.+.-...+... .-++|.|++=+.++.+.+|.-
T Consensus 158 -----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 -----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred -----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHH
Confidence 122333333332 1 122 245555555555333343322 246888998888999999999
Q ss_pred HHHHHHHHHhH
Q 006877 610 AGSILELLQRI 620 (627)
Q Consensus 610 A~~lL~~l~~~ 620 (627)
+...|..+...
T Consensus 228 ~L~tL~~c~~~ 238 (262)
T PF14500_consen 228 SLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHH
Confidence 88888877543
No 362
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.63 E-value=2.2 Score=41.35 Aligned_cols=48 Identities=15% Similarity=0.429 Sum_probs=32.0
Q ss_pred CCCCcccc-cCcee-ccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCcc
Q 006877 252 CPISLELM-KDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 252 Cpic~~~m-~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 302 (627)
|--|..-- .+|.. ++|+|.||..|...-. ...||.|++++....+..|
T Consensus 6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred eccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 55454322 56664 5999999999964422 2389999998765555544
No 363
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=66.43 E-value=2.7 Score=30.79 Aligned_cols=38 Identities=18% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCccCCCCcccccCceeccCcccccHHHHHHHHHh-CCCCCCCccc
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-GHKTCPKTQQ 292 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~-~~~~CP~~~~ 292 (627)
+.|.||.|.+.+... .+...+....... ....||.|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 479999999943321 2344444444432 3467999975
No 364
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=66.18 E-value=28 Score=31.14 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=58.5
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhc------CChHHHHHHHHHHHHHHh
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 619 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~------~~~~~k~~A~~lL~~l~~ 619 (627)
.++..+..-|.++++.++..|+.+|-.+..|.+. ....+...+.+.-|+.++.. ..+.++.+...++..-.+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3577788888999999999999999999998765 55667777889899999863 357899998888877653
No 365
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=65.99 E-value=33 Score=30.39 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=56.5
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhcCC--hHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSESGT--DRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~~~--~~~k~~A~~lL~~l~~ 619 (627)
++..|-+-|.++++.++..|+.+|-.+..+.+. ....+...+.+..|..++.... +.+++++..++..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 566788888899999999999999999998654 5577778889999999887753 3388888887776653
No 366
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=65.87 E-value=3.8 Score=42.61 Aligned_cols=29 Identities=21% Similarity=0.610 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHh------------CCCCCCCccccccCCC
Q 006877 270 TYERSCIQKWLDA------------GHKTCPKTQQTLLHTA 298 (627)
Q Consensus 270 t~~r~ci~~~~~~------------~~~~CP~~~~~l~~~~ 298 (627)
..|..|+-+||.. |.-+||+||.++.-.+
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3466899999974 4568999999876443
No 367
>PHA02862 5L protein; Provisional
Probab=65.44 E-value=4.7 Score=35.65 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=31.4
Q ss_pred cCCCCcccccCceeccCcc-----cccHHHHHHHHHh-CCCCCCCccccccC
Q 006877 251 RCPISLELMKDPVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKTQQTLLH 296 (627)
Q Consensus 251 ~Cpic~~~m~dPv~~~cg~-----t~~r~ci~~~~~~-~~~~CP~~~~~l~~ 296 (627)
.|-||.+--.+. .-||.. -..+.|+++|+.. +...||.|+.+...
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 577887765443 345543 2568999999984 45789999987653
No 368
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=65.22 E-value=5.7 Score=28.21 Aligned_cols=39 Identities=31% Similarity=0.747 Sum_probs=21.6
Q ss_pred CCCCccccc--CceeccCcc-----cccHHHHHHHHHh-CCCCCCCc
Q 006877 252 CPISLELMK--DPVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKT 290 (627)
Q Consensus 252 Cpic~~~m~--dPv~~~cg~-----t~~r~ci~~~~~~-~~~~CP~~ 290 (627)
|-||.+--. +|.+.||+- -..+.|+++|+.. ++..|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 445554332 256667652 2467899999984 56678876
No 369
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.01 E-value=23 Score=38.80 Aligned_cols=21 Identities=5% Similarity=-0.061 Sum_probs=13.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q 006877 63 EIKGFELLRDALDSSVELLKS 83 (627)
Q Consensus 63 ~~~~l~~L~~~l~~ak~Ll~~ 83 (627)
+-++++..+-.|..-.+-+++
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~y 81 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEY 81 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 556666677666666666665
No 370
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=64.62 E-value=20 Score=32.13 Aligned_cols=72 Identities=25% Similarity=0.217 Sum_probs=58.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCHHHHHHHhcCC-CHH---HHHHHHHHHHhhc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSST-DPR---TQEHAVTALLNLS 412 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~-~~~---~~~~A~~~L~nLs 412 (627)
...+..|...|.++++.+|..|+..|-.+.+++ +.....+....++..|.+++.+. ... +++.++..|...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999876 45566777778999999988754 333 7888888877664
No 371
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.46 E-value=69 Score=39.43 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=75.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHh
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAI 462 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i 462 (627)
+++..++..|..+...+|..|+.+|.++..-+.. .+.....-..+..-+...+..+|+.|+..++..... ++...+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 5677888899999999999999999999664321 111222233344445566778999999988754322 222222
Q ss_pred hhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHH
Q 006877 463 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 502 (627)
Q Consensus 463 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 502 (627)
+...+++-+.+....+++.+++.+..+|...++-..
T Consensus 893 ----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~ 928 (1692)
T KOG1020|consen 893 ----YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK 928 (1692)
T ss_pred ----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh
Confidence 344555555666788999999999999986655443
No 372
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=64.07 E-value=4.3 Score=30.63 Aligned_cols=13 Identities=31% Similarity=0.979 Sum_probs=9.6
Q ss_pred cccHHHHHHHHHh
Q 006877 270 TYERSCIQKWLDA 282 (627)
Q Consensus 270 t~~r~ci~~~~~~ 282 (627)
.|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 373
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=28 Score=38.09 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=64.4
Q ss_pred hCcHHHHHHH-hccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHH
Q 006877 465 AGAIPALIRL-LCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKT 542 (627)
Q Consensus 465 ~g~i~~Lv~l-L~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~~~ 542 (627)
.|++..|++. +.+++.++++.|+-||.-+|..+. ..++..+++|.. .+..++.....+|+.-|.....+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~- 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK- 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence 3677778777 566788999999999988877543 345566777754 55666666666666666543322
Q ss_pred HHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 543 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 543 ~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
-++..|-.++...++-+|..|+-++..+.
T Consensus 621 -----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 621 -----VATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred -----HHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 13455556666777778887776665543
No 374
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.29 E-value=5.2 Score=45.81 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCCCCccCCCCcccc-cCcee-ccCcccccHHHHHHHHH
Q 006877 245 VIPDDFRCPISLELM-KDPVI-VSTGQTYERSCIQKWLD 281 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m-~dPv~-~~cg~t~~r~ci~~~~~ 281 (627)
.+...-.|-+|...+ ..|.. .+|||.|.+.|+.+...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 344556899998744 56765 59999999999998775
No 375
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.28 E-value=32 Score=37.92 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=73.0
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHh
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG 545 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~ 545 (627)
|.+..+++-+.+.+..++..++..|.-+..+-......+..|.+..|.+-+.+..+.++..|+.+|..+-....+-.-
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-- 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-- 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--
Confidence 455666666677889999999999999987766666777788999999999888889999999999877653222111
Q ss_pred hCCChHHHHHHHhc-CCHHHHHHHH
Q 006877 546 QAEPIPVLMEVIRT-GSPRNRENAA 569 (627)
Q Consensus 546 ~~g~v~~Lv~lL~~-~~~~~~~~A~ 569 (627)
..+..|+.++++ ++.++|..|.
T Consensus 169 --~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 169 --RIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred --HHHHHHHHHHhcCcHHHHHHHHH
Confidence 123466677775 5567776654
No 376
>PHA03096 p28-like protein; Provisional
Probab=63.06 E-value=4.8 Score=40.65 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=29.8
Q ss_pred ccCCCCccccc-Cc-------eeccCcccccHHHHHHHHHhC--CCCCCCccc
Q 006877 250 FRCPISLELMK-DP-------VIVSTGQTYERSCIQKWLDAG--HKTCPKTQQ 292 (627)
Q Consensus 250 f~Cpic~~~m~-dP-------v~~~cg~t~~r~ci~~~~~~~--~~~CP~~~~ 292 (627)
-.|.||++.-. .| ....|.|+||-.||..|.... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 45889987432 21 123799999999999999853 346666654
No 377
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=61.80 E-value=2.2e+02 Score=30.08 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=60.4
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccC-CHHHHHHHH-HHHHHhcCCchhhHHh
Q 006877 386 IPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNG-SMEARENAA-ATLFSLSVIDENKVAI 462 (627)
Q Consensus 386 i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~aa-~~L~~Ls~~~~~~~~i 462 (627)
|..++.=|.+ ....+|..++--|+.-..++.-+..+...|.++.+++.+... +......++ .+++-++.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 3445554553 356788888877888778888999999999999999999543 333444444 4444555544444444
Q ss_pred hhhCcHHHHHHHhc
Q 006877 463 GAAGAIPALIRLLC 476 (627)
Q Consensus 463 ~~~g~i~~Lv~lL~ 476 (627)
...+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 44566666677777
No 378
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=61.42 E-value=31 Score=30.83 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=56.6
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhcC-ChH---HHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSESG-TDR---AKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~~-~~~---~k~~A~~lL~~l~~ 619 (627)
++..|-.-|.++++.++..|+.+|-.+..+.+. ....+.....+..|..++.+. +.. +++++..+|.....
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 566788888889999999999999999999864 446666667899999988765 433 78888888877654
No 379
>PF14353 CpXC: CpXC protein
Probab=59.74 E-value=6.9 Score=34.48 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=29.8
Q ss_pred ccCCCCcccccCceeccCcccccHHHHHHHHHhCC---CCCCCcccccc
Q 006877 250 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGH---KTCPKTQQTLL 295 (627)
Q Consensus 250 f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~---~~CP~~~~~l~ 295 (627)
.+||-|+..+.-.+-+.-.-+....-.++.+. |. .+||.|+....
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~-g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILD-GSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc-CCcCEEECCCCCCcee
Confidence 57999999887655433333334555666664 43 58999998764
No 380
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.53 E-value=57 Score=36.78 Aligned_cols=108 Identities=16% Similarity=0.052 Sum_probs=79.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHH------cCChHHHHHhhccCChhhHHHHHHHHHHHhcCh---
Q 006877 468 IPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR------AGIVPPLMRFLKDAGGGMVDEALAILAILASHQ--- 538 (627)
Q Consensus 468 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~------~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~--- 538 (627)
...++.+|++.+...+...+.+.+|+..+......+++ +..+..|++-|.+.++-++..|+.++..++.-+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 46678889888888888888888998865433334444 235666677777889999999999999998743
Q ss_pred -hhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 539 -EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 539 -~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
..|..+ +...++-++..+.-+|.+|+.++..|-...|
T Consensus 381 ~~~r~ev-----~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGRRHEV-----IRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cchHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 234333 4455667788888899999999988776555
No 381
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=56.72 E-value=20 Score=33.35 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCC-CccHHHHhhhHHHHh
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL-TPNYVLKSLIALWCE 314 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l-~~n~~l~~~i~~~~~ 314 (627)
+..|.||.|.-.+ +|...+ . -+++||.|+..+...+- .....+...+...-.
T Consensus 111 ~~~y~C~~~~~r~----------sfdeA~-----~-~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~ 163 (176)
T COG1675 111 NNYYVCPNCHVKY----------SFDEAM-----E-LGFTCPKCGEDLEEYDSSEEIEELESELDELEE 163 (176)
T ss_pred CCceeCCCCCCcc----------cHHHHH-----H-hCCCCCCCCchhhhccchHHHHHHHHHHHHHHH
Confidence 4689999887655 244332 3 34899999998864432 233455555555433
No 382
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.58 E-value=12 Score=28.83 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=29.8
Q ss_pred CceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHH
Q 006877 261 DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYV 304 (627)
Q Consensus 261 dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~ 304 (627)
|..+-.-.+|||..|.+..+. ..||.|+..+.....+|-..
T Consensus 21 dA~ICtfEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~ 61 (84)
T COG3813 21 DARICTFECTFCADCAENRLH---GLCPNCGGELVARPIRPAAK 61 (84)
T ss_pred ceeEEEEeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHH
Confidence 333434457999999987765 47999999888777777433
No 383
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=56.43 E-value=39 Score=31.21 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcC--ChHHHHHhhccC-ChhhHHHHHHHHHHHhcChhhH-
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAG--IVPPLMRFLKDA-GGGMVDEALAILAILASHQEGK- 541 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g--~v~~Lv~lL~~~-~~~~~~~Al~~L~~L~~~~~~~- 541 (627)
..+..+..+|.+++...+..++..+.-++...+ ...+.+.| -+..|+.+|... ...+.+.|+.+|..|...-.+.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567788888888888888888877775432 34454544 478899999874 4456778888888777643332
Q ss_pred ---HHHhhC---CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 542 ---TAIGQA---EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 542 ---~~i~~~---g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
.++... +.++.++.+++. ....+.+..+|..+-...|
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 233221 234444554443 4556677777776665544
No 384
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=56.16 E-value=3.1e+02 Score=30.06 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=79.6
Q ss_pred cHHHHHHHhccC----CHHHHHHHHHHHHHhccCCCchH----------HHHHcCC-----hHHHHHhhcc--CChhhHH
Q 006877 467 AIPALIRLLCDG----TPRGKKDAATAIFNLSIYQGNKA----------RAVRAGI-----VPPLMRFLKD--AGGGMVD 525 (627)
Q Consensus 467 ~i~~Lv~lL~~~----~~~~~~~a~~aL~nL~~~~~~~~----------~l~~~g~-----v~~Lv~lL~~--~~~~~~~ 525 (627)
.+..++++++-+ ++......+.-++.+|....+.. .++.-|. ++.++..|-+ .......
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~ 233 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCK 233 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccch
Confidence 344444444432 34555555555666654433222 1233343 3455666644 3335667
Q ss_pred HHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC------CHHHHHHHHHHHHHHhcCCHHHH-HHHHHc--CcHHHHH
Q 006877 526 EALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG------SPRNRENAAAVLWAICTGDAEQL-KIAREL--DAEEALK 596 (627)
Q Consensus 526 ~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~------~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~--g~i~~L~ 596 (627)
.+..++.||+.+.-+.. ++..|..+|.++ +..+-.-|+.++..+..+.++.. ..+--. -+++.|.
T Consensus 234 ~~w~~m~nL~~S~~g~~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~ 307 (464)
T PF11864_consen 234 PSWRTMRNLLKSHLGHS------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLL 307 (464)
T ss_pred hHHHHHHHHHcCccHHH------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHH
Confidence 78889999998665442 456777777322 24455678888877666553222 222112 2677888
Q ss_pred HhhhcCChHHHHHHHHHHHHH
Q 006877 597 ELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 597 ~l~~~~~~~~k~~A~~lL~~l 617 (627)
..++.+++++--....++..+
T Consensus 308 ~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 308 NALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred HHHhCCCCeehHHHHHHHHHH
Confidence 888877766655444444433
No 385
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=56.05 E-value=1e+02 Score=31.26 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=49.7
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH--HHHHcCChHH----HHHhhc--------cCChhhHHHHHHHH
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA--RAVRAGIVPP----LMRFLK--------DAGGGMVDEALAIL 531 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~--~l~~~g~v~~----Lv~lL~--------~~~~~~~~~Al~~L 531 (627)
-.+|+++.++++.++..+..++.+|..+...-.... .+.+.|..+. |..+|. +.+..+...|..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 478999999999999999999999999987543322 2455665443 334443 24455667777777
Q ss_pred HHHhc
Q 006877 532 AILAS 536 (627)
Q Consensus 532 ~~L~~ 536 (627)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 77754
No 386
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.66 E-value=57 Score=37.77 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HhhhChhhHHHHHhcCCHHHHHHHhcC--------CCHHHHHHHHHHHHhhccCCcchHHHhhc----
Q 006877 358 EQRAAAGELRL-LAKRNADNRVCIAEAGAIPLLVELLSS--------TDPRTQEHAVTALLNLSINDSNKGTIVNA---- 424 (627)
Q Consensus 358 ~~~~a~~~L~~-L~~~~~~~r~~i~~~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~nLs~~~~~k~~i~~~---- 424 (627)
.|.++...+.- +++..-...+.+...|++..++.+..- +-.++...|+.+|..+..-+..+..++..
T Consensus 574 ~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n 653 (1516)
T KOG1832|consen 574 LQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSN 653 (1516)
T ss_pred HHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhc
Q ss_pred ----CChHHHHHHHccC----CHHHHHHHHHHHHHhcCCc-hhhH-----------------------------------
Q 006877 425 ----GAIPDIVDVLKNG----SMEARENAAATLFSLSVID-ENKV----------------------------------- 460 (627)
Q Consensus 425 ----g~i~~Lv~lL~~~----~~e~~~~aa~~L~~Ls~~~-~~~~----------------------------------- 460 (627)
.+|..|+..-... +++++..|+.++.|+...+ .++.
T Consensus 654 ~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~ 733 (1516)
T KOG1832|consen 654 NRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWE 733 (1516)
T ss_pred ccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHH
Q ss_pred HhhhhCcHHHHHHHhccCC-----HHHHHHHHHHHHHhccCCCchHHHHHcCCh
Q 006877 461 AIGAAGAIPALIRLLCDGT-----PRGKKDAATAIFNLSIYQGNKARAVRAGIV 509 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v 509 (627)
.+....+|..|+++|+... ..++..|+.+|..|+.++..+..+.+.-+|
T Consensus 734 ~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 734 AVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLV 787 (1516)
T ss_pred HHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccc
No 387
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=55.41 E-value=0.76 Score=35.39 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=21.4
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
+..||.|...|.. ..|+.+|..|-..+. ....||.|++++.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~--~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYK--KEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEE--EEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECccccccce--ecccCCCcccHHH
Confidence 3579999988642 236777887755432 2357999998774
No 388
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.53 E-value=11 Score=37.13 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=33.6
Q ss_pred CCCccCCCCcccccCceeccC----cccccHHHHHHHHHh----CCCCCCC
Q 006877 247 PDDFRCPISLELMKDPVIVST----GQTYERSCIQKWLDA----GHKTCPK 289 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~c----g~t~~r~ci~~~~~~----~~~~CP~ 289 (627)
..-++|.+|.+.+.|-..+.| .|.||-.|-.+.++. |...||.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 345899999999999887765 599999998888874 3345663
No 389
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.41 E-value=7.3 Score=41.41 Aligned_cols=47 Identities=17% Similarity=0.457 Sum_probs=31.4
Q ss_pred CccCCCCc-ccccC---ceeccCcccccHHHHHHHHHh-----CCCCCCC--cccccc
Q 006877 249 DFRCPISL-ELMKD---PVIVSTGQTYERSCIQKWLDA-----GHKTCPK--TQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~-~~m~d---Pv~~~cg~t~~r~ci~~~~~~-----~~~~CP~--~~~~l~ 295 (627)
...|+||. +.+.. -.+..|||.||..|..+++.. ....||. |...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 56899998 43321 113579999999999999973 2346764 444444
No 390
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=53.63 E-value=37 Score=31.81 Aligned_cols=53 Identities=21% Similarity=0.160 Sum_probs=31.6
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCC-CccHHHHhhhHHHHhh
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL-TPNYVLKSLIALWCEN 315 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l-~~n~~l~~~i~~~~~~ 315 (627)
+..|.||.|+.-+ ||.. -+. .++.||.|+..+...+- .....++..|...-..
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~e-----A~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFDE-----AME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcEE----------eHHH-----Hhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 4688999987543 2222 122 57999999998864321 1224566666655443
No 391
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.22 E-value=23 Score=33.67 Aligned_cols=44 Identities=14% Similarity=0.334 Sum_probs=35.6
Q ss_pred cCCCCcccc--cCceeccCcccccHHHHHHHHHh-------CCCCCCCccccc
Q 006877 251 RCPISLELM--KDPVIVSTGQTYERSCIQKWLDA-------GHKTCPKTQQTL 294 (627)
Q Consensus 251 ~Cpic~~~m--~dPv~~~cg~t~~r~ci~~~~~~-------~~~~CP~~~~~l 294 (627)
.|.+|...+ .|.+-+.|-|.|...|+.+|-.. .+..||.|.+.+
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 488888877 47777899999999999999874 234699998774
No 392
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=51.97 E-value=15 Score=31.08 Aligned_cols=43 Identities=26% Similarity=0.303 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHH
Q 006877 359 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQE 402 (627)
Q Consensus 359 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~ 402 (627)
....++.+..|+. .++--..+++.|+++.|+.+|.+.|.++..
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4567778888885 667777888999999999999999887643
No 393
>PLN02189 cellulose synthase
Probab=51.50 E-value=10 Score=44.72 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=35.8
Q ss_pred CccCCCCcccc-----cCceec--cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34899999854 355543 477779999997767789999999987664
No 394
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=50.95 E-value=18 Score=30.69 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=34.8
Q ss_pred HHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhH
Q 006877 484 KDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMV 524 (627)
Q Consensus 484 ~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~ 524 (627)
...+..+..|+..++--..+++.|+++.|+++|.+++.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 45677888999999887789999999999999988777654
No 395
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=50.17 E-value=16 Score=26.77 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=21.4
Q ss_pred cccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 268 GQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 268 g~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
-.|||..|.+..+. ..||.|+..+...
T Consensus 28 ECTFC~~C~e~~l~---~~CPNCgGelv~R 54 (57)
T PF06906_consen 28 ECTFCADCAETMLN---GVCPNCGGELVRR 54 (57)
T ss_pred eCcccHHHHHHHhc---CcCcCCCCccccC
Confidence 46899999998774 5799999877544
No 396
>PLN02436 cellulose synthase A
Probab=49.70 E-value=11 Score=44.41 Aligned_cols=47 Identities=17% Similarity=0.389 Sum_probs=35.8
Q ss_pred CccCCCCcccc-----cCceec--cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34899998754 355543 477779999997767789999999987654
No 397
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.63 E-value=16 Score=41.29 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCCCCccCCCCcccccCce----ecc---CcccccHHHHHHHHHh
Q 006877 245 VIPDDFRCPISLELMKDPV----IVS---TGQTYERSCIQKWLDA 282 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv----~~~---cg~t~~r~ci~~~~~~ 282 (627)
+.++.-.|++|.--+.+|+ +.+ |+|.+|-.||..|.+.
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 4556778999998888865 234 8999999999999984
No 398
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=49.40 E-value=2e+02 Score=32.64 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=41.2
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 504 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 504 ~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
...+++|.|++++...+..++-.-+.-+-+...+ -...+++...+|.+..-+...++.+|+.++..+..|+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 4556677777777666665554433333333322 12234445566777666666777777777666666554
No 399
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.08 E-value=2.5e+02 Score=34.91 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=61.0
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc-CCCchHHH
Q 006877 425 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKARA 503 (627)
Q Consensus 425 g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~l 503 (627)
+++..|+.+|..+...+|..|..+|.++...+.. .+....+-..+-..+.+.+..+++.|+..++.... +++-..+.
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPS--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3556666666666677788888888777665531 11122233334444555567777777777775433 22221111
Q ss_pred HHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh
Q 006877 504 VRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 538 (627)
Q Consensus 504 ~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~ 538 (627)
-..+..-+.++...++..++.++..+|...
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 122333344566667788888888888743
No 400
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.91 E-value=2.2e+02 Score=32.10 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHhhhhhhHHhhhhcCCCCChHHHHhHHHHHHHHHHHHHHHHhcCC
Q 006877 32 KKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKSTND 86 (627)
Q Consensus 32 ~~~~~~l~~~~~ll~~~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~ 86 (627)
++.-.+..+++..+.--++||...+. .|.-...|+.-+..|..+..+.+.+..
T Consensus 181 ~~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~ 233 (563)
T TIGR00634 181 QQKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQN 233 (563)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHH
Confidence 44455678899999999999987652 333445555556666555555555543
No 401
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=48.18 E-value=1.4e+02 Score=30.20 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=34.7
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH--HHhhcCChHHHHHH
Q 006877 385 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG--TIVNAGAIPDIVDV 433 (627)
Q Consensus 385 ~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~--~i~~~g~i~~Lv~l 433 (627)
++|+++.++.+.++.++..++.+|..+...-.... .+...|..+.+-+.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~a 170 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDA 170 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHH
Confidence 57999999999999999999999999876432222 23355544444333
No 402
>PRK14707 hypothetical protein; Provisional
Probab=47.82 E-value=7.9e+02 Score=32.35 Aligned_cols=273 Identities=14% Similarity=0.082 Sum_probs=142.5
Q ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHH-hhccCCcchH
Q 006877 342 AAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALL-NLSINDSNKG 419 (627)
Q Consensus 342 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-nLs~~~~~k~ 419 (627)
..|..++..++. .+......|+..|.....+...-+..+-..|+...|-.+-+-++...-.+|+.+|. .++.+...+.
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~ 284 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRK 284 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence 345555555542 33344556666666655444444444443443333333444466655555555554 3444443333
Q ss_pred HHhhcCChHHHHHHHcc-CCHH-HHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc-CC-HHHHHHHHHHHHHhcc
Q 006877 420 TIVNAGAIPDIVDVLKN-GSME-ARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GT-PRGKKDAATAIFNLSI 495 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~-~~~e-~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~-~~~~~~a~~aL~nL~~ 495 (627)
.+ .+-.+...+.-|+. .+.+ .+..|..+-..|..+...+..+- .-.+...++-|.. ++ ....+.|...-..|+.
T Consensus 285 al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~ 362 (2710)
T PRK14707 285 AL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVA 362 (2710)
T ss_pred hc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence 33 22234444444443 2333 34444444455655444333222 2334455555554 33 4444444444446776
Q ss_pred CCCchHHHHHcCChHHHHHhhc-cCChhhHHHHHHHH-HHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHH
Q 006877 496 YQGNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAIL-AILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVL 572 (627)
Q Consensus 496 ~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~Al~~L-~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L 572 (627)
+++-+..+- ..++...+.-|. -++......|...| ..+..+++-+..+-.. .|...+.-|.. ++..+...|+..|
T Consensus 363 d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 363 DPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred CHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCCcchhHHHHHHHH
Confidence 666555444 334555555554 35555555555544 4666677777666544 45555555543 5666777778777
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHH-HHHHHHHHHHH
Q 006877 573 WAICTGDAEQLKIARELDAEEALKELSESGTDRAK-RKAGSILELLQ 618 (627)
Q Consensus 573 ~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k-~~A~~lL~~l~ 618 (627)
..-...+.+-+..+--.++...|--+.+=++.++. ..|..+...|.
T Consensus 441 A~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 441 AGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred HHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 77666666766666555666666666666655554 44444555554
No 403
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.65 E-value=3.7e+02 Score=28.48 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHh-cc--CCHHHHHHHHHHHHHhccCCCc-------------hHH
Q 006877 441 ARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLL-CD--GTPRGKKDAATAIFNLSIYQGN-------------KAR 502 (627)
Q Consensus 441 ~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL-~~--~~~~~~~~a~~aL~nL~~~~~~-------------~~~ 502 (627)
-+..|...|..|+.. ....+... +.+..++.-. .+ .+.+.+..|+..+..|+..... ...
T Consensus 227 rR~AA~dfl~~L~~~--~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 227 RRRAACDFLRSLCKK--FEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred cHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 356777777777643 22222211 2333333211 12 3456777888888888875432 122
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHH
Q 006877 503 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 572 (627)
Q Consensus 503 l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L 572 (627)
+....++|-|. -=.+..+-++..|++.+......- .+..+. +.+|.++..|.+++.-++..|+.++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33344444443 111245667788888888777642 233333 4799999999999988988887654
No 404
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=47.62 E-value=18 Score=36.14 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=24.9
Q ss_pred CccCCCCcccc-cCc-ee-ccCcccccHHHHHHHHH
Q 006877 249 DFRCPISLELM-KDP-VI-VSTGQTYERSCIQKWLD 281 (627)
Q Consensus 249 ~f~Cpic~~~m-~dP-v~-~~cg~t~~r~ci~~~~~ 281 (627)
.-.|.||+-=| ..| .+ ++|-|-|.-.|+.+|+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~ 150 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLT 150 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHH
Confidence 56799998755 345 33 68999888888888875
No 405
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=46.75 E-value=1.9e+02 Score=27.19 Aligned_cols=126 Identities=12% Similarity=0.098 Sum_probs=77.7
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh
Q 006877 467 AIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ 546 (627)
Q Consensus 467 ~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~ 546 (627)
.++.++++..+.+..++..|+..+.-+....=... .-++|.|+.+..++++.+...|...+..+....++--.---
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56777777778888888888888776554211000 12688999999999999999999999999875433211111
Q ss_pred CCChHHHHHHHhc--CCHH--H---HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhc
Q 006877 547 AEPIPVLMEVIRT--GSPR--N---RENAAAVLWAICTGDAEQLKIARELDAEEALKELSES 601 (627)
Q Consensus 547 ~g~v~~Lv~lL~~--~~~~--~---~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~ 601 (627)
..++..-..+-+. ++.. . ...-..-|+.++.++...+..+ +..|++.+..
T Consensus 85 ~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~ 141 (187)
T PF12830_consen 85 SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDF 141 (187)
T ss_pred HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHh
Confidence 1245444444432 2211 1 4455667777777665555544 4445555443
No 406
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=46.08 E-value=15 Score=37.35 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=36.5
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHHh-CCCCCCCccccc
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-GHKTCPKTQQTL 294 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l 294 (627)
.++-.|-||-+-..--..+||||..|-.|-.+.-.- ....||.|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 456789999887766667899999999997665442 456899998543
No 407
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.80 E-value=1.5e+02 Score=25.22 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=51.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCHHHHHHHhc------CCCHHHHHHHHHHHHh
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLS------STDPRTQEHAVTALLN 410 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~------~~~~~~~~~A~~~L~n 410 (627)
...+..+...|.+.+|.++..|+..|..+.++.. .....+....++..++++.. ..+..++..+...+..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4588899999999999999999999999998654 44556666666666655311 1267788887776644
No 408
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=45.51 E-value=9.1 Score=34.58 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.4
Q ss_pred CCccCCCCcccccCceeccCc
Q 006877 248 DDFRCPISLELMKDPVIVSTG 268 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg 268 (627)
++-+||||++..-+.|.+-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999987543
No 409
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.35 E-value=17 Score=33.18 Aligned_cols=46 Identities=20% Similarity=0.543 Sum_probs=31.8
Q ss_pred ccCCCCccccc-----Ccee--ccCcccccHHHHHHHHHh-----CC-----CCCCCcccccc
Q 006877 250 FRCPISLELMK-----DPVI--VSTGQTYERSCIQKWLDA-----GH-----KTCPKTQQTLL 295 (627)
Q Consensus 250 f~Cpic~~~m~-----dPv~--~~cg~t~~r~ci~~~~~~-----~~-----~~CP~~~~~l~ 295 (627)
-.|-||--+-- |.+. +.||+.|..-|+..|+.. .. ..||.|..++.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 35777754332 3332 579999999999999983 11 36999987764
No 410
>PRK12495 hypothetical protein; Provisional
Probab=45.16 E-value=16 Score=34.85 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=14.6
Q ss_pred CCccCCCCcccccCceeccCcccccHHH
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSC 275 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~c 275 (627)
-.+.|+.|+..+. .-.|.+||-.|
T Consensus 41 sa~hC~~CG~PIp----a~pG~~~Cp~C 64 (226)
T PRK12495 41 TNAHCDECGDPIF----RHDGQEFCPTC 64 (226)
T ss_pred chhhcccccCccc----CCCCeeECCCC
Confidence 4567888877554 12466666665
No 411
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=44.07 E-value=1.4e+02 Score=32.89 Aligned_cols=111 Identities=18% Similarity=0.261 Sum_probs=69.8
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH----HHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhc---
Q 006877 506 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK----TAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICT--- 577 (627)
Q Consensus 506 ~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~----~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~--- 577 (627)
.++|+.+++++. .+.+.+--+.++. +..++.. ..+.+.+.++.|+.+|.. .++..+.+|+.+|..+..
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 467777777775 3444454444444 3333333 334467999999999974 457789999988777643
Q ss_pred CC----------HHHHHHHHHcCcHHHHHHhhh--cCChHHHHHHHHHHHHHHhH
Q 006877 578 GD----------AEQLKIARELDAEEALKELSE--SGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 578 ~~----------~~~~~~~~~~g~i~~L~~l~~--~~~~~~k~~A~~lL~~l~~~ 620 (627)
+. ..-...+.....+..|++.+- .+...+.....-++..+++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 21 123455667778888888765 44444455555566677553
No 412
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=44.06 E-value=16 Score=43.28 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=35.4
Q ss_pred CccCCCCcccc-----cCceec--cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34899998753 356543 577779999997666679999999986654
No 413
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.41 E-value=5.7e+02 Score=29.64 Aligned_cols=103 Identities=20% Similarity=0.132 Sum_probs=69.0
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHH
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAI 544 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i 544 (627)
.+|..|..+-...-+.++..++.++++|..+.+.... .++..||.-|-++...+...|...|.+|.. ||..+..|
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 5677777776666688999999999998876554432 234567777877777777777777766654 67665444
Q ss_pred hhCCChHHHHHHHhc--CCHHHHHHHHHHHHHHhc
Q 006877 545 GQAEPIPVLMEVIRT--GSPRNRENAAAVLWAICT 577 (627)
Q Consensus 545 ~~~g~v~~Lv~lL~~--~~~~~~~~A~~~L~~L~~ 577 (627)
+ .-+.+++-. .+.+.+-+|+-.|..+..
T Consensus 380 i-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 380 I-----DEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred H-----HHHHHHHcccCccccceeehhhhhhhhHh
Confidence 3 334444543 345667778877776443
No 414
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=42.98 E-value=2.6e+02 Score=26.29 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=52.6
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccC-CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChh
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 539 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~ 539 (627)
-.+|.+++=|.+.+..-...|...+..|... ...+..=+=...|.+|-.-|.+.++++...++.+|..|+...+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4566666666666666666777777777665 3333333335678888888988999999999999999976544
No 415
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=42.76 E-value=1.9e+02 Score=30.57 Aligned_cols=174 Identities=13% Similarity=0.059 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHhhccC---CcchHHHhhcCChHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCchhhH
Q 006877 395 STDPRTQEHAVTALLNLSIN---DSNKGTIVNAGAIPDIVDVLKN-----------GSMEARENAAATLFSLSVIDENKV 460 (627)
Q Consensus 395 ~~~~~~~~~A~~~L~nLs~~---~~~k~~i~~~g~i~~Lv~lL~~-----------~~~e~~~~aa~~L~~Ls~~~~~~~ 460 (627)
..+..-|..|-..|.+.-.. ......+. .-++.+++.++. .+.++...|..+|..+-.+.....
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 44556666777777665332 12233332 224445544431 145677888888888877666555
Q ss_pred Hhhhh---CcHHHHHHHhccC--CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc-----CChhhHHHHHHH
Q 006877 461 AIGAA---GAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAI 530 (627)
Q Consensus 461 ~i~~~---g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~Al~~ 530 (627)
.+-.. -.+...+..+.++ +..+....++.|..=-.. ..+.....+..++..+.. ++..+..+++.+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS----PKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC----CcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 55544 2455556666544 334445555555432222 224444455555555432 456778889999
Q ss_pred HHHHhcChhhHHHHhhC--CChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 531 LAILASHQEGKTAIGQA--EPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 531 L~~L~~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
+.+|...... .|.+. .-++.++..+-+....++..|..++..+.
T Consensus 158 ~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 158 YKRLLSQFPQ--QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 9988874332 23322 25677777776666777777666665543
No 416
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=42.52 E-value=1.6e+02 Score=30.88 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=78.1
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccC-------CHHHHHHHHHHHHHhccCCCc
Q 006877 427 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDG-------TPRGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 427 i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~nL~~~~~~ 499 (627)
+..+++.+.+.+...+..|. .+|..+... ...+|.++.++.++ +.......+.++..|..++.-
T Consensus 180 f~~It~a~~~~~~~~r~~aL---~sL~tD~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l 250 (343)
T cd08050 180 FEEITEALVGSNEEKRREAL---QSLRTDPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL 250 (343)
T ss_pred HHHHHHHHhCCCHHHHHHHH---HHhccCCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence 44555555555555555444 344433311 13456666666542 345566677778888887766
Q ss_pred hHHHHHcCChHHHHHhhcc----------CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC-CHH-HHHH
Q 006877 500 KARAVRAGIVPPLMRFLKD----------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG-SPR-NREN 567 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~~----------~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~-~~~~ 567 (627)
.....=+-++|.++..+.. .+..+++.|..+|..+|..-.....-+....+..+.+.+.+. .+. .+--
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 5554445588888877733 234678999999999997422211111222333455544432 232 3555
Q ss_pred HHHHHHHHh
Q 006877 568 AAAVLWAIC 576 (627)
Q Consensus 568 A~~~L~~L~ 576 (627)
|+..|..|.
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 666666554
No 417
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=42.45 E-value=3.4e+02 Score=26.55 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCC-------------HH-H----HHHHHHHHHHhcCCchhh
Q 006877 398 PRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGS-------------ME-A----RENAAATLFSLSVIDENK 459 (627)
Q Consensus 398 ~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-------------~e-~----~~~aa~~L~~Ls~~~~~~ 459 (627)
......++..+..|...+++...+...+.++.+.+.|..-+ ++ + ...=...++.||.+..+.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 34445566667777666776666667788888888775321 11 1 122236677788888888
Q ss_pred HHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHh
Q 006877 460 VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILA 535 (627)
Q Consensus 460 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~ 535 (627)
..+-+.+.+..+.+++...+. -.....+|.+|=...++..+.+ |-+.|..++..++..|...|..+.
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~i-------LsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRII-------LSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHHH-------HHHHHhcCCHHHHHHHHHHHHHHh
Confidence 788888999999999877533 1222235666654444444433 455677788888888888887664
No 418
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.21 E-value=3.3e+02 Score=31.18 Aligned_cols=144 Identities=18% Similarity=0.175 Sum_probs=87.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCC--chh-hH---HhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH
Q 006877 428 PDIVDVLKNGSMEARENAAATLFSLSVI--DEN-KV---AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 501 (627)
Q Consensus 428 ~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~--~~~-~~---~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 501 (627)
|.|-+-|+-.+.+++.+|+.+++++-.. ++. ++ .+.+ .-+..|..+|.++-+.++-.|..-++.... --.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 4455667778889999999999988432 221 22 2222 456788899998877777666554443322 112
Q ss_pred HHHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 502 RAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
.++-..++..|+.-+.+ +..+++-.....|-.+..+|..-..+- -++|.+=..|+..+.++|-.++.+|..+-
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 33333444444444432 334555556666666666665443332 24566666677788999999999888765
Q ss_pred c
Q 006877 577 T 577 (627)
Q Consensus 577 ~ 577 (627)
.
T Consensus 331 ~ 331 (1005)
T KOG1949|consen 331 A 331 (1005)
T ss_pred h
Confidence 4
No 419
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=42.17 E-value=5.9e+02 Score=29.31 Aligned_cols=191 Identities=18% Similarity=0.208 Sum_probs=104.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
.+..|...+-+.+...+..+.+.|..++..++. -++..+..+|.. .+++-...++..+..++. ....
T Consensus 182 ~~~~Lc~~lL~~n~~r~~w~~rLL~lL~~~~Ps--------i~~~~~~~lL~~A~~~~~l~lli~L~~~~~~----~~~~ 249 (696)
T PF14838_consen 182 HITELCKELLSLNRKRQQWAHRLLCLLSSQHPS--------IAIEAISYLLTKAQNPEHLALLIRLYAGLSV----VNFP 249 (696)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc--------hHHHHHHHHHHhcCCHHHHHHHHHHHhcccC----Cccc
Confidence 444566555566777788888888888854443 223444455544 355555555555555543 1111
Q ss_pred hhcCChHHHHHH-Hcc---CCHHHHHHHHHHHHHhc---CCc--------hhhHHhhhh--CcHHHHHHHhccCCHHHHH
Q 006877 422 VNAGAIPDIVDV-LKN---GSMEARENAAATLFSLS---VID--------ENKVAIGAA--GAIPALIRLLCDGTPRGKK 484 (627)
Q Consensus 422 ~~~g~i~~Lv~l-L~~---~~~e~~~~aa~~L~~Ls---~~~--------~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~ 484 (627)
.-.|.++..++- +.. +. -....+..++.||. ..+ .....+.++ +.++.+..+|..++.+...
T Consensus 250 ~~~~l~~~vle~~l~~i~~~~-lt~~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~Al~~~L~~i~~lL~~~~~~~~~ 328 (696)
T PF14838_consen 250 SLPGLFPAVLEQCLRQIHTNT-LTPTEATQLLQNLALLAKWEKSGNVPPASMSSQLTQALSSHLPDIAQLLLHSDPEVAH 328 (696)
T ss_pred cccchHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence 124444443322 221 11 12344555666653 111 123344444 7889999999888999999
Q ss_pred HHHHHHHHhccCCC---chHHHH--HcCChHHHHHhhccC----ChhhHHHHHHHHHHHhcC-hhhHHHHhh
Q 006877 485 DAATAIFNLSIYQG---NKARAV--RAGIVPPLMRFLKDA----GGGMVDEALAILAILASH-QEGKTAIGQ 546 (627)
Q Consensus 485 ~a~~aL~nL~~~~~---~~~~l~--~~g~v~~Lv~lL~~~----~~~~~~~Al~~L~~L~~~-~~~~~~i~~ 546 (627)
.++..|..+-.... +-..+. ..-.|....-.|... .......+...|..+|.. +.++..+.+
T Consensus 329 ~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~~s~~a~~~vLr 400 (696)
T PF14838_consen 329 AAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCSYSPAARKAVLR 400 (696)
T ss_pred HHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 99999888876542 111221 112233333333322 223456788899999987 566665543
No 420
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=42.04 E-value=12 Score=26.38 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=19.9
Q ss_pred cCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 266 STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 266 ~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
...|-.|..|+...+. ....||.|+.+++..
T Consensus 18 C~dHYLCl~CLt~ml~-~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 18 CSDHYLCLNCLTLMLS-RSDRCPICGKPLPTK 48 (50)
T ss_dssp -SS-EEEHHHHHHT-S-SSSEETTTTEE----
T ss_pred ecchhHHHHHHHHHhc-cccCCCcccCcCccc
Confidence 4457789999988876 556799999988754
No 421
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=41.81 E-value=13 Score=39.91 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=43.7
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 558 RTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 558 ~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
...++++++.|..++.+++......+..+-+...-..+++++...-+++-+.|..++..+.+
T Consensus 338 a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 338 AHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred cccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 34679999999999999988754333333344455567777777777777777777776654
No 422
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=41.79 E-value=11 Score=34.03 Aligned_cols=23 Identities=30% Similarity=0.813 Sum_probs=17.1
Q ss_pred cCcccccHHHHHHHHHh----------CCCCCCCcccc
Q 006877 266 STGQTYERSCIQKWLDA----------GHKTCPKTQQT 293 (627)
Q Consensus 266 ~cg~t~~r~ci~~~~~~----------~~~~CP~~~~~ 293 (627)
.+||+|+ .||.. |-.+||.|+..
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCC
Confidence 4688886 48863 56799999854
No 423
>PLN02195 cellulose synthase A
Probab=41.70 E-value=19 Score=42.29 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=34.9
Q ss_pred cCCCCcccc-----cCceec--cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 251 RCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 251 ~Cpic~~~m-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 699998733 466654 588889999997666679999999987665
No 424
>PF04641 Rtf2: Rtf2 RING-finger
Probab=41.44 E-value=22 Score=35.57 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=31.7
Q ss_pred CCccCCCCcccccCceec-cCcccccHHHHHHHHHhC
Q 006877 248 DDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAG 283 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~ 283 (627)
.-+.|+|+++.+.+||+. .-|+-|....|-+|+...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 457899999999999864 689999999999999854
No 425
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=41.39 E-value=1e+02 Score=24.39 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=51.4
Q ss_pred hhhhhhHHHHHHHHhhhhhhHHhhhhcCCCCChHHHHhHHHHHHHHHHHHHHHHh-cCCCchhHHHHhhHHHHHH
Q 006877 29 NFFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKS-TNDGSKLYQCLQRDKIAAQ 102 (627)
Q Consensus 29 ~~~~~~~~~l~~~~~ll~~~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~-c~~~Skl~ll~~~~~~~~~ 102 (627)
...+++...|++.+..+.++++.+...+ -+++.-...+......-++++.|+.. .++|++.|-.+ ++.+...
T Consensus 2 ~~L~~~r~~Lv~~l~~~~~ild~L~~~~-vlt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~F-~~~L~~~ 74 (85)
T PF00619_consen 2 ELLRKNRQELVEDLDDLDDILDHLLSRG-VLTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDIF-CQALREN 74 (85)
T ss_dssp HHHHHTHHHHHHHSSHHHHHHHHHHHTT-SSSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHH
T ss_pred HHHHHhHHHHHHHhCcHHHHHHHHHHCC-CCCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHHH-HHHHHhh
Confidence 3567888899999988999999998765 44555555555556677889999888 56777775544 3444333
No 426
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=41.26 E-value=19 Score=42.65 Aligned_cols=47 Identities=15% Similarity=0.364 Sum_probs=36.0
Q ss_pred CccCCCCcccc-----cCceec--cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45799998743 366553 577779999997666779999999987664
No 427
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.76 E-value=22 Score=38.65 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=29.9
Q ss_pred CCCccCCCCcccccC-ceeccCcccccHHHHHHHHHh
Q 006877 247 PDDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLDA 282 (627)
Q Consensus 247 ~~~f~Cpic~~~m~d-Pv~~~cg~t~~r~ci~~~~~~ 282 (627)
.....|.||.+-..+ .+.+.|||-||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456889999888775 555799999999999999874
No 428
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.68 E-value=95 Score=29.28 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=54.7
Q ss_pred ChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh-CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH
Q 006877 508 IVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL 583 (627)
Q Consensus 508 ~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~ 583 (627)
.++.++++..+.+..+...|+.++..+.... ++. ..++|.|+.+..++++.++..|...+..+....++..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-----LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG-----LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-----CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 3566777777788888888998888776521 111 1378999999999999999999999999998877533
No 429
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=40.39 E-value=21 Score=42.49 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=30.1
Q ss_pred CCCCCCCCccCCCCc--ccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 242 RSPVIPDDFRCPISL--ELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~--~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
...++|+.+.||-|+ +...|+- . |.-|+ -..+.||.|+.++..+
T Consensus 907 EVNPL~PHY~Cp~Cky~Ef~~d~s-v--gsGfD---------LpdK~CPkCg~pl~kD 952 (1444)
T COG2176 907 EVNPLPPHYLCPECKYSEFIDDGS-V--GSGFD---------LPDKDCPKCGTPLKKD 952 (1444)
T ss_pred ccCCCCccccCCCCceeeeecCCC-c--CCCCC---------CCCCCCCcCCCccccC
Confidence 345788999999996 4666652 2 22233 3678999999887643
No 430
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.17 E-value=15 Score=29.56 Aligned_cols=13 Identities=23% Similarity=0.917 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHh
Q 006877 270 TYERSCIQKWLDA 282 (627)
Q Consensus 270 t~~r~ci~~~~~~ 282 (627)
.|||.|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 431
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=40.10 E-value=6.5e+02 Score=29.17 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=82.6
Q ss_pred cCCHHHHHHHhcC--------CCHHHHHHHHHHHHhhcc--C-CcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHH
Q 006877 383 AGAIPLLVELLSS--------TDPRTQEHAVTALLNLSI--N-DSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS 451 (627)
Q Consensus 383 ~g~i~~Lv~lL~~--------~~~~~~~~A~~~L~nLs~--~-~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~ 451 (627)
.|.++.++..|.. +++.-.+-|+..+.++.. . +..-..+++.=+++.++-.+++...-.+..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 5889999999932 133444567777777643 2 2233444455566777777788888888899999888
Q ss_pred hcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHH
Q 006877 452 LSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAV 504 (627)
Q Consensus 452 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~ 504 (627)
++ .+.+..-....+.....+.+++++..+...|+-||.-+..+......+-
T Consensus 487 ~e--eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 487 IE--EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred HH--HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHH
Confidence 83 3445555555677778888888888888889999988887764444433
No 432
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=39.79 E-value=14 Score=26.57 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=11.4
Q ss_pred CCCCCccCCCCcc
Q 006877 245 VIPDDFRCPISLE 257 (627)
Q Consensus 245 ~~~~~f~Cpic~~ 257 (627)
.+|++|.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 5899999999974
No 433
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=39.66 E-value=5.5e+02 Score=31.66 Aligned_cols=233 Identities=17% Similarity=0.102 Sum_probs=120.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHH-HHHhcCCHHHHHHHhc---CC-------CHHHHHHHHHHHH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLS---ST-------DPRTQEHAVTALL 409 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL~---~~-------~~~~~~~A~~~L~ 409 (627)
.+.++.|+..+-+..|+++.-+.-.++.+.+.....-. ...+.- +-.++..+. -+ -..+++..+++|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~-~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDL-LIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHH-HHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 35788888888888999998888888877653321111 111111 111111110 01 1246777778887
Q ss_pred hhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHH-hcCCchhhHHhhh--hCcHHHHHHHhccCCHHHHHHH
Q 006877 410 NLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFS-LSVIDENKVAIGA--AGAIPALIRLLCDGTPRGKKDA 486 (627)
Q Consensus 410 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~-Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a 486 (627)
.+..+-.... -...++.+..++.....+++.-.+..+.+ ++. ....+.. ..+++..+.-|.+.+..++.-|
T Consensus 155 ~~l~~~~~s~---~~~~~~il~q~~~q~~w~ir~Ggll~iky~~ai---r~d~l~~~~~~vl~~~i~~L~ds~ddv~~~a 228 (1549)
T KOG0392|consen 155 AYLKHMDESL---IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAI---RQDLLFQLLNLVLDFVIEGLEDSDDDVRSVA 228 (1549)
T ss_pred HHHHhhhhHh---hHHHHHHHHHHHcCcchhheechHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence 7765421100 01234455555555544443322222211 110 0001111 1345666666777777888878
Q ss_pred HHHHHHhccCCCchHHHHHcCChHHHHHhhccCCh--hhHHHHHHHHHHHhcChhhHHHH----hhCCChHHHHHHHhcC
Q 006877 487 ATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGG--GMVDEALAILAILASHQEGKTAI----GQAEPIPVLMEVIRTG 560 (627)
Q Consensus 487 ~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~--~~~~~Al~~L~~L~~~~~~~~~i----~~~g~v~~Lv~lL~~~ 560 (627)
+.++........+...---.-++..+..++..-+. .-.......+..++...+..... ...|.+|.+..++++.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 77777665433111100001233334443322111 11233455556666655332222 1248899999999988
Q ss_pred CHHHHHHHHHHHHHHhcCCH
Q 006877 561 SPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 561 ~~~~~~~A~~~L~~L~~~~~ 580 (627)
-..++..+...+..|...++
T Consensus 309 i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 88889999999888876553
No 434
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.34 E-value=1.6e+02 Score=32.20 Aligned_cols=69 Identities=19% Similarity=0.112 Sum_probs=58.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHH-HHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHh
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRV-CIAEAGAIPLLVELLSST--DPRTQEHAVTALLN 410 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~n 410 (627)
.++..|.+.+.+.++.+|..|+..|-.+.+.+..... .|++.++++-+|++.+.. +..+|+.++..|-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 5889999999988889999999999988887766655 788889999999998775 77899988887753
No 435
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=38.74 E-value=1.5e+02 Score=25.23 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=49.8
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhh---hc---CChHHHHHHHHHHHHH
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELS---ES---GTDRAKRKAGSILELL 617 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~---~~---~~~~~k~~A~~lL~~l 617 (627)
++..|..-|.+.++.++-.|..+|-.++.+.++ ....+.....+..++.+. .. .+..+++++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 566677777788999999999999999998875 445565655555554431 11 2578899999888764
No 436
>PRK04023 DNA polymerase II large subunit; Validated
Probab=38.68 E-value=24 Score=41.37 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=31.6
Q ss_pred CCccCCCCcccccCceeccCcc-----cccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 248 DDFRCPISLELMKDPVIVSTGQ-----TYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~-----t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
....||-|+..........||. .||..| .+.. +...||.|+......
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~-~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEV-EEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcC-CCCcCCCCCCCCCcc
Confidence 4578999988764333345884 489988 3332 446799999887644
No 437
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=38.08 E-value=22 Score=29.05 Aligned_cols=37 Identities=22% Similarity=0.557 Sum_probs=28.1
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.-.|-+|..-...| |+.||..|-. . ...|.+|+..+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY---k--kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY---K--KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhc---c--cCcccccCCeec
Confidence 44799999877655 8899999932 2 247999998874
No 438
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=38.03 E-value=3.4e+02 Score=31.67 Aligned_cols=124 Identities=13% Similarity=0.098 Sum_probs=80.6
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHH
Q 006877 466 GAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAI 544 (627)
Q Consensus 466 g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i 544 (627)
.....+...+.+++.......+.++.+++.-..-...- ...-+++-.......-..+.+....+|..++. .++....+
T Consensus 441 ~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l 519 (727)
T PF12726_consen 441 NLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKEL 519 (727)
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34556666677778888888899998887643211111 11122222222222234456778888888888 45665555
Q ss_pred h-hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHcC
Q 006877 545 G-QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA--EQLKIARELD 590 (627)
Q Consensus 545 ~-~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~--~~~~~~~~~g 590 (627)
. +.++...++.++-++++++.+.|..+|......+. +....+.+..
T Consensus 520 ~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~ 568 (727)
T PF12726_consen 520 LSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSN 568 (727)
T ss_pred HcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 5 45889999999999999999999999999886443 3445555443
No 439
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=37.98 E-value=35 Score=30.88 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=22.4
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHH-HhCCCCCCCccccccC
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWL-DAGHKTCPKTQQTLLH 296 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~-~~~~~~CP~~~~~l~~ 296 (627)
...|.||-|+..+. -.-..... ..|.+.||.|+..+..
T Consensus 97 ~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEE
Confidence 46889998775543 11111111 1255899999988754
No 440
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=37.75 E-value=26 Score=35.14 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=21.2
Q ss_pred ccCcccccHHHHHHHHHh---------CCCCCCCccccccC
Q 006877 265 VSTGQTYERSCIQKWLDA---------GHKTCPKTQQTLLH 296 (627)
Q Consensus 265 ~~cg~t~~r~ci~~~~~~---------~~~~CP~~~~~l~~ 296 (627)
.||||. |..---+||.. .+..||.|...+..
T Consensus 376 ~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 376 NPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred CCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 489996 65555666653 23579999877653
No 441
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=37.41 E-value=3e+02 Score=24.59 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=57.2
Q ss_pred HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCHHH-HHHHhcC---CCHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPL-LVELLSS---TDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~-Lv~lL~~---~~~~~~~~A~~~L~nLs~ 413 (627)
...+..+.+.|.+ .++.++..|+..|-.+.+++. .....++..+++.. |++++.. .+..++...+..+...+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 5688999999984 588899999999999998654 44556777789987 9999963 245788888888877653
No 442
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=37.25 E-value=5.9 Score=40.41 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=20.9
Q ss_pred CCccCCCCcccccCceeccC---c--ccccHHHHHHHHHhCCCCCCCcccc
Q 006877 248 DDFRCPISLELMKDPVIVST---G--QTYERSCIQKWLDAGHKTCPKTQQT 293 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~c---g--~t~~r~ci~~~~~~~~~~CP~~~~~ 293 (627)
..-.||+|+....--++..- | +-+|..|=..|-- ....||.|+..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 34689999986554444433 5 4578888888865 45679999854
No 443
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=36.70 E-value=1.5e+02 Score=30.81 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCchhhHHhhhhC--cHHHHHHHhccC---CHHHHHHHHHHHHHhccCCCchHHHH-------HcC
Q 006877 440 EARENAAATLFSLSVIDENKVAIGAAG--AIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGNKARAV-------RAG 507 (627)
Q Consensus 440 e~~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~l~-------~~g 507 (627)
.+|-.|..++..+.........+...+ .+..|++++..+ ...++..|+.+|..|+........++ .+|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 456677777777776667777777764 899999999865 46788899999999998765555444 356
Q ss_pred ChHHHHHh
Q 006877 508 IVPPLMRF 515 (627)
Q Consensus 508 ~v~~Lv~l 515 (627)
++..+++.
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66666554
No 444
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=36.41 E-value=16 Score=26.04 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=8.4
Q ss_pred CCCCCccCCCCcc
Q 006877 245 VIPDDFRCPISLE 257 (627)
Q Consensus 245 ~~~~~f~Cpic~~ 257 (627)
.+|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 6899999999964
No 445
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.39 E-value=24 Score=39.75 Aligned_cols=44 Identities=23% Similarity=0.590 Sum_probs=31.5
Q ss_pred CccCCCCcccccCce--eccCcccccHHHHHHHHHhCCCCCCC-cccc
Q 006877 249 DFRCPISLELMKDPV--IVSTGQTYERSCIQKWLDAGHKTCPK-TQQT 293 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv--~~~cg~t~~r~ci~~~~~~~~~~CP~-~~~~ 293 (627)
.|.|.+|.--.+--- ...|||....+|...||..|. .||. |+-.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC~ 1074 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGCH 1074 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCcC
Confidence 467888865444332 247999999999999999654 7985 6543
No 446
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=36.01 E-value=20 Score=36.16 Aligned_cols=25 Identities=12% Similarity=0.538 Sum_probs=16.4
Q ss_pred CccCCCCccccc--Cc-eeccCcccccH
Q 006877 249 DFRCPISLELMK--DP-VIVSTGQTYER 273 (627)
Q Consensus 249 ~f~Cpic~~~m~--dP-v~~~cg~t~~r 273 (627)
.|.||+|+..|. +. ..-+.||+|+.
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 489999999884 22 22245677754
No 447
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=35.64 E-value=42 Score=30.30 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=17.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHH
Q 006877 550 IPVLMEVIRTGSPRNRENAAAVLWA 574 (627)
Q Consensus 550 v~~Lv~lL~~~~~~~~~~A~~~L~~ 574 (627)
|..|+++|.+.++.+...|+.+|.+
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~ 120 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKN 120 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 7888888887777888888888865
No 448
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.60 E-value=7.3e+02 Score=28.43 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=54.9
Q ss_pred HHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc------CCHHHHHHHHHcCcHHHHHHhhhcC----ChHHHHHH
Q 006877 541 KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT------GDAEQLKIARELDAEEALKELSESG----TDRAKRKA 610 (627)
Q Consensus 541 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~------~~~~~~~~~~~~g~i~~L~~l~~~~----~~~~k~~A 610 (627)
|..+.+...++...++.++-.+...+.|..+|..+++ ++++....+. ..+.-..++++++ ++..-..-
T Consensus 248 Rs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~--~Lv~Gvk~il~np~~LsD~~nyHeF 325 (1082)
T KOG1410|consen 248 RSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ--HLVEGVKRILENPQGLSDPANYHEF 325 (1082)
T ss_pred HHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHHhCCcCCCCcchHHHH
Confidence 4555666678888888888888888999999999886 3333222221 2444455666665 56677778
Q ss_pred HHHHHHHHhHHhh
Q 006877 611 GSILELLQRIDMA 623 (627)
Q Consensus 611 ~~lL~~l~~~~~~ 623 (627)
.++|..++.++++
T Consensus 326 CRllaRlktNYQL 338 (1082)
T KOG1410|consen 326 CRLLARLKTNYQL 338 (1082)
T ss_pred HHHHHHHHhhhhh
Confidence 8888888766554
No 449
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=35.51 E-value=33 Score=39.05 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=36.3
Q ss_pred CCCccCCCCc--ccccCceeccCccc-----ccHHHHHHHHHh-CCCCCCCcccccc
Q 006877 247 PDDFRCPISL--ELMKDPVIVSTGQT-----YERSCIQKWLDA-GHKTCPKTQQTLL 295 (627)
Q Consensus 247 ~~~f~Cpic~--~~m~dPv~~~cg~t-----~~r~ci~~~~~~-~~~~CP~~~~~l~ 295 (627)
.++-.|.||. ..--||-.-||.++ ..++|+.+|..- +...|-.|..+..
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 3557899986 35567877777654 578999999984 4578999987764
No 450
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=35.14 E-value=2.2e+02 Score=28.50 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHhcC
Q 006877 521 GGMVDEALAILAILASH 537 (627)
Q Consensus 521 ~~~~~~Al~~L~~L~~~ 537 (627)
..+.+.++..+.|+..-
T Consensus 134 ~~ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 134 NLIIELVLTLIRNLLAI 150 (266)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44566777777777664
No 451
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.01 E-value=28 Score=22.56 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=7.4
Q ss_pred CCCCCCCcccc
Q 006877 283 GHKTCPKTQQT 293 (627)
Q Consensus 283 ~~~~CP~~~~~ 293 (627)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 44578888753
No 452
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.00 E-value=6.4e+02 Score=27.58 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=36.9
Q ss_pred ChHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC------ChHHHHHHHHHHHHHH
Q 006877 549 PIPVLMEVIRT--GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG------TDRAKRKAGSILELLQ 618 (627)
Q Consensus 549 ~v~~Lv~lL~~--~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~------~~~~k~~A~~lL~~l~ 618 (627)
.++.++..|.+ +.......+-.++.||+...-.+ -.+..|+.++.++ +.++-+-|..+++.+-
T Consensus 214 sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll 284 (464)
T PF11864_consen 214 SLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLL 284 (464)
T ss_pred HHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHH
Confidence 34555666653 33466777788888888654211 1456677777322 3555566766666553
No 453
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=34.94 E-value=27 Score=29.55 Aligned_cols=20 Identities=40% Similarity=0.921 Sum_probs=15.5
Q ss_pred Cceec---cCcccccHHHHHHHHH
Q 006877 261 DPVIV---STGQTYERSCIQKWLD 281 (627)
Q Consensus 261 dPv~~---~cg~t~~r~ci~~~~~ 281 (627)
.||.+ +|+ |.||.|+++|..
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 67765 455 469999999986
No 454
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.58 E-value=21 Score=21.85 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=4.0
Q ss_pred CCCCcccc
Q 006877 252 CPISLELM 259 (627)
Q Consensus 252 Cpic~~~m 259 (627)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555443
No 455
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.29 E-value=24 Score=26.46 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=12.3
Q ss_pred CCCCCCCccccccCC
Q 006877 283 GHKTCPKTQQTLLHT 297 (627)
Q Consensus 283 ~~~~CP~~~~~l~~~ 297 (627)
.|++||.|+.+++.+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 578999999988754
No 456
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.18 E-value=2.6e+02 Score=29.24 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-------CHHHHHHHHHHHHhhccCC
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-------DPRTQEHAVTALLNLSIND 415 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~~L~nLs~~~ 415 (627)
....+...+.+.+...+..|+..|+.-.. -.-.+|.++.++... +.......+.++..|..++
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~tD~g----------l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRTDPG----------LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhccCCC----------chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 34444455545555555555554433221 123567777777542 4455555566666666655
Q ss_pred cchHHHhhcCChHHHHHHHcc----------CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCC--HHHH
Q 006877 416 SNKGTIVNAGAIPDIVDVLKN----------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT--PRGK 483 (627)
Q Consensus 416 ~~k~~i~~~g~i~~Lv~lL~~----------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~ 483 (627)
.-.-..--+-.++.++.++-. ....+|+.|+.+|..++..-...-.-.....+..|.+.+.+.. ....
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~ 328 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTH 328 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchh
Confidence 433222222367777766621 2367899999999988643222111122334445555555432 2334
Q ss_pred HHHHHHHHHh
Q 006877 484 KDAATAIFNL 493 (627)
Q Consensus 484 ~~a~~aL~nL 493 (627)
.-|+..|..|
T Consensus 329 YGAi~GL~~l 338 (343)
T cd08050 329 YGAIVGLSAL 338 (343)
T ss_pred hHHHHHHHHh
Confidence 4455555544
No 457
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=33.89 E-value=97 Score=26.65 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=31.3
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR 587 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 587 (627)
+++.|+.-|...++.+...|+.+|...|... .....++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5788899998899999999999999999877 4444444
No 458
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=33.67 E-value=3.8e+02 Score=28.59 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=75.6
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc---c-------CCHHHHHHHHHHHHHhccC
Q 006877 428 PDIVDVLKNGS-MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---D-------GTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 428 ~~Lv~lL~~~~-~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------~~~~~~~~a~~aL~nL~~~ 496 (627)
..|.++|..|. ...+..++.++.-||.+...-.-+....-...|+.+.. + .+..+...++..|+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 44566666654 33344555666666655433322222222223332221 1 1347788899999999987
Q ss_pred CC-chHHHHHcCChHHHHHhhccC----C-hhhHHHHHHHHHHHhc-ChhhHHHHh-hCCChHHHHHHHhc
Q 006877 497 QG-NKARAVRAGIVPPLMRFLKDA----G-GGMVDEALAILAILAS-HQEGKTAIG-QAEPIPVLMEVIRT 559 (627)
Q Consensus 497 ~~-~~~~l~~~g~v~~Lv~lL~~~----~-~~~~~~Al~~L~~L~~-~~~~~~~i~-~~g~v~~Lv~lL~~ 559 (627)
.. .+....+...+..+++.+... . ..+.-.=+..|..|.. ..+.|..+. +.++++.+...+..
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 65 444566777777777776431 1 1233344555555544 456676654 56889999998863
No 459
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=33.60 E-value=24 Score=34.96 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=29.6
Q ss_pred CCCccCCCCccccc-C------------cee-ccCcccccHHHHHHHHHhCC---------CCCCCccccccCC
Q 006877 247 PDDFRCPISLELMK-D------------PVI-VSTGQTYERSCIQKWLDAGH---------KTCPKTQQTLLHT 297 (627)
Q Consensus 247 ~~~f~Cpic~~~m~-d------------Pv~-~~cg~t~~r~ci~~~~~~~~---------~~CP~~~~~l~~~ 297 (627)
+..|.|+.|...+. - |.. .-||-.|-| .|+-.|+ +.||.|++.+.+.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSR----PWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSR----PWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccc----hHHhhcccccccCCCCccCCcccchhcch
Confidence 56799999976543 1 111 235555655 4766543 6899999887643
No 460
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=32.50 E-value=4.3e+02 Score=24.85 Aligned_cols=140 Identities=19% Similarity=0.158 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhhh-Ch----hhHHHHHh------cCCHHHHHH-HhcCCCHHHHHHHHHHHHhhccCCcchHHHhh--
Q 006877 358 EQRAAAGELRLLAKR-NA----DNRVCIAE------AGAIPLLVE-LLSSTDPRTQEHAVTALLNLSINDSNKGTIVN-- 423 (627)
Q Consensus 358 ~~~~a~~~L~~L~~~-~~----~~r~~i~~------~g~i~~Lv~-lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~-- 423 (627)
++..|+..|..+++. .. .++..+.- .+.-+.|+. ++.++++.+|..|+.+|..|-.....--..++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 456777788777764 21 11222221 123444444 55778999999999999887543211111111
Q ss_pred ---cCCh---------------HHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHH-hhh-hCcHHHHHHHhccCCHHH
Q 006877 424 ---AGAI---------------PDIVDVLKNG-SMEARENAAATLFSLSVIDENKVA-IGA-AGAIPALIRLLCDGTPRG 482 (627)
Q Consensus 424 ---~g~i---------------~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~~~~~~-i~~-~g~i~~Lv~lL~~~~~~~ 482 (627)
.+.+ ..|+..|... +.........+|..|...-.+... .+= ...+..+..++.+.|..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1112 2234444433 455666677777777655443222 111 134444455666678888
Q ss_pred HHHHHHHHHHhccCC
Q 006877 483 KKDAATAIFNLSIYQ 497 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~ 497 (627)
+..++.++..|....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 888888888776543
No 461
>PLN02400 cellulose synthase
Probab=32.48 E-value=22 Score=42.28 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=35.2
Q ss_pred CccCCCCcccc-----cCceec--cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELM-----KDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m-----~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 44899998753 356543 577779999997656678999999987654
No 462
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=32.30 E-value=3.9e+02 Score=24.41 Aligned_cols=78 Identities=15% Similarity=0.285 Sum_probs=54.7
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh-CC-ChHHHHH-HHhcCC--HHHHHHHHHHHHHH
Q 006877 501 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ-AE-PIPVLME-VIRTGS--PRNRENAAAVLWAI 575 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~-~g-~v~~Lv~-lL~~~~--~~~~~~A~~~L~~L 575 (627)
..+++..+.+.|++.+.+.+..+...++.++..+... -+..+.. -+ .+..++. ++.+.+ ..-|+.+..++..+
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3466777888888888777788899999999999853 2322221 12 3455555 666443 46788899999999
Q ss_pred hcCCH
Q 006877 576 CTGDA 580 (627)
Q Consensus 576 ~~~~~ 580 (627)
|....
T Consensus 145 ~~~p~ 149 (168)
T PF12783_consen 145 CKDPQ 149 (168)
T ss_pred HhChh
Confidence 98653
No 463
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=32.05 E-value=8.4e+02 Score=28.12 Aligned_cols=82 Identities=10% Similarity=0.186 Sum_probs=54.2
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcChh---hHHHHh--hCCChHHHHHHHhcCCH----HHHHHHHHHHHHHhc
Q 006877 507 GIVPPLMRFLKDAGGGMVDEALAILAILASHQE---GKTAIG--QAEPIPVLMEVIRTGSP----RNRENAAAVLWAICT 577 (627)
Q Consensus 507 g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~---~~~~i~--~~g~v~~Lv~lL~~~~~----~~~~~A~~~L~~L~~ 577 (627)
+-++.+..+|..++.++...++.+|..+-.... .-..+. ..-.|..+...|+..+. ..-..+...|..+|.
T Consensus 310 ~~L~~i~~lL~~~~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~~l~~ 389 (696)
T PF14838_consen 310 SHLPDIAQLLLHSDPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLSRLCS 389 (696)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHc
Confidence 467788888988899999999988887765432 122222 12356666666665432 244578899999999
Q ss_pred CCHHHHHHHHH
Q 006877 578 GDAEQLKIARE 588 (627)
Q Consensus 578 ~~~~~~~~~~~ 588 (627)
.++.....+.+
T Consensus 390 ~s~~a~~~vLr 400 (696)
T PF14838_consen 390 YSPAARKAVLR 400 (696)
T ss_pred cCchHHHHHHH
Confidence 98765554443
No 464
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.65 E-value=26 Score=37.57 Aligned_cols=66 Identities=23% Similarity=0.424 Sum_probs=45.8
Q ss_pred CCCCCccCCCC-cccccCceec--cCcccccHHHHHHHHHhCCCCCCCcccc-ccCCCCCccHHHHhhhHHH
Q 006877 245 VIPDDFRCPIS-LELMKDPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQT-LLHTALTPNYVLKSLIALW 312 (627)
Q Consensus 245 ~~~~~f~Cpic-~~~m~dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~-l~~~~l~~n~~l~~~i~~~ 312 (627)
..+++..||+| .+.|.+-+.+ .|+.+||..||.+.+.. ..||.|... .....+.++..++..+...
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~--~~~~~c~~~~~~~~~~~~p~~~r~~~n~~ 284 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALIS--KSMCVCGASNVLADDLLPPKTLRDTINRI 284 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCcccccccccc--ccCCcchhhcccccccCCchhhHHHHHHH
Confidence 56789999999 7888888776 68999999999887753 345555432 2233456666666665543
No 465
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=31.01 E-value=1.5e+02 Score=30.75 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhccCCcchHHHhhcC--ChHHHHHHHccC---CHHHHHHHHHHHHHhcCCchhhHHhhhh-------C
Q 006877 399 RTQEHAVTALLNLSINDSNKGTIVNAG--AIPDIVDVLKNG---SMEARENAAATLFSLSVIDENKVAIGAA-------G 466 (627)
Q Consensus 399 ~~~~~A~~~L~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~~---~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-------g 466 (627)
.+|-.|+..+..+..+......+...+ .+..|+++++-+ ..+++..|..+|..++....-...+... |
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 456667777777766666667777554 999999999865 3688999999999998765333333321 5
Q ss_pred cHHHHHH
Q 006877 467 AIPALIR 473 (627)
Q Consensus 467 ~i~~Lv~ 473 (627)
.++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 6665554
No 466
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=30.74 E-value=2.9e+02 Score=24.75 Aligned_cols=71 Identities=10% Similarity=0.051 Sum_probs=53.2
Q ss_pred ChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHH-HHHhhhc-C--ChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRT-GSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEA-LKELSES-G--TDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~-L~~l~~~-~--~~~~k~~A~~lL~~l~~ 619 (627)
++..|-+-|.. .++.+...|..+|-.+..|.+. ....+...+.+.. |+.++.. . ...++.+...+++...+
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 56666666664 5788999999999999998874 4466677788886 8888863 2 35788888888877654
No 467
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.73 E-value=39 Score=34.94 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=35.1
Q ss_pred CccCCCCccccc---CceeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 249 DFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 249 ~f~Cpic~~~m~---dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
...|.|+++.|- -|+..|.|++|-...|..|-...+-.||.++..+..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 356777777774 477778888888888888766444778888776643
No 468
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.41 E-value=1.1e+02 Score=31.29 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=46.1
Q ss_pred ccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC--------------hhhHHHHHhcCCHHHHHHHhcC
Q 006877 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRN--------------ADNRVCIAEAGAIPLLVELLSS 395 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~--------------~~~r~~i~~~g~i~~Lv~lL~~ 395 (627)
.....+..++..|.+++...+..|++.|..++.+. ..|-..+.+.|+++.|+.+|+.
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34678999999999999999999999999988542 1455567788999999998864
No 469
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=30.20 E-value=5.7e+02 Score=25.58 Aligned_cols=146 Identities=21% Similarity=0.147 Sum_probs=76.1
Q ss_pred hHHHHHhcCCHH-HHHHHhcC--CCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 006877 376 NRVCIAEAGAIP-LLVELLSS--TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSL 452 (627)
Q Consensus 376 ~r~~i~~~g~i~-~Lv~lL~~--~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~L 452 (627)
.+..+++.++++ -|+.+|.+ +++.+-..++..|.+|..--+.- .+-.+ .+...+.........+
T Consensus 32 v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~-----~~~~~--------~~~~~~~~~~~l~~~l 98 (266)
T PF04821_consen 32 VRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL-----VESQP--------KDKNQRRNIPELLKYL 98 (266)
T ss_pred HHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh-----ccCCC--------CChHHHHHHHHHHHHH
Confidence 355666666665 46666654 37888899999999997421100 00000 0111222222222211
Q ss_pred cCCchhhHHhhhhCcHHHHHHHhcc-----------CCHHHHHHHHHHHHHhccCCCch-------------H----HHH
Q 006877 453 SVIDENKVAIGAAGAIPALIRLLCD-----------GTPRGKKDAATAIFNLSIYQGNK-------------A----RAV 504 (627)
Q Consensus 453 s~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~aL~nL~~~~~~~-------------~----~l~ 504 (627)
..+|..+...+++..++.++.. .+....+..+..+.|+..-++.. . .+.
T Consensus 99 ---~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~ 175 (266)
T PF04821_consen 99 ---QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALF 175 (266)
T ss_pred ---HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHH
Confidence 2456666666666666665532 12456778888999987653321 1 123
Q ss_pred HcCChHHHHHhhccC-ChhhHHHHHHHHHHHhcC
Q 006877 505 RAGIVPPLMRFLKDA-GGGMVDEALAILAILASH 537 (627)
Q Consensus 505 ~~g~v~~Lv~lL~~~-~~~~~~~Al~~L~~L~~~ 537 (627)
+.|+...|+.+..+. ........+.++..+-..
T Consensus 176 ~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 176 ESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
Confidence 456666666666553 223333455555555443
No 470
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=30.14 E-value=1.9e+02 Score=30.45 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=59.5
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhh-cCChHHHHHHHHHHHHHHh
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~-~~~~~~k~~A~~lL~~l~~ 619 (627)
.++..+.+-|.+.++.+...|+.+|..+..+.+. .+..+-.......|..++. +..++++++-..++....+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 3677888888889999999999999999988775 4466667788889999998 6688999988888877765
No 471
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=30.03 E-value=42 Score=28.45 Aligned_cols=52 Identities=17% Similarity=0.483 Sum_probs=30.0
Q ss_pred CCCCccCCCCcccccCceecc-Cc-----ccccHHHHHHHHHhCCCCCCCccccccCCC
Q 006877 246 IPDDFRCPISLELMKDPVIVS-TG-----QTYERSCIQKWLDAGHKTCPKTQQTLLHTA 298 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~-cg-----~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 298 (627)
+.+..+|||+++....-|.+. .+ .-|+...+.+....| ..=|.+|.++....
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~sM 94 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPSM 94 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTT
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChhh
Confidence 346689999999999998863 22 359999999988854 34588887776443
No 472
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=29.58 E-value=15 Score=37.61 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=29.4
Q ss_pred CccCCCCcccccCceec----cCc--ccccHHHHHHHHHhCCCCCCCccc
Q 006877 249 DFRCPISLELMKDPVIV----STG--QTYERSCIQKWLDAGHKTCPKTQQ 292 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~----~cg--~t~~r~ci~~~~~~~~~~CP~~~~ 292 (627)
.-.||+|+....--++. .-| +-+|.-|-..|-- ....||.|+.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 45899999865433332 234 4568888888876 4567999986
No 473
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=29.52 E-value=24 Score=35.37 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=27.9
Q ss_pred CccCCCCccccc-CceeccCcccccHHHHHHHHHhCCCCCCCccccc
Q 006877 249 DFRCPISLELMK-DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTL 294 (627)
Q Consensus 249 ~f~Cpic~~~m~-dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l 294 (627)
--.|--|.-... --..++|.|.||-.|-.. ...+.||.|..++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc---CccccCcCcccHH
Confidence 345666654322 122479999999999532 2457899997655
No 474
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=29.30 E-value=1.8e+02 Score=23.29 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHhhhhhhHHhhhhcCCCCChHHHHhHHHHHHHHHHHHHHHHhc-CCCch
Q 006877 31 FKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKST-NDGSK 89 (627)
Q Consensus 31 ~~~~~~~l~~~~~ll~~~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c-~~~Sk 89 (627)
.+++=..|+.++..+.|+++.+...+ .+++........-.-.-++|+.|+... +.|.+
T Consensus 3 v~~~r~~Li~~v~~v~~ilD~L~~~~-Vit~e~~~~I~a~~T~~~kar~Lld~l~~kG~~ 61 (82)
T cd08330 3 VDQHREALIARVTNVDPILDKLHGKK-VITQEQYSEVRAEKTNQEKMRKLFSFVRSWGAS 61 (82)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHCC-CCCHHHHHHHHcCCCcHHHHHHHHHHHHccCHH
Confidence 46677789999999999999998655 445555555555455568888888886 44433
No 475
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.93 E-value=1.3e+02 Score=32.83 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=47.6
Q ss_pred HhcCCCHHHHHHHHHHHHhhccCCcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 006877 392 LLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSV 454 (627)
Q Consensus 392 lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~ 454 (627)
+..+.++++++.|..++.+++.+.++|.... .+..-..+++.+-...+++-+.++.++..+-.
T Consensus 336 ~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 336 LCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3445799999999999999999988877554 45556677888877777777777777766543
No 476
>PLN03205 ATR interacting protein; Provisional
Probab=28.23 E-value=1.8e+02 Score=30.69 Aligned_cols=111 Identities=18% Similarity=0.179 Sum_probs=69.8
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcC----hhhHHHHhhCCChHHHHHHHh-----cCCHHHHHHHHHHHHHHhcCC
Q 006877 509 VPPLMRFLKDAGGGMVDEALAILAILASH----QEGKTAIGQAEPIPVLMEVIR-----TGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 509 v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~----~~~~~~i~~~g~v~~Lv~lL~-----~~~~~~~~~A~~~L~~L~~~~ 579 (627)
+.+|+.+-.-++..++..++.+|..+-.| ...-.+-.+.+.+ .|++++. +....++-.|+.++.-+....
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 34455555556777777777777655543 2212222334433 3444443 234568888998887665544
Q ss_pred HH--HHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHHHHhH
Q 006877 580 AE--QLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQRI 620 (627)
Q Consensus 580 ~~--~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~l~~~ 620 (627)
.. .+..+.+.-++.++-.+++.. .-.+++.|..+|.+|-.+
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC 447 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC 447 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC
Confidence 33 445566667888888888775 688999999999887543
No 477
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.01 E-value=1.3e+02 Score=25.91 Aligned_cols=40 Identities=23% Similarity=0.104 Sum_probs=34.0
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh
Q 006877 507 GIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ 546 (627)
Q Consensus 507 g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~ 546 (627)
-+|+.|+.-|.+++++++..|+.+|...|..+.....++.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 3688999999999999999999999999998866666554
No 478
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=27.79 E-value=6.9e+02 Score=29.16 Aligned_cols=152 Identities=16% Similarity=0.094 Sum_probs=92.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhccCC--cchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hhH
Q 006877 385 AIPLLVELLSSTDPRTQEHAVTALLNLSIND--SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKV 460 (627)
Q Consensus 385 ~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~--~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~--~~~ 460 (627)
....+...+.++++..-...+.++.++..-+ ..+. ...-+++-..-....-..+......+|..++..+. -..
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3445566667778888888888888876432 1111 11122222222223234566777888888887753 334
Q ss_pred HhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH----HHHHcCC-------hHHHHHhhcc----CChhhHH
Q 006877 461 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA----RAVRAGI-------VPPLMRFLKD----AGGGMVD 525 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~----~l~~~g~-------v~~Lv~lL~~----~~~~~~~ 525 (627)
.+.+.++..+++.++-+++.++...|...|..... .++|. .+.+... ...|-++... +-+.++.
T Consensus 519 l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr 597 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVR 597 (727)
T ss_pred HHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHH
Confidence 44445899999999999999999999999999885 45554 2333322 2222222221 3455666
Q ss_pred HHHHHHHHHhcChhh
Q 006877 526 EALAILAILASHQEG 540 (627)
Q Consensus 526 ~Al~~L~~L~~~~~~ 540 (627)
....+|..||....|
T Consensus 598 ~~~DIi~~Lcdp~~G 612 (727)
T PF12726_consen 598 CLMDIIEVLCDPVSG 612 (727)
T ss_pred HHHHHHHHHcCCCCC
Confidence 677777777775444
No 479
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=27.49 E-value=59 Score=27.54 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=20.5
Q ss_pred cccccHHHHHHHHHh--------CCCCCCCcccc
Q 006877 268 GQTYERSCIQKWLDA--------GHKTCPKTQQT 293 (627)
Q Consensus 268 g~t~~r~ci~~~~~~--------~~~~CP~~~~~ 293 (627)
.-.||..|+..++.+ ++..||.|+..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 556999999988863 45789999863
No 480
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=27.44 E-value=3.5e+02 Score=34.25 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=69.3
Q ss_pred cCCHHHHHH----HhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh
Q 006877 383 AGAIPLLVE----LLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN 458 (627)
Q Consensus 383 ~g~i~~Lv~----lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~ 458 (627)
.+..+.++. +|++.++.++.-+......+-..-+ ......++..|+..+.+|+......|..+|..|+.. +
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~--~ 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK--N 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--c
Confidence 355566554 4577888888877776666543321 122334678888888888766667899999999853 3
Q ss_pred hHHhhh-hCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 459 KVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 459 ~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
...+.. +..|..+++.+.+=+..-.+.....|+.|+...
T Consensus 505 ~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 505 PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 334443 356677777777666666666788888887644
No 481
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.30 E-value=1.1e+03 Score=29.94 Aligned_cols=221 Identities=14% Similarity=0.035 Sum_probs=112.4
Q ss_pred hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcch-HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhc
Q 006877 375 DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLS 453 (627)
Q Consensus 375 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k-~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls 453 (627)
..|..+++.|....++.-+++.|+.++..|.+++...-.+-++. +...+.-.+..++.+.+++..+
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e------------- 1496 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRE------------- 1496 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcC-------------
Confidence 44557888999999999999999999999988776554333332 2222222233333333332100
Q ss_pred CCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChh---hHHHHHHH
Q 006877 454 VIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGG---MVDEALAI 530 (627)
Q Consensus 454 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~---~~~~Al~~ 530 (627)
++.+....-+-++.....++-.++.......-..|.- ...++-.++|.+-+++.+...+ .++-.+..
T Consensus 1497 --~~~Rl~si~alF~A~~~~ill~Ps~~ly~~In~~L~~--------s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~L 1566 (1758)
T KOG1791|consen 1497 --SDPRLISICALFIAFFSDILLVPSEGLYFPINGLLLS--------SKIVDLQGIPIFHRFFYSSVFEHHTEREWVLEL 1566 (1758)
T ss_pred --CCcchhhHHHHHHHHHHHHHcCCccccchhHHHHHHh--------hhhcccCCCccHHHHHHhccccccchhhhhHHH
Confidence 0000000000011111122222211111111111110 2445566778888887663322 33334555
Q ss_pred HHHHhcChhhHHHHhhCCChHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC--ChHH
Q 006877 531 LAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRA 606 (627)
Q Consensus 531 L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~--~~~~ 606 (627)
+..........+.....+....++.+..+. +...+..-..+|.+-..-.......+-..|....+..++.++ .+..
T Consensus 1567 V~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~ 1646 (1758)
T KOG1791|consen 1567 VSKGLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVL 1646 (1758)
T ss_pred HHHHhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHH
Confidence 555555566666666667777777777543 233333444444443333334455556679999999999988 3444
Q ss_pred HHH-HHHHHHHHH
Q 006877 607 KRK-AGSILELLQ 618 (627)
Q Consensus 607 k~~-A~~lL~~l~ 618 (627)
.+. -..++..+.
T Consensus 1647 ~~~l~~~v~~~l~ 1659 (1758)
T KOG1791|consen 1647 LKALVISVLKVLW 1659 (1758)
T ss_pred HhhhHHHHHHHHH
Confidence 444 345555554
No 482
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=26.95 E-value=1.3e+02 Score=24.93 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=46.9
Q ss_pred CchhhhhhhHHHHHHHHhhhhhhHHhhhhcCCCCChHHHHhHHHHHHHHHHHHHHHHhc-CCCchh
Q 006877 26 ECKNFFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKST-NDGSKL 90 (627)
Q Consensus 26 ~~~~~~~~~~~~l~~~~~ll~~~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c-~~~Skl 90 (627)
....+.|++=..|++++.-..|+++.+...+ .++..-...+..-...-++|+.|+..- .+|++-
T Consensus 6 ~~~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~-Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~A 70 (94)
T cd08329 6 DDLSLIRKNRMALFQHLTSVLPILDSLLSAN-VITEQEYDVIKQKTQTPLQARELIDTVLVKGNAA 70 (94)
T ss_pred HHHHHHHHhHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHcCCChHHHHHHHHHHHHhhhHHH
Confidence 4456789999999999987999999998766 345554555555455568999999884 555443
No 483
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=26.79 E-value=21 Score=36.48 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=30.5
Q ss_pred CCccCCCCcccccCceec---cCc--ccccHHHHHHHHHhCCCCCCCccc
Q 006877 248 DDFRCPISLELMKDPVIV---STG--QTYERSCIQKWLDAGHKTCPKTQQ 292 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~---~cg--~t~~r~ci~~~~~~~~~~CP~~~~ 292 (627)
..-.||+|+....--|+. .-| +-+|.-|-..|-- ....||.|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 457899999875433331 334 3468888888876 4567999985
No 484
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=26.63 E-value=52 Score=27.53 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
..+|..|.||-|++. .-||-+ + + ..++..||.|+....
T Consensus 16 ~klpt~f~CP~Cge~-~v~v~~--~----k-------~~~h~~C~~CG~y~~ 53 (99)
T PRK14892 16 PKLPKIFECPRCGKV-SISVKI--K----K-------NIAIITCGNCGLYTE 53 (99)
T ss_pred cCCCcEeECCCCCCe-Eeeeec--C----C-------CcceEECCCCCCccC
Confidence 456789999999952 322222 1 1 137788999987654
No 485
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.56 E-value=33 Score=32.99 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=26.5
Q ss_pred CCCCcccccCceeccCcc-cccHHHHHHHHHhCCCCCCCccccc
Q 006877 252 CPISLELMKDPVIVSTGQ-TYERSCIQKWLDAGHKTCPKTQQTL 294 (627)
Q Consensus 252 Cpic~~~m~dPv~~~cg~-t~~r~ci~~~~~~~~~~CP~~~~~l 294 (627)
|-.|.+-=..=+.+||.| .+|..|= .+-.+||.|+.+.
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~-----~~~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICD-----ESLRICPICRSPK 199 (207)
T ss_pred ceecCcCCceEEeecccceEeccccc-----ccCccCCCCcChh
Confidence 888887665544569997 5777772 2356799998643
No 486
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.49 E-value=3.6e+02 Score=23.47 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhccCC--cchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc---------hh-hHH----hh
Q 006877 400 TQEHAVTALLNLSIND--SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID---------EN-KVA----IG 463 (627)
Q Consensus 400 ~~~~A~~~L~nLs~~~--~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~---------~~-~~~----i~ 463 (627)
++...+.++..++..+ .. -.+.++.++..+.+ ++........+|..+...- .. +.. +.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 4455556666665421 11 13456777777666 3444555555555442110 11 111 22
Q ss_pred hh--CcHHHHHHHhccCC----HHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHH
Q 006877 464 AA--GAIPALIRLLCDGT----PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAIL 531 (627)
Q Consensus 464 ~~--g~i~~Lv~lL~~~~----~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L 531 (627)
.. ..+..+.+.+.... ......++.++..... --.-..+...+.++.+.++|. ++...+.|+.+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~-~~~~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS-WIPIELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT-TS-HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH-hCCHHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 22 34445555554432 6778888888888776 334456667789999999995 445577777765
No 487
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=26.07 E-value=4e+02 Score=27.59 Aligned_cols=228 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHH
Q 006877 356 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL 434 (627)
Q Consensus 356 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL 434 (627)
++.+.-.+..|..+...+ ....++..|+.++..+ ++.....++.++..=...- ..-.....+..+.+-+
T Consensus 1 ad~r~~~~~~L~~l~~~~-------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl 70 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPSSS-------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGL 70 (339)
T ss_pred CcHHHHHHHHHHhCCCcc-------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHh
Q ss_pred ccCCHHHHHHHHHHHHHhcCCchhhHHhhhh-CcHHHHHHHhccCCHHHHHH-----HHHHHHHhc--------------
Q 006877 435 KNGSMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDGTPRGKKD-----AATAIFNLS-------------- 494 (627)
Q Consensus 435 ~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~-----a~~aL~nL~-------------- 494 (627)
++..+.+|..-...+........+...+... ..++.|++.++......... ...+..-++
T Consensus 71 ~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 150 (339)
T PF12074_consen 71 KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNI 150 (339)
T ss_pred cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhh
Q ss_pred -----cCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh-CCChHHHHHHHhcC--CHHHHH
Q 006877 495 -----IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ-AEPIPVLMEVIRTG--SPRNRE 566 (627)
Q Consensus 495 -----~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~-~g~v~~Lv~lL~~~--~~~~~~ 566 (627)
..++....+....+...+ .+.+-..-.+.++..+......+..-.. ...-..++.++-+. +..+|.
T Consensus 151 ~~~~l~~~~kps~ll~~kvyskl------~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~ 224 (339)
T PF12074_consen 151 SFWSLALDPKPSFLLSEKVYSKL------ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRR 224 (339)
T ss_pred hhhhhccCCCcchhcCHHHHhcc------CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCC
Q 006877 567 NAAAVLWAICTGDAEQLKIARELDAEEALKELSESGT 603 (627)
Q Consensus 567 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~ 603 (627)
.|..+|..+...++.. ....++..+...+....
T Consensus 225 ~A~~~l~~l~~~~~~~----l~~~li~~l~~~l~~~~ 257 (339)
T PF12074_consen 225 AALSALKKLYASNPEL----LSKSLISGLWKWLSSSE 257 (339)
T ss_pred HHHHHHHHHHHhChHH----HHHHHHHHHHHHHHhcc
No 488
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.74 E-value=9.8e+02 Score=26.84 Aligned_cols=53 Identities=26% Similarity=0.258 Sum_probs=37.8
Q ss_pred hhhhhHHHHHHHHhhhhhhHHhhhhcCCCCChHHHHhHHHHHHHHHHHHHHHHhc
Q 006877 30 FFKKMHGNLVRRIKLLSPLFEELRDGNEGLSQEEIKGFELLRDALDSSVELLKST 84 (627)
Q Consensus 30 ~~~~~~~~l~~~~~ll~~~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c 84 (627)
-++++-++..+++.+|.--++||-..+ +.+.-...|.+-+.-|..+..|.+.|
T Consensus 175 ~~~~~~~e~~~~~d~L~fq~~Ele~~~--l~~gE~e~L~~e~~rLsn~ekl~~~~ 227 (557)
T COG0497 175 DLQEKERERAQRADLLQFQLEELEELN--LQPGEDEELEEERKRLSNSEKLAEAI 227 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHhhHHHHHHHH
Confidence 456666778999999999999997654 23334566666677777777666666
No 489
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.70 E-value=2.6e+02 Score=34.44 Aligned_cols=173 Identities=11% Similarity=0.089 Sum_probs=83.6
Q ss_pred cCChHHHHHHHc--cCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc----cC---CHHHHHHHHHHHHHhc
Q 006877 424 AGAIPDIVDVLK--NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC----DG---TPRGKKDAATAIFNLS 494 (627)
Q Consensus 424 ~g~i~~Lv~lL~--~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~---~~~~~~~a~~aL~nL~ 494 (627)
.|.+-+...+.. ..-.+++.....+|.++-....- .+.. | .+...++++ .+ ..+....+...|.-++
T Consensus 839 ~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge--~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIs 914 (1610)
T KOG1848|consen 839 LGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGE--HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLIS 914 (1610)
T ss_pred hHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccch--hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhh
Confidence 344444444433 33456777777777776543321 1111 1 333444443 22 2233333344444443
Q ss_pred cCC-CchHHHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhh-HHHHhhCCChHHHHHHHhc--CCHHHHHHHH
Q 006877 495 IYQ-GNKARAVRAGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEG-KTAIGQAEPIPVLMEVIRT--GSPRNRENAA 569 (627)
Q Consensus 495 ~~~-~~~~~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~-~~~i~~~g~v~~Lv~lL~~--~~~~~~~~A~ 569 (627)
.+- ..-..=.-.++|..++.+-.. ++..+--.|++.+|+++..-.. +....+.+.-...++-+.+ .+..+--+++
T Consensus 915 sDfLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~l 994 (1610)
T KOG1848|consen 915 SDFLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVL 994 (1610)
T ss_pred hcchhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHH
Confidence 321 011111224556666666643 6777888899999999875433 2223333333444444443 2233444454
Q ss_pred HHHH-----HHhcCCHHHHHHHHHcCcHHHHHHhhhcCCh
Q 006877 570 AVLW-----AICTGDAEQLKIARELDAEEALKELSESGTD 604 (627)
Q Consensus 570 ~~L~-----~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~ 604 (627)
+++. ++|.++ ..-++.|+++.|.+++.+...
T Consensus 995 wi~ll~~L~~~~~ds----r~eVRngAvqtlfri~~Shg~ 1030 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDS----RAEVRNGAVQTLFRIFNSHGS 1030 (1610)
T ss_pred HHHHHHHHHHHhccc----hHHHhhhHHHHHHHHHhhhcc
Confidence 4433 233332 223455777777777766543
No 490
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=25.53 E-value=64 Score=23.88 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=14.3
Q ss_pred CCCCCCCccccccCCCCCcc
Q 006877 283 GHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 283 ~~~~CP~~~~~l~~~~l~~n 302 (627)
.+++||+|+..++.....-.
T Consensus 7 PH~HC~VCg~aIp~de~~CS 26 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQVCS 26 (64)
T ss_pred CCccccccCCcCCCccchHH
Confidence 46789999988877655433
No 491
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.26 E-value=5.7e+02 Score=24.37 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCC--CchhhhhhhHHHHHHHHhhhhhhHHhhhhcCCCC-----ChHHHHhHHHHHHHHHHHHHHHHhc
Q 006877 12 SRLVASVKEVSGLP--ECKNFFKKMHGNLVRRIKLLSPLFEELRDGNEGL-----SQEEIKGFELLRDALDSSVELLKST 84 (627)
Q Consensus 12 ~~l~~~~~~i~~~~--~~~~~~~~~~~~l~~~~~ll~~~leel~~~~~~~-----~~~~~~~l~~L~~~l~~ak~Ll~~c 84 (627)
.+++.++.+|+... --+.+||+.+.+.-++++...-.+++|+..-.+. +..+..++++...|.---..+-..|
T Consensus 20 EE~l~lsRei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~ 99 (204)
T COG2178 20 EEALKLSREIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR 99 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC
Confidence 35667777776544 2336799999888888888888888887432222 2356677888777765444444446
Q ss_pred CCCchhHHHHhhHHHHHHHHHHHHHHHH-HhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 006877 85 NDGSKLYQCLQRDKIAAQFHQLTEQIEA-ALSDIPYDKLDLSEEVREQIELVHVQFR 140 (627)
Q Consensus 85 ~~~Skl~ll~~~~~~~~~~~~~~~~l~~-~L~~~p~~~~~~s~~~~e~i~~~~~~~~ 140 (627)
-.++.= +=+.....+.-+-+++.+|.+ +|..+.-.+++--.....-++.+...++
T Consensus 100 ~ps~~E-L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm 155 (204)
T COG2178 100 LPSPEE-LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELM 155 (204)
T ss_pred CCCHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 555551 222223344555555556555 3333333333333333333444444443
No 492
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=25.22 E-value=2e+02 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=16.6
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHh
Q 006877 509 VPPLMRFLKDAGGGMVDEALAILAILA 535 (627)
Q Consensus 509 v~~Lv~lL~~~~~~~~~~Al~~L~~L~ 535 (627)
|.+|+++|.+.+..+...|..+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 777888887777777777777776543
No 493
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.15 E-value=2.6e+02 Score=25.45 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=49.2
Q ss_pred cccccHHHHHHHHHhCCCCCCCccccccCCCCCccHH-H--HhhhHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccHhHH
Q 006877 268 GQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYV-L--KSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAI 344 (627)
Q Consensus 268 g~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~-l--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (627)
.+.||..|=.+-+. .||.|..++.-....+... + ..-.-.+|.+=|.+.|=. ...-...
T Consensus 27 ~~~fC~kCG~~tI~----~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt--------------~~~L~aa 88 (158)
T PF10083_consen 27 REKFCSKCGAKTIT----SCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWT--------------ENALEAA 88 (158)
T ss_pred HHHHHHHhhHHHHH----HCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchH--------------HHHHHHH
Confidence 35688888776665 5999988775332211100 0 001234555544443322 2223344
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChhh
Q 006877 345 DALLGKLANGNVEEQRAAAGELRLLAKRNADN 376 (627)
Q Consensus 345 ~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~ 376 (627)
..|++.+..-++++++.--..|..|..+++..
T Consensus 89 ~el~ee~eeLs~deke~~~~sl~dL~~d~PkT 120 (158)
T PF10083_consen 89 NELIEEDEELSPDEKEQFKESLPDLTKDTPKT 120 (158)
T ss_pred HHHHHHhhcCCHHHHHHHHhhhHHHhhcCCcc
Confidence 55556555566677766666777777665543
No 494
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=24.79 E-value=46 Score=30.68 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=8.2
Q ss_pred CccCCCCccccc
Q 006877 249 DFRCPISLELMK 260 (627)
Q Consensus 249 ~f~Cpic~~~m~ 260 (627)
.+.||+|+-+..
T Consensus 134 ~~vC~vCGy~~~ 145 (166)
T COG1592 134 VWVCPVCGYTHE 145 (166)
T ss_pred EEEcCCCCCccc
Confidence 678998855443
No 495
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=24.46 E-value=25 Score=36.73 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=0.0
Q ss_pred CCccCCCCcccc--------------cC---ce--eccCcccccHHHHHHHHHh-----C----CCCCCCcccccc
Q 006877 248 DDFRCPISLELM--------------KD---PV--IVSTGQTYERSCIQKWLDA-----G----HKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m--------------~d---Pv--~~~cg~t~~r~ci~~~~~~-----~----~~~CP~~~~~l~ 295 (627)
..-.||+|...- .| |. ..||||. |..-.-+||.. | +..||.|..++.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv-~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHV-CSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccc-cchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 367899997521 12 22 3489997 44444455542 2 257999988775
No 496
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.42 E-value=1.2e+03 Score=27.50 Aligned_cols=174 Identities=15% Similarity=0.251 Sum_probs=85.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhcc-CCcchHHHhhcCChHHHH-HHH-------ccCCHHHHHHHH-HHHHHhc
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIV-DVL-------KNGSMEARENAA-ATLFSLS 453 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv-~lL-------~~~~~e~~~~aa-~~L~~Ls 453 (627)
..+|.++++|.++...+-..|+.++-.+-. .+.+...|..++.+.+.+ .++ +.+...--+... +++..++
T Consensus 498 ~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~ 577 (960)
T KOG1992|consen 498 ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIIS 577 (960)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHH
Confidence 468999999999888888888888877644 333445555444444322 222 222111111111 2222333
Q ss_pred CCchhh-HHhhhhCcHHHHHHHh----ccC-CHHHHH---HHHHHHHHhcc-CCCchHHHHHcCChHHHHHhhccCChhh
Q 006877 454 VIDENK-VAIGAAGAIPALIRLL----CDG-TPRGKK---DAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGM 523 (627)
Q Consensus 454 ~~~~~~-~~i~~~g~i~~Lv~lL----~~~-~~~~~~---~a~~aL~nL~~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~~ 523 (627)
..++.. .... ..+..|.+++ +++ ++..-. .+..++.+.+. .+..-....+...+|.+-..|...-.+.
T Consensus 578 i~~~~i~p~~~--~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~Ef 655 (960)
T KOG1992|consen 578 ILQSAIIPHAP--ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEF 655 (960)
T ss_pred hCHHhhhhhhh--HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221 1111 1222233332 333 333332 33344333333 2222223344556666666676544455
Q ss_pred HHHHHHHHHHHhcChhh--------------HHHHhh-CCChHHHHHHHhc
Q 006877 524 VDEALAILAILASHQEG--------------KTAIGQ-AEPIPVLMEVIRT 559 (627)
Q Consensus 524 ~~~Al~~L~~L~~~~~~--------------~~~i~~-~g~v~~Lv~lL~~ 559 (627)
.-+++.+++.|..+..+ ...+.+ .|-+|.++.+|+.
T Consensus 656 iPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 656 IPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHH
Confidence 56777777777664333 112333 4778888888863
No 497
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=24.27 E-value=4.6e+02 Score=33.25 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=66.8
Q ss_pred cCChHHHHHH----HccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc
Q 006877 424 AGAIPDIVDV----LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 424 ~g~i~~Lv~l----L~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 499 (627)
.+.++.++.+ |++..+.++..+......+-..-+ ...+..++..|+..+.+|+..-...|+.+|..|+.. +
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~--~ 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK--N 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--c
Confidence 3566666655 456778888777766555532221 122345788899999888877778999999999963 2
Q ss_pred hHHHHH-cCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 006877 500 KARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILASH 537 (627)
Q Consensus 500 ~~~l~~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~ 537 (627)
...+.. +..+..+++.+.+=+..=......+|..|+..
T Consensus 505 ~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~ 543 (1426)
T PF14631_consen 505 PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFS 543 (1426)
T ss_dssp HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 233332 33455566666554444456778888888764
No 498
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=24.20 E-value=6e+02 Score=23.86 Aligned_cols=136 Identities=20% Similarity=0.206 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhccCCcc------hHHHh-h-----cCChHHH-HHHHccCCHHHHHHHHHHHHHhcCCchh--------
Q 006877 400 TQEHAVTALLNLSINDSN------KGTIV-N-----AGAIPDI-VDVLKNGSMEARENAAATLFSLSVIDEN-------- 458 (627)
Q Consensus 400 ~~~~A~~~L~nLs~~~~~------k~~i~-~-----~g~i~~L-v~lL~~~~~e~~~~aa~~L~~Ls~~~~~-------- 458 (627)
+|..|+.+|..++..-+. ...+. + ...-+.| .-++.++++.+|..|+.+|..|-.....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777654222 22222 1 1233334 4445677899999999998877332210
Q ss_pred h----------HHhhhh--CcHHHHHHHhccC-CHHHHHHHHHHHHHhccCCC-chHHHHHcCC----hHHHHHhhccCC
Q 006877 459 K----------VAIGAA--GAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQG-NKARAVRAGI----VPPLMRFLKDAG 520 (627)
Q Consensus 459 ~----------~~i~~~--g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~----v~~Lv~lL~~~~ 520 (627)
+ ..++.. ..-..|+..|..+ +.......+++|..|..... +|- ..|. +..+..++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 0 111111 2334555566554 56777788888888877544 332 2344 444555666788
Q ss_pred hhhHHHHHHHHHHHhcCh
Q 006877 521 GGMVDEALAILAILASHQ 538 (627)
Q Consensus 521 ~~~~~~Al~~L~~L~~~~ 538 (627)
..++..++.++..+....
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 889999999998887643
No 499
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=24.02 E-value=3.8e+02 Score=23.37 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=46.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-hhHHHHHhc-CCHHHHHHHhcCCC--------HHHHHHHHHHHHh
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEA-GAIPLLVELLSSTD--------PRTQEHAVTALLN 410 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~-g~i~~Lv~lL~~~~--------~~~~~~A~~~L~n 410 (627)
...+..|.+.|+..++.++.++++.|..++.... ..+.++... ..|..+..+=...| ..+|..|-.++..
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 3578889999998889999999999999986544 445555554 34555554443222 3455555554443
Q ss_pred h
Q 006877 411 L 411 (627)
Q Consensus 411 L 411 (627)
|
T Consensus 117 i 117 (122)
T cd03572 117 I 117 (122)
T ss_pred H
Confidence 3
No 500
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=23.99 E-value=59 Score=37.46 Aligned_cols=45 Identities=31% Similarity=0.631 Sum_probs=35.4
Q ss_pred CCccCCCCccccc--Ccee--ccCcccccHHHHHHHHHh------CCCCCCCccc
Q 006877 248 DDFRCPISLELMK--DPVI--VSTGQTYERSCIQKWLDA------GHKTCPKTQQ 292 (627)
Q Consensus 248 ~~f~Cpic~~~m~--dPv~--~~cg~t~~r~ci~~~~~~------~~~~CP~~~~ 292 (627)
+.+.|-||.+.+. +||- ..|-|.|.-.||.+|-.. ....||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4678999999884 6664 357899999999999864 3467999983
Done!