Query 006878
Match_columns 627
No_of_seqs 407 out of 2167
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 15:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2310 DNA repair exonuclease 100.0 2E-136 3E-141 1093.5 42.7 573 7-618 8-593 (646)
2 TIGR00583 mre11 DNA repair pro 100.0 4.7E-93 1E-97 769.1 38.4 386 10-404 1-404 (405)
3 COG0420 SbcD DNA repair exonuc 100.0 1.5E-34 3.3E-39 313.4 26.3 260 13-324 1-273 (390)
4 PRK10966 exonuclease subunit S 100.0 7.4E-33 1.6E-37 301.7 30.1 316 13-403 1-347 (407)
5 PF04152 Mre11_DNA_bind: Mre11 100.0 9.5E-34 2.1E-38 275.7 10.4 154 302-455 1-175 (175)
6 PHA02546 47 endonuclease subun 100.0 3.9E-30 8.4E-35 274.6 31.4 232 13-320 1-242 (340)
7 TIGR00619 sbcd exonuclease Sbc 100.0 4.7E-28 1E-32 248.7 19.2 227 13-291 1-253 (253)
8 cd00840 MPP_Mre11_N Mre11 nucl 99.9 4.1E-26 8.9E-31 226.4 20.8 215 14-283 1-223 (223)
9 cd07385 MPP_YkuE_C Bacillus su 99.8 1E-17 2.3E-22 167.0 18.2 169 12-260 1-169 (223)
10 PRK11340 phosphodiesterase Yae 99.7 2.6E-16 5.6E-21 163.4 17.3 172 8-260 45-217 (271)
11 PRK11148 cyclic 3',5'-adenosin 99.6 2.7E-14 5.8E-19 148.2 18.6 86 9-131 11-98 (275)
12 PF12850 Metallophos_2: Calcin 99.6 3.7E-15 8E-20 139.6 6.8 75 218-300 81-156 (156)
13 cd07402 MPP_GpdQ Enterobacter 99.5 2.8E-14 6E-19 143.9 11.6 197 14-277 1-210 (240)
14 cd07400 MPP_YydB Bacillus subt 99.5 5E-14 1.1E-18 131.4 11.9 80 15-130 1-80 (144)
15 cd07395 MPP_CSTP1 Homo sapiens 99.5 8.7E-13 1.9E-17 135.5 20.9 226 11-308 3-261 (262)
16 PRK09453 phosphodiesterase; Pr 99.5 4.3E-13 9.2E-18 131.0 16.1 172 13-315 1-176 (182)
17 cd07388 MPP_Tt1561 Thermus the 99.5 7.5E-13 1.6E-17 134.0 15.6 201 11-301 3-220 (224)
18 TIGR00040 yfcE phosphoesterase 99.5 1.1E-12 2.3E-17 125.1 14.5 52 244-303 105-156 (158)
19 cd00841 MPP_YfcE Escherichia c 99.4 1.6E-12 3.5E-17 122.8 15.0 54 244-306 101-154 (155)
20 cd07394 MPP_Vps29 Homo sapiens 99.4 5E-12 1.1E-16 123.7 18.2 63 244-311 105-168 (178)
21 PF00149 Metallophos: Calcineu 99.4 1.8E-13 4E-18 124.6 5.7 79 13-132 1-79 (200)
22 cd07396 MPP_Nbla03831 Homo sap 99.4 1.1E-11 2.3E-16 128.4 18.5 86 13-133 1-88 (267)
23 cd07392 MPP_PAE1087 Pyrobaculu 99.4 1.6E-12 3.4E-17 125.5 10.5 66 15-132 1-66 (188)
24 PRK05340 UDP-2,3-diacylglucosa 99.4 6.7E-12 1.5E-16 128.0 15.3 81 13-132 1-84 (241)
25 cd07401 MPP_TMEM62_N Homo sapi 99.4 2.1E-11 4.5E-16 125.7 17.2 47 15-67 2-49 (256)
26 COG2129 Predicted phosphoester 99.4 3.8E-11 8.1E-16 119.9 18.2 202 11-306 2-223 (226)
27 cd07393 MPP_DR1119 Deinococcus 99.3 1.4E-11 3E-16 125.2 15.1 79 15-131 1-84 (232)
28 cd07383 MPP_Dcr2 Saccharomyces 99.3 9.1E-12 2E-16 123.1 13.3 88 11-130 1-88 (199)
29 TIGR03729 acc_ester putative p 99.3 3.5E-11 7.6E-16 122.4 12.8 74 14-131 1-74 (239)
30 cd07399 MPP_YvnB Bacillus subt 99.3 2.3E-10 5E-15 114.9 17.5 80 13-129 1-80 (214)
31 TIGR01854 lipid_A_lpxH UDP-2,3 99.2 5.5E-11 1.2E-15 120.6 11.7 79 15-132 1-82 (231)
32 COG0622 Predicted phosphoester 99.2 2.1E-10 4.6E-15 111.7 14.9 59 244-310 108-166 (172)
33 COG1408 Predicted phosphohydro 99.2 3E-10 6.5E-15 118.9 13.1 94 8-147 40-134 (284)
34 cd00845 MPP_UshA_N_like Escher 99.1 7.1E-10 1.5E-14 113.2 13.9 212 13-276 1-223 (252)
35 cd00839 MPP_PAPs purple acid p 99.1 3.7E-09 7.9E-14 110.1 17.4 81 10-133 2-83 (294)
36 cd07397 MPP_DevT Myxococcus xa 99.0 2E-09 4.3E-14 109.8 13.4 65 13-133 1-65 (238)
37 cd07378 MPP_ACP5 Homo sapiens 99.0 1.2E-08 2.5E-13 105.6 19.2 104 201-309 153-275 (277)
38 COG1409 Icc Predicted phosphoh 99.0 1.9E-09 4E-14 110.8 12.2 80 13-133 1-80 (301)
39 cd07386 MPP_DNA_pol_II_small_a 99.0 3.6E-09 7.8E-14 108.0 13.8 46 16-65 2-49 (243)
40 cd07391 MPP_PF1019 Pyrococcus 99.0 5.8E-10 1.3E-14 108.1 7.6 83 16-131 1-88 (172)
41 PRK04036 DNA polymerase II sma 99.0 1.7E-08 3.8E-13 113.7 20.2 49 9-64 240-297 (504)
42 cd07404 MPP_MS158 Microscilla 99.0 2.2E-09 4.7E-14 102.9 10.9 42 15-67 1-42 (166)
43 cd07379 MPP_239FB Homo sapiens 99.0 1.9E-09 4.2E-14 100.0 10.1 47 14-81 1-47 (135)
44 PF14582 Metallophos_3: Metall 99.0 5.2E-09 1.1E-13 104.7 12.7 228 12-305 5-253 (255)
45 cd07410 MPP_CpdB_N Escherichia 99.0 9.1E-09 2E-13 107.0 15.2 217 13-276 1-246 (277)
46 TIGR00024 SbcD_rel_arch putati 98.9 3.4E-09 7.4E-14 107.6 7.8 83 13-131 15-102 (225)
47 cd07398 MPP_YbbF-LpxH Escheric 98.9 4.1E-09 8.8E-14 104.7 8.0 43 16-64 1-43 (217)
48 cd07406 MPP_CG11883_N Drosophi 98.9 2E-08 4.3E-13 103.7 13.4 212 13-276 1-222 (257)
49 cd07411 MPP_SoxB_N Thermus the 98.8 4.9E-08 1.1E-12 101.0 13.8 213 13-276 1-237 (264)
50 cd07390 MPP_AQ1575 Aquifex aeo 98.8 2.4E-08 5.2E-13 96.5 10.0 77 16-132 2-83 (168)
51 cd07408 MPP_SA0022_N Staphyloc 98.8 1.7E-07 3.7E-12 96.6 16.6 217 13-276 1-231 (257)
52 cd07412 MPP_YhcR_N Bacillus su 98.7 1.7E-07 3.6E-12 98.5 15.3 52 13-65 1-56 (288)
53 cd00838 MPP_superfamily metall 98.7 9.1E-08 2E-12 85.0 9.9 69 16-129 1-69 (131)
54 cd08165 MPP_MPPE1 human MPPE1 98.7 4.8E-08 1E-12 93.6 8.1 86 16-131 1-89 (156)
55 cd07409 MPP_CD73_N CD73 ecto-5 98.6 4.2E-07 9E-12 95.1 14.4 199 13-258 1-219 (281)
56 cd07384 MPP_Cdc1_like Saccharo 98.6 1.3E-07 2.8E-12 92.0 7.4 90 16-131 1-100 (171)
57 KOG1432 Predicted DNA repair e 98.5 7.9E-07 1.7E-11 93.6 12.9 97 7-136 48-152 (379)
58 PLN02533 probable purple acid 98.5 1.1E-06 2.4E-11 97.3 13.9 75 10-131 137-211 (427)
59 PTZ00422 glideosome-associated 98.5 1.1E-05 2.4E-10 88.0 20.9 99 217-322 213-329 (394)
60 cd07403 MPP_TTHA0053 Thermus t 98.5 3.5E-07 7.6E-12 84.9 8.1 33 16-62 1-33 (129)
61 KOG2679 Purple (tartrate-resis 98.5 2.1E-06 4.6E-11 87.9 13.8 245 8-310 39-318 (336)
62 cd07405 MPP_UshA_N Escherichia 98.4 9.2E-06 2E-10 85.3 18.1 201 13-259 1-223 (285)
63 cd08163 MPP_Cdc1 Saccharomyces 98.4 2.7E-06 5.9E-11 88.1 13.0 57 48-133 42-99 (257)
64 PRK09419 bifunctional 2',3'-cy 98.4 4.8E-06 1E-10 102.7 15.7 211 10-276 658-897 (1163)
65 cd08164 MPP_Ted1 Saccharomyces 98.4 5.4E-06 1.2E-10 82.3 13.0 41 40-80 32-73 (193)
66 COG1407 Predicted ICC-like pho 98.3 1E-06 2.3E-11 89.4 7.4 57 12-68 19-80 (235)
67 cd00842 MPP_ASMase acid sphing 98.2 3.6E-06 7.7E-11 88.3 9.1 65 35-132 50-123 (296)
68 COG0737 UshA 5'-nucleotidase/2 98.2 0.00014 3.1E-09 82.5 20.8 235 8-300 22-280 (517)
69 PHA02239 putative protein phos 98.1 6.8E-06 1.5E-10 84.1 8.2 53 13-77 1-55 (235)
70 COG2908 Uncharacterized protei 98.1 5E-06 1.1E-10 84.3 5.7 79 16-133 1-82 (237)
71 cd07407 MPP_YHR202W_N Saccharo 98.0 8.7E-05 1.9E-09 78.0 14.4 55 217-276 188-247 (282)
72 COG1311 HYS2 Archaeal DNA poly 98.0 2.2E-05 4.8E-10 86.4 9.5 55 6-64 219-275 (481)
73 cd07387 MPP_PolD2_C PolD2 (DNA 98.0 0.00034 7.3E-09 72.6 17.0 46 14-66 1-57 (257)
74 cd08166 MPP_Cdc1_like_1 unchar 98.0 3.5E-05 7.5E-10 76.7 9.2 57 46-131 37-93 (195)
75 PRK09558 ushA bifunctional UDP 97.9 0.00011 2.4E-09 84.0 14.4 207 6-258 28-258 (551)
76 cd08162 MPP_PhoA_N Synechococc 97.9 0.0002 4.2E-09 76.5 15.0 47 13-65 1-52 (313)
77 TIGR01390 CycNucDiestase 2',3' 97.9 0.00025 5.4E-09 82.4 16.9 54 12-65 2-60 (626)
78 PRK09419 bifunctional 2',3'-cy 97.9 0.00026 5.7E-09 87.7 17.5 55 11-65 40-99 (1163)
79 PRK09418 bifunctional 2',3'-cy 97.9 0.00034 7.4E-09 82.8 17.6 56 10-65 37-97 (780)
80 TIGR01530 nadN NAD pyrophospha 97.9 0.00014 3.1E-09 83.2 14.0 195 13-259 1-220 (550)
81 PRK11907 bifunctional 2',3'-cy 97.9 0.00079 1.7E-08 80.0 20.2 54 12-65 115-173 (814)
82 PRK00166 apaH diadenosine tetr 97.9 2.8E-05 6E-10 81.5 7.0 68 13-131 1-69 (275)
83 KOG3662 Cell division control 97.9 7.9E-05 1.7E-09 81.2 10.7 99 5-135 41-148 (410)
84 cd07425 MPP_Shelphs Shewanella 97.8 3.2E-05 7E-10 77.7 7.1 72 16-131 1-80 (208)
85 PRK09420 cpdB bifunctional 2', 97.8 0.00043 9.4E-09 80.7 17.2 56 10-65 23-83 (649)
86 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.8 0.00031 6.8E-09 73.1 13.8 17 116-132 71-87 (262)
87 COG4186 Predicted phosphoester 97.7 0.00051 1.1E-08 65.6 12.1 68 11-82 2-72 (186)
88 cd07424 MPP_PrpA_PrpB PrpA and 97.7 7.2E-05 1.6E-09 74.7 6.2 44 13-68 1-45 (207)
89 cd07423 MPP_PrpE Bacillus subt 97.6 9E-05 2E-09 75.5 6.6 54 13-82 1-64 (234)
90 cd00144 MPP_PPP_family phospho 97.5 0.00019 4.1E-09 71.8 6.2 67 17-131 2-68 (225)
91 cd07422 MPP_ApaH Escherichia c 97.3 0.00041 8.8E-09 72.1 6.5 66 15-131 1-67 (257)
92 PRK11439 pphA serine/threonine 97.3 0.00033 7.2E-09 70.7 5.7 52 13-80 17-69 (218)
93 PRK09968 serine/threonine-spec 97.3 0.00045 9.8E-09 69.9 6.2 44 14-69 16-60 (218)
94 PRK13625 bis(5'-nucleosyl)-tet 97.2 0.00053 1.2E-08 70.5 6.4 52 13-76 1-61 (245)
95 TIGR03767 P_acnes_RR metalloph 97.1 0.0097 2.1E-07 66.6 15.0 105 200-315 323-450 (496)
96 COG1768 Predicted phosphohydro 97.0 0.0037 8E-08 61.1 9.0 41 217-257 158-199 (230)
97 TIGR00668 apaH bis(5'-nucleosy 97.0 0.0015 3.2E-08 68.6 6.7 53 13-81 1-54 (279)
98 KOG1378 Purple acid phosphatas 96.8 0.009 1.9E-07 66.1 11.6 79 9-132 144-222 (452)
99 cd07382 MPP_DR1281 Deinococcus 96.8 0.052 1.1E-06 56.5 16.7 190 14-276 1-197 (255)
100 cd07413 MPP_PA3087 Pseudomonas 96.7 0.0024 5.2E-08 64.8 6.0 51 16-82 2-60 (222)
101 cd07421 MPP_Rhilphs Rhilph pho 96.7 0.0046 1E-07 65.3 8.2 52 14-81 3-60 (304)
102 KOG3325 Membrane coat complex 96.6 0.005 1.1E-07 58.4 6.2 80 217-302 78-161 (183)
103 smart00156 PP2Ac Protein phosp 96.3 0.0096 2.1E-07 62.4 7.2 52 13-76 28-79 (271)
104 PF09587 PGA_cap: Bacterial ca 96.3 0.08 1.7E-06 54.5 13.7 137 116-259 73-230 (250)
105 KOG3770 Acid sphingomyelinase 96.1 0.024 5.1E-07 64.4 9.3 94 11-131 137-263 (577)
106 cd07381 MPP_CapA CapA and rela 96.0 0.053 1.1E-06 55.3 10.7 133 117-258 76-220 (239)
107 PF04042 DNA_pol_E_B: DNA poly 95.9 0.0073 1.6E-07 60.1 4.1 47 15-68 1-48 (209)
108 TIGR00282 metallophosphoestera 95.9 0.14 2.9E-06 53.7 13.4 188 13-272 1-196 (266)
109 cd07416 MPP_PP2B PP2B, metallo 95.7 0.026 5.6E-07 60.2 7.5 51 13-75 43-93 (305)
110 smart00854 PGA_cap Bacterial c 95.5 0.1 2.2E-06 53.3 10.8 132 117-258 72-218 (239)
111 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.3 0.032 7E-07 58.9 6.1 49 14-74 43-91 (285)
112 cd07414 MPP_PP1_PPKL PP1, PPKL 95.0 0.049 1.1E-06 57.8 6.8 49 14-74 51-99 (293)
113 PTZ00480 serine/threonine-prot 95.0 0.042 9.2E-07 58.9 6.2 48 14-73 60-107 (320)
114 PTZ00239 serine/threonine prot 94.2 0.09 2E-06 56.1 6.3 49 14-74 44-92 (303)
115 PTZ00244 serine/threonine-prot 94.2 0.074 1.6E-06 56.5 5.6 47 15-73 54-100 (294)
116 cd07380 MPP_CWF19_N Schizosacc 94.0 0.15 3.3E-06 48.9 6.8 46 48-129 23-68 (150)
117 cd07418 MPP_PP7 PP7, metalloph 93.9 0.13 2.8E-06 56.4 6.9 49 14-74 67-116 (377)
118 cd07417 MPP_PP5_C PP5, C-termi 93.6 0.14 3.1E-06 54.9 6.4 53 12-76 59-112 (316)
119 cd07420 MPP_RdgC Drosophila me 93.5 0.17 3.8E-06 54.3 6.9 49 14-74 52-101 (321)
120 cd07419 MPP_Bsu1_C Arabidopsis 93.1 0.23 5E-06 53.1 7.1 49 14-74 49-105 (311)
121 PF05918 API5: Apoptosis inhib 92.6 0.034 7.3E-07 63.5 0.0 9 522-530 458-466 (556)
122 KOG2863 RNA lariat debranching 92.4 0.55 1.2E-05 50.7 8.5 80 13-132 1-89 (456)
123 KOG3428 Small nuclear ribonucl 90.4 0.13 2.8E-06 46.2 1.3 15 584-598 95-109 (109)
124 TIGR03768 RPA4764 metallophosp 90.0 1.4 3.1E-05 49.4 9.2 111 10-132 34-171 (492)
125 PF05918 API5: Apoptosis inhib 87.7 0.73 1.6E-05 52.9 5.1 13 39-51 60-72 (556)
126 KOG4419 5' nucleotidase [Nucle 82.3 9 0.0002 44.2 10.5 57 10-66 40-102 (602)
127 KOG3973 Uncharacterized conser 71.6 29 0.00063 37.6 9.9 26 433-459 211-236 (465)
128 KOG2476 Uncharacterized conser 70.3 18 0.00039 40.7 8.3 94 13-155 6-100 (528)
129 PTZ00235 DNA polymerase epsilo 65.6 17 0.00037 38.7 6.8 46 11-64 26-76 (291)
130 PF06874 FBPase_2: Firmicute f 63.3 6.9 0.00015 45.4 3.7 37 42-82 175-211 (640)
131 TIGR01769 GGGP geranylgeranylg 61.5 33 0.00071 34.7 7.8 57 38-132 11-67 (205)
132 KOG3947 Phosphoesterases [Gene 60.4 85 0.0018 33.4 10.6 45 5-67 54-98 (305)
133 KOG3428 Small nuclear ribonucl 58.7 5.2 0.00011 36.2 1.3 11 584-594 99-109 (109)
134 PF09423 PhoD: PhoD-like phosp 56.4 14 0.00031 41.3 4.7 41 10-62 103-143 (453)
135 PTZ00034 40S ribosomal protein 47.0 16 0.00035 34.0 2.6 13 456-468 4-16 (124)
136 TIGR01768 GGGP-family geranylg 46.7 55 0.0012 33.6 6.7 54 40-132 16-69 (223)
137 PRK09982 universal stress prot 46.5 43 0.00093 30.9 5.5 19 40-58 92-110 (142)
138 PF01884 PcrB: PcrB family; I 46.0 43 0.00094 34.5 5.8 52 41-132 22-73 (230)
139 KOG0373 Serine/threonine speci 44.8 49 0.0011 34.0 5.8 55 15-81 48-102 (306)
140 PTZ00070 40S ribosomal protein 44.6 17 0.00037 37.9 2.6 7 589-595 22-28 (257)
141 KOG0374 Serine/threonine speci 44.6 38 0.00083 36.8 5.4 46 14-71 60-106 (331)
142 COG1646 Predicted phosphate-bi 43.8 78 0.0017 32.8 7.1 56 40-133 30-85 (240)
143 KOG0372 Serine/threonine speci 42.8 46 0.001 34.8 5.4 47 15-73 45-91 (303)
144 TIGR01648 hnRNP-R-Q heterogene 41.4 19 0.00041 42.0 2.7 12 425-436 246-257 (578)
145 PF07355 GRDB: Glycine/sarcosi 38.8 66 0.0014 35.2 6.1 54 10-73 48-101 (349)
146 PRK10590 ATP-dependent RNA hel 37.6 31 0.00067 38.7 3.6 15 68-82 49-63 (456)
147 PF07451 SpoVAD: Stage V sporu 37.2 41 0.00089 36.2 4.1 20 48-68 69-88 (329)
148 COG3855 Fbp Uncharacterized pr 36.0 39 0.00085 38.1 3.9 34 45-82 184-217 (648)
149 TIGR02855 spore_yabG sporulati 34.1 43 0.00093 35.4 3.6 79 41-124 143-240 (283)
150 PF00072 Response_reg: Respons 33.2 67 0.0014 27.3 4.3 53 39-130 31-83 (112)
151 PRK10116 universal stress prot 33.1 1.1E+02 0.0024 27.6 6.0 20 40-59 91-110 (142)
152 PRK15005 universal stress prot 32.9 97 0.0021 28.0 5.6 19 40-58 96-114 (144)
153 TIGR00640 acid_CoA_mut_C methy 31.9 1.8E+02 0.0038 27.2 7.1 40 38-81 40-79 (132)
154 cd02071 MM_CoA_mut_B12_BD meth 31.6 2.6E+02 0.0057 25.3 8.1 38 40-81 39-76 (122)
155 PRK09968 serine/threonine-spec 31.4 43 0.00093 33.8 3.1 30 245-278 179-208 (218)
156 TIGR02667 moaB_proteo molybden 31.2 1.8E+02 0.0039 28.1 7.3 40 34-73 45-86 (163)
157 KOG2310 DNA repair exonuclease 31.0 53 0.0011 37.9 3.9 29 455-483 481-509 (646)
158 KOG4501 Transcription coactiva 30.8 37 0.00081 38.9 2.7 19 582-600 666-684 (707)
159 cd02812 PcrB_like PcrB_like pr 30.7 1.4E+02 0.003 30.6 6.6 55 40-132 14-68 (219)
160 COG2908 Uncharacterized protei 29.7 78 0.0017 32.8 4.6 48 240-302 182-229 (237)
161 PRK04169 geranylgeranylglycery 29.6 1.3E+02 0.0029 31.0 6.3 49 44-132 25-74 (232)
162 KOG3293 Small nuclear ribonucl 29.3 64 0.0014 29.9 3.5 9 491-499 73-81 (134)
163 TIGR01501 MthylAspMutase methy 29.2 2E+02 0.0042 27.2 6.9 40 39-82 40-79 (134)
164 KOG0921 Dosage compensation co 28.1 55 0.0012 40.0 3.6 19 503-521 1131-1149(1282)
165 COG2248 Predicted hydrolase (m 27.8 76 0.0017 33.4 4.1 59 11-83 175-235 (304)
166 cd07424 MPP_PrpA_PrpB PrpA and 26.7 60 0.0013 32.2 3.2 29 245-277 168-196 (207)
167 cd07389 MPP_PhoD Bacillus subt 26.6 1.2E+02 0.0025 30.2 5.3 19 116-134 87-105 (228)
168 PF14639 YqgF: Holliday-juncti 26.3 1.4E+02 0.0031 28.6 5.5 20 41-60 53-72 (150)
169 PHA01794 hypothetical protein 26.2 1.2E+02 0.0026 28.5 4.6 18 442-459 49-66 (134)
170 KOG0835 Cyclin L [General func 26.1 2E+02 0.0044 31.3 7.0 15 69-83 41-55 (367)
171 cd02067 B12-binding B12 bindin 26.0 2.4E+02 0.0053 25.0 6.8 40 39-82 38-77 (119)
172 PF10686 DUF2493: Protein of u 25.4 1.7E+02 0.0038 24.4 5.2 39 11-60 2-40 (71)
173 TIGR01917 gly_red_sel_B glycin 25.2 1.8E+02 0.0039 32.8 6.7 53 9-71 43-95 (431)
174 TIGR01918 various_sel_PB selen 25.0 1.8E+02 0.0039 32.7 6.7 52 10-71 44-95 (431)
175 PF05582 Peptidase_U57: YabG p 24.8 80 0.0017 33.6 3.8 79 41-124 144-241 (287)
176 cd00019 AP2Ec AP endonuclease 24.4 3E+02 0.0065 28.3 8.0 70 12-83 59-129 (279)
177 cd02072 Glm_B12_BD B12 binding 23.8 5.2E+02 0.011 24.2 8.6 40 39-82 38-77 (128)
178 PRK11475 DNA-binding transcrip 23.5 1.7E+02 0.0036 29.4 5.7 40 39-81 25-64 (207)
179 TIGR01319 glmL_fam conserved h 23.1 1E+02 0.0022 35.1 4.3 65 45-151 114-178 (463)
180 cd00886 MogA_MoaB MogA_MoaB fa 21.2 5E+02 0.011 24.5 8.3 40 35-74 44-85 (152)
No 1
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-136 Score=1093.47 Aligned_cols=573 Identities=51% Similarity=0.855 Sum_probs=505.3
Q ss_pred CCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 006878 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
++-+++||||++||+||||.++|++|++|+|.||+||+.+|++++|||||++|||||+|+||++++++|+++||+||+||
T Consensus 8 ~D~entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgd 87 (646)
T KOG2310|consen 8 DDFENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGD 87 (646)
T ss_pred cccccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCC
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccceeeechhhhhccc-ccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce
Q 006878 87 RPVQFQVVSDQAVNFQN-KFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f~~-~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (627)
+||+||+||||++||.+ .|.+|||+|||+|++||||.||||||+|+|.+.+||+|+|+.+|||||||++ +++++|
T Consensus 88 kP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~----~~id~I 163 (646)
T KOG2310|consen 88 KPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKV----SEIDKI 163 (646)
T ss_pred CceeeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccc----cCcceE
Confidence 99999999999999986 5999999999999999999999999999999999999999999999999996 367999
Q ss_pred eEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcC
Q 006878 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (627)
Q Consensus 166 ~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~ 245 (627)
.++||+++||.|++||||||+++|+||.++|.+ ++|.|++|+.. .++|||+|++|||+..|++++++||+++|+|
T Consensus 164 ~vsPiLlqKG~tklALYGLg~irDeRL~R~Fk~-~~V~f~rPe~~----e~dWFNllvlHQNr~~h~~tn~lpE~flp~F 238 (646)
T KOG2310|consen 164 DVSPILLQKGSTKLALYGLGSIRDERLYRMFKN-GKVTFLRPEEY----EDDWFNLLVLHQNRSKHRPTNFLPEQFLPDF 238 (646)
T ss_pred EEEeeeeccCceeEEEeeccccchHHHHHHHHh-CceEEecCccc----cccceeeEEEeecccCCCCcccCcHhHhhhh
Confidence 999999999999999999999999999999998 78999999864 3799999999999999999999999999999
Q ss_pred CCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEeccC
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDE 325 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L~~~ 325 (627)
+|+|+|||+|+|.|.|++++.++|+|+||||+|+||+++||+.+|+|+||+|.|++++.++|||.|||||++.+|.|.+.
T Consensus 239 ~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~Ikg~~~~l~~IpL~TVRpf~~~~ivL~d~ 318 (646)
T KOG2310|consen 239 LDLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLRIKGRKFKLEKIPLRTVRPFVMDDIVLADH 318 (646)
T ss_pred hhheeeccccccccCcccccccceeeecCCCccccccCcccccCceEEEEEecCCcccccccccceecceeeeeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC----CCCCCHhHHHHHHHHHHHHHHHHhhhccccc-ccCCCCeEEEEEeecc-ccccChhhhhhhhhhcccCccceEE
Q 006878 326 AD----IDPDDQNSILEHLDKVVRNLIERSSKKTVNR-SELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVANPQDILI 399 (627)
Q Consensus 326 ~~----~~~~~~~~i~~~l~~~v~~~i~~a~~~~~~~-~~~~~PLiRLrV~~sg-~~~~n~~rfg~~f~~~vaNp~dil~ 399 (627)
.+ +.|.....+.+++.++|++||+.|.+++..+ .++++|||||||+|+| |+++||+|||++|+|+||||+|||+
T Consensus 319 ~~~~~~i~p~~~~~i~~~~~e~veemI~~A~~q~~~~~~~p~lPLIRLrVdYsg~~~~~n~~RFs~rfvgrVAN~~Dvv~ 398 (646)
T KOG2310|consen 319 PDILNPIRPKVTDGILSFLIEKVEEMIETAEAQRLGRSGQPELPLIRLRVDYSGDFEPFNPQRFSQRFVGRVANPQDVVQ 398 (646)
T ss_pred CccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEecCCccccCHHHHhHhhhhcccChhheEE
Confidence 87 7788888899999999999999998876544 4699999999999999 8999999999999999999999999
Q ss_pred EEecccccccccccccccccCcccchhhhHHHHHHhh----cccccccCCCcHHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 006878 400 FSKSSKKSKAEAKIDDFERLRPEELNQQNIEALVAEN----NLKMEIIPVNDLDVALHNFVNKDDRLAFYSCVQYNLQET 475 (627)
Q Consensus 400 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~l~~l~~~~l~~a~~~fv~k~d~~a~~~~v~~~~~~~ 475 (627)
|+|++|+.+++...++.+.++++++++.+++.||.++ +.+|++|++.+|++||++||+|||++||++||+++|+++
T Consensus 399 f~k~~kk~rte~~~~~t~~~~~~e~~~~~ve~Lvn~y~~~~n~ql~lL~~~gl~eal~~fv~kdek~A~~~~V~~~iek~ 478 (646)
T KOG2310|consen 399 FSKKRKKTRTEEVNNGTEALRPEEGNQLRVETLVNQYTAESNVQLSLLPERGLGEALQEFVDKDEKDAFEECVKYQIEKV 478 (646)
T ss_pred EeecccccccccccccchhccccccchhhHHHHHhhhhhccccceeeeccccHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 9998887777666677788889999999999999554 789999999999999999999999999999999999988
Q ss_pred HHHHhhcCCccccchhhHHHHHHHHHHHHHhh--hcCCCCCCCCCCcccccccccccccccCcccceeccCCcccccccC
Q 006878 476 RHKIAKDSDTAKFEEEDIILKVGESLEERLKE--RSNHSKDAPQSTSNAASFEDIRSKTAAGVGTAISFSDDEDTTQISD 553 (627)
Q Consensus 476 ~~~~~~~~~~~~~~~~d~i~~~~~~~~er~~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sd~e~~~~~~~ 553 (627)
++ +.+++.+.++.+++.|.|+. +.++...+++ -.+++..+.++..+. ..+|++|.....|+
T Consensus 479 ~~----------~~~~~~~~~~~E~i~~~lk~~~r~~~~~~t~~-~e~~e~~e~~~~~~~------~~~s~~e~~~~~s~ 541 (646)
T KOG2310|consen 479 QR----------FNEEDHIDKVEENIDEELKRFKRATRKRGTNP-KEDDETREALTEGSA------LRSSNEESASGFSS 541 (646)
T ss_pred cc----------cchhhhcchHHHHHHHHHHHHHhhhccCCCCc-Cchhhhhhhhccccc------ccccccccccccCc
Confidence 43 45678889999999999888 6666665555 333455555444432 46777777777776
Q ss_pred ccccccCCcccccccccccCcccccCcccCCCCCCCCCCCCCCCCCccccccccccccccccccc
Q 006878 554 TKSATRGRKWSSAASRSSRGALESDKSKTSTRGRGRGRGRGRGRGANNLKQTTLDASLGFRQSQR 618 (627)
Q Consensus 554 ~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rgr~~~~~~~~~~~~~~~~~~~~~~~ 618 (627)
.-.-..++-.|+++..| +.....++|||||||++..+..+++-|+||+.++.
T Consensus 542 ~~~~s~~~~~S~~~~~~-------------~~s~~pt~~rgr~r~~~~~r~~~~~ss~g~s~~~~ 593 (646)
T KOG2310|consen 542 DLLMSHEELGSSIANDS-------------SVSAAPTKGRGRGRGRRGKRGQNSDSSLGFSRTRA 593 (646)
T ss_pred ccccccchhhhhhcccc-------------chhcCCCcccccccccccccCCccccccchhhhcc
Confidence 66666555555543222 22223344444444444444566667777777655
No 2
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=100.00 E-value=4.7e-93 Score=769.13 Aligned_cols=386 Identities=49% Similarity=0.889 Sum_probs=356.8
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcc
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~ 89 (627)
+|+|||||+||||||+.+.++.|++|++.+|++++++|++++||+||+||||||.++||.+++++++++|++||+||+||
T Consensus 1 ~~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~ 80 (405)
T TIGR00583 1 EDTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPC 80 (405)
T ss_pred CCceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeechhhhhcc-cccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEE
Q 006878 90 QFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (627)
Q Consensus 90 ~~~~lsd~~~~f~-~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~ 168 (627)
+|++|||++.||. +.|+++||+|||++++||||+||||||+|.+.+.++++++|+.+|++++||+.. ..+.+.++
T Consensus 81 ~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~~~~~~~l~lL~~~Glvnifgk~~----~~~~i~~~ 156 (405)
T TIGR00583 81 ELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGLLCALDLLHATGLVNYFGKVP----EIDNIIVS 156 (405)
T ss_pred chhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccccccccHHHHHHhCCCEEEecccc----ccccceee
Confidence 9999999999998 489999999999999999999999999999887789999999999999999853 34678899
Q ss_pred EEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcCCCE
Q 006878 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (627)
Q Consensus 169 Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~~Dy 248 (627)
|+++++|.++++|||+||++++++.++|.+ +++.++.|... .++|||||++||++.++.+.++++++++|.++||
T Consensus 157 Pvll~kg~~~valyGl~~~~d~rl~~~f~~-~~v~~~~p~~~----~~~~fnIlv~Hq~~~~~~~~~~ipe~llp~~fDY 231 (405)
T TIGR00583 157 PILLQKGETKLALYGISNVRDERLVRTFKD-NKVSFLRPNAG----AEDWFNLLVLHQNHAAHTSTSFLPESFIPDFFDL 231 (405)
T ss_pred eEEEecCCeeEEEecCCCCCHHHHHHHhhc-cchhhhccccC----CCCceEEEEeCceecCCCCcccCchhhhhccCcE
Confidence 999999999999999999999999999987 47888887632 3589999999999988877788999999999999
Q ss_pred EEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEeccCCCC
Q 006878 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDEADI 328 (627)
Q Consensus 249 Va~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L~~~~~~ 328 (627)
|||||+|+|++.|+..+..+++|+||||+++|||+++|..+|||++|+|+++.+++++|||+++|||++.+++|++..++
T Consensus 232 ValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~~~~~~~IpL~~vRpf~~~~i~l~~~~~~ 311 (405)
T TIGR00583 232 VIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGRKFASKPIPLQTVRPFVMKEILLDKVPGS 311 (405)
T ss_pred EEecccccccccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCCeeEEEEeeCCCcccEEEEEEEhhhcccc
Confidence 99999999999887776667899999999999999999999999999999989999999999999999999999987554
Q ss_pred CC----CCHhHHHHHHHHHHHHHHHHhhhcccc---------cccCCCCeEEEEEeecc----ccccChhhhhhhhhhcc
Q 006878 329 DP----DDQNSILEHLDKVVRNLIERSSKKTVN---------RSELKLPLVRIKVDYSG----FMTINPQRFGQKYVGKV 391 (627)
Q Consensus 329 ~~----~~~~~i~~~l~~~v~~~i~~a~~~~~~---------~~~~~~PLiRLrV~~sg----~~~~n~~rfg~~f~~~v 391 (627)
.+ ++.+++.++|.+.|++||++|++++.. ..++++|||||||+||| |+++||+||||+|+|||
T Consensus 312 ~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~~~~n~~rf~~~~~~~v 391 (405)
T TIGR00583 312 RPILKTDNKKETDKRLIDEVEEMINEANAEWKAKRADGEGDEPREPPLPLIRLKVDYTGPWLNYQVENPKRFSNRFVGRV 391 (405)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCceEEEEEEecCCCCCccccChhHHhhhhcccc
Confidence 43 557899999999999999999876532 35789999999999996 89999999999999999
Q ss_pred cCccceEEEEecc
Q 006878 392 ANPQDILIFSKSS 404 (627)
Q Consensus 392 aNp~dil~f~~~~ 404 (627)
|||+|||+|||++
T Consensus 392 an~~d~~~~~~~~ 404 (405)
T TIGR00583 392 ANANDVVQFYKNN 404 (405)
T ss_pred cChhHeEEEEecC
Confidence 9999999999875
No 3
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-34 Score=313.37 Aligned_cols=260 Identities=32% Similarity=0.482 Sum_probs=187.8
Q ss_pred eEEEEEcCCCCC-CCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 13 VRILVATDCHLG-YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 13 mKILh~SD~HLG-~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
|||||+|||||| +..+.+.|.+|.+.+|+++++.|++++|||||+||||||+++|+.+++..+++.|+++|
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~-------- 72 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLK-------- 72 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhc--------
Confidence 899999999999 56677899999999999999999999999999999999999999999999999999985
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccc--eeecCCCccceeEEE
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGK--MVLGGSGVGEITVYP 169 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~--~~l~~~~~~~i~~~P 169 (627)
..+||||+|+||||.+.+....+++.++...+++.+.+. ... .. ..+...|
T Consensus 73 ------------------------~~~Ipv~~I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~ 125 (390)
T COG0420 73 ------------------------DAGIPVVVIAGNHDSPSRLSEASPLLLLNNLGLHGVVGRLVHEI-RP--PEIVAAP 125 (390)
T ss_pred ------------------------cCCCcEEEecCCCCchhccccccchHHHHcCCceeecccceecc-cc--cchhcce
Confidence 468999999999999998877776666777777666553 110 00 1111456
Q ss_pred EEEeeCCeeEE-EEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCC--CC--Ccccc-c--ccc
Q 006878 170 ILIRKGSTAVA-LYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVK--TN--PKNAI-N--EHF 241 (627)
Q Consensus 170 ill~kg~~~va-lyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~--~~--~~~~i-~--e~~ 241 (627)
.++......+. ++|..+............ .....+.| ...++|+++|+.... .. +...+ + -+.
T Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~ 196 (390)
T COG0420 126 WLIPGPDPDVVFFLGLNGLEKEQFELLLHK-GLLSALDP--------DDDPSILVLHQSIDALTSGAERDLALGTVDLSL 196 (390)
T ss_pred eeeccCCCcceeeeccCCchHHHHHHHHhH-hHHhhcCC--------ccCceeeehhhhhcccccCCccceEEccccccc
Confidence 66665455555 888888766554332200 00111111 156899999997441 11 11111 1 356
Q ss_pred CCcC-CCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCc-eEEEEEECCCCCcEEEEE
Q 006878 242 LPRF-LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-YRPTKIPLTSVRPFEYTE 319 (627)
Q Consensus 242 lp~~-~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~-~~~e~IpL~tvRpf~~~~ 319 (627)
+|.. |||||+||+|.++. +......|.||||+++++|.| +...|++.+|+++++. +.++.+++. ++...+
T Consensus 197 ~~~~~~~YvALGHiH~~~~----~~~~~~~i~y~GS~~~~~f~E-~~~~k~~~~v~~~~~~~~~~~~~~~~---~~~~~~ 268 (390)
T COG0420 197 LPKGGFDYVALGHIHKRQV----IPKEDPPIVYPGSPERYSFGE-EGERKGVVLVEFSGGKLWRFEELFVP---LFERLE 268 (390)
T ss_pred ccCCCcceEEcCCcccccc----cCCCCCceecCCCceecchhH-cCCcccEEEEEecCCceeeecccccc---ccCceE
Confidence 7776 99999999999854 333334678999999999987 4788999999999884 455555544 444444
Q ss_pred EEecc
Q 006878 320 IILKD 324 (627)
Q Consensus 320 i~L~~ 324 (627)
+....
T Consensus 269 ~~~~~ 273 (390)
T COG0420 269 VDVLN 273 (390)
T ss_pred EEEee
Confidence 44443
No 4
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=100.00 E-value=7.4e-33 Score=301.68 Aligned_cols=316 Identities=20% Similarity=0.280 Sum_probs=207.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
|||||+||||||....+..+..+....++++++.+.+++||+||++|||||...|+......+.+++.++.
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~--------- 71 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQ--------- 71 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHH---------
Confidence 89999999999987666556666667789999999999999999999999999887654433334444431
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEEE
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILI 172 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pill 172 (627)
..++|||+|+||||.+.... .+.++|...| |.+++... ......|+.+
T Consensus 72 -----------------------~~~~~v~~I~GNHD~~~~l~--~~~~~l~~~g-i~vl~~~~------~~~~~~~v~l 119 (407)
T PRK10966 72 -----------------------QTGCQLVVLAGNHDSVATLN--ESRDLLAFLN-TTVIASAS------DDLGHQVIIL 119 (407)
T ss_pred -----------------------hcCCcEEEEcCCCCChhhhh--hHHHHHHHCC-cEEEeccc------ccCCcceEEE
Confidence 34689999999999876543 2346777666 44554421 1223356666
Q ss_pred ee--CCeeEEEEecCCCCHHHHHhhhcCh----------hHHhh-cCh---hhhhh--hcCCCceEEEEEccCCCCCCC-
Q 006878 173 RK--GSTAVALYGLGNIRDERLNRMFQTP----------HAVQW-MRP---EAQEE--CQVSDWFNILVLHQNRVKTNP- 233 (627)
Q Consensus 173 ~k--g~~~valyGl~~i~derl~~~f~~~----------~~v~~-l~p---~~~~~--~~~~~~fnILv~Hq~~~~~~~- 233 (627)
.. |...+.+|++||.+...+...+... ..+.. +.. ..... .-.++..||+++|+.+.+...
T Consensus 120 ~~~~g~~~~~i~~lPy~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~I~~aH~~v~g~~~~ 199 (407)
T PRK10966 120 PRRDGTPGAVLCAIPFLRPRDVITSQAGQSGIEKQQALQAAIADHYQQLYQLACELRDELGQPLPIIATGHLTTVGASKS 199 (407)
T ss_pred ecCCCCeeeEEEECCCCCHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeEEEcCCccc
Confidence 54 3345679999999877665544110 00100 100 00000 001356799999988766421
Q ss_pred ----------ccccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCc-e
Q 006878 234 ----------KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-Y 302 (627)
Q Consensus 234 ----------~~~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~-~ 302 (627)
...++.+.++. +||||+||+|++ |.+.+ ...++|||||+++||+|. ..+|+|++|+++.++ +
T Consensus 200 ~sEr~~~vGg~~~v~~~~f~~-~dYvALGHlH~~----Q~v~~-~~~vrYsGSpl~~sFsE~-~~~K~v~lVel~~~~~~ 272 (407)
T PRK10966 200 DSVRDIYIGTLDAFPAQAFPP-ADYIALGHIHRA----QKVGG-TEHIRYSGSPIPLSFDEL-GKSKSVHLVEFDQGKLQ 272 (407)
T ss_pred CCeeEeeecCCceecHHHCCc-cCeeeccccccC----cCCCC-CCcEEEcCCCCCCCcccc-CCCCeEEEEEEcCCccc
Confidence 13455667776 799999999997 55533 357999999999999973 567999999998664 7
Q ss_pred EEEEEECCCCCcEEEEEEEeccCCCCCCCCHhHHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEEEeeccccccChhh
Q 006878 303 RPTKIPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPLVRIKVDYSGFMTINPQR 382 (627)
Q Consensus 303 ~~e~IpL~tvRpf~~~~i~L~~~~~~~~~~~~~i~~~l~~~v~~~i~~a~~~~~~~~~~~~PLiRLrV~~sg~~~~n~~r 382 (627)
.+++|||+..||+...+ . +.+++.+ .+..+-. . .....++|+++|....... ++
T Consensus 273 ~v~~i~l~~~~~l~~~~----g-------~~~el~~----~~~~l~~---~-----~~~~~~y~~v~l~d~~~~~-~~-- 326 (407)
T PRK10966 273 SVTPLPVPVFQPMAVLK----G-------DLASITA----QLEQWRD---V-----SQEPPVWLDIEVTTDDYLH-DI-- 326 (407)
T ss_pred eEEEEECCCCceeEEec----C-------CHHHHHH----HHHHhhh---c-----cCCCCcEEEEEEeCCCCCh-hH--
Confidence 99999999999976433 1 1122222 1111100 0 1124689999988665432 32
Q ss_pred hhhhhhhcccC-ccceEEEEec
Q 006878 383 FGQKYVGKVAN-PQDILIFSKS 403 (627)
Q Consensus 383 fg~~f~~~vaN-p~dil~f~~~ 403 (627)
-.+......| |+.|+.+.+.
T Consensus 327 -~~~l~~~~~~~p~~il~i~~~ 347 (407)
T PRK10966 327 -QRRIQALTESLPVEVLLVRRS 347 (407)
T ss_pred -HHHHHHHcCCCCeEEEEEEec
Confidence 2455556666 7778888744
No 5
>PF04152 Mre11_DNA_bind: Mre11 DNA-binding presumed domain ; InterPro: IPR007281 The Mre11 complex is a multi-subunit nuclease that is composed of Mre11, Rad50 and Nbs1/Xrs2, and is involved in checkpoint signalling and DNA replication []. Mre11 has an intrinsic DNA-binding activity that is stimulated by Rad50 on its own or in combination with Nbs1 [].; GO: 0004519 endonuclease activity, 0030145 manganese ion binding, 0006302 double-strand break repair, 0005634 nucleus; PDB: 4FBW_B 4FBK_A 4FCX_B 4FBQ_B 3T1I_B.
Probab=100.00 E-value=9.5e-34 Score=275.65 Aligned_cols=154 Identities=44% Similarity=0.777 Sum_probs=80.0
Q ss_pred eEEEEEECCCCCcEEEEEEEeccCC-CCCCCCHhHHHHHHHHHHHHHHHHhhhcc-----------cccccCCCCeEEEE
Q 006878 302 YRPTKIPLTSVRPFEYTEIILKDEA-DIDPDDQNSILEHLDKVVRNLIERSSKKT-----------VNRSELKLPLVRIK 369 (627)
Q Consensus 302 ~~~e~IpL~tvRpf~~~~i~L~~~~-~~~~~~~~~i~~~l~~~v~~~i~~a~~~~-----------~~~~~~~~PLiRLr 369 (627)
|++++|||+|||||++.+|+|++.. ..++.+.++|.++|.+.|++||++|+.++ ....++++||||||
T Consensus 1 f~~~pIpLkTVRPFv~~~i~L~~~~~~~~~~~~~~v~~~l~~~Ve~mI~~A~~~~~~~~~~~~~~~~~~~~~~lPLIRLR 80 (175)
T PF04152_consen 1 FRLEPIPLKTVRPFVFDDIVLSDEPLPLDPDNKEDVEKFLREKVEEMIEEAKEEWEELQREPDDQTGHPKQPPLPLIRLR 80 (175)
T ss_dssp EEEEEEE-SSS--EEEEEEEGGG-TSSSSTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHHT--STTTSSS-SS-EEEEE
T ss_pred CCcccccCCCCCCEEEEEEEeCCcCCCCCcchHHHHHHHHHHHHHHHHHHhHhhhccccccccccccCcccCCCCEEEEE
Confidence 6899999999999999999999986 45677789999999999999999999877 23568999999999
Q ss_pred Eeecc-ccccChhhhhhhhhhcccCccceEEEEeccccccc------ccccccccccCcccchhhhHHHHHHhh--cccc
Q 006878 370 VDYSG-FMTINPQRFGQKYVGKVANPQDILIFSKSSKKSKA------EAKIDDFERLRPEELNQQNIEALVAEN--NLKM 440 (627)
Q Consensus 370 V~~sg-~~~~n~~rfg~~f~~~vaNp~dil~f~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~l 440 (627)
|+||| |+++||+||||+|+|+||||+|||+|||+++++.. ....++.+...++.+++.+|+++|.++ ..+|
T Consensus 81 Vdys~~~~~~N~~RFgq~FvgrVANP~Dil~f~rkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~lV~~~l~~~~L 160 (175)
T PF04152_consen 81 VDYSGGFEVFNPQRFGQRFVGRVANPNDILQFYRKKKKKKKKKKKKDEDDPDEEEPLAPEELDQVRVEDLVKEYLSAQKL 160 (175)
T ss_dssp EE-TTT-----CHHHHHCCTTTBS-SSSSEEEE-----------------------------------------------
T ss_pred EEecCCCcccCHHHHHHHhccccCChHHeEEEEecccccccccccccccccchhhhccccccccccHHHHHHHHHhhCCc
Confidence 99999 99999999999999999999999999987654432 112223344566778899999999995 6789
Q ss_pred cccCCCcHHHHHHHH
Q 006878 441 EIIPVNDLDVALHNF 455 (627)
Q Consensus 441 ~~l~~~~l~~a~~~f 455 (627)
+||++++|++||++|
T Consensus 161 ~lL~e~~l~eAv~~F 175 (175)
T PF04152_consen 161 SLLPENGLNEAVEEF 175 (175)
T ss_dssp ---------------
T ss_pred cccCHHHHHHHHHhC
Confidence 999999999999988
No 6
>PHA02546 47 endonuclease subunit; Provisional
Probab=99.98 E-value=3.9e-30 Score=274.61 Aligned_cols=232 Identities=16% Similarity=0.177 Sum_probs=163.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-CChHHHHHHHH-HHHHhhcCCCccc
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK-PSRSTLVKAIE-ILRRHCLNDRPVQ 90 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~-Ps~~tl~~~~~-lLr~l~~g~~p~~ 90 (627)
|||||+||||||....++.+.++...+|++++++|++++||+||++||+||..+ |+..++..+.+ +++++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L-------- 72 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLL-------- 72 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHH--------
Confidence 899999999999876666677778889999999999999999999999999974 45454444433 34333
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCC--CcchHHHHhhhCCceeeccceeecCCCccceeEE
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGV--DNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~--~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~ 168 (627)
.+.++|||+|+||||..... ..-++..+|...+.+.+++.. .
T Consensus 73 ------------------------~~~gi~v~~I~GNHD~~~~~~~~~~~~~~ll~~~~~v~v~~~~------------~ 116 (340)
T PHA02546 73 ------------------------KEAGITLHVLVGNHDMYYKNTIRPNAPTELLGQYDNITVIDEP------------T 116 (340)
T ss_pred ------------------------HHCCCeEEEEccCCCcccccccccCchHHHHhhCCCEEEeCCc------------e
Confidence 14579999999999975321 112345677776667666542 1
Q ss_pred EEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCC----C--CccccccccC
Q 006878 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT----N--PKNAINEHFL 242 (627)
Q Consensus 169 Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~----~--~~~~i~e~~l 242 (627)
++.+ + .+.++++||...+.+..++ +++. .+..||++.|+.+.+. + ....++...+
T Consensus 117 ~v~i--~--g~~i~~lP~~~~~~~~~~~------~~l~---------~~~~~ill~H~~v~g~~~~~g~~~~~~~~~~~~ 177 (340)
T PHA02546 117 TVDF--D--GCSIDLIPWICKENTEEIL------EFIK---------NSKSEYCVGHWELNGFYFYKGMKSDHGLDPDFL 177 (340)
T ss_pred EEEE--C--CEEEEECCCCCHHHHHHHH------HHhc---------cCCCcEEEEeeEEecCcccCCCccccCCChhHh
Confidence 2222 2 2567889998776554322 2232 2356999999865442 1 1123444555
Q ss_pred CcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEE
Q 006878 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEI 320 (627)
Q Consensus 243 p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i 320 (627)
..|||||+||+|.++ .. ..++|||||++++|+| +..+|||++|++..+ +++++|+. .|||.....
T Consensus 178 -~~fdyvALGHiH~~~----~~----~~i~Y~GSp~~~sf~E-~~~~KG~~~vd~~~~--~~efip~~-~~~~~~i~~ 242 (340)
T PHA02546 178 -KKYKQVWSGHFHTIS----EK----GNVTYIGTPYTLTAGD-ENDPRGFWVFDTETH--KLEFIANP-TTWHRRITY 242 (340)
T ss_pred -ccCCEEeecccccCc----cc----CCEEEeCCceeeCccc-cCCCCeEEEEECCCC--ceEEEeCC-CceEEEEEe
Confidence 459999999999963 22 3699999999999986 456899999998765 47899997 588875443
No 7
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=4.7e-28 Score=248.71 Aligned_cols=227 Identities=21% Similarity=0.233 Sum_probs=148.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
|||+|+||||||.......|..+.+.+|+++++.+++++||+||++||+||...|+..+...+.++|.++.
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~--------- 71 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLS--------- 71 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHH---------
Confidence 89999999999987766667788889999999999999999999999999999998876655666666652
Q ss_pred eechhhhhcccccCccccCCCCCCCC-CcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEE
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVG-LPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~-iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pil 171 (627)
..+ +|||+|+||||.+...... ..++.. ..|++++... ....|+.
T Consensus 72 -----------------------~~~~i~v~~i~GNHD~~~~~~~~--~~l~~~-~~v~i~~~~~--------~~~~~~~ 117 (253)
T TIGR00619 72 -----------------------DANPIPIVVISGNHDSAQRLSAA--KKLLIE-LGVFVVGFPV--------GDPQILL 117 (253)
T ss_pred -----------------------hcCCceEEEEccCCCChhhcccc--hhHHHh-CCeEEEEecc--------cCceEEE
Confidence 234 9999999999998654322 234544 3456665532 1123555
Q ss_pred Eee--CCeeEEEEecCCCCHHHHHhhhcChh-----------HHhh-cChhhhhhhcCCCceEEEEEccCCCCCCC----
Q 006878 172 IRK--GSTAVALYGLGNIRDERLNRMFQTPH-----------AVQW-MRPEAQEECQVSDWFNILVLHQNRVKTNP---- 233 (627)
Q Consensus 172 l~k--g~~~valyGl~~i~derl~~~f~~~~-----------~v~~-l~p~~~~~~~~~~~fnILv~Hq~~~~~~~---- 233 (627)
+.. ++..+++...++..+.++.+.+.+.. .+.. +.... .. ..++.+||+++|+.+.+...
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~Il~~H~~v~g~~~~~se 195 (253)
T TIGR00619 118 LKDTANGELLIVGLPLLPREALLTRAGLDGFGLELLLLHLDVKLRQALEGLI-RR-LDPDLPKILLAHLFTAGATKSATE 195 (253)
T ss_pred eccCCCCceEEEEeccCCHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCCEEEEEcceeccCCCcCce
Confidence 543 22333333334433333322221100 0110 11000 00 12456899999999876421
Q ss_pred -------ccccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCe
Q 006878 234 -------KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKH 291 (627)
Q Consensus 234 -------~~~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kg 291 (627)
...++...+|. +||||+||+|.++ ...+ ...++|||||+++||+| +...|+
T Consensus 196 ~~~~~g~~~~v~~~~~~~-~dYvALGHiH~~q----~~~~-~~~i~YsGSp~~~sf~E-~~~~K~ 253 (253)
T TIGR00619 196 RRIYIGFTYAVPLINFPE-ADYVALGHHHIHK----ISKG-RERVRYSGSPFPLSFDE-AGEDKG 253 (253)
T ss_pred EEeeECCccccCHHHCCc-cchhhcccccccc----ccCC-CCCEEECCCCccCCcCc-ccCCCC
Confidence 23345566676 6999999999964 3333 46899999999999997 344553
No 8
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.94 E-value=4.1e-26 Score=226.39 Aligned_cols=215 Identities=42% Similarity=0.624 Sum_probs=150.1
Q ss_pred EEEEEcCCCCCCCCCch---hchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccc
Q 006878 14 RILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~---~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~ 90 (627)
||+|+||+|||...... .|..+.+.+|+++++.|.+.+||+||++||+||...++...+..+.+.|+++.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~------- 73 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLK------- 73 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHH-------
Confidence 79999999999866433 35788999999999999999999999999999999888877777888877752
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEE
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi 170 (627)
..++|||+++||||.+........ .+.. ..+.+++. ......+.
T Consensus 74 -------------------------~~~~~v~~~~GNHD~~~~~~~~~~--~~~~-~~~~~~~~--------~~~~~~~~ 117 (223)
T cd00840 74 -------------------------EAGIPVFIIAGNHDSPSRLGALSP--LLAL-SGLHLVGV--------EEDVLTPL 117 (223)
T ss_pred -------------------------HCCCCEEEecCCCCCccccccccc--hHhh-CcEEEEcc--------cCcceeEE
Confidence 247999999999999876543221 1111 12222210 01122344
Q ss_pred EEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccc-----cccccCCcC
Q 006878 171 LIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNA-----INEHFLPRF 245 (627)
Q Consensus 171 ll~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~-----i~e~~lp~~ 245 (627)
.+..+...+.|+|+++.........+.. ....... ...+.++|+++|+++.+..+... ....+.+.+
T Consensus 118 ~~~~~~~~v~i~g~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T cd00840 118 LLPKGGTGVAIYGLPYLRRSRLRDLLAD--AELRPRP------LDPDDFNILLLHGGVAGAGPSDSERAPFVPEALLPAG 189 (223)
T ss_pred EeccCCeEEEEEECCCCCHHHHHHHHHH--HHHHhhc------cCCCCcEEEEEeeeeecCCCCcccccccCcHhhcCcC
Confidence 4556678999999999876654332210 0001111 12467999999999876543321 223455678
Q ss_pred CCEEEcCCccccccCCeecCCCCceEecCCCccccccc
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLI 283 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~ 283 (627)
+|||++||+|.+++. ...+..++||||+++++|+
T Consensus 190 ~d~v~~GH~H~~~~~----~~~~~~~~ypGS~~~~~f~ 223 (223)
T cd00840 190 FDYVALGHIHRPQII----LGGGPPIVYPGSPEGLSFS 223 (223)
T ss_pred CCEEECCCcccCeee----cCCCceEEeCCCccccCCC
Confidence 999999999998653 2235799999999999984
No 9
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.77 E-value=1e-17 Score=166.97 Aligned_cols=169 Identities=24% Similarity=0.307 Sum_probs=112.9
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
.|||+|+||+|++.... ...|+++++.+.+++||+||++||+|+...+.. ..+.++|+++
T Consensus 1 ~~~i~~~sDlH~~~~~~--------~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~---~~~~~~l~~l--------- 60 (223)
T cd07385 1 GLRIAHLSDLHLGPFVS--------RERLERLVEKINALKPDLVVLTGDLVDGSVDVL---ELLLELLKKL--------- 60 (223)
T ss_pred CCEEEEEeecCCCccCC--------HHHHHHHHHHHhccCCCEEEEcCcccCCcchhh---HHHHHHHhcc---------
Confidence 48999999999997543 246889999999999999999999999876543 2345555543
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEE
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pil 171 (627)
...+|||+++||||...+... .....+...|...+.+ +.+.
T Consensus 61 ------------------------~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~~L~~--------------~~~~ 101 (223)
T cd07385 61 ------------------------KAPLGVYAVLGNHDYYSGDEE-NWIEALESAGITVLRN--------------ESVE 101 (223)
T ss_pred ------------------------CCCCCEEEECCCcccccCchH-HHHHHHHHcCCEEeec--------------CcEE
Confidence 346899999999998765332 1145666655422211 2244
Q ss_pred EeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcCCCEEEc
Q 006878 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVW 251 (627)
Q Consensus 172 l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~~DyVa~ 251 (627)
+..++.++.++|+++..... .. ....+. . ..++.++|++.|++... +.+...++||+++
T Consensus 102 ~~~~~~~i~i~G~~~~~~~~-----~~--~~~~~~-~-----~~~~~~~I~l~H~P~~~--------~~~~~~~~dl~l~ 160 (223)
T cd07385 102 ISVGGATIGIAGVDDGLGRR-----PD--LEKALK-G-----LDEDDPNILLAHQPDTA--------EEAAAWGVDLQLS 160 (223)
T ss_pred eccCCeEEEEEeccCccccC-----CC--HHHHHh-C-----CCCCCCEEEEecCCChh--------HHhcccCccEEEe
Confidence 56778899999976542210 00 001111 1 12467999999985321 1223467999999
Q ss_pred CCccccccC
Q 006878 252 GHEHECLID 260 (627)
Q Consensus 252 GH~H~~~i~ 260 (627)
||+|..++.
T Consensus 161 GHtHggqi~ 169 (223)
T cd07385 161 GHTHGGQIR 169 (223)
T ss_pred ccCCCCEEe
Confidence 999999864
No 10
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.71 E-value=2.6e-16 Score=163.35 Aligned_cols=172 Identities=19% Similarity=0.306 Sum_probs=111.0
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 006878 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (627)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~ 87 (627)
+..+.|||+|+||+|++.... ...++++++.+++++||+|+++||+++...+. ....+.+.|+++
T Consensus 45 ~~~~~~rI~~lSDlH~~~~~~--------~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~--~~~~~~~~L~~L----- 109 (271)
T PRK11340 45 DNAAPFKILFLADLHYSRFVP--------LSLISDAIALGIEQKPDLILLGGDYVLFDMPL--NFSAFSDVLSPL----- 109 (271)
T ss_pred CCCCCcEEEEEcccCCCCcCC--------HHHHHHHHHHHHhcCCCEEEEccCcCCCCccc--cHHHHHHHHHHH-----
Confidence 345679999999999985321 34578899999999999999999999843222 123455666665
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcch-HHHHhhhCCceeeccceeecCCCcccee
Q 006878 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLS-AVDILSACNLVNYFGKMVLGGSGVGEIT 166 (627)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls-~ldiL~~~glVn~fg~~~l~~~~~~~i~ 166 (627)
....|||++.||||...+..... ..+.|+..|. .++..
T Consensus 110 ----------------------------~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi-~lL~n------------ 148 (271)
T PRK11340 110 ----------------------------AECAPTFACFGNHDRPVGTEKNHLIGETLKSAGI-TVLFN------------ 148 (271)
T ss_pred ----------------------------hhcCCEEEecCCCCcccCccchHHHHHHHHhcCc-EEeeC------------
Confidence 22479999999999865432211 2345666553 22211
Q ss_pred EEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcCC
Q 006878 167 VYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246 (627)
Q Consensus 167 ~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~~ 246 (627)
+.+.+..++..+.|+|++.....+ . . ..+.+ .++.|+|++.|++.. + +.+-...+
T Consensus 149 -~~~~i~~~~~~i~i~G~~d~~~~~----~-~--~~~~~---------~~~~~~IlL~H~P~~-------~-~~~~~~~~ 203 (271)
T PRK11340 149 -QATVIATPNRQFELVGTGDLWAGQ----C-K--PPPAS---------EANLPRLVLAHNPDS-------K-EVMRDEPW 203 (271)
T ss_pred -CeEEEeeCCcEEEEEEecchhccC----C-C--hhHhc---------CCCCCeEEEEcCCCh-------h-HhhccCCC
Confidence 233445567789999997542111 0 0 00111 136699999999742 1 12233569
Q ss_pred CEEEcCCccccccC
Q 006878 247 DFVVWGHEHECLID 260 (627)
Q Consensus 247 DyVa~GH~H~~~i~ 260 (627)
|++++||+|.+|+.
T Consensus 204 dL~lsGHTHGGQi~ 217 (271)
T PRK11340 204 DLMLCGHTHGGQLR 217 (271)
T ss_pred CEEEeccccCCeEE
Confidence 99999999999874
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.60 E-value=2.7e-14 Score=148.24 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=64.9
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 006878 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
..+.|||+|+||+||.........+.+....|+.+++.++++ +||+||++|||.+... .+.+..+.+.|.+
T Consensus 11 ~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~----- 83 (275)
T PRK11148 11 GEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAP----- 83 (275)
T ss_pred CCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhh-----
Confidence 347799999999999654333334567788999999988765 6999999999999653 4444455555543
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
..+|+|+|+||||..
T Consensus 84 ------------------------------l~~Pv~~v~GNHD~~ 98 (275)
T PRK11148 84 ------------------------------LRKPCVWLPGNHDFQ 98 (275)
T ss_pred ------------------------------cCCcEEEeCCCCCCh
Confidence 358999999999974
No 12
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.56 E-value=3.7e-15 Score=139.56 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=49.5
Q ss_pred ceEEEEEccCCCCCCC-ccccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEE
Q 006878 218 WFNILVLHQNRVKTNP-KNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLE 296 (627)
Q Consensus 218 ~fnILv~Hq~~~~~~~-~~~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lve 296 (627)
..+|+++|........ ...+...+....+++++.||+|..... +. .+..+++|||....... .++++++++
T Consensus 81 ~~~i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~--~~--~~~~~~~~Gs~~~~~~~----~~~~~~i~~ 152 (156)
T PF12850_consen 81 GFKILLSHGHPYDVQWDPAELREILSRENVDLVLHGHTHRPQVF--KI--GGIHVINPGSIGGPRHG----DQSGYAILD 152 (156)
T ss_dssp TEEEEEESSTSSSSTTTHHHHHHHHHHTTSSEEEESSSSSEEEE--EE--TTEEEEEE-GSSS-SSS----SSEEEEEEE
T ss_pred CCeEEEECCCCcccccChhhhhhhhcccCCCEEEcCCcccceEE--EE--CCEEEEECCcCCCCCCC----CCCEEEEEE
Confidence 4688888886543211 112223344567999999999998653 22 24789999998776653 288999999
Q ss_pred EeCC
Q 006878 297 IKEN 300 (627)
Q Consensus 297 I~~~ 300 (627)
++.+
T Consensus 153 ~~~~ 156 (156)
T PF12850_consen 153 IEDK 156 (156)
T ss_dssp ETTT
T ss_pred EecC
Confidence 8753
No 13
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.54 E-value=2.8e-14 Score=143.92 Aligned_cols=197 Identities=19% Similarity=0.275 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
||+|+||+|+|.......+..+...+|+.+++.+++. +||+||++|||++...+ .....+.++|++
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~---------- 68 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAA---------- 68 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhh----------
Confidence 7999999999964322233456678899999999988 99999999999998643 333444444443
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEEE
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPIL 171 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pil 171 (627)
.++|+++|+||||..... ...+..... ..+. .. ..
T Consensus 69 -------------------------~~~p~~~v~GNHD~~~~~-----~~~~~~~~~--~~~~--------~~-----~~ 103 (240)
T cd07402 69 -------------------------LPIPVYLLPGNHDDRAAM-----RAVFPELPP--APGF--------VQ-----YV 103 (240)
T ss_pred -------------------------cCCCEEEeCCCCCCHHHH-----HHhhccccc--cccc--------cc-----ee
Confidence 368999999999974211 011211100 0000 00 01
Q ss_pred EeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCC---cc-cc--c---cccC
Q 006878 172 IRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP---KN-AI--N---EHFL 242 (627)
Q Consensus 172 l~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~---~~-~i--~---e~~l 242 (627)
+..+ .+.++++...........+. ...++|++..... ..+...|+++|++...... .. .. . ..++
T Consensus 104 ~~~~--~~~~i~lds~~~~~~~~~~~-~~ql~wL~~~L~~---~~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l 177 (240)
T cd07402 104 VDLG--GWRLILLDSSVPGQHGGELC-AAQLDWLEAALAE---APDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVL 177 (240)
T ss_pred EecC--CEEEEEEeCCCCCCcCCEEC-HHHHHHHHHHHHh---CCCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHH
Confidence 2222 34555554432110000011 1234555443221 1256789999998654221 00 00 0 1223
Q ss_pred C-c-CCCEEEcCCccccccCCeecCCCCceEecCCCc
Q 006878 243 P-R-FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (627)
Q Consensus 243 p-~-~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~ 277 (627)
. . .++++++||.|..... ... +..+++.||.
T Consensus 178 ~~~~~v~~v~~GH~H~~~~~--~~~--g~~~~~~gs~ 210 (240)
T cd07402 178 ARHPNVRAILCGHVHRPIDG--SWG--GIPLLTAPST 210 (240)
T ss_pred hcCCCeeEEEECCcCchHHe--EEC--CEEEEEcCcc
Confidence 3 2 6899999999997542 333 3566666664
No 14
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.54 E-value=5e-14 Score=131.40 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=58.5
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeee
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~l 94 (627)
|+|+||+|+|.......... ...|+++++.+.+.++|+|+++|||++...+ ..+..+.++|+++.
T Consensus 1 il~isD~Hl~~~~~~~~~~~--~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~~~~l~----------- 65 (144)
T cd07400 1 ILHLSDLHFGPERKPELLAL--LSLLDRLLAEIKALDPDLVVITGDLTQRGLP--EEFEEAREFLDALP----------- 65 (144)
T ss_pred CeEeCccCCCCCcchhHHHH--HHHHHHHHHHHhccCCCEEEECCCCCCCCCH--HHHHHHHHHHHHcc-----------
Confidence 79999999997544322111 1227788999999999999999999997643 44555666666642
Q ss_pred chhhhhcccccCccccCCCCCCCCCcEEEEcCCCCC
Q 006878 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (627)
Q Consensus 95 sd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~ 130 (627)
...+|+++|+||||.
T Consensus 66 ---------------------~~~~~~~~v~GNHD~ 80 (144)
T cd07400 66 ---------------------APLEPVLVVPGNHDV 80 (144)
T ss_pred ---------------------ccCCcEEEeCCCCeE
Confidence 112799999999997
No 15
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.52 E-value=8.7e-13 Score=135.55 Aligned_cols=226 Identities=15% Similarity=0.201 Sum_probs=125.4
Q ss_pred CceEEEEEcCCCCCCCCCc----hhchhcHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCChH---HHHHHHHHHHH
Q 006878 11 NTVRILVATDCHLGYMEKD----EIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRS---TLVKAIEILRR 81 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d----~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~---tl~~~~~lLr~ 81 (627)
+.++|+|+||.|+|..... ..+..+....++.+++.+.+. ++|+||++|||++....... ....+.+++++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL 82 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh
Confidence 5689999999999974332 122344456789999999888 99999999999998654321 11222222222
Q ss_pred hhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCC
Q 006878 82 HCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSG 161 (627)
Q Consensus 82 l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~ 161 (627)
...++|+++|+||||...... ...+..+. ..||...
T Consensus 83 ---------------------------------~~~~vp~~~i~GNHD~~~~~~-~~~~~~f~-----~~~g~~~----- 118 (262)
T cd07395 83 ---------------------------------LDPDIPLVCVCGNHDVGNTPT-EESIKDYR-----DVFGDDY----- 118 (262)
T ss_pred ---------------------------------ccCCCcEEEeCCCCCCCCCCC-hhHHHHHH-----HHhCCcc-----
Confidence 134799999999999742211 11122121 1222210
Q ss_pred ccceeEEEEEEeeCCeeEEEEec-----------CCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCC
Q 006878 162 VGEITVYPILIRKGSTAVALYGL-----------GNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVK 230 (627)
Q Consensus 162 ~~~i~~~Pill~kg~~~valyGl-----------~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~ 230 (627)
. .+..++ +.+++| +++..+ .+.|++..............|+++|.+...
T Consensus 119 ---y-----~~~~~~--~~~i~lds~~~~~~~~~~~~~~~----------ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~ 178 (262)
T cd07395 119 ---F-----SFWVGG--VFFIVLNSQLFFDPSEVPELAQA----------QDVWLEEQLEIAKESDCKHVIVFQHIPWFL 178 (262)
T ss_pred ---e-----EEEECC--EEEEEeccccccCccccccchHH----------HHHHHHHHHHHHHhccCCcEEEEECcCCcc
Confidence 0 001111 111111 122222 345554332211001345789999998753
Q ss_pred CCC---ccc--cc-------cccC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEE
Q 006878 231 TNP---KNA--IN-------EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEI 297 (627)
Q Consensus 231 ~~~---~~~--i~-------e~~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI 297 (627)
..+ ..+ ++ ..++ ..+++++++||.|..... ... +...+.+|++ ...+. ..+.|+.+++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~--~~~--g~~~~~~~~~-~~~~~---~~~~g~~~~~v 250 (262)
T cd07395 179 EDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGG--RYG--GLEMVVTSAI-GAQLG---NDKSGLRIVKV 250 (262)
T ss_pred CCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCce--EEC--CEEEEEcCce-ecccC---CCCCCcEEEEE
Confidence 221 111 11 1122 357999999999987542 232 3444444444 23443 35789999999
Q ss_pred eCCceEEEEEE
Q 006878 298 KENQYRPTKIP 308 (627)
Q Consensus 298 ~~~~~~~e~Ip 308 (627)
++++++.|...
T Consensus 251 ~~~~~~~~~~~ 261 (262)
T cd07395 251 TEDKIVHEYYS 261 (262)
T ss_pred CCCceeeeeee
Confidence 98888777654
No 16
>PRK09453 phosphodiesterase; Provisional
Probab=99.50 E-value=4.3e-13 Score=130.95 Aligned_cols=172 Identities=22% Similarity=0.310 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC----CChHHHHHHHHHHHHhhcCCCc
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENK----PSRSTLVKAIEILRRHCLNDRP 88 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~----Ps~~tl~~~~~lLr~l~~g~~p 88 (627)
|||+++||+|.. +.+++++++.+.+.++|.|+++||+|+... +.......+++.|++
T Consensus 1 mri~viSD~Hg~------------~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~------- 61 (182)
T PRK09453 1 MKLMFASDTHGS------------LPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNA------- 61 (182)
T ss_pred CeEEEEEeccCC------------HHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHh-------
Confidence 899999999954 346889999999999999999999998532 111112234455543
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEE
Q 006878 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (627)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~ 168 (627)
.+.++++|+||||.... ..+. + +
T Consensus 62 ----------------------------~~~~v~~V~GNhD~~~~-------~~~~--~----~---------------- 84 (182)
T PRK09453 62 ----------------------------YADKIIAVRGNCDSEVD-------QMLL--H----F---------------- 84 (182)
T ss_pred ----------------------------cCCceEEEccCCcchhh-------hhcc--C----C----------------
Confidence 24689999999996321 0000 0 0
Q ss_pred EEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcCCCE
Q 006878 169 PILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDF 248 (627)
Q Consensus 169 Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~~Dy 248 (627)
|. ..+. .++. -+..+|+++|+.... +. .+ ......|+
T Consensus 85 ~~----------------~~~~------------~~~~---------l~g~~i~l~HG~~~~--~~-~~---~~~~~~d~ 121 (182)
T PRK09453 85 PI----------------MAPY------------QQVL---------LEGKRLFLTHGHLYG--PE-NL---PALHDGDV 121 (182)
T ss_pred cc----------------cCce------------EEEE---------ECCeEEEEECCCCCC--hh-hc---ccccCCCE
Confidence 00 0000 0000 133578999985322 10 11 01235899
Q ss_pred EEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcE
Q 006878 249 VVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPF 315 (627)
Q Consensus 249 Va~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf 315 (627)
+++||+|.+... ... +..+++|||.-... + ..+..|+++++. .++.+.|.+-++.
T Consensus 122 vi~GHtH~p~~~--~~~--~~~~iNpGs~~~p~---~-~~~~s~~il~~~----~~~~~~~~~~~~~ 176 (182)
T PRK09453 122 LVYGHTHIPVAE--KQG--GIILFNPGSVSLPK---G-GYPASYGILDDN----VLSVIDLEGGEVI 176 (182)
T ss_pred EEECCCCCCcce--EEC--CEEEEECCCccccC---C-CCCCeEEEEECC----cEEEEECCCCeEE
Confidence 999999997653 232 47899999965332 1 234588999873 3466666665543
No 17
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.47 E-value=7.5e-13 Score=133.98 Aligned_cols=201 Identities=18% Similarity=0.302 Sum_probs=112.5
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccc
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~ 90 (627)
..+||+++||+|-. +.+++.+++.++++++|+||++|||.+... ..+.+..+++.|.+
T Consensus 3 ~~~kIl~iSDiHgn------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~-~~~~~~~~l~~l~~--------- 60 (224)
T cd07388 3 TVRYVLATSNPKGD------------LEALEKLVGLAPETGADAIVLIGNLLPKAA-KSEDYAAFFRILGE--------- 60 (224)
T ss_pred ceeEEEEEEecCCC------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCC-CHHHHHHHHHHHHh---------
Confidence 46899999999943 567899999999999999999999999752 23333334443332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhh--------CCceeeccceeecCCCc
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA--------CNLVNYFGKMVLGGSGV 162 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~--------~glVn~fg~~~l~~~~~ 162 (627)
.+.|+++|+||||.+. . ..|.. ++.++.-++.
T Consensus 61 --------------------------l~~pv~~V~GNhD~~v-~------~~l~~~~~~~~~~p~~~~lh~~~------- 100 (224)
T cd07388 61 --------------------------AHLPTFYVPGPQDAPL-W------EYLREAYNAELVHPEIRNVHETF------- 100 (224)
T ss_pred --------------------------cCCceEEEcCCCChHH-H------HHHHHHhcccccCccceecCCCe-------
Confidence 3589999999999751 1 12221 1223333321
Q ss_pred cceeEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhH---HhhcChhhhhhh-cCCCceEEEEEccCCCCCCC----c
Q 006878 163 GEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHA---VQWMRPEAQEEC-QVSDWFNILVLHQNRVKTNP----K 234 (627)
Q Consensus 163 ~~i~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~---v~~l~p~~~~~~-~~~~~fnILv~Hq~~~~~~~----~ 234 (627)
+.+. ..+.++|+|...... ..+.+... ..|+........ .......||++|.+..+.+. .
T Consensus 101 -------~~~~---g~~~~~GlGGs~~~~--~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h~GS 168 (224)
T cd07388 101 -------AFWR---GPYLVAGVGGEIADE--GEPEEHEALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNEQGS 168 (224)
T ss_pred -------EEec---CCeEEEEecCCcCCC--CCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCccCH
Confidence 1111 225566776432111 00000000 011100000000 01245799999998765421 1
Q ss_pred cccccccCC-cCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCc
Q 006878 235 NAINEHFLP-RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ 301 (627)
Q Consensus 235 ~~i~e~~lp-~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~ 301 (627)
..+- .++. ....++++||+|... ..+. +..|++||+ +.+| +++++++++..
T Consensus 169 ~alr-~~I~~~~P~l~i~GHih~~~---~~~g--~t~vvNpg~-----~~~g-----~~a~i~~~~~~ 220 (224)
T cd07388 169 HEVA-HLIKTHNPLVVLVGGKGQKH---ELLG--ASWVVVPGD-----LSEG-----RYALLDLRARK 220 (224)
T ss_pred HHHH-HHHHHhCCCEEEEcCCceeE---EEeC--CEEEECCCc-----ccCC-----cEEEEEecCcc
Confidence 1111 2222 235799999999432 3443 468999998 3322 57889987543
No 18
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.46 E-value=1.1e-12 Score=125.12 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=38.3
Q ss_pred cCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceE
Q 006878 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYR 303 (627)
Q Consensus 244 ~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~ 303 (627)
..+|+|++||.|..... ... +..+++|||....... .+.+|+++++.++.++
T Consensus 105 ~~~d~vi~GHtH~~~~~--~~~--~~~~iNpGs~~~~~~~----~~~~~~il~~~~~~~~ 156 (158)
T TIGR00040 105 LGVDVLIFGHTHIPVAE--ELR--GILLINPGSLTGPRNG----NTPSYAILDVDKDKVT 156 (158)
T ss_pred cCCCEEEECCCCCCccE--EEC--CEEEEECCccccccCC----CCCeEEEEEecCCeEE
Confidence 35799999999997642 333 4688999998754432 2569999999877654
No 19
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.45 E-value=1.6e-12 Score=122.84 Aligned_cols=54 Identities=28% Similarity=0.381 Sum_probs=40.0
Q ss_pred cCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEE
Q 006878 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306 (627)
Q Consensus 244 ~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~ 306 (627)
..+||+++||+|.+... ... +..+++|||...... ..+.+|+++++++ +++++.
T Consensus 101 ~~~d~vi~GHtH~~~~~--~~~--~~~~inpGs~~~~~~----~~~~~~~i~~~~~-~~~~~~ 154 (155)
T cd00841 101 GGADVVLYGHTHIPVIE--KIG--GVLLLNPGSLSLPRG----GGPPTYAILEIDD-KGEVEI 154 (155)
T ss_pred cCCCEEEECcccCCccE--EEC--CEEEEeCCCccCcCC----CCCCeEEEEEecC-CCcEEE
Confidence 45899999999998652 333 478999999765433 3578999999987 555553
No 20
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.44 E-value=5e-12 Score=123.67 Aligned_cols=63 Identities=21% Similarity=0.266 Sum_probs=44.4
Q ss_pred cCCCEEEcCCccccccCCeecCCCCceEecCCCccc-cccccCCcCCCeEEEEEEeCCceEEEEEECCC
Q 006878 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-TSLIEGESKPKHVLLLEIKENQYRPTKIPLTS 311 (627)
Q Consensus 244 ~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~-ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~t 311 (627)
..+|++++||+|.+... ... +..+++|||.-. .+-..+ .....|++++++.+.+.++.+.|.-
T Consensus 105 ~~~dvii~GHTH~p~~~--~~~--g~~viNPGSv~~~~~~~~~-~~~~syail~~~~~~~~~~~~~l~~ 168 (178)
T cd07394 105 LDVDILISGHTHKFEAF--EHE--GKFFINPGSATGAFSPLDP-NVIPSFVLMDIQGSKVVTYVYQLID 168 (178)
T ss_pred cCCCEEEECCCCcceEE--EEC--CEEEEECCCCCCCCCCCCC-CCCCeEEEEEecCCeEEEEEEEEEC
Confidence 35799999999997652 332 579999999742 221111 2235899999998888888888754
No 21
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.41 E-value=1.8e-13 Score=124.59 Aligned_cols=79 Identities=35% Similarity=0.534 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
|||+|+||+|+++.... . .+..+...+.+.++|+||++||+++...++.............
T Consensus 1 ~ri~~isD~H~~~~~~~-------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~----------- 61 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS-------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRL----------- 61 (200)
T ss_dssp EEEEEEEBBTTTHHHHC-------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEcCCCCCCcchh-------H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhh-----------
Confidence 89999999999964322 3 5678888899999999999999999987665543332101111
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
....+|+++++||||...
T Consensus 62 ----------------------~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 62 ----------------------LNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp ----------------------HHTTTTEEEEE-TTSSHH
T ss_pred ----------------------hhccccccccccccccce
Confidence 135799999999999865
No 22
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.40 E-value=1.1e-11 Score=128.39 Aligned_cols=86 Identities=24% Similarity=0.330 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCCCCCCc-hhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCh-HHHHHHHHHHHHhhcCCCccc
Q 006878 13 VRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d-~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~-~tl~~~~~lLr~l~~g~~p~~ 90 (627)
+||+++||+|++..... .....++...|+.+++.+++.+||+||++|||++...+.. ..+..+.+.|.+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~--------- 71 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDR--------- 71 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHh---------
Confidence 69999999998865432 2334567889999999999999999999999998776531 223333333332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~ 133 (627)
.++|+++++||||....
T Consensus 72 --------------------------l~~p~~~v~GNHD~~~~ 88 (267)
T cd07396 72 --------------------------LKGPVHHVLGNHDLYNP 88 (267)
T ss_pred --------------------------cCCCEEEecCccccccc
Confidence 35899999999998643
No 23
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.39 E-value=1.6e-12 Score=125.54 Aligned_cols=66 Identities=32% Similarity=0.525 Sum_probs=46.9
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeee
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVV 94 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~l 94 (627)
||++||+|.++ ..++. ..+.+.++|+||++|||++...+.. +..++.|+
T Consensus 1 i~~~sD~H~~~------------~~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~---~~~~~~l~-------------- 49 (188)
T cd07392 1 ILAISDIHGDV------------EKLEA--IILKAEEADAVIVAGDITNFGGKEA---AVEINLLL-------------- 49 (188)
T ss_pred CEEEEecCCCH------------HHHHH--HHhhccCCCEEEECCCccCcCCHHH---HHHHHHHH--------------
Confidence 68999999874 22333 4456789999999999998875532 12223333
Q ss_pred chhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 95 SDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 95 sd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
..++|+|+|+||||.+.
T Consensus 50 ---------------------~~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 50 ---------------------AIGVPVLAVPGNCDTPE 66 (188)
T ss_pred ---------------------hcCCCEEEEcCCCCCHH
Confidence 24689999999999753
No 24
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.38 E-value=6.7e-12 Score=127.99 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCC---CCChHHHHHHHHHHHHhhcCCCcc
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN---KPSRSTLVKAIEILRRHCLNDRPV 89 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~---~Ps~~tl~~~~~lLr~l~~g~~p~ 89 (627)
|||+|+||+|+|.... +....|.+.++ ..+.+||+|+++||+||.. .........+.++|+++.
T Consensus 1 M~i~~iSDlHl~~~~~------~~~~~~~~~l~-~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~------ 67 (241)
T PRK05340 1 MPTLFISDLHLSPERP------AITAAFLRFLR-GEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALS------ 67 (241)
T ss_pred CcEEEEeecCCCCCCh------hHHHHHHHHHH-hhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHH------
Confidence 7999999999996432 12344555553 2456899999999999852 111122344556666652
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
..++|||+|+||||...
T Consensus 68 --------------------------~~g~~v~~v~GNHD~~~ 84 (241)
T PRK05340 68 --------------------------DSGVPCYFMHGNRDFLL 84 (241)
T ss_pred --------------------------HcCCeEEEEeCCCchhh
Confidence 35689999999999753
No 25
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.36 E-value=2.1e-11 Score=125.72 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=36.2
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEA-FEEICSIAEQKEVDFVLLGGDLFHENKP 67 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~t-Feeil~~A~~~~VD~VLlaGDLFd~~~P 67 (627)
|+|+||+|+|...... ... .+.+++.+++.+||+||++||++|....
T Consensus 2 ~~~iSDlH~g~~~~~~------~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~ 49 (256)
T cd07401 2 FVHISDIHVSSFHPPN------RAQDETFCSNFIDVIKPALVLATGDLTDNKTG 49 (256)
T ss_pred EEEecccccCCcCchh------hhhHHHHHHHHHHhhCCCEEEEcccccccccc
Confidence 7999999999654321 111 3567888889999999999999987653
No 26
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.35 E-value=3.8e-11 Score=119.92 Aligned_cols=202 Identities=23% Similarity=0.372 Sum_probs=117.1
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCCChHHHHHHHHH--HHHhhcCC
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKAIEI--LRRHCLND 86 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLF--d~~~Ps~~tl~~~~~l--Lr~l~~g~ 86 (627)
.+||||.+||+|-. +..|.+++..|...++|+++++|||. |-..+- . +.+. +..+
T Consensus 2 ~~mkil~vtDlHg~------------~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~-~----~~~~~~~e~l---- 60 (226)
T COG2129 2 KKMKILAVTDLHGS------------EDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKE-V----AEELNKLEAL---- 60 (226)
T ss_pred CcceEEEEeccccc------------hHHHHHHHHHHhhccCCEEEEecceehhhcCchH-H----HHhhhHHHHH----
Confidence 46999999999976 35688999999999999999999998 765442 2 2222 2222
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCcccee
Q 006878 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEIT 166 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~ 166 (627)
...++|||+++||-|.+.- .++|..++ ++..++..
T Consensus 61 ----------------------------~~~~~~v~avpGNcD~~~v------~~~l~~~~-~~v~~~v~---------- 95 (226)
T COG2129 61 ----------------------------KELGIPVLAVPGNCDPPEV------IDVLKNAG-VNVHGRVV---------- 95 (226)
T ss_pred ----------------------------HhcCCeEEEEcCCCChHHH------HHHHHhcc-cccccceE----------
Confidence 1357999999999987742 24555533 34444321
Q ss_pred EEEEEEeeCCeeEEEEecCCCCHHHH--HhhhcCh---hHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCc---cccc
Q 006878 167 VYPILIRKGSTAVALYGLGNIRDERL--NRMFQTP---HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK---NAIN 238 (627)
Q Consensus 167 ~~Pill~kg~~~valyGl~~i~derl--~~~f~~~---~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~---~~i~ 238 (627)
+-++ +.+.|+|.....-. .+.|.+. ..++++-.. .....||+++|.+..+..-. .+..
T Consensus 96 ------~i~~--~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~------~~~~~~Il~~HaPP~gt~~d~~~g~~h 161 (226)
T COG2129 96 ------EIGG--YGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKK------ADNPVNILLTHAPPYGTLLDTPSGYVH 161 (226)
T ss_pred ------EecC--cEEEEecccCCCCCCCccccCHHHHHHHHHHHHhc------ccCcceEEEecCCCCCccccCCCCccc
Confidence 1122 22333332211000 0001000 122332221 12334599999987654221 1111
Q ss_pred ---c---ccCCcCCC--EEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEE
Q 006878 239 ---E---HFLPRFLD--FVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTK 306 (627)
Q Consensus 239 ---e---~~lp~~~D--yVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~ 306 (627)
. .++ +.++ +.++||+|+..-. .++ .++.+++||+ +. ..+++++++.+..++.+.
T Consensus 162 vGS~~vr~~i-eefqP~l~i~GHIHEs~G~-d~i--G~TivVNPG~-----~~-----~g~yA~i~l~~~~Vk~~~ 223 (226)
T COG2129 162 VGSKAVRKLI-EEFQPLLGLHGHIHESRGI-DKI--GNTIVVNPGP-----LG-----EGRYALIELEKEVVKLEQ 223 (226)
T ss_pred cchHHHHHHH-HHhCCceEEEeeecccccc-ccc--CCeEEECCCC-----cc-----CceEEEEEecCcEEEEEE
Confidence 0 111 2244 9999999986443 233 2478999998 32 457999999987666554
No 27
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.35 E-value=1.4e-11 Score=125.16 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=47.8
Q ss_pred EEEEcCCCCCCCCCc--hhch---hcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcc
Q 006878 15 ILVATDCHLGYMEKD--EIRR---HDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (627)
Q Consensus 15 ILh~SD~HLG~~~~d--~~r~---~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~ 89 (627)
|.++||+|++..... +..+ .+..+.+.+.++.+. .+||+||++|||++...+. .....++.|+.+
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~-~~~D~viiaGDl~~~~~~~--~~~~~l~~l~~l------- 70 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVV-APEDIVLIPGDISWAMKLE--EAKLDLAWIDAL------- 70 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcC-CCCCEEEEcCCCccCCChH--HHHHHHHHHHhC-------
Confidence 578999999963211 1112 223333444433333 2899999999999654332 233444444432
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
..|+|+|+||||..
T Consensus 71 ----------------------------~~~v~~V~GNHD~~ 84 (232)
T cd07393 71 ----------------------------PGTKVLLKGNHDYW 84 (232)
T ss_pred ----------------------------CCCeEEEeCCcccc
Confidence 34899999999984
No 28
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.35 E-value=9.1e-12 Score=123.10 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccc
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~ 90 (627)
+.|||+|+||+|+|..............++..+.+.+.+.+||+||++|||++...+.........+++..+
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l-------- 72 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPM-------- 72 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHH--------
Confidence 369999999999998643211111123445555555667899999999999998876532222222222222
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCC
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDD 130 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~ 130 (627)
...++|+++++||||.
T Consensus 73 ------------------------~~~~~p~~~~~GNHD~ 88 (199)
T cd07383 73 ------------------------IDRKIPWAATFGNHDG 88 (199)
T ss_pred ------------------------HHcCCCEEEECccCCC
Confidence 1246999999999994
No 29
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.27 E-value=3.5e-11 Score=122.43 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=53.8
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceee
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQV 93 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~ 93 (627)
||+++||+|+++...+ ....++.+++.+.+.++|+||++|||++... . ....++.|++.
T Consensus 1 ki~~iSDlH~~~~~~~------~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~---~-~~~~~~~l~~~----------- 59 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFD------TEEMLETLAQYLKKQKIDHLHIAGDISNDFQ---R-SLPFIEKLQEL----------- 59 (239)
T ss_pred CEEEEEeecCCCCCCC------HHHHHHHHHHHHHhcCCCEEEECCccccchh---h-HHHHHHHHHHh-----------
Confidence 6999999999753322 2345788899898999999999999998631 1 12233333321
Q ss_pred echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 94 VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 94 lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
.++|||+|+||||..
T Consensus 60 -----------------------~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 60 -----------------------KGIKVTFNAGNHDML 74 (239)
T ss_pred -----------------------cCCcEEEECCCCCCC
Confidence 358999999999976
No 30
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.25 E-value=2.3e-10 Score=114.89 Aligned_cols=80 Identities=23% Similarity=0.224 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
++|++++|+|.+.... + ......++.+++.+.+.++|+||++|||++.... ......+.++++.+.
T Consensus 1 f~~~~~~D~q~~~~~~-~---~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-~~~~~~~~~~~~~l~--------- 66 (214)
T cd07399 1 FTLAVLPDTQYYTESY-P---EVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-DAEWEAADKAFARLD--------- 66 (214)
T ss_pred CEEEEecCCCcCCcCC-H---HHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-HHHHHHHHHHHHHHH---------
Confidence 6899999999975422 1 1222456888999999999999999999997752 334555666666541
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCC
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD 129 (627)
..++|+++++||||
T Consensus 67 -----------------------~~~~p~~~~~GNHD 80 (214)
T cd07399 67 -----------------------KAGIPYSVLAGNHD 80 (214)
T ss_pred -----------------------HcCCcEEEECCCCc
Confidence 25799999999999
No 31
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.23 E-value=5.5e-11 Score=120.60 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=48.5
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCC---CCChHHHHHHHHHHHHhhcCCCccce
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN---KPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~---~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
++|+||+|+|....+ ..+.|-+.+.... .+||+|+++||+||.. .+.......+.++|+++.
T Consensus 1 ~~~iSDlHl~~~~~~------~~~~~l~~l~~~~-~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~-------- 65 (231)
T TIGR01854 1 TLFISDLHLSPERPD------ITALFLDFLREEA-RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVS-------- 65 (231)
T ss_pred CeEEEecCCCCCChh------HHHHHHHHHHhhh-ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHH--------
Confidence 379999999964321 1222322222221 2899999999999942 112222334455555541
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
..++|||+|+||||...
T Consensus 66 ------------------------~~~~~v~~v~GNHD~~~ 82 (231)
T TIGR01854 66 ------------------------DQGVPCYFMHGNRDFLI 82 (231)
T ss_pred ------------------------HCCCeEEEEcCCCchhh
Confidence 34689999999999753
No 32
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.22 E-value=2.1e-10 Score=111.66 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=44.4
Q ss_pred cCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECC
Q 006878 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLT 310 (627)
Q Consensus 244 ~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~ 310 (627)
..+|.+++||+|.+.. ++.. +..+++|||+-.... ..++.++++++++.++.+..+...
T Consensus 108 ~~~Dvli~GHTH~p~~--~~~~--~i~~vNPGS~s~pr~----~~~~sy~il~~~~~~~~~~~~~~~ 166 (172)
T COG0622 108 LGADVLIFGHTHKPVA--EKVG--GILLVNPGSVSGPRG----GNPASYAILDVDNLEVEVLFLERD 166 (172)
T ss_pred cCCCEEEECCCCcccE--EEEC--CEEEEcCCCcCCCCC----CCCcEEEEEEcCCCEEEEEEeecc
Confidence 3589999999999876 3443 478999999865443 257799999999887777665443
No 33
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.15 E-value=3e-10 Score=118.94 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=62.4
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCC-CCCChHHHHHHHHHHHHhhcCC
Q 006878 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE-NKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~-~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
......||+|+||+|..... ....+.+.....+.+|+|+++||+++. ..+... .++..|+++
T Consensus 40 ~~~~~~~iv~lSDlH~~~~~----------~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~---~~~~~L~~L---- 102 (284)
T COG1408 40 ASLQGLKIVQLSDLHSLPFR----------EEKLALLIAIANELPDLIVLTGDYVDGDRPPGVA---ALALFLAKL---- 102 (284)
T ss_pred cccCCeEEEEeehhhhchhh----------HHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHH---HHHHHHHhh----
Confidence 34567899999999998533 122333334444555999999999996 444433 456666664
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCC
Q 006878 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN 147 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~g 147 (627)
....+||+|.||||..........=++++..+
T Consensus 103 -----------------------------~~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~ 134 (284)
T COG1408 103 -----------------------------KAPLGVFAVLGNHDYGVDRSNVYIGDLLEELG 134 (284)
T ss_pred -----------------------------hccCCEEEEecccccccccccchhhhhhhhcc
Confidence 46789999999999987654322224555544
No 34
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=99.12 E-value=7.1e-10 Score=113.15 Aligned_cols=212 Identities=20% Similarity=0.277 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCCh-HHHHHHHHHHHHhhcCCCccc
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~~Ps~-~tl~~~~~lLr~l~~g~~p~~ 90 (627)
++|+|+||+| |....- -..-.+..+..+++..+++++| ++|.+||+++...++. ......+++|+.
T Consensus 1 l~i~~~sD~h-g~~~~~--~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~--------- 68 (252)
T cd00845 1 LTILHTNDLH-GHFEPA--GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNA--------- 68 (252)
T ss_pred CEEEEecccc-cCcccc--CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHh---------
Confidence 5899999999 543210 0112356788889988888998 7789999998766532 111123333332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCC-ccceeEEE
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSG-VGEITVYP 169 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~-~~~i~~~P 169 (627)
.++ .+++.||||...+...+ .+.+...+.. +++........ .....+.|
T Consensus 69 --------------------------~g~-d~~~~GNHe~d~g~~~l--~~~~~~~~~~-~l~aNv~~~~~~~~~~~~~~ 118 (252)
T cd00845 69 --------------------------LGY-DAVTIGNHEFDYGLDAL--AELYKDANFP-VLSANLYDKDTGTGPPWAKP 118 (252)
T ss_pred --------------------------cCC-CEEeeccccccccHHHH--HHHHHhCCCC-EEEEeeeccCCCCCCCCcCC
Confidence 233 34566999986654432 2344444421 11110000000 00011223
Q ss_pred -EEEeeCCeeEEEEecCCCCHHHHHh-------hhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCcccccccc
Q 006878 170 -ILIRKGSTAVALYGLGNIRDERLNR-------MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHF 241 (627)
Q Consensus 170 -ill~kg~~~valyGl~~i~derl~~-------~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~ 241 (627)
..+..++.+|++.|+.......... .+.. ..+.+... .........+.|++.|...... ..+.+.
T Consensus 119 ~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~D~vIvl~H~g~~~~---~~la~~- 191 (252)
T cd00845 119 YKIIEVDGVKIGVIGLTTPDTPTYTPLGWIIGLPFED--LAEAVAVA-EELLAEGADVIILLSHLGLDDD---EELAEE- 191 (252)
T ss_pred eEEEEECCEEEEEEEeccccceeecCCCcccCceecC--HHHHHHHH-HHHHhCCCCEEEEEeccCccch---HHHHhc-
Confidence 3456788999999986543211100 0011 01111000 0011134678999999976431 111111
Q ss_pred CCcCCCEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 242 LPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 242 lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
+ .++|+|+.||.|..+..|... .+..++|+|+
T Consensus 192 ~-~giDlvlggH~H~~~~~~~~~--~~~~v~~~g~ 223 (252)
T cd00845 192 V-PGIDVILGGHTHHLLEEPEVV--NGTLIVQAGK 223 (252)
T ss_pred C-CCccEEEcCCcCcccCCCccc--CCEEEEeCCh
Confidence 2 469999999999976543332 3568888886
No 35
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.08 E-value=3.7e-09 Score=110.13 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=54.0
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC-hHHHHHHHHHHHHhhcCCCc
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS-RSTLVKAIEILRRHCLNDRP 88 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps-~~tl~~~~~lLr~l~~g~~p 88 (627)
.+.+||++++|+|.+.. .+..+++.+.+. ..++|+||++|||....... ......+++.+..+
T Consensus 2 ~~~~~f~v~gD~~~~~~--------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~------ 65 (294)
T cd00839 2 DTPFKFAVFGDMGQNTN--------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPL------ 65 (294)
T ss_pred CCcEEEEEEEECCCCCC--------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHH------
Confidence 35699999999998622 123455555443 47999999999998654322 12233444444443
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006878 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (627)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~ 133 (627)
...+|+++++||||....
T Consensus 66 ---------------------------~~~~P~~~~~GNHD~~~~ 83 (294)
T cd00839 66 ---------------------------ASYVPYMVTPGNHEADYN 83 (294)
T ss_pred ---------------------------HhcCCcEEcCcccccccC
Confidence 236899999999998654
No 36
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.05 E-value=2e-09 Score=109.85 Aligned_cols=65 Identities=29% Similarity=0.342 Sum_probs=45.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
+||+++||+|..+.. ...+.+.+.+||+||++||+.+.. ...++.|++
T Consensus 1 ~rIa~isDiHg~~~~--------------~~~~~l~~~~pD~Vl~~GDi~~~~-------~~~~~~l~~----------- 48 (238)
T cd07397 1 LRIAIVGDVHGQWDL--------------EDIKALHLLQPDLVLFVGDFGNES-------VQLVRAISS----------- 48 (238)
T ss_pred CEEEEEecCCCCchH--------------HHHHHHhccCCCEEEECCCCCcCh-------HHHHHHHHh-----------
Confidence 589999999965321 112355677999999999998642 123333433
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~ 133 (627)
...|+|+|.||||....
T Consensus 49 ------------------------l~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 49 ------------------------LPLPKAVILGNHDAWYD 65 (238)
T ss_pred ------------------------CCCCeEEEcCCCccccc
Confidence 24699999999998654
No 37
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.04 E-value=1.2e-08 Score=105.60 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=58.0
Q ss_pred HHhhcChhhhhhhcCCCceEEEEEccCCCCCCCcc---ccc---cccC-CcCCCEEEcCCccccccCCeecCCCCceEec
Q 006878 201 AVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKN---AIN---EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (627)
Q Consensus 201 ~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~---~i~---e~~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~y 273 (627)
.++|+...... ....+.|++.|.+........ ... ..++ ...+++|++||.|...... ....+...+.
T Consensus 153 Q~~wL~~~L~~---~~~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~--~~~~~~~~i~ 227 (277)
T cd07378 153 QLAWLEKTLAA---STADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK--DDGSGTSFVV 227 (277)
T ss_pred HHHHHHHHHHh---cCCCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccceeee--cCCCCcEEEE
Confidence 45676554321 123578999999875432111 011 1222 2458999999999875431 1111334444
Q ss_pred CCCccc--ccccc----------CCcCCCeEEEEEEeCCceEEEEEEC
Q 006878 274 PGSSVA--TSLIE----------GESKPKHVLLLEIKENQYRPTKIPL 309 (627)
Q Consensus 274 pGS~v~--ts~~e----------gE~~~Kgv~lveI~~~~~~~e~IpL 309 (627)
.|+.-. ....+ ......|+.+++|.++.+.++++..
T Consensus 228 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~~~~~ 275 (277)
T cd07378 228 SGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVRFYDA 275 (277)
T ss_pred eCCCcccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEEEECC
Confidence 444321 11100 0124589999999999888887754
No 38
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.02 E-value=1.9e-09 Score=110.76 Aligned_cols=80 Identities=31% Similarity=0.430 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
|||+|+||+|++. ...+....++.+++.++..++|+||++|||.+.. .......+.++|++.
T Consensus 1 ~~i~~isD~H~~~------~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~--~~~~~~~~~~~l~~~---------- 62 (301)
T COG1409 1 MRIAHISDLHLGA------LGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDG--EPEEYRRLKELLARL---------- 62 (301)
T ss_pred CeEEEEecCcccc------cccchHHHHHHHHHHHhcCCCCEEEEccCcCCCC--CHHHHHHHHHHHhhc----------
Confidence 7999999999995 2334456788888888889999999999999984 334444455555421
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~ 133 (627)
....|+++++||||....
T Consensus 63 -----------------------~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 63 -----------------------ELPAPVIVVPGNHDARVV 80 (301)
T ss_pred -----------------------cCCCceEeeCCCCcCCch
Confidence 356899999999998754
No 39
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.02 E-value=3.6e-09 Score=108.05 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=29.2
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH--HcCCCEEEEcCCCCCCC
Q 006878 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--QKEVDFVLLGGDLFHEN 65 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~--~~~VD~VLlaGDLFd~~ 65 (627)
+++||+|||..... .+.+..|.+.+.... ..++|+|+++||+||..
T Consensus 2 ~~iSDlHl~~~~~~----~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~ 49 (243)
T cd07386 2 VFISDVHVGSKTFL----EDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGI 49 (243)
T ss_pred EEecccCCCchhhh----HHHHHHHHHHHcCCcccccCccEEEEeCCccccc
Confidence 68999999965432 122333333333221 13679999999999974
No 40
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=99.02 E-value=5.8e-10 Score=108.09 Aligned_cols=83 Identities=27% Similarity=0.363 Sum_probs=59.1
Q ss_pred EEEcCCCCCCCCC----c-hhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccc
Q 006878 16 LVATDCHLGYMEK----D-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 16 Lh~SD~HLG~~~~----d-~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~ 90 (627)
|++||+|||+... + .....+...+++.+.+++.+.+||.|+++||+||...+........+.++..
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~--------- 71 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRL--------- 71 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHh---------
Confidence 6899999998642 1 1233344578899999999999999999999999866544333222221111
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
...++||++|.||||..
T Consensus 72 ------------------------~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 72 ------------------------LAKDVDVILIRGNHDGG 88 (172)
T ss_pred ------------------------ccCCCeEEEEcccCccc
Confidence 14578999999999974
No 41
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.01 E-value=1.7e-08 Score=113.67 Aligned_cols=49 Identities=24% Similarity=0.393 Sum_probs=36.6
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH---------HcCCCEEEEcCCCCCC
Q 006878 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE---------QKEVDFVLLGGDLFHE 64 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~---------~~~VD~VLlaGDLFd~ 64 (627)
....++|+++||+|+|..... ...|+.+++... ..++|.|+++||+|+.
T Consensus 240 ~~~~~~i~~ISDlHlgs~~~~-------~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~ 297 (504)
T PRK04036 240 KDEKVYAVFISDVHVGSKEFL-------EDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDG 297 (504)
T ss_pred CCCccEEEEEcccCCCCcchh-------HHHHHHHHHHHhCCCccchhhhhcCCEEEEeCccccc
Confidence 345689999999999975431 133555555555 7789999999999986
No 42
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.00 E-value=2.2e-09 Score=102.85 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=30.3
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~P 67 (627)
|+++||+|++...... .+.+.+.+.++|+|+++|||++...+
T Consensus 1 ~~~iSDlH~~~~~~~~-----------~~~~~~~~~~~d~li~~GDi~~~~~~ 42 (166)
T cd07404 1 IQYLSDLHLEFEDNLA-----------DLLNFPIAPDADILVLAGDIGYLTDA 42 (166)
T ss_pred CceEccccccCccccc-----------cccccCCCCCCCEEEECCCCCCCcch
Confidence 5799999998643211 11144567899999999999987644
No 43
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.00 E-value=1.9e-09 Score=100.01 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
||+++||+|..+. .....++|+|+++||+++...+ ..+..++++|++
T Consensus 1 ~i~~isD~H~~~~-------------------~~~~~~~D~vi~~GD~~~~~~~--~~~~~~~~~l~~ 47 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TISIPDGDVLIHAGDLTERGTL--EELQKFLDWLKS 47 (135)
T ss_pred CEEEEeCCCCCCC-------------------cCcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh
Confidence 6999999997642 1234689999999999987654 334455555554
No 44
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.98 E-value=5.2e-09 Score=104.71 Aligned_cols=228 Identities=22% Similarity=0.364 Sum_probs=98.1
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
+=|||-+||.|-. +..++.++..+.+.++|+|+++|||.-....+.+- .++... ++. -||+.-.
T Consensus 5 ~~kilA~s~~~g~------------~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~-~~a~~~-~r~--p~k~~i~ 68 (255)
T PF14582_consen 5 VRKILAISNFRGD------------FELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEY-ERAQEE-QRE--PDKSEIN 68 (255)
T ss_dssp --EEEEEE--TT-------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHH-HHHHHT-T------THHHH
T ss_pred chhheeecCcchH------------HHHHHHHHhhccccCCCEEEEeccccccchhhhHH-HHHhhh-ccC--cchhhhh
Confidence 3589999999854 56788899999999999999999998543222111 100000 000 0111000
Q ss_pred eeechhh---hhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhh----hCCceeeccceeecCCCccc
Q 006878 92 QVVSDQA---VNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS----ACNLVNYFGKMVLGGSGVGE 164 (627)
Q Consensus 92 ~~lsd~~---~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~----~~glVn~fg~~~l~~~~~~~ 164 (627)
+--..++ .+|.+. ++ ..++|+|+||||||.|... .+. +.+. .+++.+.-+.
T Consensus 69 ~e~~~~~e~~~~ff~~---L~------~~~~p~~~vPG~~Dap~~~-~lr--~a~~~e~v~p~~~~vH~s---------- 126 (255)
T PF14582_consen 69 EEECYDSEALDKFFRI---LG------ELGVPVFVVPGNMDAPERF-FLR--EAYNAEIVTPHIHNVHES---------- 126 (255)
T ss_dssp HHHHHHHHHHHHHHHH---HH------CC-SEEEEE--TTS-SHHH-HHH--HHHHCCCC-TTEEE-CTC----------
T ss_pred hhhhhhHHHHHHHHHH---HH------hcCCcEEEecCCCCchHHH-HHH--HHhccceeccceeeeeee----------
Confidence 0000000 112222 21 4689999999999998642 111 1111 1111111111
Q ss_pred eeEEEEEEeeCCeeEEEEecCC-CC------HHHHHhh-hcChhHHhhcChhhhhhhcCCCceEEEEEccCCC-CCC---
Q 006878 165 ITVYPILIRKGSTAVALYGLGN-IR------DERLNRM-FQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRV-KTN--- 232 (627)
Q Consensus 165 i~~~Pill~kg~~~valyGl~~-i~------derl~~~-f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~-~~~--- 232 (627)
+...+|. +-+.|+|- +. ...|..- +.....+++++. ......|+++|.+.. ..+
T Consensus 127 -----f~~~~g~--y~v~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~e-------lk~~r~IlLfhtpPd~~kg~~h 192 (255)
T PF14582_consen 127 -----FFFWKGE--YLVAGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRE-------LKDYRKILLFHTPPDLHKGLIH 192 (255)
T ss_dssp -----EEEETTT--EEEEEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGG-------CTSSEEEEEESS-BTBCTCTBT
T ss_pred -----ecccCCc--EEEEecCccccCCCccccccccchHHHHHHHHHHHHh-------cccccEEEEEecCCccCCCccc
Confidence 1112222 33334432 11 1111100 000012333322 235579999999872 111
Q ss_pred -CccccccccC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEE
Q 006878 233 -PKNAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPT 305 (627)
Q Consensus 233 -~~~~i~e~~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e 305 (627)
....+ .+++ ....+++++||+|+.... ..+. ...|++|||. .+| .+.+|++.++++.+.
T Consensus 193 ~GS~~V-~dlIk~~~P~ivl~Ghihe~~~~-e~lG--~TlVVNPGsL-----~~G-----~yAvI~l~~~~v~~g 253 (255)
T PF14582_consen 193 VGSAAV-RDLIKTYNPDIVLCGHIHESHGK-ESLG--KTLVVNPGSL-----AEG-----DYAVIDLEQDKVEFG 253 (255)
T ss_dssp TSBHHH-HHHHHHH--SEEEE-SSS-EE---EEET--TEEEEE--BG-----GGT-----EEEEEETTTTEEEEE
T ss_pred ccHHHH-HHHHHhcCCcEEEecccccchhh-HHhC--CEEEecCccc-----ccC-----ceeEEEecccccccC
Confidence 11111 1222 235789999999998643 3343 4799999984 333 799999988776543
No 45
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.98 E-value=9.1e-09 Score=107.03 Aligned_cols=217 Identities=18% Similarity=0.294 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCCCCCC-c----hhchhcHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCChHH-------HHHHHHHH
Q 006878 13 VRILVATDCHLGYMEK-D----EIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-------LVKAIEIL 79 (627)
Q Consensus 13 mKILh~SD~HLG~~~~-d----~~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~t-------l~~~~~lL 79 (627)
++|||++|+| |+.+. + .....-.+..+..+++..+++++|.|++ +||+|+....+... -...+++|
T Consensus 1 l~il~t~D~H-g~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLH-GNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccc-cceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHH
Confidence 5899999999 66432 1 0011123566788888888889999998 99999864211110 01233333
Q ss_pred HHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecC
Q 006878 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGG 159 (627)
Q Consensus 80 r~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~ 159 (627)
+. .+.. ++..||||...+...+ .+.+...+. .+++......
T Consensus 80 n~-----------------------------------~g~d-~~~lGNHe~d~g~~~l--~~~~~~~~~-~~l~aNv~~~ 120 (277)
T cd07410 80 NA-----------------------------------LGYD-AGTLGNHEFNYGLDYL--DKVIKQANF-PVLSANVIDA 120 (277)
T ss_pred Hh-----------------------------------cCCC-EEeecccCcccCHHHH--HHHHHhCCC-CEEEEEEEeC
Confidence 32 2344 5556999976554332 234444442 1111100000
Q ss_pred CCccceeEEE-EEEeeC-CeeEEEEecCCCCHHHHH-------hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCC
Q 006878 160 SGVGEITVYP-ILIRKG-STAVALYGLGNIRDERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (627)
Q Consensus 160 ~~~~~i~~~P-ill~kg-~~~valyGl~~i~derl~-------~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~ 229 (627)
+...-.+.| .+++.+ +.+|++.|+-........ -.|.++ ..++...++... ..-.+-|++.|....
T Consensus 121 -~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~ 196 (277)
T cd07410 121 -DTGEPFLKPYVILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFE 196 (277)
T ss_pred -CCCCcccCCEEEEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcC
Confidence 000111345 345778 899999998532110000 001111 011111111111 124578999999765
Q ss_pred CCCCccccc----cccCC--cCCCEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 230 KTNPKNAIN----EHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 230 ~~~~~~~i~----e~~lp--~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
......... ..+.. .++|+|+.||.|.....+ . ..+..++|+|+
T Consensus 197 ~~~~~~~~~~~~~~~la~~~~~vD~IlgGHsH~~~~~~-~--~~~~~v~q~g~ 246 (277)
T cd07410 197 RDLEESLTGENAAYELAEEVPGIDAILTGHQHRRFPGP-T--VNGVPVVQPGN 246 (277)
T ss_pred CCcccccCCccHHHHHHhcCCCCcEEEeCCCccccccC-C--cCCEEEEcCCh
Confidence 421000011 01111 369999999999876432 1 23467888876
No 46
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.89 E-value=3.4e-09 Score=107.56 Aligned_cols=83 Identities=27% Similarity=0.294 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCCCCCCch-----hchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 006878 13 VRILVATDCHLGYMEKDE-----IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~-----~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~ 87 (627)
-+.|++||+|||+...-. ....+..++++.+.+++.+.+||.|+++||+||...+. .+...+.++|+.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-~~~~~~~~~l~~~----- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-LEWRFIREFIEVT----- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-HHHHHHHHHHHhc-----
Confidence 468999999999854211 22234557889999999999999999999999987654 4444555566542
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
..++++|+||||..
T Consensus 89 ------------------------------~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 89 ------------------------------FRDLILIRGNHDAL 102 (225)
T ss_pred ------------------------------CCcEEEECCCCCCc
Confidence 35999999999964
No 47
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.88 E-value=4.1e-09 Score=104.74 Aligned_cols=43 Identities=26% Similarity=0.205 Sum_probs=28.9
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Q 006878 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHE 64 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~ 64 (627)
+++||+|+|...... ...+...+....+.++|.|+++||+||.
T Consensus 1 ~~iSDlHlg~~~~~~------~~~~~~~~~~~~~~~~~~lvl~GDi~d~ 43 (217)
T cd07398 1 LFISDLHLGDGGPAA------DFLLLFLLAALALGEADALYLLGDIFDL 43 (217)
T ss_pred CEeeeecCCCCCCCH------HHHHHHHHhhhccCCCCEEEEeccEEEE
Confidence 479999999755432 1223333322225799999999999985
No 48
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.88 E-value=2e-08 Score=103.70 Aligned_cols=212 Identities=20% Similarity=0.271 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCChHH-HHHHHHHHHHhhcCCCccc
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~~Ps~~t-l~~~~~lLr~l~~g~~p~~ 90 (627)
++|||++|+| +..... ....-.+..+..+++..+++++| ++|.+||+|+....+... ....++.|+.+
T Consensus 1 ~~il~~nd~~-~~~~~~-~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l-------- 70 (257)
T cd07406 1 FTILHFNDVY-EIAPLD-GGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNAL-------- 70 (257)
T ss_pred CeEEEEccce-eecccC-CCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhc--------
Confidence 5899999999 433211 01111356678888888888888 999999999865322110 01233333322
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce-eEE-
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI-TVY- 168 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i-~~~- 168 (627)
+. .+++.||||...+...+. .++..++. .+++.......+...+ .+.
T Consensus 71 ---------------------------~~-d~~~~GNHefd~g~~~l~--~~~~~~~~-~~L~aNi~~~~~~~~~~~~~~ 119 (257)
T cd07406 71 ---------------------------GV-DLACFGNHEFDFGEDQLQ--KRLGESKF-PWLSSNVFDATGGGPLPNGKE 119 (257)
T ss_pred ---------------------------CC-cEEeecccccccCHHHHH--HHHhhCCC-CEEEEEEEECCCCcccCCCCC
Confidence 22 366789999866544332 34444432 1111110000000011 011
Q ss_pred EEEEeeCCeeEEEEecCCCCHH-HHH-----hhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccC
Q 006878 169 PILIRKGSTAVALYGLGNIRDE-RLN-----RMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFL 242 (627)
Q Consensus 169 Pill~kg~~~valyGl~~i~de-rl~-----~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~l 242 (627)
...++.++.+|++.|+-..... .+. -.|.++ ++.++............+-|++.|...... ..+... +
T Consensus 120 ~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d---~~la~~-~ 193 (257)
T cd07406 120 SAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDY--VETARELVDELREQGADLIIALTHMRLPND---KRLARE-V 193 (257)
T ss_pred eEEEEECCeEEEEEEEecccccccccCCCCcceEcCH--HHHHHHHHHHHHhCCCCEEEEEeccCchhh---HHHHHh-C
Confidence 2456778999999998543211 000 001111 111111000000123468899999965311 112222 2
Q ss_pred CcCCCEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 243 PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 243 p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
.++|+|+.||.|..+. ... .+..+++||+
T Consensus 194 -~~iD~IlgGH~H~~~~--~~~--~~t~vv~~g~ 222 (257)
T cd07406 194 -PEIDLILGGHDHEYIL--VQV--GGTPIVKSGS 222 (257)
T ss_pred -CCCceEEecccceeEe--eeE--CCEEEEeCCc
Confidence 4699999999999763 222 2467888876
No 49
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.82 E-value=4.9e-08 Score=101.04 Aligned_cols=213 Identities=17% Similarity=0.211 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCCCCCCchh----------chhcHHHHHHHHHHHHHHc-CCCEEE-EcCCCCCCCCCChHHHH---HHHH
Q 006878 13 VRILVATDCHLGYMEKDEI----------RRHDSFEAFEEICSIAEQK-EVDFVL-LGGDLFHENKPSRSTLV---KAIE 77 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~----------r~~Ds~~tFeeil~~A~~~-~VD~VL-laGDLFd~~~Ps~~tl~---~~~~ 77 (627)
++|||++|+|--+...... ...-.+..+..+++.+++. .+|.|+ .+||+|+....+ .+. ..++
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~--~~~~g~~~~~ 78 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEA--LYTRGQAMVD 78 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHH--hhcCChhHHH
Confidence 5799999999765432111 0111367788889988888 999885 599999875322 121 2222
Q ss_pred HHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceee
Q 006878 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL 157 (627)
Q Consensus 78 lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l 157 (627)
+|+. +++.++.||||...+...+ ...++..+. .+++....
T Consensus 79 ~l~~-------------------------------------~g~da~~GNHefd~g~~~l--~~~~~~~~~-~~l~aN~~ 118 (264)
T cd07411 79 ALNA-------------------------------------LGVDAMVGHWEFTYGPERV--RELFGRLNW-PFLAANVY 118 (264)
T ss_pred HHHh-------------------------------------hCCeEEecccccccCHHHH--HHHHhhCCC-CEEEEEEE
Confidence 2221 4444444999976654433 234555442 11111100
Q ss_pred cCCCccceeEEEE-EEeeCCeeEEEEecCCCCHHHHH-------hhhcChhHHhhcChhhhhh-hcCCCceEEEEEccCC
Q 006878 158 GGSGVGEITVYPI-LIRKGSTAVALYGLGNIRDERLN-------RMFQTPHAVQWMRPEAQEE-CQVSDWFNILVLHQNR 228 (627)
Q Consensus 158 ~~~~~~~i~~~Pi-ll~kg~~~valyGl~~i~derl~-------~~f~~~~~v~~l~p~~~~~-~~~~~~fnILv~Hq~~ 228 (627)
. .......+.|. +++.++.+|++.|+......... -.|.+ .++.+......- ......+-|++.|...
T Consensus 119 ~-~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~iI~l~H~g~ 195 (264)
T cd07411 119 D-DEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGI--REEELQEVVVKLRREEGVDVVVLLSHNGL 195 (264)
T ss_pred e-CCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECC--HHHHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence 0 00011123453 45788999999998654211100 00111 011111100000 0123568899999875
Q ss_pred CCCCCccccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 229 VKTNPKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 229 ~~~~~~~~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
... ..+.+. + .++|+|+.||.|.....|.. ...+..++|+|+
T Consensus 196 ~~~---~~la~~-~-~~iDlilgGH~H~~~~~~~~-~~~~t~v~~~g~ 237 (264)
T cd07411 196 PVD---VELAER-V-PGIDVILSGHTHERTPKPII-AGGGTLVVEAGS 237 (264)
T ss_pred hhh---HHHHhc-C-CCCcEEEeCcccccccCccc-ccCCEEEEEcCc
Confidence 321 112122 2 45999999999987554421 123467888876
No 50
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.80 E-value=2.4e-08 Score=96.49 Aligned_cols=77 Identities=26% Similarity=0.270 Sum_probs=47.6
Q ss_pred EEEcCCCCCCCCCc--hhchhcHHH-HHHHHHHHHHHc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccc
Q 006878 16 LVATDCHLGYMEKD--EIRRHDSFE-AFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 16 Lh~SD~HLG~~~~d--~~r~~Ds~~-tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~ 90 (627)
.++||+|||+...- +.+...... ..+.+++...+. ++|.|+++|||++...+... .+.|++
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-----~~~l~~--------- 67 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-----LELLSR--------- 67 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-----HHHHHh---------
Confidence 47899999985310 011111111 234455554443 79999999999998654321 344443
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
.+.|+++|+||||...
T Consensus 68 --------------------------~~~~~~~v~GNHD~~~ 83 (168)
T cd07390 68 --------------------------LNGRKHLIKGNHDSSL 83 (168)
T ss_pred --------------------------CCCCeEEEeCCCCchh
Confidence 2368999999999753
No 51
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.79 E-value=1.7e-07 Score=96.63 Aligned_cols=217 Identities=18% Similarity=0.246 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHH-HHHHHHHHHHhhcCCCccce
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~t-l~~~~~lLr~l~~g~~p~~~ 91 (627)
++|||++|+|-.....+. ..-.+..+..+++.++++..+++|.+||+|+....+... -...+++|+
T Consensus 1 i~il~~~D~H~~~~~~~~--~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln----------- 67 (257)
T cd07408 1 ITILHTNDIHGRIDEDDN--NGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMN----------- 67 (257)
T ss_pred CEEEEeccCcccccCCCC--ccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHH-----------
Confidence 689999999943322211 111245566667766665779999999999864322110 012223332
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEE-
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI- 170 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi- 170 (627)
..++-++ ..||||...+...+ ..++...++ -+++...... ..+.-.+.|.
T Consensus 68 ------------------------~~g~d~~-~~GNHefd~G~~~l--~~~~~~~~~-~~l~aNv~~~-~~~~~~~~py~ 118 (257)
T cd07408 68 ------------------------AVGYDAV-TPGNHEFDYGLDRL--KELSKEADF-PFLSANVYDN-DTGKRVFKPYK 118 (257)
T ss_pred ------------------------hcCCcEE-ccccccccCCHHHH--HHHHhhCCC-CEEEEEEEEc-CCCCcccCCEE
Confidence 2355565 46999976554322 234444432 1222111000 0011123453
Q ss_pred EEeeC-CeeEEEEecCCCCH------HHHH-hhhcChhHHhhcChh-hhhhhcCCCceEEEEEccCCCCCCCc-c--ccc
Q 006878 171 LIRKG-STAVALYGLGNIRD------ERLN-RMFQTPHAVQWMRPE-AQEECQVSDWFNILVLHQNRVKTNPK-N--AIN 238 (627)
Q Consensus 171 ll~kg-~~~valyGl~~i~d------erl~-~~f~~~~~v~~l~p~-~~~~~~~~~~fnILv~Hq~~~~~~~~-~--~i~ 238 (627)
++..+ +.+|++.|+-...- .... -.|.++ ++.++.. ..........+-|++.|.......+. . .+.
T Consensus 119 i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~~~~~~la 196 (257)
T cd07408 119 IKELGNGVKVGVIGLTTPETATKTHPKNVKDVTFEDP--IEEAKKVIVAALKAKGADVIVALGHLGVDRTSSPWTSTELA 196 (257)
T ss_pred EEEcCCCCEEEEEeecCcCcccccCccccCCcEEecH--HHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCCccHHHHH
Confidence 34566 89999999753210 0000 011111 1111111 00000123467899999986543111 0 111
Q ss_pred cccCCcCCCEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 239 EHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 239 e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
... .++|+|+.||.|.....+. ....+..++|+|+
T Consensus 197 -~~~-~giDvIigGH~H~~~~~~~-~~~~~~~ivq~g~ 231 (257)
T cd07408 197 -ANV-TGIDLIIDGHSHTTIEIGK-KDGNNVLLTQTGA 231 (257)
T ss_pred -HhC-CCceEEEeCCCcccccCcc-cccCCeEEEcCCh
Confidence 122 3699999999999765421 1123467888875
No 52
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.75 E-value=1.7e-07 Score=98.47 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCCCCCch---hchhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 006878 13 VRILVATDCHLGYMEKDE---IRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~---~r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~ 65 (627)
++|||++|+| |+..... ....-.+..+..+++..+++.++ ++|.+||+|...
T Consensus 1 i~il~tnD~H-g~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs 56 (288)
T cd07412 1 VQILAINDFH-GRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGAS 56 (288)
T ss_pred CeEEEEeccc-cCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccc
Confidence 5899999999 6543211 01111356778888888877775 889999999643
No 53
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.70 E-value=9.1e-08 Score=85.05 Aligned_cols=69 Identities=32% Similarity=0.495 Sum_probs=48.4
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeec
Q 006878 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVS 95 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~ls 95 (627)
++++|+|.+...... ... ...+.+.++|+||++||+++...+........ +..+
T Consensus 1 ~~~gD~h~~~~~~~~---------~~~-~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~---~~~~------------- 54 (131)
T cd00838 1 AVISDIHGNLEALEA---------VLE-AALAAAEKPDFVLVLGDLVGDGPDPEEVLAAA---LALL------------- 54 (131)
T ss_pred CeeecccCCccchHH---------HHH-HHHhcccCCCEEEECCcccCCCCCchHHHHHH---HHHh-------------
Confidence 579999999644211 000 45667799999999999999988765533222 1111
Q ss_pred hhhhhcccccCccccCCCCCCCCCcEEEEcCCCC
Q 006878 96 DQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHD 129 (627)
Q Consensus 96 d~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD 129 (627)
.+.++|++++.||||
T Consensus 55 -------------------~~~~~~~~~~~GNHD 69 (131)
T cd00838 55 -------------------LLLGIPVYVVPGNHD 69 (131)
T ss_pred -------------------hcCCCCEEEeCCCce
Confidence 256899999999999
No 54
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.68 E-value=4.8e-08 Score=93.62 Aligned_cols=86 Identities=23% Similarity=0.260 Sum_probs=50.3
Q ss_pred EEEcCCCCCCCCCchh-ch-hcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCh-HHHHHHHHHHHHhhcCCCcccee
Q 006878 16 LVATDCHLGYMEKDEI-RR-HDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR-STLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~~-r~-~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~-~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
+++||+||+....... .. ..-+...+.+...+.+.+||+|+++|||||...+.. ......+..+.+..
T Consensus 1 ~~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (156)
T cd08165 1 MFLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMF--------- 71 (156)
T ss_pred CccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHh---------
Confidence 4689999975433221 00 001112233444556789999999999999866533 22223333333321
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
. ...++|+++|+||||..
T Consensus 72 -------------~--------~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 72 -------------G--------HPPDLPLHVVVGNHDIG 89 (156)
T ss_pred -------------c--------cCCCCeEEEEcCCCCcC
Confidence 0 01368999999999974
No 55
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.64 E-value=4.2e-07 Score=95.14 Aligned_cols=199 Identities=17% Similarity=0.226 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCCCCCchh---------chhcHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCChHH-HHHHHHHHHH
Q 006878 13 VRILVATDCHLGYMEKDEI---------RRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRR 81 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~---------r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~t-l~~~~~lLr~ 81 (627)
++|||++|+|--....+.. ...-.+..+..+++.++++.++.|++ +||+|+.+..+... -...+++|+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln- 79 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMN- 79 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHH-
Confidence 5899999999543222111 01113666778888888888886555 99999875432110 011223332
Q ss_pred hhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCC
Q 006878 82 HCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSG 161 (627)
Q Consensus 82 l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~ 161 (627)
..++.+.++ ||||...+.+.+. +.++..+. .+++.-.....+
T Consensus 80 ----------------------------------~~g~D~~~l-GNHefd~G~~~l~--~~~~~~~~-p~l~aNv~~~~~ 121 (281)
T cd07409 80 ----------------------------------LLGYDAMTL-GNHEFDDGVEGLA--PFLNNLKF-PVLSANIDTSNE 121 (281)
T ss_pred ----------------------------------hcCCCEEEe-ccccccCCHHHHH--HHHHhCCC-CEEEEeeecCCC
Confidence 235566554 9999877655432 33443332 222221100000
Q ss_pred --ccceeEEE-EEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhh-----hhhh-cCCCceEEEEEccCCCCCC
Q 006878 162 --VGEITVYP-ILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEA-----QEEC-QVSDWFNILVLHQNRVKTN 232 (627)
Q Consensus 162 --~~~i~~~P-ill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~-----~~~~-~~~~~fnILv~Hq~~~~~~ 232 (627)
...-.+.| .++..++.+|++.|+-........... ..+.+..|.. .... .....+-|++.|......
T Consensus 122 ~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~---~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~d- 197 (281)
T cd07409 122 PPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPG---GKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEVD- 197 (281)
T ss_pred ccccccccCCeEEEEECCEEEEEEEEecCcccccccCC---CceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCchhH-
Confidence 00111345 455778999999998543211110000 0111211110 0000 012457789999975321
Q ss_pred CccccccccCCcCCCEEEcCCccccc
Q 006878 233 PKNAINEHFLPRFLDFVVWGHEHECL 258 (627)
Q Consensus 233 ~~~~i~e~~lp~~~DyVa~GH~H~~~ 258 (627)
..+.+. + .++|+|+.||.|...
T Consensus 198 --~~la~~-~-~giD~IiggH~H~~~ 219 (281)
T cd07409 198 --KEIARK-V-PGVDVIVGGHSHTFL 219 (281)
T ss_pred --HHHHHc-C-CCCcEEEeCCcCccc
Confidence 112222 2 469999999999975
No 56
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.56 E-value=1.3e-07 Score=92.03 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=55.2
Q ss_pred EEEcCCCCCCCCCch---------hchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChH-HHHHHHHHHHHhhcC
Q 006878 16 LVATDCHLGYMEKDE---------IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRS-TLVKAIEILRRHCLN 85 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~---------~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~-tl~~~~~lLr~l~~g 85 (627)
|++||.||+....-+ .+.......++.+-..+.+.+||+|+++|||||...+... ......+.+++..
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~-- 78 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIF-- 78 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHh--
Confidence 468999999765321 2222223334444455568899999999999999876543 3333444444431
Q ss_pred CCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 86 ~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
...+ ....++|+++|+||||..
T Consensus 79 --------------------~~~~----~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 79 --------------------FLPS----NGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred --------------------cccc----cccCCceEEEECCccccC
Confidence 0000 001368999999999974
No 57
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=98.54 E-value=7.9e-07 Score=93.62 Aligned_cols=97 Identities=20% Similarity=0.372 Sum_probs=60.5
Q ss_pred CCCCCceEEEEEcCCCCCCCCC----chhchh-c---HHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHH
Q 006878 7 EDIANTVRILVATDCHLGYMEK----DEIRRH-D---SFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEI 78 (627)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~----d~~r~~-D---s~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~l 78 (627)
..+.+++|||.+||.|+|.... |..-.+ + -.+|-..+=+....++||+||++||+..... ...+ ...
T Consensus 48 ~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~-t~Da----~~s 122 (379)
T KOG1432|consen 48 FREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHS-TQDA----ATS 122 (379)
T ss_pred ecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccc-cHhH----HHH
Confidence 3467889999999999998621 211111 1 1233333444456799999999999987732 2221 122
Q ss_pred HHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCc
Q 006878 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN 136 (627)
Q Consensus 79 Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ 136 (627)
|.+. ++ |-+..+||..++-||||+.+....
T Consensus 123 l~kA----------------------va------P~I~~~IPwA~~lGNHDdes~ltr 152 (379)
T KOG1432|consen 123 LMKA----------------------VA------PAIDRKIPWAAVLGNHDDESDLTR 152 (379)
T ss_pred HHHH----------------------hh------hHhhcCCCeEEEecccccccccCH
Confidence 2221 00 234679999999999999875443
No 58
>PLN02533 probable purple acid phosphatase
Probab=98.51 E-value=1.1e-06 Score=97.29 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=49.2
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcc
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~ 89 (627)
...+||++++|+|.+. .. ...++.+.+.++||||++|||.....- ......+++++..+
T Consensus 137 ~~~~~f~v~GDlG~~~--~~-----------~~tl~~i~~~~pD~vl~~GDl~y~~~~-~~~wd~f~~~i~~l------- 195 (427)
T PLN02533 137 KFPIKFAVSGDLGTSE--WT-----------KSTLEHVSKWDYDVFILPGDLSYANFY-QPLWDTFGRLVQPL------- 195 (427)
T ss_pred CCCeEEEEEEeCCCCc--cc-----------HHHHHHHHhcCCCEEEEcCccccccch-HHHHHHHHHHhhhH-------
Confidence 3579999999987532 11 234455567899999999999875421 11112233333332
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
...+|+++++||||..
T Consensus 196 --------------------------~s~~P~m~~~GNHE~~ 211 (427)
T PLN02533 196 --------------------------ASQRPWMVTHGNHELE 211 (427)
T ss_pred --------------------------hhcCceEEeCcccccc
Confidence 2458999999999975
No 59
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=98.50 E-value=1.1e-05 Score=87.98 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=58.8
Q ss_pred CceEEEEEccCCCCCC---CccccccccCC----cCCCEEEcCCccccccCCeecCCCCceEecCCCc--cc--------
Q 006878 217 DWFNILVLHQNRVKTN---PKNAINEHFLP----RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS--VA-------- 279 (627)
Q Consensus 217 ~~fnILv~Hq~~~~~~---~~~~i~e~~lp----~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~--v~-------- 279 (627)
..+.|++.|.++...+ +...+...++| ..+|++++||.|.-+.. ...+...+-+|+- ..
T Consensus 213 a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~VdlYisGHDH~lq~i----~~~gt~yIvSGaGs~~~~~~~~~~~ 288 (394)
T PTZ00422 213 ADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQVDLYISGYDRNMEVL----TDEGTAHINCGSGGNSGRKSIMKNS 288 (394)
T ss_pred CCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccccceEEe----cCCCceEEEeCccccccCCCCCCCC
Confidence 3479999999987533 22222222222 57999999999987543 2222333333331 11
Q ss_pred -cccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEe
Q 006878 280 -TSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIIL 322 (627)
Q Consensus 280 -ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L 322 (627)
.-| .....|+..+++.++.+.++++.-..-+.+....+.+
T Consensus 289 ~s~F---~~~~~GF~~~~l~~~~l~~~fid~~~GkvL~~~~~~~ 329 (394)
T PTZ00422 289 KSLF---YSEDIGFCIHELNAEGMVTKFVSGNTGEVLYTHKQPL 329 (394)
T ss_pred Ccce---ecCCCCEEEEEEecCEEEEEEEeCCCCcEEEEeeecc
Confidence 112 1245789999999999999998633345455444433
No 60
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.50 E-value=3.5e-07 Score=84.86 Aligned_cols=33 Identities=33% Similarity=0.316 Sum_probs=23.1
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 006878 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF 62 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLF 62 (627)
+++||+| |.. ..++++.. ...++|+|+++||+.
T Consensus 1 ~viSDtH-~~~-----------~~~~~~~~--~~~~~d~ii~~GD~~ 33 (129)
T cd07403 1 LVISDTE-SPA-----------LYSPEIKV--RLEGVDLILSAGDLP 33 (129)
T ss_pred Ceecccc-Ccc-----------ccchHHHh--hCCCCCEEEECCCCC
Confidence 5799999 532 12344443 268999999999973
No 61
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.1e-06 Score=87.89 Aligned_cols=245 Identities=22% Similarity=0.351 Sum_probs=123.5
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHH---HHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhc
Q 006878 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEA---FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCL 84 (627)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~t---Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~ 84 (627)
.+...++||++.||=.-- +|+. -.++-+++.+.++||||-.||=|=.+.+...
T Consensus 39 ~~dgslsflvvGDwGr~g----------~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~-------------- 94 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRRG----------SFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSE-------------- 94 (336)
T ss_pred CCCCceEEEEEcccccCC----------chhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCC--------------
Confidence 456789999999996321 1222 2345567889999999999996543332210
Q ss_pred CCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCc-chHHHHhhh--------------CCce
Q 006878 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN-LSAVDILSA--------------CNLV 149 (627)
Q Consensus 85 g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~-ls~ldiL~~--------------~glV 149 (627)
-| ..|+..|..+ |.+|-+. .|.|+|.||||+...... +++ +|.. +-+|
T Consensus 95 ----------~D--p~Fq~sF~nI-YT~pSLQ--kpWy~vlGNHDyrGnV~AQls~--~l~~~d~RW~c~rsf~~~ae~v 157 (336)
T KOG2679|consen 95 ----------ND--PRFQDSFENI-YTAPSLQ--KPWYSVLGNHDYRGNVEAQLSP--VLRKIDKRWICPRSFYVDAEIV 157 (336)
T ss_pred ----------CC--hhHHhhhhhc-ccCcccc--cchhhhccCccccCchhhhhhH--HHHhhccceecccHHhhcceee
Confidence 01 1244445544 5666554 499999999998643221 221 1221 1112
Q ss_pred eeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCC
Q 006878 150 NYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (627)
Q Consensus 150 n~fg~~~l~~~~~~~i~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~ 229 (627)
..|+... ..+....+.+..+ .+|-..-... |. .+.+ ..++|+.-...+ ....+.|.+.|.++.
T Consensus 158 e~f~v~~------~~f~~d~~~~~~~----~~ydw~~v~P-R~-~~~~--~~l~~le~~L~~---S~a~wkiVvGHh~i~ 220 (336)
T KOG2679|consen 158 EMFFVDT------TPFMDDTFTLCTD----DVYDWRGVLP-RV-KYLR--ALLSWLEVALKA---SRAKWKIVVGHHPIK 220 (336)
T ss_pred eeecccc------ccchhhheecccc----cccccccCCh-HH-HHHH--HHHHHHHHHHHH---hhcceEEEeccccee
Confidence 2222110 0000000111100 1111111111 11 1111 123444333221 245679999999875
Q ss_pred C---CCCccccccccCC----cCCCEEEcCCccccccCCeecCCCCceEecCCCccccc------cccCC----cCCCeE
Q 006878 230 K---TNPKNAINEHFLP----RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATS------LIEGE----SKPKHV 292 (627)
Q Consensus 230 ~---~~~~~~i~e~~lp----~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts------~~egE----~~~Kgv 292 (627)
. |+++.++...++| .++|+.+.||-|.-+-....-.+.++.+.=.||---.+ +...+ -..+|+
T Consensus 221 S~~~HG~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~e~~iqf~tSGagSkaw~g~~~~~~~~p~~lkF~YdgqGf 300 (336)
T KOG2679|consen 221 SAGHHGPTKELEKQLLPILEANGVDLYINGHDHCLQHISSPESGIQFVTSGAGSKAWRGTDHNPEVNPKELKFYYDGQGF 300 (336)
T ss_pred hhhccCChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCCCCCeeEEeeCCcccccCCCccCCccChhheEEeeCCCce
Confidence 4 6677666666665 68999999999975322100011112222223321111 11111 134588
Q ss_pred EEEEEeCCceEEEEEECC
Q 006878 293 LLLEIKENQYRPTKIPLT 310 (627)
Q Consensus 293 ~lveI~~~~~~~e~IpL~ 310 (627)
.-++|...+.++.++...
T Consensus 301 msv~is~~e~~vvfyD~~ 318 (336)
T KOG2679|consen 301 MSVEISHSEARVVFYDVS 318 (336)
T ss_pred EEEEEecceeEEEEEecc
Confidence 888888777777776553
No 62
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.44 E-value=9.2e-06 Score=85.30 Aligned_cols=201 Identities=18% Similarity=0.242 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc----CC-CEEEEcCCCCCCCCCChHHHH---HHHHHHHHhhc
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----EV-DFVLLGGDLFHENKPSRSTLV---KAIEILRRHCL 84 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~----~V-D~VLlaGDLFd~~~Ps~~tl~---~~~~lLr~l~~ 84 (627)
++|||++|+|--....+.. .-.+..+..+++.++++ ++ -++|-+||+|.....+ .+. -.+++|+
T Consensus 1 ltIl~tnD~Hg~l~~~~~~--~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~--~~~~g~~~~~~~n---- 72 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTG--EYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPES--DLQDAEPDFRGMN---- 72 (285)
T ss_pred CEEEEEcccccccccCCCC--CccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhH--HhcCcchHHHHHH----
Confidence 5899999999554332111 11244455555555543 33 4888999999653222 111 1122222
Q ss_pred CCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccc
Q 006878 85 NDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGE 164 (627)
Q Consensus 85 g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~ 164 (627)
..++-+.++ ||||--.+...+. .++..+++ .+++.-..... +.
T Consensus 73 -------------------------------~~g~Da~~~-GNHEfD~G~~~L~--~~~~~~~f-p~l~aNv~~~~--g~ 115 (285)
T cd07405 73 -------------------------------LVGYDAMAV-GNHEFDNPLEVLR--QQMKWANF-PLLSANIYQES--GE 115 (285)
T ss_pred -------------------------------hhCCcEEee-cccccccCHHHHH--HHHhhCCC-CEEEEEEEecC--CC
Confidence 234555555 9999877655432 22222222 11111100000 11
Q ss_pred eeEEE-EEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhh-----hhhc-CCCceEEEEEccCCCCCC-----
Q 006878 165 ITVYP-ILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQ-----EECQ-VSDWFNILVLHQNRVKTN----- 232 (627)
Q Consensus 165 i~~~P-ill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~-----~~~~-~~~~fnILv~Hq~~~~~~----- 232 (627)
-.+.| ++++.++.+|++.|+-......+...... ..+.|..|... .... ....+-|++.|.......
T Consensus 116 ~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~~~~-~~~~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~~~~ 194 (285)
T cd07405 116 RLFKPYALFDLGGLKIAVIGLTTDDTAKIGNPAYF-EGIEFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEHGSN 194 (285)
T ss_pred CccCCeEEEEECCEEEEEEEecccccccccCcCCc-CCcEEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCcccccc
Confidence 11345 34567889999999854321111000000 01111111000 0001 134578999999864321
Q ss_pred -Ccc-ccccccCCcCCCEEEcCCcccccc
Q 006878 233 -PKN-AINEHFLPRFLDFVVWGHEHECLI 259 (627)
Q Consensus 233 -~~~-~i~e~~lp~~~DyVa~GH~H~~~i 259 (627)
+.. .+...+...++|+|+.||.|....
T Consensus 195 ~~~~~~lA~~~~~~giD~IigGHsH~~~~ 223 (285)
T cd07405 195 APGDVEMARALPAGGLDLIVGGHSQDPVC 223 (285)
T ss_pred CchHHHHHHhcCCCCCCEEEeCCCCcccc
Confidence 000 111222235799999999999763
No 63
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.41 E-value=2.7e-06 Score=88.12 Aligned_cols=57 Identities=28% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHcCCCEEEEcCCCCCCCCCChHH-HHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcC
Q 006878 48 EQKEVDFVLLGGDLFHENKPSRST-LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHG 126 (627)
Q Consensus 48 ~~~~VD~VLlaGDLFd~~~Ps~~t-l~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~G 126 (627)
...+||+||++|||||..+..... .....+.+++. |.. ....+|+++|+|
T Consensus 42 ~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i----------------------~~~-------~~~~~pv~~VpG 92 (257)
T cd08163 42 KQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRI----------------------FDP-------SPGRKMVESLPG 92 (257)
T ss_pred HhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHH----------------------hcC-------CCccceEEEeCC
Confidence 346899999999999998764321 11222333332 111 123589999999
Q ss_pred CCCCCCC
Q 006878 127 NHDDPAG 133 (627)
Q Consensus 127 NHD~p~~ 133 (627)
|||.+.+
T Consensus 93 NHDig~~ 99 (257)
T cd08163 93 NHDIGFG 99 (257)
T ss_pred CcccCCC
Confidence 9998654
No 64
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.36 E-value=4.8e-06 Score=102.75 Aligned_cols=211 Identities=18% Similarity=0.201 Sum_probs=108.1
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCChHH-HHHHHHHHHHhhcCCC
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRST-LVKAIEILRRHCLNDR 87 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~t-l~~~~~lLr~l~~g~~ 87 (627)
...++|||++|+| |... .+..+..+++..+++++|.|++ +||+|+..-.+... ....+++|+.
T Consensus 658 ~~~l~Il~~nD~H-g~l~--------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~------ 722 (1163)
T PRK09419 658 NWELTILHTNDFH-GHLD--------GAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKE------ 722 (1163)
T ss_pred ceEEEEEEEeecc-cCCC--------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhC------
Confidence 3459999999999 5431 2455777888888889999988 99999876222100 0122333322
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCC------------ceeeccce
Q 006878 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN------------LVNYFGKM 155 (627)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~g------------lVn~fg~~ 155 (627)
.+ .-+++.||||...+...+ ...+...+ + -+++..
T Consensus 723 -----------------------------lg-~d~~~~GNHEfd~g~~~l--~~~l~~~~~~~~~~~~~~~~f-p~l~aN 769 (1163)
T PRK09419 723 -----------------------------MG-YDASTFGNHEFDWGPDVL--PDWLKGGGDPKNRHQFEKPDF-PFVASN 769 (1163)
T ss_pred -----------------------------cC-CCEEEecccccccChHHH--HHHHHhcccccccccccCCCC-CEEEEE
Confidence 12 235689999987665433 23444433 1 111110
Q ss_pred eecCCCccce-eEEE-EEEeeCCeeEEEEecCCCCH------HHH-HhhhcCh-hHHhhcChhhhhhhcCCCceEEEEEc
Q 006878 156 VLGGSGVGEI-TVYP-ILIRKGSTAVALYGLGNIRD------ERL-NRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLH 225 (627)
Q Consensus 156 ~l~~~~~~~i-~~~P-ill~kg~~~valyGl~~i~d------erl-~~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~H 225 (627)
.....+.... .+.| +++..++.+|++.|+-...- ... .-.|.++ ..++.+.++... ...-.+-|++.|
T Consensus 770 v~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~--~~~~D~VV~LsH 847 (1163)
T PRK09419 770 IYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKE--KEKVDAIIALTH 847 (1163)
T ss_pred EEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHh--hcCCCEEEEEec
Confidence 0000000111 1234 34467889999999843210 000 0012111 001111111100 012457799999
Q ss_pred cCCCCCCCc--c---ccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 226 QNRVKTNPK--N---AINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 226 q~~~~~~~~--~---~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
.....-... . .+. .-++ ++|+|+.||.|..... .+ .+..|+++|+
T Consensus 848 ~G~~~d~~~~~~~~~~lA-~~v~-gIDvIigGHsH~~~~~--~v--~~~~ivqag~ 897 (1163)
T PRK09419 848 LGSNQDRTTGEITGLELA-KKVK-GVDAIISAHTHTLVDK--VV--NGTPVVQAYK 897 (1163)
T ss_pred CCccccccccccHHHHHH-HhCC-CCCEEEeCCCCccccc--cC--CCEEEEeCCh
Confidence 976432100 0 111 1123 5999999999997542 22 2467888886
No 65
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.36 E-value=5.4e-06 Score=82.30 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=26.6
Q ss_pred HHHHHHHH-HHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHH
Q 006878 40 FEEICSIA-EQKEVDFVLLGGDLFHENKPSRSTLVKAIEILR 80 (627)
Q Consensus 40 Feeil~~A-~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr 80 (627)
+..+.+.+ .-.+||.|++.||||++..-+.+....-.+-++
T Consensus 32 L~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~ 73 (193)
T cd08164 32 LGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYR 73 (193)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHH
Confidence 34454544 346999999999999997765554333333333
No 66
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.33 E-value=1e-06 Score=89.40 Aligned_cols=57 Identities=32% Similarity=0.325 Sum_probs=39.7
Q ss_pred ceEEEEEcCCCCCCCCCchhchh-----cHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC
Q 006878 12 TVRILVATDCHLGYMEKDEIRRH-----DSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS 68 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~-----Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps 68 (627)
.-+.|++||+||||...-..++. +.-.+...+-.++..++|+.|++.||++|+-.++
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~ 80 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKS 80 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCcc
Confidence 35789999999999653211111 2223333344477899999999999999997775
No 67
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=98.23 E-value=3.6e-06 Score=88.27 Aligned_cols=65 Identities=22% Similarity=0.423 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCChHH-------HHHHHHHHHHhhcCCCccceeeechhhhhccccc
Q 006878 35 DSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRST-------LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKF 105 (627)
Q Consensus 35 Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~t-------l~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~ 105 (627)
-.+..++.+++.+++. ++||||++||+.++....... ...+.+.|+++
T Consensus 50 ~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~----------------------- 106 (296)
T cd00842 50 SPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKA----------------------- 106 (296)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHh-----------------------
Confidence 3478899999999988 999999999999886543221 12233333332
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 106 GHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 106 ~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
..++|||.+.||||...
T Consensus 107 ----------~~~~pv~~~~GNHD~~p 123 (296)
T cd00842 107 ----------FPDTPVYPALGNHDSYP 123 (296)
T ss_pred ----------CCCCCEEEcCCCCCCCc
Confidence 24689999999999854
No 68
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.17 E-value=0.00014 Score=82.49 Aligned_cols=235 Identities=19% Similarity=0.208 Sum_probs=117.7
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhch---hcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCChH--HHHHHHHHHHH
Q 006878 8 DIANTVRILVATDCHLGYMEKDEIRR---HDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRS--TLVKAIEILRR 81 (627)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~---~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~--tl~~~~~lLr~ 81 (627)
...-.++|||++|+|-.....+.... .-.+.....+++..+++.. -++|.+||+|+.+-++.. -....+++|+.
T Consensus 22 ~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~ 101 (517)
T COG0737 22 AETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNA 101 (517)
T ss_pred cCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhh
Confidence 44567999999999976542221111 1234444555566655554 678999999998655433 01123333332
Q ss_pred hhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCc----eeeccceee
Q 006878 82 HCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKMVL 157 (627)
Q Consensus 82 l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~gl----Vn~fg~~~l 157 (627)
+ +.- ++.-|||+-..+.+.+. ..+..... -|++...
T Consensus 102 m-----------------------------------~yD-a~tiGNHEFd~g~~~l~--~~~~~~~fp~l~aNv~~~~-- 141 (517)
T COG0737 102 L-----------------------------------GYD-AMTLGNHEFDYGLEALA--RLLDEAKFPVLSANVYDKN-- 141 (517)
T ss_pred c-----------------------------------CCc-EEeecccccccCHHHHH--HHHhccCCceEEeeeEecC--
Confidence 1 222 45667999877654332 22322221 1222210
Q ss_pred cCCCccceeEEEE-EEeeCCeeEEEEecC--CCCHHHHHh-----hhcCh-hHHhhcChhhhhhhcCC-CceEEEEEccC
Q 006878 158 GGSGVGEITVYPI-LIRKGSTAVALYGLG--NIRDERLNR-----MFQTP-HAVQWMRPEAQEECQVS-DWFNILVLHQN 227 (627)
Q Consensus 158 ~~~~~~~i~~~Pi-ll~kg~~~valyGl~--~i~derl~~-----~f~~~-~~v~~l~p~~~~~~~~~-~~fnILv~Hq~ 227 (627)
.....-+.|. ++..++.+|++.|+- .+..-.... .|.++ ..++...++.. .. -..-|++.|..
T Consensus 142 ---~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk----~~~vD~iI~LsH~G 214 (517)
T COG0737 142 ---STGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELK----GEGVDVIIALSHLG 214 (517)
T ss_pred ---CCCccCcCCeEEEecCCeEEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHH----hcCCCEEEEEeccC
Confidence 1111223453 457888999999975 322111111 12111 01111111111 11 35789999998
Q ss_pred CCCCCCc-ccccc--ccCCcCCCEEEcCCccccccCCeec-CCCCceEecCCCccccccccCCcCCCeEEEEEEeCC
Q 006878 228 RVKTNPK-NAINE--HFLPRFLDFVVWGHEHECLIDPQEV-PGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN 300 (627)
Q Consensus 228 ~~~~~~~-~~i~e--~~lp~~~DyVa~GH~H~~~i~pq~~-~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~ 300 (627)
...-... ...+. ......+|.++.||.|.-+..+... ...+..++|+|+ ..|.+..|+|.-+
T Consensus 215 ~~~d~~~~~~~~~~~~~~~~~iD~i~~GH~H~~~~~~~~~~~~~~t~ivqag~-----------~gk~vG~~di~~d 280 (517)
T COG0737 215 IEDDLELASEVPGDVDVAVPGIDLIIGGHSHTVFPGGDKPGTVNGTPIVQAGE-----------YGKYVGVLDITFD 280 (517)
T ss_pred cCccccccccccccccccccCcceEeccCCcccccCCcccCccCCEEEEccCh-----------hhCceeEEEEEEc
Confidence 7642110 00000 0111239999999999654332210 112356777764 3566777777643
No 69
>PHA02239 putative protein phosphatase
Probab=98.12 E-value=6.8e-06 Score=84.11 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=39.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCChHHHHHHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIE 77 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~ 77 (627)
|||+++||+|.. +..|+++++.+... ..|.|++.||+.|....+..++..+++
T Consensus 1 m~~~~IsDIHG~------------~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIHGE------------YQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD 55 (235)
T ss_pred CeEEEEECCCCC------------HHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH
Confidence 799999999942 45678888877543 369999999999988667655544444
No 70
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=5e-06 Score=84.33 Aligned_cols=79 Identities=27% Similarity=0.314 Sum_probs=51.0
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCC---CCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN---KPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~---~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
+.+||+|||..... .-..|.+.++.-. .+.|.|.+.|||||.- .+......++...|+++
T Consensus 1 lFISDlHL~~~~p~------~t~~fl~Fl~~~a-~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~---------- 63 (237)
T COG2908 1 LFISDLHLGPKRPA------LTAFFLDFLREEA-AQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL---------- 63 (237)
T ss_pred CeeeccccCCCCcH------HHHHHHHHHHhcc-ccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH----------
Confidence 47899999954432 1234444443222 2569999999999872 22233445555555554
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCC
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAG 133 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~ 133 (627)
...|.|||.||||||.-.+
T Consensus 64 ----------------------a~~G~~v~~i~GN~Dfll~ 82 (237)
T COG2908 64 ----------------------ARKGTRVYYIHGNHDFLLG 82 (237)
T ss_pred ----------------------HhcCCeEEEecCchHHHHH
Confidence 2568999999999996544
No 71
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.03 E-value=8.7e-05 Score=78.04 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=33.1
Q ss_pred CceEEEEEccCCCCCCCc----cccccccCCcCCC-EEEcCCccccccCCeecCCCCceEecCCC
Q 006878 217 DWFNILVLHQNRVKTNPK----NAINEHFLPRFLD-FVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 217 ~~fnILv~Hq~~~~~~~~----~~i~e~~lp~~~D-yVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
-.+-|++.|.....-... ..+. ..+|. +| +++.||.|..... .+. .+..++|||+
T Consensus 188 ~DvIIvlsH~G~~~d~~~~~~~~~la-~~~~~-id~~Ii~GHsH~~~~~--~~~-~~~~ivq~G~ 247 (282)
T cd07407 188 VDLILVLGHMPVRDDAEFKVLHDAIR-KIFPD-TPIQFLGGHSHVRDFT--QYD-SSSTGLESGR 247 (282)
T ss_pred CCEEEEEeCCCCCCCccHHHHHHHHH-HhCCC-CCEEEEeCCcccccce--ecc-CcEEEEeccc
Confidence 457899999987543110 1111 12344 56 7999999986432 222 2467888886
No 72
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.00 E-value=2.2e-05 Score=86.44 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=36.8
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHH--HHcCCCEEEEcCCCCCC
Q 006878 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIA--EQKEVDFVLLGGDLFHE 64 (627)
Q Consensus 6 ~~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A--~~~~VD~VLlaGDLFd~ 64 (627)
.....+.++.+++||+|.|..+. ..+.|..|-+-+..- ...+|-.+++|||+.|.
T Consensus 219 ~~~~~e~v~v~~isDih~GSk~F----~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDG 275 (481)
T COG1311 219 NNTGDERVYVALISDIHRGSKEF----LEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDG 275 (481)
T ss_pred CCCCCcceEEEEEeeeecccHHH----HHHHHHHHHHHhcCCcccccceEEEEEecccccc
Confidence 34456678999999999998764 233344443322211 34568899999999995
No 73
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.96 E-value=0.00034 Score=72.64 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-----------HcCCCEEEEcCCCCCCCC
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----------QKEVDFVLLGGDLFHENK 66 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-----------~~~VD~VLlaGDLFd~~~ 66 (627)
+|+++||+|+|...... ..|+.+++... ..++-.||+|||+++...
T Consensus 1 ~i~~vSgL~ig~~~~~~-------~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~ 57 (257)
T cd07387 1 YIALVSGLGLGGNAESS-------LSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKST 57 (257)
T ss_pred CEEEEcccccCCCccch-------HHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccc
Confidence 48899999999764321 23344444433 235668999999999653
No 74
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.95 E-value=3.5e-05 Score=76.73 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=39.0
Q ss_pred HHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEc
Q 006878 46 IAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIH 125 (627)
Q Consensus 46 ~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~ 125 (627)
.....+||+|+++|||||....+. -.+..+.++++. +-|. ...++|+++|+
T Consensus 37 a~~~l~PD~Vi~lGDL~D~G~~~~--~~e~~e~l~Rf~-------------------~If~--------~~~~~~~~~Vp 87 (195)
T cd08166 37 ALNFVQPDIVIFLGDLMDEGSIAN--DDEYYSYVQRFI-------------------NIFE--------VPNGTKIIYLP 87 (195)
T ss_pred HHhccCCCEEEEeccccCCCCCCC--HHHHHHHHHHHH-------------------HHhc--------CCCCCcEEEEC
Confidence 345569999999999999987543 234555555541 1111 13479999999
Q ss_pred CCCCCC
Q 006878 126 GNHDDP 131 (627)
Q Consensus 126 GNHD~p 131 (627)
||||-.
T Consensus 88 GNHDIG 93 (195)
T cd08166 88 GDNDIG 93 (195)
T ss_pred CCCCcC
Confidence 999964
No 75
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.94 E-value=0.00011 Score=84.04 Aligned_cols=207 Identities=18% Similarity=0.270 Sum_probs=99.8
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc----C-CCEEEEcCCCCCCCCCChHHHH---HHHH
Q 006878 6 REDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E-VDFVLLGGDLFHENKPSRSTLV---KAIE 77 (627)
Q Consensus 6 ~~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~----~-VD~VLlaGDLFd~~~Ps~~tl~---~~~~ 77 (627)
..+..-.+.|||++|+|--+...+. ..-.+..+..+++..+++ + --++|.+||.|... | ...+. -.++
T Consensus 28 ~~~~~~~ltil~tnD~Hg~~~~~~~--~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs-~-~s~~~~g~~~i~ 103 (551)
T PRK09558 28 EKDKTYKITILHTNDHHGHFWRNEY--GEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGV-P-ESDLQDAEPDFR 103 (551)
T ss_pred ccCCceEEEEEEecccCCCcccccc--CCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccce-E-hhhhcCCchhHH
Confidence 3445567999999999954432211 011355566666655532 3 35788899999864 2 11121 1122
Q ss_pred HHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceee
Q 006878 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL 157 (627)
Q Consensus 78 lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l 157 (627)
+|+ ..++-+.++ ||||--.|...+. .++..+.+ .++.....
T Consensus 104 ~mN-----------------------------------~~g~Da~tl-GNHEFD~G~~~L~--~~~~~a~f-p~l~aNv~ 144 (551)
T PRK09558 104 GMN-----------------------------------LIGYDAMAV-GNHEFDNPLSVLR--KQEKWAKF-PFLSANIY 144 (551)
T ss_pred HHh-----------------------------------cCCCCEEcc-cccccCcCHHHHH--HhhccCCC-CEEEEEEE
Confidence 222 234555554 9999877654332 22333322 11111100
Q ss_pred cCCCccceeEEEE-EEeeCCeeEEEEecCCCCHHHHH-------hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCC
Q 006878 158 GGSGVGEITVYPI-LIRKGSTAVALYGLGNIRDERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNR 228 (627)
Q Consensus 158 ~~~~~~~i~~~Pi-ll~kg~~~valyGl~~i~derl~-------~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~~ 228 (627)
.. ..+.-.+.|. +++.++.+|++.|+-......+. -.|.++ ..++.+.++... ...-.+-|++.|...
T Consensus 145 ~~-~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~--~~~~D~IV~LsH~G~ 221 (551)
T PRK09558 145 QK-STGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQ--TEKPDVIIALTHMGH 221 (551)
T ss_pred EC-CCCCcccCCeEEEEECCEEEEEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHh--ccCCCEEEEEecccc
Confidence 00 0011113453 34778899999998432111110 011111 001111111110 013457899999987
Q ss_pred CCCCC-ccccc-----cccCC-cCCCEEEcCCccccc
Q 006878 229 VKTNP-KNAIN-----EHFLP-RFLDFVVWGHEHECL 258 (627)
Q Consensus 229 ~~~~~-~~~i~-----e~~lp-~~~DyVa~GH~H~~~ 258 (627)
..... ....+ ..-++ .++|+|+.||.|...
T Consensus 222 ~~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 222 YDDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred ccCCccCCCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 43210 00011 11233 479999999999864
No 76
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.93 E-value=0.0002 Score=76.47 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc----C-CCEEEEcCCCCCCC
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E-VDFVLLGGDLFHEN 65 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~----~-VD~VLlaGDLFd~~ 65 (627)
++|||++|+|-.+.... .+..+..+++..+++ . --++|.+||+|...
T Consensus 1 l~IlhtnD~Hg~~~~~g------g~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs 52 (313)
T cd08162 1 LQLLHTSDGESGLLAED------DAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPG 52 (313)
T ss_pred CeEEEecccccCccccC------CHHHHHHHHHHHHHhhhccCCCeEEEecCccccCc
Confidence 57999999996543221 234444455554433 3 34889999999864
No 77
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.92 E-value=0.00025 Score=82.37 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCC
Q 006878 12 TVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~----~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~ 65 (627)
.++|||++|+|--...+|. ....-.+..+..+++.++++.. -++|-+||+|..+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGs 60 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGS 60 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 4899999999976544321 1111134556677777776543 4778899999875
No 78
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.89 E-value=0.00026 Score=87.67 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCC
Q 006878 11 NTVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHEN 65 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~----~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~ 65 (627)
..++|||++|+|-....++. ....-.+..+..+++.++++.++.||+ +||+|..+
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs 99 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGN 99 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCC
Confidence 46999999999966443321 001113566778888888888887777 99999875
No 79
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.89 E-value=0.00034 Score=82.78 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCC
Q 006878 10 ANTVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~----~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~ 65 (627)
.-.++|||++|+|--...+|. ....-.+..+..+++.++++.. -++|.+||+|..+
T Consensus 37 ~~~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGs 97 (780)
T PRK09418 37 TVNLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGT 97 (780)
T ss_pred ceEEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCc
Confidence 346999999999976443321 1111135556667777776654 4788899999864
No 80
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.88 E-value=0.00014 Score=83.16 Aligned_cols=195 Identities=19% Similarity=0.186 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCCCCCCchh----c-----hhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCChHHHHH---HHHHH
Q 006878 13 VRILVATDCHLGYMEKDEI----R-----RHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLVK---AIEIL 79 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~----r-----~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~tl~~---~~~lL 79 (627)
++|||++|+|--....+.. . ..-.+..+..+++..+++.+ -++|.+||.|...-- ..+.+ .+++|
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~--~~~~~g~~~i~~~ 78 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLY--FTLFGGRADAALM 78 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccc--hhhcCCHHHHHHH
Confidence 5799999999443221110 0 01135667777777776555 477899999976421 11211 22222
Q ss_pred HHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCc----eeeccce
Q 006878 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKM 155 (627)
Q Consensus 80 r~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~gl----Vn~fg~~ 155 (627)
+. . -.-++..||||.-.+...+. .++..+++ .|++.+.
T Consensus 79 N~-----------------------------------~-g~Da~~lGNHEFd~G~~~l~--~~~~~~~fp~l~aNv~~~~ 120 (550)
T TIGR01530 79 NA-----------------------------------A-GFDFFTLGNHEFDAGNEGLK--EFLEPLEIPVLSANVIPDA 120 (550)
T ss_pred hc-----------------------------------c-CCCEEEeccccccCCHHHHH--HHHHhCCCCEEEEeeecCC
Confidence 21 1 12367889999876654432 33444332 1221110
Q ss_pred eecCCCccceeEEE-EEEeeCCeeEEEEecCCCCH--HHH----HhhhcChhHHhhcChhhhhhhc-CCCceEEEEEccC
Q 006878 156 VLGGSGVGEITVYP-ILIRKGSTAVALYGLGNIRD--ERL----NRMFQTPHAVQWMRPEAQEECQ-VSDWFNILVLHQN 227 (627)
Q Consensus 156 ~l~~~~~~~i~~~P-ill~kg~~~valyGl~~i~d--erl----~~~f~~~~~v~~l~p~~~~~~~-~~~~fnILv~Hq~ 227 (627)
..... -.+.| +++..++.+|++.|+-.... ..- .-.|.++ ++.++.... ... ..-.+-|++.|..
T Consensus 121 ---~~~~~-~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~--~~~~~~~v~-~Lk~~g~D~II~lsH~g 193 (550)
T TIGR01530 121 ---ASILH-GKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDE--IAAAQIAAN-ALKQQGINKIILLSHAG 193 (550)
T ss_pred ---Ccccc-cCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCH--HHHHHHHHH-HHHhCCCCEEEEEecCC
Confidence 00000 01244 34567889999999842110 000 0011111 111111000 000 1235679999986
Q ss_pred CCCCCCccccccccCCcCCCEEEcCCcccccc
Q 006878 228 RVKTNPKNAINEHFLPRFLDFVVWGHEHECLI 259 (627)
Q Consensus 228 ~~~~~~~~~i~e~~lp~~~DyVa~GH~H~~~i 259 (627)
... ...+. .-++ ++|+|+.||.|..+.
T Consensus 194 ~~~---d~~la-~~~~-~iD~IigGHsH~~~~ 220 (550)
T TIGR01530 194 FEK---NCEIA-QKIN-DIDVIVSGDSHYLLG 220 (550)
T ss_pred cHH---HHHHH-hcCC-CCCEEEeCCCCcccc
Confidence 432 01121 1223 599999999999653
No 81
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.87 E-value=0.00079 Score=79.96 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCCCCCCchh--c--hhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 006878 12 TVRILVATDCHLGYMEKDEI--R--RHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~--r--~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~ 65 (627)
.++|||++|+|--...+|.. + ..-.+..+..+++.++++.+. ++|.+||+|..+
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGS 173 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGT 173 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCC
Confidence 59999999999664433210 1 111345566677777766553 788899999875
No 82
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.86 E-value=2.8e-05 Score=81.46 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
|++++++|+|-. +.+|+.+++.+. ..++|.++++||+++...-|. .++++|+++
T Consensus 1 M~~~vIGDIHG~------------~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~----~vl~~l~~l--------- 55 (275)
T PRK00166 1 MATYAIGDIQGC------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSL----EVLRFVKSL--------- 55 (275)
T ss_pred CcEEEEEccCCC------------HHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHH----HHHHHHHhc---------
Confidence 789999999955 567888888764 357999999999999874444 355555542
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
+.++++|.||||..
T Consensus 56 --------------------------~~~~~~VlGNHD~~ 69 (275)
T PRK00166 56 --------------------------GDSAVTVLGNHDLH 69 (275)
T ss_pred --------------------------CCCeEEEecChhHH
Confidence 34789999999973
No 83
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.86 E-value=7.9e-05 Score=81.21 Aligned_cols=99 Identities=23% Similarity=0.308 Sum_probs=64.6
Q ss_pred CCCCCCCceEEEEEcCCCCCCCCCch-------hchhcHHHHHHHHHHHHH-HcCCCEEEEcCCCCCC-CCCChHHHHHH
Q 006878 5 PREDIANTVRILVATDCHLGYMEKDE-------IRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHE-NKPSRSTLVKA 75 (627)
Q Consensus 5 ~~~~~~~~mKILh~SD~HLG~~~~d~-------~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~-~~Ps~~tl~~~ 75 (627)
|.++.++.+||+.+||.||==...++ .-..|.+ +....+.+. -.+||.+++.|||||+ ..-..+...+-
T Consensus 41 ~~~~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~--lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~ 118 (410)
T KOG3662|consen 41 QWASNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWY--LRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKR 118 (410)
T ss_pred cccCCCCceEEEEecCchhcCCCCCccccchHHhhhhHHH--HHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHH
Confidence 44555789999999999983211111 1112222 445555554 4799999999999995 44555655555
Q ss_pred HHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCC
Q 006878 76 IEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVD 135 (627)
Q Consensus 76 ~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~ 135 (627)
.+-|++. |+ .+-.+|++.|+||||-..+..
T Consensus 119 ~~RfkkI----------------------f~--------~k~~~~~~~i~GNhDIGf~~~ 148 (410)
T KOG3662|consen 119 YERFKKI----------------------FG--------RKGNIKVIYIAGNHDIGFGNE 148 (410)
T ss_pred HHHHHHh----------------------hC--------CCCCCeeEEeCCccccccccc
Confidence 5556654 11 134799999999999876643
No 84
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.85 E-value=3.2e-05 Score=77.65 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=51.5
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH--------HcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 006878 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE--------QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~--------~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~ 87 (627)
++++|+|-. +.+|+++++.+. ..+.|.+++.||++|...-+.++ +++|.++..
T Consensus 1 ~vi~DIHG~------------~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~v----l~~l~~l~~--- 61 (208)
T cd07425 1 VAIGDLHGD------------LDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEI----LWLLYKLEQ--- 61 (208)
T ss_pred CEEeCccCC------------HHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHH----HHHHHHHHH---
Confidence 368999976 578999998764 45799999999999987555544 444444310
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
. . ...+.+|++|.||||..
T Consensus 62 ---------~-------~---------~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 62 ---------E-------A---------AKAGGKVHFLLGNHELM 80 (208)
T ss_pred ---------H-------H---------HhcCCeEEEeeCCCcHH
Confidence 0 0 13467899999999964
No 85
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.84 E-value=0.00043 Score=80.70 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=36.9
Q ss_pred CCceEEEEEcCCCCCCCCCch----hchhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCC
Q 006878 10 ANTVRILVATDCHLGYMEKDE----IRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHEN 65 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~----~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~ 65 (627)
.-.++|||++|+|--...++. ....-.+..+..+++.++++.+ -++|-+||+|..+
T Consensus 23 ~~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGs 83 (649)
T PRK09420 23 TVDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGS 83 (649)
T ss_pred CceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCc
Confidence 457999999999965443321 1111134556677777776654 4778899999865
No 86
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.81 E-value=0.00031 Score=73.11 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.3
Q ss_pred CCCCcEEEEcCCCCCCC
Q 006878 116 NVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 116 ~~~iPVf~I~GNHD~p~ 132 (627)
.+.+|+++|.||||.+.
T Consensus 71 ~~p~~t~fi~GNHE~~~ 87 (262)
T cd00844 71 KAPILTIFIGGNHEASN 87 (262)
T ss_pred cCCeeEEEECCCCCCHH
Confidence 46789999999999753
No 87
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.71 E-value=0.00051 Score=65.59 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=39.3
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHH--HHHcCC-CEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSI--AEQKEV-DFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~--A~~~~V-D~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
+|..|-++||+|+|...--..+..+-+.-+++++=. -+--+| |.|.+.|||--..+... .+..++.++
T Consensus 2 sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~----~a~~IlerL 72 (186)
T COG4186 2 SMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRER----AAGLILERL 72 (186)
T ss_pred ceeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhh----HHHHHHHHc
Confidence 466789999999997642222233334445554411 122233 89999999976654322 344556553
No 88
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.66 E-value=7.2e-05 Score=74.68 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCC
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPS 68 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~-~~VD~VLlaGDLFd~~~Ps 68 (627)
.||+++||+| |. +.+|+.+++.+.. .++|.|+++||+.+....+
T Consensus 1 ~ri~~isDiH-g~-----------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~ 45 (207)
T cd07424 1 GRDFVVGDIH-GH-----------YSLLQKALDAVGFDPARDRLISVGDLIDRGPES 45 (207)
T ss_pred CCEEEEECCC-CC-----------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH
Confidence 3799999999 42 4678888887753 4799999999999876433
No 89
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.64 E-value=9e-05 Score=75.49 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH----H------cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE----Q------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~----~------~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
|||++++|+|-. +.+|+.+++.+. + .+.|.+++.|||+|...-|.+ ++++|+.+
T Consensus 1 ~~i~vigDIHG~------------~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~e----vl~~l~~l 64 (234)
T cd07423 1 GPFDIIGDVHGC------------YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPE----VLRLVMSM 64 (234)
T ss_pred CCeEEEEECCCC------------HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHH----HHHHHHHH
Confidence 699999999965 567888888762 1 147999999999998755554 44555543
No 90
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.47 E-value=0.00019 Score=71.81 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=50.7
Q ss_pred EEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeech
Q 006878 17 VATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSD 96 (627)
Q Consensus 17 h~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd 96 (627)
+++|+|-. +..|..+++.+.....|.+++.||++|...++.+ +++.+..+.
T Consensus 2 ~igDiHg~------------~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~----~l~~l~~~~------------- 52 (225)
T cd00144 2 VIGDIHGC------------LDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVE----VIDLLLALK------------- 52 (225)
T ss_pred EEeCCCCC------------HHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHH----HHHHHHHhc-------------
Confidence 68999943 4678888888877789999999999999877765 444444431
Q ss_pred hhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 97 QAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 97 ~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
.. ..+|++|.||||..
T Consensus 53 ------------------~~-~~~~~~l~GNHe~~ 68 (225)
T cd00144 53 ------------------IL-PDNVILLRGNHEDM 68 (225)
T ss_pred ------------------CC-CCcEEEEccCchhh
Confidence 01 45799999999975
No 91
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.31 E-value=0.00041 Score=72.10 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=50.0
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceee
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQV 93 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~-~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~ 93 (627)
+.+++|+|-. +.+|+.+++.+.- .+.|.++++||+++...-|.+ ++++|+++
T Consensus 1 ~yvIGDIHG~------------~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~e----vl~~l~~l----------- 53 (257)
T cd07422 1 TYAIGDIQGC------------YDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLE----TLRFVKSL----------- 53 (257)
T ss_pred CEEEECCCCC------------HHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHH----HHHHHHhc-----------
Confidence 3679999965 5678999888753 478999999999998755543 55566543
Q ss_pred echhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 94 VSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 94 lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
+..+++|.||||..
T Consensus 54 ------------------------~~~v~~VlGNHD~~ 67 (257)
T cd07422 54 ------------------------GDSAKTVLGNHDLH 67 (257)
T ss_pred ------------------------CCCeEEEcCCchHH
Confidence 24688999999974
No 92
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.30 E-value=0.00033 Score=70.70 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=40.6
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCChHHHHHHHHHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVKAIEILR 80 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr 80 (627)
.||.+++|+|-. +.+|+++++.+... +.|.|++.||+.|...-|.+ ++++|+
T Consensus 17 ~ri~vigDIHG~------------~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~----vl~~l~ 69 (218)
T PRK11439 17 RHIWLVGDIHGC------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR----CLQLLE 69 (218)
T ss_pred CeEEEEEcccCC------------HHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHH----HHHHHH
Confidence 599999999976 57788998887644 78999999999998755544 445554
No 93
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.27 E-value=0.00045 Score=69.86 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=35.9
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCCh
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSR 69 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~ 69 (627)
||+++||+|-. +.+|+++++.+. ..++|.|++.||+.+...-+.
T Consensus 16 ri~visDiHg~------------~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~ 60 (218)
T PRK09968 16 HIWVVGDIHGE------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPESL 60 (218)
T ss_pred eEEEEEeccCC------------HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHH
Confidence 89999999954 567888887765 468999999999999874443
No 94
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.24 E-value=0.00053 Score=70.53 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc---------CCCEEEEcCCCCCCCCCChHHHHHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK---------EVDFVLLGGDLFHENKPSRSTLVKAI 76 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~---------~VD~VLlaGDLFd~~~Ps~~tl~~~~ 76 (627)
||+.+++|+|-- +..|+++++.+.-. .-|.+++.|||.|...-|..++..++
T Consensus 1 ~~~~vIGDIHG~------------~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~ 61 (245)
T PRK13625 1 MKYDIIGDIHGC------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVW 61 (245)
T ss_pred CceEEEEECccC------------HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHH
Confidence 789999999943 56688888765321 34799999999998866666544433
No 95
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=97.11 E-value=0.0097 Score=66.63 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=60.3
Q ss_pred hHHhhcChhhhhhhcCCCceEEEEEccCCCCCCC--cc-------ccc-c---ccCCc--CCCEEEcCCccccccCCee-
Q 006878 200 HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP--KN-------AIN-E---HFLPR--FLDFVVWGHEHECLIDPQE- 263 (627)
Q Consensus 200 ~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~--~~-------~i~-e---~~lp~--~~DyVa~GH~H~~~i~pq~- 263 (627)
..++|++..... ..+...|+++|++...... .+ ... + +++.. .+-+|++||.|...+.+..
T Consensus 323 eQL~WLeqeLa~---a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~n~~eLldLL~~ypnV~aVfsGHvH~n~i~~~~~ 399 (496)
T TIGR03767 323 TQFKWIKDTLRA---SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHPNVLAWVNGHTHSNKITAHRR 399 (496)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEECCCCccccccccccccccccccCHHHHHHHHhcCCCceEEEECCcCCCccccccC
Confidence 356777654332 2345689999997543211 00 000 1 22222 5788999999987654321
Q ss_pred ----cCCCCceEecCCCccccccccCCcCCCeEEEEEEeCC---ceEEEEEECCCCCcE
Q 006878 264 ----VPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN---QYRPTKIPLTSVRPF 315 (627)
Q Consensus 264 ----~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~---~~~~e~IpL~tvRpf 315 (627)
.++.+++-+..+|.+ ..|..+-++||..+ .+.+.-.-+.+.-|.
T Consensus 400 ~~~~~p~~gfweI~TaSlv--------dfPq~~Ri~Ei~~n~dgt~si~tt~vd~~~~~ 450 (496)
T TIGR03767 400 VEGVGKDKGFWEINTASHI--------DFPQQGRIIELADNQDGTVSIFTTLIESAAPY 450 (496)
T ss_pred CCCCCCcCCeEEEeccccc--------cCCCCceEEEEEeCCCCcEEEEEEecccCCCc
Confidence 023467777877754 34777888888543 456555555555544
No 96
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=96.99 E-value=0.0037 Score=61.14 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=26.6
Q ss_pred CceEEEEEccCCCC-CCCccccccccCCcCCCEEEcCCcccc
Q 006878 217 DWFNILVLHQNRVK-TNPKNAINEHFLPRFLDFVVWGHEHEC 257 (627)
Q Consensus 217 ~~fnILv~Hq~~~~-~~~~~~i~e~~lp~~~DyVa~GH~H~~ 257 (627)
..--|+|+|.+... .++...+.+-+-...++.++.||+|+.
T Consensus 158 ~~~fivM~HYPP~s~~~t~~~~sevlee~rv~~~lyGHlHgv 199 (230)
T COG1768 158 VSKFIVMTHYPPFSDDGTPGPFSEVLEEGRVSKCLYGHLHGV 199 (230)
T ss_pred cCeEEEEEecCCCCCCCCCcchHHHHhhcceeeEEeeeccCC
Confidence 34468999987543 233334443233455899999999995
No 97
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.97 E-value=0.0015 Score=68.56 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
|++.+++|+|-- +.+|+++++.+. ..+.|.+++.|||++...-|.+ +++++++
T Consensus 1 m~~YvIGDIHGc------------~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sle----vL~~l~~ 54 (279)
T TIGR00668 1 MATYLIGDLHGC------------YDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE----VLRYVKS 54 (279)
T ss_pred CcEEEEEcccCC------------HHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHH----HHHHHHh
Confidence 678999999965 567899998886 4478999999999998755554 4445544
No 98
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.009 Score=66.13 Aligned_cols=79 Identities=16% Similarity=-0.049 Sum_probs=47.9
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCc
Q 006878 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p 88 (627)
+....++.++.|+=..+.... +...... ..++|+|||.|||-....-....-..+++.++-+
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s----------~~~~~~~--~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~------ 205 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTS----------TLRNQEE--NLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPI------ 205 (452)
T ss_pred ccCceeEEEEccccccccccc----------hHhHHhc--ccCCcEEEEecchhhcCCCCccchHHHHhhhhhh------
Confidence 447789999999766544321 1222211 1279999999999644332212223344444332
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
..-+|..++.|||+.-.
T Consensus 206 ---------------------------As~vPymv~~GNHE~d~ 222 (452)
T KOG1378|consen 206 ---------------------------ASYVPYMVCSGNHEIDW 222 (452)
T ss_pred ---------------------------hccCceEEecccccccC
Confidence 35689999999999754
No 99
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.83 E-value=0.052 Score=56.50 Aligned_cols=190 Identities=21% Similarity=0.200 Sum_probs=100.8
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
|||++.|+= |... ..++.+.+...+ ++++|+++..||.+-...+... ...+.|.
T Consensus 1 ~ilfigdi~-g~~G---------~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~---~~~~~L~------------ 55 (255)
T cd07382 1 KILFIGDIV-GKPG---------RKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITP---KIAKELL------------ 55 (255)
T ss_pred CEEEEEeCC-CHHH---------HHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCH---HHHHHHH------------
Confidence 577777774 4322 345556565554 5689999999999876643322 3344444
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCc----eeeccceeecCCCccceeEE
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL----VNYFGKMVLGGSGVGEITVY 168 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~gl----Vn~fg~~~l~~~~~~~i~~~ 168 (627)
..++-++.+ |||....+ +. +..|..... .||.... ..+
T Consensus 56 -----------------------~~G~D~iTl-GNH~fD~g-el---~~~l~~~~~~l~~aN~~~~~----------pg~ 97 (255)
T cd07382 56 -----------------------SAGVDVITM-GNHTWDKK-EI---LDFIDEEPRLLRPANYPPGT----------PGR 97 (255)
T ss_pred -----------------------hcCCCEEEe-cccccCcc-hH---HHHHhcCcCceEeeecCCCC----------CCC
Confidence 346677777 99987765 21 233333211 1221100 011
Q ss_pred E-EEEeeCCeeEEEEecCCCCHHHHHhhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcCC
Q 006878 169 P-ILIRKGSTAVALYGLGNIRDERLNRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFL 246 (627)
Q Consensus 169 P-ill~kg~~~valyGl~~i~derl~~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~~ 246 (627)
| ..+..++.+|++.|+--... +. .+.++ ..++..-++. .....+-|+++|...... +..+ ...++..+
T Consensus 98 ~~~i~~~~G~kIaVigl~g~~~--~~-~~~~P~~~~~~~v~~l----k~~~D~IIV~~H~g~tsE--k~al-a~~ldg~V 167 (255)
T cd07382 98 GYGVVEVNGKKIAVINLMGRVF--MP-PLDNPFRAADELLEEL----KEEADIIFVDFHAEATSE--KIAL-GWYLDGRV 167 (255)
T ss_pred CeEEEEECCEEEEEEEEecccC--CC-cCCCHHHHHHHHHHHH----hcCCCEEEEEECCCCCHH--HHHH-HHhCCCCc
Confidence 2 23456788999988741100 00 11111 0111111111 112457899999864210 1011 13556669
Q ss_pred CEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 247 DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
|.|+-||.|....+.+-+++...++...|-
T Consensus 168 dvIvGtHTHv~t~d~~il~~gTa~itd~Gm 197 (255)
T cd07382 168 SAVVGTHTHVQTADERILPGGTAYITDVGM 197 (255)
T ss_pred eEEEeCCCCccCCccEEeeCCeEEEecCcc
Confidence 999999999987765545443335555543
No 100
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.74 E-value=0.0024 Score=64.75 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=36.8
Q ss_pred EEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc--------CCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 16 LVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--------EVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 16 Lh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--------~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
.+++|+|-- +.+|+++++.+... ..|.|++.||+.|...-|..+ +++|.++
T Consensus 2 ~vIGDIHG~------------~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~v----l~~l~~l 60 (222)
T cd07413 2 DFIGDIHGH------------AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIREL----LEIVKSM 60 (222)
T ss_pred EEEEeccCC------------HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHH----HHHHHHh
Confidence 478999954 56788888776332 468999999999998666654 4555443
No 101
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.74 E-value=0.0046 Score=65.34 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHH------cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~------~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
++++++|+|-- +..|+++++.+.+ ...+.||+.||+.|...-|.. ++++|..
T Consensus 3 ~iyaIGDIHG~------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~e----Vld~L~~ 60 (304)
T cd07421 3 VVICVGDIHGY------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRK----VIDFLIS 60 (304)
T ss_pred eEEEEEeccCC------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHH----HHHHHHH
Confidence 68999999954 4567777765432 246789999999998855554 4555544
No 102
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.005 Score=58.39 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=53.4
Q ss_pred CceEEEEEccCCC-CCCCccccccccCC--cCCCEEEcCCccccccCCeecCCCCceEecCCCcc-ccccccCCcCCCeE
Q 006878 217 DWFNILVLHQNRV-KTNPKNAINEHFLP--RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV-ATSLIEGESKPKHV 292 (627)
Q Consensus 217 ~~fnILv~Hq~~~-~~~~~~~i~e~~lp--~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v-~ts~~egE~~~Kgv 292 (627)
+.|+|.+.|+... +.+.. ....+|. -.+|..+|||+|++.. .+. .+...++|||.- +.+.++.+.....|
T Consensus 78 GqfkIG~chGhqViP~gd~--~sL~~LaRqldvDILl~G~Th~f~A--ye~--eg~ffvnPGSaTGAfn~~~t~~~~PSF 151 (183)
T KOG3325|consen 78 GQFKIGLCHGHQVIPWGDP--ESLALLARQLDVDILLTGHTHKFEA--YEH--EGKFFVNPGSATGAFNVSDTDIIVPSF 151 (183)
T ss_pred ccEEEEeecCcEeecCCCH--HHHHHHHHhcCCcEEEeCCceeEEE--EEe--CCcEEeCCCcccCCCcccccCCCCCce
Confidence 6699999997532 21111 1112332 3699999999999853 233 356789999975 46666555456789
Q ss_pred EEEEEeCCce
Q 006878 293 LLLEIKENQY 302 (627)
Q Consensus 293 ~lveI~~~~~ 302 (627)
.|++|.+..+
T Consensus 152 vLmDiqg~~~ 161 (183)
T KOG3325|consen 152 VLMDIQGSTV 161 (183)
T ss_pred EEEEecCCEE
Confidence 9999998754
No 103
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.29 E-value=0.0096 Score=62.36 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=41.2
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAI 76 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~ 76 (627)
.++.+++|+|-. +.++..+++.+.....+.+|+.||++|...++.+++...+
T Consensus 28 ~~i~vvGDiHG~------------~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~ 79 (271)
T smart00156 28 APVTVCGDIHGQ------------FDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLF 79 (271)
T ss_pred CCEEEEEeCcCC------------HHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHH
Confidence 579999999965 4567777776666678999999999999988887655443
No 104
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=96.25 E-value=0.08 Score=54.48 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCCCCCc-chHHHHhhhCCceeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCCHHHH-H
Q 006878 116 NVGLPVFSIHGNHDDPAGVDN-LSAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERL-N 193 (627)
Q Consensus 116 ~~~iPVf~I~GNHD~p~~~~~-ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pill~kg~~~valyGl~~i~derl-~ 193 (627)
..++-++.+..||-.-.+... ...++.|...|+ .++|.-. + ..-...|..+..++.+|++.|..+...... .
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi-~~~Gag~----~-~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~ 146 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGI-PYVGAGR----N-LEEARRPAIIEVNGVKIAFLGYTDGENGYSSA 146 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHHHCCC-cEeECcC----C-hHHhcCeEEEEECCEEEEEEEEEcCCCCCccc
Confidence 357889999999976665443 356778888885 4566311 0 111235788889999999998765431100 0
Q ss_pred hh-----hc----------ChhHHhhcChhhhhhhcCCCceEEEEEccCCCCC-CCcc---ccccccCCcCCCEEEcCCc
Q 006878 194 RM-----FQ----------TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHE 254 (627)
Q Consensus 194 ~~-----f~----------~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~-~~~~---~i~e~~lp~~~DyVa~GH~ 254 (627)
.. +. ....++.+..... .......+-|+++|...... .|.. .+-..++..++|+|+.+|-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~Hp 225 (250)
T PF09587_consen 147 NGNRPYGFSYRPDKAGLNPNRPGIERIKEDIR-EARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHP 225 (250)
T ss_pred cccccccccccccccccccccchHHHHHHHHH-HHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCC
Confidence 00 00 0000111111111 11124568999999975421 1111 1223456679999999999
Q ss_pred ccccc
Q 006878 255 HECLI 259 (627)
Q Consensus 255 H~~~i 259 (627)
|--+.
T Consensus 226 Hv~q~ 230 (250)
T PF09587_consen 226 HVIQP 230 (250)
T ss_pred Ccccc
Confidence 99653
No 105
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=96.08 E-value=0.024 Score=64.43 Aligned_cols=94 Identities=22% Similarity=0.324 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCCCCC--CC----------------------------chh-chhcHHHHHHHHHHHHHHcC--CCEEEE
Q 006878 11 NTVRILVATDCHLGYM--EK----------------------------DEI-RRHDSFEAFEEICSIAEQKE--VDFVLL 57 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~--~~----------------------------d~~-r~~Ds~~tFeeil~~A~~~~--VD~VLl 57 (627)
-++||||+||+|.... +. +.. ..+-.+.+++.+|+.+++.. +|+|+.
T Consensus 137 p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~w 216 (577)
T KOG3770|consen 137 PTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYIIW 216 (577)
T ss_pred CceeEEEeeccccCcccccCCcccccCccccccCCCCCCCccccCCCCCCcCCCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 5699999999999732 10 011 12334789999999887653 799999
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 58 GGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 58 aGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
+||+-.+.. -..+.....+.+.++. .-+..-| .++|||..-||||..
T Consensus 217 TGD~~~H~~-w~~t~~~~l~~~~~l~---------------~~~~e~F-----------pdvpvypalGNhe~~ 263 (577)
T KOG3770|consen 217 TGDNVAHDV-WAQTEEENLSMLSRLT---------------SLLSEYF-----------PDVPVYPALGNHEIH 263 (577)
T ss_pred eCCCCcccc-hhhhHHHHHHHHHHHH---------------HHHHHhC-----------CCCceeeecccCCCC
Confidence 999986652 2333333333444331 0011112 378999999999964
No 106
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.97 E-value=0.053 Score=55.26 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCCCCcc-hHHHHhhhCCceeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCCHHHHHh-
Q 006878 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLNR- 194 (627)
Q Consensus 117 ~~iPVf~I~GNHD~p~~~~~l-s~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pill~kg~~~valyGl~~i~derl~~- 194 (627)
.++-++.+.+||+.-.+...+ ..++.|..+|+. ++|.-. .... ...|..+..++.+|++.|+..........
T Consensus 76 ~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~-~~g~~~----~~~~-~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~ 149 (239)
T cd07381 76 AGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIA-HAGAGR----NLEE-ARRPAILEVNGIKVAFLAYTYGTNGIPLAA 149 (239)
T ss_pred hCCCEEEcccccccccchHHHHHHHHHHHHcCCc-eeECCC----CHHH-hcCcEEEEECCEEEEEEEEECCCCCCcCcc
Confidence 477888899999987776544 345566666653 344311 0000 12456677888999999985532110000
Q ss_pred ------hhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCC-CCcc---ccccccCCcCCCEEEcCCccccc
Q 006878 195 ------MFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT-NPKN---AINEHFLPRFLDFVVWGHEHECL 258 (627)
Q Consensus 195 ------~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~-~~~~---~i~e~~lp~~~DyVa~GH~H~~~ 258 (627)
.+.. .++.+..... .......+-|+++|...... .|.. .+-..++..++|+|+.||-|..+
T Consensus 150 ~~~~~~~~~~--~~~~~~~~i~-~lr~~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 150 GARPGGVNPL--DLERIAADIA-EAKKKADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred cCCccccCcc--CHHHHHHHHH-HHhhcCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 0000 0011111100 01112568999999876432 1111 11123445689999999999864
No 107
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=95.93 E-value=0.0073 Score=60.06 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCC
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPS 68 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps 68 (627)
|+++||.|++... ..++.|++++..+. +.+|+.+|++|++.+...+.
T Consensus 1 Iv~~Sg~~~~~~~-------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~ 48 (209)
T PF04042_consen 1 IVFASGPFLDSDN-------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPY 48 (209)
T ss_dssp EEEEES--CTTT--------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHH
T ss_pred CEEEecCccCCCH-------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccc
Confidence 7899999999432 13777888888777 88999999999999976544
No 108
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=95.89 E-value=0.14 Score=53.74 Aligned_cols=188 Identities=16% Similarity=0.174 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-QKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
||||++.|+= |.. -...+.+.+..++ ++++|+++..||.+........ .+.+.|.
T Consensus 1 m~ilfiGDi~-G~~---------Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~---~~~~~L~----------- 56 (266)
T TIGR00282 1 IKFLFIGDVY-GKA---------GRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTL---KIYEFLK----------- 56 (266)
T ss_pred CeEEEEEecC-CHH---------HHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCH---HHHHHHH-----------
Confidence 8999999986 422 1356777777766 5579999999999976532222 2344443
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhC-Cce---eeccceeecCCCccceeE
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSAC-NLV---NYFGKMVLGGSGVGEITV 167 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~-glV---n~fg~~~l~~~~~~~i~~ 167 (627)
+.|+-|+.+ |||..-.+. .++.+... .++ ||-... .+. .
T Consensus 57 ------------------------~~GvDviT~-GNH~~Dkge----~~~~i~~~~~~lrpanyp~~~----pG~-g--- 99 (266)
T TIGR00282 57 ------------------------QSGVNYITM-GNHTWFQKL----ILDVVINQKDLVRPLNFDTSF----AGK-G--- 99 (266)
T ss_pred ------------------------hcCCCEEEc-cchhccCcH----HHHHHhccccccccCCCCCCC----CCC-C---
Confidence 357888888 899887653 11222211 111 221100 000 1
Q ss_pred EEEEEeeCCeeEEEEecC---CCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCc
Q 006878 168 YPILIRKGSTAVALYGLG---NIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR 244 (627)
Q Consensus 168 ~Pill~kg~~~valyGl~---~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~ 244 (627)
...+..++.+|++..+- ++..-.+...|. .++.+-++. .....+-|+.+|..... ....-..++..
T Consensus 100 -~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~---~~d~~i~~l----k~~~d~IIVd~Haeats---EK~a~~~~ldg 168 (266)
T TIGR00282 100 -SLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFK---VLKELINML----KKDCDLIFVDFHAETTS---EKNAFGMAFDG 168 (266)
T ss_pred -cEEEEECCEEEEEEECCCcccCCccccCCHHH---HHHHHHHhh----hcCCCEEEEEeCCCCHH---HHHHHHHHhCC
Confidence 12345667788877652 221100111111 122211111 11234789999986421 11111346778
Q ss_pred CCCEEEcCCccccccCCeecCCCCceEe
Q 006878 245 FLDFVVWGHEHECLIDPQEVPGMGFHLT 272 (627)
Q Consensus 245 ~~DyVa~GH~H~~~i~pq~~~~~~~~i~ 272 (627)
.+|.|+.-|.|-..-+.+-+++..-++.
T Consensus 169 ~vsaVvGtHtHV~TaD~~il~~gtayit 196 (266)
T TIGR00282 169 YVTAVVGTHTHVPTADLRILPKGTAYIT 196 (266)
T ss_pred CccEEEeCCCCCCCCcceeCCCCCEEEe
Confidence 8999999999997666444444333443
No 109
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.74 E-value=0.026 Score=60.18 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKA 75 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~ 75 (627)
-++.+++|+|-. +..+..+++.+.....|.+|+.||++|...++.+++...
T Consensus 43 ~~i~ViGDIHG~------------~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL 93 (305)
T cd07416 43 APVTVCGDIHGQ------------FYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYL 93 (305)
T ss_pred CCEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHHHH
Confidence 368999999965 456777777766666799999999999998888755443
No 110
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.55 E-value=0.1 Score=53.30 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCCCCcc-hHHHHhhhCCceeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCCHHHHH--
Q 006878 117 VGLPVFSIHGNHDDPAGVDNL-SAVDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLN-- 193 (627)
Q Consensus 117 ~~iPVf~I~GNHD~p~~~~~l-s~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pill~kg~~~valyGl~~i~derl~-- 193 (627)
.++-++++.+||+.-.|...+ ..++.|..+|+. ++|... .... ...|+.+..++.+|++.|+.+.......
T Consensus 72 ~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~-~~g~~~----~~~~-~~~~~i~~~~g~kIg~ig~t~~~~~~~~~~ 145 (239)
T smart00854 72 AGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIA-HVGAGR----NLAE-ARKPAIVEVKGIKIALLAYTYGTNNGWAAS 145 (239)
T ss_pred hCCCEEEeccCcccccchHHHHHHHHHHHHCCCC-EeeCCC----ChHH-hhCcEEEEECCEEEEEEEEEcCCCCCcccC
Confidence 467788899999988876544 345566666653 444421 0111 1246677888999999997543210000
Q ss_pred -------hhhc-ChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCC-Ccc---ccccccCCcCCCEEEcCCccccc
Q 006878 194 -------RMFQ-TPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTN-PKN---AINEHFLPRFLDFVVWGHEHECL 258 (627)
Q Consensus 194 -------~~f~-~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~-~~~---~i~e~~lp~~~DyVa~GH~H~~~ 258 (627)
.... +...+.....+ ......+-|+++|....... |.. .+...++..++|+|+.||-|..+
T Consensus 146 ~~~~g~~~~~~~~~~~i~~~i~~----lr~~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~ 218 (239)
T smart00854 146 KDRPGVALLPDLDREKILADIAR----ARKKADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIGHHPHVLQ 218 (239)
T ss_pred CCCCCeeecCcCCHHHHHHHHHH----HhccCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCC
Confidence 0000 00011100011 11134689999999865321 111 12223445689999999999864
No 111
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.26 E-value=0.032 Score=58.91 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (627)
++.+++|+|-. +..+..++..+.....+.+|+.||++|...++.+++..
T Consensus 43 ~i~vvGDIHG~------------~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~l 91 (285)
T cd07415 43 PVTVCGDIHGQ------------FYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLL 91 (285)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHHH
Confidence 58899999954 45566777666555567899999999999888775543
No 112
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.05 E-value=0.049 Score=57.76 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=37.9
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (627)
++.+++|+|-. +..+.++++.......+-+|+.||++|...++.+++..
T Consensus 51 ~i~viGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~l 99 (293)
T cd07414 51 PLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICL 99 (293)
T ss_pred ceEEEEecCCC------------HHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHHH
Confidence 58999999954 45667777766555678899999999999888875543
No 113
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=95.00 E-value=0.042 Score=58.94 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~ 73 (627)
++.+++|+|-. +..+.+++..+.....+-+|+.||++|...++.+++.
T Consensus 60 ~i~vvGDIHG~------------~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl~ 107 (320)
T PTZ00480 60 PLKICGDVHGQ------------YFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETIC 107 (320)
T ss_pred CeEEEeecccC------------HHHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHHH
Confidence 58899999954 4556677766655566788999999999988876543
No 114
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=94.21 E-value=0.09 Score=56.06 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (627)
.+.+++|+|-. +..+..+++.+.....+.+|+.||++|...++.+++..
T Consensus 44 ~i~vvGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~l 92 (303)
T PTZ00239 44 PVNVCGDIHGQ------------FYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEY 92 (303)
T ss_pred CEEEEEeCCCC------------HHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHHHH
Confidence 48899999954 45566676655545667899999999999888775543
No 115
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=94.19 E-value=0.074 Score=56.47 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=35.4
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHH
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~ 73 (627)
+.+++|+|-. +..+.++++.+.-...+-+|+.||++|...++.+++.
T Consensus 54 ~~ViGDIHG~------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ 100 (294)
T PTZ00244 54 VRVCGDTHGQ------------YYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETIT 100 (294)
T ss_pred ceeeccCCCC------------HHHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHHH
Confidence 7789999965 4556777766655456678899999999988877543
No 116
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.99 E-value=0.15 Score=48.85 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=34.0
Q ss_pred HHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCC
Q 006878 48 EQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGN 127 (627)
Q Consensus 48 ~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GN 127 (627)
+....|++|+.||+|....-+ +-|..|. +++..+.+|+|.|-||
T Consensus 23 k~gpFd~~ic~Gdff~~~~~~--------~~~~~y~----------------------------~g~~~~pipTyf~ggn 66 (150)
T cd07380 23 KKGPFDALLCVGDFFGDDEDD--------EELEAYK----------------------------DGSKKVPIPTYFLGGN 66 (150)
T ss_pred ccCCeeEEEEecCccCCccch--------hhHHHHh----------------------------cCCccCCCCEEEECCC
Confidence 456789999999999876543 2344442 3345789999999999
Q ss_pred CC
Q 006878 128 HD 129 (627)
Q Consensus 128 HD 129 (627)
|.
T Consensus 67 ~~ 68 (150)
T cd07380 67 NP 68 (150)
T ss_pred CC
Confidence 96
No 117
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.90 E-value=0.13 Score=56.43 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCChHHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLVK 74 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~tl~~ 74 (627)
+|++++|+|-- +.+|..+++.+.-... +.+|+.||+.|....+.+++..
T Consensus 67 ~i~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~l 116 (377)
T cd07418 67 EVVVVGDVHGQ------------LHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLL 116 (377)
T ss_pred CEEEEEecCCC------------HHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHH
Confidence 57999999954 4556677765533223 4588999999999888775543
No 118
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=93.55 E-value=0.14 Score=54.87 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCChHHHHHHH
Q 006878 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAI 76 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~-~~VD~VLlaGDLFd~~~Ps~~tl~~~~ 76 (627)
..++.++.|+|-. +..|.++++...- ..-|.+|+.||++|...+|.+++...+
T Consensus 59 ~~~~~VvGDIHG~------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~ 112 (316)
T cd07417 59 GEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLF 112 (316)
T ss_pred CceeEEeecccCC------------HHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHH
Confidence 3579999999954 4556666655432 123678999999999999987665444
No 119
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=93.47 E-value=0.17 Score=54.34 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCChHHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVK 74 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (627)
++.++.|+|-- +..|..+++.+.-- .-+.+|+.||+.|...-|.+++..
T Consensus 52 ~~~vvGDiHG~------------~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~l 101 (321)
T cd07420 52 QVTICGDLHGK------------LDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILII 101 (321)
T ss_pred CeEEEEeCCCC------------HHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHH
Confidence 68999999955 34556666544221 236789999999999888775543
No 120
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=93.09 E-value=0.23 Score=53.13 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc----C----CCEEEEcCCCCCCCCCChHHHHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK----E----VDFVLLGGDLFHENKPSRSTLVK 74 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~----~----VD~VLlaGDLFd~~~Ps~~tl~~ 74 (627)
.+.+++|+|-. +..|.++++.+.-. . ..-+|+.||++|....+.+++..
T Consensus 49 ~~~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~l 105 (311)
T cd07419 49 PIKIFGDIHGQ------------FGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICL 105 (311)
T ss_pred CEEEEEeccCC------------HHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHH
Confidence 47888999954 45566666544211 0 12477899999999888775543
No 121
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.63 E-value=0.034 Score=63.50 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=2.1
Q ss_pred ccccccccc
Q 006878 522 AASFEDIRS 530 (627)
Q Consensus 522 ~~~~~~~~~ 530 (627)
--||...+.
T Consensus 458 tlSWk~~~~ 466 (556)
T PF05918_consen 458 TLSWKEAKK 466 (556)
T ss_dssp --TTS----
T ss_pred ceeeeeccc
Confidence 566766444
No 122
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=92.37 E-value=0.55 Score=50.72 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=45.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc---CCCEEEEcCCCCCCCCC-ChHH-----HHHHHHHHHHhh
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK---EVDFVLLGGDLFHENKP-SRST-----LVKAIEILRRHC 83 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~---~VD~VLlaGDLFd~~~P-s~~t-----l~~~~~lLr~l~ 83 (627)
|||.+-.=.|-- ++..-+-+..+.+. +||++|++||+=-..+- ...+ -++-|.-|=
T Consensus 1 MrIaVqGCcHG~------------Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~--- 65 (456)
T KOG2863|consen 1 MRIAVQGCCHGE------------LDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFY--- 65 (456)
T ss_pred Cceeeecccchh------------HHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHH---
Confidence 566666666632 22233444666666 89999999996322211 1111 122222222
Q ss_pred cCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 84 LNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 84 ~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
+|......+.+|.+.|-|||....
T Consensus 66 -------------------------~YYsge~~APVlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 66 -------------------------KYYSGEIKAPVLTIFIGGNHEASN 89 (456)
T ss_pred -------------------------HHhCCcccCceeEEEecCchHHHH
Confidence 333344578899999999999754
No 123
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=90.42 E-value=0.13 Score=46.21 Aligned_cols=15 Identities=93% Similarity=1.730 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCCCC
Q 006878 584 TRGRGRGRGRGRGRG 598 (627)
Q Consensus 584 ~~~~~~~~~rgr~~~ 598 (627)
+||||||||||||||
T Consensus 95 ~rgrgrg~Grg~~~g 109 (109)
T KOG3428|consen 95 GRGRGRGRGRGRGRG 109 (109)
T ss_pred ccccccccccCCCCC
Confidence 555556655555554
No 124
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=90.00 E-value=1.4 Score=49.44 Aligned_cols=111 Identities=17% Similarity=0.341 Sum_probs=62.0
Q ss_pred CCceEEEEEcCCCCCCCCCc----------h--------hchhcHH--HHHHHHHHHH----HHcCCCEEEEcCCCCCCC
Q 006878 10 ANTVRILVATDCHLGYMEKD----------E--------IRRHDSF--EAFEEICSIA----EQKEVDFVLLGGDLFHEN 65 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d----------~--------~r~~Ds~--~tFeeil~~A----~~~~VD~VLlaGDLFd~~ 65 (627)
..-.+|+++||+||-=.+.. + .|-...+ ..++.+++.+ .....||+|-.||..|..
T Consensus 34 ~~l~~f~~~tDvHi~D~esP~r~~~l~~~~~~~~~~~s~y~P~~~~t~~v~~AaVqtvNal~~~~p~df~is~GD~~nn~ 113 (492)
T TIGR03768 34 KRLLRFFTISDVHITDKESPNQLIYLQQTEPAAAPNTSIYSPVMLYSTQVLDAAVQTVNDLHKRDRFDFGISLGDACNST 113 (492)
T ss_pred chheeeeeeeeeeeccccCchhhhhhcccccccCCCccccChhHHHHHHHHHHHHHHHHHhhcCCCceEEEeccccccch
Confidence 34588999999999643311 0 1112222 2355555544 445689999999999875
Q ss_pred CCChHHHHHHHHHHHHhhcCCCccceee-ech--hhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 66 KPSRSTLVKAIEILRRHCLNDRPVQFQV-VSD--QAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 66 ~Ps~~tl~~~~~lLr~l~~g~~p~~~~~-lsd--~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
. ...|..++++|. | ++|.=-- .-+ ..+-|+..| .-+-++..||+|.+.||||...
T Consensus 114 ~--~nElrWyidvld----G-~~I~p~SG~~~~~e~v~~~~p~-----~a~GL~~~iPWY~v~GNHD~~~ 171 (492)
T TIGR03768 114 Q--YNELRWYIDVLD----G-KPITPSSGAHAGADTIDYQKPF-----QAAGLDKSIPWYQVLGNHDHFW 171 (492)
T ss_pred h--HHHHHHHHHHhc----C-CeeccCCCCCCCccCCCCCCcc-----cccccCCCCceEEeecCCcccc
Confidence 3 445556665553 2 3332100 000 001233222 1223456799999999999753
No 125
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=87.66 E-value=0.73 Score=52.89 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHcC
Q 006878 39 AFEEICSIAEQKE 51 (627)
Q Consensus 39 tFeeil~~A~~~~ 51 (627)
+|+.+++++.+++
T Consensus 60 Ai~a~~DLcEDed 72 (556)
T PF05918_consen 60 AINAQLDLCEDED 72 (556)
T ss_dssp HHHHHHHHHT-SS
T ss_pred HHHHHHHHHhccc
Confidence 4455555554444
No 126
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=82.33 E-value=9 Score=44.19 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCCCCC--CCchhchhc--HHHHH-HHHHHHHHHcCCCEEEE-cCCCCCCCC
Q 006878 10 ANTVRILVATDCHLGYM--EKDEIRRHD--SFEAF-EEICSIAEQKEVDFVLL-GGDLFHENK 66 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~--~~d~~r~~D--s~~tF-eeil~~A~~~~VD~VLl-aGDLFd~~~ 66 (627)
...++++|+||+|-+-. ..+..+..| -|.+| ..+-++|...+||.+++ +||+.+.+-
T Consensus 40 ~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg 102 (602)
T KOG4419|consen 40 WGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTG 102 (602)
T ss_pred cccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCce
Confidence 35689999999996644 222211111 13444 45556788899998765 899987754
No 127
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=71.58 E-value=29 Score=37.62 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=15.0
Q ss_pred HHhhcccccccCCCcHHHHHHHHHhhc
Q 006878 433 VAENNLKMEIIPVNDLDVALHNFVNKD 459 (627)
Q Consensus 433 v~~~~~~l~~l~~~~l~~a~~~fv~k~ 459 (627)
-+|+++...+| ...|.--|+.|.=.|
T Consensus 211 ~~ey~~Rr~ll-~sRL~vTVqSF~Wsd 236 (465)
T KOG3973|consen 211 SREYYNRRLLL-NSRLKVTVQSFLWSD 236 (465)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhcccH
Confidence 35565544444 345777788877444
No 128
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.32 E-value=18 Score=40.68 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE-VDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~-VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
.|||++.|.--. .-..|+.|-+.-++.+ .|++++.|++|.+..-+.+ +.+|..
T Consensus 6 ~kILv~Gd~~Gr-----------~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e--------~~~ykn------- 59 (528)
T KOG2476|consen 6 AKILVCGDVEGR-----------FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAE--------VEKYKN------- 59 (528)
T ss_pred ceEEEEcCcccc-----------HHHHHHHHHHHhhcCCCceEEEEecccCCCccchhH--------HHHHhc-------
Confidence 799999887532 2346777777777777 6999999999997433322 223321
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccce
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKM 155 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~ 155 (627)
.+..+.||+|+.-+|--.+.. .+..++-...+.++.|+|+.
T Consensus 60 ---------------------g~~~vPiptY~~g~~~~~~~k--y~~n~~g~Ei~~Nlt~Lg~~ 100 (528)
T KOG2476|consen 60 ---------------------GTKKVPIPTYFLGDNANETEK--YFENSDGKEIAENLTYLGRK 100 (528)
T ss_pred ---------------------CCccCceeEEEecCCCCccce--ecccCCCcccccceeeeccc
Confidence 224678899998888753321 11222344556677777764
No 129
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=65.62 E-value=17 Score=38.69 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH-----HcCCCEEEEcCCCCCC
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE-----QKEVDFVLLGGDLFHE 64 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~-----~~~VD~VLlaGDLFd~ 64 (627)
...+|++.||+||.-.. .+.+++.+++.-. ++-|-++|+.|++...
T Consensus 26 ~~~~~VilSDV~LD~p~--------tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~ 76 (291)
T PTZ00235 26 KRHNWIIMHDVYLDSPY--------TFEVLDKMLSLYVNTYPENELPVGFIFMGDFISL 76 (291)
T ss_pred CceEEEEEEeeccCCHH--------HHHHHHHHHHHhhccCcccCCCeEEEEecCccCC
Confidence 44789999999998432 3556666665442 2348899999998765
No 130
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=63.26 E-value=6.9 Score=45.43 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 42 EICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 42 eil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
.+..++++.-||-+=+.||+||.. |.+. ..|+.|..+
T Consensus 175 al~~lIqrL~VDhLHIvGDIyDRG-p~pd---~ImD~Lm~~ 211 (640)
T PF06874_consen 175 ALSELIQRLAVDHLHIVGDIYDRG-PRPD---KIMDRLMNY 211 (640)
T ss_pred HHHHHHHHHhhhheeecccccCCC-CChh---HHHHHHhcC
Confidence 444556778899999999999986 3433 467777654
No 131
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=61.49 E-value=33 Score=34.73 Aligned_cols=57 Identities=25% Similarity=0.439 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCC
Q 006878 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNV 117 (627)
Q Consensus 38 ~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~ 117 (627)
..+++++..+.+.+.|+|+++|=. .-....+..+++.+++. .
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~----gvt~~~~~~~v~~ik~~----------------------------------~ 52 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL----GIVESNLDQTVKKIKKI----------------------------------T 52 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC----CCCHHHHHHHHHHHHhh----------------------------------c
Confidence 456667777888899999999972 12345566677777763 3
Q ss_pred CCcEEEEcCCCCCCC
Q 006878 118 GLPVFSIHGNHDDPA 132 (627)
Q Consensus 118 ~iPVf~I~GNHD~p~ 132 (627)
.+||++-+||++.-+
T Consensus 53 ~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 53 NLPVILFPGNVNGLS 67 (205)
T ss_pred CCCEEEECCCccccC
Confidence 699999999999755
No 132
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=60.40 E-value=85 Score=33.36 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=30.2
Q ss_pred CCCCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 006878 5 PREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKP 67 (627)
Q Consensus 5 ~~~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~P 67 (627)
.++...+-.|++.++|+|-=... |- .--.-|+++++||...-..+
T Consensus 54 ~ap~~~~~~r~VcisdtH~~~~~---------------i~---~~p~gDvlihagdfT~~g~~ 98 (305)
T KOG3947|consen 54 DAPVGPGYARFVCISDTHELTFD---------------IN---DIPDGDVLIHAGDFTNLGLP 98 (305)
T ss_pred CCCCCCCceEEEEecCcccccCc---------------cc---cCCCCceEEeccCCccccCH
Confidence 34566788999999999943211 10 12356899999998765554
No 133
>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]
Probab=58.68 E-value=5.2 Score=36.20 Aligned_cols=11 Identities=91% Similarity=1.676 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q 006878 584 TRGRGRGRGRG 594 (627)
Q Consensus 584 ~~~~~~~~~rg 594 (627)
|||||||||||
T Consensus 99 grg~Grg~~~g 109 (109)
T KOG3428|consen 99 GRGRGRGRGRG 109 (109)
T ss_pred ccccccCCCCC
Confidence 44444445544
No 134
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=56.39 E-value=14 Score=41.31 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=18.3
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF 62 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLF 62 (627)
...+||++.|+.+..... +.++..+. .++++|++|+.||..
T Consensus 103 ~~~~r~a~~SC~~~~~~~---------~~~~~~~a---~~~~~D~~l~lGD~I 143 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDGY---------FPAYRRIA---ERDDPDFVLHLGDQI 143 (453)
T ss_dssp ---EEEEEE----CCC------------HHHHHHT---T-S--SEEEE-S-SS
T ss_pred CCceEEEEECCCCcccCh---------HHHHHhhh---ccCCCcEEEEeCCee
Confidence 345999999999864211 34444433 337899999999964
No 135
>PTZ00034 40S ribosomal protein S10; Provisional
Probab=46.96 E-value=16 Score=34.00 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=6.8
Q ss_pred HhhcchHHHHHHH
Q 006878 456 VNKDDRLAFYSCV 468 (627)
Q Consensus 456 v~k~d~~a~~~~v 468 (627)
|-|.+..||.+++
T Consensus 4 ipK~~r~~Iye~L 16 (124)
T PTZ00034 4 VPKANRKAIYRYL 16 (124)
T ss_pred cchHHHHHHHHHH
Confidence 4455555555544
No 136
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=46.74 E-value=55 Score=33.60 Aligned_cols=54 Identities=30% Similarity=0.407 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCC
Q 006878 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~i 119 (627)
..++++.+.+.+.|+|+++|=.-- ..+.+..+++.++++ .+
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~v----t~~~~~~~v~~ik~~-----------------------------------~l 56 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGV----TYEKTDTLIEALRRY-----------------------------------GL 56 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcc----cHHHHHHHHHHHhcc-----------------------------------CC
Confidence 456778888889999999997621 233455566777654 39
Q ss_pred cEEEEcCCCCCCC
Q 006878 120 PVFSIHGNHDDPA 132 (627)
Q Consensus 120 PVf~I~GNHD~p~ 132 (627)
||+.-|||++.-+
T Consensus 57 Pvilfp~~~~~i~ 69 (223)
T TIGR01768 57 PIILFPSNPTNVS 69 (223)
T ss_pred CEEEeCCCccccC
Confidence 9999999999754
No 137
>PRK09982 universal stress protein UspD; Provisional
Probab=46.48 E-value=43 Score=30.93 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 006878 40 FEEICSIAEQKEVDFVLLG 58 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLla 58 (627)
-++|++.|.++++|+|+++
T Consensus 92 ~~~I~~~A~~~~aDLIVmG 110 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCG 110 (142)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3788999999999998885
No 138
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=46.05 E-value=43 Score=34.54 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCc
Q 006878 41 EEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLP 120 (627)
Q Consensus 41 eeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iP 120 (627)
+++++.+.+...|+|+++|=+ + ..++..++.++++. ..+|
T Consensus 22 ~~~~~~~~~~gtDai~VGGS~-~-----~~~~d~vv~~ik~~----------------------------------~~lP 61 (230)
T PF01884_consen 22 EEALEAACESGTDAIIVGGSD-T-----GVTLDNVVALIKRV----------------------------------TDLP 61 (230)
T ss_dssp HHHHHHHHCTT-SEEEEE-ST-H-----CHHHHHHHHHHHHH----------------------------------SSS-
T ss_pred HHHHHHHHhcCCCEEEECCCC-C-----ccchHHHHHHHHhc----------------------------------CCCC
Confidence 567777789999999999987 1 23566778888874 4699
Q ss_pred EEEEcCCCCCCC
Q 006878 121 VFSIHGNHDDPA 132 (627)
Q Consensus 121 Vf~I~GNHD~p~ 132 (627)
|+.-|||++.-+
T Consensus 62 vilfPg~~~~vs 73 (230)
T PF01884_consen 62 VILFPGSPSQVS 73 (230)
T ss_dssp EEEETSTCCG--
T ss_pred EEEeCCChhhcC
Confidence 999999998754
No 139
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=44.84 E-value=49 Score=34.02 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=32.6
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
+-++.|+|-- |.-+.|+....-.------++-||..|...-|.++....+-+..+
T Consensus 48 VTvCGDIHGQ------------FyDL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~Lkar 102 (306)
T KOG0373|consen 48 VTVCGDIHGQ------------FYDLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKAR 102 (306)
T ss_pred eeEeeccchh------------HHHHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhc
Confidence 5678898843 223344444332221122466799999999998876655544443
No 140
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=44.60 E-value=17 Score=37.92 Aligned_cols=7 Identities=100% Similarity=1.835 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 006878 589 RGRGRGR 595 (627)
Q Consensus 589 ~~~~rgr 595 (627)
|||||||
T Consensus 22 ~~~~~~~ 28 (257)
T PTZ00070 22 RGRGRGR 28 (257)
T ss_pred CCCCCCC
Confidence 3333333
No 141
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=44.57 E-value=38 Score=36.79 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCChHH
Q 006878 14 RILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRST 71 (627)
Q Consensus 14 KILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~t 71 (627)
-|.++.|+|--|. | +-.+++.+....+ .-.|+.||..|...-|.++
T Consensus 60 PV~i~GDiHGq~~--------D----Llrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~ 106 (331)
T KOG0374|consen 60 PVKIVGDIHGQFG--------D----LLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLET 106 (331)
T ss_pred CEEEEccCcCCHH--------H----HHHHHHhcCCCCCcccEEEecccccCCccceEE
Confidence 4788999995432 1 2233333331113 3457789999998877764
No 142
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.82 E-value=78 Score=32.79 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCC
Q 006878 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~i 119 (627)
-.++++.+.+-+.|+|+++|=+=. ..+.+..+++.++. +.++
T Consensus 30 ~~ei~~~~~~~GTDaImIGGS~gv----t~~~~~~~v~~ik~----------------------------------~~~l 71 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMIGGSDGV----TEENVDNVVEAIKE----------------------------------RTDL 71 (240)
T ss_pred cHHHHHHHHHcCCCEEEECCcccc----cHHHHHHHHHHHHh----------------------------------hcCC
Confidence 468888899999999999996522 33445667777663 2479
Q ss_pred cEEEEcCCCCCCCC
Q 006878 120 PVFSIHGNHDDPAG 133 (627)
Q Consensus 120 PVf~I~GNHD~p~~ 133 (627)
||+.-||||..-+.
T Consensus 72 PvilfP~~~~~is~ 85 (240)
T COG1646 72 PVILFPGSPSGISP 85 (240)
T ss_pred CEEEecCChhccCc
Confidence 99999999997553
No 143
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=42.75 E-value=46 Score=34.76 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHH
Q 006878 15 ILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (627)
Q Consensus 15 ILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~ 73 (627)
+.++.|+|-- |.-+-+++++.-.-.----|+.||+.|...-|.+|..
T Consensus 45 vtvcGDIHGQ------------f~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~l 91 (303)
T KOG0372|consen 45 VTVCGDIHGQ------------FYDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETFL 91 (303)
T ss_pred cEEeecccch------------HHHHHHHHHhCCCCCCCceEeecchhccccchHHHHH
Confidence 4678899942 2223333333322222335778999999988877643
No 144
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=41.42 E-value=19 Score=42.01 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=6.6
Q ss_pred hhhhHHHHHHhh
Q 006878 425 NQQNIEALVAEN 436 (627)
Q Consensus 425 ~~~~~~~~v~~~ 436 (627)
..+.+.+++..+
T Consensus 246 tee~L~~~F~~f 257 (578)
T TIGR01648 246 TEEIIEKSFSEF 257 (578)
T ss_pred CHHHHHHHHHhc
Confidence 334556666655
No 145
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=38.84 E-value=66 Score=35.20 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=39.4
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHH
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLV 73 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~ 73 (627)
...+--++|.|+.++-.. -.+.++|++.+++.++| |++||=-|+-.+-...|-.
T Consensus 48 ~eIv~TiiCGDnyf~en~---------eea~~~i~~mv~~~~pD-~viaGPaFnagrYG~acg~ 101 (349)
T PF07355_consen 48 AEIVATIICGDNYFNENK---------EEALKKILEMVKKLKPD-VVIAGPAFNAGRYGVACGE 101 (349)
T ss_pred CEEEEEEEECcchhhhCH---------HHHHHHHHHHHHhcCCC-EEEEcCCcCCchHHHHHHH
Confidence 344556778888776322 25678999999999999 6788999998876655443
No 146
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=37.64 E-value=31 Score=38.69 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=7.6
Q ss_pred ChHHHHHHHHHHHHh
Q 006878 68 SRSTLVKAIEILRRH 82 (627)
Q Consensus 68 s~~tl~~~~~lLr~l 82 (627)
+-+|+...+-+|..+
T Consensus 49 sGKTla~~lpil~~l 63 (456)
T PRK10590 49 TGKTAGFTLPLLQHL 63 (456)
T ss_pred CcHHHHHHHHHHHHh
Confidence 445555555555443
No 147
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=37.16 E-value=41 Score=36.17 Aligned_cols=20 Identities=30% Similarity=0.732 Sum_probs=14.2
Q ss_pred HHcCCCEEEEcCCCCCCCCCC
Q 006878 48 EQKEVDFVLLGGDLFHENKPS 68 (627)
Q Consensus 48 ~~~~VD~VLlaGDLFd~~~Ps 68 (627)
..+++|+ +++|||.+..-++
T Consensus 69 ~~~dId~-~~aGDLlnQ~i~s 88 (329)
T PF07451_consen 69 KKEDIDY-LFAGDLLNQIISS 88 (329)
T ss_dssp -GGG-SE-EEEEETTCCCCHH
T ss_pred CHHHCeE-EEehhhhhhhHHH
Confidence 4568995 7899999987654
No 148
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=35.99 E-value=39 Score=38.12 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 45 SIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 45 ~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
..+++.-||-+=+.||+||.. |-+. +.|+.|-.|
T Consensus 184 ~~iqrLvVDhLHiVGDIyDRG-P~pd---~Imd~L~~y 217 (648)
T COG3855 184 YLIQRLVVDHLHIVGDIYDRG-PYPD---KIMDTLINY 217 (648)
T ss_pred HHHHHHhhhheeeecccccCC-CCch---HHHHHHhhc
Confidence 345677899999999999986 3332 356666554
No 149
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=34.06 E-value=43 Score=35.41 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCEEEEcC-CCCCCCC---------CChHHHHHHHHHHHHhhc---------CCCccceeeechhhhhc
Q 006878 41 EEICSIAEQKEVDFVLLGG-DLFHENK---------PSRSTLVKAIEILRRHCL---------NDRPVQFQVVSDQAVNF 101 (627)
Q Consensus 41 eeil~~A~~~~VD~VLlaG-DLFd~~~---------Ps~~tl~~~~~lLr~l~~---------g~~p~~~~~lsd~~~~f 101 (627)
+.|.++..+.+||.||++| |=+-.++ ...+-..++++.+|+|.- |-..-.||-|=++..||
T Consensus 143 ~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS~yEall~AGANF 222 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQSHFESLIRAGANF 222 (283)
T ss_pred HHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccc
Confidence 6788899999999999998 3332211 122334567788888741 11222456666677777
Q ss_pred ccccCccccCCCCCCCCCcEEEE
Q 006878 102 QNKFGHVNYEDPHFNVGLPVFSI 124 (627)
Q Consensus 102 ~~~~~~vNy~d~n~~~~iPVf~I 124 (627)
.+.=.++| +.+=-|||++
T Consensus 223 ASSP~RVl-----IHalDPV~i~ 240 (283)
T TIGR02855 223 ASSPSRVN-----IHALDPVYIV 240 (283)
T ss_pred cCCccceE-----EeccCcceeE
Confidence 76555554 2333466665
No 150
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.23 E-value=67 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCC
Q 006878 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVG 118 (627)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~ 118 (627)
..+++++.+.+..+|+|++-.++-+.+ ...+++.|++. ...
T Consensus 31 ~~~~~~~~~~~~~~d~iiid~~~~~~~------~~~~~~~i~~~---------------------------------~~~ 71 (112)
T PF00072_consen 31 SGEEALELLKKHPPDLIIIDLELPDGD------GLELLEQIRQI---------------------------------NPS 71 (112)
T ss_dssp SHHHHHHHHHHSTESEEEEESSSSSSB------HHHHHHHHHHH---------------------------------TTT
T ss_pred CHHHHHHHhcccCceEEEEEeeecccc------ccccccccccc---------------------------------ccc
Confidence 357788888999999999998877742 12355556553 356
Q ss_pred CcEEEEcCCCCC
Q 006878 119 LPVFSIHGNHDD 130 (627)
Q Consensus 119 iPVf~I~GNHD~ 130 (627)
+|++++..++|.
T Consensus 72 ~~ii~~t~~~~~ 83 (112)
T PF00072_consen 72 IPIIVVTDEDDS 83 (112)
T ss_dssp SEEEEEESSTSH
T ss_pred ccEEEecCCCCH
Confidence 899999977774
No 151
>PRK10116 universal stress protein UspC; Provisional
Probab=33.13 E-value=1.1e+02 Score=27.62 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCCEEEEcC
Q 006878 40 FEEICSIAEQKEVDFVLLGG 59 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLlaG 59 (627)
.+.|++.|.+.++|+|+++-
T Consensus 91 ~~~I~~~a~~~~~DLiV~g~ 110 (142)
T PRK10116 91 SEHILEVCRKHHFDLVICGN 110 (142)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 45677777777777777743
No 152
>PRK15005 universal stress protein F; Provisional
Probab=32.87 E-value=97 Score=28.04 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 006878 40 FEEICSIAEQKEVDFVLLG 58 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLla 58 (627)
.+.|++.|.++++|+|+++
T Consensus 96 ~~~I~~~a~~~~~DLIV~G 114 (144)
T PRK15005 96 KDRILELAKKIPADMIIIA 114 (144)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 4668888888888888885
No 153
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=31.87 E-value=1.8e+02 Score=27.23 Aligned_cols=40 Identities=18% Similarity=0.044 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 006878 38 EAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 38 ~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
.+-+++++.|.++++|+|.+++=+-. ....+..+++.|++
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~----~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGG----HLTLVPALRKELDK 79 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhh----hHHHHHHHHHHHHh
Confidence 45689999999999999999986632 23445555565554
No 154
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.61 E-value=2.6e+02 Score=25.31 Aligned_cols=38 Identities=32% Similarity=0.275 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 006878 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
.+++++.|.+.++|+|++++-.- .....+...++.|++
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~----~~~~~~~~~~~~L~~ 76 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSG----GHMTLFPEVIELLRE 76 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccch----hhHHHHHHHHHHHHh
Confidence 57899999999999999998753 233444555555554
No 155
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=31.41 E-value=43 Score=33.83 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=22.0
Q ss_pred CCCEEEcCCccccccCCeecCCCCceEecCCCcc
Q 006878 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSV 278 (627)
Q Consensus 245 ~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v 278 (627)
+.|+|+.||+|...+ .... +..++.|||..
T Consensus 179 ~~~~vv~GHTh~~~~--~~~~--~~i~IDtGs~~ 208 (218)
T PRK09968 179 GADYFIFGHMMFDNI--QTFA--NQIYIDTGSPK 208 (218)
T ss_pred CCCEEEECCCCcCcc--eeEC--CEEEEECCCCC
Confidence 468999999998754 3333 36889999853
No 156
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=31.23 E-value=1.8e+02 Score=28.08 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=25.3
Q ss_pred hcHHHHHHHHHHHHHH-cCCCEEEEcCCCCCC-CCCChHHHH
Q 006878 34 HDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHE-NKPSRSTLV 73 (627)
Q Consensus 34 ~Ds~~tFeeil~~A~~-~~VD~VLlaGDLFd~-~~Ps~~tl~ 73 (627)
.|....+.+.++.+.+ +++|+||.+|-.=-. ....++++.
T Consensus 45 ~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~ 86 (163)
T TIGR02667 45 KDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALE 86 (163)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHH
Confidence 3556666777766653 689999999986433 223344443
No 157
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=30.95 E-value=53 Score=37.86 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=18.4
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHhhcC
Q 006878 455 FVNKDDRLAFYSCVQYNLQETRHKIAKDS 483 (627)
Q Consensus 455 fv~k~d~~a~~~~v~~~~~~~~~~~~~~~ 483 (627)
|-+.+...++.++|++.|+..++......
T Consensus 481 ~~~~~~~~~~~E~i~~~lk~~~r~~~~~~ 509 (646)
T KOG2310|consen 481 FNEEDHIDKVEENIDEELKRFKRATRKRG 509 (646)
T ss_pred cchhhhcchHHHHHHHHHHHHHhhhccCC
Confidence 33344556677888888877766655433
No 158
>KOG4501 consensus Transcription coactivator complex, P100 component [Transcription]
Probab=30.84 E-value=37 Score=38.89 Aligned_cols=19 Identities=37% Similarity=0.753 Sum_probs=10.5
Q ss_pred cCCCCCCCCCCCCCCCCCc
Q 006878 582 TSTRGRGRGRGRGRGRGAN 600 (627)
Q Consensus 582 ~~~~~~~~~~~rgr~~~~~ 600 (627)
++|..+|-||||||++...
T Consensus 666 g~gqs~~t~r~Rg~kea~k 684 (707)
T KOG4501|consen 666 GTGQSNGTGRGRGRKEAGK 684 (707)
T ss_pred CcccccccccccccccccC
Confidence 3455566666666664433
No 159
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=30.66 E-value=1.4e+02 Score=30.60 Aligned_cols=55 Identities=29% Similarity=0.400 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCC
Q 006878 40 FEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGL 119 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~i 119 (627)
.+++...|.+.+.|+|+++|=+-- + .++..+++++++.+ . .+
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v----~-~~~~~~~~~ik~~~--------------------------------~-~~ 55 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV----S-STLDNVVRLIKRIR--------------------------------R-PV 55 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch----h-hhHHHHHHHHHHhc--------------------------------C-CC
Confidence 355666677788999999996522 2 45667788888752 2 58
Q ss_pred cEEEEcCCCCCCC
Q 006878 120 PVFSIHGNHDDPA 132 (627)
Q Consensus 120 PVf~I~GNHD~p~ 132 (627)
||+.-|||++.-+
T Consensus 56 Pvilfp~~~~~i~ 68 (219)
T cd02812 56 PVILFPSNPEAVS 68 (219)
T ss_pred CEEEeCCCccccC
Confidence 9999999999654
No 160
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.69 E-value=78 Score=32.84 Aligned_cols=48 Identities=27% Similarity=0.368 Sum_probs=31.1
Q ss_pred ccCCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCce
Q 006878 240 HFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQY 302 (627)
Q Consensus 240 ~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~ 302 (627)
.+-..++|.++.||+|...+. .+++ ...+..|+-. .+ -.++++..+..
T Consensus 182 ~~~~~~vd~vI~GH~Hr~ai~--~i~~--~~yi~lGdW~----~~-------~s~~~v~~~~~ 229 (237)
T COG2908 182 EARRHGVDGVIHGHTHRPAIH--NIPG--ITYINLGDWV----SE-------GSILEVDDGGL 229 (237)
T ss_pred HHHHcCCCEEEecCcccHhhc--cCCC--ceEEecCcch----hc-------ceEEEEecCcE
Confidence 444568999999999998764 2333 4556667654 11 25667776653
No 161
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=29.62 E-value=1.3e+02 Score=31.03 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEEcCCC-CCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEE
Q 006878 44 CSIAEQKEVDFVLLGGDL-FHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVF 122 (627)
Q Consensus 44 l~~A~~~~VD~VLlaGDL-Fd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf 122 (627)
++.+.+...|+|+++|=+ .. ...+..+++.+++ ..+||+
T Consensus 25 ~~~~~~~gtdai~vGGS~~vt-----~~~~~~~v~~ik~-----------------------------------~~lPvi 64 (232)
T PRK04169 25 LEAICESGTDAIIVGGSDGVT-----EENVDELVKAIKE-----------------------------------YDLPVI 64 (232)
T ss_pred HHHHHhcCCCEEEEcCCCccc-----hHHHHHHHHHHhc-----------------------------------CCCCEE
Confidence 366777899999999976 33 2344556666664 258999
Q ss_pred EEcCCCCCCC
Q 006878 123 SIHGNHDDPA 132 (627)
Q Consensus 123 ~I~GNHD~p~ 132 (627)
.-|||++.-+
T Consensus 65 lfp~~~~~i~ 74 (232)
T PRK04169 65 LFPGNIEGIS 74 (232)
T ss_pred EeCCCccccC
Confidence 9999999755
No 162
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=29.32 E-value=64 Score=29.94 Aligned_cols=9 Identities=56% Similarity=0.685 Sum_probs=3.7
Q ss_pred hhHHHHHHH
Q 006878 491 EDIILKVGE 499 (627)
Q Consensus 491 ~d~i~~~~~ 499 (627)
+.+|.++++
T Consensus 73 d~iid~vke 81 (134)
T KOG3293|consen 73 DEIIDKVKE 81 (134)
T ss_pred HHHHHHHHH
Confidence 334444443
No 163
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.20 E-value=2e+02 Score=27.25 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
+-+++++.|++++||+|.++.=+.+ ....+..+++.|++.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~----~~~~~~~~~~~l~~~ 79 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGH----GEIDCKGLRQKCDEA 79 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc----CHHHHHHHHHHHHHC
Confidence 3589999999999999999876643 334566677777763
No 164
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=28.13 E-value=55 Score=39.99 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=10.1
Q ss_pred HHHhhhcCCCCCCCCCCcc
Q 006878 503 ERLKERSNHSKDAPQSTSN 521 (627)
Q Consensus 503 er~~e~~~~~~~~~~~~~~ 521 (627)
.-++.+|.+|-..-..|.+
T Consensus 1131 nmiRdIs~pSAa~inLmig 1149 (1282)
T KOG0921|consen 1131 NMIRDISRPSAADINLMIG 1149 (1282)
T ss_pred HHHHHhcccccccccceec
Confidence 3456666665554445544
No 165
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=27.76 E-value=76 Score=33.40 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCCCChHHHHHHHHHHHHhh
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF--HENKPSRSTLVKAIEILRRHC 83 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLF--d~~~Ps~~tl~~~~~lLr~l~ 83 (627)
...+|+|+||.- |.. +++.++...+.+||.++++|=.. =..+-+...+...++-|+++.
T Consensus 175 g~~~i~faSDvq-Gp~-------------~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii 235 (304)
T COG2248 175 GKSSIVFASDVQ-GPI-------------NDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERII 235 (304)
T ss_pred CCeEEEEccccc-CCC-------------ccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHH
Confidence 457899999987 211 35677778888999999999753 122234456777888887763
No 166
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=26.73 E-value=60 Score=32.18 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=21.4
Q ss_pred CCCEEEcCCccccccCCeecCCCCceEecCCCc
Q 006878 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (627)
Q Consensus 245 ~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~ 277 (627)
+.++|+.||.|.+.+ ...+ +..++.|||-
T Consensus 168 ~~~~iV~GHTh~~~~--~~~~--~~i~ID~Gsv 196 (207)
T cd07424 168 GVDAVVHGHTPVKRP--LRLG--NVLYIDTGAV 196 (207)
T ss_pred CCCEEEECCCCCCcc--eEEC--CEEEEECCCC
Confidence 358999999999864 2333 3578899985
No 167
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=26.56 E-value=1.2e+02 Score=30.25 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCCCcEEEEcCCCCCCCCC
Q 006878 116 NVGLPVFSIHGNHDDPAGV 134 (627)
Q Consensus 116 ~~~iPVf~I~GNHD~p~~~ 134 (627)
...+|+++|--+||.....
T Consensus 87 ~~~~p~~~iwDDHDi~~n~ 105 (228)
T cd07389 87 LAQVPTIGIWDDHDIGDNW 105 (228)
T ss_pred hhcCCEEEecccccccccc
Confidence 3568999999999976543
No 168
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=26.32 E-value=1.4e+02 Score=28.62 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCEEEEcCC
Q 006878 41 EEICSIAEQKEVDFVLLGGD 60 (627)
Q Consensus 41 eeil~~A~~~~VD~VLlaGD 60 (627)
+.+.+++.+++||+|.++|.
T Consensus 53 ~~l~~~i~~~kP~vI~v~g~ 72 (150)
T PF14639_consen 53 ERLKKFIEKHKPDVIAVGGN 72 (150)
T ss_dssp HHHHHHHHHH--SEEEE--S
T ss_pred HHHHHHHHHcCCeEEEEcCC
Confidence 44556677899999999883
No 169
>PHA01794 hypothetical protein
Probab=26.15 E-value=1.2e+02 Score=28.55 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.5
Q ss_pred ccCCCcHHHHHHHHHhhc
Q 006878 442 IIPVNDLDVALHNFVNKD 459 (627)
Q Consensus 442 ~l~~~~l~~a~~~fv~k~ 459 (627)
-|++++.-+|+.+||++.
T Consensus 49 ~lted~~~~aI~d~v~~~ 66 (134)
T PHA01794 49 ALTEDEILDAIADFVETF 66 (134)
T ss_pred ccChhhHHHHHHHHHHHh
Confidence 388888999999999554
No 170
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=26.06 E-value=2e+02 Score=31.33 Aligned_cols=15 Identities=13% Similarity=0.516 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHhh
Q 006878 69 RSTLVKAIEILRRHC 83 (627)
Q Consensus 69 ~~tl~~~~~lLr~l~ 83 (627)
..++..+.=+|++||
T Consensus 41 q~a~atgqVLFqRf~ 55 (367)
T KOG0835|consen 41 QVAMATGQVLFQRFC 55 (367)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555554
No 171
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.02 E-value=2.4e+02 Score=25.04 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
..+++++.+.+.+||+|.++.=..+ ....+...++.+++.
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~~----~~~~~~~~i~~l~~~ 77 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLTT----HMTLMKEVIEELKEA 77 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc----cHHHHHHHHHHHHHc
Confidence 3678999999999999999875433 334555666777653
No 172
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.41 E-value=1.7e+02 Score=24.43 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCC
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD 60 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGD 60 (627)
..||||++.--+.. | +..+...|+.+.+..++++|+.|.
T Consensus 2 ~g~rVli~GgR~~~----D-------~~~i~~~Ld~~~~~~~~~~lvhGg 40 (71)
T PF10686_consen 2 EGMRVLITGGRDWT----D-------HELIWAALDKVHARHPDMVLVHGG 40 (71)
T ss_pred CCCEEEEEECCccc----c-------HHHHHHHHHHHHHhCCCEEEEECC
Confidence 56899999755443 2 244566677778888999988774
No 173
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.17 E-value=1.8e+02 Score=32.77 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=38.7
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHH
Q 006878 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~t 71 (627)
+...+.-++|.|+.++-.. -.+.++|++.+++.++| |++||=-|+-.+-...|
T Consensus 43 ~~eVvaTiiCGDnYf~en~---------eea~~~i~~mv~k~~pD-v~iaGPaFNagrYG~ac 95 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENL---------EEAKAKVLEMIKGANPD-IFIAGPAFNAGRYGMAA 95 (431)
T ss_pred CCEEEEEEEECchhhhhCH---------HHHHHHHHHHHHhcCCC-EEEEcCccCCccHHHHH
Confidence 3444566778888776321 24568899999999999 68899999987755444
No 174
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.96 E-value=1.8e+02 Score=32.74 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=37.9
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHH
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRST 71 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~t 71 (627)
...+.-++|.|+.++-.. -.+.++|++.+++.++| |++||=-|+-.+-...|
T Consensus 44 ~eVvaTiiCGDnYf~en~---------eea~~~i~~mv~k~~pD-v~iaGPaFNagrYG~ac 95 (431)
T TIGR01918 44 AEVVHTVVCGDSFFGENL---------EEAVARVLEMLKDKEPD-IFIAGPAFNAGRYGVAC 95 (431)
T ss_pred CEEEEEEEECchhhhhCH---------HHHHHHHHHHHHhcCCC-EEEEcCccCCccHHHHH
Confidence 344556778888776321 24568899999999999 68899999987755444
No 175
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.85 E-value=80 Score=33.57 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCEEEEcC-CCCCCCC---------CChHHHHHHHHHHHHhhcC---------CCccceeeechhhhhc
Q 006878 41 EEICSIAEQKEVDFVLLGG-DLFHENK---------PSRSTLVKAIEILRRHCLN---------DRPVQFQVVSDQAVNF 101 (627)
Q Consensus 41 eeil~~A~~~~VD~VLlaG-DLFd~~~---------Ps~~tl~~~~~lLr~l~~g---------~~p~~~~~lsd~~~~f 101 (627)
+.|.++..+.+||.||++| |=+-.++ ...+-..++++..|+|--+ -..-.||-|=++-.||
T Consensus 144 ~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS~fEall~AGANF 223 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQSHFEALLEAGANF 223 (287)
T ss_pred HHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCccc
Confidence 5678889999999999998 3332222 1222345677777877321 1112455555666777
Q ss_pred ccccCccccCCCCCCCCCcEEEE
Q 006878 102 QNKFGHVNYEDPHFNVGLPVFSI 124 (627)
Q Consensus 102 ~~~~~~vNy~d~n~~~~iPVf~I 124 (627)
.+.=.+|| +.+=-|||++
T Consensus 224 ASSP~RVl-----IHalDPV~I~ 241 (287)
T PF05582_consen 224 ASSPKRVL-----IHALDPVFIV 241 (287)
T ss_pred cCCccceE-----EeccCcceeE
Confidence 76555554 2333466665
No 176
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.38 E-value=3e+02 Score=28.32 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=44.3
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCChHHHHHHHHHHHHhh
Q 006878 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLVKAIEILRRHC 83 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~tl~~~~~lLr~l~ 83 (627)
.+.|...+-..++....++..+.+.+..|..+++.|.+.+++.|++ .|-. ...+.......+++.|++++
T Consensus 59 ~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~--~~~~~~~~~~~~~~~l~~l~ 129 (279)
T cd00019 59 SICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSY--LGQSKEEGLKRVIEALNELI 129 (279)
T ss_pred CCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC--CCCCHHHHHHHHHHHHHHHH
Confidence 3455443333233333445567788899999999999999998776 4421 11234555666777777764
No 177
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.75 E-value=5.2e+02 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
.-+++++.|+++++|+|.+++=+-++ ...+.++++.|++.
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~----~~~~~~~~~~l~~~ 77 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHG----EIDCKGLREKCDEA 77 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCC----HHHHHHHHHHHHHC
Confidence 35899999999999999998765543 44566778888764
No 178
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=23.46 E-value=1.7e+02 Score=29.39 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 006878 39 AFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
..+++++.+....||+||+ ||-|-.-|...-+ .+++.|++
T Consensus 25 ~~~~~l~~~~~~~pd~vl~--dl~d~~mp~~~Gl-~~~~~l~~ 64 (207)
T PRK11475 25 SQSSFQDAMSRISFSAVIF--SLSAMRSERREGL-SCLTELAI 64 (207)
T ss_pred CHHHHHHHhccCCCCEEEe--eccccCCCCCCHH-HHHHHHHH
Confidence 3467777777778999988 8888777765543 23444443
No 179
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.08 E-value=1e+02 Score=35.12 Aligned_cols=65 Identities=15% Similarity=0.319 Sum_probs=39.8
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEE
Q 006878 45 SIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSI 124 (627)
Q Consensus 45 ~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I 124 (627)
+...+.+||.||++|=. |.. ..+++..-.++|.++ +..+| ++.
T Consensus 114 ~~I~~~~PDIILLaGGt-DGG--~~e~~l~NA~~La~~---------------------------------~~~~p-IIy 156 (463)
T TIGR01319 114 EAIEESNLDIILFAGGT-DGG--EEECGIHNAKMLAEH---------------------------------GLDCA-IIV 156 (463)
T ss_pred HHHhhcCCCEEEEeCCc-CCC--chHHHHHHHHHHHhc---------------------------------CCCCc-EEE
Confidence 34445699999999974 433 244544444555442 45677 567
Q ss_pred cCCCCCCCCCCcchHHHHhhhCCceee
Q 006878 125 HGNHDDPAGVDNLSAVDILSACNLVNY 151 (627)
Q Consensus 125 ~GNHD~p~~~~~ls~ldiL~~~glVn~ 151 (627)
.||.|.... ..++|...++..|
T Consensus 157 AGN~~a~~~-----V~~il~~~~~~~~ 178 (463)
T TIGR01319 157 AGNKDIQDE-----VQEIFDHADIFYR 178 (463)
T ss_pred eCCHHHHHH-----HHHHHhcCCceEE
Confidence 899997532 2357776665433
No 180
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=21.19 E-value=5e+02 Score=24.46 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCC-CChHHHHH
Q 006878 35 DSFEAFEEICSIAEQK-EVDFVLLGGDLFHENK-PSRSTLVK 74 (627)
Q Consensus 35 Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~~-Ps~~tl~~ 74 (627)
|....+.+.++.+.++ ++|+|+.+|-.=.... ...+++.+
T Consensus 44 Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~ 85 (152)
T cd00886 44 DDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRP 85 (152)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHH
Confidence 4455666666666553 7999999998754433 33444433
Done!