Query 006877
Match_columns 627
No_of_seqs 474 out of 2757
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 11:19:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 5.4E-31 1.8E-35 274.6 23.6 263 357-620 47-335 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 1.8E-30 6.3E-35 281.9 22.8 279 343-622 3-363 (457)
3 3nmz_A APC variant protein; pr 100.0 8.7E-30 3E-34 273.2 23.2 261 359-620 165-451 (458)
4 3l6x_A Catenin delta-1; cateni 100.0 1.7E-29 5.9E-34 276.8 25.9 280 341-621 47-386 (584)
5 1xm9_A Plakophilin 1; armadill 100.0 3.6E-29 1.2E-33 271.7 26.0 285 338-624 40-454 (457)
6 3now_A UNC-45 protein, SD10334 100.0 1.7E-28 5.8E-33 277.5 27.1 280 340-619 419-737 (810)
7 3ul1_B Importin subunit alpha- 100.0 6.9E-28 2.4E-32 265.5 28.3 282 338-619 96-387 (510)
8 3nmw_A APC variant protein; AR 100.0 8.2E-29 2.8E-33 258.1 19.6 246 337-582 68-339 (354)
9 3tpo_A Importin subunit alpha- 100.0 1.9E-27 6.5E-32 263.3 30.4 282 338-619 115-406 (529)
10 3l6x_A Catenin delta-1; cateni 100.0 9.4E-28 3.2E-32 263.0 26.5 285 338-624 86-481 (584)
11 3nmz_A APC variant protein; pr 100.0 4.8E-28 1.6E-32 259.7 23.5 281 338-618 66-407 (458)
12 3now_A UNC-45 protein, SD10334 100.0 1.8E-27 6.1E-32 269.2 27.2 284 339-623 492-786 (810)
13 4b8j_A Importin subunit alpha- 99.9 5.5E-26 1.9E-30 251.5 31.3 282 339-620 114-401 (528)
14 3tpo_A Importin subunit alpha- 99.9 8.8E-26 3E-30 249.9 30.1 284 338-621 158-451 (529)
15 3ul1_B Importin subunit alpha- 99.9 1.3E-25 4.4E-30 247.3 28.5 283 338-620 139-431 (510)
16 4b8j_A Importin subunit alpha- 99.9 3.5E-25 1.2E-29 245.1 30.8 278 342-619 74-358 (528)
17 4hxt_A De novo protein OR329; 99.9 1.4E-25 4.6E-30 222.8 24.7 239 342-580 2-244 (252)
18 4hxt_A De novo protein OR329; 99.9 1.7E-25 5.9E-30 222.1 25.3 238 384-621 2-243 (252)
19 1wa5_B Importin alpha subunit; 99.9 5.3E-25 1.8E-29 243.8 30.7 282 339-620 127-413 (530)
20 4db8_A Armadillo-repeat protei 99.9 1E-25 3.4E-30 224.4 20.8 236 342-577 12-251 (252)
21 2jdq_A Importin alpha-1 subuni 99.9 4E-24 1.4E-28 231.1 32.4 277 342-619 64-347 (450)
22 1wa5_B Importin alpha subunit; 99.9 4.4E-24 1.5E-28 236.4 32.1 278 342-619 87-370 (530)
23 4db8_A Armadillo-repeat protei 99.9 5.5E-25 1.9E-29 219.1 22.0 236 384-619 12-251 (252)
24 2jdq_A Importin alpha-1 subuni 99.9 8.5E-24 2.9E-28 228.5 32.7 280 341-621 106-392 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 3.2E-23 1.1E-27 228.9 25.3 276 341-619 58-339 (529)
26 2z6h_A Catenin beta-1, beta-ca 99.9 9.3E-23 3.2E-27 231.1 26.1 276 341-619 55-336 (644)
27 1jdh_A Beta-catenin; beta-cate 99.9 9.5E-23 3.3E-27 225.1 25.3 278 340-619 99-385 (529)
28 3tt9_A Plakophilin-2; cell adh 99.9 1.9E-23 6.6E-28 203.2 16.1 195 342-537 8-230 (233)
29 2z6h_A Catenin beta-1, beta-ca 99.9 9.8E-23 3.4E-27 230.9 21.4 276 340-619 12-292 (644)
30 3tt9_A Plakophilin-2; cell adh 99.9 7.6E-23 2.6E-27 199.0 15.4 193 385-578 9-230 (233)
31 3opb_A SWI5-dependent HO expre 99.9 2.8E-22 9.6E-27 222.5 21.2 280 340-619 374-728 (778)
32 2z6g_A B-catenin; FULL-length, 99.9 1.5E-21 5.2E-26 225.2 26.0 276 341-619 191-472 (780)
33 4db6_A Armadillo repeat protei 99.9 1.1E-21 3.8E-26 189.5 20.9 197 341-537 11-210 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 1.5E-21 5.2E-26 225.2 23.8 277 339-619 357-663 (780)
35 4db6_A Armadillo repeat protei 99.9 3.5E-21 1.2E-25 185.9 22.4 197 423-619 10-209 (210)
36 3opb_A SWI5-dependent HO expre 99.8 1.5E-19 5.3E-24 200.6 23.0 277 341-619 333-683 (778)
37 1xqr_A HSPBP1 protein; armadil 99.8 3.8E-19 1.3E-23 180.4 22.6 236 340-576 26-286 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 6E-19 2E-23 178.9 21.9 221 398-618 54-286 (296)
39 2kr4_A Ubiquitin conjugation f 99.8 7.8E-20 2.7E-24 148.9 6.2 76 242-318 7-82 (85)
40 2kre_A Ubiquitin conjugation f 99.8 1.3E-19 4.5E-24 151.9 7.3 76 242-318 22-97 (100)
41 2f42_A STIP1 homology and U-bo 99.8 1.1E-19 3.8E-24 167.2 7.4 76 244-319 101-176 (179)
42 1wgm_A Ubiquitin conjugation f 99.8 2.5E-19 8.7E-24 149.6 7.8 78 241-319 14-92 (98)
43 2c2l_A CHIP, carboxy terminus 99.8 1.5E-18 5.1E-23 175.8 10.1 77 243-319 202-278 (281)
44 1t1h_A Gspef-atpub14, armadill 99.7 2.1E-18 7.3E-23 138.6 6.5 74 245-318 4-77 (78)
45 2yu4_A E3 SUMO-protein ligase 99.7 6.9E-17 2.4E-21 134.2 6.0 73 246-318 4-85 (94)
46 3ztg_A E3 ubiquitin-protein li 99.6 4.5E-15 1.5E-19 123.1 8.2 76 243-318 7-85 (92)
47 3grl_A General vesicular trans 99.6 3.6E-13 1.2E-17 146.1 23.9 276 340-619 19-342 (651)
48 3htk_C E3 SUMO-protein ligase 99.5 1.4E-13 4.9E-18 132.2 12.1 71 245-315 177-251 (267)
49 3grl_A General vesicular trans 99.5 6.6E-12 2.3E-16 136.2 24.6 279 340-618 58-393 (651)
50 3fl2_A E3 ubiquitin-protein li 99.5 4.2E-14 1.4E-18 124.2 5.7 70 246-315 49-119 (124)
51 2bay_A PRE-mRNA splicing facto 99.4 2.5E-14 8.6E-19 107.8 2.3 55 249-304 3-58 (61)
52 1z6u_A NP95-like ring finger p 99.4 8.6E-14 2.9E-18 125.9 4.6 69 246-314 75-144 (150)
53 3m62_A Ubiquitin conjugation f 99.4 1.6E-13 5.5E-18 154.1 6.3 74 244-318 886-960 (968)
54 2ecw_A Tripartite motif-contai 99.4 2.7E-13 9.3E-18 110.5 4.9 69 241-309 11-84 (85)
55 2egp_A Tripartite motif-contai 99.3 8E-14 2.7E-18 112.0 0.2 66 244-309 7-78 (79)
56 2y43_A E3 ubiquitin-protein li 99.3 4.5E-13 1.5E-17 112.6 4.6 70 246-316 19-89 (99)
57 2ecv_A Tripartite motif-contai 99.3 4.6E-13 1.6E-17 109.1 4.5 68 242-309 12-84 (85)
58 3lrq_A E3 ubiquitin-protein li 99.3 4.5E-13 1.5E-17 112.6 4.0 69 246-314 19-88 (100)
59 1oyz_A Hypothetical protein YI 99.3 4.6E-11 1.6E-15 120.2 19.5 226 342-618 23-249 (280)
60 2csy_A Zinc finger protein 183 99.3 9.5E-13 3.3E-17 106.2 5.6 63 245-309 11-73 (81)
61 3hct_A TNF receptor-associated 99.3 7.4E-13 2.5E-17 115.0 5.1 71 242-312 11-81 (118)
62 3ltm_A Alpha-REP4; protein eng 99.3 7.5E-11 2.6E-15 113.3 19.6 191 340-581 17-207 (211)
63 2ecy_A TNF receptor-associated 99.3 1.3E-12 4.5E-17 100.8 5.7 56 243-298 9-64 (66)
64 3l11_A E3 ubiquitin-protein li 99.3 2.5E-13 8.7E-18 117.5 1.7 70 245-314 11-87 (115)
65 3ltm_A Alpha-REP4; protein eng 99.3 8.8E-11 3E-15 112.8 19.6 188 383-621 18-205 (211)
66 2yur_A Retinoblastoma-binding 99.3 2.1E-12 7.3E-17 102.1 6.3 53 243-295 9-63 (74)
67 2ckl_A Polycomb group ring fin 99.3 9.2E-13 3.2E-17 112.6 4.3 69 245-314 11-84 (108)
68 2djb_A Polycomb group ring fin 99.3 3.1E-12 1E-16 100.6 6.2 59 243-302 9-68 (72)
69 3ltj_A Alpharep-4; protein eng 99.3 1.9E-10 6.6E-15 109.5 20.1 187 339-576 11-197 (201)
70 3ltj_A Alpharep-4; protein eng 99.3 2.2E-10 7.6E-15 109.1 19.5 185 384-619 14-198 (201)
71 2ckl_B Ubiquitin ligase protei 99.3 1.7E-12 5.8E-17 119.9 3.8 70 245-314 50-121 (165)
72 4ayc_A E3 ubiquitin-protein li 99.2 2.3E-12 7.8E-17 115.2 3.8 64 248-314 52-115 (138)
73 1jm7_B BARD1, BRCA1-associated 99.2 2E-12 7E-17 112.0 3.0 67 246-315 19-86 (117)
74 2ysl_A Tripartite motif-contai 99.2 7.6E-12 2.6E-16 98.7 6.0 58 242-299 13-72 (73)
75 2ysj_A Tripartite motif-contai 99.2 1.5E-11 5.2E-16 93.8 6.5 49 242-290 13-63 (63)
76 1jm7_A BRCA1, breast cancer ty 99.2 9.4E-12 3.2E-16 107.1 4.6 67 248-314 20-88 (112)
77 1g25_A CDK-activating kinase a 99.2 1.1E-11 3.8E-16 95.2 4.4 55 248-302 2-61 (65)
78 1rmd_A RAG1; V(D)J recombinati 99.2 7.2E-12 2.5E-16 108.5 3.5 68 245-312 19-87 (116)
79 1oyz_A Hypothetical protein YI 99.2 1.4E-09 4.8E-14 109.2 20.9 202 380-619 19-221 (280)
80 3hcs_A TNF receptor-associated 99.2 9.7E-12 3.3E-16 115.5 4.5 71 242-312 11-81 (170)
81 3knv_A TNF receptor-associated 99.2 3.9E-12 1.3E-16 113.7 1.2 68 244-311 26-102 (141)
82 4fdd_A Transportin-1; heat rep 99.1 6.1E-10 2.1E-14 130.0 18.2 274 342-620 128-430 (852)
83 3ng2_A RNF4, snurf, ring finge 99.1 1.9E-11 6.5E-16 95.8 3.3 57 245-302 6-69 (71)
84 4fdd_A Transportin-1; heat rep 99.1 2.8E-10 9.7E-15 132.8 14.2 276 341-620 173-472 (852)
85 2ecj_A Tripartite motif-contai 99.1 5.2E-11 1.8E-15 89.2 4.9 47 244-290 10-58 (58)
86 2ct2_A Tripartite motif protei 99.1 1.1E-10 3.9E-15 95.5 6.9 55 243-297 9-69 (88)
87 2d8t_A Dactylidin, ring finger 99.1 5E-11 1.7E-15 93.3 4.4 51 245-296 11-61 (71)
88 2ea6_A Ring finger protein 4; 99.0 1E-10 3.5E-15 90.9 4.2 52 244-296 10-68 (69)
89 1e4u_A Transcriptional repress 99.0 2.6E-10 9E-15 90.4 5.4 56 244-299 6-65 (78)
90 2xeu_A Ring finger protein 4; 99.0 9.8E-11 3.3E-15 89.6 2.6 54 248-302 2-62 (64)
91 2ect_A Ring finger protein 126 99.0 3.1E-10 1.1E-14 90.5 5.4 57 245-302 11-70 (78)
92 1b3u_A Protein (protein phosph 99.0 2.4E-08 8.2E-13 110.8 20.4 227 342-577 164-392 (588)
93 1ibr_B P95, importin beta-1 su 98.9 4.4E-09 1.5E-13 113.0 13.8 273 342-620 128-438 (462)
94 1b3u_A Protein (protein phosph 98.9 8.8E-09 3E-13 114.3 15.8 263 342-618 324-586 (588)
95 4gmo_A Putative uncharacterize 98.9 1.4E-08 4.8E-13 115.1 15.2 193 425-618 34-257 (684)
96 2vgl_B AP-2 complex subunit be 98.9 6.9E-08 2.4E-12 107.7 20.4 264 341-617 120-417 (591)
97 2ep4_A Ring finger protein 24; 98.9 2.2E-09 7.7E-14 84.5 5.9 53 244-297 10-65 (74)
98 2ecn_A Ring finger protein 141 98.9 7.5E-10 2.6E-14 86.3 3.0 52 245-298 11-62 (70)
99 1chc_A Equine herpes virus-1 r 98.9 1.3E-09 4.4E-14 84.4 4.1 47 248-295 4-51 (68)
100 2ecm_A Ring finger and CHY zin 98.9 1.7E-09 5.7E-14 79.9 4.2 47 248-295 4-54 (55)
101 4gmo_A Putative uncharacterize 98.8 1.2E-08 4E-13 115.7 13.2 192 385-576 35-257 (684)
102 1iym_A EL5; ring-H2 finger, ub 98.8 1.9E-09 6.5E-14 79.6 3.9 49 246-295 2-54 (55)
103 2kiz_A E3 ubiquitin-protein li 98.8 4.6E-09 1.6E-13 81.5 6.1 52 245-297 10-64 (69)
104 2l0b_A E3 ubiquitin-protein li 98.8 2.8E-09 9.5E-14 87.6 4.9 50 246-296 37-89 (91)
105 1bor_A Transcription factor PM 98.8 1.3E-09 4.5E-14 80.7 2.5 47 247-297 4-50 (56)
106 2vgl_B AP-2 complex subunit be 98.8 4.3E-08 1.5E-12 109.4 15.4 258 343-619 50-311 (591)
107 4ap4_A E3 ubiquitin ligase RNF 98.8 1.7E-09 5.7E-14 95.9 2.9 55 247-302 5-66 (133)
108 1x4j_A Ring finger protein 38; 98.8 4.3E-09 1.5E-13 83.2 3.8 50 246-296 20-72 (75)
109 1v87_A Deltex protein 2; ring- 98.7 1.1E-08 3.8E-13 88.0 4.9 49 248-296 24-94 (114)
110 4ic3_A E3 ubiquitin-protein li 98.6 5.5E-09 1.9E-13 82.2 1.3 44 248-296 23-67 (74)
111 2bpt_A Importin beta-1 subunit 98.6 2E-07 7E-12 108.3 14.9 273 342-619 369-668 (861)
112 1qgr_A Protein (importin beta 98.6 1.2E-06 4.2E-11 101.9 21.3 272 343-620 129-438 (876)
113 2y1n_A E3 ubiquitin-protein li 98.6 1.8E-08 6.3E-13 103.4 4.9 49 249-297 332-380 (389)
114 1w63_A Adapter-related protein 98.6 1.5E-06 5E-11 97.4 19.7 256 343-619 71-379 (618)
115 1qgr_A Protein (importin beta 98.6 6.8E-07 2.3E-11 104.1 16.9 273 342-620 172-480 (876)
116 3b2a_A TON_1937, putative unch 98.5 2.8E-06 9.6E-11 79.9 16.4 222 341-572 32-256 (265)
117 4ap4_A E3 ubiquitin ligase RNF 98.5 1.9E-08 6.4E-13 89.0 1.5 55 247-302 70-131 (133)
118 1w63_A Adapter-related protein 98.5 5E-06 1.7E-10 93.1 21.4 251 342-619 142-414 (618)
119 2bpt_A Importin beta-1 subunit 98.5 2.7E-06 9.1E-11 98.9 19.1 273 342-620 134-441 (861)
120 1ibr_B P95, importin beta-1 su 98.5 4.2E-07 1.4E-11 97.4 11.4 267 345-619 93-395 (462)
121 2ecl_A Ring-box protein 2; RNF 98.5 8.9E-08 3E-12 76.6 4.0 48 248-296 14-76 (81)
122 2ecg_A Baculoviral IAP repeat- 98.5 4.4E-08 1.5E-12 77.2 2.1 45 247-296 23-68 (75)
123 2vje_A E3 ubiquitin-protein li 98.4 1.4E-07 4.9E-12 71.6 3.9 47 248-295 7-56 (64)
124 1u6g_C TIP120 protein, CAND1; 98.4 4E-07 1.4E-11 110.4 8.9 271 342-619 6-284 (1230)
125 2vje_B MDM4 protein; proto-onc 98.4 2.1E-07 7.1E-12 70.5 3.7 47 248-295 6-55 (63)
126 1wim_A KIAA0161 protein; ring 98.4 8E-08 2.7E-12 79.4 1.5 46 248-293 4-61 (94)
127 2qk2_A LP04448P; mini spindles 98.3 2.4E-06 8.2E-11 83.6 11.6 184 346-538 19-207 (242)
128 3dpl_R Ring-box protein 1; ubi 98.3 3.7E-07 1.3E-11 76.7 4.8 47 248-295 36-100 (106)
129 2qk2_A LP04448P; mini spindles 98.3 4.7E-06 1.6E-10 81.4 12.5 184 428-619 18-205 (242)
130 2yho_A E3 ubiquitin-protein li 98.2 2.1E-07 7.1E-12 73.9 0.7 44 248-296 17-61 (79)
131 1u6g_C TIP120 protein, CAND1; 98.2 6.3E-06 2.2E-10 99.9 13.5 231 341-580 47-287 (1230)
132 2vgl_A Adaptor protein complex 98.2 0.0001 3.4E-09 82.4 21.8 254 342-618 146-432 (621)
133 2vgl_A Adaptor protein complex 98.2 0.00021 7.2E-09 79.8 23.7 256 343-621 112-400 (621)
134 2ea5_A Cell growth regulator w 98.2 1.9E-06 6.7E-11 66.1 5.0 45 247-296 13-58 (68)
135 3t6p_A Baculoviral IAP repeat- 98.1 4.2E-07 1.4E-11 92.9 1.3 46 246-296 292-338 (345)
136 3b2a_A TON_1937, putative unch 98.1 4.5E-05 1.5E-09 71.8 14.7 223 384-618 33-260 (265)
137 2d8s_A Cellular modulator of i 98.1 5E-06 1.7E-10 65.9 6.0 52 245-296 11-70 (80)
138 1te4_A Conserved protein MTH18 98.1 6.2E-07 2.1E-11 78.9 0.7 120 383-533 11-130 (131)
139 1ho8_A Vacuolar ATP synthase s 98.1 0.0001 3.5E-09 77.5 17.3 264 352-618 135-475 (480)
140 2qk1_A Protein STU2; STU2P, XM 98.1 1.1E-05 3.8E-10 79.2 9.6 189 347-537 21-221 (249)
141 1te4_A Conserved protein MTH18 98.0 6.7E-07 2.3E-11 78.6 -0.0 120 342-493 12-131 (131)
142 2qk1_A Protein STU2; STU2P, XM 97.9 5.4E-05 1.8E-09 74.3 11.7 190 429-619 20-220 (249)
143 4a0k_B E3 ubiquitin-protein li 97.9 1.4E-06 4.9E-11 74.1 0.3 46 249-295 48-111 (117)
144 1ho8_A Vacuolar ATP synthase s 97.9 0.00014 4.8E-09 76.4 14.9 229 347-577 172-476 (480)
145 3dad_A FH1/FH2 domain-containi 97.8 0.00076 2.6E-08 67.5 17.7 181 429-609 122-326 (339)
146 3dad_A FH1/FH2 domain-containi 97.8 0.00033 1.1E-08 70.1 14.6 148 470-617 122-284 (339)
147 2iw3_A Elongation factor 3A; a 97.6 0.0036 1.2E-07 72.3 22.2 266 341-623 53-328 (986)
148 3tjz_B Coatomer subunit gamma; 97.6 0.00063 2.2E-08 69.7 14.2 263 300-610 79-344 (355)
149 3tjz_B Coatomer subunit gamma; 97.6 0.00094 3.2E-08 68.5 15.3 244 343-618 69-315 (355)
150 2db0_A 253AA long hypothetical 97.6 0.017 5.7E-07 52.3 20.7 212 384-618 32-245 (253)
151 4ady_A RPN2, 26S proteasome re 97.4 0.015 5.2E-07 66.4 23.5 234 343-618 430-675 (963)
152 2db0_A 253AA long hypothetical 97.2 0.12 4.2E-06 46.7 22.0 215 340-577 30-246 (253)
153 2ct0_A Non-SMC element 1 homol 97.2 0.00065 2.2E-08 52.5 6.1 47 249-295 15-63 (74)
154 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00061 2.1E-08 50.4 4.6 48 248-295 5-58 (60)
155 3vk6_A E3 ubiquitin-protein li 97.0 0.00051 1.7E-08 55.3 4.0 46 251-296 3-49 (101)
156 3oc3_A Helicase MOT1, MOT1; re 96.9 0.0048 1.6E-07 65.3 11.3 242 343-615 175-432 (800)
157 4ffb_C Protein STU2; tubulin f 96.7 0.022 7.7E-07 56.3 14.7 186 347-537 14-213 (278)
158 4ady_A RPN2, 26S proteasome re 96.7 0.15 5.1E-06 58.4 22.7 239 342-617 472-717 (963)
159 3k1l_B Fancl; UBC, ring, RWD, 96.5 0.00047 1.6E-08 68.6 0.4 48 248-295 307-372 (381)
160 2fv2_A RCD1 required for cell 96.5 0.17 6E-06 48.3 17.7 227 343-575 4-266 (268)
161 2fv2_A RCD1 required for cell 96.3 0.093 3.2E-06 50.2 14.9 139 480-618 15-173 (268)
162 2iw3_A Elongation factor 3A; a 96.2 0.2 7E-06 57.8 20.2 221 343-575 96-322 (986)
163 1wa5_C Importin alpha RE-expor 95.9 0.24 8.3E-06 58.0 19.6 253 357-619 376-670 (960)
164 1upk_A MO25 protein; transfera 95.9 0.14 4.7E-06 51.2 14.5 196 342-539 78-286 (341)
165 2of3_A ZYG-9; multifunctional 95.9 0.2 6.9E-06 48.8 15.4 180 346-537 50-237 (266)
166 4ffb_C Protein STU2; tubulin f 95.2 0.63 2.2E-05 45.6 16.9 189 386-581 12-216 (278)
167 3ebb_A Phospholipase A2-activa 95.0 0.51 1.7E-05 47.0 15.2 136 479-616 161-303 (304)
168 1wa5_C Importin alpha RE-expor 94.8 0.83 2.8E-05 53.4 19.1 219 353-576 416-669 (960)
169 3ebb_A Phospholipase A2-activa 94.6 0.45 1.5E-05 47.4 13.8 173 343-517 104-286 (304)
170 2jun_A Midline-1; B-BOX, TRIM, 94.5 0.014 4.9E-07 48.0 2.2 34 248-281 2-38 (101)
171 2f31_A Diaphanous protein homo 94.2 1.5 5.2E-05 41.8 16.1 176 347-522 5-214 (233)
172 3eg5_B Protein diaphanous homo 93.6 1.8 6.3E-05 44.5 16.4 175 346-522 70-280 (383)
173 1lrv_A LRV, leucine-rich repea 93.6 0.05 1.7E-06 52.6 4.2 67 512-614 175-241 (244)
174 1upk_A MO25 protein; transfera 93.4 3.6 0.00012 41.0 17.2 155 461-617 73-236 (341)
175 3i2d_A E3 SUMO-protein ligase 93.3 0.066 2.3E-06 54.2 4.7 63 249-311 249-315 (371)
176 2of3_A ZYG-9; multifunctional 93.0 1.2 4E-05 43.3 13.0 177 429-618 50-235 (266)
177 2x1g_F Cadmus; transport prote 93.0 5 0.00017 46.7 21.1 173 437-619 476-663 (971)
178 3nw0_A Non-structural maintena 92.9 0.079 2.7E-06 50.9 4.4 49 249-297 180-230 (238)
179 2bnx_A Diaphanous protein homo 92.3 4.4 0.00015 41.7 17.1 176 347-523 9-219 (386)
180 4fo9_A E3 SUMO-protein ligase 92.2 0.12 4E-06 52.2 4.7 64 248-311 214-281 (360)
181 2x19_B Importin-13; nuclear tr 92.1 2.8 9.6E-05 48.7 17.4 214 352-577 459-714 (963)
182 3u0r_A Apoptosis inhibitor 5; 91.8 3.5 0.00012 43.2 15.2 131 343-492 30-160 (507)
183 2x1g_F Cadmus; transport prote 91.6 5.7 0.0002 46.2 19.2 212 396-619 476-722 (971)
184 2x19_B Importin-13; nuclear tr 89.9 6.3 0.00022 45.7 17.4 174 435-618 459-645 (963)
185 2f31_A Diaphanous protein homo 89.7 3.2 0.00011 39.4 12.2 141 424-565 42-216 (233)
186 3oc3_A Helicase MOT1, MOT1; re 89.7 1.4 4.7E-05 47.1 9.9 186 356-572 242-431 (800)
187 3eg5_B Protein diaphanous homo 88.5 6.6 0.00023 40.3 14.3 135 424-559 108-275 (383)
188 4hat_C Exportin-1; heat repeat 87.9 4.3 0.00015 47.5 13.9 139 396-537 465-619 (1023)
189 4hat_C Exportin-1; heat repeat 86.9 3.3 0.00011 48.6 12.1 142 354-498 465-621 (1023)
190 1lrv_A LRV, leucine-rich repea 86.7 0.47 1.6E-05 45.7 4.0 156 373-614 63-218 (244)
191 1lsh_A Lipovitellin (LV-1N, LV 86.4 29 0.00099 40.7 19.9 200 343-574 312-540 (1056)
192 2bnx_A Diaphanous protein homo 85.5 17 0.00058 37.3 15.4 146 465-610 46-223 (386)
193 3c2g_A SYS-1 protein; beta-cat 85.4 21 0.00072 35.7 14.8 116 360-477 261-378 (619)
194 1weo_A Cellulose synthase, cat 83.6 2 6.7E-05 33.6 5.3 48 248-295 15-69 (93)
195 3ibv_A Exportin-T; karyopherin 82.6 72 0.0025 37.0 20.8 285 302-617 21-359 (980)
196 3u0r_A Apoptosis inhibitor 5; 81.7 17 0.00059 38.0 13.2 129 468-615 31-159 (507)
197 3m1i_C Exportin-1; heat repeat 80.6 21 0.00072 41.9 15.6 186 384-579 344-571 (1049)
198 3ibv_A Exportin-T; karyopherin 80.5 48 0.0016 38.5 18.3 215 343-579 7-262 (980)
199 2cs3_A Protein C14ORF4, MY039 78.8 3.9 0.00013 31.1 5.3 36 247-282 13-52 (93)
200 3c2g_A SYS-1 protein; beta-cat 78.5 49 0.0017 33.1 14.5 126 490-616 266-400 (619)
201 3m1i_C Exportin-1; heat repeat 78.0 35 0.0012 39.9 16.4 220 341-578 15-264 (1049)
202 3l9t_A Putative uncharacterize 76.9 24 0.00082 33.3 11.5 144 427-589 73-219 (240)
203 1lsh_A Lipovitellin (LV-1N, LV 76.7 70 0.0024 37.5 18.2 165 385-579 392-578 (1056)
204 3qml_C Protein SLS1, nucleotid 75.5 32 0.0011 33.7 12.3 145 427-576 24-188 (315)
205 3qml_C Protein SLS1, nucleotid 75.3 33 0.0011 33.7 12.3 148 466-619 22-189 (315)
206 1x5b_A Signal transducing adap 72.7 10 0.00035 33.7 7.6 72 341-412 51-124 (163)
207 1mhq_A ADP-ribosylation factor 71.9 12 0.0004 32.7 7.6 73 341-413 37-116 (148)
208 3gjx_A Exportin-1; transport, 71.5 47 0.0016 38.9 14.8 220 340-578 26-276 (1073)
209 3ldz_A STAM-1, signal transduc 69.7 9.7 0.00033 32.9 6.6 72 341-412 41-113 (140)
210 3mjh_B Early endosome antigen 69.2 1.1 3.6E-05 28.5 0.2 16 248-263 4-19 (34)
211 1juq_A ADP-ribosylation factor 68.1 12 0.00042 33.4 7.1 73 341-413 49-128 (171)
212 3l9t_A Putative uncharacterize 67.8 39 0.0013 31.8 10.7 137 343-499 71-211 (240)
213 1x5b_A Signal transducing adap 66.2 14 0.00048 32.8 7.0 71 549-619 53-125 (163)
214 3ldz_A STAM-1, signal transduc 64.9 11 0.00037 32.6 5.8 71 549-619 43-114 (140)
215 1mhq_A ADP-ribosylation factor 62.7 17 0.00058 31.7 6.8 71 549-619 39-116 (148)
216 3a6p_A Exportin-5; exportin-5, 62.3 1.3E+02 0.0045 35.7 16.6 213 344-579 13-278 (1204)
217 3g2s_A C-terminal fragment of 62.0 22 0.00075 31.0 7.3 73 341-413 47-126 (149)
218 3gjx_A Exportin-1; transport, 60.6 2.2E+02 0.0074 33.3 17.6 212 386-618 30-274 (1073)
219 3gae_A Protein DOA1; UFD3, CDC 59.7 13 0.00044 35.7 5.9 102 394-498 100-220 (253)
220 2ko5_A Ring finger protein Z; 59.3 5.5 0.00019 31.4 2.5 50 247-298 26-75 (99)
221 1juq_A ADP-ribosylation factor 59.0 17 0.00058 32.5 6.2 71 549-619 51-128 (171)
222 2jvx_A NF-kappa-B essential mo 59.0 2.7 9.3E-05 25.3 0.6 15 248-262 2-16 (28)
223 3a6p_A Exportin-5; exportin-5, 58.2 2.9E+02 0.0099 32.7 20.3 250 352-612 57-373 (1204)
224 2k5c_A Uncharacterized protein 56.3 4.7 0.00016 30.7 1.6 54 250-303 9-70 (95)
225 2o35_A Hypothetical protein DU 56.2 4.6 0.00016 32.1 1.6 13 270-282 42-54 (105)
226 3fyb_A Protein of unknown func 55.8 4.7 0.00016 32.0 1.6 13 270-282 41-53 (104)
227 3g2s_A C-terminal fragment of 54.5 23 0.00078 30.9 6.1 71 549-619 49-126 (149)
228 1m3v_A FLIN4, fusion of the LI 54.3 8 0.00028 32.4 3.1 51 248-299 31-84 (122)
229 3zyq_A Hepatocyte growth facto 50.9 28 0.00095 32.7 6.6 73 341-413 44-118 (226)
230 1dvp_A HRS, hepatocyte growth 49.9 27 0.00093 32.5 6.3 72 341-412 41-114 (220)
231 1elk_A Target of MYB1; superhe 49.1 48 0.0016 29.0 7.5 72 341-412 52-129 (157)
232 1vdy_A Hypothetical protein (R 48.3 24 0.00082 30.4 5.1 74 549-622 50-133 (140)
233 3pst_A Protein DOA1; protein d 46.6 56 0.0019 33.7 8.4 129 359-497 243-391 (425)
234 3gae_A Protein DOA1; UFD3, CDC 46.4 22 0.00074 34.1 5.1 131 477-612 101-251 (253)
235 2xqn_T Testin, TESS; metal-bin 44.9 12 0.00042 31.3 2.8 46 248-296 29-75 (126)
236 1dvp_A HRS, hepatocyte growth 44.8 41 0.0014 31.3 6.7 71 549-619 43-115 (220)
237 3l3f_X Protein DOA1, DOA1/UFD3 43.8 40 0.0014 34.0 6.8 129 359-496 180-327 (362)
238 3zyq_A Hepatocyte growth facto 43.7 27 0.00092 32.8 5.2 71 549-619 46-118 (226)
239 6rxn_A Rubredoxin; electron tr 43.5 7.7 0.00026 26.4 1.0 13 245-257 26-38 (46)
240 2jne_A Hypothetical protein YF 41.6 1.1 3.8E-05 35.5 -3.9 40 250-295 33-72 (101)
241 1e8j_A Rubredoxin; iron-sulfur 39.3 12 0.00041 26.2 1.4 14 244-257 31-44 (52)
242 4rxn_A Rubredoxin; electron tr 38.2 10 0.00035 26.8 1.0 13 245-257 32-44 (54)
243 1x61_A Thyroid receptor intera 37.1 39 0.0013 24.7 4.3 34 248-281 32-66 (72)
244 2xjy_A Rhombotin-2; oncoprotei 36.5 24 0.00081 29.7 3.3 49 247-296 27-78 (131)
245 3pst_A Protein DOA1; protein d 36.2 2.5E+02 0.0084 28.9 11.3 132 477-612 273-423 (425)
246 3o2t_A Symplekin; heat repeat, 36.1 3.2E+02 0.011 27.7 12.1 186 342-536 25-256 (386)
247 1rut_X Flinc4, fusion protein 35.5 15 0.00052 33.3 2.0 47 248-296 31-81 (188)
248 2kn9_A Rubredoxin; metalloprot 34.2 15 0.00051 28.3 1.4 14 244-257 55-68 (81)
249 2jtn_A LIM domain-binding prot 33.6 43 0.0015 30.0 4.8 47 248-297 86-132 (182)
250 1yk4_A Rubredoxin, RD; electro 33.3 14 0.00047 25.9 1.0 13 245-257 31-43 (52)
251 2v3b_B Rubredoxin 2, rubredoxi 32.6 14 0.00048 26.2 1.0 13 245-257 32-44 (55)
252 2rgt_A Fusion of LIM/homeobox 32.1 47 0.0016 29.3 4.7 48 247-297 31-78 (169)
253 1elk_A Target of MYB1; superhe 31.9 94 0.0032 27.1 6.5 71 549-619 54-130 (157)
254 3l3f_X Protein DOA1, DOA1/UFD3 31.5 1.4E+02 0.0048 30.0 8.5 132 477-612 210-360 (362)
255 2kkx_A Uncharacterized protein 31.1 48 0.0016 26.4 3.8 51 246-297 24-80 (102)
256 2jrp_A Putative cytoplasmic pr 30.4 2.9 9.8E-05 32.3 -3.2 40 250-295 3-42 (81)
257 1iml_A CRIP, cysteine rich int 30.3 38 0.0013 25.2 3.2 45 247-294 25-71 (76)
258 2cup_A Skeletal muscle LIM-pro 30.3 33 0.0011 27.2 3.0 46 248-296 32-78 (101)
259 1dx8_A Rubredoxin; electron tr 29.7 17 0.00057 27.2 1.0 13 245-257 36-48 (70)
260 3gs3_A Symplekin, LD45768P; he 29.1 3.7E+02 0.013 25.4 13.6 145 342-494 15-172 (257)
261 3vhs_A ATPase wrnip1; zinc fin 27.9 15 0.00053 21.2 0.4 11 250-260 7-17 (29)
262 3pwf_A Rubrerythrin; non heme 27.5 92 0.0031 27.6 5.7 14 247-260 136-149 (170)
263 1s24_A Rubredoxin 2; electron 26.8 21 0.00072 27.9 1.1 13 245-257 64-76 (87)
264 2d8x_A Protein pinch; LIM doma 25.1 55 0.0019 23.8 3.2 34 248-281 30-64 (70)
265 1x62_A C-terminal LIM domain p 24.6 69 0.0023 24.0 3.8 40 247-295 13-52 (79)
266 3uk3_C Zinc finger protein 217 24.4 33 0.0011 23.2 1.8 40 249-295 4-43 (57)
267 3gs3_A Symplekin, LD45768P; he 23.9 4.6E+02 0.016 24.7 12.4 131 481-618 30-172 (257)
268 2fiy_A Protein FDHE homolog; F 23.6 7.4 0.00025 38.5 -2.6 46 247-293 180-231 (309)
269 2kw6_A Cyclin-dependent kinase 23.3 19 0.00064 26.1 0.2 38 45-85 16-56 (65)
270 3vld_A DNA mismatch repair pro 22.4 6.8E+02 0.023 26.1 12.1 81 461-545 111-194 (500)
271 2xpp_A IWS1, ECU08_0440; trans 21.3 3.9E+02 0.013 22.9 8.7 87 483-572 37-131 (145)
272 1sz9_A PCF11 protein; RNA poly 20.9 2.5E+02 0.0086 23.9 7.0 70 549-618 44-113 (144)
273 4atg_A TAF6; transcription, TF 20.8 3.5E+02 0.012 24.5 8.2 137 427-575 13-160 (196)
274 1wig_A KIAA1808 protein; LIM d 20.7 43 0.0015 24.8 1.8 35 247-281 29-65 (73)
275 2d8z_A Four and A half LIM dom 20.6 72 0.0025 23.0 3.1 33 248-280 30-63 (70)
276 2l4z_A DNA endonuclease RBBP8, 20.1 57 0.002 27.1 2.7 38 249-295 61-99 (123)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=5.4e-31 Score=274.63 Aligned_cols=263 Identities=22% Similarity=0.263 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-----------CCHHHHHHHHHHHHhhccCCc-chHHHhh-
Q 006877 357 EEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLSINDS-NKGTIVN- 423 (627)
Q Consensus 357 ~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~nLs~~~~-~k~~i~~- 423 (627)
..+.+|++.|.+++. ++++|..+++.|++++|+.+|.+ .++.+|.+|+++|.||+.+++ +|..+..
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 445689999999997 58999999999999999999952 247799999999999998754 7777764
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCC--chhhHHhhhhCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcc-CCCc
Q 006877 424 AGAIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSI-YQGN 499 (627)
Q Consensus 424 ~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~~ 499 (627)
.|+|+.|+++|+++++++++.|+++|.||+.. ++++..+.+.|++|+|+++| .+++..+++.|+.+|+||+. ++++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 56699999999999999999999999999975 47899999999999999975 56788999999999999999 6678
Q ss_pred hHHHH-HcCChHHHHHhhccCCh----hhHHHHHHHHHHHhc----ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHH
Q 006877 500 KARAV-RAGIVPPLMRFLKDAGG----GMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAA 570 (627)
Q Consensus 500 ~~~l~-~~g~v~~Lv~lL~~~~~----~~~~~Al~~L~~L~~----~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~ 570 (627)
+..++ ..|+++.|+++|.+.+. .+++.|+++|.||+. .++++..+.+.|+++.|+.+|++++..+++.|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 88888 68999999999987554 489999999999996 8899999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 571 VLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 571 ~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
+|.+|+..+++.+..+.+.|+++.|++++.++++++++.|.++|++|...
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999988889999999999999999999999999999999999999764
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.8e-30 Score=281.92 Aligned_cols=279 Identities=21% Similarity=0.277 Sum_probs=243.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTI 421 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~i 421 (627)
.++.|+..|.+++++.|..|++.|++++.+++.++..+++.|+||.|+++|+++++.++..|+++|.||+.+ +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 578999999999999999999999999988888898999999999999999999999999999999999987 8899999
Q ss_pred hhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc--------cC--------CHHHHH
Q 006877 422 VNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC--------DG--------TPRGKK 484 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~ 484 (627)
++.|+++.|+++|+ ++++++++.|+|+|+||+..++++..+++ |++|+|+.+|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999999999999 99999999993 22 345667
Q ss_pred HHHHHHHHhccCCCchHHHHHc-CChHHHHHhhcc------CChhhHHHHHHHHHHHhcCh-------------------
Q 006877 485 DAATAIFNLSIYQGNKARAVRA-GIVPPLMRFLKD------AGGGMVDEALAILAILASHQ------------------- 538 (627)
Q Consensus 485 ~a~~aL~nL~~~~~~~~~l~~~-g~v~~Lv~lL~~------~~~~~~~~Al~~L~~L~~~~------------------- 538 (627)
.|+++|+||+.+++++..+++. |++++|+.+|.+ .+..+++.|+.+|.||+...
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999998888889997 999999999975 46678999999999997421
Q ss_pred --------------------------------hhHHHHhhCCChHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCHHH---
Q 006877 539 --------------------------------EGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVLWAICTGDAEQ--- 582 (627)
Q Consensus 539 --------------------------------~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~A~~~L~~L~~~~~~~--- 582 (627)
.+.+.+++.|+++.|+.+|.++ ++.+++.|+++|.|||.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 1223345567789999999864 6899999999999999865322
Q ss_pred H-H-HHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHHh
Q 006877 583 L-K-IARELDAEEALKELSESGTDRAKRKAGSILELLQRIDM 622 (627)
Q Consensus 583 ~-~-~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~~ 622 (627)
. + .+.+.|+++.|++++.+++.++++.|.++|++|....+
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2 3 33468999999999999999999999999999986443
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=8.7e-30 Score=273.24 Aligned_cols=261 Identities=22% Similarity=0.259 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-----------CCHHHHHHHHHHHHhhccCCc-chHHHh-hcC
Q 006877 359 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLSINDS-NKGTIV-NAG 425 (627)
Q Consensus 359 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~nLs~~~~-~k~~i~-~~g 425 (627)
+.+|++.|.+++. ++++|..+.+.|++++|+.+|.. .++.++.+|+++|.||+.+++ ++..+. ..|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 4589999999986 69999999999999999999952 246789999999999998765 666665 456
Q ss_pred ChHHHHHHHccCCHHHHHHHHHHHHHhcCC--chhhHHhhhhCcHHHHHHHh-ccCCHHHHHHHHHHHHHhcc-CCCchH
Q 006877 426 AIPDIVDVLKNGSMEARENAAATLFSLSVI--DENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSI-YQGNKA 501 (627)
Q Consensus 426 ~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~-~~~~~~ 501 (627)
+|+.|+++|+++++++++.|+++|.+|+.. +.++..+.+.|++++|+++| .+++..+++.|+.+|+||+. +++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 799999999999999999999999999984 46899999999999999975 55788999999999999999 778888
Q ss_pred HHH-HcCChHHHHHhhccCCh----hhHHHHHHHHHHHhc----ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHH
Q 006877 502 RAV-RAGIVPPLMRFLKDAGG----GMVDEALAILAILAS----HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVL 572 (627)
Q Consensus 502 ~l~-~~g~v~~Lv~lL~~~~~----~~~~~Al~~L~~L~~----~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L 572 (627)
.++ ..|+++.|+++|.+.+. .+++.|+++|+||+. +++++..+.+.|+++.|+.+|.+++..++++|+++|
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 888 68999999999987554 389999999999995 788999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 573 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 573 ~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
++|+..+++.+..+.+.|+++.|++++.++++++++.|.++|++|...
T Consensus 404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999988899999999999999999999999999999999999999754
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.7e-29 Score=276.78 Aligned_cols=280 Identities=22% Similarity=0.275 Sum_probs=241.9
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC--Ccch
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN--DSNK 418 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~--~~~k 418 (627)
.+.++.|+.+|.+++++.|..|++.|.+++..+..+|..+++.|+||+||++|++++..+|++|+++|.||+.+ +++|
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 45799999999999999999999999999998999999999999999999999999999999999999999984 7899
Q ss_pred HHHhhcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc------------------cCC
Q 006877 419 GTIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC------------------DGT 479 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~------------------~~~ 479 (627)
..|++.|+|+.|+++|++ ++.+++++++++|++||..++++..|++ +++++|++++. ..+
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999997 5789999999999999999999999995 57999999872 124
Q ss_pred HHHHHHHHHHHHHhccCCC-chHHHHHc-CChHHHHHhhcc------CChhhHHHHHHHHHHHhcChh------------
Q 006877 480 PRGKKDAATAIFNLSIYQG-NKARAVRA-GIVPPLMRFLKD------AGGGMVDEALAILAILASHQE------------ 539 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~-~~~~l~~~-g~v~~Lv~lL~~------~~~~~~~~Al~~L~~L~~~~~------------ 539 (627)
..++++|+++|.||+.+.+ ++..+++. |+++.|+.+|.+ .+...++.|+.+|+||+...+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 7899999999999999765 48888885 667899999974 466789999999999997621
Q ss_pred --------------hHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCH----HHHHHHHHcCcHHHHHHhhh
Q 006877 540 --------------GKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDA----EQLKIARELDAEEALKELSE 600 (627)
Q Consensus 540 --------------~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~~----~~~~~~~~~g~i~~L~~l~~ 600 (627)
+...+.+.++++.|+.+|+. .++.++++|+++|.+||.+.. .....+.+.|+++.|+.|+.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 11122333456788999964 679999999999999998752 22334556799999999999
Q ss_pred cCChHHHHHHHHHHHHHHhHH
Q 006877 601 SGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 601 ~~~~~~k~~A~~lL~~l~~~~ 621 (627)
++++++++.|.++|++|....
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhCCh
Confidence 999999999999999998643
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=3.6e-29 Score=271.71 Aligned_cols=285 Identities=20% Similarity=0.224 Sum_probs=249.8
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCc
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~nLs~~~~ 416 (627)
..+.|.++.|++.|.+++++.|..|++.|++++.+++++|..+++.|+||.|+++|+ ++++++++.|+++|.||+.+++
T Consensus 40 i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~ 119 (457)
T 1xm9_A 40 VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119 (457)
T ss_dssp HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH
Confidence 456789999999999999999999999999999988999999999999999999999 8899999999999999999999
Q ss_pred chHHHhhcCChHHHHHHH--------ccC--------CHHHHHHHHHHHHHhcCCchhhHHhhhh-CcHHHHHHHhccC-
Q 006877 417 NKGTIVNAGAIPDIVDVL--------KNG--------SMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDG- 478 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL--------~~~--------~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~- 478 (627)
+|..+++ |+++.|+++| +++ +.++..+|+|+|+||+..++++..+.+. |++++|+.+|.++
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 9999999 9999999999 333 3456669999999999988899999998 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 006877 479 -------------------------------------------------------------------------------- 478 (627)
Q Consensus 479 -------------------------------------------------------------------------------- 478 (627)
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence
Q ss_pred ------------------CHHHHHHHHHHHHHhccCCCch-----HHHH-HcCChHHHHHhhccCChhhHHHHHHHHHHH
Q 006877 479 ------------------TPRGKKDAATAIFNLSIYQGNK-----ARAV-RAGIVPPLMRFLKDAGGGMVDEALAILAIL 534 (627)
Q Consensus 479 ------------------~~~~~~~a~~aL~nL~~~~~~~-----~~l~-~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L 534 (627)
++.+++.|+++|.||+...... ..++ +.|++|.|+++|.+++..++..|+++|.||
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 2345566889999999865432 1233 589999999999999999999999999999
Q ss_pred hcChhhHHHHhhCCChHHHHHHHhcCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC-ChHHH
Q 006877 535 ASHQEGKTAIGQAEPIPVLMEVIRTGS------PRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG-TDRAK 607 (627)
Q Consensus 535 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~------~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~-~~~~k 607 (627)
+.+++.+..+.. |+++.|+++|.+++ +++...++.+|.++...+++....+.+.|+++.|+.++.++ +++++
T Consensus 359 s~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~ 437 (457)
T 1xm9_A 359 SRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437 (457)
T ss_dssp HTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred hcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence 999888876654 79999999998764 35788999999999998989999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhHHhhh
Q 006877 608 RKAGSILELLQRIDMAV 624 (627)
Q Consensus 608 ~~A~~lL~~l~~~~~~~ 624 (627)
++|.++|.++..+.++.
T Consensus 438 ~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 438 EAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHcchhhh
Confidence 99999999998776654
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=1.7e-28 Score=277.52 Aligned_cols=280 Identities=15% Similarity=0.161 Sum_probs=252.3
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-----------------------------hhH---HHHHhcCCHH
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-----------------------------DNR---VCIAEAGAIP 387 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-----------------------------~~r---~~i~~~g~i~ 387 (627)
+.+.++.|+.+|++++...+..|++.|.+++.+.+ ..+ ..+++.|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 56899999999999999999999999999997442 123 6788999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhh---h
Q 006877 388 LLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG---A 464 (627)
Q Consensus 388 ~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~---~ 464 (627)
.|+.+|+++++.+|++|+|+|.||+.++++|..+++.|++++|+.+|+++++..++.|+|+|.+|+...+....+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999998899999999999999999999999999999999999987654433332 1
Q ss_pred hCcHHHHHHHhccC-CHHHHHHHHHHHHHhccCC-CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH
Q 006877 465 AGAIPALIRLLCDG-TPRGKKDAATAIFNLSIYQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 542 (627)
Q Consensus 465 ~g~i~~Lv~lL~~~-~~~~~~~a~~aL~nL~~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~ 542 (627)
.|++|+|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.+|.++++.++..|+.+|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 37999999999876 4455678999999999975 678889999999999999999999999999999999999999988
Q ss_pred HHhh-CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 543 AIGQ-AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARE-LDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 543 ~i~~-~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.+.. .|+++.|+.++.+++..+++.|+++|.+|+.+++..+..+++ .|+++.|+.++.+++..+++.|.++|.++..
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 8885 689999999999999999999999999999988888888888 8999999999999999999999999999964
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.96 E-value=6.9e-28 Score=265.45 Aligned_cols=282 Identities=20% Similarity=0.235 Sum_probs=254.5
Q ss_pred cccHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-C
Q 006877 338 DCDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-D 415 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~ 415 (627)
..+.|.++.|+++|++ +++++|.+|+++|.+++.++++++..+++.|+||.|+.+|++++..+++.|+++|+||+.+ +
T Consensus 96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~ 175 (510)
T 3ul1_B 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175 (510)
T ss_dssp HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 3466899999999975 4589999999999999999999999999999999999999999999999999999999987 5
Q ss_pred cchHHHhhcCChHHHHHHHccCC-----HHHHHHHHHHHHHhcCCchhhHHhhh-hCcHHHHHHHhccCCHHHHHHHHHH
Q 006877 416 SNKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKDAATA 489 (627)
Q Consensus 416 ~~k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~a 489 (627)
..+..+.+.|++++|+.+|...+ .....+++++|.+++........+.. .+++|.|+.++.+++++++..|+++
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66888889999999999998653 45788999999999987755544444 5899999999999999999999999
Q ss_pred HHHhccCCCchH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHH
Q 006877 490 IFNLSIYQGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNREN 567 (627)
Q Consensus 490 L~nL~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 567 (627)
|.+|+.+..++. .+++.|+++.|+.+|.+++..++..|+.+|+|++.. +..+..+++.|+++.|+.+|.++++.+++.
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~ 335 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence 999999876665 466789999999999999999999999999999885 566778889999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 568 AAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 568 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
|+++|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999864
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=8.2e-29 Score=258.13 Aligned_cols=246 Identities=19% Similarity=0.210 Sum_probs=221.3
Q ss_pred CcccHhHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhhhChhhHHHHHhc-CCHHHHHHHhcCCCHHHHHHH
Q 006877 337 SDCDRAAIDALLGKLAN-----------GNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSSTDPRTQEHA 404 (627)
Q Consensus 337 ~~~~~~~i~~Lv~~L~s-----------~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~~~~~~~~A 404 (627)
...+.|.++.|+..|.+ .+++.|..|++.|.+++..+..+|..+... |+||.|+++|+++++++++.|
T Consensus 68 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A 147 (354)
T 3nmw_A 68 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 147 (354)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHH
Confidence 45567899999999953 236789999999999998888889888655 569999999999999999999
Q ss_pred HHHHHhhccC--CcchHHHhhcCChHHHHHHH-ccCCHHHHHHHHHHHHHhcC-CchhhHHhh-hhCcHHHHHHHhccCC
Q 006877 405 VTALLNLSIN--DSNKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSV-IDENKVAIG-AAGAIPALIRLLCDGT 479 (627)
Q Consensus 405 ~~~L~nLs~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~~~ 479 (627)
+++|.||+.. +++|..+.+.|+++.|+++| ++++.++++.|+++|++|+. .++++..+. ..|+++.|+++|.+++
T Consensus 148 ~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~ 227 (354)
T 3nmw_A 148 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 227 (354)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCC
T ss_pred HHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCC
Confidence 9999999984 56899999999999999975 66789999999999999998 668888888 6799999999998875
Q ss_pred H----HHHHHHHHHHHHhcc----CCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCCh
Q 006877 480 P----RGKKDAATAIFNLSI----YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPI 550 (627)
Q Consensus 480 ~----~~~~~a~~aL~nL~~----~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v 550 (627)
+ ++++.|+++|.||+. +++++..+++.|+++.|+++|.+++..+++.|+++|+||+. +++++..+.+.|++
T Consensus 228 ~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i 307 (354)
T 3nmw_A 228 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307 (354)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHH
T ss_pred CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 4 589999999999996 77888899999999999999999999999999999999995 78899999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHH
Q 006877 551 PVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ 582 (627)
Q Consensus 551 ~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~ 582 (627)
+.|+.+|+++++++++.|+++|.+|+.+.+..
T Consensus 308 ~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 308 SMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999988753
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=1.9e-27 Score=263.29 Aligned_cols=282 Identities=20% Similarity=0.231 Sum_probs=255.7
Q ss_pred cccHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-C
Q 006877 338 DCDRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-D 415 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~ 415 (627)
..+.|.++.|++.|.. .+++.|..|+++|.+++.+++.++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +
T Consensus 115 ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGS 194 (529)
T ss_dssp HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCH
Confidence 3466899999999974 4589999999999999999999999999999999999999999999999999999999986 5
Q ss_pred cchHHHhhcCChHHHHHHHccCC-----HHHHHHHHHHHHHhcCCchhhHHhhh-hCcHHHHHHHhccCCHHHHHHHHHH
Q 006877 416 SNKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKDAATA 489 (627)
Q Consensus 416 ~~k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~a 489 (627)
.++..+.+.|++++|+.+|...+ ......++++|.+++........+.. .+++|.|+.++.+++++++..|+++
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 77888999999999999998653 46788999999999987755544443 5899999999999999999999999
Q ss_pred HHHhccCCCchH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHH
Q 006877 490 IFNLSIYQGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNREN 567 (627)
Q Consensus 490 L~nL~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 567 (627)
|.+|+.++.++. .++..|+++.|+.+|.+++..++..|+.+|+|++.. +..+..+++.|+++.|+.+|.++++.++..
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~ 354 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence 999999876655 466789999999999999999999999999999885 566778889999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 568 AAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 568 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
|+++|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999864
No 10
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=9.4e-28 Score=263.03 Aligned_cols=285 Identities=24% Similarity=0.248 Sum_probs=239.6
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCC
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKR-NADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND 415 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~ 415 (627)
..+.|.|+.|+++|.+++.++|..|++.|++|+.+ +.++|..|++.|+||.|+++|++ ++..++++|+++|+|||.++
T Consensus 86 V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~ 165 (584)
T 3l6x_A 86 VRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD 165 (584)
T ss_dssp HHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG
T ss_pred HHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc
Confidence 44668999999999999999999999999999985 68999999999999999999997 58899999999999999999
Q ss_pred cchHHHhhcCChHHHHHHHc------------------cCCHHHHHHHHHHHHHhcCCch-hhHHhhhh-CcHHHHHHHh
Q 006877 416 SNKGTIVNAGAIPDIVDVLK------------------NGSMEARENAAATLFSLSVIDE-NKVAIGAA-GAIPALIRLL 475 (627)
Q Consensus 416 ~~k~~i~~~g~i~~Lv~lL~------------------~~~~e~~~~aa~~L~~Ls~~~~-~~~~i~~~-g~i~~Lv~lL 475 (627)
++|..|+. ++++.|++++. ..+++++++|+++|+|||..++ ++..|.+. |+++.|+.++
T Consensus 166 ~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L 244 (584)
T 3l6x_A 166 SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIV 244 (584)
T ss_dssp GGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHH
T ss_pred hhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHH
Confidence 99999995 57999999872 1257899999999999998764 47777765 5566777666
Q ss_pred cc--------------------------------------------------------------------------CCHH
Q 006877 476 CD--------------------------------------------------------------------------GTPR 481 (627)
Q Consensus 476 ~~--------------------------------------------------------------------------~~~~ 481 (627)
++ .++.
T Consensus 245 ~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~ 324 (584)
T 3l6x_A 245 QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPA 324 (584)
T ss_dssp HHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred HHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHH
Confidence 42 1234
Q ss_pred HHHHHHHHHHHhccCCC-----chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHH
Q 006877 482 GKKDAATAIFNLSIYQG-----NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEV 556 (627)
Q Consensus 482 ~~~~a~~aL~nL~~~~~-----~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~l 556 (627)
+++.|++||.||+.+.. ++..+.+.|+++.|+++|.+++..++..|+++|.||+.++..+..| ..|+++.|+.+
T Consensus 325 v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~L 403 (584)
T 3l6x_A 325 ILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKN 403 (584)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHH
Confidence 44556666666655431 1222334688999999999999999999999999999998888766 67899999999
Q ss_pred HhcC--------CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC--ChHHHHHHHHHHHHHHhHHhhh
Q 006877 557 IRTG--------SPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQRIDMAV 624 (627)
Q Consensus 557 L~~~--------~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~--~~~~k~~A~~lL~~l~~~~~~~ 624 (627)
|.++ +..+...|+++|.||+..++++...+.+.|+++.|+.++.++ .+.+++.|.++|.+|..+.++.
T Consensus 404 L~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr 481 (584)
T 3l6x_A 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR 481 (584)
T ss_dssp SSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHH
Confidence 9876 467889999999999999999999999999999999999987 8999999999999998766553
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=259.75 Aligned_cols=281 Identities=20% Similarity=0.213 Sum_probs=246.4
Q ss_pred cccHhHHHHHHHHhcC------------CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCH----------HHHHHHhcC
Q 006877 338 DCDRAAIDALLGKLAN------------GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAI----------PLLVELLSS 395 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s------------~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i----------~~Lv~lL~~ 395 (627)
....|.++.|+++|+. ++++.+.+|++.|.+++...++......+.|++ +.+++++.+
T Consensus 66 ~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 145 (458)
T 3nmz_A 66 MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145 (458)
T ss_dssp HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 4577899999999986 337999999999999999888888888888888 777888877
Q ss_pred CC--HH-----HHH-------HHHHHHHhhccCCcchHHHhhcCChHHHHHHHcc-----------CCHHHHHHHHHHHH
Q 006877 396 TD--PR-----TQE-------HAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKN-----------GSMEARENAAATLF 450 (627)
Q Consensus 396 ~~--~~-----~~~-------~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~e~~~~aa~~L~ 450 (627)
.. .+ +++ +|+++|.|++.++++|..|.+.|++++|+.+|.. .+++++.+|+|+|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~ 225 (458)
T 3nmz_A 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225 (458)
T ss_dssp TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred hccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHH
Confidence 52 22 444 8999999999999999999999999999999952 24678999999999
Q ss_pred HhcCCch-hhHHhhh-hCcHHHHHHHhccCCHHHHHHHHHHHHHhccC--CCchHHHHHcCChHHHHHhh-ccCChhhHH
Q 006877 451 SLSVIDE-NKVAIGA-AGAIPALIRLLCDGTPRGKKDAATAIFNLSIY--QGNKARAVRAGIVPPLMRFL-KDAGGGMVD 525 (627)
Q Consensus 451 ~Ls~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--~~~~~~l~~~g~v~~Lv~lL-~~~~~~~~~ 525 (627)
||+..++ ++..+.. .|+||+|+.+|.+++++++..|+++|.||+.. ++++..+++.|+|++|+++| .+.+..+++
T Consensus 226 nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 9998775 6666654 47799999999999999999999999999985 45788899999999999986 456788999
Q ss_pred HHHHHHHHHhc-ChhhHHHHh-hCCChHHHHHHHhcCCH----HHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHH
Q 006877 526 EALAILAILAS-HQEGKTAIG-QAEPIPVLMEVIRTGSP----RNRENAAAVLWAICT---GDAEQLKIARELDAEEALK 596 (627)
Q Consensus 526 ~Al~~L~~L~~-~~~~~~~i~-~~g~v~~Lv~lL~~~~~----~~~~~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~ 596 (627)
.|+.+|+||+. .++++..+. ..|+++.|+.+|.++++ .+++.|+++|.+|+. .+++++..+.+.|+++.|+
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv 385 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence 99999999999 778888887 68999999999997654 489999999999997 7888999999999999999
Q ss_pred HhhhcCChHHHHHHHHHHHHHH
Q 006877 597 ELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 597 ~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
.++.+++..+++.|.++|.+|.
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999997
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=1.8e-27 Score=269.17 Aligned_cols=284 Identities=17% Similarity=0.154 Sum_probs=255.9
Q ss_pred ccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcch
Q 006877 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 418 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k 418 (627)
.+.|.++.|+.+|.++++.+|.+|++.|.+++. +.++|..+++.|++|+|+.+|.++++..++.|+++|.||+.+.+..
T Consensus 492 veaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~ 570 (810)
T 3now_A 492 ANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570 (810)
T ss_dssp HHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh
Confidence 356899999999999999999999999999995 6779999999999999999999999999999999999998754433
Q ss_pred HHHh---hcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 006877 419 GTIV---NAGAIPDIVDVLKNG-SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 493 (627)
Q Consensus 419 ~~i~---~~g~i~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 493 (627)
..+. ..|++++|+++|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.++.++++.+++.|+++|+||
T Consensus 571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650 (810)
T ss_dssp HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3221 246999999999876 4555678999999999874 7889999999999999999999999999999999999
Q ss_pred ccCCCchHHHHH-cCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhh-CCChHHHHHHHhcCCHHHHHHHHH
Q 006877 494 SIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQ-AEPIPVLMEVIRTGSPRNRENAAA 570 (627)
Q Consensus 494 ~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~A~~ 570 (627)
+.+++.+..++. .|+++.|+.++.+++..++..|+++|+||+. ++.....+++ .|+++.|+.+|.+++..++..|++
T Consensus 651 a~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp TTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred hCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 999988888886 7899999999999999999999999999999 7888888888 899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC---ChHHHHHHHHHHHHHHhHHhh
Q 006877 571 VLWAICTGDAEQLKIARELDAEEALKELSESG---TDRAKRKAGSILELLQRIDMA 623 (627)
Q Consensus 571 ~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~---~~~~k~~A~~lL~~l~~~~~~ 623 (627)
+|.|++.++++....+.+.|++++|..+++.. ++++.+.|..+|+.+-++..+
T Consensus 731 aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 99999998888999999999999999998654 789999999999999876654
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=5.5e-26 Score=251.54 Aligned_cols=282 Identities=20% Similarity=0.247 Sum_probs=258.4
Q ss_pred ccHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Cc
Q 006877 339 CDRAAIDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DS 416 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~ 416 (627)
...+.++.|+..|.+.+ ++++..|++.|.+++.++++++..+++.|++|.|+.+|.++++.+++.|+++|.||+.+ +.
T Consensus 114 ~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 193 (528)
T 4b8j_A 114 IQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK 193 (528)
T ss_dssp HHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh
Confidence 34578999999999887 99999999999999998899999999999999999999999999999999999999977 45
Q ss_pred chHHHhhcCChHHHHHHH-ccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 417 NKGTIVNAGAIPDIVDVL-KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL-~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
++..+...|+++.|+.+| .+.++.++..++++|.+|+............|+++.|+.++.++++.++..|+++|.+|+.
T Consensus 194 ~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 194 CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 688888999999999999 5678999999999999999886555556668999999999999999999999999999998
Q ss_pred CCCch-HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcC-CHHHHHHHHHHH
Q 006877 496 YQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTG-SPRNRENAAAVL 572 (627)
Q Consensus 496 ~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~A~~~L 572 (627)
..+++ ..+++.|+++.|+.+|.++++.++..|+.+|++|+. .+.....+++.|+++.|+.+|.++ ++.++..|+++|
T Consensus 274 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L 353 (528)
T 4b8j_A 274 GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTI 353 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77665 467789999999999999999999999999999998 456677788899999999999998 899999999999
Q ss_pred HHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 573 WAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 573 ~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
.+|+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++...
T Consensus 354 ~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 354 SNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 999999988888999999999999999999999999999999999765
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=8.8e-26 Score=249.89 Aligned_cols=284 Identities=18% Similarity=0.177 Sum_probs=253.5
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHhhc
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD-----PRTQEHAVTALLNLS 412 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~nLs 412 (627)
..+.|.++.|+.+|.+++.+++..|++.|.+++.+++.+|..+.+.|++++|+.+|..++ ..++.+++++|.+++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 346689999999999999999999999999999999999999999999999999998754 357889999999999
Q ss_pred cCCcchHHH-hhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh-hHHhhhhCcHHHHHHHhccCCHHHHHHHHHHH
Q 006877 413 INDSNKGTI-VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLCDGTPRGKKDAATAI 490 (627)
Q Consensus 413 ~~~~~k~~i-~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 490 (627)
.+......+ ...|+++.|+.+|.+++++++..|+|+|.+|+..... ...+...|+++.|+.+|.+++..++..|+.+|
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 875444333 3578899999999999999999999999999987754 45566779999999999999999999999999
Q ss_pred HHhccCC-CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHHH
Q 006877 491 FNLSIYQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 568 (627)
Q Consensus 491 ~nL~~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A 568 (627)
.||+.+. .....+++.|+++.|+.+|.+++..++..|+++|+||+.+ +..+..+.+.|+++.|+.++.+++..++..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 9998765 4566788999999999999999999999999999999984 6667788899999999999999999999999
Q ss_pred HHHHHHHhcC-CHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHH
Q 006877 569 AAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 569 ~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~ 621 (627)
+++|.|++.+ +++.+..+++.|++++|+.++.+.++++...+..+|.++-+..
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999874 5678888999999999999999999999999999999886543
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=1.3e-25 Score=247.34 Aligned_cols=283 Identities=18% Similarity=0.185 Sum_probs=252.1
Q ss_pred cccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCC-----HHHHHHHHHHHHhhc
Q 006877 338 DCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTD-----PRTQEHAVTALLNLS 412 (627)
Q Consensus 338 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~A~~~L~nLs 412 (627)
..+.|.++.|+..|.+++.+++..|++.|.+++.+++.+|..+.+.|++++|+.+|.+++ ..++.+++++|.|++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999999999999999999999998764 357889999999999
Q ss_pred cCCcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHhhhhCcHHHHHHHhccCCHHHHHHHHHHH
Q 006877 413 INDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAI 490 (627)
Q Consensus 413 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL 490 (627)
.+......+. ..|+++.|+++|.+++++++..|+++|.+|+.....+ ..+...|+++.|+.+|.+++..++..++.+|
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 8755444333 5788999999999999999999999999999877554 5566779999999999999999999999999
Q ss_pred HHhccCCC-chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHH
Q 006877 491 FNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENA 568 (627)
Q Consensus 491 ~nL~~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A 568 (627)
.||+...+ .+..+++.|+++.|+.+|.+++..++..|+++|+||+. .++.+..+.+.|+++.|+.++.+++..++..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 99988654 55678899999999999999999999999999999998 46677888899999999999999999999999
Q ss_pred HHHHHHHhcC-CHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 569 AAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 569 ~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
+++|.|++.+ +++.+..+++.|++++|+.++.+.++++...+.++|.++-+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999874 567888899999999999999999999999999999988654
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=3.5e-25 Score=245.13 Aligned_cols=278 Identities=22% Similarity=0.243 Sum_probs=253.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCHHHHHHHhcCCC-HHHHHHHHHHHHhhccC-Ccch
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSSTD-PRTQEHAVTALLNLSIN-DSNK 418 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~~L~nLs~~-~~~k 418 (627)
..++.++..|.+++++.+..|++.|+.++.... .....+++.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 468999999999999999999999999976544 67888999999999999999986 99999999999999986 6778
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHh-ccCCHHHHHHHHHHHHHhccC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLL-CDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~ 496 (627)
..++..|+++.|+.+|.+++++++..|+++|.+|+... .++..+...|++++|+.++ .+.+..++..|+++|.||+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 88889999999999999999999999999999998764 5788888889999999999 567899999999999999998
Q ss_pred CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH-HHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006877 497 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK-TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 575 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~-~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L 575 (627)
..........|+++.|+.+|.+.++.++..|+++|.+|+.....+ ..+.+.|+++.|+.+|.++++.++..|+++|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 666666667999999999999999999999999999999876554 6777889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHHHHh
Q 006877 576 CTGDAEQLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 619 (627)
Q Consensus 576 ~~~~~~~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~l~~ 619 (627)
+.+++.....+.+.|+++.|+.++.++ ++.+++.|.++|.++..
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999988889999999999999999999 99999999999999974
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1.4e-25 Score=222.80 Aligned_cols=239 Identities=29% Similarity=0.356 Sum_probs=222.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~ 420 (627)
+.++.|+..|.+++++.+..|++.|.+++..++.++..+.+.|+++.|+++|+++++.++..|+++|.+++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3689999999999999999999999999998888999999999999999999999999999999999999987 788889
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhc-CCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC-
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLS-VIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG- 498 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~- 498 (627)
+.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|++++.++++.++..|+++|.||+...+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 556788899999999999999999999999999999999998655
Q ss_pred chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 499 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 499 ~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
.+..+++.|+++.|+.+|.++++.++..|+.+|.+++. +++.+..+.+.|+++.|+.+++++++.+++.|+++|.+|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 44678899999999999999999999999999999998 56778888899999999999999999999999999999998
Q ss_pred CCH
Q 006877 578 GDA 580 (627)
Q Consensus 578 ~~~ 580 (627)
..+
T Consensus 242 ~~~ 244 (252)
T 4hxt_A 242 GGW 244 (252)
T ss_dssp TCB
T ss_pred CCC
Confidence 654
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=1.7e-25 Score=222.05 Aligned_cols=238 Identities=28% Similarity=0.340 Sum_probs=222.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCC-cchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHH
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVA 461 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~-~~~~~~ 461 (627)
|+||.|+++|.++++.++..|+++|.+++..+ +++..+.+.|+++.|+.+|++++++++..|+++|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999998875 4888899999999999999999999999999999999988 688999
Q ss_pred hhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc-CCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hh
Q 006877 462 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QE 539 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~ 539 (627)
+.+.|+++.|+.++.++++.++..|+++|.||+. .++++..+++.|+++.|+++|.++++.++..|+++|++|+.. +.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999994 667888899999999999999999999999999999999985 55
Q ss_pred hHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 540 GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 540 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.+..+.+.|+++.|+.++.++++.++..|+++|.+|+..++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HH
Q 006877 620 ID 621 (627)
Q Consensus 620 ~~ 621 (627)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=5.3e-25 Score=243.80 Aligned_cols=282 Identities=18% Similarity=0.167 Sum_probs=257.2
Q ss_pred ccHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Cc
Q 006877 339 CDRAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DS 416 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~ 416 (627)
...+.++.|+..|.+. ++.++..|++.|.+++..++.++..+++.|++|.|+.+|.++++.+++.|+++|.+|+.+ +.
T Consensus 127 ~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc
Confidence 3457899999999987 899999999999999998888999999999999999999999999999999999999987 46
Q ss_pred chHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 417 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
++..+...|+++.|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.++.++++.++..|+++|.+|+.
T Consensus 207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 7888888999999999999999999999999999999775 555556667999999999999999999999999999998
Q ss_pred CC-CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 006877 496 YQ-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 573 (627)
Q Consensus 496 ~~-~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~ 573 (627)
.. +....+++.|+++.|+.+|.+.+..++..|+.+|++++.. +.....+.+.|+++.|+.+|.++++.++..|+++|.
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 65 4566778899999999999999999999999999999985 556677788899999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 574 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 574 ~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
+|+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++...
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999888888889999999999999999999999999999999754
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1e-25 Score=224.43 Aligned_cols=236 Identities=24% Similarity=0.348 Sum_probs=217.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhcc-CCcchHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~-~~~~k~~ 420 (627)
...+.++..|.++++++|..|++.|+.+...+..++..+.+.|++|.|+++|+++++.++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 357899999999999999999999977665677888999999999999999999999999999999999998 5788889
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC-C
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-G 498 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~ 498 (627)
+.+.|+++.|+.+|++++++++..|+++|.+|+..+.++ ..+.+.|+++.|+++|.+++..++..|+++|.||+... +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999888 88888999999999999999999999999999999865 4
Q ss_pred chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 499 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 499 ~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
++..+++.|+++.|+++|.++++.++..|+++|++|+. +++.+..+.+.|+++.|+.+++++++.+++.|+++|.+|+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 55678889999999999999999999999999999996 56778888899999999999999999999999999999985
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=4e-24 Score=231.08 Aligned_cols=277 Identities=19% Similarity=0.207 Sum_probs=250.3
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCC-cchH
Q 006877 342 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SNKG 419 (627)
Q Consensus 342 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~-~~k~ 419 (627)
+.++.|++.|.++ +++++..|++.|.+++..++++...+.+.|++|.|+++|+++++.+++.|+++|.+++.+. ..+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999988 8999999999999999888888888889999999999999999999999999999999874 5778
Q ss_pred HHhhcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCc-h-hhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 006877 420 TIVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVID-E-NKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~-~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 496 (627)
.+.+.|+++.|+.+|.+ .+.+++..|+++|.+|+... . .+..+. .++++.|+.++.++++.++..++++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999996 68999999999999999764 2 223333 78999999999999999999999999999986
Q ss_pred C-CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh-hhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 006877 497 Q-GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 574 (627)
Q Consensus 497 ~-~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~-~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~ 574 (627)
. ++...++..|+++.|+.+|.++++.++..|+.+|++++... .....+.+.|+++.|+.++.++++.++..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5 45667788999999999999999999999999999999864 445667788999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 575 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 575 L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888889999999999999999999999999999999965
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=4.4e-24 Score=236.44 Aligned_cols=278 Identities=20% Similarity=0.233 Sum_probs=252.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-ChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhccC-Ccch
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKR-NADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSIN-DSNK 418 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~-~~~k 418 (627)
+.++.++..|.+++++.+..|+..|+.+... ...++..+++.|++|.|+.+|.++ ++.++..|+++|.+++.+ ++.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4689999999999999999999999998653 345667888999999999999997 899999999999999986 4567
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
..++..|+++.|+.+|.+++++++..|+++|.+|+... .++..+...|+++.|+.++.+.+..++..|+++|.||+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 77888999999999999999999999999999999874 67888888899999999999989999999999999999876
Q ss_pred -CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006877 498 -GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAI 575 (627)
Q Consensus 498 -~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L 575 (627)
+........|+++.|+.+|.++++.++..|+++|.+|+.. ++....+.+.|+++.|+.+|.++++.++..|+.+|.++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 5556667789999999999999999999999999999985 56677788889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 576 CTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 576 ~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++..
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99998888888999999999999999999999999999999974
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=5.5e-25 Score=219.05 Aligned_cols=236 Identities=25% Similarity=0.354 Sum_probs=219.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhh-ccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhhHH
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNL-SINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVA 461 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nL-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~-~~~~~~~ 461 (627)
...+.++++|.+++++++..|+++|.++ +.+++++..+++.|+++.|+++|++++++++..|+++|.+++. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4689999999999999999999999775 4456778889999999999999999999999999999999997 5688999
Q ss_pred hhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCch-HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hh
Q 006877 462 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QE 539 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~ 539 (627)
+.+.|+++.|+.+|.++++.++..|+++|.||+.+++++ ..+++.|+++.|+++|.+++..++..|+++|++|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999888 7889999999999999999999999999999999984 56
Q ss_pred hHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 540 GKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 540 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.+..+.+.|+++.|+.++.++++.+++.|+++|.+|+..++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 67778889999999999999999999999999999999999999999999999999999999999999999999998864
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=8.5e-24 Score=228.48 Aligned_cols=280 Identities=20% Similarity=0.184 Sum_probs=251.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCC--cc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND--SN 417 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~--~~ 417 (627)
.+.++.|+..|.+++++++..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999999999999888899999999999999999996 68999999999999998753 33
Q ss_pred hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 006877 418 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~ 496 (627)
+..+. .|+++.|+.++.+++++++..++++|.+|+... +.+..+...|+++.|+.++.+++..++..|+++|.||+..
T Consensus 186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 33333 789999999999999999999999999999865 5666777789999999999999999999999999999987
Q ss_pred CCch-HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 006877 497 QGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 574 (627)
Q Consensus 497 ~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~ 574 (627)
.+.. ..+++.|+++.|+.+|.++++.++..|+++|.+++. .++....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6554 457788999999999999999999999999999997 56677778888999999999999999999999999999
Q ss_pred HhcC-CHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHH
Q 006877 575 ICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 575 L~~~-~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~ 621 (627)
++.. +++....+.+.|+++.|+.++.++++++++.|.++|.++....
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9986 6777888889999999999999999999999999999887543
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=3.2e-23 Score=228.88 Aligned_cols=276 Identities=22% Similarity=0.256 Sum_probs=248.1
Q ss_pred HhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Ccch
Q 006877 341 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNK 418 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k 418 (627)
.+.++.|++.|.++ +++.+..|+..|++++. .++++..+.+.|++|.|+++|+++++.++..|+++|.+|+.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 47899999999765 89999999999999997 566999999999999999999999999999999999999887 5667
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHhhhhCcHHHHHHHhccCC-HHHHHHHHHHHHHhccC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGT-PRGKKDAATAIFNLSIY 496 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~ 496 (627)
..+.+.|+++.|+++|++++++++..++.+|.+++.. ++++..+.+.|+++.|+.++++++ ...+..++.+|.||+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 7788999999999999999999999999999999875 578889999999999999999875 45667788999999999
Q ss_pred CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 497 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
++++..+++.|+++.|++++.+++..++..++++|.+|+....... ...|+++.|+.+++++++.+++.|+++|.+|+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998654321 12378999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHhhhcC--ChHHHHHHHHHHHHHHh
Q 006877 577 TGDAEQLKIARELDAEEALKELSESG--TDRAKRKAGSILELLQR 619 (627)
Q Consensus 577 ~~~~~~~~~~~~~g~i~~L~~l~~~~--~~~~k~~A~~lL~~l~~ 619 (627)
.++++.+..+.+.|+++.|+.++.+. ++.++..|..+|.+|..
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 99988999999999999999999863 37999999999999864
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=9.3e-23 Score=231.14 Aligned_cols=276 Identities=22% Similarity=0.255 Sum_probs=248.6
Q ss_pred HhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Ccch
Q 006877 341 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNK 418 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k 418 (627)
.+.++.|++.|.++ +++.+..|+..|+.++. ..+++..+.+.|++|.|+.+|+++++.++..|+++|.||+.+ +..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47899999999875 79999999999999997 466999999999999999999999999999999999999886 4667
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhhHHhhhhCcHHHHHHHhccCC-HHHHHHHHHHHHHhccC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGT-PRGKKDAATAIFNLSIY 496 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~nL~~~ 496 (627)
..+.+.|+++.|+++|++++++++..++.+|.+|+. +++++..+.+.|+++.|+.++.+++ ...+..++.+|.||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 777789999999999999999989999999999996 6688999999999999999999865 66788999999999999
Q ss_pred CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 497 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
++++..+++.|+++.|+.++.+.+..++..++++|.+|+...... ....++++.|+.+|.++++.+++.|+++|.+|+
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999989999999999999999854321 112368999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHhhhcC-C-hHHHHHHHHHHHHHHh
Q 006877 577 TGDAEQLKIARELDAEEALKELSESG-T-DRAKRKAGSILELLQR 619 (627)
Q Consensus 577 ~~~~~~~~~~~~~g~i~~L~~l~~~~-~-~~~k~~A~~lL~~l~~ 619 (627)
.+++..+..+.+.|+++.|+.++.+. + +.++..|.++|.+|..
T Consensus 292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 99988999999999999999999874 3 7999999999999963
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=9.5e-23 Score=225.08 Aligned_cols=278 Identities=20% Similarity=0.169 Sum_probs=248.9
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Ccch
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNK 418 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k 418 (627)
+.+.++.|++.|.+++++++..|++.|.+++..++.++..+.+.|++|.|+++|.+++..++..++.+|.+++.. ++++
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 346899999999999999999999999999998888899999999999999999999999999999999999875 6788
Q ss_pred HHHhhcCChHHHHHHHccCC-HHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 419 GTIVNAGAIPDIVDVLKNGS-MEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~-~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
..+.+.|+++.++++|++++ ...+..++.+|.+|+..+.++..+.+.|+++.|+.++.++++.++..++++|.||+...
T Consensus 179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 88889999999999998875 56677888999999999999999999999999999999999999999999999999865
Q ss_pred CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhc--CCHHHHHHHHHHHHH
Q 006877 498 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRT--GSPRNRENAAAVLWA 574 (627)
Q Consensus 498 ~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~~~A~~~L~~ 574 (627)
.... ...|+++.|+++|.+.++.++..|+++|++|+.+ ++++..+.+.|+++.|+.+|.+ .++.+++.|+.+|.+
T Consensus 259 ~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 259 TKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4322 2247899999999999999999999999999996 5689999999999999999986 337899999999999
Q ss_pred HhcCCHH---HHHHHHHcCcHHHHHHhhhcCC-hHHHHHHHHHHHHHHh
Q 006877 575 ICTGDAE---QLKIARELDAEEALKELSESGT-DRAKRKAGSILELLQR 619 (627)
Q Consensus 575 L~~~~~~---~~~~~~~~g~i~~L~~l~~~~~-~~~k~~A~~lL~~l~~ 619 (627)
|+.++++ .+..+.+.|+++.|+.++.+++ +.+++.|.++|.++..
T Consensus 337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 9987543 4677889999999999999986 5899999999999874
No 28
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=203.23 Aligned_cols=195 Identities=18% Similarity=0.253 Sum_probs=176.1
Q ss_pred hHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Ccch
Q 006877 342 AAIDALLGKLANGNV--EEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNK 418 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~--~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k 418 (627)
..++.++++|.++++ +.|..|++.|++++.+++.+|..+.+.|+||+|+++|+++++.+|+.|+++|.||+.+ +++|
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 478999999999987 8899999999999999999999999999999999999999999999999999999984 7899
Q ss_pred HHHhhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc---c-------------CCHH
Q 006877 419 GTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---D-------------GTPR 481 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~-------------~~~~ 481 (627)
..|.+.|+|++|+++|+ +++.+++++|+.+|++||..+.+|..|++. ++++|++++. + .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 578999999999999999999999999874 7999998763 1 2568
Q ss_pred HHHHHHHHHHHhccC-CCchHHHHHc-CChHHHHHhhcc------CChhhHHHHHHHHHHHhcC
Q 006877 482 GKKDAATAIFNLSIY-QGNKARAVRA-GIVPPLMRFLKD------AGGGMVDEALAILAILASH 537 (627)
Q Consensus 482 ~~~~a~~aL~nL~~~-~~~~~~l~~~-g~v~~Lv~lL~~------~~~~~~~~Al~~L~~L~~~ 537 (627)
++.+|..+|+||+.. +++|..|.+. |+|+.|+.++.. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999985 5889999986 678999999975 2567899999999999864
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=9.8e-23 Score=230.93 Aligned_cols=276 Identities=21% Similarity=0.179 Sum_probs=247.2
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhc-CCHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCcc
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSST-DPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~~~ 417 (627)
..+.++.|+..|++.++.++..|+..|.+++.+. .++..+... |+++.|+++|.++ ++.++..|+.+|.+|+.++++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 4568999999999999999999999999999755 466666654 8999999999875 899999999999999999889
Q ss_pred hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc-
Q 006877 418 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI- 495 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~- 495 (627)
+..+.+.|+++.|+++|++++++++..|+++|.+|+..+ ..+..+.+.|+++.|+.+|.+++.+.+..++.+|.+|+.
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998774 567777788999999999999998888889999999997
Q ss_pred CCCchHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 006877 496 YQGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWA 574 (627)
Q Consensus 496 ~~~~~~~l~~~g~v~~Lv~lL~~~~-~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~ 574 (627)
+++++..+++.|+++.|+.+|.+.+ ...+..++.+|++|+.+++++..+.+.|+++.|+.++.++++.+++.|+++|.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6778889999999999999998744 567788999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 575 ICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 575 L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
||...+.. ....|+++.|+.++.++++.++..|.++|.+|..
T Consensus 251 L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 251 LSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred Hhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99876431 1123789999999999999999999999999865
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=7.6e-23 Score=198.99 Aligned_cols=193 Identities=16% Similarity=0.213 Sum_probs=173.5
Q ss_pred CHHHHHHHhcCCCH--HHHHHHHHHHHhhcc-CCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhhH
Q 006877 385 AIPLLVELLSSTDP--RTQEHAVTALLNLSI-NDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKV 460 (627)
Q Consensus 385 ~i~~Lv~lL~~~~~--~~~~~A~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~-~~~~~~ 460 (627)
.+|.|+++|+++++ .+|..|+++|.+|+. ++++|..|.+.|+||+|+++|+++++++++.|+++|.||+. +++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999988 899999999999996 56789999999999999999999999999999999999997 468999
Q ss_pred HhhhhCcHHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc----------------CChhh
Q 006877 461 AIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD----------------AGGGM 523 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~----------------~~~~~ 523 (627)
.|.+.|+||+|+++|. +++.++++.|+.+|+||+.+++++..+++. ++++|++++.. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999998875 69999987631 25578
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHhhC-CChHHHHHHHhcC------CHHHHHHHHHHHHHHhcC
Q 006877 524 VDEALAILAILAS-HQEGKTAIGQA-EPIPVLMEVIRTG------SPRNRENAAAVLWAICTG 578 (627)
Q Consensus 524 ~~~Al~~L~~L~~-~~~~~~~i~~~-g~v~~Lv~lL~~~------~~~~~~~A~~~L~~L~~~ 578 (627)
.+.|.++|.||+. ++++|..|.+. |+|+.|+.+++.+ +...+|+|+.+|.||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999998 57999999986 6689999999863 467899999999999975
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.8e-22 Score=222.52 Aligned_cols=280 Identities=15% Similarity=0.115 Sum_probs=237.6
Q ss_pred cHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhCh-------------------------------------h-hHHHH
Q 006877 340 DRAAIDALLGKLAN-GNVEEQRAAAGELRLLAKRNA-------------------------------------D-NRVCI 380 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~L~~~~~-------------------------------------~-~r~~i 380 (627)
+.+.++.|+..+++ .+......++..|.+++...+ + ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 55779999999984 666778888888888875221 1 56778
Q ss_pred HhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHH---HHHHHHHHHHHhcCCch
Q 006877 381 AEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSME---ARENAAATLFSLSVIDE 457 (627)
Q Consensus 381 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e---~~~~aa~~L~~Ls~~~~ 457 (627)
.++|+||.|+.+++++++.+|+.|+++|.||+.++++|..+++.|++++|+.+|.+++.. .+..|+.+|.+|....+
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999999999999988654 89999999999987665
Q ss_pred hhHHhhh---hCcHHHHHHHhcc--CCH------------HHHHHHHHHHHHhccCCCc-----hHHHHHc-CChHHHHH
Q 006877 458 NKVAIGA---AGAIPALIRLLCD--GTP------------RGKKDAATAIFNLSIYQGN-----KARAVRA-GIVPPLMR 514 (627)
Q Consensus 458 ~~~~i~~---~g~i~~Lv~lL~~--~~~------------~~~~~a~~aL~nL~~~~~~-----~~~l~~~-g~v~~Lv~ 514 (627)
....+.. .|++++|+++|.. +.. ..+..|+.||.||+..+++ +..+++. |+++.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 5554432 3999999999983 211 2277999999999998743 7778985 99999999
Q ss_pred hhccCChhhHHHHHHHHHHHhcChhhH-HHHhhCC------ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 006877 515 FLKDAGGGMVDEALAILAILASHQEGK-TAIGQAE------PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAR 587 (627)
Q Consensus 515 lL~~~~~~~~~~Al~~L~~L~~~~~~~-~~i~~~g------~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~ 587 (627)
+|.+++..++..|+.++.||+.+++++ ..+.+.+ .++.|+.++++++.++|..|+++|.+++...+..+..+.
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999999999999999999999999875 3554322 378899999999999999999999999988888888888
Q ss_pred Hc-CcHHHHHHhhhc--CChHHHHHHHHHHHHHHh
Q 006877 588 EL-DAEEALKELSES--GTDRAKRKAGSILELLQR 619 (627)
Q Consensus 588 ~~-g~i~~L~~l~~~--~~~~~k~~A~~lL~~l~~ 619 (627)
+. ++++.|+.++++ +++.++..+..++.+|.+
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 76 899999999999 899999999999999986
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=1.5e-21 Score=225.17 Aligned_cols=276 Identities=23% Similarity=0.265 Sum_probs=246.2
Q ss_pred HhHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Ccch
Q 006877 341 RAAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNK 418 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k 418 (627)
.+.++.|++.|.++ +++.+..|+..|++++. ...++..+.+.|+||.|+.+|+++++.++..|+++|.||+.+ +..+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 47899999999865 89999999999999986 567788999999999999999999999999999999999987 5667
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHhhhhCcHHHHHHHhccCCH-HHHHHHHHHHHHhccC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAIFNLSIY 496 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~nL~~~ 496 (627)
..+.+.|+++.|+++|++++.+++..++.+|.+|+.. ++++..+.+.|+++.|+.++++++. .....++.+|.+|+.+
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 7777899999999999999999999999999999864 5788899999999999999998754 4566889999999999
Q ss_pred CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 497 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
+.++..+++.|+++.|+.+|.+.+..++..|+++|.+|+...... ....++++.|+.+|.+.++.+++.|+++|.+|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999988999999999999999865331 122368999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCcHHHHHHhhhc-CC-hHHHHHHHHHHHHHHh
Q 006877 577 TGDAEQLKIARELDAEEALKELSES-GT-DRAKRKAGSILELLQR 619 (627)
Q Consensus 577 ~~~~~~~~~~~~~g~i~~L~~l~~~-~~-~~~k~~A~~lL~~l~~ 619 (627)
.+++..+..+.+.|+++.|+.++.+ ++ +.++..|.++|.+|..
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 9998899999999999999999987 44 4899999999999864
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=1.1e-21 Score=189.47 Aligned_cols=197 Identities=25% Similarity=0.346 Sum_probs=181.2
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhcc-CCcchH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSI-NDSNKG 419 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~-~~~~k~ 419 (627)
.+..+.|+.+|.+.+++++..|++.|.+++..++.++..+.+.|++|.|+++|.++++.++..|+++|.||+. ++.++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3567899999999999999999999999998899999999999999999999999999999999999999996 467788
Q ss_pred HHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC-C
Q 006877 420 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY-Q 497 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~-~ 497 (627)
.+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ ..+..+.+.|+++.|++++.+++..++..|+++|.||+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 8889999999999999999999999999999999655 5567788889999999999999999999999999999987 6
Q ss_pred CchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 006877 498 GNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 537 (627)
Q Consensus 498 ~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~ 537 (627)
+++..+++.|+++.|++++.+++..+++.|+.+|.+|+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 6777888999999999999999999999999999999863
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=1.5e-21 Score=225.21 Aligned_cols=277 Identities=23% Similarity=0.271 Sum_probs=243.7
Q ss_pred ccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCC-cc
Q 006877 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIND-SN 417 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~-~~ 417 (627)
...+.++.|+..+.+.+...+..|++.|.+++...... ....+++|.|+++|.++++.++..|+++|.+|+.++ .+
T Consensus 357 ~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 357 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 35578999999999999999999999999999755321 123478999999999999999999999999998874 67
Q ss_pred hHHHhhcCChHHHHHHHcc-CC-HHHHHHHHHHHHHhcCCch----hhHHhhhhCcHHHHHHHhccCCH-HHHHHHHHHH
Q 006877 418 KGTIVNAGAIPDIVDVLKN-GS-MEARENAAATLFSLSVIDE----NKVAIGAAGAIPALIRLLCDGTP-RGKKDAATAI 490 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~-~~-~e~~~~aa~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL 490 (627)
+..+.+.|+++.|+++|.+ ++ .+++..|+++|.+|+..+. .+..+...|+++.|+++|.+++. .+++.|+++|
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL 513 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence 8888899999999999976 33 5899999999999987542 35577788999999999998764 8999999999
Q ss_pred HHhccCCCchHHHHHcCChHHHHHhhccCC----------------------hhhHHHHHHHHHHHhcChhhHHHHhhCC
Q 006877 491 FNLSIYQGNKARAVRAGIVPPLMRFLKDAG----------------------GGMVDEALAILAILASHQEGKTAIGQAE 548 (627)
Q Consensus 491 ~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~----------------------~~~~~~Al~~L~~L~~~~~~~~~i~~~g 548 (627)
.||+.++.++..+.+.|+++.|+++|.+.+ ..++..++.+|++|+.++.++..+.+.|
T Consensus 514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~ 593 (780)
T 2z6g_A 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN 593 (780)
T ss_dssp HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCC
Confidence 999999889988999999999999996532 3467789999999999999999999999
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+++.|+.+|.++++.++..|+.+|.+|+.. +..+..+.+.|+++.|..++.++++.+++.|.++|..+..
T Consensus 594 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 594 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999864 6788889999999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=3.5e-21 Score=185.93 Aligned_cols=197 Identities=25% Similarity=0.345 Sum_probs=181.3
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcC-CchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc-CCCch
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSV-IDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI-YQGNK 500 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~-~~~~~ 500 (627)
..|..+.|+.+|++++++++..|+++|.+|+. .++++..+.+.|+++.|+++|.++++.++..|+++|.||+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 46789999999999999999999999999994 45788889999999999999999999999999999999996 55677
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 006877 501 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~ 579 (627)
..+++.|+++.|+.+|.++++.++..|+++|+|++. .++.+..+.+.|+++.|+.+++++++.+++.|+++|.+|+..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999997 4666778889999999999999999999999999999999998
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 580 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 580 ~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+.....+.+.|+++.|+.++.++++.+++.|.++|++|.+
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999864
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.5e-19 Score=200.63 Aligned_cols=277 Identities=13% Similarity=0.127 Sum_probs=229.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhc-CCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCc--
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA-GAIPLLVELLSS-TDPRTQEHAVTALLNLSINDS-- 416 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~-- 416 (627)
....+.+++.|.+++.+.+..|++.|.+++. .++.|..+++. |+++.|+.+++. .+..+...++.+|.||+.+.+
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 3478888999988887789999999999997 66677777765 779999999995 788899999999999976321
Q ss_pred -------------------------------------chHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh
Q 006877 417 -------------------------------------NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 459 (627)
Q Consensus 417 -------------------------------------~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~ 459 (627)
++..+.+.|+++.|+.+++++++.+++.|+++|.+||.+..+|
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3445668999999999999999999999999999999999999
Q ss_pred HHhhhhCcHHHHHHHhccCCHH---HHHHHHHHHHHhccCCCchHHHH--H-cCChHHHHHhhcc-CChh----------
Q 006877 460 VAIGAAGAIPALIRLLCDGTPR---GKKDAATAIFNLSIYQGNKARAV--R-AGIVPPLMRFLKD-AGGG---------- 522 (627)
Q Consensus 460 ~~i~~~g~i~~Lv~lL~~~~~~---~~~~a~~aL~nL~~~~~~~~~l~--~-~g~v~~Lv~lL~~-~~~~---------- 522 (627)
..+.+.|++++|+.++.+++.. ++..|+.||.+|+...+....+- . .|+|++|+.+|.. +...
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999988644 89999999999997655443221 1 3899999999972 2211
Q ss_pred --h-HHHHHHHHHHHhcCh-----hhHHHHhhC-CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHc---
Q 006877 523 --M-VDEALAILAILASHQ-----EGKTAIGQA-EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL-KIAREL--- 589 (627)
Q Consensus 523 --~-~~~Al~~L~~L~~~~-----~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~-~~~~~~--- 589 (627)
. +..|+.+|.||+..+ +.|..++.. |+++.|..+|.+++..+|..|++++.||+.+. +.+ ..+.+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~ 650 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFNLENP 650 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCc
Confidence 1 668999999999976 347878886 99999999999999999999999999999855 332 233322
Q ss_pred ---CcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 590 ---DAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 590 ---g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+.++.|+.++..++.++++.|.++|.++..
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 248899999999999999999999999964
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.83 E-value=3.8e-19 Score=180.38 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=189.3
Q ss_pred cHhHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHH
Q 006877 340 DRAAIDALLGKLANG------------NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LLSSTDPRTQEHAVT 406 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~------------~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~ 406 (627)
+...++..+..|.+. +.+.+..|+..|..++. +.++...+...|++|+|+. +|.++++.++..|++
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~ 104 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ 104 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHH
Confidence 344566666666653 24678889999999996 6678888999999999999 999999999999999
Q ss_pred HHHhhccC-CcchHHHhhcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhccCCHHHH
Q 006877 407 ALLNLSIN-DSNKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCDGTPRGK 483 (627)
Q Consensus 407 ~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 483 (627)
+|+|++.+ +..+..+++.|++++|+.+|+++ +..++..|+|+|.+|+... .....+...|+++.|+.+|++++..++
T Consensus 105 ~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~ 184 (296)
T 1xqr_A 105 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK 184 (296)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 99999986 46788888999999999999964 7899999999999998765 456678888999999999999999999
Q ss_pred HHHHHHHHHhccC-CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh-hhHHHHhhC-CChHHH----HHH
Q 006877 484 KDAATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ-EGKTAIGQA-EPIPVL----MEV 556 (627)
Q Consensus 484 ~~a~~aL~nL~~~-~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~-~~~~~i~~~-g~v~~L----v~l 556 (627)
..|+++|.||+.. ++.+..+++.|++++|+.+|.+++..+++.|+.+|.+|+... ......... ..+..+ .+-
T Consensus 185 ~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~ 264 (296)
T 1xqr_A 185 VKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 264 (296)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999875 567788999999999999999999999999999999999873 222222211 112222 223
Q ss_pred HhcC--CHHHHHHHHHHHHHHh
Q 006877 557 IRTG--SPRNRENAAAVLWAIC 576 (627)
Q Consensus 557 L~~~--~~~~~~~A~~~L~~L~ 576 (627)
++.. +.++.+.|..++-++.
T Consensus 265 lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 265 LQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHHc
Confidence 3322 3456677777665554
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.82 E-value=6e-19 Score=178.92 Aligned_cols=221 Identities=21% Similarity=0.163 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHH-HHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHh
Q 006877 398 PRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVD-VLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLL 475 (627)
Q Consensus 398 ~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL 475 (627)
.+-+..|+..|.+++.+.++...+...|++++++. +|++++++++..|+|+|.+++.++ .++..+.+.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45678899999999988788888999999999999 999999999999999999998765 5788888999999999999
Q ss_pred ccC-CHHHHHHHHHHHHHhccCCC-chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHH
Q 006877 476 CDG-TPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPV 552 (627)
Q Consensus 476 ~~~-~~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~ 552 (627)
.++ +..+++.|+++|.||+.+.. ....+++.|+++.|+.+|.+++..++..|+++|.+|+. +++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 964 78899999999999998654 45578889999999999999999999999999999988 5778899999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CcHHHH---HHhhh-cC-ChHHHHHHHHHHHHHH
Q 006877 553 LMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL--DAEEAL---KELSE-SG-TDRAKRKAGSILELLQ 618 (627)
Q Consensus 553 Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~--g~i~~L---~~l~~-~~-~~~~k~~A~~lL~~l~ 618 (627)
|+.+|.++++.+++.|+.+|.+|+...+......... .....| ++-++ +. +....++|..++..+.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999876554443322 121222 23334 33 5778888999998775
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.79 E-value=7.8e-20 Score=148.86 Aligned_cols=76 Identities=33% Similarity=0.461 Sum_probs=70.0
Q ss_pred CCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcCC
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 318 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 318 (627)
....+|++|.||||+++|+|||+++|||+|||.||++|+. ++.+||.|+.++....++||..++++|+.|+.+++.
T Consensus 7 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 3446889999999999999999999999999999999998 468999999999999999999999999999987753
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.78 E-value=1.3e-19 Score=151.91 Aligned_cols=76 Identities=34% Similarity=0.466 Sum_probs=70.8
Q ss_pred CCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcCC
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 318 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 318 (627)
....+|++|.||||+++|+|||+++|||+|||.||++||. ++.+||.|+.++....++||..++++|+.|+.+++.
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 3456899999999999999999999999999999999998 678999999999999999999999999999998764
No 41
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.78 E-value=1.1e-19 Score=167.20 Aligned_cols=76 Identities=34% Similarity=0.516 Sum_probs=71.2
Q ss_pred CCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcCCC
Q 006877 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 319 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 319 (627)
..+|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.++....++||..++++|+.|+..||+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 3678999999999999999999999999999999999975568999999999999999999999999999999874
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.78 E-value=2.5e-19 Score=149.58 Aligned_cols=78 Identities=29% Similarity=0.395 Sum_probs=71.7
Q ss_pred CCCCCCCCCccCCCCcccccCceeccCc-ccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcCCC
Q 006877 241 HRSPVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 319 (627)
Q Consensus 241 ~~~~~~~~~f~Cpic~~~m~dPv~~~cg-~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 319 (627)
.....+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||.|+.++....++||..++++|+.|+..++..
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 3345689999999999999999999999 99999999999984 679999999999999999999999999999988764
No 43
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=1.5e-18 Score=175.77 Aligned_cols=77 Identities=34% Similarity=0.504 Sum_probs=72.1
Q ss_pred CCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcCCC
Q 006877 243 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGVE 319 (627)
Q Consensus 243 ~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~~ 319 (627)
...+|++|.||||+++|.|||+++||||||+.||.+|+..++.+||.|+.+++...++||..++++|+.|+..+++.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 34678999999999999999999999999999999999987777999999999999999999999999999999875
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.74 E-value=2.1e-18 Score=138.64 Aligned_cols=74 Identities=85% Similarity=1.424 Sum_probs=70.3
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcCC
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 318 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 318 (627)
.++++|.||||+++|.+||+++|||+||+.||.+|+..++.+||.|+.++....+.+|..++++|+.|..++++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999999987788999999999988999999999999999998875
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.9e-17 Score=134.24 Aligned_cols=73 Identities=27% Similarity=0.475 Sum_probs=64.7
Q ss_pred CCCCccCCCCcccccCceecc-CcccccHHHHHHHHHhC-----CCCCCC--cccc-ccCCCCCccHHHHhhhHHHHhhc
Q 006877 246 IPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAG-----HKTCPK--TQQT-LLHTALTPNYVLKSLIALWCENN 316 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~-cg~t~~r~ci~~~~~~~-----~~~CP~--~~~~-l~~~~l~~n~~l~~~i~~~~~~~ 316 (627)
.+++|.||||+++|.|||+++ |||+||+.||.+||..+ ..+||. |+.. +....++||..++.+|+.|...+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 468999999999999999996 99999999999999853 468999 6555 88889999999999999999876
Q ss_pred CC
Q 006877 317 GV 318 (627)
Q Consensus 317 ~~ 318 (627)
+.
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=123.14 Aligned_cols=76 Identities=29% Similarity=0.531 Sum_probs=67.6
Q ss_pred CCCCCCCccCCCCcccccCceecc-CcccccHHHHHHHHHh-CCCCCCCccccc-cCCCCCccHHHHhhhHHHHhhcCC
Q 006877 243 SPVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDA-GHKTCPKTQQTL-LHTALTPNYVLKSLIALWCENNGV 318 (627)
Q Consensus 243 ~~~~~~~f~Cpic~~~m~dPv~~~-cg~t~~r~ci~~~~~~-~~~~CP~~~~~l-~~~~l~~n~~l~~~i~~~~~~~~~ 318 (627)
...+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|+..+ ....+.+|..++++++.|...++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~ 85 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY 85 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence 346788999999999999999999 9999999999999975 447899999997 566899999999999999887654
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.56 E-value=3.6e-13 Score=146.07 Aligned_cols=276 Identities=16% Similarity=0.203 Sum_probs=221.5
Q ss_pred cHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccC-C
Q 006877 340 DRAAIDALLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSIN-D 415 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~-~ 415 (627)
..++|+.|...+.+.. .+.++.|+..|+.+++. ++..+. .++++.|+..|+.+ |.++...++.+|.++-.. +
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 3569999999998654 88999999999999864 444444 57799999999874 888999999999987442 2
Q ss_pred c-----------------chHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hhHHhhhh-CcHHHHHHH
Q 006877 416 S-----------------NKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGAA-GAIPALIRL 474 (627)
Q Consensus 416 ~-----------------~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~--~~~~i~~~-g~i~~Lv~l 474 (627)
. +.+.+. +.+.|+.|+.+|++.+..++.+++.+|..|+.... ++..|... ++++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 112233 57889999999999999999999999999986653 67778865 999999999
Q ss_pred hccCCHHHHHHHHHHHHHhccCCCchHHHHH-cCChHHHHHhhccCC----hhhHHHHHHHHHHHhcC-hhhHHHHhhCC
Q 006877 475 LCDGTPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAG----GGMVDEALAILAILASH-QEGKTAIGQAE 548 (627)
Q Consensus 475 L~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~-~g~v~~Lv~lL~~~~----~~~~~~Al~~L~~L~~~-~~~~~~i~~~g 548 (627)
|.+....++..++..|.+|+.+..+..+++. .|+++.|+.++..+. ..++..|+.+|.||... +.++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9999999999999999999998887777665 699999999997743 36789999999999994 66899999999
Q ss_pred ChHHHHHHHhcCCH-------H--HHHHHHHHHHHHhcC------CHHHHHHHHHcCcHHHHHHhhhcC--ChHHHHHHH
Q 006877 549 PIPVLMEVIRTGSP-------R--NRENAAAVLWAICTG------DAEQLKIARELDAEEALKELSESG--TDRAKRKAG 611 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~-------~--~~~~A~~~L~~L~~~------~~~~~~~~~~~g~i~~L~~l~~~~--~~~~k~~A~ 611 (627)
+++.|..++..+.+ + ....+..++.-|+.. .+.+...+.+.|+++.|++++... ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999975432 1 122366677777775 335778889999999999998765 566788888
Q ss_pred HHHHHHHh
Q 006877 612 SILELLQR 619 (627)
Q Consensus 612 ~lL~~l~~ 619 (627)
.++..+.+
T Consensus 335 ~tla~~ir 342 (651)
T 3grl_A 335 NTVSEVIR 342 (651)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88777654
No 48
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.4e-13 Score=132.20 Aligned_cols=71 Identities=17% Similarity=0.356 Sum_probs=63.9
Q ss_pred CCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHh-CCCCCCC--ccccccCCCCCccHHHHhhhHHHHhh
Q 006877 245 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDA-GHKTCPK--TQQTLLHTALTPNYVLKSLIALWCEN 315 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l~~~i~~~~~~ 315 (627)
....+|.||||+++|+|||+. .|||+|||.||.+||.. +..+||. |++.+....++||..++++++.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 356889999999999999985 99999999999999985 3468999 99999999999999999999998663
No 49
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.46 E-value=6.6e-12 Score=136.22 Aligned_cols=279 Identities=14% Similarity=0.109 Sum_probs=219.4
Q ss_pred cHhHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChh-----------------hH-HHHHhcCCHHHHHHHhcCCCHH
Q 006877 340 DRAAIDALLGKLANG--NVEEQRAAAGELRLLAKRNAD-----------------NR-VCIAEAGAIPLLVELLSSTDPR 399 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~-----------------~r-~~i~~~g~i~~Lv~lL~~~~~~ 399 (627)
...+++.|+..|+.. |.+....++..|.++...+.. +. ..+.+.+.|+.|+.+|.+.+..
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~ 137 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH 137 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHH
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHH
Confidence 356788999999764 678888888888776643321 11 2234568899999999999999
Q ss_pred HHHHHHHHHHhhccCC--cchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh-CcHHHHHHHh
Q 006877 400 TQEHAVTALLNLSIND--SNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLL 475 (627)
Q Consensus 400 ~~~~A~~~L~nLs~~~--~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL 475 (627)
+|..++.+|..|+.+. .+++.|. .+++++.|+.+|++..+.+|..++.+|.+|+..+....+++.. |+++.|++++
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998763 3677788 5799999999999999999999999999999988776666666 9999999999
Q ss_pred ccCC----HHHHHHHHHHHHHhccCC-CchHHHHHcCChHHHHHhhccCChh------hHH---HHHHHHHHHhcC----
Q 006877 476 CDGT----PRGKKDAATAIFNLSIYQ-GNKARAVRAGIVPPLMRFLKDAGGG------MVD---EALAILAILASH---- 537 (627)
Q Consensus 476 ~~~~----~~~~~~a~~aL~nL~~~~-~~~~~l~~~g~v~~Lv~lL~~~~~~------~~~---~Al~~L~~L~~~---- 537 (627)
.... ..+..+++.+|.||..+. .|+..+.+.|+++.|..+|..++.. ... .++.++..|+..
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8743 366889999999999864 4888899999999999999753321 223 367777777764
Q ss_pred ---hhhHHHHhhCCChHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---------cHHHHHHhhhcC-
Q 006877 538 ---QEGKTAIGQAEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDAEQLKIARELD---------AEEALKELSESG- 602 (627)
Q Consensus 538 ---~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g---------~i~~L~~l~~~~- 602 (627)
..++..+.+.|++..|++++.+. ...++..|..++..+.++++.....+.+.. ++..|+.++.+.
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 23577889999999999999864 477999999999999999998888887643 344444445443
Q ss_pred ChHHHHHHHHHHHHHH
Q 006877 603 TDRAKRKAGSILELLQ 618 (627)
Q Consensus 603 ~~~~k~~A~~lL~~l~ 618 (627)
....|-.|..+++.+-
T Consensus 378 ~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFL 393 (651)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5777888888888764
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.46 E-value=4.2e-14 Score=124.20 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=63.5
Q ss_pred CCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccC-CCCCccHHHHhhhHHHHhh
Q 006877 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH-TALTPNYVLKSLIALWCEN 315 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~i~~~~~~ 315 (627)
+++++.||||++.+.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++.+++.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 346789999999999999999999999999999999666799999999987 7799999999999998654
No 51
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.43 E-value=2.5e-14 Score=107.77 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=49.7
Q ss_pred CccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHH
Q 006877 249 DFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYV 304 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~ 304 (627)
.|.||||+++|.|||++ +|||+|||.||++|+.. +.+||+|++++...+++||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 99999999999999985 456999999999999988753
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=8.6e-14 Score=125.89 Aligned_cols=69 Identities=25% Similarity=0.491 Sum_probs=63.5
Q ss_pred CCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCC-CCCccHHHHhhhHHHHh
Q 006877 246 IPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT-ALTPNYVLKSLIALWCE 314 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~-~l~~n~~l~~~i~~~~~ 314 (627)
+++++.||||++.+.+||+++|||+||+.||.+|+..+...||.|+..+... .+.+|..++++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999997777999999999877 89999999999998864
No 53
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.39 E-value=1.6e-13 Score=154.06 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=69.2
Q ss_pred CCCCCCccCCCCcccccCceeccCc-ccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhcCC
Q 006877 244 PVIPDDFRCPISLELMKDPVIVSTG-QTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENNGV 318 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dPv~~~cg-~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~~~ 318 (627)
.++|++|.|||++++|+|||++++| +||+|.+|++|+.. +.+||.|++++.+..++||+.+|..|++||.+++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999998 69999999999985 67999999999999999999999999999998764
No 54
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=2.7e-13 Score=110.51 Aligned_cols=69 Identities=26% Similarity=0.572 Sum_probs=60.3
Q ss_pred CCCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhC-----CCCCCCccccccCCCCCccHHHHhhh
Q 006877 241 HRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG-----HKTCPKTQQTLLHTALTPNYVLKSLI 309 (627)
Q Consensus 241 ~~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~-----~~~CP~~~~~l~~~~l~~n~~l~~~i 309 (627)
.....+.+++.||||.+.+.+|++++|||+||+.||.+|+... ...||.|+..+....+.+|..+++++
T Consensus 11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 3445677899999999999999999999999999999999862 67899999999988888988777654
No 55
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.35 E-value=8e-14 Score=112.03 Aligned_cols=66 Identities=24% Similarity=0.527 Sum_probs=58.4
Q ss_pred CCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhC------CCCCCCccccccCCCCCccHHHHhhh
Q 006877 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG------HKTCPKTQQTLLHTALTPNYVLKSLI 309 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~------~~~CP~~~~~l~~~~l~~n~~l~~~i 309 (627)
..+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+..+....+.+|..+++++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 3567899999999999999999999999999999999852 67899999999988888888776654
No 56
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.5e-13 Score=112.58 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=63.6
Q ss_pred CCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhhc
Q 006877 246 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCENN 316 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 316 (627)
+++++.||||.+.+.+|+++ +|||+||+.||.+|+. .+.+||.|+..+....+.+|..++++++.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 45678999999999999998 8999999999999998 5678999999999888999999999999997654
No 57
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.6e-13 Score=109.12 Aligned_cols=68 Identities=21% Similarity=0.548 Sum_probs=60.0
Q ss_pred CCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHh-----CCCCCCCccccccCCCCCccHHHHhhh
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA-----GHKTCPKTQQTLLHTALTPNYVLKSLI 309 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~~i 309 (627)
....+.+++.||||.+.+.+|++++|||+||+.||.+|+.. +...||.|+..+....+.+|..+++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 34567789999999999999999999999999999999986 367899999999988899998777654
No 58
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=4.5e-13 Score=112.63 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=61.5
Q ss_pred CCCCccCCCCcccccCcee-ccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHh
Q 006877 246 IPDDFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 314 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 314 (627)
+.+++.||||++.+.+||+ ++|||+||+.||.+|+......||.||.++....+.+|..+..+++..-.
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 4578999999999999999 89999999999999999766799999999998889999888887766544
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.33 E-value=4.6e-11 Score=120.22 Aligned_cols=226 Identities=16% Similarity=0.092 Sum_probs=167.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..++.|+..|.+.++.++..|++.|..+.. .+.++.|+.+|.++++.++..|+++|..+...+....
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~-- 89 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-- 89 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch--
Confidence 468899999999999999999999988752 2468899999999999999999999999864322111
Q ss_pred hhcCChHHHH-HHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCch
Q 006877 422 VNAGAIPDIV-DVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 500 (627)
Q Consensus 422 ~~~g~i~~Lv-~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 500 (627)
..++.+. .++.++++.++..++++|..+..... .....+++.|+.++.++++.++..|+.+|.++..
T Consensus 90 ---~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 90 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----- 157 (280)
T ss_dssp ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred ---HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence 1223333 23567789999999999998853221 0122568889999999999999999999988753
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 501 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
.++++.|+.++.++++.++..|+.+|+.+.... ..+++.|+.++.++++.+|..|+.+|..+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence 358899999999888889999999998875321 1356788888888888899999998888762
Q ss_pred HHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 581 EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 581 ~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
..+++.|+.++.+++ ++..|..+|..+.
T Consensus 222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 222 --------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp --------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred --------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 245666666665543 5555666665553
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.5e-13 Score=106.16 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=53.3
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhh
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLI 309 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i 309 (627)
...+.+.||||++.+.+||+++|||+||+.||.+|+. ....||.|+.++. ..+.+|..+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC-SCCEECHHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc-ccCCcHHHHHHHH
Confidence 4567899999999999999999999999999999998 4678999999986 5577776554443
No 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.33 E-value=7.4e-13 Score=115.02 Aligned_cols=71 Identities=25% Similarity=0.527 Sum_probs=64.3
Q ss_pred CCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHH
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 312 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 312 (627)
....+++++.||||++.+.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..++..|..+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 44567889999999999999999999999999999999997767999999999988888999998888765
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.32 E-value=7.5e-11 Score=113.30 Aligned_cols=191 Identities=23% Similarity=0.227 Sum_probs=161.3
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
+...++.|+..|.+.++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 35689999999999999999999999987753 367899999999999999999999998874
Q ss_pred HHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc
Q 006877 420 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 499 (627)
..++++.|+..|.++++.++..|+.+|..+.. .++++.|+.++.++++.++..|+.+|.++..
T Consensus 79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 24578999999999999999999999998743 3588999999999999999999999999853
Q ss_pred hHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 006877 500 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~ 579 (627)
...++.|..++.++++.++..|+.+|..+.. ..+++.|..+++++++.+|..|..+|..+..+.
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3578999999999999999999999999853 246788999999999999999999999988766
Q ss_pred HH
Q 006877 580 AE 581 (627)
Q Consensus 580 ~~ 581 (627)
+.
T Consensus 206 ~~ 207 (211)
T 3ltm_A 206 HH 207 (211)
T ss_dssp --
T ss_pred CC
Confidence 43
No 63
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=100.83 Aligned_cols=56 Identities=16% Similarity=0.453 Sum_probs=49.7
Q ss_pred CCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCC
Q 006877 243 SPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 298 (627)
Q Consensus 243 ~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 298 (627)
...+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.|+.++....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34567899999999999999999999999999999999767788999999886554
No 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.32 E-value=2.5e-13 Score=117.50 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=61.9
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccC-------CCCCccHHHHhhhHHHHh
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH-------TALTPNYVLKSLIALWCE 314 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~-------~~l~~n~~l~~~i~~~~~ 314 (627)
...+++.||||++.+.+||+++|||+||+.||.+|+..+...||.|+..+.. ..+.+|..+...|..|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 4557899999999999999999999999999999998778899999998863 567789999999988854
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.32 E-value=8.8e-11 Score=112.83 Aligned_cols=188 Identities=22% Similarity=0.233 Sum_probs=160.9
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHh
Q 006877 383 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 462 (627)
Q Consensus 383 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 462 (627)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|++.|.++++.++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 4679999999999999999999999987642 4678999999999999999999999988742
Q ss_pred hhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHH
Q 006877 463 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKT 542 (627)
Q Consensus 463 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~ 542 (627)
.++++.|+.+|.++++.++..|+.+|.++.. .+.++.|+.+|.++++.++..|+.+|+.+..
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 3588999999999999999999999999864 3578999999999999999999999998853
Q ss_pred HHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhHH
Q 006877 543 AIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 543 ~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~~ 621 (627)
...++.|..++.++++.++..|+.+|..+.. ..+++.|..+++++++.++..|..+|..+....
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 2478999999998999999999999999853 236778999999999999999999999887543
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.31 E-value=2.1e-12 Score=102.05 Aligned_cols=53 Identities=32% Similarity=0.656 Sum_probs=46.9
Q ss_pred CCCCCCCccCCCCcccccCceecc-CcccccHHHHHHHHHhC-CCCCCCcccccc
Q 006877 243 SPVIPDDFRCPISLELMKDPVIVS-TGQTYERSCIQKWLDAG-HKTCPKTQQTLL 295 (627)
Q Consensus 243 ~~~~~~~f~Cpic~~~m~dPv~~~-cg~t~~r~ci~~~~~~~-~~~CP~~~~~l~ 295 (627)
...+++++.||||++.|.+||+++ |||+||+.||.+|+... ...||.|+.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 446788999999999999999999 99999999999999854 368999998754
No 67
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.31 E-value=9.2e-13 Score=112.55 Aligned_cols=69 Identities=14% Similarity=0.368 Sum_probs=60.6
Q ss_pred CCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccCC----CCCccHHHHhhhHHHHh
Q 006877 245 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT----ALTPNYVLKSLIALWCE 314 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~i~~~~~ 314 (627)
.+++++.||||.+.+.+||++ +|||+||+.||.+|+.. +..||.|+..+... .+.+|..+.++++.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 356789999999999999997 99999999999999984 58899999998865 67899999999887744
No 68
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=100.61 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=51.7
Q ss_pred CCCCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccCCCCCcc
Q 006877 243 SPVIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 243 ~~~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 302 (627)
...+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|+..+....+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 34577899999999999999997 99999999999999984 6789999999987766654
No 69
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.29 E-value=1.9e-10 Score=109.53 Aligned_cols=187 Identities=23% Similarity=0.223 Sum_probs=161.7
Q ss_pred ccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcch
Q 006877 339 CDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK 418 (627)
Q Consensus 339 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k 418 (627)
...+..+.+++.|.+.++.++..|+..|..+.. .+.++.|+++|.++++.++..|+.+|..+..
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 345788999999999999999999999987753 3578999999999999999999999988742
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 498 (627)
.++++.|+..|.+.++.++..|+++|..+.. ..+++.|+.++.++++.++..|+.+|.++..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 3578999999999999999999999988743 3588999999999999999999999999853
Q ss_pred chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 499 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 499 ~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
.+.++.|..++.++++.++..|+.+|..+.. ..+++.|..++.++++.++..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999998832 236888999999999999999999997754
No 70
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.27 E-value=2.2e-10 Score=109.10 Aligned_cols=185 Identities=23% Similarity=0.236 Sum_probs=160.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhh
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG 463 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~ 463 (627)
+..+.++++|.++++.+|..|+.+|..+.. .+.++.|++.|.++++.++..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 567899999999999999999999987752 3578999999999999999999999987742
Q ss_pred hhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHH
Q 006877 464 AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTA 543 (627)
Q Consensus 464 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~ 543 (627)
..+++.|+.+|.++++.++..|+.+|.++.. ..+++.|+.+|.++++.++..|+.+|+.+..
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 3578999999999999999999999999854 2478999999999999999999999998853
Q ss_pred HhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 544 IGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 544 i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
...++.|..++.+.++.++..|+.+|..+.. + .+++.|..++.++++.++..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999832 2 367888899999999999999999988753
No 71
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.26 E-value=1.7e-12 Score=119.92 Aligned_cols=70 Identities=24% Similarity=0.551 Sum_probs=62.1
Q ss_pred CCCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCcccccc-CCCCCccHHHHhhhHHHHh
Q 006877 245 VIPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLL-HTALTPNYVLKSLIALWCE 314 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~-~~~l~~n~~l~~~i~~~~~ 314 (627)
.+.+++.||||++.+.+||++ +|||+||+.||.+|+..++..||.|+.++. ...+.+|..+..+|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 456788999999999999997 999999999999999977889999999985 4568899999999998854
No 72
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.25 E-value=2.3e-12 Score=115.22 Aligned_cols=64 Identities=20% Similarity=0.496 Sum_probs=52.1
Q ss_pred CCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHh
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCE 314 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 314 (627)
+++.||||++.|.+||+++|||+||+.||.+|+. .+.+||.||.++... .+|..+...+..+..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSK--TYSLVLDNCINKMVN 115 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE--EECHHHHHHHHHHHT
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC--CCccchhHHHHHHHH
Confidence 5688999999999999999999999999999998 567899999988644 245555555555543
No 73
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=2e-12 Score=112.04 Aligned_cols=67 Identities=19% Similarity=0.417 Sum_probs=61.0
Q ss_pred CCCCccCCCCcccccCceec-cCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHHHhh
Q 006877 246 IPDDFRCPISLELMKDPVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCEN 315 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~ 315 (627)
+.+++.||||.+++.+||++ +|||+||+.||.+|+. ..||.|+.++....+.+|..++.++..+...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 34689999999999999999 9999999999999986 7899999999888899999999999887553
No 74
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.6e-12 Score=98.67 Aligned_cols=58 Identities=22% Similarity=0.581 Sum_probs=49.9
Q ss_pred CCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHh--CCCCCCCccccccCCCC
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKTQQTLLHTAL 299 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~--~~~~CP~~~~~l~~~~l 299 (627)
....+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+..+....+
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34467789999999999999999999999999999999973 56789999998875543
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.5e-11 Score=93.82 Aligned_cols=49 Identities=24% Similarity=0.627 Sum_probs=43.5
Q ss_pred CCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHh--CCCCCCCc
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKT 290 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~--~~~~CP~~ 290 (627)
....+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34467789999999999999999999999999999999985 45689987
No 76
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=9.4e-12 Score=107.08 Aligned_cols=67 Identities=24% Similarity=0.500 Sum_probs=58.0
Q ss_pred CCccCCCCcccccCceeccCcccccHHHHHHHHHhC--CCCCCCccccccCCCCCccHHHHhhhHHHHh
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAG--HKTCPKTQQTLLHTALTPNYVLKSLIALWCE 314 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~--~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~ 314 (627)
+.+.||||.+.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.+|..+..+++.+..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 567899999999999999999999999999999853 3589999999998888888777777766543
No 77
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=1.1e-11 Score=95.22 Aligned_cols=55 Identities=24% Similarity=0.492 Sum_probs=48.7
Q ss_pred CCccCCCCcc-cccCc----eeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCcc
Q 006877 248 DDFRCPISLE-LMKDP----VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 248 ~~f~Cpic~~-~m~dP----v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 302 (627)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|+.++....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5689999999999999998777889999999987777654
No 78
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.18 E-value=7.2e-12 Score=108.47 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=57.4
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCC-ccHHHHhhhHHH
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT-PNYVLKSLIALW 312 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~i~~~ 312 (627)
.+.+++.||||.+.+.+||+++|||+||+.||.+|+..++.+||.|+.++....+. ++..+..++..+
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 45578999999999999999999999999999999997678899999999876654 456666666543
No 79
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.18 E-value=1.4e-09 Score=109.23 Aligned_cols=202 Identities=12% Similarity=0.067 Sum_probs=160.4
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh
Q 006877 380 IAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 459 (627)
Q Consensus 380 i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~ 459 (627)
+...+.++.|+..|.++++.+|..|+++|.++. ..+.++.|+.+|.++++.++..|+++|..+...+...
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 345678999999999999999999999999886 2356899999999999999999999999886433211
Q ss_pred HHhhhhCcHHHHHH-HhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh
Q 006877 460 VAIGAAGAIPALIR-LLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 538 (627)
Q Consensus 460 ~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~ 538 (627)
. ..++.|.. ++.++++.++..++++|.++....... ...+++.|+.++.++++.++..|+.+|+++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 1 12334442 456678999999999999997432111 22468899999999999999999999987653
Q ss_pred hhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 539 EGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 539 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
.++++.|+.++.++++.++..|+.+|..+....+ .+++.|..++.++++.++..|.+.|..+.
T Consensus 158 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 --------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999865554 35678889999999999999999998876
Q ss_pred h
Q 006877 619 R 619 (627)
Q Consensus 619 ~ 619 (627)
.
T Consensus 221 ~ 221 (280)
T 1oyz_A 221 D 221 (280)
T ss_dssp C
T ss_pred C
Confidence 3
No 80
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.18 E-value=9.7e-12 Score=115.46 Aligned_cols=71 Identities=25% Similarity=0.527 Sum_probs=63.8
Q ss_pred CCCCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCccHHHHhhhHHH
Q 006877 242 RSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALW 312 (627)
Q Consensus 242 ~~~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~ 312 (627)
....++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..+.+.|.++
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 34578899999999999999999999999999999999987777999999999988888998888888764
No 81
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.17 E-value=3.9e-12 Score=113.66 Aligned_cols=68 Identities=13% Similarity=0.379 Sum_probs=57.2
Q ss_pred CCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc---------CCCCCccHHHHhhhHH
Q 006877 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL---------HTALTPNYVLKSLIAL 311 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~---------~~~l~~n~~l~~~i~~ 311 (627)
..++++|.||||.+++.+||+++|||+||+.||.+|+..+...||.|+.++. ...+.++..+++.|.+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 4678899999999999999999999999999999999877779999998753 2235577777777754
No 82
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.14 E-value=6.1e-10 Score=129.98 Aligned_cols=274 Identities=15% Similarity=0.137 Sum_probs=199.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHH--H--HhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVC--I--AEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~--i--~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~ 417 (627)
+.++.|+..+.++++..+..++..|..++.+.+..... + .-.+.+|.|+++++++++.+|..|+++|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 37899999999999999999999999998754432110 0 0124678888888999999999999999988654322
Q ss_pred hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 418 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
...-.-.+.++.+...+.+++++++..++++|..++........-.-.+.++.++..+.+.++.++..|+.++.+++...
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 11111235678888888899999999999999999764422111111257888888888888999999999999998765
Q ss_pred CchHHHHH---cCChHHHHHhh-----------cc-----------CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHH
Q 006877 498 GNKARAVR---AGIVPPLMRFL-----------KD-----------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPV 552 (627)
Q Consensus 498 ~~~~~l~~---~g~v~~Lv~lL-----------~~-----------~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~ 552 (627)
..+. .+. ..+++.++..+ .+ .+..++..|..+|..++..... .+.. ..++.
T Consensus 288 ~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~ 363 (852)
T 4fdd_A 288 ICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPL 363 (852)
T ss_dssp THHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHH
Confidence 3332 222 24566676666 22 1234577788888888864321 2222 35777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 553 LMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 553 Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
+..++.+.++..|+.|+.+|.+++.+.++.... .-.++++.|+.++.+.+++++..|.++|..+.+.
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 788888888999999999999999988754332 2246789999999999999999999999988764
No 83
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.13 E-value=1.9e-11 Score=95.78 Aligned_cols=57 Identities=21% Similarity=0.484 Sum_probs=50.0
Q ss_pred CCCCCccCCCCcccccCc-------eeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCcc
Q 006877 245 VIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 302 (627)
...+++.||||++.+.+| ++++|||+||+.||.+|+.. +.+||.||..+....+.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence 345789999999999998 88999999999999999984 4689999999988777665
No 84
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.12 E-value=2.8e-10 Score=132.78 Aligned_cols=276 Identities=14% Similarity=0.056 Sum_probs=196.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
...++.++..+.+.+++++..|++.|..+....+.... -.-.++++.|+.++.++++.++..|+++|..++......-.
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~-~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM-LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHH-TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 34677888888888999999999999887754332110 00125688899999999999999999999999864321110
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhc-----------c----------
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLC-----------D---------- 477 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~-----------~---------- 477 (627)
-.-.+.++.++..+++.+++++..|+.++..++.....+..+... ..+|.++..+. +
T Consensus 252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 011246788888888889999999999999998765443322221 56677777762 2
Q ss_pred -CCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHH
Q 006877 478 -GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEV 556 (627)
Q Consensus 478 -~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~l 556 (627)
.+..+++.|+.+|..|+...+. .++ ..+++.+.+++.++++.+++.|+.+|++++........-.-.+.++.++..
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~ 408 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQC 408 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 1123477888888888764321 111 236777888888888999999999999999865432111123578999999
Q ss_pred HhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 557 IRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 557 L~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
+.+.++.+|..|+++|.+++...+.......-.++++.|+..+.+.+++++..|.++|..+.+.
T Consensus 409 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 409 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 9989999999999999998874332111111235788888888889999999999999988753
No 85
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.2e-11 Score=89.17 Aligned_cols=47 Identities=28% Similarity=0.764 Sum_probs=42.1
Q ss_pred CCCCCCccCCCCcccccCceeccCcccccHHHHHHHHHh--CCCCCCCc
Q 006877 244 PVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDA--GHKTCPKT 290 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~--~~~~CP~~ 290 (627)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 456788999999999999999999999999999999864 56789987
No 86
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=95.49 Aligned_cols=55 Identities=25% Similarity=0.535 Sum_probs=48.2
Q ss_pred CCCCCCCccCCCCcccccC----ceeccCcccccHHHHHHHHHhC--CCCCCCccccccCC
Q 006877 243 SPVIPDDFRCPISLELMKD----PVIVSTGQTYERSCIQKWLDAG--HKTCPKTQQTLLHT 297 (627)
Q Consensus 243 ~~~~~~~f~Cpic~~~m~d----Pv~~~cg~t~~r~ci~~~~~~~--~~~CP~~~~~l~~~ 297 (627)
...+.+.+.||||.+.+.+ |++++|||+||+.||.+|+... ...||.|+..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3456788999999999999 9999999999999999999864 57899999987654
No 87
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5e-11 Score=93.30 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
...+++.||||++.+.+|++++|||+||+.||.+|+. .+..||.|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence 3457889999999999999999999999999999998 45789999988753
No 88
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=90.94 Aligned_cols=52 Identities=21% Similarity=0.490 Sum_probs=45.8
Q ss_pred CCCCCCccCCCCcccccCc-------eeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 244 PVIPDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
..+.+.+.||||++.+.+| ++++|||+||..||.+|+.. +.+||.|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3567889999999999988 88999999999999999985 6789999988753
No 89
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.01 E-value=2.6e-10 Score=90.37 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=46.8
Q ss_pred CCCCCCccCCCCcccc--cCceecc--CcccccHHHHHHHHHhCCCCCCCccccccCCCC
Q 006877 244 PVIPDDFRCPISLELM--KDPVIVS--TGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 299 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m--~dPv~~~--cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 299 (627)
..+.+++.||||++.+ .|+++.+ |||+||+.|+.+|+..+...||.||+++....+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3467889999999988 4666665 999999999999997777899999998876543
No 90
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.01 E-value=9.8e-11 Score=89.57 Aligned_cols=54 Identities=22% Similarity=0.516 Sum_probs=47.2
Q ss_pred CCccCCCCcccccCc-------eeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCcc
Q 006877 248 DDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 248 ~~f~Cpic~~~m~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 302 (627)
+++.||||++.+.+| +.++|||+||+.||.+|+.. +.+||.|+.++....+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468899999999988 78899999999999999985 6789999999887766554
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.00 E-value=3.1e-10 Score=90.54 Aligned_cols=57 Identities=23% Similarity=0.518 Sum_probs=47.8
Q ss_pred CCCCCccCCCCcccccCc---eeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCcc
Q 006877 245 VIPDDFRCPISLELMKDP---VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dP---v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 302 (627)
...+++.||||++.+.+| +.++|||+||+.||.+|+. .+.+||.||..+....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCcccCCC
Confidence 456788999999999876 3469999999999999997 55789999999887766554
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.95 E-value=2.4e-08 Score=110.76 Aligned_cols=227 Identities=16% Similarity=0.171 Sum_probs=165.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..++.+...+.+.++.++..|+..|..++...... ......+|.|..++.++++.+|..|+.+|..++..-... .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 45667777778889999999999999998643321 223567899999999999999999999999987542211 1
Q ss_pred hhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc--
Q 006877 422 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN-- 499 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~-- 499 (627)
.....++.+..++.+.++.+|..++.+|..++..-.. .......++.++.++.++++.++..|+.+|..++..-..
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2244688888888888999999999999988653211 122346789999999999999999999999999864332
Q ss_pred hHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 500 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
+.......++|.+..++.+.++.++..++.+|..++..-... .. ....+|.+..++.+.++.+|..|+..|..++.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD-NT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH-HH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh-HH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 222334567788888888888888888888888776532111 11 12356777777777777788777777766654
No 93
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.95 E-value=4.4e-09 Score=112.99 Aligned_cols=273 Identities=15% Similarity=0.103 Sum_probs=189.3
Q ss_pred hHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccCCc
Q 006877 342 AAIDALLGKLANG--NVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 342 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~~~ 416 (627)
+.++.|+..+.++ ++..+..|+..|..++.+. ...-.... ...++.++.+|.++ ++.+|..|+.++.++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3789999999988 8999999999999998753 21111111 24678899999887 79999999999998753211
Q ss_pred -ch-HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh--hHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 006877 417 -NK-GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN--KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 492 (627)
Q Consensus 417 -~k-~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 492 (627)
+- ......-.++.+.+.+.+++++++..++.+|..+...... ...+. .+.++.++..+.+.++.++..|+..+.+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 00 0011111355566666777899999999999988754321 11111 1667778888888889999999999988
Q ss_pred hccCCC------------------chHHHHH---cCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHHH
Q 006877 493 LSIYQG------------------NKARAVR---AGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAI 544 (627)
Q Consensus 493 L~~~~~------------------~~~~l~~---~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~L~~~~~~~~~i 544 (627)
++.... ....+++ ..++|.+++.+.. .+..++..|..+|..++..-.. .+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HH
Confidence 875420 0111111 3456777777743 2346778889999888874321 22
Q ss_pred hhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 545 GQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 545 ~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
. ...++.+...+.+.+...|+.|+.+|..++.+.. +..... -..+++.|+..+.+.+++++..|.++|..+.+.
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2 1356777778888889999999999999997543 111111 146899999999999999999999999999764
No 94
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.93 E-value=8.8e-09 Score=114.31 Aligned_cols=263 Identities=14% Similarity=0.088 Sum_probs=197.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..++.+...+.+.++.++..+++.|..++..-.. . ......+|.+..+++++++.+|..++.+|..+...-.. ..
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~- 398 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ- 398 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH-
Confidence 4677777888888999999999999888753211 1 12235789999999999999999999988887643211 11
Q ss_pred hhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH
Q 006877 422 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA 501 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~ 501 (627)
.....++.+..++.+.++.++..++.+|..++..-.. .......++.++.++.+++..++..|+.++..++..-+..
T Consensus 399 ~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~- 475 (588)
T 1b3u_A 399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE- 475 (588)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch-
Confidence 1245678888889888999999999999888642111 1122346788999999888999999999999998643322
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 502 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
.....++|.|..++.+++..++..++.++..++..-... . .....++.|+.++.+.++.+|..++.+|..++..-+.
T Consensus 476 -~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 476 -WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-I-TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp -HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-H-HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred -hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-H-HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 223567888888888888889999999999998743221 1 2235789999999988999999999999999975332
Q ss_pred HHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 582 QLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 582 ~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
. .....+++.|..+..+.+++++..|..+|..+.
T Consensus 553 ~---~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 553 S---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp H---HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred h---hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 1 223457778888888889999999999998765
No 95
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.88 E-value=1.4e-08 Score=115.12 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=153.0
Q ss_pred CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHH-HHhccCCHHHHHHHHHHHHHhccCC--CchH
Q 006877 425 GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALI-RLLCDGTPRGKKDAATAIFNLSIYQ--GNKA 501 (627)
Q Consensus 425 g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~aL~nL~~~~--~~~~ 501 (627)
+.+.++++.|++++++.|..|+++|.+|+.+...+..+...+++.+++ .+|.+.+..++..|+++|.||+... +.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 456778888999999999999999999999888888888888888765 5678889999999999999999754 5667
Q ss_pred HHHHcCChHHHHHhhccCC---------------------hhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhc
Q 006877 502 RAVRAGIVPPLMRFLKDAG---------------------GGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRT 559 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~---------------------~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~ 559 (627)
.+++.|++++|..+|.... ..+.+.++.+|++||. +.+....+...++++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999999885311 1234568889999997 45566778888899999998854
Q ss_pred C---CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcH---HHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 560 G---SPRNRENAAAVLWAICTGDAEQLKIARELDAE---EALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 560 ~---~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i---~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
. ...++..|+.+|+.|+..++.....+.+.|.. ..+..+. .++...+..+..+|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence 2 36799999999999999999988888887643 3333333 344445667788888764
No 96
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.87 E-value=6.9e-08 Score=107.70 Aligned_cols=264 Identities=15% Similarity=0.132 Sum_probs=186.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcch-H
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-G 419 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k-~ 419 (627)
...++.+...+.+.++.++..|+.++..+...+++. +.+.++++.|..+|.++|+.++.+|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 346677889999999999999999999998765542 233578899999999999999999999999998764321 1
Q ss_pred HHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccC---
Q 006877 420 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIY--- 496 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~--- 496 (627)
.-...+.+..|+..+...++..+...+.+|..+...++.. ....++.+..++++.+..++..|++++.++...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 1112345777888888888888888888888776443211 135678888888888899999999999998742
Q ss_pred CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hh------------------hHH-H------HhhCC--
Q 006877 497 QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QE------------------GKT-A------IGQAE-- 548 (627)
Q Consensus 497 ~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~------------------~~~-~------i~~~g-- 548 (627)
.......+-..+.++|+.++ +.++.++..|+..|..++.. ++ .|. . +.+..
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 22222223345667777665 46788888888888887641 11 111 1 11222
Q ss_pred --ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 549 --PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 549 --~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
.++.|..++.+.++..+..++..+..++...+.... ..++.|+.++....+.+...+...++.+
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 344555666677889999999999999988764322 3567777777777777766666656555
No 97
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.2e-09 Score=84.54 Aligned_cols=53 Identities=25% Similarity=0.510 Sum_probs=44.5
Q ss_pred CCCCCCccCCCCcccccCceec---cCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 244 PVIPDDFRCPISLELMKDPVIV---STGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 244 ~~~~~~f~Cpic~~~m~dPv~~---~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
....++..||||++.+.+|..+ +|||.||+.||.+|+.. +.+||.|+.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 3566788999999999877654 99999999999999985 45899999887543
No 98
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=7.5e-10 Score=86.28 Aligned_cols=52 Identities=25% Similarity=0.624 Sum_probs=46.1
Q ss_pred CCCCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCC
Q 006877 245 VIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 298 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 298 (627)
.+.+.+.||||++.+.+ ++++|||+||..||.+|+. ...+||.||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 45678999999999999 8899999999999999998 6788999998886543
No 99
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.86 E-value=1.3e-09 Score=84.38 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=41.6
Q ss_pred CCccCCCCcccccCc-eeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dP-v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
++..||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence 467899999999997 66899999999999999984 578999998875
No 100
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.85 E-value=1.7e-09 Score=79.87 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=41.2
Q ss_pred CCccCCCCcccccC----ceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKD----PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~d----Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
+++.||||++.+.+ |++++|||+||..||.+|+... .+||.|+.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999876 7778999999999999999965 78999998764
No 101
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.85 E-value=1.2e-08 Score=115.73 Aligned_cols=192 Identities=15% Similarity=0.128 Sum_probs=147.2
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHH-HHHccCCHHHHHHHHHHHHHhcCCc--hhhHH
Q 006877 385 AIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIV-DVLKNGSMEARENAAATLFSLSVID--ENKVA 461 (627)
Q Consensus 385 ~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv-~lL~~~~~e~~~~aa~~L~~Ls~~~--~~~~~ 461 (627)
.|.++++.|+++++..|..|+++|.||+.++..+..+...|++..++ .+|.+.+.+++..|+++|.||+... +.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 45567788999999999999999999999888888888999888765 4678889999999999999998664 67788
Q ss_pred hhhhCcHHHHHHHhccCC---------------------HHHHHHHHHHHHHhccCCC-chHHHHHcCChHHHHHhhcc-
Q 006877 462 IGAAGAIPALIRLLCDGT---------------------PRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKD- 518 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~v~~Lv~lL~~- 518 (627)
+...|++++|..++.... .....+++.+|.+||...+ ....+...|+++.|+.+|.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 999999999999986411 1234467889999987544 44567788999999999855
Q ss_pred --CChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChH--HHHHHHhcCCHHHHHHHHHHHHHHh
Q 006877 519 --AGGGMVDEALAILAILASH-QEGKTAIGQAEPIP--VLMEVIRTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 519 --~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~--~Lv~lL~~~~~~~~~~A~~~L~~L~ 576 (627)
....+...|+.+|..|+.. ++....+.+.+... .++..+...+...+..++.+|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 2357889999999999995 45556666655432 2222223344445778889999875
No 102
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.83 E-value=1.9e-09 Score=79.57 Aligned_cols=49 Identities=27% Similarity=0.740 Sum_probs=42.1
Q ss_pred CCCCccCCCCcccccC---ceecc-CcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 246 IPDDFRCPISLELMKD---PVIVS-TGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~d---Pv~~~-cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
+.++..||||++.+.+ ++.++ |||.||..||.+|+. .+.+||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 3467889999999987 77786 999999999999997 4678999998753
No 103
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=4.6e-09 Score=81.49 Aligned_cols=52 Identities=19% Similarity=0.499 Sum_probs=42.8
Q ss_pred CCCCCccCCCCccccc---CceeccCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 245 VIPDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m~---dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
...++..||||++.+. .++.++|||+||..||.+|+.. +.+||.|+..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 3456788999999884 4567899999999999999985 46799999887643
No 104
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.82 E-value=2.8e-09 Score=87.63 Aligned_cols=50 Identities=18% Similarity=0.494 Sum_probs=43.5
Q ss_pred CCCCccCCCCcccccC---ceeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 246 IPDDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~d---Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
..++..||||++.+.+ ++.++|||.||..||.+|+. .+.+||.|+..++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence 4567899999999877 77789999999999999997 56789999988754
No 105
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1.3e-09 Score=80.68 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=41.1
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
.+++.||||++.+.+|++++|||+||+.||.+| ...||.|+..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 467899999999999999999999999999873 56899999887543
No 106
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.80 E-value=4.3e-08 Score=109.36 Aligned_cols=258 Identities=16% Similarity=0.124 Sum_probs=188.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
....+++.+.+.+...++-+...+..+++.+++.. .-++..|.+-|.++|+.+|..|+.+|+++.. ++ +
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~-----~ 118 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DK-----I 118 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GG-----G
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HH-----H
Confidence 45667788889999988888888888877555432 2356788888999999999999999999862 11 1
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchH-
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKA- 501 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~- 501 (627)
....++.+.++|.+.++.+|..|+.++..+..... ..+...++++.|..+|.+.++.++..|+.+|..++.......
T Consensus 119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 22346779999999999999999999999875432 223335788999999999999999999999999998654221
Q ss_pred HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcC---
Q 006877 502 RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG--- 578 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~--- 578 (627)
.-...+.+..|+..+.+.++..+...+.+|..++..++.. ....++.+..++++.++.++..|+.++..+...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 1112345677888887788888888888888877543211 113567777778888899999999999998742
Q ss_pred CHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 579 DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 579 ~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+++....+. .++.+.|+.++. +++.+|..|...|..+..
T Consensus 273 ~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 273 DSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp TTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 333333322 245677776654 778888888888877754
No 107
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=1.7e-09 Score=95.88 Aligned_cols=55 Identities=22% Similarity=0.533 Sum_probs=48.0
Q ss_pred CCCccCCCCcccccCc-------eeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCcc
Q 006877 247 PDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 302 (627)
++++.||||++.+.+| ++++|||+||..||.+|+. ...+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcccccccc
Confidence 4689999999999999 8899999999999999998 55689999999886665443
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=4.3e-09 Score=83.16 Aligned_cols=50 Identities=18% Similarity=0.498 Sum_probs=42.9
Q ss_pred CCCCccCCCCcccccCc---eeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 246 IPDDFRCPISLELMKDP---VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dP---v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
..++..||||++.+.++ +.++|||.||..||.+|+.. +.+||.||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 34677899999999887 66899999999999999985 5689999987754
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.69 E-value=1.1e-08 Score=87.97 Aligned_cols=49 Identities=14% Similarity=0.324 Sum_probs=41.5
Q ss_pred CCccCCCCcccccCce------------------eccCcccccHHHHHHHHHh----CCCCCCCccccccC
Q 006877 248 DDFRCPISLELMKDPV------------------IVSTGQTYERSCIQKWLDA----GHKTCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv------------------~~~cg~t~~r~ci~~~~~~----~~~~CP~~~~~l~~ 296 (627)
.+..||||++.+.+|+ +++|||.||+.||.+|+.. .+.+||.||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999998875 6799999999999999963 46799999987753
No 110
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.64 E-value=5.5e-09 Score=82.15 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=40.1
Q ss_pred CCccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCccccccC
Q 006877 248 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
+++.|+||++.+.+|++++|||+ ||+.|+.+| ..||.||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 56789999999999999999999 999999998 679999988753
No 111
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.63 E-value=2e-07 Score=108.33 Aligned_cols=273 Identities=11% Similarity=0.090 Sum_probs=181.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcch--
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-- 418 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k-- 418 (627)
..++.+...+.+.+|..+..|+..|..++.... ..-.... ..++|.|+..+.++++.+|..++++|..++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 355666667778889999999999999986532 2111112 257899999999999999999999999987531100
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--hhHHhhh--hCcHHHHHHHhccCC--HHHHHHHHHHHHH
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--NKVAIGA--AGAIPALIRLLCDGT--PRGKKDAATAIFN 492 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~--~~~~i~~--~g~i~~Lv~lL~~~~--~~~~~~a~~aL~n 492 (627)
..-.-...++.++..|++. +.++..|+++|.+++..-. ....+.. ...++.|+.++.+.+ ..++..++.+|..
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 0001134577788888765 8999999999998864311 0111211 256778888887543 6788899999999
Q ss_pred hccCCCchHHHHHcCChHHHHHhhccC---------------ChhhHHHHHHHHHHHhcChhhHHHHhh--CCChHHHHH
Q 006877 493 LSIYQGNKARAVRAGIVPPLMRFLKDA---------------GGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLME 555 (627)
Q Consensus 493 L~~~~~~~~~l~~~g~v~~Lv~lL~~~---------------~~~~~~~Al~~L~~L~~~~~~~~~i~~--~g~v~~Lv~ 555 (627)
+.........-.-..+++.+++.+... ...++..++.+|.+++..-.. .+.. ...++.++.
T Consensus 527 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~ 604 (861)
T 2bpt_A 527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFR 604 (861)
T ss_dssp HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHH
T ss_pred HHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHH
Confidence 987544322111124666777766421 234566788888888863221 1111 135677788
Q ss_pred HHhcCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 556 VIRTGSP-RNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 556 lL~~~~~-~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.+++.+. .+++.+..++..++...+........ .+++.|...+.+.++.++..|..++..+.+
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 8887766 88999999998887644332222222 378888888887888899999888887654
No 112
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.62 E-value=1.2e-06 Score=101.91 Aligned_cols=272 Identities=15% Similarity=0.099 Sum_probs=187.8
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChhhHHHHHh--cCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccC-C
Q 006877 343 AIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAE--AGAIPLLVELLSST--DPRTQEHAVTALLNLSIN-D 415 (627)
Q Consensus 343 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~-~ 415 (627)
.++.++..+.+. ++..+..++..|..++..... ..+.. ...++.+...+.++ +..+|..|+.+|.++... .
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 788999999988 899999999999999865311 11111 24567788888876 689999999999988643 1
Q ss_pred cc-hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh-HHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 006877 416 SN-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 493 (627)
Q Consensus 416 ~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 493 (627)
.+ .........++.+...+.+.+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+.++
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 11 001111124666777777778999999999999886543211 1112226778888888778889999999998888
Q ss_pred ccCCC-------------------chHHH--HHcCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHHHh
Q 006877 494 SIYQG-------------------NKARA--VRAGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAIG 545 (627)
Q Consensus 494 ~~~~~-------------------~~~~l--~~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~L~~~~~~~~~i~ 545 (627)
+.... ....+ .-..+++.+++.+.. .+..++..|..+|..++..-.. .++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~ 364 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH
Confidence 75320 00011 113456777777742 3456778888888888764321 122
Q ss_pred hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 546 QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA-EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 546 ~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
. ..++.+...+.+.++.+|+.|+.+|..++.+.+ +...... ..+++.|+..+.+.++.++..|.++|..+.+.
T Consensus 365 ~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 365 P-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp H-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 1 355666677777889999999999999998653 3333222 35889999999999999999999999988765
No 113
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.62 E-value=1.8e-08 Score=103.37 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=44.8
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
...||||.+.+.+|+.++|||+||..|+..|+..+..+||.||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4799999999999999999999999999999986778999999987654
No 114
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.59 E-value=1.5e-06 Score=97.40 Aligned_cols=256 Identities=16% Similarity=0.109 Sum_probs=176.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
.....++.+.+.+.+.++-+.-.+..++..+++... -++..|.+-|.++++.++..|+.+|+++... .+.
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~ 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH
Confidence 445566777888888887777788888766554222 2357888889999999999999999999732 222
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHH
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 502 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 502 (627)
...++.+...|.+.++.+|..|+.++..+..... . +. .++++.+..+|.+.++.++..|+.+|..++........
T Consensus 141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~-~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--E-LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--G-GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--H-HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3567889999999999999999999999875432 1 11 26778888899888999999999999999875432111
Q ss_pred HHHcCChHHHHHhhcc---------------CChhhHHHHHHHHHHHhcCh-hhHH------------------------
Q 006877 503 AVRAGIVPPLMRFLKD---------------AGGGMVDEALAILAILASHQ-EGKT------------------------ 542 (627)
Q Consensus 503 l~~~g~v~~Lv~lL~~---------------~~~~~~~~Al~~L~~L~~~~-~~~~------------------------ 542 (627)
.. ...++.++.+|.+ .++..+...+.+|..++... +...
T Consensus 216 ~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 216 HF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp HH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 11 3567777776653 35666666777777766532 1100
Q ss_pred -----HHhh--------CCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHH
Q 006877 543 -----AIGQ--------AEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRK 609 (627)
Q Consensus 543 -----~i~~--------~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~ 609 (627)
.+.. ..++..|..++.++++.+|..|+..|..++...|... . .....++..+.+.+..+|+.
T Consensus 295 ~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHHHHHHccCCChhHHHH
Confidence 0000 0245667777777777888888888888777554322 1 24456666777777778888
Q ss_pred HHHHHHHHHh
Q 006877 610 AGSILELLQR 619 (627)
Q Consensus 610 A~~lL~~l~~ 619 (627)
|..+|..|..
T Consensus 370 alelL~~l~~ 379 (618)
T 1w63_A 370 AMELSFALVN 379 (618)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcc
Confidence 8887776654
No 115
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.56 E-value=6.8e-07 Score=104.08 Aligned_cols=273 Identities=14% Similarity=0.099 Sum_probs=186.2
Q ss_pred hHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChhhH-HHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCc-c
Q 006877 342 AAIDALLGKLANG--NVEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDS-N 417 (627)
Q Consensus 342 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~-~ 417 (627)
..++.+...+.+. +++++..|++.|..+...-..+- .......+++.+...+.+++..++..++.+|..+..... .
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4667777778766 68899999999998875322111 011112357788888888899999999999999875422 1
Q ss_pred hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh----------------h--HHhhh---hCcHHHHHHHhc
Q 006877 418 KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN----------------K--VAIGA---AGAIPALIRLLC 476 (627)
Q Consensus 418 k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~----------------~--~~i~~---~g~i~~Lv~lL~ 476 (627)
-...+....++.++..+.+.+++++..|+.++..++..... + ..... ...++.++..+.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 331 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT 331 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence 12222336788888888888899999999888888643200 0 00110 245677777775
Q ss_pred c-------CCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChh--hHHHHhhC
Q 006877 477 D-------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQE--GKTAIGQA 547 (627)
Q Consensus 477 ~-------~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~--~~~~i~~~ 547 (627)
. .+...+..|+.+|..++..-.. .++ ..+++.+...+.+.++.+++.|+.+|+.++.... ...... .
T Consensus 332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~ 407 (876)
T 1qgr_A 332 KQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-I 407 (876)
T ss_dssp CCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-H
Confidence 3 2346778888888888764321 112 2456667777778889999999999999998532 222222 2
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH--HHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL--KIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~--~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
..++.++..+.+.++.+|..|+++|.+++...+... ... -..+++.|+..+.+. ++++..|.++|..+.+.
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 478899999998899999999999999998643211 001 124677788888774 89999999999988754
No 116
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.53 E-value=2.8e-06 Score=79.87 Aligned_cols=222 Identities=16% Similarity=0.133 Sum_probs=164.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchH
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKG 419 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~ 419 (627)
.+.+..|..+|...|+.++..++..|..+.+..+..-....-...++.++.++++.|..+...|+.+|.-|-.+ +-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45888999999999999999999999999987544444444456799999999999999999999999998765 33333
Q ss_pred HHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc
Q 006877 420 TIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 499 (627)
.+.. .+..+..++.++++-....++..+..+...... .+.+..+..++.+.+.+++..++.++.|++...++
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 3332 357888888999999999999999998443322 24678888899888999999999999999986543
Q ss_pred hHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHH--hcCCHHHHHHHHHHH
Q 006877 500 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI--RTGSPRNRENAAAVL 572 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL--~~~~~~~~~~A~~~L 572 (627)
... -.+++.-+-.+|.+.++.+++.|+.+|..+.+.+-....+.+.-.+...+.-| ..|.|..+..|-.+-
T Consensus 184 ~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 184 SGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp CCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 321 12455567788999999999999999999998653211111111233333322 247788887776543
No 117
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.52 E-value=1.9e-08 Score=88.98 Aligned_cols=55 Identities=22% Similarity=0.529 Sum_probs=48.1
Q ss_pred CCCccCCCCcccccCc-------eeccCcccccHHHHHHHHHhCCCCCCCccccccCCCCCcc
Q 006877 247 PDDFRCPISLELMKDP-------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPN 302 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dP-------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n 302 (627)
++.+.||||++.+.+| +.++|||+||..||.+|+.. +.+||.|+..+....+.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 5678999999999887 88899999999999999984 5789999999887766654
No 118
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.51 E-value=5e-06 Score=93.06 Aligned_cols=251 Identities=14% Similarity=0.094 Sum_probs=182.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc-hHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN-KGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~-k~~ 420 (627)
..++.+...|.+.++.++..|+.++..+...+++.. .++++.+..+|.+.|+.++..|+.+|..++..+.. ...
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 457888889999999999999999999998776533 26788889999999999999999999999865321 112
Q ss_pred HhhcCChHHHHHHHcc---------------CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc------CC
Q 006877 421 IVNAGAIPDIVDVLKN---------------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD------GT 479 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~---------------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~------~~ 479 (627)
+ ...++.++.+|.+ .++..+...+.+|..+...+... ....++.|..++.. .+
T Consensus 217 ~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 217 F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchH
Confidence 2 3578888888763 36888888899999887654321 12344555555532 23
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc
Q 006877 480 PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT 559 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~ 559 (627)
..+...|+.++.++...+ .+. ..+++.|..+|.+.++.++..|+..|..++.... .++. .....++..+.+
T Consensus 291 ~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 291 NAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccC
Confidence 567888899998875432 222 2467888999988889999999999998887422 1221 256677888888
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 560 GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 560 ~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.+..+|..|+.+|..++.... ... +++.|...+.+.++..+..+...+..+..
T Consensus 362 ~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 888899999999999987642 221 34566667777778888888777777754
No 119
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.49 E-value=2.7e-06 Score=98.86 Aligned_cols=273 Identities=14% Similarity=0.083 Sum_probs=185.9
Q ss_pred hHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhChhh-H--HHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccC-
Q 006877 342 AAIDALLGKLANG-NVEEQRAAAGELRLLAKRNADN-R--VCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSIN- 414 (627)
Q Consensus 342 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~-r--~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~- 414 (627)
..++.|+..+.++ ++..+..++..+..++..-... + .. .....++.++..+.++ +..+|..|+.++.++...
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4788999999888 8999999999999998642211 0 00 0123567778888887 899999999999987431
Q ss_pred Ccc-hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchh--hHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHH
Q 006877 415 DSN-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDEN--KVAIGAAGAIPALIRLLCDGTPRGKKDAATAIF 491 (627)
Q Consensus 415 ~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 491 (627)
..+ .........++.+...+.+++++++..++.+|..+...... ...+ ....++.+...+.+.+..++..|+.++.
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~ 291 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWS 291 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 100 00001122466677777788999999999999888654321 1111 1156677777788888999999999998
Q ss_pred HhccCCCc-----------------hHHHHHcCChHHHHHhhccC-------ChhhHHHHHHHHHHHhcChhhHHHHhhC
Q 006877 492 NLSIYQGN-----------------KARAVRAGIVPPLMRFLKDA-------GGGMVDEALAILAILASHQEGKTAIGQA 547 (627)
Q Consensus 492 nL~~~~~~-----------------~~~l~~~g~v~~Lv~lL~~~-------~~~~~~~Al~~L~~L~~~~~~~~~i~~~ 547 (627)
.++..... ...-.-..+++.++..+... +..+...|..+|..++..-.. .+. .
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~ 368 (861)
T 2bpt_A 292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-E 368 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-H
T ss_pred HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-H
Confidence 88764211 00111145678888888642 245677888888888874321 111 1
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHhH
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGD-AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQRI 620 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~~ 620 (627)
..++.+...+.+.+...|+.|+.+|..++.+. +........ .+++.|+..+.+.++.++..+.++|..+.+.
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 24566666677778899999999999999764 243333332 4788899999999999999999999888754
No 120
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.49 E-value=4.2e-07 Score=97.44 Aligned_cols=267 Identities=10% Similarity=0.034 Sum_probs=178.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC--CHHHHHHHHHHHHhhccCCcchH-HH
Q 006877 345 DALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST--DPRTQEHAVTALLNLSINDSNKG-TI 421 (627)
Q Consensus 345 ~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~nLs~~~~~k~-~i 421 (627)
..++..|.+.+..+ ..++..|..++........ -.+.+|.|+..+.++ ++.+++.|+.+|..++.+-.... .-
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 34666666666556 6677777777754211111 136889999999998 99999999999999976421110 01
Q ss_pred hhcCChHHHHHHHccC--CHHHHHHHHHHHHHhcCCch-hh-HHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 006877 422 VNAGAIPDIVDVLKNG--SMEARENAAATLFSLSVIDE-NK-VAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~--~~e~~~~aa~~L~~Ls~~~~-~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~ 497 (627)
.....++.++..|.+. +.+++..|+.++.++...-. .- ......-.++.+...+.+++..++..++.+|..++...
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 1134678888889887 79999999999998753211 10 01111124666677777788999999999999998643
Q ss_pred CchH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHH------------------hh---CCChHHHHH
Q 006877 498 GNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAI------------------GQ---AEPIPVLME 555 (627)
Q Consensus 498 ~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i------------------~~---~g~v~~Lv~ 555 (627)
...- ..+..++++.++..+.+.++.++..|+..+..++......... .+ ...+|.++.
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 328 (462)
T 1ibr_B 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (462)
T ss_dssp GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHH
Confidence 2211 1111267788888888888899999999999888753111110 00 124566666
Q ss_pred HHhc-------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 556 VIRT-------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 556 lL~~-------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.+.. .+...+..|..+|..++..-++ .+. ..+++.+...+.+.+.+.|..|..+|..+.+
T Consensus 329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 6643 2346889999999998876542 122 2467777788888899999999999998864
No 121
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=8.9e-08 Score=76.64 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=39.4
Q ss_pred CCccCCCCcccccC--------------ceec-cCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 248 DDFRCPISLELMKD--------------PVIV-STGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~d--------------Pv~~-~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
++-.|+||++.+.+ ++.+ +|||.|+..||.+|+. .+.+||.||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 46679999998877 4455 5999999999999998 45789999987653
No 122
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=4.4e-08 Score=77.21 Aligned_cols=45 Identities=18% Similarity=0.371 Sum_probs=39.3
Q ss_pred CCCccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCccccccC
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
.+++.||||++.+.+||+++|||+ ||..|+.++ ..||.||.++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 356789999999999999999999 999999643 679999988764
No 123
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.42 E-value=1.4e-07 Score=71.62 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=41.9
Q ss_pred CCccCCCCcccccCceec--cCccc-ccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDPVIV--STGQT-YERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~--~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
++..|+||++..++++.+ +|||. ||..|+.+|+. .+..||.||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 566899999999999987 99999 89999999997 5578999998774
No 124
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.39 E-value=4e-07 Score=110.37 Aligned_cols=271 Identities=12% Similarity=0.061 Sum_probs=187.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..+..++..+.+.|.+.+..|...|.+........-..-.....++.|++.|.+.++.+|..|+.+|.+++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~- 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ- 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH-
Confidence 4678899999999999999999999887643211000001124578899999999999999999999999764221 11
Q ss_pred hhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh------HHhhhhCcHHHHHHHhc-cCCHHHHHHHHHHHHHhc
Q 006877 422 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK------VAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLS 494 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~------~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~ 494 (627)
-..+++.++..|.++++.+|..|+.+|..++..-... ..-.-...+|.|+..+. +++...+..|+.+|.+++
T Consensus 84 -~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 -VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp -HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1235677888888888889999998888876432111 01112367899999998 478899999999999988
Q ss_pred cCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC-HHHHHHHHHHHH
Q 006877 495 IYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS-PRNRENAAAVLW 573 (627)
Q Consensus 495 ~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~A~~~L~ 573 (627)
...+....-.-..+++.|+..|.+++..++..|+.+|..++...... +. ...++.++..|...+ +..+..|+.++.
T Consensus 163 ~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 163 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 53211000011346677778888888899999999999999854322 22 245888888887543 456777888888
Q ss_pred HHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 574 AICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 574 ~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
.++...+..... .-..+++.++..+.+.++.+++.|..++..+.+
T Consensus 240 ~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 240 AISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 887654431111 113578899999988889999999988887754
No 125
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.37 E-value=2.1e-07 Score=70.47 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=41.5
Q ss_pred CCccCCCCcccccCceec--cCccc-ccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDPVIV--STGQT-YERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~--~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.+..|+||++..+|++++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 356799999999999988 99998 999999999974 578999998874
No 126
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=8e-08 Score=79.37 Aligned_cols=46 Identities=13% Similarity=0.390 Sum_probs=39.4
Q ss_pred CCccCCCCcccccCceec---cCcccccHHHHHHHHHh----C---CCCCCC--cccc
Q 006877 248 DDFRCPISLELMKDPVIV---STGQTYERSCIQKWLDA----G---HKTCPK--TQQT 293 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~---~cg~t~~r~ci~~~~~~----~---~~~CP~--~~~~ 293 (627)
+.+.||||.+.+.+|+.+ +|||.||+.|+..|+.. | ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 578999999999999764 69999999999999973 3 247999 9887
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.34 E-value=2.4e-06 Score=83.57 Aligned_cols=184 Identities=11% Similarity=0.102 Sum_probs=138.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChhhH-HHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCcchHHHhh
Q 006877 346 ALLGKLANGNVEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVN 423 (627)
Q Consensus 346 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~nLs~~~~~k~~i~~ 423 (627)
.+.+.+.+.+|..+..|+..|..+...++... ..+ ..+++.|...|. +.+..++..|+.++..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 37788889999999999999999987632211 001 134678888894 89999999999999999853111101112
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCC-Cch--
Q 006877 424 AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQ-GNK-- 500 (627)
Q Consensus 424 ~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~-~~~-- 500 (627)
...++.|+..+.+.+..++..|..+|..+...... ...++.+...+++.++.++..++.+|..+.... ...
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34789999999999999999999999988654321 246788889999999999999999999965432 211
Q ss_pred HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcCh
Q 006877 501 ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQ 538 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~ 538 (627)
...+ ..+++.|+.+|.+.+..++..|..++..++..-
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 1222 368999999999999999999999999998743
No 128
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.33 E-value=3.7e-07 Score=76.67 Aligned_cols=47 Identities=19% Similarity=0.410 Sum_probs=39.6
Q ss_pred CCccCCCCcccccCc------------------eeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDP------------------VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dP------------------v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
++-.|+||++.+.+| +.++|||.|+..||.+|+. .+.+||.||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 356799999988876 3369999999999999998 5789999998753
No 129
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.29 E-value=4.7e-06 Score=81.45 Aligned_cols=184 Identities=13% Similarity=0.091 Sum_probs=137.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCC-chhhHHhhhhCcHHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 006877 428 PDIVDVLKNGSMEARENAAATLFSLSVI-DENKVAIGAAGAIPALIRLLC-DGTPRGKKDAATAIFNLSIYQGNKARAVR 505 (627)
Q Consensus 428 ~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~nL~~~~~~~~~l~~ 505 (627)
+.+.+.+.+.++..|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-...-.-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4588888899999999999999888654 2211000 1256788888894 88999999999999999964322112222
Q ss_pred cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CHHH-H
Q 006877 506 AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTG-DAEQ-L 583 (627)
Q Consensus 506 ~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~-~~~~-~ 583 (627)
..+++.|+..+.+.+..+++.|..+|..++..... ...++.+...+++.++.+|..++..|..+... ++.. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 45789999999999999999999999999875421 12577888888888999999999999995443 3331 1
Q ss_pred HHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 584 KIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 584 ~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
..... .+++.|..++.+.++++|..|..++..+..
T Consensus 171 ~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 11222 578999999999999999999999988764
No 130
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.22 E-value=2.1e-07 Score=73.93 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=39.1
Q ss_pred CCccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCccccccC
Q 006877 248 DDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
++..|+||++.+.+|+.++|||. ||..|+.+|. .||.||.++..
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 45689999999999999999999 9999998773 79999988764
No 131
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.20 E-value=6.3e-06 Score=99.88 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=163.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcch--
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNK-- 418 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k-- 418 (627)
...++.+++.|.+.+++++..|+..|..++..... .. -..+++.|+..|.++++.+|..|+.+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~--~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ--VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH--HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 45788899999989999999999999999864433 11 1235688888898989999999999999887532111
Q ss_pred ----HHHhhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 006877 419 ----GTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 493 (627)
Q Consensus 419 ----~~i~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 493 (627)
..-.....++.|+..+. ++++.++..|+.+|..++........-.-...++.|+..+.+.+..++..|+.+|..+
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11113457888999998 5789999999999998864211000001135677788888888889999999999999
Q ss_pred ccCCCchHHHHHcCChHHHHHhhccCC-hhhHHHHHHHHHHHhcChhhHHHHhh--CCChHHHHHHHhcCCHHHHHHHHH
Q 006877 494 SIYQGNKARAVRAGIVPPLMRFLKDAG-GGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRTGSPRNRENAAA 570 (627)
Q Consensus 494 ~~~~~~~~~l~~~g~v~~Lv~lL~~~~-~~~~~~Al~~L~~L~~~~~~~~~i~~--~g~v~~Lv~lL~~~~~~~~~~A~~ 570 (627)
+...+.. + -..+++.|++.|.+.+ ...+..++.++..++..... .+.. ...++.++..+...++.+|+.|..
T Consensus 203 ~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 203 VMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8754432 1 2346888888886543 35566678888877763221 1221 357888899888888889999999
Q ss_pred HHHHHhcCCH
Q 006877 571 VLWAICTGDA 580 (627)
Q Consensus 571 ~L~~L~~~~~ 580 (627)
++..++...+
T Consensus 278 ~l~~l~~~~~ 287 (1230)
T 1u6g_C 278 AFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHHCh
Confidence 9999887654
No 132
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.18 E-value=0.0001 Score=82.38 Aligned_cols=254 Identities=13% Similarity=0.103 Sum_probs=173.7
Q ss_pred hHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchH
Q 006877 342 AAIDALLGKL--ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKG 419 (627)
Q Consensus 342 ~~i~~Lv~~L--~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~ 419 (627)
..++.+.+.+ .+.++.++..|+.++..+...+++.. ...+.++.|.++|.+.|+.++.+|+.++..++.++..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 3556677788 77889999999999999988665432 1248999999999999999999999999999764321
Q ss_pred HHhhcCChHHHHHHHc----cC-------------CHHHHHHHHHHHHHhcCCc--hhhHHhhhhCcHHHHHHHhc----
Q 006877 420 TIVNAGAIPDIVDVLK----NG-------------SMEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLC---- 476 (627)
Q Consensus 420 ~i~~~g~i~~Lv~lL~----~~-------------~~e~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~---- 476 (627)
.+ ...++.+++.|. .+ ++-.+.....+|..+...+ +.+..+. ..+..++..+.
T Consensus 221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK 296 (621)
T ss_dssp HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence 11 123455554443 22 5778888888888776532 2222222 23344443321
Q ss_pred -----cCC--HHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCC
Q 006877 477 -----DGT--PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEP 549 (627)
Q Consensus 477 -----~~~--~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~ 549 (627)
+.+ ..+...|+.++..+...+ .+. ..++..|..+|.+.++.++..|+..|..++........+. ..
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEP----NLL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcH----HHH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HH
Confidence 112 267777888888886322 122 2367788899988889999999999999988643222332 35
Q ss_pred hHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 550 IPVLMEVIR-TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 550 v~~Lv~lL~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
...++..|. +++..++..|..+|..++.. .+... ++..|...+...+...++.+...+..+.
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 778888888 78888999999999999864 33332 4445667777777777777777666664
No 133
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.16 E-value=0.00021 Score=79.77 Aligned_cols=256 Identities=11% Similarity=0.097 Sum_probs=174.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHh--cCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL--SSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
.+..+.+.|.+.++.++.-|++.|..+.. ++ +. ...+|.+.++| .+.++-+|..|+.++.++....+ ..
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hh
Confidence 56677888899999999999999999853 33 22 24568889999 88899999999999999975321 22
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc----cC-------------CHHHH
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC----DG-------------TPRGK 483 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~-------------~~~~~ 483 (627)
+-..+.++.+.++|.+.++.+..+|+.++..++..+.. .+ ...+|.+++.|. .+ ++=.+
T Consensus 183 ~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~q 258 (621)
T 2vgl_A 183 VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 258 (621)
T ss_dssp CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHH
T ss_pred cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHH
Confidence 22358899999999988999999999999998764421 11 134455554443 22 45566
Q ss_pred HHHHHHHHHhccCCC--chHHHHHcCChHHHHHhhcc---------CC--hhhHHHHHHHHHHHhcChhhHHHHhhCCCh
Q 006877 484 KDAATAIFNLSIYQG--NKARAVRAGIVPPLMRFLKD---------AG--GGMVDEALAILAILASHQEGKTAIGQAEPI 550 (627)
Q Consensus 484 ~~a~~aL~nL~~~~~--~~~~l~~~g~v~~Lv~lL~~---------~~--~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v 550 (627)
...+..|..++..++ .+..+.+ .++.++..+.+ .+ ..+.-.|+.++..+...++... .++
T Consensus 259 i~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~ 331 (621)
T 2vgl_A 259 VKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RAC 331 (621)
T ss_dssp HHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHH
Confidence 667777777765322 2222222 33444433221 12 2667778888888764443222 356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhh-cCChHHHHHHHHHHHHHHhHH
Q 006877 551 PVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSE-SGTDRAKRKAGSILELLQRID 621 (627)
Q Consensus 551 ~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~-~~~~~~k~~A~~lL~~l~~~~ 621 (627)
..|..+|.+.++.+|-.|+..|..++...|. .. ++. .....++..+. +.+..++.+|..+|..|....
T Consensus 332 ~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~ 400 (621)
T 2vgl_A 332 NQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AVK-THIETVINALKTERDVSVRQRAVDLLYAMCDRS 400 (621)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh
Confidence 7788888888899999999999999987642 11 222 34566777777 888899999999988876443
No 134
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.9e-06 Score=66.07 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=39.4
Q ss_pred CCCccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCccccccC
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
.++..|+||++...+++.+||||. ||..|+.. ...||.||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 457889999999999999999999 99999984 3679999988754
No 135
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.14 E-value=4.2e-07 Score=92.94 Aligned_cols=46 Identities=13% Similarity=0.414 Sum_probs=41.4
Q ss_pred CCCCccCCCCcccccCceeccCccc-ccHHHHHHHHHhCCCCCCCccccccC
Q 006877 246 IPDDFRCPISLELMKDPVIVSTGQT-YERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~cg~t-~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
+.+++.||||++.+.+||.++|||+ ||+.|+.+| ..||.||.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4567899999999999999999999 999999988 579999988753
No 136
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.14 E-value=4.5e-05 Score=71.80 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=161.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcc-hHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch-hhHH
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSINDSN-KGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE-NKVA 461 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~-~~~~ 461 (627)
+.+..|..+|...|+.++.+|+.+|..+-+.-+. .....-...++.++.++++.++.+.-.|+.+|..|-..-+ ....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4577899999999999999999999999776322 2222234579999999999999999999999988865432 1222
Q ss_pred hhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH
Q 006877 462 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK 541 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~ 541 (627)
.. ..+..|.+++.++++-....|+..+.-|......+ +++..+..++.+.+..++..++.+|.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 11 24577888888899999999999999994332222 35667888888899999999999999999854332
Q ss_pred HHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCcHHHHHHhh-hcCChHHHHHHHHHHHHHH
Q 006877 542 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA--EQLKIARELDAEEALKELS-ESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 542 ~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~--~~~~~~~~~g~i~~L~~l~-~~~~~~~k~~A~~lL~~l~ 618 (627)
..+ .+.+.-+-++|++.++.+++.|..+|..+.+..- +....+. ++....-.+. ..|.|..+.+|...-..+.
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 211 2456667788999999999999999999887641 1111111 2233333455 6789999999987766554
No 137
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=5e-06 Score=65.87 Aligned_cols=52 Identities=15% Similarity=0.394 Sum_probs=42.6
Q ss_pred CCCCCccCCCCcccc--cCceeccCc-----ccccHHHHHHHHHhC-CCCCCCccccccC
Q 006877 245 VIPDDFRCPISLELM--KDPVIVSTG-----QTYERSCIQKWLDAG-HKTCPKTQQTLLH 296 (627)
Q Consensus 245 ~~~~~f~Cpic~~~m--~dPv~~~cg-----~t~~r~ci~~~~~~~-~~~CP~~~~~l~~ 296 (627)
...++..|+||++-+ .+|++++|+ |.|.+.||.+|+... ..+||.|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 344567899999766 478888996 999999999999864 4699999988764
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.07 E-value=6.2e-07 Score=78.88 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=91.3
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHh
Q 006877 383 AGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAI 462 (627)
Q Consensus 383 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i 462 (627)
...++.|+.+|.++++.+|..|+++|..+.. ..++.|+..|++.++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 4578889999999999999998888876632 136889999999999999999999988752
Q ss_pred hhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH
Q 006877 463 GAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI 533 (627)
Q Consensus 463 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~ 533 (627)
..+++.|+.++.++++.++..|+++|.++.. ..+++.|..++.+++..++..|..+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2468999999999999999999999998862 2468889999988888888888887754
No 139
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.06 E-value=0.0001 Score=77.49 Aligned_cols=264 Identities=11% Similarity=0.084 Sum_probs=175.6
Q ss_pred cCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHH--HHHHHhcCC-CHHHHHHHHHHHHhhccCCcchHHHhhcC--C
Q 006877 352 ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIP--LLVELLSST-DPRTQEHAVTALLNLSINDSNKGTIVNAG--A 426 (627)
Q Consensus 352 ~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~--~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~~~k~~i~~~g--~ 426 (627)
..+++-.+..|...+..++..+...-..+ ...+. .++..|++. +.+.+.-++.+|..|...++.|..+.+.+ .
T Consensus 135 ~~dd~~~ll~a~~l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~ 212 (480)
T 1ho8_A 135 KGDFQTVLISGFNVVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKF 212 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHH
T ss_pred cccchHHHHHHHHHHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccch
Confidence 34445566667666666653332211111 01112 355556553 45667788899998888888888887533 4
Q ss_pred hHHHHHHHcc---------------C--CHHHHHHHHHHHHHhcCCchhhHHhhhhCcH--HHHHHHhccC-CHHHHHHH
Q 006877 427 IPDIVDVLKN---------------G--SMEARENAAATLFSLSVIDENKVAIGAAGAI--PALIRLLCDG-TPRGKKDA 486 (627)
Q Consensus 427 i~~Lv~lL~~---------------~--~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i--~~Lv~lL~~~-~~~~~~~a 486 (627)
+++++.+++. + ..+++.+++-++|-||..++....+...+.. +.|+.+++.. ..++.+-+
T Consensus 213 ~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~ 292 (480)
T 1ho8_A 213 MPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLC 292 (480)
T ss_dssp HHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred hHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHH
Confidence 6777655441 1 2567899999999999998877777766643 6777777764 58899999
Q ss_pred HHHHHHhccCCC-ch----H-HHHHcCChHHHHHhhcc---CChhhHHHHHHHHHHHhc---------------------
Q 006877 487 ATAIFNLSIYQG-NK----A-RAVRAGIVPPLMRFLKD---AGGGMVDEALAILAILAS--------------------- 536 (627)
Q Consensus 487 ~~aL~nL~~~~~-~~----~-~l~~~g~v~~Lv~lL~~---~~~~~~~~Al~~L~~L~~--------------------- 536 (627)
+.+|.||..... +. . .++..++ +++++.|.. .|+++.+..-.+...|-.
T Consensus 293 la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~ 371 (480)
T 1ho8_A 293 ISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLC 371 (480)
T ss_dssp HHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcc
Confidence 999999987542 22 2 2233444 556666654 567765543333222211
Q ss_pred -ChhhHH---------HHhhC--CChHHHHHHHhc----------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHH
Q 006877 537 -HQEGKT---------AIGQA--EPIPVLMEVIRT----------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEA 594 (627)
Q Consensus 537 -~~~~~~---------~i~~~--g~v~~Lv~lL~~----------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~ 594 (627)
+|.++. .+.+. ..+..|+++|.+ .++.+..-|+.=+..++...|..+..+.+.|+-..
T Consensus 372 WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~ 451 (480)
T 1ho8_A 372 WSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKAD 451 (480)
T ss_dssp CCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHH
T ss_pred cCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHH
Confidence 122221 12221 357889999974 24667777888899999999998988889999999
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHH
Q 006877 595 LKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 595 L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
++.++.+.+++++..|..+++-+-
T Consensus 452 VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 452 IMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888654
No 140
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.1e-05 Score=79.24 Aligned_cols=189 Identities=8% Similarity=0.105 Sum_probs=135.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HhhhChhhHHHHHh-cCCHHHHHHHh-cCCCHHHHHHHHHHHHhhccCCc--chH-H
Q 006877 347 LLGKLANGNVEEQRAAAGELRL-LAKRNADNRVCIAE-AGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDS--NKG-T 420 (627)
Q Consensus 347 Lv~~L~s~~~~~~~~a~~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL-~~~~~~~~~~A~~~L~nLs~~~~--~k~-~ 420 (627)
+-..+.|.+|..+..|+..|.. +..+++.....-.+ ...+..|.+.+ +..+..++..|+.+|..|+..-. .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5567789999999999999999 87543321100001 13467788888 68899999999999999985311 111 1
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhh--hhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG--AAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 498 (627)
. ..-.++.+++.+++....++..+..+|..+...-+. .... -...++.|+..|++.++.++..++.+|..+.....
T Consensus 101 y-~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 Y-VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp H-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1 123588899999888888988888888777543211 1111 11467888889998899999999999998886543
Q ss_pred ch-HHH--H-HcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 006877 499 NK-ARA--V-RAGIVPPLMRFLKDAGGGMVDEALAILAILASH 537 (627)
Q Consensus 499 ~~-~~l--~-~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~ 537 (627)
.. ..+ . ...++|.|.+++.+.+..++..|..++..++..
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 21 222 2 267899999999999999999999999998863
No 141
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.02 E-value=6.7e-07 Score=78.64 Aligned_cols=120 Identities=22% Similarity=0.168 Sum_probs=90.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
..++.++..|++.++.++..|++.|..+.. ..++.|+.+|.++++.+|..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 366778888888888888888777765532 136899999999999999999999988752
Q ss_pred hhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 006877 422 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNL 493 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 493 (627)
..+++.|+..|+++++.++..|+++|..+.. ..+++.|+.++++.+..++..|+.+|.+|
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2358899999999999999999999988742 34789999999888889999999888653
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.93 E-value=5.4e-05 Score=74.28 Aligned_cols=190 Identities=9% Similarity=0.094 Sum_probs=136.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-hcCC-chhhHHhhh-hCcHHHHHHHh-ccCCHHHHHHHHHHHHHhccCCC--chHH
Q 006877 429 DIVDVLKNGSMEARENAAATLFS-LSVI-DENKVAIGA-AGAIPALIRLL-CDGTPRGKKDAATAIFNLSIYQG--NKAR 502 (627)
Q Consensus 429 ~Lv~lL~~~~~e~~~~aa~~L~~-Ls~~-~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~aL~nL~~~~~--~~~~ 502 (627)
.+.+.+.+.++..|..|+..|.. +... ......-.. ...+..|...+ ++.+..++..|+.+|..|+..-. .-..
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667788999999999999998 7632 111100112 25677888888 67788999999999999985322 1110
Q ss_pred HHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHh--hCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCH
Q 006877 503 AVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIG--QAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDA 580 (627)
Q Consensus 503 l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~--~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~ 580 (627)
-.-.-++|.++..+.+....+++.+..+|..++.+-+. .... -...++.|+..|++.++.+|+.++.+|..++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 11123689999999988888999999988888874211 0000 01256788888888899999999999999887654
Q ss_pred ---HHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 581 ---EQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 581 ---~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
......+...+++.|..++.+.++.+|..|..+|..+.+
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222233324689999999999999999999999988754
No 143
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.93 E-value=1.4e-06 Score=74.12 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=0.4
Q ss_pred CccCCCCcccccCce-----------------e-ccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELMKDPV-----------------I-VSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv-----------------~-~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
+-.|+||++.+.+|. . ++|||.|+..||.+|+. .+.+||.||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence 457999999887742 2 48999999999999998 4778999998753
No 144
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.91 E-value=0.00014 Score=76.44 Aligned_cols=229 Identities=15% Similarity=0.141 Sum_probs=154.6
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHhhhChhhHHHHHhcC--CHHHHHHHhcC---------------C--CHHHHHHHHH
Q 006877 347 LLGKLANG-NVEEQRAAAGELRLLAKRNADNRVCIAEAG--AIPLLVELLSS---------------T--DPRTQEHAVT 406 (627)
Q Consensus 347 Lv~~L~s~-~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~A~~ 406 (627)
++..|.+. +.+.+.-++..|..+.. .+++|..+.+.+ .+|+++.+++. + ...++.+++.
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 44555542 35556678889998886 788898887653 47777765541 1 3567899999
Q ss_pred HHHhhccCCcchHHHhhcCCh--HHHHHHHccC-CHHHHHHHHHHHHHhcCCch-h-h---H-HhhhhCcHHHHHHHhcc
Q 006877 407 ALLNLSINDSNKGTIVNAGAI--PDIVDVLKNG-SMEARENAAATLFSLSVIDE-N-K---V-AIGAAGAIPALIRLLCD 477 (627)
Q Consensus 407 ~L~nLs~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~~-~-~---~-~i~~~g~i~~Lv~lL~~ 477 (627)
+++-|+++++....+...+.. +.|+.+++.. .+.+..-+.++|.||..... . . . .+...++ +.+++.|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998776777666533 5677777765 58889999999999977641 1 1 1 2222344 556666654
Q ss_pred ---CCHHHHHHHHH-------HHHHhccCCCc---------------hH-HH--------HHc--CChHHHHHhhcc---
Q 006877 478 ---GTPRGKKDAAT-------AIFNLSIYQGN---------------KA-RA--------VRA--GIVPPLMRFLKD--- 518 (627)
Q Consensus 478 ---~~~~~~~~a~~-------aL~nL~~~~~~---------------~~-~l--------~~~--g~v~~Lv~lL~~--- 518 (627)
.|++...+.-. .+..|+..++. +. .+ -+. .++..|+++|.+
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 25544433211 12222211111 11 22 222 247889999973
Q ss_pred -------CChhhHHHHHHHHHHHhc-ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 519 -------AGGGMVDEALAILAILAS-HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 519 -------~~~~~~~~Al~~L~~L~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
.++.+...|+.=++.++. +|.||..+-+.|+=..++++|.+.++++|.+|..++..+..
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 356677888888899988 68899888788999999999999999999999998876544
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.81 E-value=0.00076 Score=67.52 Aligned_cols=181 Identities=11% Similarity=0.084 Sum_probs=137.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH-hcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHH-c
Q 006877 429 DIVDVLKNGSMEARENAAATLFS-LSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR-A 506 (627)
Q Consensus 429 ~Lv~lL~~~~~e~~~~aa~~L~~-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~-~ 506 (627)
.+++.|.+++.+.+..+..-|.. ++.+......++..+++..|+.+...++...+..++.||.+|-.+..+...+++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34555666777777777777776 566678889999999999999999999999999999999999998877777775 4
Q ss_pred CChHHHHHhhccCChhhHHHHHHHHHHHhcChh-hHHHHhh--------C--CChHHHHHHHh---cCCHHHHHHHHHHH
Q 006877 507 GIVPPLMRFLKDAGGGMVDEALAILAILASHQE-GKTAIGQ--------A--EPIPVLMEVIR---TGSPRNRENAAAVL 572 (627)
Q Consensus 507 g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~-~~~~i~~--------~--g~v~~Lv~lL~---~~~~~~~~~A~~~L 572 (627)
..|..+..++.+.+..++..|+.+|..++...+ +...+.+ . .....|+.+|+ +++.+++.+|...+
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 689999999998888999999999999988543 3322221 1 24789999997 67889999998888
Q ss_pred HHHhcCCH--H----HHHHHHHcCcHHHHHHhhhcC--ChHHHHH
Q 006877 573 WAICTGDA--E----QLKIARELDAEEALKELSESG--TDRAKRK 609 (627)
Q Consensus 573 ~~L~~~~~--~----~~~~~~~~g~i~~L~~l~~~~--~~~~k~~ 609 (627)
-.+..+.+ + ....+.+.|+-..+...+... ++..++.
T Consensus 282 N~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 282 NKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 77655433 2 334455667767777766654 4455554
No 146
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.79 E-value=0.00033 Score=70.14 Aligned_cols=148 Identities=11% Similarity=0.031 Sum_probs=121.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHH-hccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhC-
Q 006877 470 ALIRLLCDGTPRGKKDAATAIFN-LSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA- 547 (627)
Q Consensus 470 ~Lv~lL~~~~~~~~~~a~~aL~n-L~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~- 547 (627)
.+++-|.+++.+.++.++.-|.. +..+.+-...++..+++..|+.+....+...+.+++.+|.+|..+..|...++..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 34455667778888889999998 5667777889999999999999999899999999999999999999999888754
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--------C--cHHHHHHhhh---cCChHHHHHHHHHH
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIAREL--------D--AEEALKELSE---SGTDRAKRKAGSIL 614 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~--------g--~i~~L~~l~~---~~~~~~k~~A~~lL 614 (627)
..|..+..++.+....+...|.++|..+|.+++.....+.++ | -...|+.+++ +++...+.+|..++
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 689999999998778899999999999999886444433321 1 3678888887 67899999988887
Q ss_pred HHH
Q 006877 615 ELL 617 (627)
Q Consensus 615 ~~l 617 (627)
--+
T Consensus 282 N~l 284 (339)
T 3dad_A 282 NKT 284 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 147
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.64 E-value=0.0036 Score=72.30 Aligned_cols=266 Identities=15% Similarity=0.168 Sum_probs=187.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---hhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-Cc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA---DNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DS 416 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~ 416 (627)
.+.+..+.+.+.+.... +.|+..+..++.... ..-.+++ +.+|.++..+.+.+..++..|-.++..+... +.
T Consensus 53 ~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~ 128 (986)
T 2iw3_A 53 EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128 (986)
T ss_dssp HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG
T ss_pred hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH
Confidence 35777777777654333 788888888885432 2223333 6789999999998999999888888777542 22
Q ss_pred chHHHhhcCChHHHHHHHccC-CHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCCHHHHHHHHHHHHHh
Q 006877 417 NKGTIVNAGAIPDIVDVLKNG-SMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNL 493 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL 493 (627)
... ...+|.|+..|.+. .+..+..|+.++..|+... ...++.. ..||.+-+.+.+..+++++.|..++..+
T Consensus 129 ~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 129 VAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 111 34588999999766 5999999999999997643 4555554 7889999999888899999999999999
Q ss_pred ccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHH
Q 006877 494 SIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLW 573 (627)
Q Consensus 494 ~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~ 573 (627)
|..-+|+.. ...||.|++.+.+++. +..++..|+.-....+.-.-... =.+|.|.+-|...+..++..++-++-
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccCcchhheeeEEEEc
Confidence 876555432 3578999999987633 55566555544332221100000 12566666666677889999999999
Q ss_pred HHhc--CCHHHHHHHHHcCcHHHHHHhhhc-CChHHHHHHHHHHHHHHhHHhh
Q 006877 574 AICT--GDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQRIDMA 623 (627)
Q Consensus 574 ~L~~--~~~~~~~~~~~~g~i~~L~~l~~~-~~~~~k~~A~~lL~~l~~~~~~ 623 (627)
|+|. .+|.....++ ...+|.|...... .+|++++.|.+++..|.+....
T Consensus 277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 9997 5665555444 3578888877665 4899999999999999876543
No 148
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.62 E-value=0.00063 Score=69.73 Aligned_cols=263 Identities=11% Similarity=0.060 Sum_probs=145.9
Q ss_pred CccHHHHhhhHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHH
Q 006877 300 TPNYVLKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVC 379 (627)
Q Consensus 300 ~~n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~ 379 (627)
.+|..+|++.=-+....... |.- . --.+..+.+.+++.++-++-.|++.|..+... +--.
T Consensus 79 s~d~~lKrLvYLyl~~~~~~-~~e---------------~-iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~- 138 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSCI-AED---------------V-IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ- 138 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTTT-SSC---------------G-GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHH---------------H-HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-
Confidence 56778888865544432211 111 0 24678899999999999999999999998742 2222
Q ss_pred HHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhh
Q 006877 380 IAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENK 459 (627)
Q Consensus 380 i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~ 459 (627)
...+.+.+.|.+.++-++..|+.+...|.... .+ ++ .++++.+-+++.+.++.+..+|.++|..+...+.
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe-~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-- 208 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FD-VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-- 208 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HH-HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HH-HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--
Confidence 34567888889999999999999999886543 22 22 3689999999999999999999999999976542
Q ss_pred HHhhhhCcHHHHHHHhccC---CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhc
Q 006877 460 VAIGAAGAIPALIRLLCDG---TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILAS 536 (627)
Q Consensus 460 ~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~ 536 (627)
.++..|+.-+..+ ++-.+..-+..+..++..++ .-.....++.+..+|.+.++.++-.|+.++..+..
T Consensus 209 ------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 209 ------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Confidence 1445556555543 33333333444433333220 01224566777778888888899999999888765
Q ss_pred ChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHH
Q 006877 537 HQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKA 610 (627)
Q Consensus 537 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A 610 (627)
.+.. .. ..++..|..++.+.++.+|-.|+..|..+....|..+.. .-.-+.+++.+++..+..-|
T Consensus 280 ~~~~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 280 CSAK---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred CCHH---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence 3221 11 245677778888888999999999999999988765432 22234555555554444333
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.61 E-value=0.00094 Score=68.45 Aligned_cols=244 Identities=10% Similarity=0.006 Sum_probs=154.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
.....++.+.+.|.+.++-..-.+..+++..++. + =++..|.+=++++++-++-.|+.+|+++...+-
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m------ 136 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM------ 136 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH------
Confidence 3445677888999888887777888888753331 1 246788888999999999999999999964321
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHH
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKAR 502 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~ 502 (627)
-....+.+-+.|.+.++-++..|+-+...|....+ +. . .+++..+-+++.+.++-++.+|+.+|+.+...+. .
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~- 209 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DV-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L- 209 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HH-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H-
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HH-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H-
Confidence 12235567777788899999999999998865442 22 2 2689999999999999999999999999987541 1
Q ss_pred HHHcCChHHHHHhhccC---ChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 006877 503 AVRAGIVPPLMRFLKDA---GGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 503 l~~~g~v~~Lv~lL~~~---~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~ 579 (627)
.+..|+..+... ++-.+-.-+.++..++...+.. .....++.+...|++.++.+.-.|+.++..+....
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 344555555442 2333333333333333322111 12345667777788889999999999998886633
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 580 AEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 580 ~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
.. .. ..++..|..++.+.++.+|-.|...|..+.
T Consensus 282 ~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 282 AK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred HH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 22 11 234567777888888888888877666554
No 150
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.57 E-value=0.017 Score=52.31 Aligned_cols=212 Identities=14% Similarity=0.152 Sum_probs=144.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhccC-CcchHHHhhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHH
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVA 461 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls~~~~~~~~ 461 (627)
.++..++.+|..+-..+|.+|+.++.+++.. ++.... .+..|+-+++ +.........+.+++.++...+ .
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence 4678899999998899999999999999864 333222 2444555544 5566676677777877764321 1
Q ss_pred hhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhH
Q 006877 462 IGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGK 541 (627)
Q Consensus 462 i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~ 541 (627)
++ .+.+|.+..=..-|+++.+.+...+|..+....+. .-.+++.-+..++.+++..=+-.|+..+..+..+ .
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen---~ 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN---S 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT---T
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc---C
Confidence 11 13566666666678999999999999998863321 2234566688888877754444455555444432 2
Q ss_pred HHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 542 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 542 ~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
..-+ .-.+|.|..+|+.++.-+|..|+.+|.+++.-+|..+.. +..-+.=+.+.++-++++....|..+.
T Consensus 176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 2222 246899999999999999999999999999999875542 333444456667778888777776653
No 151
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.43 E-value=0.015 Score=66.43 Aligned_cols=234 Identities=17% Similarity=0.142 Sum_probs=156.0
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccC
Q 006877 343 AIDALLGKLANGN--------VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSIN 414 (627)
Q Consensus 343 ~i~~Lv~~L~s~~--------~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~ 414 (627)
.+..|...|.+.+ +.++..|+..|....-++. + ..+++.|..+|.+++..+++.|+.+|+.+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--N-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--C-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--C-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4455555554433 3455555555555432211 0 12467788888887777777788888766433
Q ss_pred CcchHHHhhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Q 006877 415 DSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFN 492 (627)
Q Consensus 415 ~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~n 492 (627)
..+.. ++..|+..+. +.+..++..++..|..+... +...++.+++.|.. .++-++..++.++.-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG--------RQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33222 3566666543 45678888888888766433 23577888888875 467777777777765
Q ss_pred hccCCCchHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHH-hcCCHHHHHHHHH
Q 006877 493 LSIYQGNKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVI-RTGSPRNRENAAA 570 (627)
Q Consensus 493 L~~~~~~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~~~~~A~~ 570 (627)
-.....|.. +|+.|++.+. +.+..++..|+..|+.+....+ ..++.++.+| +++++.+|..|+.
T Consensus 569 AyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555554432 4556666664 4667788889999988876432 3577777755 5688999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 571 VLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 571 ~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
+|..+|.+++. ..++..|..+..+.++.+++.|...|..+.
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 99999987752 125667777888889999999988888775
No 152
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.12 Score=46.73 Aligned_cols=215 Identities=15% Similarity=0.176 Sum_probs=147.3
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCCcch
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSINDSNK 418 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~~~k 418 (627)
+...+..+++.|...-|-+|.+|+..|..+++..++....+ +..|+.+++. .....-.....+++.++.-.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--- 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--- 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence 45688999999998889999999999999998877655444 3456666644 44444344466677776421
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 498 (627)
..++ .+.+|.+..=.+-|++.++.+...+|..+....+ .. -.+++.-+..++.+++..-+-.|+..+..|. +
T Consensus 102 Pe~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alG---e 173 (253)
T 2db0_A 102 PELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--ML--MASIVRDFMSMLSSKNREDKLTALNFIEAMG---E 173 (253)
T ss_dssp HHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC---T
T ss_pred HHHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHh---c
Confidence 1111 1234445555567899999999999988765432 11 1246677888888877665655665555554 4
Q ss_pred chHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC-hhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 499 NKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH-QEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 499 ~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
|..+-+ .-.+|.|..+|.+.+.-+...|+.+|.+++.. +.-|..+ ..-++-+...+..++......|..|..
T Consensus 174 n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 174 NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 444433 34789999999999999999999999999994 5444333 334555667778888887777776654
No 153
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.19 E-value=0.00065 Score=52.48 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=37.3
Q ss_pred CccCCCCcccccCcee-ccCcccccHHHHHHHHHhC-CCCCCCcccccc
Q 006877 249 DFRCPISLELMKDPVI-VSTGQTYERSCIQKWLDAG-HKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~-~~cg~t~~r~ci~~~~~~~-~~~CP~~~~~l~ 295 (627)
...|+||.+.+..-.. ..|+|.|...||.+||+.. ..+||.|+....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3579999988763332 3799999999999999853 378999998765
No 154
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.05 E-value=0.00061 Score=50.43 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=39.1
Q ss_pred CCccCCCCcccccCceeccCcc-----cccHHHHHHHHHh-CCCCCCCcccccc
Q 006877 248 DDFRCPISLELMKDPVIVSTGQ-----TYERSCIQKWLDA-GHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~-----t~~r~ci~~~~~~-~~~~CP~~~~~l~ 295 (627)
+.-.|.||++-..+|.+.||.. -|.+.|+.+|+.. ++.+||.|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457999998777887778653 6899999999984 6789999998764
No 155
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.01 E-value=0.00051 Score=55.29 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=38.4
Q ss_pred cCCCCcccccCce-eccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 251 RCPISLELMKDPV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 251 ~Cpic~~~m~dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
.|++|.-....-. .+||+|.||..|+..|...+..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 5888877665433 579999999999999998889999999988753
No 156
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.91 E-value=0.0048 Score=65.32 Aligned_cols=242 Identities=12% Similarity=0.088 Sum_probs=157.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhc--CCHHHHHHHhcC-------CC---HHHHHHHHHHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEA--GAIPLLVELLSS-------TD---PRTQEHAVTALLN 410 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~-------~~---~~~~~~A~~~L~n 410 (627)
..+.|+..|-+..|+++.-|+-.|+.+.+............ ...-.|+-+|.- +| .-+|+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 77889999999999999999999999886543110000111 223333333311 11 4589999999999
Q ss_pred hccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhh-hhCcHHHHHHHhccCCHHHHHHHHHH
Q 006877 411 LSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIG-AAGAIPALIRLLCDGTPRGKKDAATA 489 (627)
Q Consensus 411 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~a 489 (627)
+ .+-+.. ..++..++..+....++++..+.-.|.++ ...+. -.++++.++.-|.+.+++++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 642211 23444444455777899999999999988 11121 23678888888899999999999999
Q ss_pred HHHhccCCCchHHHHHcCChHHHHHhhccC-C-hhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHH
Q 006877 490 IFNLSIYQGNKARAVRAGIVPPLMRFLKDA-G-GGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNREN 567 (627)
Q Consensus 490 L~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~-~-~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~ 567 (627)
|..++ .++.... ++..+-+.|.+- + .......+..|+.|+..+.. .-.....+|.|..++++.-..+|..
T Consensus 323 LiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence 99998 2221111 222333333321 1 22356678888888887641 1122367999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHH-HhhhcCChHHHHHHHHHHH
Q 006877 568 AAAVLWAICTGDAEQLKIARELDAEEALK-ELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 568 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~-~l~~~~~~~~k~~A~~lL~ 615 (627)
++.+|..+. .+. +++.+. .++-..++.+++.+..+-+
T Consensus 395 VL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998877 222 222222 4556677778777776654
No 157
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.022 Score=56.29 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=124.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChhhH--HHHH-hc-CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCC----cch
Q 006877 347 LLGKLANGNVEEQRAAAGELRLLAKRNADNR--VCIA-EA-GAIPLLVELLSSTDPRTQEHAVTALLNLSIND----SNK 418 (627)
Q Consensus 347 Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r--~~i~-~~-g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~----~~k 418 (627)
+-+.|.|.+|..+.+|+..|..+........ .... .. ...+.+-+.+.+.|..++..++.++..++..- ..+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5588999999999999999988775433211 1111 12 34566777888999999999999998876431 112
Q ss_pred HH--HhhcCChHHHHHH-HccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 006877 419 GT--IVNAGAIPDIVDV-LKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSI 495 (627)
Q Consensus 419 ~~--i~~~g~i~~Lv~l-L~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~ 495 (627)
.. ..-..+++.|++- |.++...++..+..++..+........ ..+..++..+.+.+++++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 21 1234567777765 677788888888888776643321111 234666677788899999999999888754
Q ss_pred C--CCch-HHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcC
Q 006877 496 Y--QGNK-ARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASH 537 (627)
Q Consensus 496 ~--~~~~-~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~ 537 (627)
. .... ....-..+++.+..+|.+.++.++..|..++..+...
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 2 1111 1111123566778888999999999999999888774
No 158
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.73 E-value=0.15 Score=58.42 Aligned_cols=239 Identities=16% Similarity=0.104 Sum_probs=152.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHh-cCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL-SSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
..+..|...|...+......|+..|..+--++. +. .++..|+..+ ...+..+++.++..|+.+...
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------ 538 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG------ 538 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC------
Confidence 456666666665555444455555555432111 11 1345555554 345778888888888877543
Q ss_pred HhhcCChHHHHHHHcc-CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc-CCHHHHHHHHHHHHHhccCCC
Q 006877 421 IVNAGAIPDIVDVLKN-GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD-GTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~-~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL~~~~~ 498 (627)
....++.+++.|.. .++-++..++.++.--.... +...+|..|++.+.+ .+..++..|+.+|..+....+
T Consensus 539 --~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT------Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 539 --RQELADDLITKMLASDESLLRYGGAFTIALAYAGT------GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp --CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS------CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred --ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 23467888888875 56777777776664221111 112467777777654 467888999999998876643
Q ss_pred chHHHHHcCChHHHHHhhc-cCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 006877 499 NKARAVRAGIVPPLMRFLK-DAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICT 577 (627)
Q Consensus 499 ~~~~l~~~g~v~~Lv~lL~-~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~ 577 (627)
..++.++.+|. +.++.++..|..+|+.++...... .++..|..+++..++.++..|+.+|..+..
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 35677777664 578899999999999998643322 246677777888889999999999999887
Q ss_pred CCHHHH-HHHHHcCcHHHHHHhhhc--CChHHHHHHHHHHHHH
Q 006877 578 GDAEQL-KIARELDAEEALKELSES--GTDRAKRKAGSILELL 617 (627)
Q Consensus 578 ~~~~~~-~~~~~~g~i~~L~~l~~~--~~~~~k~~A~~lL~~l 617 (627)
+..+.. ..+. +....|.....+ .++.++-.|.-+...+
T Consensus 677 gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 677 QQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp TCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 654320 0111 133445666553 3566666666655555
No 159
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.51 E-value=0.00047 Score=68.58 Aligned_cols=48 Identities=21% Similarity=0.568 Sum_probs=37.6
Q ss_pred CCccCCCCcccccC----cee----ccCcccccHHHHHHHHHhCC----------CCCCCcccccc
Q 006877 248 DDFRCPISLELMKD----PVI----VSTGQTYERSCIQKWLDAGH----------KTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~d----Pv~----~~cg~t~~r~ci~~~~~~~~----------~~CP~~~~~l~ 295 (627)
....|+||...+.+ |-. ..|||.|...|+.+|+.... .+||.|+.+++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34579999988776 422 37999999999999998521 47999998875
No 160
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.46 E-value=0.17 Score=48.32 Aligned_cols=227 Identities=15% Similarity=0.142 Sum_probs=150.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHh-cCCHHHHHHHh-------cCC-----CHHHHHHHHHHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE-AGAIPLLVELL-------SST-----DPRTQEHAVTALL 409 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL-------~~~-----~~~~~~~A~~~L~ 409 (627)
.+..++..|.+ ++.++.|+.+|..--...++-.-.+=. -|.+..|++=+ ..+ ...-..+|+..|-
T Consensus 4 ~i~qli~~L~~--p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSS--PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSS--TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 34455555653 345677766665533222222222222 36666654422 211 1223356677777
Q ss_pred hhccCCcchHHHhhcCChHHHHHHHccCC-----HHHHHHHHHHHHHhcCCc--hhhHHhhhhCcHHHHHHHhccCCHHH
Q 006877 410 NLSINDSNKGTIVNAGAIPDIVDVLKNGS-----MEARENAAATLFSLSVID--ENKVAIGAAGAIPALIRLLCDGTPRG 482 (627)
Q Consensus 410 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~ 482 (627)
-++.+++.|..+.++.+.--|--+|...+ +-.|-.+.++++.|...+ +.-..+.+.+.+|..++.+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 77899999999999887666777776653 457888999999987554 34556667899999999999999999
Q ss_pred HHHHHHHHHHhccCCCchHHHHH--------cCChHHHHHhh-ccCChhhHHHHHHHHHHHhcChhhHHHHhh-------
Q 006877 483 KKDAATAIFNLSIYQGNKARAVR--------AGIVPPLMRFL-KDAGGGMVDEALAILAILASHQEGKTAIGQ------- 546 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~~~~~~l~~--------~g~v~~Lv~lL-~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~------- 546 (627)
+.-|.-++..+-.++.+-..+.. ..++..++.-+ .++++.+....+.+-..|+.++..+.++..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999998887776655432 12333344433 458889999999999999999999988764
Q ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006877 547 AEPIPVLMEVIRTGSPRNRENAAAVLWAI 575 (627)
Q Consensus 547 ~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L 575 (627)
.|.+.. ++ .+++.++..-...+.|+
T Consensus 242 d~tf~~---~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFAQ---VL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTHH---HH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHHH---HH-hcCHHHHHHHHHHHHhc
Confidence 232322 22 25666777666666554
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.32 E-value=0.093 Score=50.19 Aligned_cols=139 Identities=22% Similarity=0.178 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhccCCCchH-HHHH-cCChHHHHHhhccCCh------------hhHHHHHHHHHHHhcChhhHHHHh
Q 006877 480 PRGKKDAATAIFNLSIYQGNKA-RAVR-AGIVPPLMRFLKDAGG------------GMVDEALAILAILASHQEGKTAIG 545 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~~~~-~l~~-~g~v~~Lv~lL~~~~~------------~~~~~Al~~L~~L~~~~~~~~~i~ 545 (627)
++.++.|+.-|..=-..-++-. .+.. -|.+..|++=+.+..+ .-+..|++.|..+++|++.|..++
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl 94 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFL 94 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHH
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHH
Confidence 3446655544443222222333 3444 4778887765443221 124678889999999999999999
Q ss_pred hCCChHHHHHHHhcCC-----HHHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 546 QAEPIPVLMEVIRTGS-----PRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 546 ~~g~v~~Lv~lL~~~~-----~~~~~~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
+++..-.|..+|+..+ +..|-.+.+++..|... +++....+.+..++|..+.+++.|+.-.|..|.-++.-+-
T Consensus 95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 9999888999998754 34788899999998875 4567788889999999999999999999999999888654
No 162
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.25 E-value=0.2 Score=57.83 Aligned_cols=221 Identities=18% Similarity=0.208 Sum_probs=147.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC-CHHHHHHHHHHHHhhccCCcchHHH
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST-DPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
.++.++..+......++..|-..+..+...-+.+.. ...+|.|+..|.+. ....+..|+.++..|+... ..++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 567777777776778887777777777754333222 34579999999765 6889999999999998754 3444
Q ss_pred h--hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCc
Q 006877 422 V--NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGN 499 (627)
Q Consensus 422 ~--~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~ 499 (627)
. =...||.+.+.+-+..++++..|..++..++..-.|+.. ...||.|++.+.+++. ...++..|..-+...+-
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee
Confidence 4 356788888888888899999999999887654333322 2679999999988743 33344444443333332
Q ss_pred hHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh--CCChHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 006877 500 KARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRT-GSPRNRENAAAVLWAI 575 (627)
Q Consensus 500 ~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~--~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L 575 (627)
-.-.+ +=.+|.|..-|......+...++-++.|+|.--+.-..+.. ...+|.+-..... ..|++|+.|..++..|
T Consensus 245 ~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 245 TPATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp CHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred cchhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 21111 11356666666667778889999999999994333222221 2455665555554 5699999888777776
No 163
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.93 E-value=0.24 Score=57.95 Aligned_cols=253 Identities=13% Similarity=0.121 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhc------CCCHHHHHHHHHHHHhhccCCcchHHHhhc-----C
Q 006877 357 EEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS------STDPRTQEHAVTALLNLSINDSNKGTIVNA-----G 425 (627)
Q Consensus 357 ~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~-----g 425 (627)
..+..|...|..++.... ..+. .-.++.+...|. +.+...++.|+.+++.++..-.....-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 345666777777776433 1111 112344444454 567788999999999997532111100000 1
Q ss_pred ChH----HHHHHHccC---CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 006877 426 AIP----DIVDVLKNG---SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 426 ~i~----~Lv~lL~~~---~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 498 (627)
..+ .++..|.+. .+-+|..|++++..++..- ... .-...++.+++.|.+.+..++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 112 233334555 7889999999999987642 111 122567888888888889999999999999987422
Q ss_pred ---------chHHHHH--cCChHHHHHhhccCC---h--hhHHHHHHHHHHHhcChh--hHHHHhhCCChHHHHHHHh--
Q 006877 499 ---------NKARAVR--AGIVPPLMRFLKDAG---G--GMVDEALAILAILASHQE--GKTAIGQAEPIPVLMEVIR-- 558 (627)
Q Consensus 499 ---------~~~~l~~--~g~v~~Lv~lL~~~~---~--~~~~~Al~~L~~L~~~~~--~~~~i~~~g~v~~Lv~lL~-- 558 (627)
.+..+.. ..+++.|+.++.... . ...+.++.+|..++..-. ... .. ...++.|...+.
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHH
Confidence 1222221 234556666665431 0 122455666655544211 111 00 013344444443
Q ss_pred --c-CCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 559 --T-GSPRNRENAAAVLWAICTG-DAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 559 --~-~~~~~~~~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
+ .++..+..+..+|..++.. +++....+ ...+++.+..++++........+..++..+.+
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 2 2456667788888888776 43333333 33467888888877655555566666655543
No 164
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.92 E-value=0.14 Score=51.23 Aligned_cols=196 Identities=13% Similarity=0.135 Sum_probs=149.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHH----HHHhc-CCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCc
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRV----CIAEA-GAIPLLVELLSSTDPRTQEHAVTALLNLSINDS 416 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~----~i~~~-g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~ 416 (627)
+.+..|+..|..-+++.+..+......+.......+. ++... ..+..|+.-- +++++--++..+|.....++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhHH
Confidence 4788899999999999999999999998876554332 33321 1222222222 356666777788888888877
Q ss_pred chHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCc-hhhHHhhh-h--CcHHHHHHHhccCCHHHHHHHHHHHHH
Q 006877 417 NKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVID-ENKVAIGA-A--GAIPALIRLLCDGTPRGKKDAATAIFN 492 (627)
Q Consensus 417 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~-~~~~~i~~-~--g~i~~Lv~lL~~~~~~~~~~a~~aL~n 492 (627)
....+...+.+..+.+....++-++...|..++..|-..+ ........ . .++...-.+|.+++--++..++..|+.
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge 235 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 7777778788889999999999999999999998774332 22222222 2 567778889999999999999999999
Q ss_pred hccCCCchHHHHH----cCChHHHHHhhccCChhhHHHHHHHHHHHhcChh
Q 006877 493 LSIYQGNKARAVR----AGIVPPLMRFLKDAGGGMVDEALAILAILASHQE 539 (627)
Q Consensus 493 L~~~~~~~~~l~~----~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~ 539 (627)
|..+..|...|.. ..-+..++.+|.+.+..++-.|..++.-...+|.
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 9999988886653 3458899999999999999999999998888654
No 165
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.88 E-value=0.2 Score=48.80 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=122.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcC-CHHHHHHHhcCCCHHHHHHHHHHHHhhcc---CCcchHHH
Q 006877 346 ALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAG-AIPLLVELLSSTDPRTQEHAVTALLNLSI---NDSNKGTI 421 (627)
Q Consensus 346 ~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g-~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~---~~~~k~~i 421 (627)
.+...|.+.|+..+..|+..|......+++ ..+...+ .++.+.--+.+.|..+...++.+|..+.. +.+++-.-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 456666778899999999988887654432 2222222 12322223346788888888888877632 11111111
Q ss_pred hh-cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCch
Q 006877 422 VN-AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNK 500 (627)
Q Consensus 422 ~~-~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~ 500 (627)
.+ .-.+|.|++-+....+.+|+.+-.++..+... ......++.+++-+++.+.+.+..++..+..+....+..
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 11 33688999999888888998888877666421 112346778888888889999999999888886532222
Q ss_pred HHHHHcCCh---HHHHHhhccCChhhHHHHHHHHHHHhcC
Q 006877 501 ARAVRAGIV---PPLMRFLKDAGGGMVDEALAILAILASH 537 (627)
Q Consensus 501 ~~l~~~g~v---~~Lv~lL~~~~~~~~~~Al~~L~~L~~~ 537 (627)
...++ +.+..++.+.+..++..|+.++..+-.+
T Consensus 202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 24468 9999999999999999999999877654
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.63 Score=45.59 Aligned_cols=189 Identities=15% Similarity=0.094 Sum_probs=122.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCCc---chHHHh-h-cCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch---
Q 006877 386 IPLLVELLSSTDPRTQEHAVTALLNLSINDS---NKGTIV-N-AGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--- 457 (627)
Q Consensus 386 i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~---~k~~i~-~-~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~--- 457 (627)
+| |-.-|.+.+...|..|+..|..+..... ...... . ....+.+-..+.+.+..+...++.++..+...-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 5577889999999999999888754321 112211 1 2345566677778889999999988887753211
Q ss_pred -hh--HHhhhhCcHHHHHHH-hccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHH
Q 006877 458 -NK--VAIGAAGAIPALIRL-LCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAI 533 (627)
Q Consensus 458 -~~--~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~ 533 (627)
.+ ........++.|+.- +.++...++..|..++..++........ +++.++..+.+.++.++..++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11 112223567888865 6777788888888888777643322222 23556667788899999999998887
Q ss_pred HhcChhh----HHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH
Q 006877 534 LASHQEG----KTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE 581 (627)
Q Consensus 534 L~~~~~~----~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~ 581 (627)
+...-.. -...+. .+++.+..++.+.++.+|..|..++..+...-+.
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 7653111 111111 2455677788889999999999999998876543
No 167
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.98 E-value=0.51 Score=47.04 Aligned_cols=136 Identities=10% Similarity=0.120 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHc--CChHHHHHhhccCChhhHHHHHHHHHHHhcChh---hHHHHhhCCChHHH
Q 006877 479 TPRGKKDAATAIFNLSIYQGNKARAVRA--GIVPPLMRFLKDAGGGMVDEALAILAILASHQE---GKTAIGQAEPIPVL 553 (627)
Q Consensus 479 ~~~~~~~a~~aL~nL~~~~~~~~~l~~~--g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~---~~~~i~~~g~v~~L 553 (627)
.+..+..++++++|+-.++..+..+... .+++.+...+.+.+..++..+..++.|++.... ...... .++..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~--~ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKA--QCLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHH--HHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHH--HHHHHH
Confidence 4666888999999999999888877753 345555555555677888888889999987311 111111 134445
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhc-CChHHHHHHHHHHHH
Q 006877 554 MEVIRT-GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES-GTDRAKRKAGSILEL 616 (627)
Q Consensus 554 v~lL~~-~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~-~~~~~k~~A~~lL~~ 616 (627)
..+++. .+.+....+..+|.+|...+++..+.....|+-..+-.+... ..+++.+.|..+|..
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 555554 467888889999999998887766766667777666666655 467788888877754
No 168
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.83 E-value=0.83 Score=53.37 Aligned_cols=219 Identities=11% Similarity=0.086 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhChhhHHHHH----hcCCHHH----HHHHhcCC---CHHHHHHHHHHHHhhccCCcchHHH
Q 006877 353 NGNVEEQRAAAGELRLLAKRNADNRVCIA----EAGAIPL----LVELLSST---DPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 353 s~~~~~~~~a~~~L~~L~~~~~~~r~~i~----~~g~i~~----Lv~lL~~~---~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
+.+|..+..|+..+..++.........+. .....+. ++..|.++ ++.+|..|+++++.++..- ....
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 56788888999999999743210000000 0012222 33345666 8999999999999998642 1111
Q ss_pred hhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch---------hhHHhhhh--CcHHHHHHHhccCC---HH--HHHH
Q 006877 422 VNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE---------NKVAIGAA--GAIPALIRLLCDGT---PR--GKKD 485 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~---------~~~~i~~~--g~i~~Lv~lL~~~~---~~--~~~~ 485 (627)
-...++.++..|.+.+..++..|+.+|.+++...+ .+..+... ..++.|+.++.... .+ ....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23457788888888889999999999999886422 23334332 55666667776641 11 2234
Q ss_pred HHHHHHHhccC-CCchHHHHHcCChHHHHHhhcc-----CChhhHHHHHHHHHHHhcC--hhhHHHHhhCCChHHHHHHH
Q 006877 486 AATAIFNLSIY-QGNKARAVRAGIVPPLMRFLKD-----AGGGMVDEALAILAILASH--QEGKTAIGQAEPIPVLMEVI 557 (627)
Q Consensus 486 a~~aL~nL~~~-~~~~~~l~~~g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~L~~~--~~~~~~i~~~g~v~~Lv~lL 557 (627)
+..+|..++.. .+...... ..+++.|...+.. .+......++.+++.++.. ++....+. ...+|.+..+|
T Consensus 573 l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL 650 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHH
Confidence 55555554331 11111111 1234455554432 3445666678888877764 23322222 24677777778
Q ss_pred hcCCHHHHHHHHHHHHHHh
Q 006877 558 RTGSPRNRENAAAVLWAIC 576 (627)
Q Consensus 558 ~~~~~~~~~~A~~~L~~L~ 576 (627)
........+.+..++..+.
T Consensus 651 ~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHH
Confidence 7655555666666655544
No 169
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.63 E-value=0.45 Score=47.43 Aligned_cols=173 Identities=13% Similarity=0.128 Sum_probs=104.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHH----HHhcC-CCHHHHHHHHHHHHhhccCCcc
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLV----ELLSS-TDPRTQEHAVTALLNLSINDSN 417 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv----~lL~~-~~~~~~~~A~~~L~nLs~~~~~ 417 (627)
.+..+.+.+ +=+.+.+.-++..+|.+.. ++.....+.+.+.-..++ ..+.. ..+..+-.+++++.|+..++.+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 455555555 3333455566777777664 444445555443333333 33332 3566788999999999988888
Q ss_pred hHHHhhc--CChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhh-hCcHHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 006877 418 KGTIVNA--GAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCD-GTPRGKKDAATAIFNL 493 (627)
Q Consensus 418 k~~i~~~--g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~aL~nL 493 (627)
+..+... .+++.+...+.+.+..++..++.+++|++.........-. ...+..+..++.. .+.+....++.||++|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 8877742 2444444444556788999999999999864311111111 1234444455543 4788999999999999
Q ss_pred ccCCCchHHHHHc-CChHHHHHhhc
Q 006877 494 SIYQGNKARAVRA-GIVPPLMRFLK 517 (627)
Q Consensus 494 ~~~~~~~~~l~~~-g~v~~Lv~lL~ 517 (627)
...+.....+.+. |+-..+-+...
T Consensus 262 ~~~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 262 ISDDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp HTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred HhCChhHHHHHHHcCHHHHHHHHHh
Confidence 9876555555543 43333333333
No 170
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.51 E-value=0.014 Score=48.03 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.0
Q ss_pred CCccCCCCcc-cccCcee--ccCcccccHHHHHHHHH
Q 006877 248 DDFRCPISLE-LMKDPVI--VSTGQTYERSCIQKWLD 281 (627)
Q Consensus 248 ~~f~Cpic~~-~m~dPv~--~~cg~t~~r~ci~~~~~ 281 (627)
++..|++|.+ +..+||. +.|||+||+.|++.|+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4678999996 4789998 89999999999998543
No 171
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.20 E-value=1.5 Score=41.77 Aligned_cols=176 Identities=17% Similarity=0.155 Sum_probs=108.0
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC----C-------CHHHHHHHHHHHHhhccC
Q 006877 347 LLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS----T-------DPRTQEHAVTALLNLSIN 414 (627)
Q Consensus 347 Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~A~~~L~nLs~~ 414 (627)
.++.|.+.. .+...+.+..|+.....++..+..-...+|+..|+.+|.. + +...+..++.+|..+..+
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~ 84 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 84 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC
Confidence 344554432 2222344555555445555444322256888888888753 1 456778888999888776
Q ss_pred CcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--h-hHHhhh----------hCcHHHHHHHhccC-C
Q 006877 415 DSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--N-KVAIGA----------AGAIPALIRLLCDG-T 479 (627)
Q Consensus 415 ~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~--~-~~~i~~----------~g~i~~Lv~lL~~~-~ 479 (627)
..+...++ .++++..|+..|.+..+.++..++.+|..++..++ + ...+.+ ..-+.++++.+.++ +
T Consensus 85 ~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~ 164 (233)
T 2f31_A 85 KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS 164 (233)
T ss_dssp HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSC
T ss_pred hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCCh
Confidence 66666666 57789999999999999999999998888876653 3 333322 24567788888753 4
Q ss_pred HHHHHHHHHHHHHhccCCCc---hH----HHHHcCChHHHHHhhccCChh
Q 006877 480 PRGKKDAATAIFNLSIYQGN---KA----RAVRAGIVPPLMRFLKDAGGG 522 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~~---~~----~l~~~g~v~~Lv~lL~~~~~~ 522 (627)
.+.+..++..+-.|...+++ |. .+...|+.+.+-.+=...++.
T Consensus 165 ~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~ 214 (233)
T 2f31_A 165 IALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED 214 (233)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence 56666666666666665553 22 344556554444332224443
No 172
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.60 E-value=1.8 Score=44.54 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=113.6
Q ss_pred HHHHHhcCCC-HHHHHHHHHHHHHHhhhChhhH-HHHHhcCCHHHHHHHhcC-----------CCHHHHHHHHHHHHhhc
Q 006877 346 ALLGKLANGN-VEEQRAAAGELRLLAKRNADNR-VCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLS 412 (627)
Q Consensus 346 ~Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~nLs 412 (627)
..++.|.++. .+.....+..|+.-...++..+ ..|. .+|+..|+.+|.. .+...+...+.+|..+-
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3455555443 2333445666766555555444 3344 6788999988842 24577888899999887
Q ss_pred cCCcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--h-hHHhhh----------hCcHHHHHHHhccC
Q 006877 413 INDSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--N-KVAIGA----------AGAIPALIRLLCDG 478 (627)
Q Consensus 413 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~--~-~~~i~~----------~g~i~~Lv~lL~~~ 478 (627)
.+..+...++ ....+..|+..|.+..+.++..++.+|..++..+. + ...+.+ ..-+..+++.|.++
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~ 228 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 228 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc
Confidence 7666666666 57789999999999999999999999988876653 2 333332 24578888888874
Q ss_pred -CHHHHHHHHHHHHHhccCCCc---hH----HHHHcCChHHHHHhhcc-CChh
Q 006877 479 -TPRGKKDAATAIFNLSIYQGN---KA----RAVRAGIVPPLMRFLKD-AGGG 522 (627)
Q Consensus 479 -~~~~~~~a~~aL~nL~~~~~~---~~----~l~~~g~v~~Lv~lL~~-~~~~ 522 (627)
+.+.+..++..+-.+...+++ |. .+...|+.+.+-. |.. .++.
T Consensus 229 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~ 280 (383)
T 3eg5_B 229 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENED 280 (383)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChh
Confidence 566666666666666665543 22 3445666555554 554 3443
No 173
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.56 E-value=0.05 Score=52.61 Aligned_cols=67 Identities=19% Similarity=0.083 Sum_probs=43.0
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 006877 512 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDA 591 (627)
Q Consensus 512 Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~ 591 (627)
|..++.+++..+...++..+ ..+.|..++...+..+|..++..+.
T Consensus 175 l~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------------ 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS------------------ 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC------------------
T ss_pred HHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC------------------
Confidence 33455556666655555431 3456777777778888888877652
Q ss_pred HHHHHHhhhcCChHHHHHHHHHH
Q 006877 592 EEALKELSESGTDRAKRKAGSIL 614 (627)
Q Consensus 592 i~~L~~l~~~~~~~~k~~A~~lL 614 (627)
.+.|..| ++.+..++..|...|
T Consensus 220 ~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHc-cCCCHHHHHHHHHHh
Confidence 3455556 778888888876543
No 174
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.36 E-value=3.6 Score=41.01 Aligned_cols=155 Identities=17% Similarity=0.045 Sum_probs=121.2
Q ss_pred HhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC-chH----HHHHcCChHHHHHhhcc-CChhhHHHHHHHHHHH
Q 006877 461 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG-NKA----RAVRAGIVPPLMRFLKD-AGGGMVDEALAILAIL 534 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~-~~~----~l~~~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L 534 (627)
.+...+.+..|+..|..-+-+.++++..+..++..... ++. .+.. --..|.-++.. +++++.-.+-.+|..+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 34556889999999998899999999999999987543 222 2332 12222223322 4677778899999999
Q ss_pred hcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---cHHHHHHhhhcCChHHHHHHH
Q 006877 535 ASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELD---AEEALKELSESGTDRAKRKAG 611 (627)
Q Consensus 535 ~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~l~~~~~~~~k~~A~ 611 (627)
..++.....+...+.+-.+.++++.++-++-..|..++-.|-......+......+ .....-.|+.+++-.+|+.+.
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 99998888888888899999999999999999999999988777777666666543 466777899999999999999
Q ss_pred HHHHHH
Q 006877 612 SILELL 617 (627)
Q Consensus 612 ~lL~~l 617 (627)
.+|.-+
T Consensus 231 KLLgel 236 (341)
T 1upk_A 231 KLLGEL 236 (341)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999866
No 175
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.32 E-value=0.066 Score=54.19 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=51.5
Q ss_pred CccCCCCcccccCcee-ccCccc--ccHHHHHHHHH-hCCCCCCCccccccCCCCCccHHHHhhhHH
Q 006877 249 DFRCPISLELMKDPVI-VSTGQT--YERSCIQKWLD-AGHKTCPKTQQTLLHTALTPNYVLKSLIAL 311 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~-~~cg~t--~~r~ci~~~~~-~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 311 (627)
.+.||++...|..|+- ..|.|. |+...+..... .+...||.|++.+....+..+..+...+..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 5899999999999997 589997 77776655544 356899999999998999988888777654
No 176
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.04 E-value=1.2 Score=43.35 Aligned_cols=177 Identities=12% Similarity=0.097 Sum_probs=109.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccCCHHHHHHHHHHHHHhccC---CCchHHH
Q 006877 429 DIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDGTPRGKKDAATAIFNLSIY---QGNKARA 503 (627)
Q Consensus 429 ~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~---~~~~~~l 503 (627)
.+...|-+.+..-+..++..|..... .+...+... ..++.+.-.+.+.+..+...++.+|..+... .+.+..-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~--~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLAD--TSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHH--HCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhh--hChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 34444444555555555555544321 112222211 1233333334466788877777777765321 1111111
Q ss_pred HH-cCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHH
Q 006877 504 VR-AGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ 582 (627)
Q Consensus 504 ~~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~ 582 (627)
.+ .-++|.|++-+-+....+++.+-.++..++.... -...++.+++-+.+.+.+.|+.++..+..+-...+..
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 12 2368999999988888888888888877764211 1124666777778889999999998888875533222
Q ss_pred HHHHHHcCcH---HHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 583 LKIARELDAE---EALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 583 ~~~~~~~g~i---~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
..+.+ +.+..++.+.+..++..|..++..+-
T Consensus 202 -----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 202 -----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp -----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred -----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 23467 89999999999999999988777553
No 177
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.01 E-value=5 Score=46.65 Aligned_cols=173 Identities=13% Similarity=0.067 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHh---c--cCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHH
Q 006877 437 GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL---C--DGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPP 511 (627)
Q Consensus 437 ~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~--~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~ 511 (627)
.++..++.++.++..++..-.... ...++.++.++ . +.++.++..+++++..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 466788999999998875432111 23444444433 2 2478899999999999886322111111 134556
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhh--CCChHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCH-HHHHHH
Q 006877 512 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQ--AEPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDA-EQLKIA 586 (627)
Q Consensus 512 Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~--~g~v~~Lv~lL~~~--~~~~~~~A~~~L~~L~~~~~-~~~~~~ 586 (627)
|+..| + +.+...|+.++.+++.. .+..+.. ...+..+..++..+ +...+..+..++..+...-+ +.....
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666 3 67899999999999953 3333432 24566667777763 46788899999888876422 222211
Q ss_pred HH---cCcHHHHHHhhhcC--ChHHHHHHHHHHHHHHh
Q 006877 587 RE---LDAEEALKELSESG--TDRAKRKAGSILELLQR 619 (627)
Q Consensus 587 ~~---~g~i~~L~~l~~~~--~~~~k~~A~~lL~~l~~ 619 (627)
.. .-.+..+..++++. ++..+......+..|..
T Consensus 626 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 626 LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 11 11233333444443 44455666666666643
No 178
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.88 E-value=0.079 Score=50.92 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=38.0
Q ss_pred CccCCCCcccccCceec-cCcccccHHHHHHHHHh-CCCCCCCccccccCC
Q 006877 249 DFRCPISLELMKDPVIV-STGQTYERSCIQKWLDA-GHKTCPKTQQTLLHT 297 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~-~cg~t~~r~ci~~~~~~-~~~~CP~~~~~l~~~ 297 (627)
-..|.+|.++...-+.- .|++.|...|+.+|+.. ++..||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 34699999988644432 49999999999999975 346899999876543
No 179
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.31 E-value=4.4 Score=41.74 Aligned_cols=176 Identities=18% Similarity=0.181 Sum_probs=109.0
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-----------CCHHHHHHHHHHHHhhccC
Q 006877 347 LLGKLANGN-VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----------TDPRTQEHAVTALLNLSIN 414 (627)
Q Consensus 347 Lv~~L~s~~-~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~~L~nLs~~ 414 (627)
.++.|.+.. .+...+.+..|+.....++..+..-...+|+..|+.+|.. .+...+..++.+|..+..+
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~ 88 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN 88 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC
Confidence 445555443 2222334555555555555444322236788888888742 1456778889999888776
Q ss_pred CcchHHHh-hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCch--h-hHHhhh----------hCcHHHHHHHhccC-C
Q 006877 415 DSNKGTIV-NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDE--N-KVAIGA----------AGAIPALIRLLCDG-T 479 (627)
Q Consensus 415 ~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~--~-~~~i~~----------~g~i~~Lv~lL~~~-~ 479 (627)
..+...++ .++++..|+..|.+..+.++..++.+|..++..+. + ...+.+ ..-+..+++.+.++ +
T Consensus 89 ~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~ 168 (386)
T 2bnx_A 89 KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTS 168 (386)
T ss_dssp HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSC
T ss_pred HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCCh
Confidence 66666666 57789999999998889999999988888877653 3 333222 24567788888754 5
Q ss_pred HHHHHHHHHHHHHhccCCCc-------hHHHHHcCChHHHHHhhcc-CChhh
Q 006877 480 PRGKKDAATAIFNLSIYQGN-------KARAVRAGIVPPLMRFLKD-AGGGM 523 (627)
Q Consensus 480 ~~~~~~a~~aL~nL~~~~~~-------~~~l~~~g~v~~Lv~lL~~-~~~~~ 523 (627)
.+.+..++..+-.|...+++ |..+...|+.+.+ .-|.. .++.+
T Consensus 169 ~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~~~~~L 219 (386)
T 2bnx_A 169 IALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREIENEDM 219 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhccCChhH
Confidence 56666666666666665554 2234456655554 44444 44444
No 180
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.17 E-value=0.12 Score=52.20 Aligned_cols=64 Identities=11% Similarity=0.203 Sum_probs=52.2
Q ss_pred CCccCCCCcccccCcee-ccCccc--ccHHHHHHHHH-hCCCCCCCccccccCCCCCccHHHHhhhHH
Q 006877 248 DDFRCPISLELMKDPVI-VSTGQT--YERSCIQKWLD-AGHKTCPKTQQTLLHTALTPNYVLKSLIAL 311 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~-~~cg~t--~~r~ci~~~~~-~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~ 311 (627)
=.+.||++...|..|+- ..|.|. |+...+..... .+...||.|++.+....+..+..+...+..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 35789999999999997 589997 88776666554 356899999999998889888888777654
No 181
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.15 E-value=2.8 Score=48.72 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=124.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHh---cCCCHHHHHHHHHHHHhhccC-CcchHHHhhcCCh
Q 006877 352 ANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL---SSTDPRTQEHAVTALLNLSIN-DSNKGTIVNAGAI 427 (627)
Q Consensus 352 ~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~~~~~~~~~~A~~~L~nLs~~-~~~k~~i~~~g~i 427 (627)
.+.+|..+..++..|..++....... ...++.++..+ ..+++.++..+++++..++.. ..+. .. -...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~-l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VM-INSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HH-HTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HH-HHHHH
Confidence 45678899999999999986533211 23345555544 335788999999999998753 1111 22 24678
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhh--CcHHHHHHHhccC--CHHHHHHHHHHHHHhccCCC--chH
Q 006877 428 PDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAA--GAIPALIRLLCDG--TPRGKKDAATAIFNLSIYQG--NKA 501 (627)
Q Consensus 428 ~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~--~~~~~~~a~~aL~nL~~~~~--~~~ 501 (627)
+.++..|.+ +.++..|+.+|.+++.. .+..+... ..+..|..++.++ +...+..+..++..++...+ ...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888855 78899999999999842 33333322 3444555566653 46778888888888876432 222
Q ss_pred HHHHcCChHHHHHhhc----cC-ChhhHH---HHHHHHHHHhcC-----hh---------------hHHHH--hhCCChH
Q 006877 502 RAVRAGIVPPLMRFLK----DA-GGGMVD---EALAILAILASH-----QE---------------GKTAI--GQAEPIP 551 (627)
Q Consensus 502 ~l~~~g~v~~Lv~lL~----~~-~~~~~~---~Al~~L~~L~~~-----~~---------------~~~~i--~~~g~v~ 551 (627)
..+ ..+++++...+. .. +++... ..+.+|..+... +. ....+ ......+
T Consensus 608 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 222 234555555443 21 333333 333344333321 00 00001 1123455
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHHHhc
Q 006877 552 VLMEVIRT--GSPRNRENAAAVLWAICT 577 (627)
Q Consensus 552 ~Lv~lL~~--~~~~~~~~A~~~L~~L~~ 577 (627)
.+..++.. .++.+.+.++.++..+..
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 55566643 467888888888887654
No 182
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.78 E-value=3.5 Score=43.17 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV 422 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~ 422 (627)
....++... +++..+.+-|+.-|....++-++... .++..++.+....|..+|..|+..|-.++.+ ++-..
T Consensus 30 ~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-- 100 (507)
T 3u0r_A 30 AYQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-- 100 (507)
T ss_dssp HHHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh--
Confidence 445555544 45688888999999999988877543 3467899999999999999999999999988 44333
Q ss_pred hcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHH
Q 006877 423 NAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFN 492 (627)
Q Consensus 423 ~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~n 492 (627)
+.+.|+++|.++++.-....-.+|..|-..+ ..+.+..|..-+.++++.+++.++..|..
T Consensus 101 ---iaDvL~QlLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 101 ---VADILTQLLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp ---HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 3677899999887665555555555443222 12566667766667788888888887764
No 183
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.59 E-value=5.7 Score=46.17 Aligned_cols=212 Identities=15% Similarity=0.042 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHH---c--cCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHH
Q 006877 396 TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVL---K--NGSMEARENAAATLFSLSVIDENKVAIGAAGAIPA 470 (627)
Q Consensus 396 ~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~ 470 (627)
.+...++.|+.++..++..-.... ...++.++.++ . +..+.++..+++++..++..-...... -..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~-l~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY-IPPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C-HHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHH
Confidence 577889999999999976422111 13344455444 3 237889999999999887432111110 1145666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHH--cCChHHHHHhhcc--CChhhHHHHHHHHHHHhcC-h-hhHHHH
Q 006877 471 LIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR--AGIVPPLMRFLKD--AGGGMVDEALAILAILASH-Q-EGKTAI 544 (627)
Q Consensus 471 Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~--~g~v~~Lv~lL~~--~~~~~~~~Al~~L~~L~~~-~-~~~~~i 544 (627)
|+..| + +.++..|+.++.+++..- +..+.. .+++..|..++.. .+...+..++.+++.++.. + +.....
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666 2 678999999999999532 233332 3556666777765 3456677778888877663 1 333222
Q ss_pred hhCCChHHHHHHH----hcC--CHHHHHHHHHHHHHHhcC-----C-----------HHHHHHHHHcCcHHHHHHhhhcC
Q 006877 545 GQAEPIPVLMEVI----RTG--SPRNRENAAAVLWAICTG-----D-----------AEQLKIARELDAEEALKELSESG 602 (627)
Q Consensus 545 ~~~g~v~~Lv~lL----~~~--~~~~~~~A~~~L~~L~~~-----~-----------~~~~~~~~~~g~i~~L~~l~~~~ 602 (627)
.. ..++.++..+ +.. ++..+......|..|+.- . ++.... ....+++.+..++...
T Consensus 626 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~ 703 (971)
T 2x1g_F 626 LD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMW 703 (971)
T ss_dssp HH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhc
Confidence 22 2334444433 332 333444445555444321 0 001111 1234777777777653
Q ss_pred --ChHHHHHHHHHHHHHHh
Q 006877 603 --TDRAKRKAGSILELLQR 619 (627)
Q Consensus 603 --~~~~k~~A~~lL~~l~~ 619 (627)
++.+.+.+.++++.+..
T Consensus 704 ~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 67899999999888654
No 184
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.92 E-value=6.3 Score=45.71 Aligned_cols=174 Identities=14% Similarity=0.081 Sum_probs=106.4
Q ss_pred ccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHh---ccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHH
Q 006877 435 KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL---CDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPP 511 (627)
Q Consensus 435 ~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~ 511 (627)
.+.++..++.++.++..++..-.. .....++.++..+ .++++.++..+++++..++..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 445778899999999998754321 1123455555544 23467889999999998886422112222 467888
Q ss_pred HHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhC--CChHHHHHHHhcC--CHHHHHHHHHHHHHHhcCCH-HHHHHH
Q 006877 512 LMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA--EPIPVLMEVIRTG--SPRNRENAAAVLWAICTGDA-EQLKIA 586 (627)
Q Consensus 512 Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~--g~v~~Lv~lL~~~--~~~~~~~A~~~L~~L~~~~~-~~~~~~ 586 (627)
|+..|.+ +.++..|+.+|.+++.. .+..+... ..+..|..++..+ +...+..+..++..+...-+ +.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 78999999999999953 22223211 2344455555543 46788888999998876542 333333
Q ss_pred HHcCcHHHHHHhh----hcC-ChHHHHHHHHHHHHHH
Q 006877 587 RELDAEEALKELS----ESG-TDRAKRKAGSILELLQ 618 (627)
Q Consensus 587 ~~~g~i~~L~~l~----~~~-~~~~k~~A~~lL~~l~ 618 (627)
.+ .+++++...+ +++ ++..+.....++..+.
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 22 2444444433 333 6666666666666554
No 185
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=89.74 E-value=3.2 Score=39.43 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=93.9
Q ss_pred cCChHHHHHHHcc----C-------CHHHHHHHHHHHHHhcCCchhhHHhhhh-CcHHHHHHHhccCCHHHHHHHHHHHH
Q 006877 424 AGAIPDIVDVLKN----G-------SMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDGTPRGKKDAATAIF 491 (627)
Q Consensus 424 ~g~i~~Lv~lL~~----~-------~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~ 491 (627)
.+|+..|+.+|.. + +.+....++.+|..+..+..+...+... +++..|+..|.+.++.++..++..|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4667777777642 1 2455678888898887777666666665 88999999999889999999999999
Q ss_pred HhccCCC--c-hHHHHH----------cCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhh-------HHHHhhCCCh
Q 006877 492 NLSIYQG--N-KARAVR----------AGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEG-------KTAIGQAEPI 550 (627)
Q Consensus 492 nL~~~~~--~-~~~l~~----------~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~-------~~~i~~~g~v 550 (627)
.+|..++ + ...+.+ ..-..++++.|.. .+.+....++..+-.+...++. |.++...| +
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l 200 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-L 200 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-H
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-h
Confidence 9988764 5 444332 2346778888864 4445556666666666665442 34455554 5
Q ss_pred HHHHHHHhc-CCHHHH
Q 006877 551 PVLMEVIRT-GSPRNR 565 (627)
Q Consensus 551 ~~Lv~lL~~-~~~~~~ 565 (627)
..+++-++. +++...
T Consensus 201 ~~il~~l~~~~~~~L~ 216 (233)
T 2f31_A 201 HQVLQELREIENEDMK 216 (233)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhccCCHHHH
Confidence 555565554 445443
No 186
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.69 E-value=1.4 Score=47.11 Aligned_cols=186 Identities=16% Similarity=0.095 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHh-hcCChHHHHHHH
Q 006877 356 VEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVL 434 (627)
Q Consensus 356 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL 434 (627)
..+++.|++.|..+ .+-+.. ..++..|+..+..+..+++.-++-.|..+ . ..+. -.++++.++.-|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~-----DLL~~Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K-----EFVEDKDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G-----GGCCCHHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H-----HHHHHHHHHHHHHHhhc
Confidence 45788888888888 654433 34555666666788899999988888888 2 1111 255677888888
Q ss_pred ccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCC--HHHHHHHHHHHHHhccCCCchHHHHHcCChHHH
Q 006877 435 KNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGT--PRGKKDAATAIFNLSIYQGNKARAVRAGIVPPL 512 (627)
Q Consensus 435 ~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~L 512 (627)
.+.+++++..||.+|.-++ ..+. -...+..+.+.|.+.+ .......+..|..|+..+.+. -.....||.|
T Consensus 309 ~D~DDDVRAVAAetLiPIA-~p~~-----l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL 380 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFP-ITDS-----LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDI 380 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSC-CSST-----HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGT
T ss_pred CCcccHHHHHHHHHhhhhc-chhh-----HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHH
Confidence 8899999999999998887 1110 1134455555555422 122233444555555544311 0113789999
Q ss_pred HHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHH-HHhcCCHHHHHHHHHHH
Q 006877 513 MRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLME-VIRTGSPRNRENAAAVL 572 (627)
Q Consensus 513 v~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~-lL~~~~~~~~~~A~~~L 572 (627)
.++|.++-..++..++.+|..+. ...++..+.+ +|-..++++++.+..+.
T Consensus 381 ~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 381 FPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999988899999988887776 1123333333 33346677777766655
No 187
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.51 E-value=6.6 Score=40.31 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=94.1
Q ss_pred cCChHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCchhhHHhhhh-CcHHHHHHHhccCCHHHHHHHHHHHH
Q 006877 424 AGAIPDIVDVLKN-----------GSMEARENAAATLFSLSVIDENKVAIGAA-GAIPALIRLLCDGTPRGKKDAATAIF 491 (627)
Q Consensus 424 ~g~i~~Lv~lL~~-----------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~~aL~ 491 (627)
.+|+..|+.+|.. .+.+....++.+|..+..+..+...+... .++..|+..+.+..+.++..++..|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5678888888852 12466778889998887777666666665 88999999999999999999999999
Q ss_pred HhccCCC--c-hHHHHH----------cCChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhh-------HHHHhhCCCh
Q 006877 492 NLSIYQG--N-KARAVR----------AGIVPPLMRFLKD-AGGGMVDEALAILAILASHQEG-------KTAIGQAEPI 550 (627)
Q Consensus 492 nL~~~~~--~-~~~l~~----------~g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~-------~~~i~~~g~v 550 (627)
.+|..++ + ...+++ ..-+..++..|.. .+.+....++..+-.+...++. |.++...| +
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l 266 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-L 266 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-H
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-h
Confidence 9998764 3 444332 2347888888876 4556666666666666665432 34444554 5
Q ss_pred HHHHHHHhc
Q 006877 551 PVLMEVIRT 559 (627)
Q Consensus 551 ~~Lv~lL~~ 559 (627)
..++.-|+.
T Consensus 267 ~~il~~lr~ 275 (383)
T 3eg5_B 267 HQVLQELRE 275 (383)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 555555664
No 188
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.87 E-value=4.3 Score=47.53 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHhhccCCcc-hHHHhhcCChHHHHHHHccC-----CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHH
Q 006877 396 TDPRTQEHAVTALLNLSINDSN-KGTIVNAGAIPDIVDVLKNG-----SMEARENAAATLFSLSVIDENKVAIGAAGAIP 469 (627)
Q Consensus 396 ~~~~~~~~A~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~ 469 (627)
.+...++.++++++.++..... ...-.-..+++.|+.++... ...++..++++++..+..-...... =...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHH
Confidence 5789999999999999876332 22222244677788877531 2334556778887654321111111 013444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHH------cCChHHHHHhh----ccCChhhHHHHHHHHHHHhcC
Q 006877 470 ALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVR------AGIVPPLMRFL----KDAGGGMVDEALAILAILASH 537 (627)
Q Consensus 470 ~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~------~g~v~~Lv~lL----~~~~~~~~~~Al~~L~~L~~~ 537 (627)
.|++.+...+++++..|++++.+||.. .+..++. ...++.++..+ ..-+..-...+..+++.+...
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 455555556688999999999999963 2233432 12344444433 333455556777777777774
No 189
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.92 E-value=3.3 Score=48.59 Aligned_cols=142 Identities=9% Similarity=-0.011 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-----CCHHHHHHHHHHHHhhccCCcchHHHhhcCChH
Q 006877 354 GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-----TDPRTQEHAVTALLNLSINDSNKGTIVNAGAIP 428 (627)
Q Consensus 354 ~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~ 428 (627)
.+|...+.++++++.++..-......-.-..++|.|+.++.+ +...++..++++++..+.--....... ...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 579999999999999997544332222223567788888763 223355567788887753100001110 12344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhh------hCcHHHHHHHhc----cCCHHHHHHHHHHHHHhccCCC
Q 006877 429 DIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGA------AGAIPALIRLLC----DGTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 429 ~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~------~g~i~~Lv~lL~----~~~~~~~~~a~~aL~nL~~~~~ 498 (627)
.|++.+....+.++..|++++.+|+.. .+..+.. ...++.++..+. .-+......+..++..+....+
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 445555556788999999999999863 4444432 134555554443 3456666777888888877544
No 190
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=86.69 E-value=0.47 Score=45.71 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=104.1
Q ss_pred ChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHh
Q 006877 373 NADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSL 452 (627)
Q Consensus 373 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~L 452 (627)
++..|......=....|..++.++++.+|..++..| . .+.|..++++.++.++..++.. +
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~d~~VR~~aA~~---l 122 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDEDREVRITVADR---L 122 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCSCHHHHHHHHHH---S
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCCCHHHHHHHHHh---C
Confidence 445555555543445567777888888888877532 1 2456677788889999887774 2
Q ss_pred cCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHH
Q 006877 453 SVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILA 532 (627)
Q Consensus 453 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~ 532 (627)
. .+.|..++++++..++..++.. +. .+.+..++.++++.+...++..
T Consensus 123 ~--------------~~~L~~L~~D~d~~VR~~aA~~---l~--------------~~~l~~l~~D~d~~VR~~aa~~-- 169 (244)
T 1lrv_A 123 P--------------LEQLEQMAADRDYLVRAYVVQR---IP--------------PGRLFRFMRDEDRQVRKLVAKR-- 169 (244)
T ss_dssp C--------------TGGGGGGTTCSSHHHHHHHHHH---SC--------------GGGGGGTTTCSCHHHHHHHHHH--
T ss_pred C--------------HHHHHHHHcCCCHHHHHHHHHh---cC--------------HHHHHHHHcCCCHHHHHHHHHc--
Confidence 1 1235566777888888887762 21 1234456677888877777663
Q ss_pred HHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHH
Q 006877 533 ILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGS 612 (627)
Q Consensus 533 ~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~ 612 (627)
+ ..+.+..++...++.++..++..| ..+.|..++.+.+..++..+..
T Consensus 170 -l--------------~~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~ 216 (244)
T 1lrv_A 170 -L--------------PEESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVE 216 (244)
T ss_dssp -S--------------CGGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHH
T ss_pred -C--------------CHHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHH
Confidence 1 124455667788899999888753 2356788889999999998876
Q ss_pred HH
Q 006877 613 IL 614 (627)
Q Consensus 613 lL 614 (627)
.+
T Consensus 217 ~l 218 (244)
T 1lrv_A 217 HA 218 (244)
T ss_dssp HS
T ss_pred cC
Confidence 54
No 191
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.44 E-value=29 Score=40.72 Aligned_cols=200 Identities=16% Similarity=0.104 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHh----cC---CHHHHHHHhcCCCHHHHHHHHHHHHhhccC-
Q 006877 343 AIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAE----AG---AIPLLVELLSSTDPRTQEHAVTALLNLSIN- 414 (627)
Q Consensus 343 ~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~----~g---~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~- 414 (627)
..-.|++.|..-+.+...+....+. .....|.++.+ .| ++..+.+++.++.....+ |+.+|..+...
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~ 386 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQ 386 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccC
Confidence 3344555555555443333322222 23444555443 45 455566667665444333 33333322111
Q ss_pred CcchHHHhhcCChHHHHHHHcc----CCHHHHHHHHHHHHHhc----CCchhhHHhhhhCcHHHHH----HHhccCCHHH
Q 006877 415 DSNKGTIVNAGAIPDIVDVLKN----GSMEARENAAATLFSLS----VIDENKVAIGAAGAIPALI----RLLCDGTPRG 482 (627)
Q Consensus 415 ~~~k~~i~~~g~i~~Lv~lL~~----~~~e~~~~aa~~L~~Ls----~~~~~~~~i~~~g~i~~Lv----~lL~~~~~~~ 482 (627)
..+ ...+..+..++.+ .++.++..+.-++.+|. .....+ ....++.+. +.+..++..-
T Consensus 387 ~Pt------~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~ 456 (1056)
T 1lsh_A 387 QAT------RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEE 456 (1056)
T ss_dssp CCC------HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHH
T ss_pred CCC------HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHH
Confidence 111 2234556666654 35666776776666663 222111 112344444 4445667777
Q ss_pred HHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHH
Q 006877 483 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLME 555 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~ 555 (627)
+..++.+|.|+... ..++.|.+++.. ....++..|+.+|..++..... .+-+.++.
T Consensus 457 ~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~ 519 (1056)
T 1lsh_A 457 IVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLP 519 (1056)
T ss_dssp HHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHH
T ss_pred HHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHH
Confidence 88899999999863 357777777742 1234667788888888753211 13445667
Q ss_pred HHhc--CCHHHHHHHHHHHHH
Q 006877 556 VIRT--GSPRNRENAAAVLWA 574 (627)
Q Consensus 556 lL~~--~~~~~~~~A~~~L~~ 574 (627)
+..+ .++++|..|+.+|..
T Consensus 520 i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 520 IFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHHCTTSCHHHHHHHHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHH
Confidence 7743 457888888888754
No 192
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.55 E-value=17 Score=37.29 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=97.8
Q ss_pred hCcHHHHHHHhcc----C-------CHHHHHHHHHHHHHhccCCCchHHHHH-cCChHHHHHhhccCChhhHHHHHHHHH
Q 006877 465 AGAIPALIRLLCD----G-------TPRGKKDAATAIFNLSIYQGNKARAVR-AGIVPPLMRFLKDAGGGMVDEALAILA 532 (627)
Q Consensus 465 ~g~i~~Lv~lL~~----~-------~~~~~~~a~~aL~nL~~~~~~~~~l~~-~g~v~~Lv~lL~~~~~~~~~~Al~~L~ 532 (627)
.+|+..|+..|.. + +......++.+|..|.-+..+...++. .+++..|...|.+.++.++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 3556666665542 1 234566788888888877777777776 467899999998888888889999999
Q ss_pred HHhcChh--h-HHHHh----------hCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCH------HHHHHHHHcCcH
Q 006877 533 ILASHQE--G-KTAIG----------QAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGDA------EQLKIARELDAE 592 (627)
Q Consensus 533 ~L~~~~~--~-~~~i~----------~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~~------~~~~~~~~~g~i 592 (627)
.+|..++ | -..+. +..-+..++..+.+ .+...+..+...+-.|..+.+ .-+..+...|+.
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 9998654 5 33332 22346678888874 345566555565555666554 244666777887
Q ss_pred HHHHHhhhcCChHHHHHH
Q 006877 593 EALKELSESGTDRAKRKA 610 (627)
Q Consensus 593 ~~L~~l~~~~~~~~k~~A 610 (627)
+.|-.+-..+++.....-
T Consensus 206 ~il~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 206 QVLQELREIENEDMKVQL 223 (386)
T ss_dssp HHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHhccCChhHHHHH
Confidence 777776665666665443
No 193
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=85.42 E-value=21 Score=35.66 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHc-cCC
Q 006877 360 RAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGS 438 (627)
Q Consensus 360 ~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~-~~~ 438 (627)
..+...|..| -+....-.-++..++|..+......++.++.+..+..|+..|....... .--...+|-++..+. +++
T Consensus 261 tR~FDLL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccccccchHHHHHhccCCC
Confidence 3444444444 4677788889999999999999999999999999999988864321110 112345777777775 568
Q ss_pred HHHHHHHHHHHHHhcCCc-hhhHHhhhhCcHHHHHHHhcc
Q 006877 439 MEARENAAATLFSLSVID-ENKVAIGAAGAIPALIRLLCD 477 (627)
Q Consensus 439 ~e~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~ 477 (627)
.++.......|.|..... ..++.....|+|+.|-..+..
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 899999999999997776 456666677999998887753
No 194
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.65 E-value=2 Score=33.56 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=37.0
Q ss_pred CCccCCCCccccc-----Cceec--cCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 248 DDFRCPISLELMK-----DPVIV--STGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 248 ~~f~Cpic~~~m~-----dPv~~--~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
..-.|.||.+-.- +|.+. .|+...||.|.+-=.+.|+..||.|+.+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3457999987531 34443 588889999999888889999999987664
No 195
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=82.60 E-value=72 Score=37.01 Aligned_cols=285 Identities=12% Similarity=0.014 Sum_probs=154.1
Q ss_pred cHHHHhhhHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccHhHHHHHHHHhcCC---CHHHHHHHHHHHHHHhhh-Chh--
Q 006877 302 NYVLKSLIALWCENNGVELPKNQGACRSKKPGTCVSDCDRAAIDALLGKLANG---NVEEQRAAAGELRLLAKR-NAD-- 375 (627)
Q Consensus 302 n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~---~~~~~~~a~~~L~~L~~~-~~~-- 375 (627)
+...+..+.+|+.+-... .++.......|.+. +.+++.-|+..|....+. +++
T Consensus 21 d~~~r~~A~~~L~~~q~s---------------------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~ 79 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS---------------------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESN 79 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS---------------------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTS
T ss_pred CHHHHHHHHHHHHHHHcC---------------------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhh
Confidence 456677778887743211 12455566666543 678888888888776652 222
Q ss_pred --hHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHccCCH-HHHHHHHHHHHH
Q 006877 376 --NRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLKNGSM-EARENAAATLFS 451 (627)
Q Consensus 376 --~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~-e~~~~aa~~L~~ 451 (627)
.+..+. ...+..+.+.-. ....-++...+.++..++...-.. ...+.++.++..+.+++. ........+|..
T Consensus 80 ~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~ 155 (980)
T 3ibv_A 80 LLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKVLLS 155 (980)
T ss_dssp HHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 333332 223333333100 235668888888888876532000 135677888888876543 344445555553
Q ss_pred hcCC----c-----h--h-----hHHhhhh---CcHHHHHHHhcc----CCHHHHHHHHHHHHHhccCCCchHHHHHcCC
Q 006877 452 LSVI----D-----E--N-----KVAIGAA---GAIPALIRLLCD----GTPRGKKDAATAIFNLSIYQGNKARAVRAGI 508 (627)
Q Consensus 452 Ls~~----~-----~--~-----~~~i~~~---g~i~~Lv~lL~~----~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~ 508 (627)
++.. . . . +..+.+. ..++....+|.. .++.....++.+|......- ....++..+.
T Consensus 156 i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~l 234 (980)
T 3ibv_A 156 IGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPC 234 (980)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHH
T ss_pred hHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchH
Confidence 3211 0 0 1 2222221 113444444433 57778888888888776642 2345566778
Q ss_pred hHHHHHhhccCChhhHHHHHHHHHHHhcC---hhhHHHHhhCCChHHHHHHHh-----cCCHHHHHHHHHHHHHHhc---
Q 006877 509 VPPLMRFLKDAGGGMVDEALAILAILASH---QEGKTAIGQAEPIPVLMEVIR-----TGSPRNRENAAAVLWAICT--- 577 (627)
Q Consensus 509 v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~---~~~~~~i~~~g~v~~Lv~lL~-----~~~~~~~~~A~~~L~~L~~--- 577 (627)
++.+..+|.+ +.+...|+.+|..+... ++.+..++.. + .|...+. ..+.+..+.-+.++..++.
T Consensus 235 l~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~ 309 (980)
T 3ibv_A 235 MNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELV 309 (980)
T ss_dssp HHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 8888888864 78889999999888774 3444444432 1 2222232 2444444444444433322
Q ss_pred ---CC-----HHHHHHH--HHcCcHHHHHHhhhcCChHHHHHHHHHHHHH
Q 006877 578 ---GD-----AEQLKIA--RELDAEEALKELSESGTDRAKRKAGSILELL 617 (627)
Q Consensus 578 ---~~-----~~~~~~~--~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l 617 (627)
.. ++..... .-.+.++.++....+++..+...+...+..+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~ 359 (980)
T 3ibv_A 310 AIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDL 359 (980)
T ss_dssp HHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHH
T ss_pred HHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 11 1111111 1125788888888888877766665554443
No 196
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.72 E-value=17 Score=38.05 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=94.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhC
Q 006877 468 IPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA 547 (627)
Q Consensus 468 i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~ 547 (627)
...++... .|+.+.++.|+..|.....+-+.. ...++..++++..+.+..++..|+..|..+|.. +...
T Consensus 31 y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~----- 99 (507)
T 3u0r_A 31 YQVILDGV-KGGTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP----- 99 (507)
T ss_dssp HHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----
Confidence 33444433 457899999999888776543322 223577899999999999999999999999987 4322
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHH
Q 006877 548 EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILE 615 (627)
Q Consensus 548 g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~ 615 (627)
..+..|+.+|++.++......-..|..|-..++. |.+..|+..+.+|++.+++++...|+
T Consensus 100 kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 100 RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 3567789999988888888888888888887764 34555666666677888877766663
No 197
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.60 E-value=21 Score=41.85 Aligned_cols=186 Identities=11% Similarity=0.060 Sum_probs=96.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhcc----CCcchHHHhhcCChHHHHHHH----ccC------------------
Q 006877 384 GAIPLLVELLSSTDPRTQEHAVTALLNLSI----NDSNKGTIVNAGAIPDIVDVL----KNG------------------ 437 (627)
Q Consensus 384 g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~lL----~~~------------------ 437 (627)
.+++.++.+...++.++...++.....++. .+..+..+. ..++.|+..+ .-+
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~--~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~ 421 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE--EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGH--HHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhh
Confidence 456677776677777888777776666654 222222111 2233333332 110
Q ss_pred -CH---HHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHH----HHhcc--CCHHHHHHHHHHHHHhccCCCch-HHHHHc
Q 006877 438 -SM---EARENAAATLFSLSVIDENKVAIGAAGAIPALI----RLLCD--GTPRGKKDAATAIFNLSIYQGNK-ARAVRA 506 (627)
Q Consensus 438 -~~---e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv----~lL~~--~~~~~~~~a~~aL~nL~~~~~~~-~~l~~~ 506 (627)
+. ..+..+..+|..++... ...+++.+. ..+.+ .+-+.++.++.+++.++..-... ..-.-.
T Consensus 422 ~d~d~~~~~~~~~~~L~~l~~~~-------~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~ 494 (1049)
T 3m1i_C 422 KESDTIQLYKSEREVLVYLTHLN-------VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV 494 (1049)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH
Confidence 11 22344556666665222 112233333 33332 35577888999999887542221 111111
Q ss_pred CChHHHHHhhcc-----CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 006877 507 GIVPPLMRFLKD-----AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 507 g~v~~Lv~lL~~-----~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~ 579 (627)
.+++.|+.+... +.+.+...++.+++..+..-........ .+++.++..|.+++++++..|+.++.++|...
T Consensus 495 ~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 495 TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 234444443221 1222233466677665542111111221 35677777888788999999999999999853
No 198
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=80.52 E-value=48 Score=38.50 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=125.7
Q ss_pred HHHHHH-HHhcC-CCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCC---CHHHHHHHHHHHHhhcc--CC
Q 006877 343 AIDALL-GKLAN-GNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSST---DPRTQEHAVTALLNLSI--ND 415 (627)
Q Consensus 343 ~i~~Lv-~~L~s-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~---~~~~~~~A~~~L~nLs~--~~ 415 (627)
.+...+ ..+.. .+++.+.+|-..|..+-+ +++ +......+|.++ ++.+|.-|+.+|.+... .+
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~ 76 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNN 76 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCh
Confidence 344444 33333 268888888888887764 333 445566677653 68899888888887643 22
Q ss_pred c----chHHHhhcCChHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCchhhHHhhh-hCcHHHHHHHhccCCH-HHHH
Q 006877 416 S----NKGTIVNAGAIPDIVDVLKN-----GSMEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTP-RGKK 484 (627)
Q Consensus 416 ~----~k~~i~~~g~i~~Lv~lL~~-----~~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~-~~~~ 484 (627)
+ .+..+ -..++.++.. +..-++...+.++..+...... .. .+.++.|+.++.+++. ....
T Consensus 77 e~~~~~~~~l-----r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p----~~Wp~~i~~l~~~~~~~~~~~~~~ 147 (980)
T 3ibv_A 77 ESNLLELQMI-----RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP----SNWNDFFASLQGVIAASSQSEFSN 147 (980)
T ss_dssp TTSHHHHHHH-----HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHCCHHHHH
T ss_pred hhhHHHHHHH-----HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc----ccCchHHHHHHHHhcCCChhHHHH
Confidence 2 22222 2233444432 2355777777777766533211 01 1678888888876544 3445
Q ss_pred HHHHHHHHhcc----CC--C-----chH-----HHHHcC---ChHHHHHhhcc----CChhhHHHHHHHHHHHhcChhhH
Q 006877 485 DAATAIFNLSI----YQ--G-----NKA-----RAVRAG---IVPPLMRFLKD----AGGGMVDEALAILAILASHQEGK 541 (627)
Q Consensus 485 ~a~~aL~nL~~----~~--~-----~~~-----~l~~~g---~v~~Lv~lL~~----~~~~~~~~Al~~L~~L~~~~~~~ 541 (627)
..+++|..|.. .. . .|. .+.+.. +++....+|.. .++.++..++.+|......-+ -
T Consensus 148 ~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~ 226 (980)
T 3ibv_A 148 FYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-I 226 (980)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-H
T ss_pred HHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-H
Confidence 55666663332 11 0 111 122111 13444444433 577788888888888887533 3
Q ss_pred HHHhhCCChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 006877 542 TAIGQAEPIPVLMEVIRTGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 542 ~~i~~~g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~ 579 (627)
..+.+.+.++.+..++. ++..+..|+.+|..+....
T Consensus 227 ~~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 227 NLIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSC
T ss_pred HhhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcC
Confidence 34555567777777775 4889999999999988754
No 199
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=78.77 E-value=3.9 Score=31.06 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=29.6
Q ss_pred CCCccCCCCcccccCceeccC----cccccHHHHHHHHHh
Q 006877 247 PDDFRCPISLELMKDPVIVST----GQTYERSCIQKWLDA 282 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~c----g~t~~r~ci~~~~~~ 282 (627)
...+.|.+|.+-+.|...+.| +|.||-.|-..+++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 456789999999998776544 699999999988874
No 200
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=78.52 E-value=49 Score=33.05 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=94.5
Q ss_pred HHHhccCCCchH-HHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHh-cCCHHHHHH
Q 006877 490 IFNLSIYQGNKA-RAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIR-TGSPRNREN 567 (627)
Q Consensus 490 L~nL~~~~~~~~-~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~~~~~ 567 (627)
|.||..++.+.. -+++.++|..+...+.-++.++....+..|...+....-...-. ...+|.++..+. ++.+++--.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence 456666665544 68999999999999998999999999999988876543211111 246888888886 577888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCC------h-HHHHHHHHHHHH
Q 006877 568 AAAVLWAICTGDAEQLKIARELDAEEALKELSESGT------D-RAKRKAGSILEL 616 (627)
Q Consensus 568 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~------~-~~k~~A~~lL~~ 616 (627)
....|.|...+........+..|+|+.|...+...+ + .-++.|..++.+
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 999999999999888888899999999998875432 2 234446666554
No 201
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=77.96 E-value=35 Score=39.89 Aligned_cols=220 Identities=16% Similarity=0.131 Sum_probs=127.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhc-CCCHHHHHHHHHHHHhhccC-----
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLS-STDPRTQEHAVTALLNLSIN----- 414 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~~L~nLs~~----- 414 (627)
...+..++..+.+++.+.+.+|-..|..+-+ ++ ++...+..+|. +.+..+|.-|+.+|.|....
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 3456666666666777777778778877754 33 34455556664 45888999999999987532
Q ss_pred -CcchHHHhhcCChHHHHHHHccC-----CHHHHHHHHHHHHHhcCCchhhHHhhh-hCcHHHHHHHhccCCHHHHHHHH
Q 006877 415 -DSNKGTIVNAGAIPDIVDVLKNG-----SMEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKDAA 487 (627)
Q Consensus 415 -~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~ 487 (627)
++.|..| ....+..+...-..+ ...++...+.++..++..+.. .. .+.++.|+..+. .++.....++
T Consensus 85 ~~~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p----~~Wp~ll~~L~~~~~-~~~~~~~~~l 158 (1049)
T 3m1i_C 85 PNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP----QNWPEFIPELIGSSS-SSVNVCENNM 158 (1049)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHT-TCHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHHc-cChHHHHHHH
Confidence 1222222 222233332221111 245667777777776544321 11 267888998886 4555566677
Q ss_pred HHHHHhccC-----CC----ch-----HHHHHc--CChHHHHHhhcc-CChhhHHHHHHHHHHHhcChhhHHHHhhCCCh
Q 006877 488 TAIFNLSIY-----QG----NK-----ARAVRA--GIVPPLMRFLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEPI 550 (627)
Q Consensus 488 ~aL~nL~~~-----~~----~~-----~~l~~~--g~v~~Lv~lL~~-~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v 550 (627)
.+|..|+.. .+ .+ ..+... .+++.+...+.. .+..+...++.++......-+. ..+.+...+
T Consensus 159 ~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll 237 (1049)
T 3m1i_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNIL 237 (1049)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHH
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHH
Confidence 777766521 11 11 112221 223344444543 4566788889888887664332 224445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 006877 551 PVLMEVIRTGSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 551 ~~Lv~lL~~~~~~~~~~A~~~L~~L~~~ 578 (627)
+.+.+.+. .++..+..|+.+|..+...
T Consensus 238 ~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 238 ELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 66663222 3788899999999988865
No 202
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=76.89 E-value=24 Score=33.32 Aligned_cols=144 Identities=15% Similarity=0.025 Sum_probs=95.3
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHH-HhccCCHHHHHHHHHHHHHhcc-CCCchHHHH
Q 006877 427 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIR-LLCDGTPRGKKDAATAIFNLSI-YQGNKARAV 504 (627)
Q Consensus 427 i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~aL~nL~~-~~~~~~~l~ 504 (627)
++....+..++..++|..|+.+|..+ .. ....++.+.. +....+=.+++.++.++..++. ....
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 34445555667789999999988777 21 1235566665 4445678899999999999885 2222
Q ss_pred HcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhC-CChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHH
Q 006877 505 RAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQA-EPIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQL 583 (627)
Q Consensus 505 ~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~ 583 (627)
..++.+.....+++..++..|...+.--+..+.-+ .+. -+++.|-.+..+++.-+|......|..++..+|+-+
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 16678888898999998888877664333221100 000 123444444445677899999999999999999877
Q ss_pred HHHHHc
Q 006877 584 KIAREL 589 (627)
Q Consensus 584 ~~~~~~ 589 (627)
..+++.
T Consensus 214 ~~~~~~ 219 (240)
T 3l9t_A 214 KIELKN 219 (240)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 766654
No 203
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=76.65 E-value=70 Score=37.48 Aligned_cols=165 Identities=13% Similarity=0.107 Sum_probs=98.2
Q ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHhhcc----CCcchHHHhhcCChHHHH----HHHccCCHHHHHHHHHHHHHh
Q 006877 385 AIPLLVELLSS----TDPRTQEHAVTALLNLSI----NDSNKGTIVNAGAIPDIV----DVLKNGSMEARENAAATLFSL 452 (627)
Q Consensus 385 ~i~~Lv~lL~~----~~~~~~~~A~~~L~nLs~----~~~~k~~i~~~g~i~~Lv----~lL~~~~~e~~~~aa~~L~~L 452 (627)
.+..+..++.+ .++.++..++-+++.|.. +.... ....++.+. +.+..++.+-+..++.+|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34455566655 356677777777777642 21111 112244444 445667777788889999998
Q ss_pred cCCchhhHHhhhhCcHHHHHHHhcc-------CCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc--CChhh
Q 006877 453 SVIDENKVAIGAAGAIPALIRLLCD-------GTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD--AGGGM 523 (627)
Q Consensus 453 s~~~~~~~~i~~~g~i~~Lv~lL~~-------~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~--~~~~~ 523 (627)
-.. ..++.|..++.. ...+++..|++||.++....... +-+.|++++.+ .+.++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~Ev 530 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSEL 530 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHH
Confidence 653 357777777642 23577888999999998542211 23456777754 45565
Q ss_pred HHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhc-CCHHHHHHHHHHHHHHhcCC
Q 006877 524 VDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRT-GSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 524 ~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~A~~~L~~L~~~~ 579 (627)
+..|+.+| +-.+|.. ..+..+...+.. .+..+.-.....|.+++...
T Consensus 531 RiaA~~~L--m~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 531 RIRSCIVF--FESKPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHH--HHTCCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH--HHHCcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 55555444 3333432 135556666654 45667777777777777655
No 204
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=75.55 E-value=32 Score=33.71 Aligned_cols=145 Identities=11% Similarity=0.076 Sum_probs=97.8
Q ss_pred hHHHHHHHccC------CHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHh--ccCCHHHHHHHHHHHHHhccCCC
Q 006877 427 IPDIVDVLKNG------SMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLL--CDGTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 427 i~~Lv~lL~~~------~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~aL~nL~~~~~ 498 (627)
+..+..++++| +.+..+.|+..|..+|.+-.+-.+|.+.. ...|-+++ ...++.+++.|.++|..-..+.+
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 55666777777 34567888999999998888878888742 34444444 33456788999999987776544
Q ss_pred -chHHHHH--cCChHHHHHhhcc-------CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC--CHHHHH
Q 006877 499 -NKARAVR--AGIVPPLMRFLKD-------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG--SPRNRE 566 (627)
Q Consensus 499 -~~~~l~~--~g~v~~Lv~lL~~-------~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~ 566 (627)
....+.+ ...+..+..-|.. ....++..-+.+|..|..++.. + ...++..|.+++..+ .+.+|.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHH
Confidence 3334443 3455555544432 2345677788899888887621 2 234678888888777 788999
Q ss_pred HHHHHHHHHh
Q 006877 567 NAAAVLWAIC 576 (627)
Q Consensus 567 ~A~~~L~~L~ 576 (627)
.+..++..+-
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9988887755
No 205
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=75.28 E-value=33 Score=33.66 Aligned_cols=148 Identities=7% Similarity=0.048 Sum_probs=96.7
Q ss_pred CcHHHHHHHhccC------CHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhh--ccCChhhHHHHHHHHHHHhc-
Q 006877 466 GAIPALIRLLCDG------TPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFL--KDAGGGMVDEALAILAILAS- 536 (627)
Q Consensus 466 g~i~~Lv~lL~~~------~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL--~~~~~~~~~~Al~~L~~L~~- 536 (627)
..+.....++++| +......|+..|..++.+-+--.+|+++. ...|-.++ ....+.+.+.|..+++..-+
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 3456666777776 34456677778888877655556677633 33333333 33556688999999987777
Q ss_pred ChhhHHHHhhC--CChHHHHHHHhc-------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcC--ChH
Q 006877 537 HQEGKTAIGQA--EPIPVLMEVIRT-------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESG--TDR 605 (627)
Q Consensus 537 ~~~~~~~i~~~--g~v~~Lv~lL~~-------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~--~~~ 605 (627)
+|.....|.+. ..+..++.-|.. ........-+.+|-.|..+.... ....+..|.+++.-+ .+.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHH
Confidence 56666666652 455555554433 23445556678888888876222 144678888888877 999
Q ss_pred HHHHHHHHHHHHHh
Q 006877 606 AKRKAGSILELLQR 619 (627)
Q Consensus 606 ~k~~A~~lL~~l~~ 619 (627)
+|.++..++..+-.
T Consensus 176 ~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 176 LQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc
Confidence 99999998887654
No 206
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.67 E-value=10 Score=33.71 Aligned_cols=72 Identities=8% Similarity=0.084 Sum_probs=58.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLS 412 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs 412 (627)
..++..+.+.|++.++.+|..|+..|-.+.+++ ......+....++..|++++.. .++.++..++..+..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999875 3445566667788888888876 57899999888776654
No 207
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.93 E-value=12 Score=32.73 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=60.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCHHHHHHHhcC------CCHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~nLs~ 413 (627)
..++..+.+.|++.++.+|..|+..|-.+.+++. .....+....++..|++++.. .+..++..++..+..-+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999998744 445667777899999999874 378899998888877653
No 208
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=71.54 E-value=47 Score=38.90 Aligned_cols=220 Identities=15% Similarity=0.090 Sum_probs=131.3
Q ss_pred cHhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhccCC---
Q 006877 340 DRAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSIND--- 415 (627)
Q Consensus 340 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~~~--- 415 (627)
+-..+..++..+.+++.+.+.+|-..|..+-+ +++. .+.+..+|.. .++.+|--|+.+|.+.....
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 45678888888888888878888777776653 4433 3444445544 58899999999998875421
Q ss_pred ---cchHHHhhcCChHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHH
Q 006877 416 ---SNKGTIVNAGAIPDIVDVLKN-----GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAA 487 (627)
Q Consensus 416 ---~~k~~i~~~g~i~~Lv~lL~~-----~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 487 (627)
+.+..+ ....+..+...-.+ .++.++...+.++..+...+.... =.+.++.++.++.. ++......+
T Consensus 96 L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~---Wp~fi~dLv~~~~~-~~~~~~~~L 170 (1073)
T 3gjx_A 96 LPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH---WPTFISDIVGASRT-SESLCQNNM 170 (1073)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT---CTTHHHHHHHHHHH-CHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh---ccHHHHHHHHHhCC-CHHHHHHHH
Confidence 122222 23334444443222 235556666666666653321100 02577888887754 345566677
Q ss_pred HHHHHhccC--C-------CchH-H---HHHcCChHHHHH----hhcc-CChhhHHHHHHHHHHHhcChhhHHHHhhCCC
Q 006877 488 TAIFNLSIY--Q-------GNKA-R---AVRAGIVPPLMR----FLKD-AGGGMVDEALAILAILASHQEGKTAIGQAEP 549 (627)
Q Consensus 488 ~aL~nL~~~--~-------~~~~-~---l~~~g~v~~Lv~----lL~~-~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~ 549 (627)
.+|..|... + ..|. . .+... ++.++. .|.. .++.+...++.+|..+.+.-+. ..+++.+.
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~l 248 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE-FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchH
Confidence 777776542 1 1111 1 11221 444444 4433 5677788899999999886543 35666677
Q ss_pred hHHHH-HHHhcCCHHHHHHHHHHHHHHhcC
Q 006877 550 IPVLM-EVIRTGSPRNRENAAAVLWAICTG 578 (627)
Q Consensus 550 v~~Lv-~lL~~~~~~~~~~A~~~L~~L~~~ 578 (627)
++.|+ .+| +++..+..|+.+|..+...
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 77663 454 5788999999999998875
No 209
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.73 E-value=9.7 Score=32.91 Aligned_cols=72 Identities=7% Similarity=0.125 Sum_probs=58.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhh-HHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN-RVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLS 412 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~-r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs 412 (627)
...+..+.+.|++.++.+|..|+..|-.+.+++... ...+....++..|++++...++.++...+..+..-+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999998865433 445556677888888887788999999888887765
No 210
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=69.19 E-value=1.1 Score=28.52 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=13.1
Q ss_pred CCccCCCCcccccCce
Q 006877 248 DDFRCPISLELMKDPV 263 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv 263 (627)
+.|.||+|+..+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4699999999888763
No 211
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=68.11 E-value=12 Score=33.45 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=60.0
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-hhHHHHHhcCCHHHHHHHhcC------CCHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNA-DNRVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~nLs~ 413 (627)
...+..|.+.|++.++.+|..|+..|-.+.+++. .....+....++..|++++.. .+..++..++..+..-+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999998754 345567777889999999863 368899998888877653
No 212
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=67.79 E-value=39 Score=31.83 Aligned_cols=137 Identities=17% Similarity=0.085 Sum_probs=88.7
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHH-HhcCCCHHHHHHHHHHHHhhcc--CCcch
Q 006877 343 AIDALLGKLA-NGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVE-LLSSTDPRTQEHAVTALLNLSI--NDSNK 418 (627)
Q Consensus 343 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~~L~nLs~--~~~~k 418 (627)
.+..+...|. +...+++..|+..|..+ ... ...++.+.. +-..++-.+++.+..++..++. +++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 4445555554 44467888888877666 211 124455555 4456789999999999988864 222
Q ss_pred HHHhhcCChHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 006877 419 GTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 419 ~~i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~ 498 (627)
..++.+.....+++..+|..|...+.--+... ..+.-..-+++.|-.+..+++.-+++...++|..++...+
T Consensus 139 ------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 25678888899999999998887653211111 0111111345555566666778889999999999998654
Q ss_pred c
Q 006877 499 N 499 (627)
Q Consensus 499 ~ 499 (627)
.
T Consensus 211 d 211 (240)
T 3l9t_A 211 D 211 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 213
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.15 E-value=14 Score=32.80 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=55.6
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhc-CChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSES-GTDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~-~~~~~k~~A~~lL~~l~~ 619 (627)
++..|.+-|.++++.++..|+.+|-.+..|.+. ....+.....+..|+.++.. .++.+++++..++..-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 456777788889999999999999999988544 44566666788888888875 468899999888876553
No 214
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=64.94 E-value=11 Score=32.62 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=56.1
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHH-HHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ-LKIARELDAEEALKELSESGTDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~~ 619 (627)
++..|.+-|.++++.++..|+.+|-.+..|.+.. ...+.....+..|..++...++.++++...++.....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4667777888899999999999998888886543 3455555677788888887889999999998886653
No 215
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=62.69 E-value=17 Score=31.66 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=56.5
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhc------CChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~------~~~~~k~~A~~lL~~l~~ 619 (627)
++..|..-|.++++.++..|+.+|-.+..|.+. ....+.....+..|+.++.. .++.+++++..++..-..
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 466778888899999999999999999998654 55667677888899998864 367899988888776543
No 216
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=62.31 E-value=1.3e+02 Score=35.68 Aligned_cols=213 Identities=10% Similarity=0.018 Sum_probs=117.3
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHh--cCCCHHHHHHHHHHHHhhccC-----
Q 006877 344 IDALLGKLANG--NVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELL--SSTDPRTQEHAVTALLNLSIN----- 414 (627)
Q Consensus 344 i~~Lv~~L~s~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~~L~nLs~~----- 414 (627)
+..++..+.+. +.+.+.+|-..|..+-... .+...+...| .+.+..+|.-|+.+|.|....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 33444443343 5667888888887775432 2334444444 345788999999999887532
Q ss_pred -CcchHHHhhcCChHHHHHHHcc-------CCHHHHHHHHHHHHHhcCCchhhHHhhh-hCcHHHHHHHhccCCHHHHHH
Q 006877 415 -DSNKGTIVNAGAIPDIVDVLKN-------GSMEARENAAATLFSLSVIDENKVAIGA-AGAIPALIRLLCDGTPRGKKD 485 (627)
Q Consensus 415 -~~~k~~i~~~g~i~~Lv~lL~~-------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~ 485 (627)
++.|..|. ..++..+.+ ....++...+.++..++..+.. .. .+.++.|+.++.+ ++.....
T Consensus 83 ~~e~k~~Ir-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~ 152 (1204)
T 3a6p_A 83 SRLEKVYLK-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTEL 152 (1204)
T ss_dssp CHHHHHHHH-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHH
T ss_pred CHHHHHHHH-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHH
Confidence 12222222 234444332 3467777778888777654321 11 2678888888876 4555777
Q ss_pred HHHHHHHhccC---CC----chHH-----HHHc--CChHHHHHhhcc-------------------CChhhHHHHHHHHH
Q 006877 486 AATAIFNLSIY---QG----NKAR-----AVRA--GIVPPLMRFLKD-------------------AGGGMVDEALAILA 532 (627)
Q Consensus 486 a~~aL~nL~~~---~~----~~~~-----l~~~--g~v~~Lv~lL~~-------------------~~~~~~~~Al~~L~ 532 (627)
++.+|..|+.. .+ .+.. +.+. .+++.+...+.. .+..+...++.++.
T Consensus 153 ~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~ 232 (1204)
T 3a6p_A 153 VMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLA 232 (1204)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHH
Confidence 78888777532 11 1111 1111 223333333322 11234455566655
Q ss_pred HHhcChhhHHHHhhCC--ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 006877 533 ILASHQEGKTAIGQAE--PIPVLMEVIRTGSPRNRENAAAVLWAICTGD 579 (627)
Q Consensus 533 ~L~~~~~~~~~i~~~g--~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~ 579 (627)
+....... ..+.+.. .++.+..++. ++.++..|+.+|..++...
T Consensus 233 ~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 233 GYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred HHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 54443221 2233332 4555555443 5778999999999999855
No 217
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.02 E-value=22 Score=31.01 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=59.8
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhh-HHHHHhcCCHHHHHHHhcC------CCHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNADN-RVCIAEAGAIPLLVELLSS------TDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~-r~~i~~~g~i~~Lv~lL~~------~~~~~~~~A~~~L~nLs~ 413 (627)
...+..+.+.|.+.++.+|..|+..|-.+.+++... ...+....++..|++++.. .+..++...+..+..-+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999998866544 4556667888999999963 478899998888877653
No 218
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=60.64 E-value=2.2e+02 Score=33.31 Aligned_cols=212 Identities=10% Similarity=0.054 Sum_probs=124.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHHhhcCChHHHHHHHc-cCCHHHHHHHHHHHHHhcCCch-----hh
Q 006877 386 IPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTIVNAGAIPDIVDVLK-NGSMEARENAAATLFSLSVIDE-----NK 459 (627)
Q Consensus 386 i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~aa~~L~~Ls~~~~-----~~ 459 (627)
+..++..+.+++...|..|-..|..+-.+++. ...+..+|. +.+++++-.|+.+|.+...... ..
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 45566666677788888888888777555433 333333343 3478999999999987754322 11
Q ss_pred HHhhhhCcHHHHHHHhcc-----CCHHHHHHHHHHHHHhccC--CCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHH
Q 006877 460 VAIGAAGAIPALIRLLCD-----GTPRGKKDAATAIFNLSIY--QGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILA 532 (627)
Q Consensus 460 ~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~nL~~~--~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~ 532 (627)
..-.+...+..+...-.+ .++..+...+.++..+... ++. -.+.++-++..+.. ++...+..+.+|.
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~-~~~~~~~~L~IL~ 174 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT-SESLCQNNMVILK 174 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 112222333333333222 1344555566666666643 221 24567777777753 3455677888888
Q ss_pred HHhcCh-----h----h-----HHHHhhCCChHHHHHH----Hh-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHH
Q 006877 533 ILASHQ-----E----G-----KTAIGQAEPIPVLMEV----IR-TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEE 593 (627)
Q Consensus 533 ~L~~~~-----~----~-----~~~i~~~g~v~~Lv~l----L~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~ 593 (627)
.|+..- . . +..+... ++.++.+ |. .+++.....+..+|......-+ ...+.+.+.++
T Consensus 175 ~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~ 250 (1073)
T 3gjx_A 175 LLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLIS 250 (1073)
T ss_dssp HHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHH
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHH
Confidence 877630 0 1 2223322 4444444 43 3567777888889988887653 34566778888
Q ss_pred HHH-HhhhcCChHHHHHHHHHHHHHH
Q 006877 594 ALK-ELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 594 ~L~-~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
.|+ .++ +++..+..|..+|..+-
T Consensus 251 ~L~~~~L--~~~~~r~aA~dcL~eIv 274 (1073)
T 3gjx_A 251 TLIYKFL--NVPMFRNVSLKCLTEIA 274 (1073)
T ss_dssp HHHHHTS--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CChHHHHHHHHHHHHHH
Confidence 773 554 46778888888777654
No 219
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=59.67 E-value=13 Score=35.72 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=67.3
Q ss_pred cCCCHHHHHHHHHHHHhhccCCc-chHHHhhcCChHHHHHHHcc--------CCHHHHHHHHHHHHHhcCCchh-hHHhh
Q 006877 394 SSTDPRTQEHAVTALLNLSINDS-NKGTIVNAGAIPDIVDVLKN--------GSMEARENAAATLFSLSVIDEN-KVAIG 463 (627)
Q Consensus 394 ~~~~~~~~~~A~~~L~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~--------~~~e~~~~aa~~L~~Ls~~~~~-~~~i~ 463 (627)
.+.++..+-.+++++.|+-.++. ++..+........+++.+.+ .+..++..++.+++|+|..-.. +.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 35578899999999999988887 66666554334555554422 2346777888899999764211 11
Q ss_pred hhCcHHHHHHHhcc---------CCHHHHHHHHHHHHHhccCCC
Q 006877 464 AAGAIPALIRLLCD---------GTPRGKKDAATAIFNLSIYQG 498 (627)
Q Consensus 464 ~~g~i~~Lv~lL~~---------~~~~~~~~a~~aL~nL~~~~~ 498 (627)
.......+++.+.. .+.+....++.||++|...++
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 12344555555542 367888889999999986443
No 220
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=59.28 E-value=5.5 Score=31.43 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=37.3
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCCC
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTA 298 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~ 298 (627)
-.-+.|--|....+. -+..+.|-+|..|+...+. ....||.|+.+++..-
T Consensus 26 ~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCCS
T ss_pred cCcccChhhccccCC-eeeecchhhHHHHHHHHHh-hccCCcccCCcCCcce
Confidence 345778888776653 2345568899999988776 5567999999998653
No 221
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=58.98 E-value=17 Score=32.54 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=56.7
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhc------CChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~------~~~~~k~~A~~lL~~l~~ 619 (627)
++..|.+-|.++++.++..|+.+|-.+..|.+. ....+.....+..|+.++.. .++.+++++..++..-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 466788888899999999999999999999765 44566667788889998863 257899999888876653
No 222
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=58.97 E-value=2.7 Score=25.34 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=12.3
Q ss_pred CCccCCCCcccccCc
Q 006877 248 DDFRCPISLELMKDP 262 (627)
Q Consensus 248 ~~f~Cpic~~~m~dP 262 (627)
..|.||+|+..|-|+
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 468899999888776
No 223
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=58.22 E-value=2.9e+02 Score=32.70 Aligned_cols=250 Identities=9% Similarity=0.040 Sum_probs=133.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhh-----ChhhHHHHHhcCCHHHHHHHhcC---CCHHHHHHHHHHHHhhccCCcchHHHhh
Q 006877 352 ANGNVEEQRAAAGELRLLAKR-----NADNRVCIAEAGAIPLLVELLSS---TDPRTQEHAVTALLNLSINDSNKGTIVN 423 (627)
Q Consensus 352 ~s~~~~~~~~a~~~L~~L~~~-----~~~~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~A~~~L~nLs~~~~~k~~i~~ 423 (627)
.+.+..++.-|+..|++..+. +.+.|..+.+ ..+..+...-.. ....++...+.++..++..+-.. .-
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HW 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cc
Confidence 345688888898888887643 3344544442 233333322111 35778888888888887642110 13
Q ss_pred cCChHHHHHHHccCCHHHHHHHHHHHHHhcCC-------chhhH-----Hhhhh--CcHHHHHHHhcc------------
Q 006877 424 AGAIPDIVDVLKNGSMEARENAAATLFSLSVI-------DENKV-----AIGAA--GAIPALIRLLCD------------ 477 (627)
Q Consensus 424 ~g~i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~-------~~~~~-----~i~~~--g~i~~Lv~lL~~------------ 477 (627)
.+.++.|+..+.+ ++...+.+..+|..|+.. ...+. .+... ..++.+..++..
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5678888888876 455677788888877532 01111 11111 233334444432
Q ss_pred -------CCHHHHHHHHHHHHHhccCCCchHHHHHcC--ChHHHHHhhccCChhhHHHHHHHHHHHhcCh---hhHHHHh
Q 006877 478 -------GTPRGKKDAATAIFNLSIYQGNKARAVRAG--IVPPLMRFLKDAGGGMVDEALAILAILASHQ---EGKTAIG 545 (627)
Q Consensus 478 -------~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g--~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~---~~~~~i~ 545 (627)
++......++.++.+....-.. ..+.+.. .++.+..++. ++.+...|+.+|..+.... +.+..++
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li 288 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLM 288 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGG
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHH
Confidence 1123455566666654443221 2233332 6666766654 5678899999999998743 3333333
Q ss_pred hC---CChHHHHHHHh--c------CCHHHHHHHHHHHHHHhcCCHHHHHHHHH----------cCcHHHHHHhhhcCCh
Q 006877 546 QA---EPIPVLMEVIR--T------GSPRNRENAAAVLWAICTGDAEQLKIARE----------LDAEEALKELSESGTD 604 (627)
Q Consensus 546 ~~---g~v~~Lv~lL~--~------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~----------~g~i~~L~~l~~~~~~ 604 (627)
.. ..+..++..+. . .+....+.-+.++..++. .....+.+ .+.++.++.+..+.+.
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~ 365 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSNFGKYLESFLAFTTHPSQ 365 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhHHHHHHHHHHHHHhCccH
Confidence 21 11334444442 1 113344555666666653 12221111 1356677777777665
Q ss_pred HHHHHHHH
Q 006877 605 RAKRKAGS 612 (627)
Q Consensus 605 ~~k~~A~~ 612 (627)
.+...+..
T Consensus 366 ~vs~~~l~ 373 (1204)
T 3a6p_A 366 FLRSSTQM 373 (1204)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 55555544
No 224
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=56.30 E-value=4.7 Score=30.67 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=32.8
Q ss_pred ccCCCCcccccCcee----ccCcc----cccHHHHHHHHHhCCCCCCCccccccCCCCCccH
Q 006877 250 FRCPISLELMKDPVI----VSTGQ----TYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNY 303 (627)
Q Consensus 250 f~Cpic~~~m~dPv~----~~cg~----t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l~~n~ 303 (627)
-.||||+..+...-. ++-+. --+|.-...-+..-.+.||.|+..+.-..+..+.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRRE 70 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHH
Confidence 369999886642111 11111 1245555556666678899999988777665543
No 225
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=56.18 E-value=4.6 Score=32.12 Aligned_cols=13 Identities=23% Similarity=0.917 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHh
Q 006877 270 TYERSCIQKWLDA 282 (627)
Q Consensus 270 t~~r~ci~~~~~~ 282 (627)
-|||+|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 226
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=55.83 E-value=4.7 Score=32.00 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=11.5
Q ss_pred cccHHHHHHHHHh
Q 006877 270 TYERSCIQKWLDA 282 (627)
Q Consensus 270 t~~r~ci~~~~~~ 282 (627)
-|||+|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 227
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=54.50 E-value=23 Score=30.89 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=56.4
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHH-HHHHHHcCcHHHHHHhhhc------CChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQ-LKIARELDAEEALKELSES------GTDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~l~~~------~~~~~k~~A~~lL~~l~~ 619 (627)
++..|..-|.++++.++..|+.+|-.+..|.+.. ...+.....+..|+.++.. .++.++.+...++..-..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4667788888999999999999999999887654 3556666788889988863 468899998888877653
No 228
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=54.34 E-value=8 Score=32.40 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=38.3
Q ss_pred CCccCCCCcccccC---ceeccCcccccHHHHHHHHHhCCCCCCCccccccCCCC
Q 006877 248 DDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTAL 299 (627)
Q Consensus 248 ~~f~Cpic~~~m~d---Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~~l 299 (627)
+=|.|..|...+.+ +....-|..||..|..+.|. ....|..|++++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCCCcCchhe
Confidence 44999999999963 45567889999999888774 22269999988875443
No 229
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.91 E-value=28 Score=32.66 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=58.1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChh-hHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhcc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLSI 413 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs~ 413 (627)
..++..|.+.|++.++.+|..|+..|-.+.++... ....+....++..|++++.. .+..+++.++..+...+.
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999875433 34556666777888888854 478899998888877653
No 230
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.94 E-value=27 Score=32.54 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=57.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChh-hHHHHHhcCCHHHHHHHhcC-CCHHHHHHHHHHHHhhc
Q 006877 341 RAAIDALLGKLANGNVEEQRAAAGELRLLAKRNAD-NRVCIAEAGAIPLLVELLSS-TDPRTQEHAVTALLNLS 412 (627)
Q Consensus 341 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~nLs 412 (627)
..++..|.+.|++.++.+|..|+..|-.+.+.... ....+....++..|++++.+ .+..++..++..+..-+
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999987543 44566666788888888864 46788888887776654
No 231
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=49.13 E-value=48 Score=29.02 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=56.5
Q ss_pred HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCHHH-HHHHhcC---CCHHHHHHHHHHHHhhc
Q 006877 341 RAAIDALLGKLA-NGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPL-LVELLSS---TDPRTQEHAVTALLNLS 412 (627)
Q Consensus 341 ~~~i~~Lv~~L~-s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~~---~~~~~~~~A~~~L~nLs 412 (627)
..++..+.+.|+ +.++.+|..|+..|-.+.+++ ......+....++.. |++++.. ++..++..++..+..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 568899999998 578999999999999999875 444556777778887 8888843 34588888888777654
No 232
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=48.26 E-value=24 Score=30.37 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=50.7
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHc-CcHHHHHHhhh-----cC---ChHHHHHHHHHHHHHH
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIAREL-DAEEALKELSE-----SG---TDRAKRKAGSILELLQ 618 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~-g~i~~L~~l~~-----~~---~~~~k~~A~~lL~~l~ 618 (627)
+...|.+-|...++.++-.|+.+|-.||.++.+ .+..+.+. ..|..|.++-- +| ...++.+|.+++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 456777788888899999999999999977655 44444443 23333333211 22 2678999999999997
Q ss_pred hHHh
Q 006877 619 RIDM 622 (627)
Q Consensus 619 ~~~~ 622 (627)
+...
T Consensus 130 d~~~ 133 (140)
T 1vdy_A 130 SEEN 133 (140)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 6544
No 233
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=46.57 E-value=56 Score=33.67 Aligned_cols=129 Identities=15% Similarity=0.140 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCHHHHH-HHhcCCCHHHHHHHHHHHHhhccCCcchHHHh-hcCChHHHHHHHcc
Q 006877 359 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLV-ELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKN 436 (627)
Q Consensus 359 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~ 436 (627)
+.-++..||.+..+.... +.+..++ ..+.+..+..+-.+++++.|+-.++.....++ .......+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 444666666666543322 1222222 23335578889999999999988877444444 33234556655531
Q ss_pred --------CCHHHHHHHHHHHHHhcCCchh-hHHhhhhCcHHHHHHHhc---------cCCHHHHHHHHHHHHHhccCC
Q 006877 437 --------GSMEARENAAATLFSLSVIDEN-KVAIGAAGAIPALIRLLC---------DGTPRGKKDAATAIFNLSIYQ 497 (627)
Q Consensus 437 --------~~~e~~~~aa~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~---------~~~~~~~~~a~~aL~nL~~~~ 497 (627)
.+..++..++.+++|+|..-.. +. .......++..+. ..+.+....++.||.+|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1345778888888999764321 11 1234455666665 247889999999999998643
No 234
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.41 E-value=22 Score=34.10 Aligned_cols=131 Identities=8% Similarity=0.029 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHHHhccCCC-chHHHHHcCChHHHHHhhcc--------CChhhHHHHHHHHHHHhcChhh-HHHHhh
Q 006877 477 DGTPRGKKDAATAIFNLSIYQG-NKARAVRAGIVPPLMRFLKD--------AGGGMVDEALAILAILASHQEG-KTAIGQ 546 (627)
Q Consensus 477 ~~~~~~~~~a~~aL~nL~~~~~-~~~~l~~~g~v~~Lv~lL~~--------~~~~~~~~Al~~L~~L~~~~~~-~~~i~~ 546 (627)
++++..+..++++++|+-.++. ++..+........+++.+.+ .+..++-.+..++.|++..-.. +. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 4467788999999999999988 66655544334445554422 2344566677788888873111 10 1
Q ss_pred CCChHHHHHHHhc---------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhc-CChHHHHHHHH
Q 006877 547 AEPIPVLMEVIRT---------GSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSES-GTDRAKRKAGS 612 (627)
Q Consensus 547 ~g~v~~Lv~lL~~---------~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~-~~~~~k~~A~~ 612 (627)
......+++.+.. .+++....+..+|++|...++...+.....+.+..... .. ..+|.+.-+..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~~~~~~~~~~~--~~~~e~R~~~v~~e 251 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKR--SYGNVPRFKDIFDD 251 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTTTCHHHHHHHH--HHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhccHHHHHHHHH--HcccchHHHHHHHh
Confidence 2344556666652 25567777788888888655433322222222222221 12 35677666554
No 235
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=44.91 E-value=12 Score=31.29 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=36.3
Q ss_pred CCccCCCCcccccC-ceeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 248 DDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~d-Pv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
+-|.|..|...+.+ +....-|..||..|..+.+ ...|+.|++++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 56999999998875 5556788999999976543 4679999998874
No 236
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.82 E-value=41 Score=31.31 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=55.3
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~l~~ 619 (627)
++..|.+-|.++++.++..|+.+|-.+..+.+. ....+.....+..|..++.+. ++.+++++..++..-..
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999999765 345566666888888887765 57888888888776653
No 237
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=43.75 E-value=40 Score=33.99 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhChhhHHHHHhcCCHHHHH-HHhcCCCHHHHHHHHHHHHhhccCCcchHHHh-hcCChHHHHHHHcc
Q 006877 359 QRAAAGELRLLAKRNADNRVCIAEAGAIPLLV-ELLSSTDPRTQEHAVTALLNLSINDSNKGTIV-NAGAIPDIVDVLKN 436 (627)
Q Consensus 359 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~ 436 (627)
+.-++..+|.+..+.... +.+..++ ..+.+..+..+-.+++++.|+-.++.....++ .......+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 444666677666544321 2233333 23335578889999999999988877444444 32223444544421
Q ss_pred --------CCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhc---------cCCHHHHHHHHHHHHHhccC
Q 006877 437 --------GSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLC---------DGTPRGKKDAATAIFNLSIY 496 (627)
Q Consensus 437 --------~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---------~~~~~~~~~a~~aL~nL~~~ 496 (627)
.+..++..++.+++|+|....... ........+++.+. ..+.+....++.||++|...
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~--~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC--SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 134577888888899976432100 01234456666665 24788999999999999863
No 238
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.70 E-value=27 Score=32.76 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=55.1
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHhhhcC-ChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEALKELSESG-TDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~l~~~~-~~~~k~~A~~lL~~l~~ 619 (627)
++..|.+-|.++++.++..|+.+|-.+..|.+. ....+.....+..|..++... ++.+++++..++.....
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 466778888889999999999999998887654 445555666777788777654 67899999888887653
No 239
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=43.49 E-value=7.7 Score=26.42 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=11.4
Q ss_pred CCCCCccCCCCcc
Q 006877 245 VIPDDFRCPISLE 257 (627)
Q Consensus 245 ~~~~~f~Cpic~~ 257 (627)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 6899999999975
No 240
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.63 E-value=1.1 Score=35.52 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=25.3
Q ss_pred ccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 250 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 250 f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
..||.|+..|.. .-|+.+|..|-..+. ....||.|++++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~--~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIE--MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEE--EEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhh--ccccCcchhhHHH
Confidence 689999988752 123334666633211 2347999998875
No 241
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=39.33 E-value=12 Score=26.22 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=12.0
Q ss_pred CCCCCCccCCCCcc
Q 006877 244 PVIPDDFRCPISLE 257 (627)
Q Consensus 244 ~~~~~~f~Cpic~~ 257 (627)
..+|+++.||+|..
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 36899999999975
No 242
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=38.17 E-value=10 Score=26.78 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=11.6
Q ss_pred CCCCCccCCCCcc
Q 006877 245 VIPDDFRCPISLE 257 (627)
Q Consensus 245 ~~~~~f~Cpic~~ 257 (627)
.+|+++.||+|..
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 6899999999975
No 243
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.14 E-value=39 Score=24.72 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=26.6
Q ss_pred CCccCCCCcccccC-ceeccCcccccHHHHHHHHH
Q 006877 248 DDFRCPISLELMKD-PVIVSTGQTYERSCIQKWLD 281 (627)
Q Consensus 248 ~~f~Cpic~~~m~d-Pv~~~cg~t~~r~ci~~~~~ 281 (627)
+=|.|..|...+.+ +....-|..||+.|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 45899999888754 34556788899999988886
No 244
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=36.48 E-value=24 Score=29.68 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=37.8
Q ss_pred CCCccCCCCccccc---CceeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 247 PDDFRCPISLELMK---DPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 247 ~~~f~Cpic~~~m~---dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
++=|.|..|...+. .+....-|..||..|..+-+. ....|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-QDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-CCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-CccChhhcCCccCc
Confidence 36699999999885 356677899999999887664 11279999988764
No 245
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=36.25 E-value=2.5e+02 Score=28.87 Aligned_cols=132 Identities=7% Similarity=0.037 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHHHhccCCCchHHHHHc-CChHHHHHhhcc--------CChhhHHHHHHHHHHHhcChhh-HHHHhh
Q 006877 477 DGTPRGKKDAATAIFNLSIYQGNKARAVRA-GIVPPLMRFLKD--------AGGGMVDEALAILAILASHQEG-KTAIGQ 546 (627)
Q Consensus 477 ~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~-g~v~~Lv~lL~~--------~~~~~~~~Al~~L~~L~~~~~~-~~~i~~ 546 (627)
+..+..+..++++++||-.++.....++.. .....+++.+.. .+..++-.+..++.|++..... +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 456788899999999999988744444433 234556665532 1334555666777788873211 10 1
Q ss_pred CCChHHHHHHHh---------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHH
Q 006877 547 AEPIPVLMEVIR---------TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGS 612 (627)
Q Consensus 547 ~g~v~~Lv~lL~---------~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~ 612 (627)
...+..+++.+. ..+++..-.++.+|.+|...++...........+....... ...+|.+.-+..
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~~~~~~~~~~~~-~~e~R~~~v~~e 423 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSY-GNVPRFKDIFDD 423 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHH-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHHHHHhc-ccchHHHHHHHh
Confidence 234456666665 24677788888889999876665444333222222222111 135666665544
No 246
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=36.14 E-value=3.2e+02 Score=27.68 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=109.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRN-ADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGT 420 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~ 420 (627)
+.+-.|+...+....+.+...+..++.+..+. +. .-..+++.++.+-...+.++|...+..|...+... ..
T Consensus 25 ~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~e 96 (386)
T 3o2t_A 25 ERVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IE 96 (386)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GG
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HH
Confidence 34444444443322357888888888876532 22 22578899999988889999998888887765421 11
Q ss_pred HhhcCChHHHHHHHccCCHHHHHHHHHHHHHh--------cCCchh----hHHhhhh-CcHHHHHHHhccCCHHHHHHHH
Q 006877 421 IVNAGAIPDIVDVLKNGSMEARENAAATLFSL--------SVIDEN----KVAIGAA-GAIPALIRLLCDGTPRGKKDAA 487 (627)
Q Consensus 421 i~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~L--------s~~~~~----~~~i~~~-g~i~~Lv~lL~~~~~~~~~~a~ 487 (627)
+ -...++.|..+|.+.++.+.+.+..+..++ +.++.. ....... ..-..++.++.+++..++..++
T Consensus 97 l-~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai 175 (386)
T 3o2t_A 97 L-LLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI 175 (386)
T ss_dssp G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 1 134577888888888888877766555444 111111 0111111 2234456667778888888888
Q ss_pred HHHHHhcc--CC---C------------------ch-----HHHHH--cCChHHHHHhhccC--ChhhHHHHHHHHHHHh
Q 006877 488 TAIFNLSI--YQ---G------------------NK-----ARAVR--AGIVPPLMRFLKDA--GGGMVDEALAILAILA 535 (627)
Q Consensus 488 ~aL~nL~~--~~---~------------------~~-----~~l~~--~g~v~~Lv~lL~~~--~~~~~~~Al~~L~~L~ 535 (627)
..+-.+.. .+ + +. ..+-. .+.+..|+.++..+ +......++..|.+|+
T Consensus 176 KFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Ia 255 (386)
T 3o2t_A 176 KFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIA 255 (386)
T ss_dssp HHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 87766431 10 0 11 12222 35677888888652 3334455667777776
Q ss_pred c
Q 006877 536 S 536 (627)
Q Consensus 536 ~ 536 (627)
.
T Consensus 256 k 256 (386)
T 3o2t_A 256 R 256 (386)
T ss_dssp H
T ss_pred H
Confidence 6
No 247
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=35.48 E-value=15 Score=33.28 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCccCCCCcccccC---ceeccCcccccHHHHHHHHHhCCC-CCCCccccccC
Q 006877 248 DDFRCPISLELMKD---PVIVSTGQTYERSCIQKWLDAGHK-TCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~d---Pv~~~cg~t~~r~ci~~~~~~~~~-~CP~~~~~l~~ 296 (627)
+=|.|..|...+.+ +....-|..||..|..+-+. .. .|+.|++++..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~--~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS--CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccc--cCCccccCCCcccc
Confidence 56999999998874 66677899999999877663 22 69999988764
No 248
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.23 E-value=15 Score=28.33 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=12.0
Q ss_pred CCCCCCccCCCCcc
Q 006877 244 PVIPDDFRCPISLE 257 (627)
Q Consensus 244 ~~~~~~f~Cpic~~ 257 (627)
..+|+++.||+|..
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 36899999999975
No 249
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=33.63 E-value=43 Score=29.97 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=33.7
Q ss_pred CCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 248 DDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 248 ~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
+=|.|..|...+.+.....-|..||..|..+-+ ...|..|+.++...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 558898898877654345678889998865533 45799998877644
No 250
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.29 E-value=14 Score=25.90 Aligned_cols=13 Identities=38% Similarity=0.925 Sum_probs=11.5
Q ss_pred CCCCCccCCCCcc
Q 006877 245 VIPDDFRCPISLE 257 (627)
Q Consensus 245 ~~~~~f~Cpic~~ 257 (627)
.+|+++.||+|..
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 6899999999975
No 251
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=32.65 E-value=14 Score=26.18 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=11.5
Q ss_pred CCCCCccCCCCcc
Q 006877 245 VIPDDFRCPISLE 257 (627)
Q Consensus 245 ~~~~~f~Cpic~~ 257 (627)
.+|+++.||+|..
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999975
No 252
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=32.11 E-value=47 Score=29.29 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=36.5
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
++=|.|..|...+.+.....-|..||..|..+-+. ..|..|+..+...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 35699999999887554456789999999877653 5698998877543
No 253
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.92 E-value=94 Score=27.11 Aligned_cols=71 Identities=11% Similarity=-0.012 Sum_probs=52.5
Q ss_pred ChHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHH-HHHhhhc-C--ChHHHHHHHHHHHHHHh
Q 006877 549 PIPVLMEVIR-TGSPRNRENAAAVLWAICTGDAE-QLKIARELDAEEA-LKELSES-G--TDRAKRKAGSILELLQR 619 (627)
Q Consensus 549 ~v~~Lv~lL~-~~~~~~~~~A~~~L~~L~~~~~~-~~~~~~~~g~i~~-L~~l~~~-~--~~~~k~~A~~lL~~l~~ 619 (627)
++..|.+-|+ ++++.++..|+.+|-.+..|.+. ....+.+...+.. |+.++.. . ...+++++..++..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4567777886 47899999999999999988644 4455666677887 7787742 2 35788888888876654
No 254
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=31.51 E-value=1.4e+02 Score=29.99 Aligned_cols=132 Identities=7% Similarity=0.041 Sum_probs=74.1
Q ss_pred cCCHHHHHHHHHHHHHhccCCCchHHHHHcC-ChHHHHHhhcc--------CChhhHHHHHHHHHHHhcChhh-HHHHhh
Q 006877 477 DGTPRGKKDAATAIFNLSIYQGNKARAVRAG-IVPPLMRFLKD--------AGGGMVDEALAILAILASHQEG-KTAIGQ 546 (627)
Q Consensus 477 ~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g-~v~~Lv~lL~~--------~~~~~~~~Al~~L~~L~~~~~~-~~~i~~ 546 (627)
+..+..+..++++++|+-.++.....++... ....+++.+.. .+..++-.+..++.|++..... +. +
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4567888999999999999887444444322 23344444421 1334555666777788873211 10 1
Q ss_pred CCChHHHHHHHh---------cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHH
Q 006877 547 AEPIPVLMEVIR---------TGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGS 612 (627)
Q Consensus 547 ~g~v~~Lv~lL~---------~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~ 612 (627)
...+..+++.+. ..+++..-.++.+|.+|...++...........+....... ...+|.+.-+..
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~~a~~~~~~~~~~~~~-~~e~R~~~v~~e 360 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSY-GNVPRFKDIFDD 360 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHTGGGCHHHHHHHHHH-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHHHHHhc-ccchHHHHHHHh
Confidence 234456666666 24677888888899999876665443333222222222111 125666655543
No 255
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=31.09 E-value=48 Score=26.45 Aligned_cols=51 Identities=20% Similarity=0.482 Sum_probs=38.1
Q ss_pred CCCCccCCCCcccccCceecc-C-c----ccccHHHHHHHHHhCCCCCCCccccccCC
Q 006877 246 IPDDFRCPISLELMKDPVIVS-T-G----QTYERSCIQKWLDAGHKTCPKTQQTLLHT 297 (627)
Q Consensus 246 ~~~~f~Cpic~~~m~dPv~~~-c-g----~t~~r~ci~~~~~~~~~~CP~~~~~l~~~ 297 (627)
+++..+|||+++....-|.+. . | .-|+...+.+....|. .=|.+|.+++..
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~s 80 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITAS 80 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTT
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHh
Confidence 456789999999999888763 2 2 2499999999888654 358888877654
No 256
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.39 E-value=2.9 Score=32.31 Aligned_cols=40 Identities=18% Similarity=0.492 Sum_probs=22.0
Q ss_pred ccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 250 FRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 250 f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
..||.|...|.. .-+..+|..|=..+ . ....||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~-~-~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDF-S-LQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEE-E-EEEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccC-C-CcccCcchhhHHH
Confidence 578998877742 12233355552211 1 1237888888774
No 257
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.32 E-value=38 Score=25.20 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCCccCCCCcccccC-ceeccCcccccH-HHHHHHHHhCCCCCCCccccc
Q 006877 247 PDDFRCPISLELMKD-PVIVSTGQTYER-SCIQKWLDAGHKTCPKTQQTL 294 (627)
Q Consensus 247 ~~~f~Cpic~~~m~d-Pv~~~cg~t~~r-~ci~~~~~~~~~~CP~~~~~l 294 (627)
++=|.|..|...+.+ +....-|..||. .|..+.+ ...|..|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCce
Confidence 356999999998875 556678899999 6976644 34588887544
No 258
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.31 E-value=33 Score=27.20 Aligned_cols=46 Identities=13% Similarity=0.379 Sum_probs=34.2
Q ss_pred CCccCCCCcccccCc-eeccCcccccHHHHHHHHHhCCCCCCCccccccC
Q 006877 248 DDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLH 296 (627)
Q Consensus 248 ~~f~Cpic~~~m~dP-v~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~~ 296 (627)
+=|.|..|...+.+. ....-|..||..|..+ .....|..|++++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 559999999888654 4456788999998644 334679999988763
No 259
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.69 E-value=17 Score=27.23 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=11.5
Q ss_pred CCCCCccCCCCcc
Q 006877 245 VIPDDFRCPISLE 257 (627)
Q Consensus 245 ~~~~~f~Cpic~~ 257 (627)
.+|+++.||+|..
T Consensus 36 ~lPddw~CP~Cga 48 (70)
T 1dx8_A 36 DLSDSFMCPACRS 48 (70)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCCCCCC
Confidence 5899999999975
No 260
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=29.13 E-value=3.7e+02 Score=25.39 Aligned_cols=145 Identities=7% Similarity=0.026 Sum_probs=86.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhChhhHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHHHhhccCCcchHHH
Q 006877 342 AAIDALLGKLANGNVEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINDSNKGTI 421 (627)
Q Consensus 342 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~nLs~~~~~k~~i 421 (627)
+.+-.|+...+....+.+...+...+.+..+.+.. . -..+++.++.+-.+.+.++|...+..+...+... .-
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~--l--l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k----~~ 86 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE--L--AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK----VE 86 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG--G--HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GG
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh--H--HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----HH
Confidence 44445555555534478888899999877653211 1 1355677788777788999998888887775321 11
Q ss_pred hhcCChHHHHHHHccCCHHHHHHHHHHHHHh--------cCCchh---hHHh-hhh-CcHHHHHHHhccCCHHHHHHHHH
Q 006877 422 VNAGAIPDIVDVLKNGSMEARENAAATLFSL--------SVIDEN---KVAI-GAA-GAIPALIRLLCDGTPRGKKDAAT 488 (627)
Q Consensus 422 ~~~g~i~~Lv~lL~~~~~e~~~~aa~~L~~L--------s~~~~~---~~~i-~~~-g~i~~Lv~lL~~~~~~~~~~a~~ 488 (627)
.....++.|..+|++.++.+.+.+..+..++ +.++.. .... ..- ..=..++.++.+++..++..+++
T Consensus 87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK 166 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK 166 (257)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence 2234577888888888888887777655443 222211 0111 111 22234555566667777777776
Q ss_pred HHHHhc
Q 006877 489 AIFNLS 494 (627)
Q Consensus 489 aL~nL~ 494 (627)
.+-.+.
T Consensus 167 F~e~vI 172 (257)
T 3gs3_A 167 FLEGVV 172 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 261
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=27.91 E-value=15 Score=21.15 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=9.0
Q ss_pred ccCCCCccccc
Q 006877 250 FRCPISLELMK 260 (627)
Q Consensus 250 f~Cpic~~~m~ 260 (627)
..||+|++.|-
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 46999999884
No 262
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.48 E-value=92 Score=27.62 Aligned_cols=14 Identities=21% Similarity=0.289 Sum_probs=9.4
Q ss_pred CCCccCCCCccccc
Q 006877 247 PDDFRCPISLELMK 260 (627)
Q Consensus 247 ~~~f~Cpic~~~m~ 260 (627)
+..+.|++|+-+..
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 35678888776553
No 263
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.85 E-value=21 Score=27.92 Aligned_cols=13 Identities=46% Similarity=0.782 Sum_probs=11.6
Q ss_pred CCCCCccCCCCcc
Q 006877 245 VIPDDFRCPISLE 257 (627)
Q Consensus 245 ~~~~~f~Cpic~~ 257 (627)
.+|+++.||+|..
T Consensus 64 dlPddW~CPvCga 76 (87)
T 1s24_A 64 DIPDDWCCPDCGA 76 (87)
T ss_dssp GCCTTCCCSSSCC
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999975
No 264
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.11 E-value=55 Score=23.76 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=22.9
Q ss_pred CCccCCCCcccccCc-eeccCcccccHHHHHHHHH
Q 006877 248 DDFRCPISLELMKDP-VIVSTGQTYERSCIQKWLD 281 (627)
Q Consensus 248 ~~f~Cpic~~~m~dP-v~~~cg~t~~r~ci~~~~~ 281 (627)
+=|.|..|...+.+- ....-|..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 457888887777653 2335677788888776664
No 265
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.64 E-value=69 Score=23.98 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=27.4
Q ss_pred CCCccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 247 PDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
+..-.|+-|.+...+.++..-|..|...| +.|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCC
Confidence 34557888888777766666776665544 56888877664
No 266
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=24.37 E-value=33 Score=23.23 Aligned_cols=40 Identities=5% Similarity=0.106 Sum_probs=22.3
Q ss_pred CccCCCCcccccCceeccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
.|.|++|...+.....+ ..-+...-......||.|+..+.
T Consensus 4 ~~~C~~C~~~f~~~~~l-------~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL-------NIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHH-------HHHHHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHH-------HHHHHHcCCCCCcCCCCCcchhC
Confidence 57899998887654221 11111111123457999987664
No 267
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=23.88 E-value=4.6e+02 Score=24.71 Aligned_cols=131 Identities=10% Similarity=0.102 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcC
Q 006877 481 RGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTG 560 (627)
Q Consensus 481 ~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~ 560 (627)
+.+...+.-...|..+.+.. .-..+++.++.+..+.+.+++.-.+..+...+.... . .-..+++.|..+++..
T Consensus 30 ~~kl~~L~qa~el~~~~dp~---ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---~-l~~~~l~~L~~Ll~d~ 102 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE---LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---E-LLPHVINVVSMLLRDN 102 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---G-GHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHccCHh---HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcCC
Confidence 45555566666655543221 123456666666656667777777777776663211 1 1123566777777766
Q ss_pred CHHHHHHHHHHHHH--------HhcCCH--HHHHHHHH--cCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 561 SPRNRENAAAVLWA--------ICTGDA--EQLKIARE--LDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 561 ~~~~~~~A~~~L~~--------L~~~~~--~~~~~~~~--~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
++.+...++.+..+ +|.++. ......++ ...-..++.+..+++..+|-.|...++.+-
T Consensus 103 d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 103 SAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 77766666554443 333321 11222222 124446667778889989988888887764
No 268
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.55 E-value=7.4 Score=38.54 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCccCCCCcccccCceec----cCc--ccccHHHHHHHHHhCCCCCCCcccc
Q 006877 247 PDDFRCPISLELMKDPVIV----STG--QTYERSCIQKWLDAGHKTCPKTQQT 293 (627)
Q Consensus 247 ~~~f~Cpic~~~m~dPv~~----~cg--~t~~r~ci~~~~~~~~~~CP~~~~~ 293 (627)
...-.||+|+....--++. .-| +-+|..|=..|-- ....||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 5677999999866544443 244 3567788777765 45679999865
No 269
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=23.28 E-value=19 Score=26.12 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=26.4
Q ss_pred hhhhHHhhhhcCCCCCh---HHHHhHHHHHHHHHHHHHHHHhcC
Q 006877 45 LSPLFEELRDGNEGLSQ---EEIKGFELLRDALDSSVELLKSTN 85 (627)
Q Consensus 45 l~~~leel~~~~~~~~~---~~~~~l~~L~~~l~~ak~Ll~~c~ 85 (627)
|..++||+... ..| ....+.+.|..-+..|+.|+..|.
T Consensus 16 LL~VIeEmgkd---IrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 16 LLAIIEELGKE---IRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHTTT---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc---cchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 44467777431 112 124578999999999999999993
No 270
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=22.40 E-value=6.8e+02 Score=26.11 Aligned_cols=81 Identities=15% Similarity=0.061 Sum_probs=58.8
Q ss_pred HhhhhCcHHHHHHHhccCCHHHHHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhccCChh---hHHHHHHHHHHHhcC
Q 006877 461 AIGAAGAIPALIRLLCDGTPRGKKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKDAGGG---MVDEALAILAILASH 537 (627)
Q Consensus 461 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~~~~~---~~~~Al~~L~~L~~~ 537 (627)
.+.+.=.+..+++-|.++.+.....|+..+. ....+..+...+++..|+.++.+++.. ++...=.++..|++.
T Consensus 111 ~VLevysve~i~~aL~S~~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd 186 (500)
T 3vld_A 111 DVLEVYSAEDLVKALRSEIDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD 186 (500)
T ss_dssp HHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCHHHHHHHHhcCChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch
Confidence 3445556778888899988899999999887 555677788889999999999875433 555666666677766
Q ss_pred hhhHHHHh
Q 006877 538 QEGKTAIG 545 (627)
Q Consensus 538 ~~~~~~i~ 545 (627)
.=.|..+.
T Consensus 187 eLirrril 194 (500)
T 3vld_A 187 ELIRRRLF 194 (500)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444444
No 271
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=21.32 E-value=3.9e+02 Score=22.87 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCCCchHHHHHcCChHHHHHhhcc------CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHH
Q 006877 483 KKDAATAIFNLSIYQGNKARAVRAGIVPPLMRFLKD------AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEV 556 (627)
Q Consensus 483 ~~~a~~aL~nL~~~~~~~~~l~~~g~v~~Lv~lL~~------~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~l 556 (627)
+...+.-+........-+..+++.|++..+-..|.. ++..++...+.+|.++ +-.+..+.+.|.-..++.+
T Consensus 37 KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l---PI~~e~Lk~SglGkvv~~l 113 (145)
T 2xpp_A 37 KIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM---KIHKEHLVTSGVGKIVYFY 113 (145)
T ss_dssp HHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS---CCCHHHHHHHCHHHHHHHH
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC---CCCHHHhhcCCCCcchhhh
Q ss_pred Hhc--CCHHHHHHHHHHH
Q 006877 557 IRT--GSPRNRENAAAVL 572 (627)
Q Consensus 557 L~~--~~~~~~~~A~~~L 572 (627)
-++ .++..|..|-.++
T Consensus 114 ~k~~~et~~nk~la~~Li 131 (145)
T 2xpp_A 114 SINPKESKEVRASAKALV 131 (145)
T ss_dssp HHCTTSCHHHHHHHHHHH
T ss_pred hcCCccCHHHHHHHHHHH
No 272
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.90 E-value=2.5e+02 Score=23.92 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=53.6
Q ss_pred ChHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHhhhcCChHHHHHHHHHHHHHH
Q 006877 549 PIPVLMEVIRTGSPRNRENAAAVLWAICTGDAEQLKIARELDAEEALKELSESGTDRAKRKAGSILELLQ 618 (627)
Q Consensus 549 ~v~~Lv~lL~~~~~~~~~~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l~~~~~~~~k~~A~~lL~~l~ 618 (627)
++..+.+.+....+.-|-.+..++-.++.+.+.........++.+.+.+.....++..+.+..+++..=.
T Consensus 44 Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 44 FVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4555666666677888888999998899876544455667788888889888889999988888776654
No 273
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.80 E-value=3.5e+02 Score=24.48 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred hHHHHHHHccCCHHHHHHHHHHHHHhcCCchhhHHhhhhCcHHHHHHHhcc------CCHHHHHHHHHHHHHhccCCCch
Q 006877 427 IPDIVDVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALIRLLCD------GTPRGKKDAATAIFNLSIYQGNK 500 (627)
Q Consensus 427 i~~Lv~lL~~~~~e~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~nL~~~~~~~ 500 (627)
++.+++.+.+ ..+..|...|..=+.-.. .+|.++..+.+ .+.......+.+...|..++.-.
T Consensus 13 f~~It~a~~~---~~r~~aL~sL~~D~gL~~---------LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~ 80 (196)
T 4atg_A 13 FDKILSMIKS---DMKDIAIECLEKESGLQQ---------LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVF 80 (196)
T ss_dssp HHHHHHHHTS---TTHHHHHHHHHHCSSCTT---------THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHh---HHHHHHHHHHhcCCChhh---------hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCC
Q ss_pred HHHHHcCChHHHHHhhcc---CChhhHHHHHHHHHHHhcChhhHHHHhhCCChHHHHHHHhcCC--HHHHHHHHHHHHHH
Q 006877 501 ARAVRAGIVPPLMRFLKD---AGGGMVDEALAILAILASHQEGKTAIGQAEPIPVLMEVIRTGS--PRNRENAAAVLWAI 575 (627)
Q Consensus 501 ~~l~~~g~v~~Lv~lL~~---~~~~~~~~Al~~L~~L~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~~A~~~L~~L 575 (627)
..-.=+-.+|+++..+-. +...+++.|..+|+.+|..-.....-.....+..+.+.+.+++ ....--|+..|..+
T Consensus 81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
No 274
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.75 E-value=43 Score=24.82 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=22.8
Q ss_pred CCCccCCCCccccc--CceeccCcccccHHHHHHHHH
Q 006877 247 PDDFRCPISLELMK--DPVIVSTGQTYERSCIQKWLD 281 (627)
Q Consensus 247 ~~~f~Cpic~~~m~--dPv~~~cg~t~~r~ci~~~~~ 281 (627)
++=|.|..|...+. +.....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 34588888887775 344455667788877665443
No 275
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.59 E-value=72 Score=23.04 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=22.9
Q ss_pred CCccCCCCcccccC-ceeccCcccccHHHHHHHH
Q 006877 248 DDFRCPISLELMKD-PVIVSTGQTYERSCIQKWL 280 (627)
Q Consensus 248 ~~f~Cpic~~~m~d-Pv~~~cg~t~~r~ci~~~~ 280 (627)
+=|.|..|...+.+ +....-|..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 45888888877754 3445667788888876654
No 276
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.10 E-value=57 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.8
Q ss_pred CccCCCCcccccCce-eccCcccccHHHHHHHHHhCCCCCCCcccccc
Q 006877 249 DFRCPISLELMKDPV-IVSTGQTYERSCIQKWLDAGHKTCPKTQQTLL 295 (627)
Q Consensus 249 ~f~Cpic~~~m~dPv-~~~cg~t~~r~ci~~~~~~~~~~CP~~~~~l~ 295 (627)
...|+-|.+...+.. +..-|..|...| +.|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 458999998887763 557787777765 56888988885
Done!