Query 006878
Match_columns 627
No_of_seqs 407 out of 2167
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fbw_A DNA repair protein RAD3 100.0 2.4E-82 8.1E-87 688.4 37.2 390 7-405 8-410 (417)
2 4fbk_A DNA repair and telomere 100.0 7.7E-82 2.6E-86 689.9 40.6 389 7-404 71-472 (472)
3 3t1i_A Double-strand break rep 100.0 3E-81 1E-85 682.3 38.4 393 5-406 25-424 (431)
4 1ii7_A MRE11 nuclease; RAD50, 100.0 1.1E-33 3.7E-38 298.1 28.4 284 13-374 1-310 (333)
5 3av0_A DNA double-strand break 100.0 6.7E-33 2.3E-37 298.2 34.5 279 7-371 15-301 (386)
6 3tho_B Exonuclease, putative; 100.0 5.8E-31 2E-35 282.8 22.7 250 13-320 1-271 (379)
7 2q8u_A Exonuclease, putative; 100.0 1.4E-30 4.8E-35 274.2 24.6 259 9-321 15-290 (336)
8 3d03_A Phosphohydrolase; glyce 99.8 3.8E-19 1.3E-23 178.9 13.8 242 13-316 1-264 (274)
9 3ib7_A ICC protein; metallopho 99.8 1.5E-18 5.1E-23 179.5 17.4 243 8-313 21-282 (330)
10 1uf3_A Hypothetical protein TT 99.8 8.2E-18 2.8E-22 164.3 15.1 201 12-309 5-227 (228)
11 2yvt_A Hypothetical protein AQ 99.7 3.9E-17 1.3E-21 163.7 14.2 213 11-306 4-258 (260)
12 1z2w_A Vacuolar protein sortin 99.7 4.4E-16 1.5E-20 151.2 13.6 73 244-322 116-189 (192)
13 2a22_A Vacuolar protein sortin 99.7 8.2E-16 2.8E-20 152.3 15.6 98 218-322 113-213 (215)
14 2xmo_A LMO2642 protein; phosph 99.6 3.8E-15 1.3E-19 161.6 19.6 248 9-310 36-333 (443)
15 2kkn_A Uncharacterized protein 99.6 5E-15 1.7E-19 143.0 13.2 52 244-309 127-178 (178)
16 2nxf_A Putative dimetal phosph 99.5 6.8E-14 2.3E-18 142.8 16.3 87 10-131 3-100 (322)
17 1s3l_A Hypothetical protein MJ 99.5 2.1E-14 7.2E-19 139.9 11.8 165 9-304 21-187 (190)
18 1ute_A Protein (II purple acid 99.5 5.9E-13 2E-17 135.5 18.2 257 10-323 4-301 (313)
19 1su1_A Hypothetical protein YF 99.4 2.2E-12 7.7E-17 127.1 17.5 176 10-317 23-202 (208)
20 3qfm_A SAPH, putative uncharac 99.4 2.1E-12 7.2E-17 132.4 16.5 208 8-309 7-229 (270)
21 3ck2_A Conserved uncharacteriz 99.4 1.6E-12 5.5E-17 124.1 12.2 88 219-315 78-167 (176)
22 1nnw_A Hypothetical protein; s 99.4 2.9E-12 1E-16 128.2 12.4 71 12-131 1-76 (252)
23 3rl5_A Metallophosphoesterase 99.3 1.4E-11 4.9E-16 128.1 13.6 203 7-298 54-291 (296)
24 3rqz_A Metallophosphoesterase; 99.3 7.2E-12 2.5E-16 125.9 8.4 54 11-82 2-55 (246)
25 3tgh_A Glideosome-associated p 99.2 9.8E-11 3.4E-15 124.2 14.7 262 11-321 2-305 (342)
26 1xzw_A Purple acid phosphatase 99.0 2.5E-08 8.7E-13 107.9 20.7 78 9-132 123-205 (426)
27 2qfp_A Purple acid phosphatase 98.9 2.2E-08 7.4E-13 108.2 17.8 78 9-132 116-198 (424)
28 2wdc_A SOXB, sulfur oxidation 98.9 6E-09 2.1E-13 117.3 13.0 185 38-276 105-307 (562)
29 3ive_A Nucleotidase; structura 98.9 1.1E-08 3.7E-13 113.8 12.8 217 11-276 5-254 (509)
30 1hp1_A 5'-nucleotidase; metall 98.8 9.5E-09 3.2E-13 114.2 11.4 205 9-259 5-233 (516)
31 2z1a_A 5'-nucleotidase; metal- 98.8 1.3E-08 4.6E-13 114.1 12.4 201 9-259 26-244 (552)
32 1xm7_A Hypothetical protein AQ 98.7 9.1E-09 3.1E-13 99.5 6.3 81 12-131 1-84 (195)
33 3qfk_A Uncharacterized protein 98.6 1.3E-07 4.3E-12 105.6 13.1 216 10-276 17-266 (527)
34 4h2g_A 5'-nucleotidase; dimer, 98.6 1.3E-07 4.4E-12 106.1 10.4 203 9-258 22-245 (546)
35 3jyf_A 2',3'-cyclic nucleotide 98.5 4E-06 1.4E-10 88.7 18.9 54 11-64 7-65 (339)
36 3ztv_A NAD nucleotidase, NADN; 98.4 2.1E-07 7.2E-12 105.1 7.5 199 10-258 10-231 (579)
37 3gve_A YFKN protein; alpha-bet 98.4 3.9E-06 1.3E-10 88.8 16.1 55 11-65 10-69 (341)
38 1g5b_A Serine/threonine protei 98.0 1.3E-06 4.6E-11 85.8 1.9 46 9-66 9-55 (221)
39 2qjc_A Diadenosine tetraphosph 97.9 5.3E-06 1.8E-10 84.3 4.7 43 13-67 19-62 (262)
40 3c9f_A 5'-nucleotidase; 2',3'- 97.9 1.4E-05 4.9E-10 89.8 7.2 59 6-64 9-73 (557)
41 2dfj_A Diadenosinetetraphospha 97.8 1.4E-05 4.9E-10 82.2 4.5 68 13-131 1-69 (280)
42 1t71_A Phosphatase, conserved 97.8 9.2E-05 3.1E-09 76.3 10.4 190 11-273 3-203 (281)
43 4h1s_A 5'-nucleotidase; hydrol 97.7 0.00015 5.2E-09 80.7 11.8 53 13-65 4-65 (530)
44 3e0j_A DNA polymerase subunit 97.4 0.0015 5.1E-08 71.8 14.4 54 10-66 198-259 (476)
45 1t70_A Phosphatase; crystal, X 97.4 0.0011 3.8E-08 67.4 12.4 186 13-273 1-193 (255)
46 2z72_A Protein-tyrosine-phosph 97.4 0.00018 6.1E-09 75.9 6.5 77 11-131 69-153 (342)
47 2z06_A Putative uncharacterize 97.2 0.0081 2.8E-07 60.9 15.6 183 13-273 1-190 (252)
48 2ie4_C PP2A-alpha;, serine/thr 97.1 0.00073 2.5E-08 70.5 7.5 74 12-132 49-122 (309)
49 1wao_1 Serine/threonine protei 97.0 0.0012 4.1E-08 72.2 8.1 74 11-131 211-285 (477)
50 1fjm_A Protein serine/threonin 96.9 0.0013 4.4E-08 69.3 7.3 72 13-131 57-128 (330)
51 3h63_A Serine/threonine-protei 96.8 0.0025 8.5E-08 66.7 8.6 51 10-72 57-108 (315)
52 3e7a_A PP-1A, serine/threonine 96.7 0.0023 7.8E-08 66.5 7.3 48 13-72 56-103 (299)
53 3icf_A PPT, serine/threonine-p 96.7 0.0034 1.1E-07 66.2 8.7 51 11-73 62-113 (335)
54 3ll8_A Serine/threonine-protei 96.5 0.0039 1.3E-07 66.2 7.3 48 13-72 70-117 (357)
55 1aui_A Calcineurin, serine/thr 96.5 0.0038 1.3E-07 69.1 7.4 48 13-72 83-130 (521)
56 1b34_A Protein (small nuclear 96.4 0.00057 2E-08 61.6 0.1 16 584-599 101-116 (119)
57 1b34_A Protein (small nuclear 95.1 0.0037 1.3E-07 56.3 0.1 16 584-599 97-112 (119)
58 2yeq_A Apased, PHOD, alkaline 94.2 0.067 2.3E-06 59.6 7.2 42 11-65 115-156 (527)
59 3flo_A DNA polymerase alpha su 93.6 0.13 4.4E-06 56.3 7.8 50 11-67 146-196 (460)
60 1xm7_A Hypothetical protein AQ 80.0 0.92 3.2E-05 42.8 3.0 43 217-259 105-153 (195)
61 1g5b_A Serine/threonine protei 62.3 4.7 0.00016 38.7 3.3 30 244-277 177-206 (221)
62 3w01_A Heptaprenylglyceryl pho 47.5 33 0.0011 34.0 6.7 47 45-130 30-76 (235)
63 4e7p_A Response regulator; DNA 44.9 16 0.00055 31.7 3.7 56 8-63 16-78 (150)
64 3tnj_A Universal stress protei 44.8 39 0.0013 29.3 6.2 19 40-58 98-116 (150)
65 3vzx_A Heptaprenylglyceryl pho 40.6 31 0.0011 34.0 5.3 48 44-130 24-71 (228)
66 1mjh_A Protein (ATP-binding do 39.9 62 0.0021 28.4 6.9 12 117-128 150-161 (162)
67 1jmv_A USPA, universal stress 37.4 53 0.0018 28.1 5.8 21 40-60 91-111 (141)
68 2pjk_A 178AA long hypothetical 36.0 58 0.002 30.5 6.2 28 34-61 63-91 (178)
69 3bbo_N Ribosomal protein L15; 34.1 41 0.0014 33.9 4.9 11 547-557 63-73 (257)
70 3fdx_A Putative filament prote 30.2 66 0.0023 27.4 5.2 21 39-59 94-114 (143)
71 2dum_A Hypothetical protein PH 30.0 1E+02 0.0036 27.2 6.7 16 116-131 146-161 (170)
72 3cqj_A L-ribulose-5-phosphate 28.7 2E+02 0.0069 27.9 9.2 71 12-83 79-153 (295)
73 3ngf_A AP endonuclease, family 26.1 92 0.0031 30.1 6.0 53 29-83 84-137 (269)
74 3pzy_A MOG; ssgcid, seattle st 25.8 1.6E+02 0.0054 27.1 7.2 24 38-61 53-76 (164)
75 3hdg_A Uncharacterized protein 25.0 1.8E+02 0.0063 24.0 7.1 54 10-63 5-63 (137)
76 3men_A Acetylpolyamine aminohy 24.9 1.4E+02 0.0049 31.3 7.5 47 35-81 275-328 (362)
77 3n53_A Response regulator rece 23.6 1.3E+02 0.0043 25.2 5.8 52 12-63 3-58 (140)
78 4gqb_C Histone H4 peptide; TIM 22.5 36 0.0012 21.6 1.3 6 583-588 2-7 (26)
79 3eod_A Protein HNR; response r 22.0 1E+02 0.0035 25.4 4.8 54 10-63 5-63 (130)
80 3s3t_A Nucleotide-binding prot 21.9 1.3E+02 0.0045 25.6 5.6 19 40-58 96-115 (146)
81 3obe_A Sugar phosphate isomera 21.9 2E+02 0.0068 28.5 7.7 66 12-83 89-156 (305)
82 3iz6_E 40S ribosomal protein S 21.8 12 0.00042 37.9 -1.4 6 591-596 30-35 (274)
83 3cpq_A 50S ribosomal protein L 21.2 92 0.0031 26.7 4.3 22 40-61 26-47 (110)
84 1qv9_A F420-dependent methylen 21.2 5.1E+02 0.017 25.8 9.9 39 37-80 50-88 (283)
85 1iv0_A Hypothetical protein; r 21.1 1.8E+02 0.006 24.6 6.0 24 35-58 35-58 (98)
86 2lpm_A Two-component response 20.7 57 0.0019 28.6 2.9 47 11-57 7-59 (123)
87 3hv2_A Response regulator/HD d 20.4 2.9E+02 0.01 23.3 7.7 58 5-63 7-70 (153)
88 3cz5_A Two-component response 20.3 2.9E+02 0.01 23.3 7.6 53 11-63 4-63 (153)
89 3q9b_A Acetylpolyamine amidohy 20.2 1.5E+02 0.0052 30.8 6.4 48 34-81 256-310 (341)
No 1
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=100.00 E-value=2.4e-82 Score=688.44 Aligned_cols=390 Identities=45% Similarity=0.819 Sum_probs=336.4
Q ss_pred CCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 006878 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
..+.++|||+|+||+|||+...+..++.|.+.+|+++++.|.+++||+||++|||||...|+.+++..+++.|+++|+||
T Consensus 8 ~~~~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~~~~~~~~~~~lr~~~~g~ 87 (417)
T 4fbw_A 8 LHNENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGD 87 (417)
T ss_dssp --CTTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBSS
T ss_pred CCCCCCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhcccC
Confidence 34568899999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred Cccceeeechhhhhc-ccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce
Q 006878 87 RPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f-~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (627)
+||+||+|||++.+| .+.|+++||+|||++++||||+|+||||.+.+.+..+++++|+.+|++++||+.. ..+++
T Consensus 88 ~~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~I~GNHD~~~~~~~~s~~~lL~~~g~v~l~g~~~----~~~~i 163 (417)
T 4fbw_A 88 KPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVP----ENDNI 163 (417)
T ss_dssp CCCCCEECC------------CCGGGCTTBCBSSCEEECCCGGGC-----CCCHHHHHHHTTSCEECCCCC-------CE
T ss_pred CcccceeccchhhhcccccccccccccccccCCCeEEEEecCCCCccccccccHHHHhccCCeEEEeCCcc----cCCce
Confidence 999999999999999 4789999999999999999999999999998877678999999999999999853 34678
Q ss_pred eEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcC
Q 006878 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (627)
Q Consensus 166 ~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~ 245 (627)
.+.|+++++|+++++|||+||++++++.+++.+ +.+++++|... .++||||+|+||++.++++.+++++.+++.+
T Consensus 164 ~~~pv~l~~g~~~valyG~~~~~d~rl~r~~~~-~~v~~~~p~~~----~~~~~nIlvlH~~~~~~~~~~yip~~l~~~~ 238 (417)
T 4fbw_A 164 VVSPILLQKGFTKLALYGISNVRDERLYHSFRE-NKVKFLRPDLY----RDEWFNLLTVHQNHSAHTPTSYLPESFIQDF 238 (417)
T ss_dssp EECCEEEEETTEEEEEEEECCCCHHHHHHHHHT-TCEEEEEESTT----TTTSEEEEEEESCSSCSSSSSSCCGGGSCTT
T ss_pred eEEeEEEEecCceEEEEeccCCchhhhhhhhhh-hhhhhcCcccc----cCCceEEEEecCCccCCCCcccCchhHhhcC
Confidence 899999999999999999999999999988876 46777776421 3689999999999998877789999999999
Q ss_pred CCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEeccC
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDE 325 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L~~~ 325 (627)
+|||+|||+|.+++.+...+..+.+++||||+++++++++|.++|+|+||+|+++.+++++|||+++|||++.+|+|++.
T Consensus 239 ~DyvalGH~H~~~~~~~~~~~~g~~i~~PGS~~~~s~~e~E~~~kg~~lvei~~~~~~~e~i~l~~~Rpf~~~~v~L~~~ 318 (417)
T 4fbw_A 239 YDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEV 318 (417)
T ss_dssp CSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCHHHHSCCEEEEEEEETTEEEEEEEECSSSCCEEEEEEEGGGC
T ss_pred CCEEEecCccccceeccccCCCCEEEEECCCCCcCCCccccCCCCEEEEEEEECCEEEEEEEECCCcccEEEEEEEeecc
Confidence 99999999999987654444556899999999999999877789999999999999999999999999999999999998
Q ss_pred CCCCC--CCHhHHHHHHHHHHHHHHHHhhhccc---------ccccCCCCeEEEEEeecc-ccccChhhhhhhhhhcccC
Q 006878 326 ADIDP--DDQNSILEHLDKVVRNLIERSSKKTV---------NRSELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVAN 393 (627)
Q Consensus 326 ~~~~~--~~~~~i~~~l~~~v~~~i~~a~~~~~---------~~~~~~~PLiRLrV~~sg-~~~~n~~rfg~~f~~~vaN 393 (627)
.++++ ++.++|.++|.++|++||++|++++. ...++++|||||||+||| |+++||+||||+|+|||||
T Consensus 319 ~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~n~~~f~~~~~~~van 398 (417)
T 4fbw_A 319 SSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVAN 398 (417)
T ss_dssp TTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTTSCCCCCCEEEEEEECTTTCCCCCHHHHHHTTTTTCSC
T ss_pred cccCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCceeEEEEEecCCccccCHHHHHHhhcccccC
Confidence 66664 36889999999999999999988753 234688999999999996 9999999999999999999
Q ss_pred ccceEEEEeccc
Q 006878 394 PQDILIFSKSSK 405 (627)
Q Consensus 394 p~dil~f~~~~~ 405 (627)
|+|||+|+|+++
T Consensus 399 ~~d~~~~~~~~~ 410 (417)
T 4fbw_A 399 ATDVVQFYLKKV 410 (417)
T ss_dssp TTCSEEEECC--
T ss_pred hHHeeeeeeccC
Confidence 999999998754
No 2
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=100.00 E-value=7.7e-82 Score=689.89 Aligned_cols=389 Identities=45% Similarity=0.825 Sum_probs=347.0
Q ss_pred CCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 006878 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
..+.++|||+|+||+|||+...++.++.|.+.+|+++++.|.+++||+||++|||||...|+..++..+++.|+++|+||
T Consensus 71 ~~~~~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~ps~~a~~~~~~~Lr~~~~g~ 150 (472)
T 4fbk_A 71 AGSENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNCLGD 150 (472)
T ss_dssp --CTTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHBSS
T ss_pred CCCCCCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHhcccC
Confidence 45678999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred Cccceeeechhhhhc-ccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce
Q 006878 87 RPVQFQVVSDQAVNF-QNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f-~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (627)
+||+||+|||+..+| .+.|+++||+|||.+++||||+|+||||.+.+.+..+++++|..+|++++||... ..+++
T Consensus 151 ~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~I~GNHD~~~~~~~~s~~~LL~~~g~v~l~g~~~----~~d~i 226 (472)
T 4fbk_A 151 KPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVNYFGRVP----ENDNI 226 (472)
T ss_dssp CCCCCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEECCCCCCSCCC--CCCHHHHHHHTTSCEECCCCS----CSSSE
T ss_pred CcchheecchhhhhcccccccccccccccccCCCcEEEEecCCCCccccccccHHHHhccCCcEEEeCCcc----cCCce
Confidence 999999999999999 5789999999999999999999999999998877678999999999999999853 34678
Q ss_pred eEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcC
Q 006878 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (627)
Q Consensus 166 ~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~ 245 (627)
.+.|+++++|+++++|||+||++++++.+++.+ +.+++++|... .++||||+++||++.++++.+++++++++.+
T Consensus 227 ~~~pv~l~kg~~~valyGl~y~~d~rl~r~~~e-~~v~~~~p~~~----~~~~~nIlvlH~~~~~~~~~~yipe~ll~~g 301 (472)
T 4fbk_A 227 VVSPILLQKGFTKLALYGISNVRDERLYHSFRE-NKVKFLRPDLY----RDEWFNLLTVHQNHSAHTPTSYLPESFIQDF 301 (472)
T ss_dssp EECCEEEEETTEEEEEEECCCCCHHHHHHHHHT-TCEEEEEESTT----GGGEEEEEEEESCSCCSSTTSSCCGGGSCTT
T ss_pred eEEEEEEEeCCceEEEEecCCCchhhhhhhhhh-hhhhhhCcccc----cCCceEEEEecCCccCCCccccCChhhhhcC
Confidence 899999999999999999999999999988876 46777776421 2579999999999998877788999999999
Q ss_pred CCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEeccC
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILKDE 325 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L~~~ 325 (627)
+|||+|||+|.+++.+...+..+.+++||||+++++++++|.++|+|+||+|+++.+++++|||+++|||++.+|+|++.
T Consensus 302 ~DyValGH~H~~~~~~~~~~~~g~~ivyPGS~~~~s~~e~E~~~kg~~lveI~~~~v~ve~I~L~t~Rpf~~~~i~L~~~ 381 (472)
T 4fbk_A 302 YDFVLWGHEHECLIDGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKDIILSEV 381 (472)
T ss_dssp CSEEEEESCCSCEEEEEEETTTTEEEEECCCSSCSSCCGGGCSCCEEEEEEEETTEEEEEEEECSSSCCEEEEEEEGGGC
T ss_pred CCEEEecCcccceeeecccCCCCeEEEECCCccccccCccCCCCCEEEEEEEECCEEEEEEEECCCcccEEEEEEEEecc
Confidence 99999999999987654444556899999999999999888889999999999999999999999999999999999998
Q ss_pred CCCCC--CCHhHHHHHHHHHHHHHHHHhhhccc---------ccccCCCCeEEEEEeecc-ccccChhhhhhhhhhcccC
Q 006878 326 ADIDP--DDQNSILEHLDKVVRNLIERSSKKTV---------NRSELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVAN 393 (627)
Q Consensus 326 ~~~~~--~~~~~i~~~l~~~v~~~i~~a~~~~~---------~~~~~~~PLiRLrV~~sg-~~~~n~~rfg~~f~~~vaN 393 (627)
.++++ ++.++|.++|.+.|++||++|++++. ...++++|||||||+||| |+++||+||||+|+|||||
T Consensus 382 ~~~~~~~~~~~~v~~~l~~~v~~~i~~a~~~~~~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~n~~rf~~~f~~~van 461 (472)
T 4fbk_A 382 SSIPPMVENKKEVLTYLISKVEEAITEANAQWYEAQGTVPVVENEKPPLPLIRLRVDYTGGYQTENPQRFSNRFVGRVAN 461 (472)
T ss_dssp SSCCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCTTSCCCCCCEEEEEEECTTTCCCCCHHHHHGGGTTTCSC
T ss_pred cccCCCcccHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCCcEEEEEEEecCCCcccCHhHHhhhhCCcccC
Confidence 76664 36889999999999999999988753 234688999999999997 9999999999999999999
Q ss_pred ccceEEEEecc
Q 006878 394 PQDILIFSKSS 404 (627)
Q Consensus 394 p~dil~f~~~~ 404 (627)
|+|||+|||||
T Consensus 462 p~d~~~f~~~~ 472 (472)
T 4fbk_A 462 ATDVVQFYLKK 472 (472)
T ss_dssp SSCSEEEECCC
T ss_pred hhheeEEEeCc
Confidence 99999999763
No 3
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=100.00 E-value=3e-81 Score=682.34 Aligned_cols=393 Identities=50% Similarity=0.860 Sum_probs=335.1
Q ss_pred CCCCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhc
Q 006878 5 PREDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCL 84 (627)
Q Consensus 5 ~~~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~ 84 (627)
..++..++|||||+||+|||+...+..++.|.+.+|+++++.|.+++||+||++|||||...|+..++..++++|++||+
T Consensus 25 ~~~~~~~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~ 104 (431)
T 3t1i_A 25 DALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCM 104 (431)
T ss_dssp --CCGGGEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHB
T ss_pred cCCCCCCCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhc
Confidence 34567789999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeechhhhhcc-cccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCcc
Q 006878 85 NDRPVQFQVVSDQAVNFQ-NKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVG 163 (627)
Q Consensus 85 g~~p~~~~~lsd~~~~f~-~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~ 163 (627)
||+||+||+|||+++||. +.|..+||+|||.+++||||+|+||||++.+.+.++++++|+.+|+++|||+.. .++
T Consensus 105 ~~~~~~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~g~~~l~~~~lL~~~glv~~fg~~~----~~e 180 (431)
T 3t1i_A 105 GDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSM----SVE 180 (431)
T ss_dssp CSSCCCCEECSCC------------------CCBCSCEEECCCSSSCCBTTTTBCHHHHHHHHTSEEECCCCC----CSS
T ss_pred cCCcccceeccchhhccccccccccccccccccCCCcEEEEccCCCCcccccccCHHHHhccCCcEEEECCcC----ccc
Confidence 999999999999999998 579999999999999999999999999999888889999999999999999853 357
Q ss_pred ceeEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCC
Q 006878 164 EITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLP 243 (627)
Q Consensus 164 ~i~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp 243 (627)
.+.+.|+++++|+++++|||+||.+++++.+++.+ +.++++.|... .++|+||+++|+++...+...++++++++
T Consensus 181 ~i~~~Pv~l~~g~~~valyGl~~~~~~~l~~~~~~-~~v~~~~p~~~----~~~~~~Ilv~H~~~~~~g~~~~ip~~l~~ 255 (431)
T 3t1i_A 181 KIDISPVLLQKGSTKIALYGLGSIPDERLYRMFVN-KKVTMLRPKED----ENSWFNLFVIHQNRSKHGSTNFIPEQFLD 255 (431)
T ss_dssp CEEECCEEEEETTEEEEEEEECCCCHHHHHHHHHT-TCEEECCCSSC----GGGEEEEEEECSCCSCSSSSSSCCGGGSC
T ss_pred ceeeEEEEEecCCEeEEEEeCCCCCHHHHhhhhcc-ccceeeccccc----CCCceEEEEECCCccCCCccccCCHhHhh
Confidence 78889999999999999999999999999988865 35777776421 25799999999998766667889999999
Q ss_pred cCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEec
Q 006878 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILK 323 (627)
Q Consensus 244 ~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L~ 323 (627)
.++|||+|||+|.+++.+...+..+++++||||++++|++++|.++|+|++|+|+++.+++++|||+++|||++.+|+|+
T Consensus 256 ~~~Dyv~lGH~H~~~~~~~~~~~~~~~i~yPGS~~~~s~~e~E~~~k~~~lvei~~~~~~ve~i~l~~~R~f~~~~v~l~ 335 (431)
T 3t1i_A 256 DFIDLVIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQFFMEDIVLA 335 (431)
T ss_dssp TTCCEEEECSCCSCEEEEEECTTTCCEEEECCCSSCCSCCHHHHSCCEEEEEEEETTEEEEEEEECSSSCCEEEEEEEGG
T ss_pred CCCCEEEecccccccccccccCCCCEEEEeCCCCcccCcCcccCCCCEEEEEEEECCEEEEEEEECCCcceEEEEEEEEe
Confidence 99999999999999876544444568999999999999998777899999999999999999999999999999999999
Q ss_pred cCCCC----CCCCHhHHHHHHHHHHHHHHHHhhhccc-ccccCCCCeEEEEEeecc-ccccChhhhhhhhhhcccCccce
Q 006878 324 DEADI----DPDDQNSILEHLDKVVRNLIERSSKKTV-NRSELKLPLVRIKVDYSG-FMTINPQRFGQKYVGKVANPQDI 397 (627)
Q Consensus 324 ~~~~~----~~~~~~~i~~~l~~~v~~~i~~a~~~~~-~~~~~~~PLiRLrV~~sg-~~~~n~~rfg~~f~~~vaNp~di 397 (627)
+..++ .+++.++|.++|.++|++||++|++++. ...++++|||||||+||| |+++||+||||+|+|+||||+||
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~plirl~v~~~~~~~~~n~~rf~~~~~~~van~~d~ 415 (431)
T 3t1i_A 336 NHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDI 415 (431)
T ss_dssp GCTTTCCSSCTTHHHHHHHHHHHHHHHHHHHHHHHTTTCSSSCSSCEEEEEEECTTTCCCCCSHHHHHHHTTTCSCSSSS
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEEEecCCCCccCHHHHHHhhCCcccChHHe
Confidence 87542 3456789999999999999999987653 456889999999999998 99999999999999999999999
Q ss_pred EEEEecccc
Q 006878 398 LIFSKSSKK 406 (627)
Q Consensus 398 l~f~~~~~~ 406 (627)
|+|+|++++
T Consensus 416 ~~~~~~~~~ 424 (431)
T 3t1i_A 416 IHFFRHREQ 424 (431)
T ss_dssp EEEEC----
T ss_pred EEEEEecch
Confidence 999976543
No 4
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=100.00 E-value=1.1e-33 Score=298.11 Aligned_cols=284 Identities=26% Similarity=0.347 Sum_probs=197.0
Q ss_pred eEEEEEcCCCCCCCC-CchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 13 VRILVATDCHLGYME-KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 13 mKILh~SD~HLG~~~-~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
|||+|+||+|+|+.. ..+.|.++.+.+|+++++.|.+++||+||++|||||...|+..++..+.+.|+++.
T Consensus 1 mkilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~-------- 72 (333)
T 1ii7_A 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPK-------- 72 (333)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHH--------
T ss_pred CEEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHH--------
Confidence 899999999999864 34567788899999999999999999999999999999999888888888888762
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeE----
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV---- 167 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~---- 167 (627)
..++|||+|+||||.+.+. .+++++|+..|+|++++...-. .....+..
T Consensus 73 ------------------------~~~~~v~~v~GNHD~~~~~--~~~~~~l~~~g~v~vl~~~~~~-~~~~~~~~~~~~ 125 (333)
T 1ii7_A 73 ------------------------EHSIPVFAIEGNHDRTQRG--PSVLNLLEDFGLVYVIGMRKEK-VENEYLTSERLG 125 (333)
T ss_dssp ------------------------TTTCCEEEECCTTTCCSSS--CCHHHHHHHTTSCEECEEESSC-CCSSSEEEEECT
T ss_pred ------------------------HCCCcEEEeCCcCCCccCC--cCHHHHHHHcCCcEEecccccc-cccceeeecccC
Confidence 3478999999999998643 3567889999988888742100 00011111
Q ss_pred -EEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHh-hcChhhhhhhcCCCceEEEEEccCCCCCC---C--ccccccc
Q 006878 168 -YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQ-WMRPEAQEECQVSDWFNILVLHQNRVKTN---P--KNAINEH 240 (627)
Q Consensus 168 -~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~-~l~p~~~~~~~~~~~fnILv~Hq~~~~~~---~--~~~i~e~ 240 (627)
.|+++......+++||++|.....+.... ..+. .+. .+..||+++|+++.+.. . ...+...
T Consensus 126 ~~~~~~~~~~~~v~i~g~~~~~~~~~~~~~---~~l~~~~~---------~~~~~Ill~H~~~~~~~~~~~~~~~~~~~~ 193 (333)
T 1ii7_A 126 NGEYLVKGVYKDLEIHGMKYMSSAWFEANK---EILKRLFR---------PTDNAILMLHQGVREVSEARGEDYFEIGLG 193 (333)
T ss_dssp TSCEEEEEEETTEEEEEECCCCHHHHHSST---THHHHHCC---------CCSSEEEEEECCBHHHHHTTTCCCCSBCGG
T ss_pred CCceeeccCcCCEEEEecCCcCHHHHHHHH---HHHHHhhC---------CCCCeEEEEcCChhhcccccccccceecHH
Confidence 12222211146899999998765443210 0011 111 12359999999875321 1 1223344
Q ss_pred cCCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccC--------------CcCCCeEEEEEEeCCceEEEE
Q 006878 241 FLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEG--------------ESKPKHVLLLEIKENQYRPTK 306 (627)
Q Consensus 241 ~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~eg--------------E~~~Kgv~lveI~~~~~~~e~ 306 (627)
.++.++|||||||+|.++. +...+..++||||+.+++|+|. +..+|||++|+ .+++++
T Consensus 194 ~l~~~~dyvalGH~H~~q~----~~~~~~~i~ypGS~~~~~~~E~~~~~~~~G~~~~p~~~~~kg~~lv~----~~~~~~ 265 (333)
T 1ii7_A 194 DLPEGYLYYALGHIHKRYE----TSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVE----DFKPRF 265 (333)
T ss_dssp GSCTTCSEEEEESCSSCEE----EEETTEEEEECCCSSCCSGGGCSEEEEECSSSEEEEECCCCEEEEEE----TTEEEE
T ss_pred HCCccCCEEEcccccccee----cCCCCceEEEcCCCeecccchhccccccccccccccccCCCeEEEEe----cCceeE
Confidence 5667899999999999864 3322478999999999999974 23489999999 478999
Q ss_pred EECCCCCcEEEEEEEeccCCCCCCCCHhHHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEEEeecc
Q 006878 307 IPLTSVRPFEYTEIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPLVRIKVDYSG 374 (627)
Q Consensus 307 IpL~tvRpf~~~~i~L~~~~~~~~~~~~~i~~~l~~~v~~~i~~a~~~~~~~~~~~~PLiRLrV~~sg 374 (627)
+||++ |||+..++... .++ +.+.+++++.. ..+.+++||++++..
T Consensus 266 i~l~~-r~~~~~~i~~~---------~~~----l~~~~~~~~~~---------~~~~~~v~v~l~~~~ 310 (333)
T 1ii7_A 266 VEIKV-RPFIDVKIKGS---------EEE----IRKAIKRLIPL---------IPKNAYVRLNIGWRK 310 (333)
T ss_dssp EECCC-CCEEEEEEEEC---------HHH----HHHHHHHHGGG---------SCTTCEEEEEEEESS
T ss_pred EECCC-CceEEEEecCC---------HHH----HHHHHHHHhhc---------CCCCcEEEEEEEecC
Confidence 99998 99986665411 122 33334433221 124689999998764
No 5
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=100.00 E-value=6.7e-33 Score=298.20 Aligned_cols=279 Identities=21% Similarity=0.304 Sum_probs=193.6
Q ss_pred CCCCCceEEEEEcCCCCCCCCCc-hhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcC
Q 006878 7 EDIANTVRILVATDCHLGYMEKD-EIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLN 85 (627)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~d-~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g 85 (627)
+....+|||+|+||+|+|+...+ ..|..+.+.+|+++++.|.+++||+||++|||||...|+..++..++++|+++.
T Consensus 15 ~~~~~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~-- 92 (386)
T 3av0_A 15 VPRGSHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH-- 92 (386)
T ss_dssp ---CCCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH--
T ss_pred ccCCCCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH--
Confidence 44567899999999999976443 346677889999999999999999999999999999999888888888888762
Q ss_pred CCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce
Q 006878 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 86 ~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (627)
..++|||+|+||||.+......++..+|... +++|+.
T Consensus 93 ------------------------------~~~~pv~~v~GNHD~~~~~~~~~~~~~l~~~--v~~l~~----------- 129 (386)
T 3av0_A 93 ------------------------------ENNIKVYIVAGNHEMPRRLGEESPLALLKDY--VKILDG----------- 129 (386)
T ss_dssp ------------------------------HTTCEEEECCCGGGSCSSTTSCCGGGGGTTT--CEECSE-----------
T ss_pred ------------------------------hcCCcEEEEcCCCCCCccccccCHHHHHHHH--eEEcCC-----------
Confidence 3468999999999998755433444555443 555543
Q ss_pred eEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCcc-ccccccCCc
Q 006878 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKN-AINEHFLPR 244 (627)
Q Consensus 166 ~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~-~i~e~~lp~ 244 (627)
.++.+. ++..+.++|+++........+. ..+.++.+.. ..+.++|+++|++..+..+.. .+....++.
T Consensus 130 --~~v~~~-~~~~v~i~gl~~~~~~~~~~~~---~~l~~l~~~~-----~~~~~~Ill~H~~~~~~~~~~~~~~~~~l~~ 198 (386)
T 3av0_A 130 --KDVINV-NGEEIFICGTYYHKKSKREEML---DKLKNFESEA-----KNYKKKILMLHQGINPYIPLDYELEHFDLPK 198 (386)
T ss_dssp --EEEEEE-TTEEEEEEEECCCCSTTHHHHH---HHHHHHHHHH-----HTCSSEEEEECCCCTTTSSSSCSSCGGGSCC
T ss_pred --CcEEEe-CCCCEEEEeCCCCCHHHHHHHH---HHHHHhhhhc-----ccCCCEEEEECcCccccCCCCcccCHHHhhh
Confidence 123332 3467999999998654322221 1222232211 136799999999875432211 133334555
Q ss_pred CCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCc---CCCeEEEEEEeC---CceEEEEEECCCCCcEEEE
Q 006878 245 FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGES---KPKHVLLLEIKE---NQYRPTKIPLTSVRPFEYT 318 (627)
Q Consensus 245 ~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~---~~Kgv~lveI~~---~~~~~e~IpL~tvRpf~~~ 318 (627)
+|||++||+|.++. .+..+..++||||+.++++.|.+. .+|+|++|++++ +.++++++|+ ..||| .
T Consensus 199 -~d~v~~GH~H~~~~----~~~~~~~i~ypGS~~~~~~~e~~~~~~~~kg~~lv~i~~~~~~~~~v~~i~l-~~r~~--~ 270 (386)
T 3av0_A 199 -FSYYALGHIHKRIL----ERFNDGILAYSGSTEIIYRNEYEDYKKEGKGFYLVDFSGNDLDISDIEKIDI-ECREF--V 270 (386)
T ss_dssp -CSEEEECSCCSCEE----EECSSSEEEECCCSSCCSGGGTHHHHHHCSEEEEEECCSSSCCGGGEEEEEC-CCCCE--E
T ss_pred -CCeEEccCCCCCcc----ccCCCceEEECCcccccCcchhccccCCCCEEEEEEEecCcCCCceEEEEEC-Cccee--E
Confidence 99999999999743 222346899999999999975321 579999999998 6789999999 47998 5
Q ss_pred EEEeccCCCCCCCCHhHHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEEEe
Q 006878 319 EIILKDEADIDPDDQNSILEHLDKVVRNLIERSSKKTVNRSELKLPLVRIKVD 371 (627)
Q Consensus 319 ~i~L~~~~~~~~~~~~~i~~~l~~~v~~~i~~a~~~~~~~~~~~~PLiRLrV~ 371 (627)
++.+.+. +++. ++++++.+ ..+.++|||+|.
T Consensus 271 ~~~~~~~--------~~~~--------~~~~~~~~------~~~~~~v~l~l~ 301 (386)
T 3av0_A 271 EVNIKDK--------KSFN--------EAVNKIER------CKNKPVVFGKIK 301 (386)
T ss_dssp EEEECSH--------HHHH--------HHHHHHTS------SSSCCEEEEEEE
T ss_pred EEeCCCh--------hhHH--------HHHHHHHh------CCCCcEEEEEEE
Confidence 5555431 2332 22222211 245689999999
No 6
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=99.97 E-value=5.8e-31 Score=282.83 Aligned_cols=250 Identities=24% Similarity=0.337 Sum_probs=175.4
Q ss_pred eEEEEEcCCCCCCC----CCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCCChHHHHHHHHHHHHhhcCCC
Q 006878 13 VRILVATDCHLGYM----EKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLF-HENKPSRSTLVKAIEILRRHCLNDR 87 (627)
Q Consensus 13 mKILh~SD~HLG~~----~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLF-d~~~Ps~~tl~~~~~lLr~l~~g~~ 87 (627)
|||+|+||||+|.. ..+..+..+...+|+++++.+.+++||+||++|||| |...|+..++..+.+.|.++.
T Consensus 1 mrilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~---- 76 (379)
T 3tho_B 1 MKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM---- 76 (379)
T ss_dssp CEEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHH----
T ss_pred CeEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHH----
Confidence 89999999999997 555567778889999999999999999999999999 788899888887888887762
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhh--CCceeeccceeecCCCccce
Q 006878 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA--CNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~--~glVn~fg~~~l~~~~~~~i 165 (627)
.. +|||+|+||||... +.....+.. +..+.++..
T Consensus 77 ----------------------------~~-~~v~~i~GNHD~~~----~~~~~~~~~~~~~~~~~~~~----------- 112 (379)
T 3tho_B 77 ----------------------------RT-APVVVLPGNQDWKG----LKLFGNFVTSISSDITFVMS----------- 112 (379)
T ss_dssp ----------------------------HH-SCEEECCCTTSCTT----HHHHHHHHHTTCSSEEECCS-----------
T ss_pred ----------------------------hC-CCEEEEcCCCcccc----CccccccccccCCcceeecc-----------
Confidence 23 89999999999532 221222211 233333321
Q ss_pred eEEEEEEe-eCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhh----hhhcCCCceEEEEEccCCCCCCC-c-----
Q 006878 166 TVYPILIR-KGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQ----EECQVSDWFNILVLHQNRVKTNP-K----- 234 (627)
Q Consensus 166 ~~~Pill~-kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~----~~~~~~~~fnILv~Hq~~~~~~~-~----- 234 (627)
..|+.+. ..+..+.+||++|.........+.. ....|+..... ... ..+.++|+++|+.+.+..+ .
T Consensus 113 -~~~v~l~~~~G~~v~i~glp~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~-~~~~~~I~l~H~~v~g~~~~~~se~~ 189 (379)
T 3tho_B 113 -FEPVDVEAKRGQKVRILPFPYPDESEALRKNEG-DFRFFLESRLNKLYEEAL-KKEDFAIFMGHFTVEGLAGYAGIEQG 189 (379)
T ss_dssp -SCCEEEECTTCCEEEEEEECCCCCC----CHHH-HHHHHHHHHHHHHHHHHH-TCSSEEEEEEESCBSCCCC-------
T ss_pred -cceEEEEcCCCCEEEEEECCCCCHHHHhhhhcc-chHHHHHHHHHHHHHHhc-CCCCCeEEEEeccccCCccCCCCccc
Confidence 1344554 3345899999999864332211110 11122211110 001 2577999999999876433 1
Q ss_pred --cccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCc-eEEEEEECCC
Q 006878 235 --NAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQ-YRPTKIPLTS 311 (627)
Q Consensus 235 --~~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~-~~~e~IpL~t 311 (627)
..++..+++.++|||++||+|.+ +.+.+ +.+++||||+++++|+| +..+|+|++|++++++ +++++|| ..
T Consensus 190 ~~~~v~~~~~~~~~dyvalGH~H~~----q~~~~-~~~i~y~GS~~~~~f~E-~~~~k~~~lv~~~~~~~~~v~~i~-~~ 262 (379)
T 3tho_B 190 REIIINRALIPSVVDYAALGHIHSF----REIQK-QPLTIYPGSLIRIDFGE-EADEKGAVFVELKRGEPPRYERID-AS 262 (379)
T ss_dssp CSCCBCGGGSCTTSSEEEEESCSSC----EEEEE-TTEEEECCCSSCCSGGG-SSSCCEEEEEECCSSSCCEEEEEE-CC
T ss_pred cccccCHHHcCcCCCEEEcccccCC----eEeCC-CCcEEecCCCCCCCccc-ccCCCEEEEEEEcCCCcceEEEeC-CC
Confidence 23456677888999999999997 44443 25899999999999986 3468999999998754 7999999 77
Q ss_pred CCcEEEEEE
Q 006878 312 VRPFEYTEI 320 (627)
Q Consensus 312 vRpf~~~~i 320 (627)
.|||...++
T Consensus 263 ~r~~~~~~~ 271 (379)
T 3tho_B 263 PLPLKTLYY 271 (379)
T ss_dssp CCCEEEEEC
T ss_pred CeeeEEEEc
Confidence 899986665
No 7
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=99.97 E-value=1.4e-30 Score=274.21 Aligned_cols=259 Identities=22% Similarity=0.262 Sum_probs=174.4
Q ss_pred CCCceEEEEEcCCCCC----CCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCC-CCCCCCCChHHHHHHHHHHHHhh
Q 006878 9 IANTVRILVATDCHLG----YMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGD-LFHENKPSRSTLVKAIEILRRHC 83 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG----~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGD-LFd~~~Ps~~tl~~~~~lLr~l~ 83 (627)
...+|||+|+|||||| ....+..|.++...+|+++++.|++++||+||++|| |||...|+..++..+.++|+++.
T Consensus 15 ~~~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~ 94 (336)
T 2q8u_A 15 NLKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM 94 (336)
T ss_dssp TCCEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHH
T ss_pred ecCceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999 444455677888899999999999999999999999 99999999888888888888762
Q ss_pred cCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCC-ceeeccceeecCCCc
Q 006878 84 LNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN-LVNYFGKMVLGGSGV 162 (627)
Q Consensus 84 ~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~g-lVn~fg~~~l~~~~~ 162 (627)
.. +|||+|+||||.+. .. ....++...| ++++++...
T Consensus 95 --------------------------------~~-~pv~~i~GNHD~~~-~~--~~~~~l~~~g~nv~v~~~~~------ 132 (336)
T 2q8u_A 95 --------------------------------RT-APVVVLPGNHDWKG-LK--LFGNFVTSISSDITFVMSFE------ 132 (336)
T ss_dssp --------------------------------HH-SCEEECCC-------CH--HHHHHHHHHCSSEEECCSSS------
T ss_pred --------------------------------hc-CCEEEECCCCCccc-cc--cHHHHHHhcCCEEEEEeccc------
Confidence 22 89999999999876 32 2234555554 466665421
Q ss_pred cceeEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcCh--hHHhhcChhhhhhhcCCCceEEEEEccCCCCCCC---c---
Q 006878 163 GEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTP--HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNP---K--- 234 (627)
Q Consensus 163 ~~i~~~Pill~kg~~~valyGl~~i~derl~~~f~~~--~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~---~--- 234 (627)
.+ .|+.+. ...+.+||++|.....+...+... ..+.++...........+.++|+++|++..+... .
T Consensus 133 -~~--~~~~~~--~~~v~i~glp~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ill~H~~~~~~~~~~~~~~~ 207 (336)
T 2q8u_A 133 -PV--DVEAKR--GQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQG 207 (336)
T ss_dssp -CE--EEECTT--SCEEEEEEECCC-------CCSSHHHHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC--------
T ss_pred -cc--CceEEe--CCCEEEEECCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCCEEEEECccccCCCCCCCccch
Confidence 11 133332 346999999998754332211100 0122221111000001467899999998765321 1
Q ss_pred --cccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCC-ceEEEEEECCC
Q 006878 235 --NAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKEN-QYRPTKIPLTS 311 (627)
Q Consensus 235 --~~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~-~~~~e~IpL~t 311 (627)
..++..+++.++|||++||+|.++.. .+ +..++||||+.+++++|. ..+|+|++|+++++ .++++++|+..
T Consensus 208 ~~~~v~~~l~~~~~d~v~~GH~H~~~~~----~~-~~~i~y~GS~~~~s~~e~-~~~~~~~lv~i~~~~~~~v~~i~~~~ 281 (336)
T 2q8u_A 208 REIIINRALIPSVVDYAALGHIHSFREI----QK-QPLTIYPGSLIRIDFGEE-ADEKGAVFVELKRGEPPRYERIDASP 281 (336)
T ss_dssp CCCEECGGGSCTTSSEEEEESCSSCEEE----EE-TTEEEECCCSSCCSGGGT-TCCCEEEEEEEETTSCCEEEEEECCC
T ss_pred hhcccCHHHccccCCEEEEccccCceEe----CC-CccEEECCCCcCCCcccc-CCCCEEEEEEEeCCCccEEEEEECCC
Confidence 12445667778999999999998543 22 258999999999999852 34899999999976 48999999998
Q ss_pred CCcEEEEEEE
Q 006878 312 VRPFEYTEII 321 (627)
Q Consensus 312 vRpf~~~~i~ 321 (627)
|||...++.
T Consensus 282 -r~~~~~~~~ 290 (336)
T 2q8u_A 282 -LPLKTLYYK 290 (336)
T ss_dssp -CCEEEEEEE
T ss_pred -EEEEEeecc
Confidence 999877763
No 8
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.79 E-value=3.8e-19 Score=178.93 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccc
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~ 90 (627)
|||+|+||+|++..........+...+|+++++.+.+. ++|+||++|||++...+ ..+..+.++|++
T Consensus 1 mri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~--------- 69 (274)
T 3d03_A 1 MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRP--EEYQVARQILGS--------- 69 (274)
T ss_dssp CEEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCH--HHHHHHHHHHTT---------
T ss_pred CEEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHh---------
Confidence 79999999999964332222256678899999999886 68999999999997643 333334444332
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEEEE
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVYPI 170 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pi 170 (627)
.++|+++|+||||.... ....|... |+... . ..+... .
T Consensus 70 --------------------------l~~p~~~v~GNHD~~~~-----~~~~~~~~----~~~~~---~-~~~~~~---~ 107 (274)
T 3d03_A 70 --------------------------LNYPLYLIPGNHDDKAL-----FLEYLQPL----CPQLG---S-DANNMR---C 107 (274)
T ss_dssp --------------------------CSSCEEEECCTTSCHHH-----HHHHHGGG----SGGGC---S-CGGGCC---E
T ss_pred --------------------------cCCCEEEECCCCCCHHH-----HHHHhhhh----hcCcc---c-CCCceE---E
Confidence 35899999999998531 11223221 11000 0 000000 1
Q ss_pred EEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCc--c--cc-c----ccc
Q 006878 171 LIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK--N--AI-N----EHF 241 (627)
Q Consensus 171 ll~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~--~--~i-~----e~~ 241 (627)
.+..+ .+.++|+...........+. ...++|+...... ..+...|+++|++....... + .+ . ..+
T Consensus 108 ~~~~~--~~~~i~ld~~~~~~~~~~~~-~~~~~wl~~~l~~---~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~l~~~ 181 (274)
T 3d03_A 108 AVDDF--ATRLLFIDSSRAGTSKGWLT-DETISWLEAQLFE---GGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLAL 181 (274)
T ss_dssp EECSS--SSEEEECCCCCTTCSSBCCC-HHHHHHHHHHHHH---HTTSCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHH
T ss_pred EEEeC--CEEEEEEeCCCCCCCCCeeC-HHHHHHHHHHHHh---CCCCCEEEEECCCCcccCCcccCcccCcCHHHHHHH
Confidence 12222 36677776542111000011 1234555432211 13567999999987543210 0 00 0 122
Q ss_pred CC-c-CCCEEEcCCccccccCCeecCCCCceEecCCCcccccccc------CCcCCCeEEEEEEeCCceEEEEEEC---C
Q 006878 242 LP-R-FLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIE------GESKPKHVLLLEIKENQYRPTKIPL---T 310 (627)
Q Consensus 242 lp-~-~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~e------gE~~~Kgv~lveI~~~~~~~e~IpL---~ 310 (627)
+. . .+|+|++||+|..+.. ...+ ...+++|||..+..+.. ....+++|.+++++++.+.++.+++ .
T Consensus 182 l~~~~~v~~vl~GH~H~~~~~--~~~g-~~~~~~pg~~~~~~~~~~~~~~~~~~~~~gy~i~~i~~~~~~~~~~~~~~~~ 258 (274)
T 3d03_A 182 VERFPSLTRIFCGHNHSLTMT--QYRQ-ALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYA 258 (274)
T ss_dssp HHHCTTEEEEEECSSSSCEEE--EETT-EEEEECCCSSCBCCCCSSCCSCEEBCCCCEEEEEEEETTEEEEEEEECSCCS
T ss_pred HHhCCCceEEEeCCCCCchhh--eECC-EEEEEcCCcceeeccCCCccccccccCCCceEEEEEeCCcEEEEEEecCCCC
Confidence 32 2 5899999999998652 2222 25788999987654321 1235789999999998888887777 3
Q ss_pred CCCcEE
Q 006878 311 SVRPFE 316 (627)
Q Consensus 311 tvRpf~ 316 (627)
.++||.
T Consensus 259 ~~~~f~ 264 (274)
T 3d03_A 259 GPWLYD 264 (274)
T ss_dssp CCEECC
T ss_pred CCCCcc
Confidence 445554
No 9
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.79 E-value=1.5e-18 Score=179.49 Aligned_cols=243 Identities=16% Similarity=0.159 Sum_probs=141.0
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHH--cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcC
Q 006878 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ--KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLN 85 (627)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~--~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g 85 (627)
.....|||+|+||+|++..........+....|+++++.+.+ .++|+||++|||++...+ ..+..+.++|+.+.
T Consensus 21 ~~~~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~l~-- 96 (330)
T 3ib7_A 21 HPRPDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEP--AAYRKLRGLVEPFA-- 96 (330)
T ss_dssp SCCCSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCH--HHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHHHH--
Confidence 345679999999999987654333344678889999999988 899999999999998754 44455556665541
Q ss_pred CCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce
Q 006878 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 86 ~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (627)
...++|||+|+||||.... ....+..... .++..
T Consensus 97 -----------------------------~~~~~pv~~v~GNHD~~~~-----~~~~~~~~~~--~~~~~---------- 130 (330)
T 3ib7_A 97 -----------------------------AQLGAELVWVMGNHDDRAE-----LRKFLLDEAP--SMAPL---------- 130 (330)
T ss_dssp -----------------------------HHHTCEEEECCCTTSCHHH-----HHHHHHCCCC--CCSCC----------
T ss_pred -----------------------------hhcCCCEEEeCCCCCCHHH-----HHHHhccccc--ccCCc----------
Confidence 0236899999999997421 1111211110 00000
Q ss_pred eEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCc--cc-------
Q 006878 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK--NA------- 236 (627)
Q Consensus 166 ~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~--~~------- 236 (627)
...+..++ +.++++...........+ ....++|+...... ......|+++|+........ ..
T Consensus 131 ---~~~~~~~~--~~~i~lds~~~~~~~~~~-~~~q~~wl~~~l~~---~~~~~~iv~~Hh~p~~~~~~~~~~~~~~~~~ 201 (330)
T 3ib7_A 131 ---DRVCMIDG--LRIIVLDTSVPGHHHGEI-RASQLGWLAEELAT---PAPDGTILALHHPPIPSVLDMAVTVELRDQA 201 (330)
T ss_dssp ---CEEEEETT--EEEEECCCCCTTCCSBCC-CHHHHHHHHHHTTS---CCTTCEEEECSSCSSCCSSGGGGGGSBSCHH
T ss_pred ---ceEEEeCC--EEEEEecCCCCCCCCCcc-CHHHHHHHHHHHHh---cccCCeEEEEECCCCCCCccccccccccCHH
Confidence 01112222 333344322100000000 00224444332211 12334899999976543211 00
Q ss_pred -cccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCCcccccc-------ccCCcCCCeEEEEEEeCCceEEEEEE
Q 006878 237 -INEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSL-------IEGESKPKHVLLLEIKENQYRPTKIP 308 (627)
Q Consensus 237 -i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~-------~egE~~~Kgv~lveI~~~~~~~e~Ip 308 (627)
+.+-+....+|+|++||+|..... ... +..+++|||+....- ..++..+++|.+|+++++++.++.++
T Consensus 202 ~l~~~l~~~~v~~v~~GH~H~~~~~--~~~--g~~~~~~gs~~~~~~~~~~~g~~~~~~~~~gy~iv~i~~~~~~~~~v~ 277 (330)
T 3ib7_A 202 ALGRVLRGTDVRAILAGHLHYSTNA--TFV--GIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIP 277 (330)
T ss_dssp HHHHHHTTSSEEEEEECSSSSCEEE--EET--TEEEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHhccCceEEEECCCCCcccc--eEC--CEEEEecCcceeccCCCCCCcceeccCCCCceEEEEEECCCeEEEEec
Confidence 111122347999999999998642 232 467788888753111 01124578999999999999999999
Q ss_pred CCCCC
Q 006878 309 LTSVR 313 (627)
Q Consensus 309 L~tvR 313 (627)
+....
T Consensus 278 ~~~~~ 282 (330)
T 3ib7_A 278 LGGGE 282 (330)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 87533
No 10
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=99.75 E-value=8.2e-18 Score=164.33 Aligned_cols=201 Identities=16% Similarity=0.220 Sum_probs=115.3
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
+|||+|+||+|+++ ..|+++++.+.++++|+||++|||++...+ ...+..+++.|+
T Consensus 5 ~mri~~iSD~H~~~------------~~~~~~~~~~~~~~~D~vi~~GDl~~~~~~-~~~~~~~~~~l~----------- 60 (228)
T 1uf3_A 5 VRYILATSNPMGDL------------EALEKFVKLAPDTGADAIALIGNLMPKAAK-SRDYAAFFRILS----------- 60 (228)
T ss_dssp CCEEEEEECCTTCH------------HHHHHHHTHHHHHTCSEEEEESCSSCTTCC-HHHHHHHHHHHG-----------
T ss_pred eEEEEEEeeccCCH------------HHHHHHHHHHhhcCCCEEEECCCCCCCCCC-HHHHHHHHHHHH-----------
Confidence 59999999999973 457888998888899999999999987643 333333444332
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhh--------CCceeeccceeecCCCcc
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSA--------CNLVNYFGKMVLGGSGVG 163 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~--------~glVn~fg~~~l~~~~~~ 163 (627)
..++|||+|+||||.+.. +.+.. ++.....+.
T Consensus 61 ------------------------~~~~pv~~v~GNHD~~~~-------~~~~~~~~~~~~~~~~~~l~~~--------- 100 (228)
T 1uf3_A 61 ------------------------EAHLPTAYVPGPQDAPIW-------EYLREAANVELVHPEMRNVHET--------- 100 (228)
T ss_dssp ------------------------GGCSCEEEECCTTSCSHH-------HHHHHHHHHHHHCTTEEECBTS---------
T ss_pred ------------------------hcCCcEEEECCCCCchhH-------HHHHhhhhhhccCcceEEcccc---------
Confidence 235899999999998642 12221 122111111
Q ss_pred ceeEEEEEEeeCCeeEEEEecCCCC-------HHHHHhh--hcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCc
Q 006878 164 EITVYPILIRKGSTAVALYGLGNIR-------DERLNRM--FQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPK 234 (627)
Q Consensus 164 ~i~~~Pill~kg~~~valyGl~~i~-------derl~~~--f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~ 234 (627)
.+.+. ..+.++|+++.. ++.+.+. +......+|+.. ..+..+|+++|++.......
T Consensus 101 -----~~~~~---~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~il~~H~p~~~~~~~ 165 (228)
T 1uf3_A 101 -----FTFWR---GPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWE-------LKDYPKIFLFHTMPYHKGLN 165 (228)
T ss_dssp -----EEEET---TTEEEEEECSEEESSSCCBSSSSCEEEHHHHHHHHGGGGG-------SCSCCEEEEESSCBCBTTTB
T ss_pred -----eEeeC---CCcEEecCCCCcCCCCccChhhcccchhhhHHHHHHHHHh-------CCCCCeEEEEccCcccCCcc
Confidence 11111 135666765321 1111000 000000122221 12347999999986542110
Q ss_pred ----cccccccC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEEC
Q 006878 235 ----NAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPL 309 (627)
Q Consensus 235 ----~~i~e~~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL 309 (627)
..+ ..++ ...+|+|++||+|.. . ... + +..+++|||.. +.+++++++++ .+++.+.+
T Consensus 166 ~~~~~~~-~~~~~~~~~~~~~~GH~H~~-~--~~~-~-~~~~in~Gs~~----------~~~~~i~~~~~--~~~~~~~v 227 (228)
T 1uf3_A 166 EQGSHEV-AHLIKTHNPLLVLVAGKGQK-H--EML-G-ASWVVVPGDLS----------EGEYSLLDLRA--RKLETGNV 227 (228)
T ss_dssp TTSBHHH-HHHHHHHCCSEEEECCSSCE-E--EEE-T-TEEEEECCBGG----------GTEEEEEETTT--TEEEEEEC
T ss_pred ccCHHHH-HHHHHHhCCCEEEEcccccC-c--ccc-C-CceEEEecccC----------CCceEEEEecc--eEeeeccc
Confidence 001 1122 246899999999933 2 222 2 46789999863 45899999875 56666554
No 11
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=99.72 E-value=3.9e-17 Score=163.68 Aligned_cols=213 Identities=10% Similarity=0.184 Sum_probs=116.8
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCh--------------HH-----
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSR--------------ST----- 71 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~--------------~t----- 71 (627)
.+|||+|+||+|+++ ..|+++++.+.+.++|+||++|||++...++. ..
T Consensus 4 ~~mri~~iSDlH~~~------------~~~~~~l~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 71 (260)
T 2yvt_A 4 MPRKVLAIKNFKERF------------DLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENE 71 (260)
T ss_dssp CCCEEEEEECCTTCG------------GGHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHH
T ss_pred ceEEEEEEeecCCCh------------HHHHHHHHHHHhcCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHH
Confidence 369999999999984 24788888888899999999999999753311 00
Q ss_pred ---HHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCc
Q 006878 72 ---LVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNL 148 (627)
Q Consensus 72 ---l~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~gl 148 (627)
...+.++|+.+. ..++|||+|+||||.+... ...+.+...+.
T Consensus 72 ~~~~~~~~~~l~~l~--------------------------------~~~~pv~~v~GNHD~~~~~---~~~~~~~~~~~ 116 (260)
T 2yvt_A 72 HYIIETLDKFFREIG--------------------------------ELGVKTFVVPGKNDAPLKI---FLRAAYEAETA 116 (260)
T ss_dssp HHHHHHHHHHHHHHH--------------------------------TTCSEEEEECCTTSCCHHH---HHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH--------------------------------hcCCcEEEEcCCCCchhhh---hHHHHhhhccC
Confidence 012333333331 2368999999999986421 01134443331
Q ss_pred ---eeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCC------HHHHHhhhcChhHHhhcChhhhhhhcCCCce
Q 006878 149 ---VNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIR------DERLNRMFQTPHAVQWMRPEAQEECQVSDWF 219 (627)
Q Consensus 149 ---Vn~fg~~~l~~~~~~~i~~~Pill~kg~~~valyGl~~i~------derl~~~f~~~~~v~~l~p~~~~~~~~~~~f 219 (627)
+.++.. . ..+..+ .+.++|+++.. ++.+.+. ..-....++ +... ...+..
T Consensus 117 ~~~~~~l~~-------------~-~~~~~~--~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~~~l-~~l~---~~~~~~ 175 (260)
T 2yvt_A 117 YPNIRVLHE-------------G-FAGWRG--EFEVIGFGGLLTEHEFEEDFVLKY-PRWYVEYIL-KFVN---ELKPRR 175 (260)
T ss_dssp CTTEEECSS-------------E-EEEETT--TEEEEEECSEEESSCCBSSSSCEE-EHHHHHHHG-GGGG---GSCCCE
T ss_pred CcceEEecC-------------c-ceEEEC--CEEEEecCCCcCCCCcCHHHHhhc-chhhHHHHH-HHHH---hcCCCC
Confidence 111111 0 012223 36677777532 1111000 000000122 1110 012457
Q ss_pred EEEEEccCCCCCCC-c---c--ccc----cccC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcC
Q 006878 220 NILVLHQNRVKTNP-K---N--AIN----EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESK 288 (627)
Q Consensus 220 nILv~Hq~~~~~~~-~---~--~i~----e~~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~ 288 (627)
+|+++|++...... . . ... ..++ ...+|+|++||+| ..+ ... + +..+++|||...
T Consensus 176 ~Il~~H~pp~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~vl~GH~H-~~~--~~~-~-~~~~in~Gs~~~--------- 241 (260)
T 2yvt_A 176 LVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVG-KGH--ELV-G-NTIVVNPGEFEE--------- 241 (260)
T ss_dssp EEEEESSCCSCSSTTCBTTBSCCCSCHHHHHHHHHHCCSEEEECSSC-CEE--EEE-T-TEEEEECCBGGG---------
T ss_pred EEEEECCCccccccccCcccccccCcHHHHHHHHHhCCCEEEECCcc-CCc--EEe-C-CEEEEeCCCCCC---------
Confidence 89999997543100 0 0 000 0112 2368999999999 432 223 2 367899999642
Q ss_pred CCeEEEEEEeCCceEEEE
Q 006878 289 PKHVLLLEIKENQYRPTK 306 (627)
Q Consensus 289 ~Kgv~lveI~~~~~~~e~ 306 (627)
.++.+|+++++.+++..
T Consensus 242 -g~~~ii~~~~~~~~~~~ 258 (260)
T 2yvt_A 242 -GRYAFLDLTQHKIKLEQ 258 (260)
T ss_dssp -TEEEEEETTTTEEEEEE
T ss_pred -CceEEEEEcCCEEEeee
Confidence 18999999887665543
No 12
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=99.66 E-value=4.4e-16 Score=151.19 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=51.8
Q ss_pred cCCCEEEcCCccccccCCeecCCCCceEecCCCccc-cccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEe
Q 006878 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-TSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIIL 322 (627)
Q Consensus 244 ~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~-ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L 322 (627)
..+|++++||+|.+... .. .+..+++|||... ....+ ...+++|++++++++.++++.+++...+ +....++.
T Consensus 116 ~~~d~vi~GHtH~~~~~--~~--~~~~~inpGS~~~~~~~~~-~~~~~~y~il~~~~~~~~~~~~~~~~~~-~~v~~~~~ 189 (192)
T 1z2w_A 116 FDVDILISGHTHKFEAF--EH--ENKFYINPGSATGAYNALE-TNIIPSFVLMDIQASTVVTYVYQLIGDD-VKVERIEY 189 (192)
T ss_dssp HSSSEEECCSSCCCEEE--EE--TTEEEEECCCTTCCCCSSC-SCCCCEEEEEEEETTEEEEEEEEEETTE-EEEEEEEE
T ss_pred cCCCEEEECCcCcCccE--eE--CCEEEEECCcccccCCCCC-cCCCCcEEEEEEECCEEEEEEEEccCCE-EEEEEEEE
Confidence 46899999999997642 22 2478999999853 22212 2346899999999988999999997644 44444443
No 13
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=99.66 E-value=8.2e-16 Score=152.26 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=63.0
Q ss_pred ceEEEEEccCCCCCC-CccccccccC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCccc-cccccCCcCCCeEEE
Q 006878 218 WFNILVLHQNRVKTN-PKNAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-TSLIEGESKPKHVLL 294 (627)
Q Consensus 218 ~fnILv~Hq~~~~~~-~~~~i~e~~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~-ts~~egE~~~Kgv~l 294 (627)
.++|+++|+...... ....+. .++ ...+|++++||+|.+... .. .+..+++|||... ....+ ...+++|++
T Consensus 113 ~~~i~l~Hg~~~~~~~~~~~l~-~~~~~~~~d~vl~GHtH~~~~~--~~--~~~~~inpGS~~~~~~~~~-~~~~~~y~i 186 (215)
T 2a22_A 113 EFKIGLMHGNQVLPWDDPGSLE-QWQRRLDCDILVTGHTHKLRVF--EK--NGKLFLNPGTATGAFSALT-PDAPPSFML 186 (215)
T ss_dssp TEEEEEECSTTSSSTTCHHHHH-HHHHHHTCSEEEECSSCCCEEE--EE--TTEEEEECCCSSCCCCTTS-TTCCCEEEE
T ss_pred CeEEEEEcCCccCCCCCHHHHH-HHHhhcCCCEEEECCcCCCccE--ee--CCEEEEECCcccccCCCCC-CCCCCcEEE
Confidence 468999997542211 001111 111 246899999999997642 22 2478999999853 22222 234689999
Q ss_pred EEEeCCceEEEEEECCCCCcEEEEEEEe
Q 006878 295 LEIKENQYRPTKIPLTSVRPFEYTEIIL 322 (627)
Q Consensus 295 veI~~~~~~~e~IpL~tvRpf~~~~i~L 322 (627)
++++++.++++.+++..- .+.+..++.
T Consensus 187 l~i~~~~i~~~~~~~~~~-~~~v~~~~~ 213 (215)
T 2a22_A 187 MALQGNKVVLYVYDLRDG-KTNVAMSEF 213 (215)
T ss_dssp EEEETTEEEEEEEEEETT-EEEEEEEEE
T ss_pred EEEeCCcEEEEEEEecCC-eEEEEEEEe
Confidence 999998999999999863 355555543
No 14
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=99.64 E-value=3.8e-15 Score=161.60 Aligned_cols=248 Identities=18% Similarity=0.167 Sum_probs=134.9
Q ss_pred CCCceEEEEEcCCCCCCCCC---ch-----------hchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHH
Q 006878 9 IANTVRILVATDCHLGYMEK---DE-----------IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVK 74 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~---d~-----------~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~ 74 (627)
...+|||+|+||+|++.... +. .........|+.+++.+.+.+||+||++|||++...+ .....
T Consensus 36 ~~~~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~ 113 (443)
T 2xmo_A 36 KDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEK--TSHEE 113 (443)
T ss_dssp SCCCEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHHTCSEEEEESCCBSSCCH--HHHHH
T ss_pred CCCCeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCH--HHHHH
Confidence 45679999999999985421 00 0112356789999999999999999999999987653 23444
Q ss_pred HHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCc------------chH---
Q 006878 75 AIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDN------------LSA--- 139 (627)
Q Consensus 75 ~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~------------ls~--- 139 (627)
+.+.|+.+. ..++||++|+||||....... +++
T Consensus 114 ~~~~l~~l~--------------------------------~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (443)
T 2xmo_A 114 LAKKLTQVE--------------------------------KNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDF 161 (443)
T ss_dssp HHHHHHHHH--------------------------------HTTCEEEEECCTTTSSCTTCEEEETTEEEECCCCCHHHH
T ss_pred HHHHHHHHH--------------------------------hCCCeEEEECCcCCCCCccccccCCcccccccccCHHHH
Confidence 555665541 246899999999998653211 001
Q ss_pred HHHhhhCCceeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCCHH--HH------HhhhcChhHHhhcChhhhh
Q 006878 140 VDILSACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDE--RL------NRMFQTPHAVQWMRPEAQE 211 (627)
Q Consensus 140 ldiL~~~glVn~fg~~~l~~~~~~~i~~~Pill~kg~~~valyGl~~i~de--rl------~~~f~~~~~v~~l~p~~~~ 211 (627)
..++...|+...+... .....+ .....+ .+.|+|+...... .. ...+. ...+.|+......
T Consensus 162 ~~~~~~~~~~~~~~~~------~~~~~y--~~~~~~--~~~~i~Lds~~~~~~~~~~~~~~~g~~~-~~ql~wL~~~L~~ 230 (443)
T 2xmo_A 162 SKIYSDFGYEDAISSD------EFSLSY--LAAPSS--KVWLLMLDTAIYKTNMQQGNPTTEGGLT-AGTLDWIKESSAL 230 (443)
T ss_dssp HHHTCCCCCTTCSEEC------SSSSCE--EECSBS--SEEEEECCCBCCTTHHHHTSCCCCBCCC-HHHHHHHHHHHHH
T ss_pred HHHhhhcChhhhhccC------CCCceE--EEecCC--CEEEEEeeCCCcCcccccCCCCcCCccC-HHHHHHHHHHHHH
Confidence 1111111111110000 000000 011122 3555555432110 00 00000 1234455432111
Q ss_pred hhcCCCceEEEEEccCCCCCCCc---cc-cc-----cccC-CcCCCEEEcCCccccccCCee-cCCCCceEecCCCcccc
Q 006878 212 ECQVSDWFNILVLHQNRVKTNPK---NA-IN-----EHFL-PRFLDFVVWGHEHECLIDPQE-VPGMGFHLTQPGSSVAT 280 (627)
Q Consensus 212 ~~~~~~~fnILv~Hq~~~~~~~~---~~-i~-----e~~l-p~~~DyVa~GH~H~~~i~pq~-~~~~~~~i~ypGS~v~t 280 (627)
.+..+...|+++|++....... .+ +. ..++ ...+|++++||+|........ ..+.+...+.+||...
T Consensus 231 -~~~~~~~~Iv~~H~p~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~lvl~GH~H~~~~~~~~~~~g~~~~~i~~gs~~~- 308 (443)
T 2xmo_A 231 -AKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV- 308 (443)
T ss_dssp -HHHTTCEEEEECSSBSSCSSCC--CCSBCTTHHHHHHHHHHTTCCEEEECSSCSCEEEEEECTTSCEEEEEECCCTTS-
T ss_pred -HHHcCCeEEEEECCCCcccccccccccccccHHHHHHHHHHcCCeEEEECCcccCchhhcccCCCCceEEEEcCcccc-
Confidence 1123567899999987643210 00 10 1122 236999999999997653211 1223367788888532
Q ss_pred ccccCCcCCCeEEEEEEeCCc--eEEEEEECC
Q 006878 281 SLIEGESKPKHVLLLEIKENQ--YRPTKIPLT 310 (627)
Q Consensus 281 s~~egE~~~Kgv~lveI~~~~--~~~e~IpL~ 310 (627)
.+.++.+++++++. ++++.+.+.
T Consensus 309 -------~p~~y~il~i~~~~~~~~~~~~~l~ 333 (443)
T 2xmo_A 309 -------FPHKYGNITYSAKNKNFTYQSQKLD 333 (443)
T ss_dssp -------TTCEEEEEEEETTTTEEEEEEEECC
T ss_pred -------CCCCeEEEEEeCCCceEEEEEEEEe
Confidence 36799999999876 566666554
No 15
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=99.60 E-value=5e-15 Score=142.95 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=42.2
Q ss_pred cCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEEC
Q 006878 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPL 309 (627)
Q Consensus 244 ~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL 309 (627)
..+|++++||+|.+... .. .+..+++|||... .+|++++++++.++++.++|
T Consensus 127 ~~~d~vi~GHtH~~~~~--~~--~~~~~iNpGS~~~----------~sy~il~~~~~~~~~~~~~l 178 (178)
T 2kkn_A 127 EKPQVILFGHTHEPEDT--VK--AGVRFLNPGSLAE----------GSYAVLELDGGEVRFELKTL 178 (178)
T ss_dssp SCCSEEECCSCSSCCEE--EE--TTEEEECCCCTTT----------TEEEEEEEETTEEEEEEEEC
T ss_pred cCCCEEEECccCCCCeE--Ee--CCEEEEECCCCCC----------CeEEEEEECCCEEEEEEEeC
Confidence 56899999999998652 33 2478999999743 68999999998899998875
No 16
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=99.54 E-value=6.8e-14 Score=142.80 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCceEEEEEcCCCCCCCCCch-------hchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC----hHHHHHHHHH
Q 006878 10 ANTVRILVATDCHLGYMEKDE-------IRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS----RSTLVKAIEI 78 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~-------~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps----~~tl~~~~~l 78 (627)
...|||+|+||+|++...... ....+....++++++.+.+.++|+||++|||++...+. ...+..+++.
T Consensus 3 ~~~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~ 82 (322)
T 2nxf_A 3 DPVFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAE 82 (322)
T ss_dssp CCSEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHH
T ss_pred CCceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHH
Confidence 356999999999999743211 22345667899999999889999999999999875311 2333334444
Q ss_pred HHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 79 Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
|++ .++||++|+||||..
T Consensus 83 l~~-----------------------------------~~~p~~~v~GNHD~~ 100 (322)
T 2nxf_A 83 LDA-----------------------------------CSVDVHHVWGNHEFY 100 (322)
T ss_dssp HHT-----------------------------------TCSEEEECCCHHHHH
T ss_pred HHh-----------------------------------cCCcEEEecCCCCcc
Confidence 432 358999999999984
No 17
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=99.54 E-value=2.1e-14 Score=139.86 Aligned_cols=165 Identities=18% Similarity=0.286 Sum_probs=102.2
Q ss_pred CCC-ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 006878 9 IAN-TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (627)
Q Consensus 9 ~~~-~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~ 87 (627)
..+ +|||+++||+| |. +.+|+++++.+.+.++|+|+++||+++ | .+++.|++
T Consensus 21 ~~~g~m~i~~iSD~H-g~-----------~~~l~~~l~~~~~~~~D~ii~~GDl~~---~------~~~~~l~~------ 73 (190)
T 1s3l_A 21 YFQGHMKIGIMSDTH-DH-----------LPNIRKAIEIFNDENVETVIHCGDFVS---L------FVIKEFEN------ 73 (190)
T ss_dssp -----CEEEEECCCT-TC-----------HHHHHHHHHHHHHSCCSEEEECSCCCS---T------HHHHHGGG------
T ss_pred hhcCCeEEEEEeeCC-CC-----------HHHHHHHHHHHhhcCCCEEEECCCCCC---H------HHHHHHHh------
Confidence 344 59999999999 31 457889999998899999999999996 2 23343332
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeE
Q 006878 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (627)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~ 167 (627)
.++||++|+||||.... ..... |... +++.+
T Consensus 74 -----------------------------l~~~~~~V~GNhD~~~~----~~~~~---------~~~~-----~~~~l-- 104 (190)
T 1s3l_A 74 -----------------------------LNANIIATYGNNDGERC----KLKEW---------LKDI-----NEENI-- 104 (190)
T ss_dssp -----------------------------CSSEEEEECCTTCCCHH----HHHHH---------HHHH-----CTTCE--
T ss_pred -----------------------------cCCCEEEEeCCCcchHH----HHHHH---------hccc-----Chhhh--
Confidence 24799999999997531 00011 1110 00000
Q ss_pred EEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCc-CC
Q 006878 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPR-FL 246 (627)
Q Consensus 168 ~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~-~~ 246 (627)
...+ ..+. .+.++|+++|++... +.+.+... .+
T Consensus 105 --------------~~~~-----------------~~~~---------~~~~~ill~Hg~~~~------l~~~~~~~~~~ 138 (190)
T 1s3l_A 105 --------------IDDF-----------------ISVE---------IDDLKFFITHGHHQS------VLEMAIKSGLY 138 (190)
T ss_dssp --------------EESE-----------------EEEE---------ETTEEEEEEESCCHH------HHHHHHHHSCC
T ss_pred --------------cccc-----------------eEEe---------eCCcEEEEECCChHH------HHHHHHhcCCC
Confidence 0000 0000 134789999986321 21222223 68
Q ss_pred CEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEE
Q 006878 247 DFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRP 304 (627)
Q Consensus 247 DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~ 304 (627)
|++++||+|.+++. .. .+..+++|||... . . ..+.+|++++++++.+++
T Consensus 139 d~vl~GHtH~~~~~--~~--~~~~~iNpGs~~~--r-~--~~~~~y~il~~~~~~v~~ 187 (190)
T 1s3l_A 139 DVVIYGHTHERVFE--EV--DDVLVINPGECCG--Y-L--TGIPTIGILDTEKKEYRE 187 (190)
T ss_dssp SEEEEECSSCCEEE--EE--TTEEEEECCCSSC--T-T--TSCCEEEEEETTTTEEEE
T ss_pred CEEEECCCCCcceE--EE--CCEEEEECCcccc--c-C--CCCCEEEEEEcCCCcEEE
Confidence 99999999998653 22 2478999999765 2 2 246899999998765443
No 18
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=99.49 E-value=5.9e-13 Score=135.48 Aligned_cols=257 Identities=14% Similarity=0.170 Sum_probs=129.1
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcc
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~ 89 (627)
.+.|||+++||+|++....- .........+.+.+.+.+.+||+||++||++.........-....+.+.++
T Consensus 4 ~~~~~~~~isD~h~~~~~~~--~~~~~~~~~~~l~~~~~~~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~------- 74 (313)
T 1ute_A 4 TPILRFVAVGDWGGVPNAPF--HTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDV------- 74 (313)
T ss_dssp CCCEEEEEECSCCCCSSTTS--SCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTT-------
T ss_pred CCceEEEEEcccCCCCCccc--cCchHHHHHHHHHHHHHhcCCCEEEECCCccCcCCCCCcchHHHHHHHHHH-------
Confidence 46799999999999853210 001112233444455667899999999999765321110000122222221
Q ss_pred ceeeechhhhhcccccCccccCCCCCCC-CCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeEE
Q 006878 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNV-GLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITVY 168 (627)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~vNy~d~n~~~-~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~~ 168 (627)
+.. ... ++|+++|+||||...... ..+......... .+.. ......
T Consensus 75 ---------------~~~-------~~l~~~p~~~v~GNHD~~~~~~--~~~~~~~~~~~~-~~~~------~~y~~~-- 121 (313)
T 1ute_A 75 ---------------FSD-------PSLRNVPWHVLAGNHDHLGNVS--AQIAYSKISKRW-NFPS------PYYRLR-- 121 (313)
T ss_dssp ---------------SCS-------GGGTTCCEEECCCHHHHHSCHH--HHHHGGGTSTTE-ECCS------SSEEEE--
T ss_pred ---------------cCc-------hhhcCCCEEEECCCCccCCCcc--ccccccccCCCc-cCcc------cceEEE--
Confidence 000 013 689999999999754211 111111100000 0000 000000
Q ss_pred EEEEeeCCeeEEEEecCCCC-----------------HHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCC
Q 006878 169 PILIRKGSTAVALYGLGNIR-----------------DERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKT 231 (627)
Q Consensus 169 Pill~kg~~~valyGl~~i~-----------------derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~ 231 (627)
+.+..++..+.+++|.... ...+. ...++|+...... ....++|+++|.+....
T Consensus 122 -~~~~~~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~-----~~q~~wL~~~L~~---~~~~~~iv~~H~p~~~~ 192 (313)
T 1ute_A 122 -FKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALA-----RTQLAWIKKQLAA---AKEDYVLVAGHYPVWSI 192 (313)
T ss_dssp -EECTTSSCEEEEEECCHHHHHCCGGGSTTCSCCSCSCHHHH-----HHHHHHHHHHHHH---CCCSEEEEECSSCSSCC
T ss_pred -EecCCCCceEEEEEEEChHHhCcCccccccccCCccccchH-----HHHHHHHHHHHHh---CCCCeEEEEECCCCccC
Confidence 0001111356666664211 01111 1235666543221 23467999999987653
Q ss_pred CCc---cccccc---cC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCcccccc---------------ccCC-cC
Q 006878 232 NPK---NAINEH---FL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSL---------------IEGE-SK 288 (627)
Q Consensus 232 ~~~---~~i~e~---~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~---------------~egE-~~ 288 (627)
... ..+... ++ ...+|+|++||.|..... . ...+...+.+||.-...- ..++ ..
T Consensus 193 ~~~~~~~~~~~~l~~~l~~~~v~~~l~GH~H~~~~~--~-~~~g~~~i~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (313)
T 1ute_A 193 AEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYL--Q-DENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAENS 269 (313)
T ss_dssp SSSCCCHHHHHHTHHHHHHTTCSEEEECSSSSEEEE--E-CTTCCEEEEECBSSCCCCCCTTGGGSCTTCEEEEECCTTS
T ss_pred CCCCCcHHHHHHHHHHHHHcCCcEEEECChhhhhhc--c-CCCCceEEEECCCcCcCccccccccCCCcccceeccCcCC
Confidence 221 111111 12 246999999999975432 1 122456677777543211 0011 12
Q ss_pred CCeEEEEEEeCCceEEEEEECCCCCcEEEEEEEec
Q 006878 289 PKHVLLLEIKENQYRPTKIPLTSVRPFEYTEIILK 323 (627)
Q Consensus 289 ~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~L~ 323 (627)
..+|.+|+++++.+.++++.+. -+++. ++.|.
T Consensus 270 ~~gy~~l~v~~~~~~~~~~~~~-g~~~~--~~~l~ 301 (313)
T 1ute_A 270 LGGFAYVEITPKEMSVTYIEAS-GKSLF--KTKLP 301 (313)
T ss_dssp CCEEEEEEECSSCEEEEEEETT-SCEEE--EEEEC
T ss_pred CCceEEEEEEcCEEEEEEEcCC-CcEEE--EEEec
Confidence 3699999999988999999985 46544 44444
No 19
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=99.44 E-value=2.2e-12 Score=127.06 Aligned_cols=176 Identities=18% Similarity=0.253 Sum_probs=107.9
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC--hH--HHHHHHHHHHHhhcC
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPS--RS--TLVKAIEILRRHCLN 85 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps--~~--tl~~~~~lLr~l~~g 85 (627)
..||||+++||+|.+ +..|+++++.+.+.++|+|+++||+++....+ .. ....++++|+++
T Consensus 23 ~~mmki~~iSD~H~~------------~~~l~~~l~~~~~~~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~--- 87 (208)
T 1su1_A 23 NAMMKLMFASDIHGS------------LPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEV--- 87 (208)
T ss_dssp --CCEEEEECCCTTB------------HHHHHHHHHHHHHHTCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTT---
T ss_pred cccEEEEEEEcCCCC------------HHHHHHHHHHHHhcCCCEEEECCCccccCcccccccccCHHHHHHHHHhc---
Confidence 346999999999975 35688999998888999999999999864311 00 123456666543
Q ss_pred CCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccce
Q 006878 86 DRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEI 165 (627)
Q Consensus 86 ~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i 165 (627)
+.||++|.||||... ..++.. |...
T Consensus 88 --------------------------------~~~v~~V~GNHD~~~-------~~~~~~------~~~~---------- 112 (208)
T 1su1_A 88 --------------------------------AHKVIAVRGNCDSEV-------DQMLLH------FPIT---------- 112 (208)
T ss_dssp --------------------------------GGGEEECCCTTCCHH-------HHHHSS------SCCC----------
T ss_pred --------------------------------CCceEEEECCCchHH-------HHhhhh------cccc----------
Confidence 369999999999632 011110 1000
Q ss_pred eEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcC
Q 006878 166 TVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (627)
Q Consensus 166 ~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~ 245 (627)
+ . .. ++. -+..+|+++|+..... ..++ . +. .
T Consensus 113 ---~------~--~~-----------------------~~~---------~~g~~i~l~Hg~~~~~---~~l~-~-~~-~ 143 (208)
T 1su1_A 113 ---A------P--WQ-----------------------QVL---------LEKQRLFLTHGHLFGP---ENLP-A-LN-Q 143 (208)
T ss_dssp ---C------S--EE-----------------------EEE---------CSSCEEEEECSSSSBT---TBCC-C-CC-T
T ss_pred ---C------c--eE-----------------------EEE---------ECCcEEEEECCCCCCc---chhh-h-hc-C
Confidence 0 0 00 000 1336899999875431 1121 1 12 3
Q ss_pred CCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCeEEEEEEeCCceEEEEEECCCCCcEEE
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKHVLLLEIKENQYRPTKIPLTSVRPFEY 317 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kgv~lveI~~~~~~~e~IpL~tvRpf~~ 317 (627)
.|++++||+|.+... .. .+..+++|||...-. . ..+.+|++++. + .++.+.+.. .++..
T Consensus 144 ~d~vi~GHtH~~~~~--~~--~~~~~iNpGs~~~pr--~--~~~~sy~il~~--~--~~~~~~~~~-~~~~~ 202 (208)
T 1su1_A 144 NDVLVYGHTHLPVAE--QR--GEIFHFNPGSVSIPK--G--GNPASYGMLDN--D--VLSVIALND-QSIIA 202 (208)
T ss_dssp TCEEECCSSCCCEEE--EE--TTEEEEECCCSSCCC--T--TCCCEEEEEET--T--EEEEEETTT-CCEEE
T ss_pred CCEEEECCcccCccE--Ee--CCEEEEECCCCcCCC--C--CCCCEEEEEEC--C--eEEEEEeCC-CEEEE
Confidence 499999999997652 22 247899999975321 1 23578999984 3 466667753 34443
No 20
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.42 E-value=2.1e-12 Score=132.38 Aligned_cols=208 Identities=17% Similarity=0.180 Sum_probs=113.5
Q ss_pred CCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCC
Q 006878 8 DIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDR 87 (627)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~ 87 (627)
...+++||+++||+|.. +.+|+++++.+...++|.|+++|||++....+. .++++|+++
T Consensus 7 ~~~~~~~i~~iSDiHg~------------~~~l~~vl~~~~~~~~D~ii~~GDlv~~g~~~~----~~~~~l~~~----- 65 (270)
T 3qfm_A 7 HHMDMTKIALLSDIHGN------------TTALEAVLADARQLGVDEYWLLGDILMPGTGRR----RILDLLDQL----- 65 (270)
T ss_dssp ----CEEEEEECCCTTC------------HHHHHHHHHHHHHTTCCEEEECSCCSSSSSCSH----HHHHHHHTS-----
T ss_pred ccccccEEEEEecCCCC------------HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHH----HHHHHHHcc-----
Confidence 45689999999999954 467899999999999999999999998754332 356666542
Q ss_pred ccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCCCccceeE
Q 006878 88 PVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGEITV 167 (627)
Q Consensus 88 p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~~~~~i~~ 167 (627)
-|+++|.||||.... ..+. +. ..|.... ...
T Consensus 66 -------------------------------~~~~~v~GNhD~~~~-------~~~~--~~-~~~~~~~-------~~~- 96 (270)
T 3qfm_A 66 -------------------------------PITARVLGNWEDSLW-------HGVR--KE-LDSTRPS-------QRY- 96 (270)
T ss_dssp -------------------------------CEEEECCCHHHHHHH-------HHHT--TC-SCTTSHH-------HHH-
T ss_pred -------------------------------CCEEEEcCChHHHHH-------Hhhc--cc-cCCCcHH-------HHH-
Confidence 279999999996421 1110 00 0000000 000
Q ss_pred EEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcC--hhhhhhhcCCCceEEEEEccCCCCCCCcccc-c------
Q 006878 168 YPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMR--PEAQEECQVSDWFNILVLHQNRVKTNPKNAI-N------ 238 (627)
Q Consensus 168 ~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~--p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i-~------ 238 (627)
+. ...-|-......+. ++|+. |.... -.-+.++|+++|....... ..++ +
T Consensus 97 ----~~----~~~~~~~~~L~~~~----------~~~L~~LP~~~~--~~~~g~~i~lvHg~p~~~~-~~~~~~~~~~~~ 155 (270)
T 3qfm_A 97 ----LL----RQCQYVLEEISLEE----------IEVLHNQPLQIH--RQFGDLTVGISHHLPDKNW-GRELIHTGKQEE 155 (270)
T ss_dssp ----HH----HHHHHHHTTSCHHH----------HHHHHSCCSEEE--EEETTEEEEEESSBTTBSS-SSTTSTTCCHHH
T ss_pred ----HH----HHHHHHHHHcCHHH----------HHHHHhCCCceE--EEECCcEEEEEECCCCCCC-CceecCCCcHHH
Confidence 00 00000011112222 22221 11100 0014578999997532110 0111 0
Q ss_pred -cccC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccC---CcCCCeEEEEEEeCCc-eEEEEEEC
Q 006878 239 -EHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEG---ESKPKHVLLLEIKENQ-YRPTKIPL 309 (627)
Q Consensus 239 -e~~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~eg---E~~~Kgv~lveI~~~~-~~~e~IpL 309 (627)
..++ ...+|++++||+|.+... .. ..+..+++|||.-.-..... ......|+|+++++++ ++++++.+
T Consensus 156 l~~~~~~~~~d~~i~GHtH~~~~~--~~-~~~~~~iNpGSvg~pr~~~~~~~~~~~asyaild~~~~~~~~v~~~rv 229 (270)
T 3qfm_A 156 FDRLVTHPPCDIAVYGHIHQQLLR--YG-TGGQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRV 229 (270)
T ss_dssp HHHTTTTTTCSEEECCSSCSEEEE--EC-TTSCEEEEECCSSSCCCSSTTGGGCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHhcccCCCEEEECCcCchHhe--ec-cCCEEEEECCCccCCCCCCccccCCCCCEEEEEEecCCCceEEEEEEe
Confidence 1122 346999999999987542 22 23578999999754322110 0125689999999875 56666544
No 21
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=99.39 E-value=1.6e-12 Score=124.14 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=56.2
Q ss_pred eEEEEEccCCCCCC-CccccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCC-CeEEEEE
Q 006878 219 FNILVLHQNRVKTN-PKNAINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKP-KHVLLLE 296 (627)
Q Consensus 219 fnILv~Hq~~~~~~-~~~~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~-Kgv~lve 296 (627)
.+|+++|++..... ....+.+.+....+|++++||+|.+... ... +..+++|||..... + ..+ .++++++
T Consensus 78 ~~i~~~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~~~--~~~--~~~~inpGs~~~~~--~--~~~~~~y~il~ 149 (176)
T 3ck2_A 78 TKIIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAW--LEG--KILFLNPGSISQPR--G--TIRECLYARVE 149 (176)
T ss_dssp EEEEEECSGGGTTTTCSHHHHHHHHHTTCSEEECCSSCCEEEE--EET--TEEEEEECCSSSCC--T--TCCSCCEEEEE
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHhcCCCEEEECCcCCCCcE--EEC--CEEEEECCCCCcCC--C--CCCCCeEEEEE
Confidence 46777777543211 0111111112246899999999997652 222 46889999975322 1 233 7999999
Q ss_pred EeCCceEEEEEECCCCCcE
Q 006878 297 IKENQYRPTKIPLTSVRPF 315 (627)
Q Consensus 297 I~~~~~~~e~IpL~tvRpf 315 (627)
++++.++++.+++. .+++
T Consensus 150 ~~~~~~~v~~~~~~-~~~~ 167 (176)
T 3ck2_A 150 IDDSYFKVDFLTRD-HEVY 167 (176)
T ss_dssp ECSSEEEEEEECTT-SCBC
T ss_pred EcCCEEEEEEEEEC-CEEc
Confidence 99888999999986 3444
No 22
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.36 E-value=2.9e-12 Score=128.20 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHH---Hc--CCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 006878 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAE---QK--EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~---~~--~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
||||+++||+|.. +..|+++++.+. .. ++|+||++|||++... ... .++++|+++.
T Consensus 1 mm~i~~isD~H~~------------~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~-~~~---~~~~~l~~l~--- 61 (252)
T 1nnw_A 1 MVYVAVLANIAGN------------LPALTAALSRIEEMREEGYEIEKYYILGNIVGLFP-YPK---EVIEVIKDLT--- 61 (252)
T ss_dssp -CEEEEEECCTTC------------HHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSS-CHH---HHHHHHHHHH---
T ss_pred CcEEEEEeecCCC------------HHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCC-CHH---HHHHHHHhhH---
Confidence 6999999999954 356778887777 77 8999999999998753 322 3555666541
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
...||++|+||||..
T Consensus 62 ------------------------------~~~~~~~v~GNhD~~ 76 (252)
T 1nnw_A 62 ------------------------------KKENVKIIRGKYDQI 76 (252)
T ss_dssp ------------------------------HHSCEEEECCHHHHH
T ss_pred ------------------------------hhcCeeEEecchHHH
Confidence 125799999999964
No 23
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=99.30 E-value=1.4e-11 Score=128.08 Aligned_cols=203 Identities=15% Similarity=0.063 Sum_probs=111.4
Q ss_pred CCCCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCC
Q 006878 7 EDIANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLND 86 (627)
Q Consensus 7 ~~~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~ 86 (627)
+...+.|||+++||+|..... + .-.++|+||++|||++... ...+..++++|+++
T Consensus 54 p~~~~~mri~~iSD~H~~~~~------------l-------~i~~~D~vi~aGDl~~~g~--~~e~~~~~~~L~~l---- 108 (296)
T 3rl5_A 54 PKPAGHTRFVCISDTRSRTDG------------I-------QMPYGDILLHTGDFTELGL--PSEVKKFNDWLGNL---- 108 (296)
T ss_dssp CCCTTEEEEEEEBCCTTCCTT------------C-------CCCSCSEEEECSCCSSSCC--HHHHHHHHHHHHTS----
T ss_pred CCCCCCeEEEEEeeCCCCcch------------h-------ccCCCCEEEECCcccCCCC--HHHHHHHHHHHHhC----
Confidence 456788999999999987531 1 1147999999999999864 44566677777653
Q ss_pred CccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhh----------------------
Q 006878 87 RPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS---------------------- 144 (627)
Q Consensus 87 ~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~---------------------- 144 (627)
...++|+|+||||...... .++.+.
T Consensus 109 ------------------------------~~~~v~~V~GNHD~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (296)
T 3rl5_A 109 ------------------------------PYEYKIVIAGNHELTFDKE---FMADLVKQDYYRFPSVSKLKPEDFDNVQ 155 (296)
T ss_dssp ------------------------------CCSEEEECCCTTCGGGCHH---HHHHHTTSCGGGSHHHHTCCHHHHTTTG
T ss_pred ------------------------------CCCeEEEEcCCcccccchh---hhhhhhcccccccccccccccchhhhHh
Confidence 1246999999999853211 111110
Q ss_pred --hCCceeeccceeecCCCccceeEEEEEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEE
Q 006878 145 --ACNLVNYFGKMVLGGSGVGEITVYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNIL 222 (627)
Q Consensus 145 --~~glVn~fg~~~l~~~~~~~i~~~Pill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnIL 222 (627)
..|. .|+. -.-+.+ + .+.|||.++..... ...|... ....+..... .......||
T Consensus 156 ~l~~~~-~~L~-------------~~~~~i--~--Gl~i~Gsp~tP~~~-~~~f~~~-~~~~~~~~~~---~ip~~~dIL 212 (296)
T 3rl5_A 156 SLLTNS-IYLQ-------------DSEVTV--K--GFRIYGAPWTPWFN-GWGFNLP-RGQSLLDKWN---LIPEGTDIL 212 (296)
T ss_dssp GGCTTS-EECS-------------SEEEEE--T--TEEEEEECCBCC---CCTTBCC-TTHHHHHHHT---TSCTTCSEE
T ss_pred hhcCCe-EEec-------------CCcEEE--C--CEEEEEecCCCCCC-CcCCCcc-hHHHHHHHHh---hCCCCCeEE
Confidence 0111 1111 111222 2 27889987754211 1112110 0000000000 113557899
Q ss_pred EEccCCCCCCCc----------cccccccC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCccccccccCCcCCCe
Q 006878 223 VLHQNRVKTNPK----------NAINEHFL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVATSLIEGESKPKH 291 (627)
Q Consensus 223 v~Hq~~~~~~~~----------~~i~e~~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~ts~~egE~~~Kg 291 (627)
+.|.+..+.... ..+-+.+. ....+|+++||+|..... ... .+..+++|||.- ... .....
T Consensus 213 vTH~PP~g~~D~~~~~~~~~G~~~L~~~i~~~~~p~l~v~GH~H~~~~~-~~~--g~t~vvNpGs~~-~~~----~~~n~ 284 (296)
T 3rl5_A 213 MTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGGIHEGYGT-MTD--GYTTYINASTCT-VSF----QPTNP 284 (296)
T ss_dssp EESSCBTTSSCEEGGGTEECSBHHHHHHHHHTTCCSEEEECSCGGGCEE-EEC--SSCEEEECBCSC-TTS----CCCSC
T ss_pred EECCCccccccccccccCcCChHHHHHHHHHhcCCCEEEECCccCCCce-EEE--CCEEEEECCcCC-cCc----CCCCC
Confidence 999987664211 01111221 356899999999997532 222 246899999963 222 12234
Q ss_pred EEEEEEe
Q 006878 292 VLLLEIK 298 (627)
Q Consensus 292 v~lveI~ 298 (627)
.+++++.
T Consensus 285 p~v~dl~ 291 (296)
T 3rl5_A 285 PIIFDLP 291 (296)
T ss_dssp CEEEEEE
T ss_pred CEEEEec
Confidence 4666653
No 24
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.26 E-value=7.2e-12 Score=125.91 Aligned_cols=54 Identities=30% Similarity=0.399 Sum_probs=40.9
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
++|||+++||+|.. +.+|+++++.+. ++|.|+++|||++... ... .+++.|+.+
T Consensus 2 ~~mri~~isDiHg~------------~~~l~~~l~~~~--~~d~ii~~GDl~~~g~-~~~---~~~~~l~~~ 55 (246)
T 3rqz_A 2 NAMRILIISDVHAN------------LVALEAVLSDAG--RVDDIWSLGDIVGYGP-RPR---ECVELVRVL 55 (246)
T ss_dssp CCCCEEEECCCTTC------------HHHHHHHHHHHC--SCSEEEECSCCSSSSS-CHH---HHHHHHHHH
T ss_pred CCcEEEEEeecCCC------------HHHHHHHHHhcc--CCCEEEECCCcCCCCC-CHH---HHHHHHHhc
Confidence 67999999999943 356777877765 9999999999998753 322 456666654
No 25
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=99.21 E-value=9.8e-11 Score=124.21 Aligned_cols=262 Identities=12% Similarity=0.071 Sum_probs=131.6
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccc
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQ 90 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~ 90 (627)
..+||++++|||.|+.. .....+.+.+.+.+.++||||++||+|+....+.. -.+..+.+.+.
T Consensus 2 ~~l~f~~igD~g~g~~~--------q~~va~~m~~~~~~~~pd~vl~~GD~~y~G~~~~~-d~~~~~~f~~~-------- 64 (342)
T 3tgh_A 2 CQLRFASLGDWGKDTKG--------QILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLN-DPAWKNLYEDV-------- 64 (342)
T ss_dssp CCEEEEECCSCBSCCHH--------HHHHHHHHHHHHHHTTCCEEEECSCSBTTCCCSTT-CTHHHHHTTTT--------
T ss_pred ceEEEEEEecCCCCCch--------HHHHHHHHHHHHhhcCCCEEEECCCcccCCCCcCc-cHHHHHHHHHH--------
Confidence 35899999999998432 23445677788889999999999999987432211 00122222211
Q ss_pred eeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhh-------------hCCceeeccceee
Q 006878 91 FQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILS-------------ACNLVNYFGKMVL 157 (627)
Q Consensus 91 ~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~-------------~~glVn~fg~~~l 157 (627)
+. .++...++|+|+|.||||...... ..++.-. ....-....++..
T Consensus 65 --------------~~-----~~~~~~~~P~~~vlGNHD~~~~~~--aq~~~~~~~~~~~~~~~~~~~~~~~~~~~rw~~ 123 (342)
T 3tgh_A 65 --------------YS-----EEKGDMYMPFFTVLGTRDWTGNYN--AQLLKGQGIYIEKNGETSIEKDADATNYPKWIM 123 (342)
T ss_dssp --------------SC-----CGGGTTCSEEEECCCHHHHTSCHH--HHHHHHHC---------------CCCSSCEEEC
T ss_pred --------------hh-----hhhhhhCCCEEEeCCCCccCCCch--HhhhhhhcccccccccccccccccccCCCCccC
Confidence 11 111235799999999999864311 1111110 0000000011111
Q ss_pred cCCCcc---ceeE--EEEEEeeC--CeeEEEEecCCCCH-------HHHHhhhcChhHHhhcChhhhhhhcCCCceEEEE
Q 006878 158 GGSGVG---EITV--YPILIRKG--STAVALYGLGNIRD-------ERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILV 223 (627)
Q Consensus 158 ~~~~~~---~i~~--~Pill~kg--~~~valyGl~~i~d-------erl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv 223 (627)
++.... .+.+ .|.....| +..+.++.|....- ..-..... ..++|++.... ...+.|++
T Consensus 124 P~~yY~~~~~f~~~~~~~~~~~g~~~~~v~fi~LDT~~l~~~~~~~~~~~~~~~--~Ql~WLe~~L~-----~~~~~IV~ 196 (342)
T 3tgh_A 124 PNYWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFIDTWVLSSNFPYKKIHEKAWN--DLKSQLSVAKK-----IADFIIVV 196 (342)
T ss_dssp SSSSEEEEEEEEEC---------CEEEEEEEEECCTTTTSTTCSCHHHHHHHHH--HHHHHHHHHHH-----HCSEEEEE
T ss_pred CcceEEEEEEeeccccccccccCCCCceEEEEEEeCcccccCCcccccchHHHH--HHHHHHHHhhc-----cCCcEEEE
Confidence 110000 0000 01111122 23566777654210 00011111 34677765431 23578999
Q ss_pred EccCCCCCCCc---cccccc---cC-CcCCCEEEcCCccccccCCeecCCCCceEecCCCccc-cc--cccC-----CcC
Q 006878 224 LHQNRVKTNPK---NAINEH---FL-PRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSSVA-TS--LIEG-----ESK 288 (627)
Q Consensus 224 ~Hq~~~~~~~~---~~i~e~---~l-p~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~v~-ts--~~eg-----E~~ 288 (627)
.|.+....+.. ..+... ++ ..++|++++||.|..... ... +...+..|+.-. .. .... ...
T Consensus 197 ~HhP~~~~~~~~~~~~l~~~l~~ll~~~~VdlvlsGH~H~~~~~--~~~--g~~~iv~Ga~g~~~~~~~~~~~~s~f~~~ 272 (342)
T 3tgh_A 197 GDQPIYSSGYSRGSSYLAYYLLPLLKDAEVDLYISGHDNNMEVI--EDN--DMAHITCGSGSMSQGKSGMKNSKSLFFSS 272 (342)
T ss_dssp CSSCSSCSSTTCCCHHHHHHTHHHHHHTTCCEEEECSSSSEEEE--EET--TEEEEEECCSSCCCCCCSSCCTTEEEEEC
T ss_pred ECCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCcceeEE--eeC--CcEEEEeCccccccccCCCCCCcceeecC
Confidence 99988653321 111111 22 257999999999987542 112 233333333211 10 0000 024
Q ss_pred CCeEEEEEEeCCceEEEEEECCCCCcEEEEEEE
Q 006878 289 PKHVLLLEIKENQYRPTKIPLTSVRPFEYTEII 321 (627)
Q Consensus 289 ~Kgv~lveI~~~~~~~e~IpL~tvRpf~~~~i~ 321 (627)
+.|+.++++.++.+.++.+....-+.+...++.
T Consensus 273 ~~Gf~~l~v~~~~l~~~~~~~~~G~vld~~~i~ 305 (342)
T 3tgh_A 273 DIGFCVHELSNNGIVTKFVSSKKGEVIYTHKLN 305 (342)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTTEEEEEEEEE
T ss_pred CCcEEEEEEECCEEEEEEEECCCCcEEEEEEEE
Confidence 679999999999999999984445654444443
No 26
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=98.97 E-value=2.5e-08 Score=107.85 Aligned_cols=78 Identities=19% Similarity=-0.000 Sum_probs=51.8
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCC---hHHHHHHHHHHHHhh
Q 006878 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPS---RSTLVKAIEILRRHC 83 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps---~~tl~~~~~lLr~l~ 83 (627)
....+||++++|+|.++. ...+ ++.+.+. ++|+||++||++...... ......+.+.++.+
T Consensus 123 ~~~~~~f~~~gD~~~~~~---------~~~~----l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l- 188 (426)
T 1xzw_A 123 PDVPYVFGLIGDIGQTHD---------SNTT----LTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERS- 188 (426)
T ss_dssp TTCCEEEEEECSCTTBHH---------HHHH----HHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHH-
T ss_pred CCCCeEEEEEEeCCCCCc---------hHHH----HHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHH-
Confidence 457799999999998731 1223 3334444 899999999999764321 22223344444443
Q ss_pred cCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 84 LNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 84 ~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
...+|++++.||||...
T Consensus 189 --------------------------------~~~~P~~~v~GNHD~~~ 205 (426)
T 1xzw_A 189 --------------------------------VAYQPWIWTAGNHEIDY 205 (426)
T ss_dssp --------------------------------HTTSCEECCCCGGGCCC
T ss_pred --------------------------------HhcCCEEEecccccccc
Confidence 24689999999999864
No 27
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=98.92 E-value=2.2e-08 Score=108.21 Aligned_cols=78 Identities=18% Similarity=0.040 Sum_probs=51.6
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc--CCCEEEEcCCCCCCCCCC---hHHHHHHHHHHHHhh
Q 006878 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK--EVDFVLLGGDLFHENKPS---RSTLVKAIEILRRHC 83 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~--~VD~VLlaGDLFd~~~Ps---~~tl~~~~~lLr~l~ 83 (627)
....|||++++|+|+++. .+. +++.+.+. ++|+||++||++...... ......+.++++.+
T Consensus 116 ~~~~~~f~~igD~~~~~~---------~~~----~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~- 181 (424)
T 2qfp_A 116 LDVPYTFGLIGDLGQSFD---------SNT----TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERS- 181 (424)
T ss_dssp TTCCEEEEEECSCTTBHH---------HHH----HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHH-
T ss_pred CCCCeEEEEEEeCCCCCC---------hHH----HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHH-
Confidence 356799999999998741 122 34444444 899999999999865321 12222334444432
Q ss_pred cCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 84 LNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 84 ~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
...+|++++.||||...
T Consensus 182 --------------------------------~~~~P~~~v~GNHD~~~ 198 (424)
T 2qfp_A 182 --------------------------------VAYQPWIWTAGNHEIEF 198 (424)
T ss_dssp --------------------------------HTTSCEEECCCHHHHCC
T ss_pred --------------------------------HhcCCeEeecCCccccc
Confidence 23589999999999753
No 28
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=98.90 E-value=6e-09 Score=117.33 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHc--C--CC-EEEEcCCCCCCCCCChHHH---HHHHHHHHHhhcCCCccceeeechhhhhcccccCccc
Q 006878 38 EAFEEICSIAEQK--E--VD-FVLLGGDLFHENKPSRSTL---VKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVN 109 (627)
Q Consensus 38 ~tFeeil~~A~~~--~--VD-~VLlaGDLFd~~~Ps~~tl---~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vN 109 (627)
..+..+++.++++ + +| ++|.+||+|+... .... ..++++|+.+
T Consensus 105 arla~~v~~~r~~~~~~gpd~Lll~~GD~~~gs~--~~~~~~g~~~~~~ln~l--------------------------- 155 (562)
T 2wdc_A 105 GALTALIRDQKARVEAEGGKALVLDGGDTWTNSG--LSLLTRGEAVVRWQNLV--------------------------- 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCCSSSSH--HHHHHTTHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHhhhhcCCCCEEEEeCCCCCCcch--hhhhhCCHHHHHHHHhh---------------------------
Confidence 3455667777665 4 89 9999999998642 1111 2345555543
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccc-eeecCCCccceeEEE-EEEeeCCeeEEEEecCCC
Q 006878 110 YEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGK-MVLGGSGVGEITVYP-ILIRKGSTAVALYGLGNI 187 (627)
Q Consensus 110 y~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~-~~l~~~~~~~i~~~P-ill~kg~~~valyGl~~i 187 (627)
+.+++ + ||||...+...+ ...+...+. .+++. .... ..+.-.+.| +++..++.+|++.|+-..
T Consensus 156 --------g~d~~-~-GNHEfd~G~~~l--~~~l~~~~~-p~L~aNv~~~--~~~~~~~~py~i~e~~G~kIgiiG~~~~ 220 (562)
T 2wdc_A 156 --------GVDHM-V-SHWEWTLGRERV--EELLGLFRG-EFLSYNIVDD--LFGDPLFPAYRIHRVGPYALAVVGASYP 220 (562)
T ss_dssp --------TCCEE-C-CSGGGGGCHHHH--HHHHHHCCS-EECCSSCEET--TTCCBSSCSEEEEEETTEEEEEEEECCT
T ss_pred --------CCcEE-e-cchhcccCHHHH--HHHHHhCCC-CEEEEEEEec--CCCCcccCCeEEEEECCeEEEEEeeccC
Confidence 45665 6 999975543222 234554442 22221 0000 001101234 345678899999998543
Q ss_pred CHHHHH-------hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcCCCEEEcCCcccccc
Q 006878 188 RDERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRFLDFVVWGHEHECLI 259 (627)
Q Consensus 188 ~derl~-------~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~~DyVa~GH~H~~~i 259 (627)
.-.... -.|.++ ..++...++.. .....+.|++.|.+... ...+... + .++|+|+.||.|....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~~~~d~iIvLsH~g~~~---d~~la~~-~-~giDlIlgGHtH~~~~ 292 (562)
T 2wdc_A 221 YVKVSHPESFTEGLSFALDERRLQEAVDKAR---AEGANAVVLLSHNGMQL---DAALAER-I-RGIDLILSGHTHDLTP 292 (562)
T ss_dssp THHHHSCGGGGTTEECCCCHHHHHHHHHHHH---HTTCSEEEEEECSCHHH---HHHHHTT-S-SSCCEEEECSSCCCCS
T ss_pred cccccccccccCCcEEeCHHHHHHHHHHHHH---HCCCCEEEEEeCCCCcc---hHHHHhc-C-CCCcEEEeCCCCCCCc
Confidence 211000 001110 01111111111 01345889999986321 0011111 2 3699999999999876
Q ss_pred CCeecCCCCceEecCCC
Q 006878 260 DPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 260 ~pq~~~~~~~~i~ypGS 276 (627)
.|..+ + +..++++|+
T Consensus 293 ~~~~~-~-~t~vvqag~ 307 (562)
T 2wdc_A 293 RPWRV-G-KTWIVAGSA 307 (562)
T ss_dssp SCEEE-T-TEEEEECCS
T ss_pred cCEEE-C-CEEEEecCc
Confidence 55444 2 467888886
No 29
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=98.85 E-value=1.1e-08 Score=113.79 Aligned_cols=217 Identities=18% Similarity=0.197 Sum_probs=110.6
Q ss_pred CceEEEEEcCCCCCCCCCch------hchhcHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCChHHHH---HHHHHHH
Q 006878 11 NTVRILVATDCHLGYMEKDE------IRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLV---KAIEILR 80 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~------~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~tl~---~~~~lLr 80 (627)
..++|||++|+|-.....+. ....-.+..+..+++.++++++|.|++ +||+|+.. ....+. ..+++|+
T Consensus 5 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~gG~a~la~~i~~~r~~~~~~llldaGD~~~g~--~~~~~~~g~~~~~~ln 82 (509)
T 3ive_A 5 KDVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGP--YISSLTKGKAIIDIMN 82 (509)
T ss_dssp EEEEEEEECCCTTCCSCBCCTTSGGGTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSS--HHHHTTTTHHHHHHHT
T ss_pred eEEEEEEEccccCCccCcccccccCCCcCcCCHHHHHHHHHHHHhcCCCeEEEECCCCCCCc--hhhhhcCChHHHHHHH
Confidence 46999999999943322210 011113667888888999999998888 99999853 111111 1222222
Q ss_pred HhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeecccee-ecC
Q 006878 81 RHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMV-LGG 159 (627)
Q Consensus 81 ~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~-l~~ 159 (627)
..+.. +++.||||...+...+ .+.+..+++- +++... ...
T Consensus 83 -----------------------------------~lg~D-~~tlGNHEfd~G~~~l--~~~l~~~~~p-~l~aNv~~~~ 123 (509)
T 3ive_A 83 -----------------------------------TMPFD-AVTIGNHEFDHGWDNT--LLQLSQAKFP-IVQGNIFYQN 123 (509)
T ss_dssp -----------------------------------TSCCS-EECCCGGGGTTCHHHH--HHHHTTCSSC-BCCCSEEETT
T ss_pred -----------------------------------hcCCc-EEeecccccccCHHHH--HHHHhhCCCC-EEEEEEEECC
Confidence 22333 5567999976553322 2344444321 111100 000
Q ss_pred CCccceeEEE-EEEeeCCeeEEEEecCCCC-------HHHH-HhhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCC
Q 006878 160 SGVGEITVYP-ILIRKGSTAVALYGLGNIR-------DERL-NRMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRV 229 (627)
Q Consensus 160 ~~~~~i~~~P-ill~kg~~~valyGl~~i~-------derl-~~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~ 229 (627)
.+ ..+-..| .++.+++.+|++.|+-... .... .-.|.++ ..++...++. .....+-|++.|....
T Consensus 124 ~~-~p~~~~py~i~e~~G~kIgiiG~t~~~~~~~~~~~~~~~g~~~~d~~~~~~~~v~~L----k~~~D~iIvl~H~G~~ 198 (509)
T 3ive_A 124 SS-KSFWDKPYTIIEKDGVKIGVIGLHGVFAFNDTVSAATRVGIEARDEIKWLQRYIDEL----KGKVDLTVALIHEGVP 198 (509)
T ss_dssp SC-CBSSSCSEEEEEETTEEEEEEEEECHHHHHHHSCGGGCTTEEECCHHHHHHHHHHHH----TTTCSEEEEEEECSSC
T ss_pred CC-CccCcCCeEEEEECCEEEEEEecccCcccccccccccCCCCEEcCHHHHHHHHHHHH----HhcCCEEEEEeccCcC
Confidence 00 0110123 3457788999999983210 0000 0011111 0011111111 1124578999999864
Q ss_pred CCCCc----cc---c--c---cccCCcCCCEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 230 KTNPK----NA---I--N---EHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 230 ~~~~~----~~---i--~---e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
..... +. . . ...++ ++|+|+.||.|.....|..+. +..++|+|+
T Consensus 199 ~~~~~~~~~~~~~~~~~d~~la~~~~-giDlIlgGHtH~~~~~~~~~~--~~~ivqag~ 254 (509)
T 3ive_A 199 ARQSSMGGTDVRRALDKDIQTASQVK-GLDILITGHAHVGTPEPIKVG--NTLILSTDS 254 (509)
T ss_dssp CCCCCC---CCCCCCHHHHHHHHHCS-SCCEEEEESSCCCCSSCEEET--TEEEECCCS
T ss_pred CccccccccccccccchHHHHHhcCC-CCcEEEeCCcCccCCCCeeeC--CEEEEecCh
Confidence 32110 00 0 0 11223 599999999998766555543 467888876
No 30
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=98.83 E-value=9.5e-09 Score=114.23 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=98.7
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHH----cCC-CEEEEcCCCCCCCCCChHHH---HHHHHHHH
Q 006878 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ----KEV-DFVLLGGDLFHENKPSRSTL---VKAIEILR 80 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~----~~V-D~VLlaGDLFd~~~Ps~~tl---~~~~~lLr 80 (627)
....|+|||++|+|..+...+. ..-.+..+..+++.+++ .++ |+||.+||+|+.. | ...+ ...+++|+
T Consensus 5 ~~~~l~Il~~~D~H~~~~~~~~--~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~-~-~~~~~~~~~~~~~ln 80 (516)
T 1hp1_A 5 KTYKITVLHTNDHHGHFWRNEY--GEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGV-P-ESDLQDAEPDFRGMN 80 (516)
T ss_dssp CCEEEEEEEECCCTTCCSCCTT--SCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSC-H-HHHTTTTHHHHHHHH
T ss_pred CceEEEEEEecccccCccCCCC--CCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCc-c-hhhhcCCcHHHHHHh
Confidence 3456999999999976533210 11123344455554443 356 7999999999753 2 1111 23445555
Q ss_pred HhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceeecCC
Q 006878 81 RHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGS 160 (627)
Q Consensus 81 ~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l~~~ 160 (627)
.+ + +.+++.||||...+...+ ...+..+++ .+++......
T Consensus 81 ~l-----------------------------------g-~d~~~~GNHEfd~g~~~l--~~~~~~~~~-~~l~aNv~~~- 120 (516)
T 1hp1_A 81 LV-----------------------------------G-YDAMAIGNHEFDNPLTVL--RQQEKWAKF-PLLSANIYQK- 120 (516)
T ss_dssp HH-----------------------------------T-CCEEECCGGGGSSCHHHH--HHHHHHCSS-CEECSSEEET-
T ss_pred cc-----------------------------------C-CCEEeeccccccCCHHHH--HHHHhhCCC-CEEEeEEEEC-
Confidence 43 2 236889999986553221 233444432 1111100000
Q ss_pred CccceeEEE-EEEeeCCeeEEEEecCCCCHHHHH-------hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCCCC
Q 006878 161 GVGEITVYP-ILIRKGSTAVALYGLGNIRDERLN-------RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVKT 231 (627)
Q Consensus 161 ~~~~i~~~P-ill~kg~~~valyGl~~i~derl~-------~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~ 231 (627)
..+.-.+.| ..+..++.+|++.|+....-.... -.|.++ ..++...++... .....+.|++.|.+....
T Consensus 121 ~~g~~~~~~~~i~~~~G~kIgiiG~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~v~~l~~--~~~~d~iI~l~H~g~~~~ 198 (516)
T 1hp1_A 121 STGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQ--TEKPDIIIAATHMGHYDN 198 (516)
T ss_dssp TTTEESSBSEEEEEETTEEEEEEEEECTTTTTSSSCCSCTTEEECCHHHHHHHHHHHHHH--HTCCSEEEEEEESCCCGG
T ss_pred CCCCcccCCeEEEEECCEEEEEEEecccCcccccCcCccCCcEEeCHHHHHHHHHHHHHh--cCCCCEEEEEecCCccCC
Confidence 000001123 345678899999998432100000 001110 001101011100 013468999999986421
Q ss_pred CC------c-cccccccCCcCCCEEEcCCcccccc
Q 006878 232 NP------K-NAINEHFLPRFLDFVVWGHEHECLI 259 (627)
Q Consensus 232 ~~------~-~~i~e~~lp~~~DyVa~GH~H~~~i 259 (627)
.. . ..+...+-...+|+|+.||.|....
T Consensus 199 ~~~~~~~~~~~~la~~~~~~~iDlilgGHtH~~~~ 233 (516)
T 1hp1_A 199 GEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVC 233 (516)
T ss_dssp GCCTTSCCCHHHHHHHSCTTSSSEEECCSSCCBCC
T ss_pred CcccccCchHHHHHHhCCCCceeEEECCCCCcccc
Confidence 10 0 0111112223599999999998654
No 31
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=98.82 E-value=1.3e-08 Score=114.10 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=103.7
Q ss_pred CCCceEEEEEcCCCCCCCCCch---hch--hcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCChHHH---HHHHHHH
Q 006878 9 IANTVRILVATDCHLGYMEKDE---IRR--HDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRSTL---VKAIEIL 79 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~---~r~--~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~~Ps~~tl---~~~~~lL 79 (627)
....++|||++|+|........ ... .-.+..+..+++.++++.+| ++|.+||+|+.... ..+ ...+++|
T Consensus 26 ~~~~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~--~~~~~~~~~~~~l 103 (552)
T 2z1a_A 26 GGFTLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLY--FNQYRGLADRYFM 103 (552)
T ss_dssp --CEEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHH--HHHHTTHHHHHHH
T ss_pred CCeeEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHH--HHHhCCcHHHHHH
Confidence 3457999999999965432200 000 11356678888888888898 88999999986421 111 1233444
Q ss_pred HHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccc-eeec
Q 006878 80 RRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGK-MVLG 158 (627)
Q Consensus 80 r~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~-~~l~ 158 (627)
+.+ +. .+++.||||...+...+ ...+...+. .+++. ....
T Consensus 104 n~l-----------------------------------g~-d~~~lGNHEfd~g~~~l--~~~l~~~~~-~~L~aNv~~~ 144 (552)
T 2z1a_A 104 HRL-----------------------------------RY-RAMALGNHEFDLGPGPL--ADFLKGARF-KVVSANVDAS 144 (552)
T ss_dssp HHT-----------------------------------TC-CEEECCGGGGTTCHHHH--HHHHTTCCS-EEECTTEECT
T ss_pred Hhc-----------------------------------CC-CccccccccccCCHHHH--HHHHhhCCC-CEEEEEEecC
Confidence 332 22 36788999986543222 234555543 22221 1100
Q ss_pred CC-CccceeEEE-EEEeeCCeeEEEEecCCCCHHHHHh-----hhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCCCC
Q 006878 159 GS-GVGEITVYP-ILIRKGSTAVALYGLGNIRDERLNR-----MFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNRVK 230 (627)
Q Consensus 159 ~~-~~~~i~~~P-ill~kg~~~valyGl~~i~derl~~-----~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~ 230 (627)
.. .... .+.| +.+..++.+|+|.|+-...-..... .|.++ ..++...++.. .....+.|++.|.+...
T Consensus 145 ~~~~~~~-~~~~~~i~~~~G~kIgiiG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~l~---~~~~d~iIvL~H~g~~~ 220 (552)
T 2z1a_A 145 REPRLKG-LFAPYAVVVVGGERVGIIGLTTPDTREISNPGPTVAFLDPYESAQKAVYELL---AKGVNKIVVLSHLGYGE 220 (552)
T ss_dssp TCGGGTT-SCBSEEEEEETTEEEEEEEEECTTHHHHSCCCTTCEECCHHHHHHHHHHHHH---HTTCCCEEEEEESCHHH
T ss_pred CCccccc-ccCCeEEEEECCEEEEEEEecccchhhccCCCCCcEECCHHHHHHHHHHHHH---hcCCCEEEEEeCCCcch
Confidence 00 0000 0233 3456788999999985432111100 01110 01111111111 01346889999986421
Q ss_pred CCCccccccccCCcCCCEEEcCCcccccc
Q 006878 231 TNPKNAINEHFLPRFLDFVVWGHEHECLI 259 (627)
Q Consensus 231 ~~~~~~i~e~~lp~~~DyVa~GH~H~~~i 259 (627)
...+... + .++|+|+.||.|..+.
T Consensus 221 ---d~~la~~-~-~gvDlIlgGHtH~~~~ 244 (552)
T 2z1a_A 221 ---DLKLARR-L-VGVQVIVGGHSHTLLG 244 (552)
T ss_dssp ---HHHHHTT-C-SSCCEEEECSSCCCBS
T ss_pred ---HHHHHHh-C-CCccEEEeCCcCcccc
Confidence 0011111 2 4699999999999764
No 32
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=98.73 E-value=9.1e-09 Score=99.48 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCCCCCCCchhch-hcHHHHHHHHHHHHHH--cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCc
Q 006878 12 TVRILVATDCHLGYMEKDEIRR-HDSFEAFEEICSIAEQ--KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRP 88 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~-~Ds~~tFeeil~~A~~--~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p 88 (627)
.|||+++||+|+|.......+. .+....++.+++.+.+ .++|+|+++|||++.. +... .++++|+++
T Consensus 1 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~-~~~~---~~~~~l~~l------ 70 (195)
T 1xm7_A 1 NAMMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHF-NDKN---EYLRIWKAL------ 70 (195)
T ss_dssp CCCEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCS-CCTT---SHHHHHHHS------
T ss_pred CcEEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCc-hhHH---HHHHHHHHC------
Confidence 3899999999999753211110 1111234566677766 4899999999999875 3322 355666653
Q ss_pred cceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 89 VQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 89 ~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
..|+++|+||||..
T Consensus 71 -----------------------------~~~~~~v~GNhD~~ 84 (195)
T 1xm7_A 71 -----------------------------PGRKILVMGNHDKD 84 (195)
T ss_dssp -----------------------------SSEEEEECCTTCCC
T ss_pred -----------------------------CCCEEEEeCCCCCc
Confidence 24899999999974
No 33
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=98.65 E-value=1.3e-07 Score=105.58 Aligned_cols=216 Identities=19% Similarity=0.271 Sum_probs=110.8
Q ss_pred CCceEEEEEcCCCCCCCCCchh----chhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCChHHH-------HHHHH
Q 006878 10 ANTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRSTL-------VKAIE 77 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~----r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~~Ps~~tl-------~~~~~ 77 (627)
...++|||++|+|-.+...+.. ...-.+..+..+++.++++.++ ++|.+||+|+.. |-...+ ...++
T Consensus 17 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs-~~~~~~~~~~~~~~~~~~ 95 (527)
T 3qfk_A 17 GSNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGS-PFCNYLIAHSGSSQPLVD 95 (527)
T ss_dssp -CEEEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSS-HHHHHHHHTTCSSHHHHH
T ss_pred CCcEEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCc-HHHHHHhhcccCcchHHH
Confidence 4679999999999554322210 1112356778888888888887 667799999854 221111 23444
Q ss_pred HHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccceee
Q 006878 78 ILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVL 157 (627)
Q Consensus 78 lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~~~l 157 (627)
+|+. .+.. +++.||||...+...+ .+++..++.- +++....
T Consensus 96 ~ln~-----------------------------------lg~D-~~t~GNHefd~G~~~l--~~~~~~~~~p-~l~aNv~ 136 (527)
T 3qfk_A 96 FYNR-----------------------------------MAFD-FGTLGNHEFNYGLPYL--KDTLRRLNYP-VLCANIY 136 (527)
T ss_dssp HHHH-----------------------------------TCCC-EECCCGGGGTTCHHHH--HHHHHHCSSC-BCCSSEE
T ss_pred HHHh-----------------------------------cCCc-EEeccccccccCHHHH--HHHHHhCCCC-EEEeEee
Confidence 5443 2344 4568999976553322 2344444321 1111000
Q ss_pred cCCCccceeEEE-EEEeeCCeeEEEEecCCCC------HHHHH-hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccCC
Q 006878 158 GGSGVGEITVYP-ILIRKGSTAVALYGLGNIR------DERLN-RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQNR 228 (627)
Q Consensus 158 ~~~~~~~i~~~P-ill~kg~~~valyGl~~i~------derl~-~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~~ 228 (627)
.. + ..+...| ..+..++.+|++.|+-... ..... -.|.++ ..++...++... ...+-|++.|...
T Consensus 137 ~~-g-~p~~~~py~i~e~~G~kIgviG~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~v~~l~~----~~D~iIvl~H~G~ 210 (527)
T 3qfk_A 137 EN-D-STLTDNGVKYFQVGDQTVGVIGLTTQFIPHWEQPEHIQSLTFHSAFEILQQYLPEMKR----HADIIVVCYHGGF 210 (527)
T ss_dssp ET-T-EESSSCSEEEEEETTEEEEEEEEECTTGGGTSCHHHHTTEEECCHHHHHHHHHHHHHH----HCSEEEEEEECCC
T ss_pred eC-C-CCccCCCEEEEEECCEEEEEEEeccCCcccccCccccCCcEEcCHHHHHHHHHHHHHh----CCCEEEEEeCcCc
Confidence 00 0 0000122 3456788999999984321 11000 011111 001111111111 2357899999875
Q ss_pred CCCC----Ccc---------ccccccCCcCCCEEEcCCccccccCCeecCCCCceEecCCC
Q 006878 229 VKTN----PKN---------AINEHFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGS 276 (627)
Q Consensus 229 ~~~~----~~~---------~i~e~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS 276 (627)
.... +.. .+... +..++|+|+.||.|..+. ..+. +..|++||+
T Consensus 211 ~~d~~~~~~~~~~~~e~~~~~la~~-~~~giDlIlgGHtH~~~~--~~v~--~~~ivqag~ 266 (527)
T 3qfk_A 211 EKDLESGTPTEVLTGENEGYAMLEA-FSKDIDIFITGHQHRQIA--ERFK--QTAVIQPGT 266 (527)
T ss_dssp SBCTTTCCBSSCCSSSCCHHHHHHH-HGGGCSEEECCSSCCEEE--EEET--TEEEEEECS
T ss_pred ccccccCccccccccchHHHHHHHh-cCCCCcEEEECCCCcccc--eEEC--CEEEeccCh
Confidence 4321 000 11111 225799999999999764 3343 468888887
No 34
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=98.57 E-value=1.3e-07 Score=106.09 Aligned_cols=203 Identities=18% Similarity=0.164 Sum_probs=101.4
Q ss_pred CCCceEEEEEcCCCCCCCCCchhc--------hhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCChH-HHHHHHHH
Q 006878 9 IANTVRILVATDCHLGYMEKDEIR--------RHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRS-TLVKAIEI 78 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r--------~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~-tl~~~~~l 78 (627)
+.-.++|||++|+|-.+...+... ..-.+..+..+++.++++.+ +++|.+||+|+....+.. .-...+++
T Consensus 22 ~~~~l~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ 101 (546)
T 4h2g_A 22 DPWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHF 101 (546)
T ss_dssp -CEEEEEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHH
T ss_pred CceEEEEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHH
Confidence 345699999999996544322110 11135677888888888877 599999999986532110 01234445
Q ss_pred HHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHH-HHhhhCCceeeccc-ee
Q 006878 79 LRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAV-DILSACNLVNYFGK-MV 156 (627)
Q Consensus 79 Lr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~l-diL~~~glVn~fg~-~~ 156 (627)
|+.+ ++. +++.||||...+...+ . .++..++.- +++. ..
T Consensus 102 ln~l-----------------------------------g~d-~~~~GNHEfd~g~~~l--~~~~~~~~~~~-~l~aNv~ 142 (546)
T 4h2g_A 102 MNAL-----------------------------------RYD-AMALGNHEFDNGVEGL--IEPLLKEAKFP-ILSANIK 142 (546)
T ss_dssp HHHH-----------------------------------TCS-EEECCGGGGTTHHHHH--HTTTTTTCSSC-EECSSEE
T ss_pred HHhc-----------------------------------CCc-EEeccCcccccCHHHH--HHHHHhhcCCC-EEEEEee
Confidence 5443 333 5778999975432211 1 233333321 1111 00
Q ss_pred ecCCCccce--eEEE-EEEeeCCeeEEEEecCCCCHHHHH-----hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEccC
Q 006878 157 LGGSGVGEI--TVYP-ILIRKGSTAVALYGLGNIRDERLN-----RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQN 227 (627)
Q Consensus 157 l~~~~~~~i--~~~P-ill~kg~~~valyGl~~i~derl~-----~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq~ 227 (627)
....+...+ .+.| +++.+++.+|++.|+-...-.... -.|.++ ..++...++.. .....+-|++.|..
T Consensus 143 ~~~~~~p~~~~~~~~~~i~~~~G~kIgiiG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~l~---~~g~D~iI~l~H~g 219 (546)
T 4h2g_A 143 AKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLK---TLNVNKIIALGHSG 219 (546)
T ss_dssp ECHHHHHHHBTTBBSEEEEEETTEEEEEEEEECTTHHHHSCCCSSEEECCHHHHHHHHHHHHH---HTTCCCEEEEEESC
T ss_pred cCCCCCccccccCCCeEEEEECCEEEEEEEecccccccccCCCCCcEEccHHHHHHHHHHHHH---hcCCCEEEEEeccC
Confidence 000000000 0122 346778899999998543211110 011111 00111111110 01245899999986
Q ss_pred CCCCCCccccccccCCcCCCEEEcCCccccc
Q 006878 228 RVKTNPKNAINEHFLPRFLDFVVWGHEHECL 258 (627)
Q Consensus 228 ~~~~~~~~~i~e~~lp~~~DyVa~GH~H~~~ 258 (627)
... ...+.. .+ .++|+|+.||.|...
T Consensus 220 ~~~---d~~la~-~~-~giDlIlgGHtH~~~ 245 (546)
T 4h2g_A 220 FEM---DKLIAQ-KV-RGVDVVVGGHSNTFL 245 (546)
T ss_dssp HHH---HHHHHH-HS-TTCCEEECCSSCCCC
T ss_pred ccc---hHHHHH-hC-CCCcEEEeCCcCccc
Confidence 421 011211 22 469999999999864
No 35
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=4e-06 Score=88.70 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCCCCCCchh----chhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCC
Q 006878 11 NTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHE 64 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~----r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~ 64 (627)
-.++|||++|+|-.....+.. ...-.+..+..+++.++++.++ ++|.+||+|+.
T Consensus 7 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qG 65 (339)
T 3jyf_A 7 VDLRIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQG 65 (339)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSS
T ss_pred eeEEEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCC
Confidence 458999999999654432211 1112356677788888888876 66889999964
No 36
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=98.43 E-value=2.1e-07 Score=105.08 Aligned_cols=199 Identities=20% Similarity=0.209 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCCCCCCch---hc------hhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCChHHH---HHHH
Q 006878 10 ANTVRILVATDCHLGYMEKDE---IR------RHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHENKPSRSTL---VKAI 76 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~---~r------~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~~Ps~~tl---~~~~ 76 (627)
.-.++|||++|+|-.+...+. .. ..-.+..+..+++.++++.++ ++|.+||+|+.... ..+ ...+
T Consensus 10 ~~~l~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~--~~~~~g~~~~ 87 (579)
T 3ztv_A 10 AVELSILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLY--FTLFGGSADA 87 (579)
T ss_dssp CEEEEEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHH--HHTTTTHHHH
T ss_pred ceEEEEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcee--eeecCCHHHH
Confidence 345999999999944332210 00 001266778888888888887 88999999986411 111 1234
Q ss_pred HHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCceeeccc-e
Q 006878 77 EILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGK-M 155 (627)
Q Consensus 77 ~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glVn~fg~-~ 155 (627)
++|+.+ ++. ++..||||...+...+ ..++...++- +++. .
T Consensus 88 ~~ln~l-----------------------------------g~D-~~tlGNHEfd~G~~~l--~~~~~~~~fp-~l~aNv 128 (579)
T 3ztv_A 88 AVMNAG-----------------------------------NFH-YFTLGNHEFDAGNEGL--LKLLEPLKIP-VLSANV 128 (579)
T ss_dssp HHHHHH-----------------------------------TCS-EEECCSGGGTTHHHHH--HHHHTTCCSC-EECSSE
T ss_pred HHHHhc-----------------------------------CcC-eeeccccccccCHHHH--HHHHHhcCCC-eeeeeE
Confidence 444432 333 4678999965443222 2344444321 1111 1
Q ss_pred eec-CCCccceeEEE-EEEeeCCeeEEEEecCCCCHHH-HH-----hhhcCh-hHHhhcChhhhhhhcCCCceEEEEEcc
Q 006878 156 VLG-GSGVGEITVYP-ILIRKGSTAVALYGLGNIRDER-LN-----RMFQTP-HAVQWMRPEAQEECQVSDWFNILVLHQ 226 (627)
Q Consensus 156 ~l~-~~~~~~i~~~P-ill~kg~~~valyGl~~i~der-l~-----~~f~~~-~~v~~l~p~~~~~~~~~~~fnILv~Hq 226 (627)
... +..... .+.| +++..++.+|+|.|+-....-. .. -.|.++ ..++...++.. ...-.+-|++.|.
T Consensus 129 ~~~~~~~~~~-~~~py~i~~~~G~kIgviG~t~~~~~~~~~~p~~~~~f~d~~~~~~~~v~~lk---~~g~d~iI~l~H~ 204 (579)
T 3ztv_A 129 IPDKSSILYN-KWKPYDIFTVDGEKIAIIGLDTVNKTVNSSSPGKDVKFYDEIATAQIMANALK---QQGINKIILLSHA 204 (579)
T ss_dssp EECTTSTTTT-SCBSEEEEEETTEEEEEEEEECSHHHHHHSCCCTTEEECCHHHHHHHHHHHHH---TTTCCCEEEEEET
T ss_pred eccCCccccc-ccCCeEEEEECCEEEEEEEEEcCCccccccCCCCCceEcCHHHHHHHHHHHHH---hCCCCEEEEEecc
Confidence 000 000000 1123 3457788999999983211000 00 011111 00111111110 0113477999998
Q ss_pred CCCCCCCccccccccCCcCCCEEEcCCccccc
Q 006878 227 NRVKTNPKNAINEHFLPRFLDFVVWGHEHECL 258 (627)
Q Consensus 227 ~~~~~~~~~~i~e~~lp~~~DyVa~GH~H~~~ 258 (627)
.... ...+. ..+ .++|+|+.||.|..+
T Consensus 205 G~~~---d~~la-~~~-~giDlIlgGHtH~~~ 231 (579)
T 3ztv_A 205 GSEK---NIEIA-QKV-NDIDVIVTGDSHYLY 231 (579)
T ss_dssp CHHH---HHHHH-HHC-SSCCEEEECSSCCEE
T ss_pred Cchh---hHHHH-HhC-CCCCEEEeCCCCccc
Confidence 6421 00111 122 369999999999976
No 37
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=98.41 E-value=3.9e-06 Score=88.76 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCCCCCCchh----chhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 006878 11 NTVRILVATDCHLGYMEKDEI----RRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~----r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~ 65 (627)
-.++|||++|+|-.....+.. ...-.+..+..+++.++++.++ ++|.+||+|...
T Consensus 10 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs 69 (341)
T 3gve_A 10 VHLSILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGN 69 (341)
T ss_dssp EEEEEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSS
T ss_pred eEEEEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCc
Confidence 459999999999654432210 0111356677778888887776 556799999754
No 38
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=98.01 E-value=1.3e-06 Score=85.82 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=36.6
Q ss_pred CCCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCC
Q 006878 9 IANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENK 66 (627)
Q Consensus 9 ~~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~~ 66 (627)
...+|||+++||+|-. +..|+++++.+... ++|.|+++||+++...
T Consensus 9 ~~~~~~i~visDiHg~------------~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~ 55 (221)
T 1g5b_A 9 GSKYRNIWVVGDLHGC------------YTNLMNKLDTIGFDNKKDLLISVGDLVDRGA 55 (221)
T ss_dssp GGGCSCEEEECCCTTC------------HHHHHHHHHHHTCCTTTCEEEECSCCSSSSS
T ss_pred CCCCceEEEEEcCCCC------------HHHHHHHHHHccCCCCCCEEEEeCCccCCCC
Confidence 3457999999999932 45688888877653 7999999999998763
No 39
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=97.93 E-value=5.3e-06 Score=84.34 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCC
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKP 67 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~P 67 (627)
+||+++||+| |. +..|+++++.+....+ |.||++||++|....
T Consensus 19 ~~i~visDiH-g~-----------~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~ 62 (262)
T 2qjc_A 19 GRVIIVGDIH-GC-----------RAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPD 62 (262)
T ss_dssp SCEEEECCCT-TC-----------HHHHHHHHHHHTCCTTTSEEEECSCCSSSSSC
T ss_pred CeEEEEeCCC-CC-----------HHHHHHHHHHHhccCCCCEEEEecCCCCCCCC
Confidence 4999999999 42 4568888888876665 999999999997643
No 40
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=97.87 E-value=1.4e-05 Score=89.82 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=35.7
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCch--h-ch-hcHHHHHHHHHHH-HHHcCCC-EEEEcCCCCCC
Q 006878 6 REDIANTVRILVATDCHLGYMEKDE--I-RR-HDSFEAFEEICSI-AEQKEVD-FVLLGGDLFHE 64 (627)
Q Consensus 6 ~~~~~~~mKILh~SD~HLG~~~~d~--~-r~-~Ds~~tFeeil~~-A~~~~VD-~VLlaGDLFd~ 64 (627)
++.....++|||++|+|-....... . .. --.+..+-..++. +.++++| ++|.+||+|+.
T Consensus 9 ~~~~~~~l~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~~~LlldaGD~~~G 73 (557)
T 3c9f_A 9 RNLTWNDINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDG 73 (557)
T ss_dssp CCCCCCSEEEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSS
T ss_pred CCCCceEEEEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 3445678999999999976533210 0 00 0013444444443 3357888 47999999975
No 41
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=97.76 E-value=1.4e-05 Score=82.17 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=50.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHH-cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ-KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~-~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
|||++++|+|-. +..|+++++.+.. .++|.++++||++|....+. .++++|..+
T Consensus 1 M~i~vigDiHG~------------~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~----~~l~~l~~l--------- 55 (280)
T 2dfj_A 1 MATYLIGDVHGC------------YDELIALLHKVEFTPGKDTLWLTGDLVARGPGSL----DVLRYVKSL--------- 55 (280)
T ss_dssp -CEEEECCCCSC------------HHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHH----HHHHHHHHT---------
T ss_pred CeEEEEecCCCC------------HHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccH----HHHHHHHhC---------
Confidence 799999999954 4567788877665 47899999999999764443 355566543
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
..+|++|.||||..
T Consensus 56 --------------------------~~~~~~v~GNHe~~ 69 (280)
T 2dfj_A 56 --------------------------GDSVRLVLGNHDLH 69 (280)
T ss_dssp --------------------------GGGEEECCCHHHHH
T ss_pred --------------------------CCceEEEECCCcHH
Confidence 13799999999964
No 42
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=97.75 E-value=9.2e-05 Score=76.33 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcc
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~ 89 (627)
..||||+++|+| |+. -...+...+...+++ ++|++++.||-+-...+-.. ...+.|..+
T Consensus 3 ~~m~ilf~GDv~-G~~---------G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~---~~~~~ln~~------- 62 (281)
T 1t71_A 3 NSIKFIFLGDVY-GKA---------GRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSL---KHYEFLKEA------- 62 (281)
T ss_dssp CCCEEEEECEEB-HHH---------HHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCH---HHHHHHHHH-------
T ss_pred ceEEEEEECCcC-ChH---------HHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCH---HHHHHHHhc-------
Confidence 359999999999 542 234455566666554 78999998887765544332 344445442
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCce---eeccceeecCCCcccee
Q 006878 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLV---NYFGKMVLGGSGVGEIT 166 (627)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glV---n~fg~~~l~~~~~~~i~ 166 (627)
++-+.++ |||+.-.+.+ .++.|.....+ ||- . ...... .
T Consensus 63 ----------------------------G~Da~Tl-GNHefD~g~~---~~~~l~~~~~v~~aN~p-~---~~~~~~--~ 104 (281)
T 1t71_A 63 ----------------------------GVNYITM-GNHTWFQKLD---LAVVINKKDLVRPLNLD-T---SFAFHN--L 104 (281)
T ss_dssp ----------------------------TCCEEEC-CTTTTCCGGG---HHHHTTCTTEECBSCBC-T---TSTTTT--S
T ss_pred ----------------------------CCCEEEE-ccCcccCCcc---HHHHhhhcCEEeeccCC-c---cccccc--C
Confidence 4555555 9999876622 22333322111 110 0 000000 0
Q ss_pred EEE-EEEeeCCeeEEEEecC----CCCHHHHHhhhcChh-HHh-hcChhhhhhhcCCCceEEEEEccCCCCCCCcccccc
Q 006878 167 VYP-ILIRKGSTAVALYGLG----NIRDERLNRMFQTPH-AVQ-WMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINE 239 (627)
Q Consensus 167 ~~P-ill~kg~~~valyGl~----~i~derl~~~f~~~~-~v~-~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e 239 (627)
..| ..++.++.+|++.|+- ++. -.+.++- .++ ++. . ..-.+-|++.|.... .....-.
T Consensus 105 g~g~~I~e~~G~kIgVIgl~g~~~f~~-----~~~~~pf~~a~~~v~-~------~~~diIIv~~H~g~t---~Ek~~la 169 (281)
T 1t71_A 105 GQGSLVFEFNKAKIRITNLLGTSVPLP-----FKTTNPFKVLKELIL-K------RDCDLHIVDFHAETT---SEKNAFC 169 (281)
T ss_dssp SBSEEEEECSSCEEEEEEEECTTSCCS-----SCBCCHHHHHHHHHT-T------CCCSEEEEEEECSCH---HHHHHHH
T ss_pred CCCeEEEEECCEEEEEEEeeccccccC-----ccccCHHHHHHHHHh-h------cCCCEEEEEeCCCch---HHHHHHH
Confidence 012 3466788999998863 221 0122210 111 111 1 123578999996421 1111111
Q ss_pred ccCCcCCCEEEcCCccccccCCeecCCCCceEec
Q 006878 240 HFLPRFLDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (627)
Q Consensus 240 ~~lp~~~DyVa~GH~H~~~i~pq~~~~~~~~i~y 273 (627)
..++..+|+|+-||.|....+|+.+++...++.+
T Consensus 170 ~~~dg~VD~VvGgHTHv~t~d~~il~~gt~~i~d 203 (281)
T 1t71_A 170 MAFDGYVTTIFGTHTHVPSADLRITPKGSAYITD 203 (281)
T ss_dssp HHHTTTSSEEEEESSSSCCTTCEECTTSCEEESC
T ss_pred HhCCCCeEEEEeCCCCcCCCceEEecCCcEEEec
Confidence 2355679999999999988776665443333443
No 43
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=97.69 E-value=0.00015 Score=80.65 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCCCCCch--------hchhcHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCC
Q 006878 13 VRILVATDCHLGYMEKDE--------IRRHDSFEAFEEICSIAEQKEVD-FVLLGGDLFHEN 65 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~--------~r~~Ds~~tFeeil~~A~~~~VD-~VLlaGDLFd~~ 65 (627)
++|||++|+|--....+. ....-.+..+..+++.+++++++ ++|.+||+|..+
T Consensus 4 LtILhtnD~Hg~l~~~~~~~~~~~~~~~~~GG~arlat~i~~~r~~~~n~llldaGD~~qGs 65 (530)
T 4h1s_A 4 LTILHTNDVHSRLEQTSEDSSKCVNASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGT 65 (530)
T ss_dssp EEEEEECCCTTCCSCBCTTSSBCCSTTSCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSS
T ss_pred EEEEEEcccccCCcccCcccccccccccccCcHHHHHHHHHHHHhhCcCeEEEEeCCcccch
Confidence 789999999944322211 01111356677778888888887 455699999864
No 44
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=97.40 E-value=0.0015 Score=71.77 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=34.8
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHH--------HHHHcCCCEEEEcCCCCCCCC
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICS--------IAEQKEVDFVLLGGDLFHENK 66 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~--------~A~~~~VD~VLlaGDLFd~~~ 66 (627)
...-+|+++||+|+|..... ..+.++.|-+.|. .....++..||+|||+++...
T Consensus 198 ~~~~~ialVSGL~igs~~~~---~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~~ 259 (476)
T 3e0j_A 198 DTDRFVLLVSGLGLGGGGGE---SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHST 259 (476)
T ss_dssp SSCCEEEEECCCCBTSSCHH---HHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC--
T ss_pred CCCCEEEEECCcccCCCccc---chHHHHHHHHHHcCCCCCccccchhhceeEEEEECCcccccc
Confidence 35579999999999965311 1223444433321 334568999999999998853
No 45
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=97.40 E-value=0.0011 Score=67.36 Aligned_cols=186 Identities=16% Similarity=0.115 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
||||++.|+= |.. -+.++...+...+++. |++|+.|+-+-...+-.. ...+.|..
T Consensus 1 m~ilf~GDv~-g~~---------G~~~~~~~l~~lr~~~-d~vi~nge~~~~G~g~~~---~~~~~l~~----------- 55 (255)
T 1t70_A 1 MRVLFIGDVF-GQP---------GRRVLQNHLPTIRPQF-DFVIVNMENSAGGFGMHR---DAARGALE----------- 55 (255)
T ss_dssp CEEEEECCBB-HHH---------HHHHHHHHHHHHGGGC-SEEEEECTBTTTTSSCCH---HHHHHHHH-----------
T ss_pred CEEEEEeccC-ChH---------HHHHHHHHHHHHHhhC-CEEEECCCCccCCcCCCH---HHHHHHHh-----------
Confidence 8999999985 422 1456777888887777 988876665443333322 23344443
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCC--ce---eeccceeecCCCccceeE
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACN--LV---NYFGKMVLGGSGVGEITV 167 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~g--lV---n~fg~~~l~~~~~~~i~~ 167 (627)
.++-++++ |||+.-.+ + .++.|.... .+ ||--.. .. .
T Consensus 56 ------------------------~G~Da~Tl-GNHefD~~-~---l~~~l~~~~~~~~~~aN~~~~~---~p--g---- 97 (255)
T 1t70_A 56 ------------------------AGAGCLTL-GNHAWHHK-D---IYPMLSEDTYPIVRPLNYADPG---TP--G---- 97 (255)
T ss_dssp ------------------------HTCSEEEC-CTTTTSST-T---HHHHHHTTCSCEECCSCCCCTT---CS--S----
T ss_pred ------------------------CCCCEEEe-ccccccCc-h---HHHHHhhCCCcEEEEeccCCCC---CC--C----
Confidence 35666666 99998754 2 234444443 11 221000 00 0
Q ss_pred EE-EEEeeCCeeEEEEecCCCCHHHHHhhhcChh-HHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcC
Q 006878 168 YP-ILIRKGSTAVALYGLGNIRDERLNRMFQTPH-AVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (627)
Q Consensus 168 ~P-ill~kg~~~valyGl~~i~derl~~~f~~~~-~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~ 245 (627)
.| ..+++++.+|++.|+--. ..+. .|.++- .++.+.++. .-.+-|++.|.... .....-...++..
T Consensus 98 ~g~~I~~~~G~kIgVigl~g~--~~~~-~~~~p~~~~~~~v~~l------~~d~IIv~~H~e~t---~Ek~~la~~~dg~ 165 (255)
T 1t70_A 98 VGWRTFDVNGEKLTVVNLLGR--VFME-AVDNPFRTMDALLERD------DLGTVFVDFHAEAT---SEKEAMGWHLAGR 165 (255)
T ss_dssp CSEEEEECSSSEEEEEEEECC--TTSC-CCSCHHHHHHHHTTCS------SCCEEEEEEECSCH---HHHHHHHHHHTTS
T ss_pred CCeEEEEECCEEEEEEEeecC--cCcc-cccCHHHHHHHHHHHh------CCCEEEEEeCCCCh---HHHHHHHHhCCCC
Confidence 12 345678889999886211 0000 123220 111111111 23478999996321 1100011245566
Q ss_pred CCEEEcCCccccccCCeecCCCCceEec
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~y 273 (627)
+|+|+-||.|....+++.+++...++.+
T Consensus 166 vd~VvGgHTHv~~~d~~il~~gt~~i~d 193 (255)
T 1t70_A 166 VAAVIGTHTHVPTADTRILKGGTAYQTD 193 (255)
T ss_dssp SSEEEEESSCSCBSCCEEETTTEEEESC
T ss_pred eEEEEeCCCCcCCCceEEcCCCeEEEEc
Confidence 9999999999988776655442233343
No 46
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=97.37 E-value=0.00018 Score=75.93 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=51.7
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHH--------cCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHh
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQ--------KEVDFVLLGGDLFHENKPSRSTLVKAIEILRRH 82 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~--------~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l 82 (627)
..|||++++|+|-. +..|.++++.+.. .++|.+|+.||++|...-+.+ ++++|..+
T Consensus 69 ~~~~i~vigDiHG~------------~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~e----vl~~l~~l 132 (342)
T 2z72_A 69 GIKKVVALSDVHGQ------------YDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNE----VLWFMYQL 132 (342)
T ss_dssp CCCEEEEECCCTTC------------HHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHH----HHHHHHHH
T ss_pred CCCCEEEEECCCCC------------HHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHH----HHHHHHHH
Confidence 46899999999943 3557777766532 158999999999998755544 44455443
Q ss_pred hcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 83 CLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 83 ~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
.. ++ ...+.+|++|.||||..
T Consensus 133 ~~------------~~----------------~~~~~~v~~v~GNHE~~ 153 (342)
T 2z72_A 133 DQ------------QA----------------RDAGGMVHLLMGNHEQM 153 (342)
T ss_dssp HH------------HH----------------HHTTCEEEECCCHHHHH
T ss_pred HH------------HH----------------hhCCCeEEEEecCCcHH
Confidence 10 00 01245799999999963
No 47
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=97.16 E-value=0.0081 Score=60.86 Aligned_cols=183 Identities=17% Similarity=0.204 Sum_probs=99.4
Q ss_pred eEEEEEcCC--CCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCChHHHHHHHHHHHHhhcCCCcc
Q 006878 13 VRILVATDC--HLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (627)
Q Consensus 13 mKILh~SD~--HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~ 89 (627)
||||++.|+ |-| +..+...+...+++. |++|+ +||.|+..-.+. ...+.|.+
T Consensus 1 m~ilfiGDi~g~~G------------~~~v~~~l~~lr~~~-d~vi~ngen~~~G~g~~~----~~~~~l~~-------- 55 (252)
T 2z06_A 1 MRVLFIGDVMAEPG------------LRAVGLHLPDIRDRY-DLVIANGENAARGKGLDR----RSYRLLRE-------- 55 (252)
T ss_dssp CEEEEECCBCHHHH------------HHHHHHHHHHHGGGC-SEEEEECTTTTTTSSCCH----HHHHHHHH--------
T ss_pred CEEEEEEecCCccc------------HHHHHHHHHHHHhhC-CEEEEeCCCccCCCCcCH----HHHHHHHh--------
Confidence 899999998 444 456788888888877 98776 456666654332 23334433
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCCCCCcchHHHHhhhCCce---eeccceeecCCCcccee
Q 006878 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLV---NYFGKMVLGGSGVGEIT 166 (627)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~~~~~ls~ldiL~~~glV---n~fg~~~l~~~~~~~i~ 166 (627)
.++-++ ..|||..-.+ + .++.|....++ ||-.. ..
T Consensus 56 ---------------------------~G~D~~-T~GNHefD~~-~---l~~~l~~~~~vrpaN~~~~----~p------ 93 (252)
T 2z06_A 56 ---------------------------AGVDLV-SLGNHAWDHK-E---VYALLESEPVVRPLNYPPG----TP------ 93 (252)
T ss_dssp ---------------------------HTCCEE-ECCTTTTSCT-T---HHHHHHHSSEECCTTSCSS----CS------
T ss_pred ---------------------------CCCCEE-EeccEeeECc-h---HHHHhccCCceEeecCCCC----CC------
Confidence 356665 4599998764 2 22344332211 11100 00
Q ss_pred EEE-EEEeeCCeeEEEEecCCCCHHHHHhhhcChhHHhhcChhhhhhhcCCCceEEEEEccCCCCCCCccccccccCCcC
Q 006878 167 VYP-ILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEECQVSDWFNILVLHQNRVKTNPKNAINEHFLPRF 245 (627)
Q Consensus 167 ~~P-ill~kg~~~valyGl~~i~derl~~~f~~~~~v~~l~p~~~~~~~~~~~fnILv~Hq~~~~~~~~~~i~e~~lp~~ 245 (627)
..| ..+++++.+|++.|+--.. -+ ..|.++ +..++.... ... -.+-|+++|..... ....-..+++..
T Consensus 94 g~~~~i~~~~G~kIgVi~l~g~~--~~-~~~~~p--f~~~~~~v~-~lk--~d~IIv~~H~g~ts---ek~~la~~~dg~ 162 (252)
T 2z06_A 94 GKGFWRLEVGGESLLFVQVMGRI--FM-DPLDDP--FRALDRLLE-EEK--ADYVLVEVHAEATS---EKMALAHYLDGR 162 (252)
T ss_dssp SCSEEEEEETTEEEEEEEEECCT--TS-CCCCCH--HHHHHHHHH-HCC--CSEEEEEEECSCHH---HHHHHHHHHBTT
T ss_pred CCCeEEEEECCEEEEEEEccccc--Cc-cccCCH--HHHHHHHHH-HhC--CCEEEEEeCCCcHH---HHHHHHHhCCCC
Confidence 012 3467788999998762110 00 012222 111111110 111 34789999975311 101111235556
Q ss_pred CCEEEcCCccccccCCeecCCCCceEec
Q 006878 246 LDFVVWGHEHECLIDPQEVPGMGFHLTQ 273 (627)
Q Consensus 246 ~DyVa~GH~H~~~i~pq~~~~~~~~i~y 273 (627)
+|+|+-||.|....+|+.+++...++.+
T Consensus 163 Vd~VvGgHTHv~t~d~~il~~gt~~itd 190 (252)
T 2z06_A 163 ASAVLGTHTHVPTLDATRLPKGTLYQTD 190 (252)
T ss_dssp BSEEEEESSCSCBSCCEECTTSCEEESC
T ss_pred eEEEEcCCCCcCCCccEEcCCCcEeecC
Confidence 9999999999988877766543344444
No 48
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=97.10 E-value=0.00073 Score=70.50 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccce
Q 006878 12 TVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQF 91 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~ 91 (627)
.++|.+++|+| |. +..|.++++.+.....|.+|+.||++|...-|.+ ++.+|..+..
T Consensus 49 ~~~i~viGDIH-G~-----------~~~L~~ll~~~~~~~~~~~vflGD~VDRG~~s~e----vl~lL~~lk~------- 105 (309)
T 2ie4_C 49 RCPVTVCGDVH-GQ-----------FHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVE----TVTLLVALKV------- 105 (309)
T ss_dssp CSSEEEECCCT-TC-----------HHHHHHHHHHHCCTTTSCEEECSCCSSSSTTHHH----HHHHHHHHHH-------
T ss_pred cCCEEEEecCC-CC-----------HHHHHHHHHHcCCCCCCEEEEeCCccCCCCChHH----HHHHHHHHHh-------
Confidence 37899999999 52 4567888877766677889999999998765554 4455554310
Q ss_pred eeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCCC
Q 006878 92 QVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDPA 132 (627)
Q Consensus 92 ~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p~ 132 (627)
...-.|+++.||||...
T Consensus 106 ------------------------~~p~~v~~lrGNHE~~~ 122 (309)
T 2ie4_C 106 ------------------------RYRERITILRGNHESRQ 122 (309)
T ss_dssp ------------------------HCTTTEEECCCTTSSTT
T ss_pred ------------------------hCCCcEEEEeCCCCHHH
Confidence 11235999999999864
No 49
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.98 E-value=0.0012 Score=72.16 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcc
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKE-VDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPV 89 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~-VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~ 89 (627)
..|||++++|+|-- +..+.++++.+.... .|.+|+.||++|...-+.+++ .+|..+.
T Consensus 211 ~~~~~~vigDiHG~------------~~~l~~~l~~~~~~~~~~~~v~lGD~vdrG~~s~e~~----~~l~~l~------ 268 (477)
T 1wao_1 211 ETEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVI----LTLFGFK------ 268 (477)
T ss_dssp SSCEEEEECBCTTC------------HHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHH----HHHHHHH------
T ss_pred CCcceEEEeCCCCC------------HHHHHHHHHHcCCCCCcCeEEEeccccCCCcchHHHH----HHHHHHH------
Confidence 46899999999943 456777777665443 466999999999876665544 4444321
Q ss_pred ceeeechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 90 QFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 90 ~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
+ ..+-.|++|.||||..
T Consensus 269 ------------------~-------~~~~~~~~lrGNHE~~ 285 (477)
T 1wao_1 269 ------------------L-------LYPDHFHLLRGNHETD 285 (477)
T ss_dssp ------------------H-------HSTTTEEEECCTTSSH
T ss_pred ------------------h-------hCCCceEeecCCccHH
Confidence 0 1235799999999964
No 50
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=96.91 E-value=0.0013 Score=69.25 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCcccee
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQ 92 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~ 92 (627)
++|.+++|+|-- +..|.++++.+.....|-+|+.||+.|...-|.+ ++.+|..+..
T Consensus 57 ~~i~viGDIHG~------------~~~L~~ll~~~g~~~~~~~vflGD~VDRG~~s~e----vl~lL~~lk~-------- 112 (330)
T 1fjm_A 57 APLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLE----TICLLLAYKI-------- 112 (330)
T ss_dssp SSEEEECBCTTC------------HHHHHHHHHHHCSTTSSCEEECSCCSSSSSCHHH----HHHHHHHHHH--------
T ss_pred CceEEecCCCCC------------HHHHHHHHHHhCCCCcceEEeCCCcCCCCCChHH----HHHHHHHhhh--------
Confidence 689999999943 4667888887766667889999999998765555 4455544310
Q ss_pred eechhhhhcccccCccccCCCCCCCCCcEEEEcCCCCCC
Q 006878 93 VVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSIHGNHDDP 131 (627)
Q Consensus 93 ~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I~GNHD~p 131 (627)
...-.|+++.||||..
T Consensus 113 -----------------------~~p~~v~~lrGNHE~~ 128 (330)
T 1fjm_A 113 -----------------------KYPENFFLLRGNHECA 128 (330)
T ss_dssp -----------------------HSTTTEEECCCTTSSH
T ss_pred -----------------------hcCCceEEecCCchHh
Confidence 1123599999999975
No 51
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=96.82 E-value=0.0025 Score=66.65 Aligned_cols=51 Identities=20% Similarity=0.237 Sum_probs=37.3
Q ss_pred CCceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCChHHH
Q 006878 10 ANTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTL 72 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~tl 72 (627)
...+||.+++|+|-- +..|.++++.+..... +.+|+.||++|...-|.+++
T Consensus 57 p~~~ri~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl 108 (315)
T 3h63_A 57 KETEKITVCGDTHGQ------------FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVI 108 (315)
T ss_dssp CTTCEEEEECCCTTC------------HHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHH
T ss_pred CCCceEEEEecCCCC------------HHHHHHHHHHhCCCCCCCEEEEeCCccCCCcChHHHH
Confidence 356899999999944 4567777776644333 55999999999986665544
No 52
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=96.72 E-value=0.0023 Score=66.49 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=38.6
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl 72 (627)
++|.+++|+|-- +..|.++++.+.....|.+|+.||++|...-+.+++
T Consensus 56 ~~i~viGDIHG~------------~~~L~~ll~~~g~~~~~~~vfLGD~VDrG~~s~evl 103 (299)
T 3e7a_A 56 APLKICGDIHGQ------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETI 103 (299)
T ss_dssp SSEEEECBCTTC------------HHHHHHHHHHHCSTTSSCEEECSCCSSSSSCHHHHH
T ss_pred CCEEEEecCCCC------------HHHHHHHHHHhCCCCCccEEeCCcccCCCCCcHHHH
Confidence 579999999954 567888888877667788999999999987666543
No 53
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0034 Score=66.21 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=38.1
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCC-CEEEEcCCCCCCCCCChHHHH
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEV-DFVLLGGDLFHENKPSRSTLV 73 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~V-D~VLlaGDLFd~~~Ps~~tl~ 73 (627)
..|||.+++|+|-- +..|.++++.+..... +.+|+.||+.|...-|.+++.
T Consensus 62 ~~~ri~viGDIHG~------------~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~ 113 (335)
T 3icf_A 62 PDVKISVCGDTHGQ------------FYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVAL 113 (335)
T ss_dssp TTCEEEEECCCTTC------------HHHHHHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHH
T ss_pred cCceEEEEecCCCC------------HHHHHHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHH
Confidence 67999999999965 4567777777644433 469999999999876665443
No 54
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=96.48 E-value=0.0039 Score=66.16 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl 72 (627)
++|.+++|+|-- +..|.++++.+.....|.+|+.||+.|...-+.+++
T Consensus 70 ~pi~ViGDIHG~------------~~dL~~ll~~~g~~~~~~~vfLGD~VDRG~~s~Evl 117 (357)
T 3ll8_A 70 APVTVCGDIHGQ------------FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECV 117 (357)
T ss_dssp SSEEEECCCTTC------------HHHHHHHHHHHCCTTTCCEEECSCCSSSSTTHHHHH
T ss_pred ccceeeccCCCC------------HHHHHHHHHhcCCCCCcEEEECCCccCCCcChHHHH
Confidence 579999999954 456778888776677899999999999986665543
No 55
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=96.48 E-value=0.0038 Score=69.15 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHH
Q 006878 13 VRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTL 72 (627)
Q Consensus 13 mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl 72 (627)
++|.+++|+|-- +..|.++++.+.....|.+|+.||+.|...-+.+++
T Consensus 83 ~pI~VIGDIHGq------------~~dL~~LL~~~g~p~~d~yVFLGDyVDRGp~S~Evl 130 (521)
T 1aui_A 83 APVTVCGDIHGQ------------FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECV 130 (521)
T ss_dssp SSEEEECCCTTC------------HHHHHHHHHHHCCTTTCCEEECSCCSSSSSCHHHHH
T ss_pred cceeeccCCCCC------------HHHHHHHHHhcCCCCcceEEEcCCcCCCCCCHHHHH
Confidence 679999999943 566778887655456799999999999986665544
No 56
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=96.38 E-value=0.00057 Score=61.64 Aligned_cols=16 Identities=88% Similarity=1.633 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 006878 584 TRGRGRGRGRGRGRGA 599 (627)
Q Consensus 584 ~~~~~~~~~rgr~~~~ 599 (627)
|||||||||||||||.
T Consensus 101 g~grgrgrg~gr~~~~ 116 (119)
T 1b34_A 101 GRGRGRGRGRGRGRGG 116 (119)
T ss_dssp ----------------
T ss_pred CCcCCCCCCCCCCCCC
Confidence 4444444555555554
No 57
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=95.13 E-value=0.0037 Score=56.33 Aligned_cols=16 Identities=88% Similarity=1.610 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 006878 584 TRGRGRGRGRGRGRGA 599 (627)
Q Consensus 584 ~~~~~~~~~rgr~~~~ 599 (627)
|||||||||||||||+
T Consensus 97 ~~~~g~grgrgrg~gr 112 (119)
T 1b34_A 97 GRGRGRGRGRGRGRGR 112 (119)
T ss_dssp ----------------
T ss_pred CCCCCCcCCCCCCCCC
Confidence 5666666666666663
No 58
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=94.15 E-value=0.067 Score=59.56 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHEN 65 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~ 65 (627)
..+||+++||.|..... +.++..+. +.++||||+.||++-..
T Consensus 115 ~~~rfa~~sc~~~~~g~---------~~~~~~ia----~~~~D~vlhlGD~iY~d 156 (527)
T 2yeq_A 115 PQMTFAFASCQQYEHGY---------YTAYKHMA----KEKLDLVFHLGDYIYEY 156 (527)
T ss_dssp CCEEEEEECCCCGGGCC---------CHHHHHHT----TSCCSEEEECSCSSCCC
T ss_pred CCeEEEEEecCCCCCCc---------cHHHHHHH----hcCCCEEEecCCcccCC
Confidence 57999999999862111 23444443 47999999999998443
No 59
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.13 Score=56.32 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCCCCCCCchhchhcHHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCCC
Q 006878 11 NTVRILVATDCHLGYMEKDEIRRHDSFEAFEEICSIAEQK-EVDFVLLGGDLFHENKP 67 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~~r~~Ds~~tFeeil~~A~~~-~VD~VLlaGDLFd~~~P 67 (627)
..++|+++|.-+-....-+ |.-|.++++.+.++ +||++|+.|.+.|...|
T Consensus 146 ~~l~ivvAsGPyT~sdnl~-------yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp 196 (460)
T 3flo_A 146 SSLKVIVTCGPYFANDNFS-------LELLQEFIDSINNEVKPHVLIMFGPFIDITHP 196 (460)
T ss_dssp SCEEEEEEESCCSCSSCCC-------CHHHHHHHHHCCCCCCCSEEEEESCSSBTTCH
T ss_pred CCcEEEEEeCCccCCCccC-------hHHHHHHHHHHHhccCCCEEEEecCcccccCc
Confidence 6799999999887653222 56789999998885 89999999999998765
No 60
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=79.99 E-value=0.92 Score=42.85 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=25.8
Q ss_pred CceEEEEEccCCCCCCCcc------ccccccCCcCCCEEEcCCcccccc
Q 006878 217 DWFNILVLHQNRVKTNPKN------AINEHFLPRFLDFVVWGHEHECLI 259 (627)
Q Consensus 217 ~~fnILv~Hq~~~~~~~~~------~i~e~~lp~~~DyVa~GH~H~~~i 259 (627)
+..+|+++|++........ .+.+.+....+|++++||+|.+..
T Consensus 105 ~~~~i~~~H~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi~GHtH~~~~ 153 (195)
T 1xm7_A 105 KGKRILLSHYPAKDPITERYPDRQEMVREIYFKENCDLLIHGHVHWNRE 153 (195)
T ss_dssp TTEEEEEESSCSSCSSCCSCHHHHHHHHHHHHHTTCSEEEECCCCCCSC
T ss_pred CCcEEEEEccCCcCCCcccccchHHHHHHHHHHcCCcEEEECCcCCCCc
Confidence 3468999999754321110 000111123589999999999764
No 61
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=62.30 E-value=4.7 Score=38.69 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=22.7
Q ss_pred cCCCEEEcCCccccccCCeecCCCCceEecCCCc
Q 006878 244 RFLDFVVWGHEHECLIDPQEVPGMGFHLTQPGSS 277 (627)
Q Consensus 244 ~~~DyVa~GH~H~~~i~pq~~~~~~~~i~ypGS~ 277 (627)
.+.|+|+.||+|.... .... +..++.|||.
T Consensus 177 ~~~~~vv~GHth~~~~--~~~~--~~~~in~Gs~ 206 (221)
T 1g5b_A 177 KGADTFIFGHTPAVKP--LKFA--NQMYIDTGAV 206 (221)
T ss_dssp BTSSEEEECSSCCSSC--EEET--TEEECCCCHH
T ss_pred cCCCEEEECCCCCccc--eeeC--CEEEEECCCC
Confidence 4579999999998753 3333 4688999985
No 62
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=47.54 E-value=33 Score=34.04 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=30.9
Q ss_pred HHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEEE
Q 006878 45 SIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFSI 124 (627)
Q Consensus 45 ~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~I 124 (627)
+.+.+.+.|+|+++|. ..-....+..+++.+++ ..+||+.-
T Consensus 30 ~~~~~~GtDaI~vGgs----~gvt~~~~~~~v~~ik~-----------------------------------~~~Piil~ 70 (235)
T 3w01_A 30 DAICMSQTDAIMIGGT----DDVTEDNVIHLMSKIRR-----------------------------------YPLPLVLE 70 (235)
T ss_dssp HHHHTSSCSEEEECCS----SCCCHHHHHHHHHHHTT-----------------------------------SCSCEEEE
T ss_pred HHHHHcCCCEEEECCc----CCcCHHHHHHHHHHhcC-----------------------------------cCCCEEEe
Confidence 3356889999999992 22334434444444432 36899999
Q ss_pred cCCCCC
Q 006878 125 HGNHDD 130 (627)
Q Consensus 125 ~GNHD~ 130 (627)
+||++.
T Consensus 71 p~~~~~ 76 (235)
T 3w01_A 71 ISNIES 76 (235)
T ss_dssp CCCSTT
T ss_pred cCCHHH
Confidence 999754
No 63
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=44.89 E-value=16 Score=31.70 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=31.8
Q ss_pred CCCCceEEEEEcCCCCCCCC-------CchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 006878 8 DIANTVRILVATDCHLGYME-------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (627)
Q Consensus 8 ~~~~~mKILh~SD~HLG~~~-------~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd 63 (627)
....|||||++.|...-... .+....-......+++++.+.+..+|+||+-=++-+
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~ 78 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPV 78 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSS
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCC
Confidence 45678999999886542110 000001112234577888888899999998766644
No 64
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=44.76 E-value=39 Score=29.29 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCCEEEEc
Q 006878 40 FEEICSIAEQKEVDFVLLG 58 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLla 58 (627)
-++|++.|.++++|+|+++
T Consensus 98 ~~~I~~~a~~~~~dliV~G 116 (150)
T 3tnj_A 98 REEIIRIAEQENVDLIVVG 116 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 3667777777777877776
No 65
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=40.58 E-value=31 Score=34.00 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=31.3
Q ss_pred HHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhhcCCCccceeeechhhhhcccccCccccCCCCCCCCCcEEE
Q 006878 44 CSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHCLNDRPVQFQVVSDQAVNFQNKFGHVNYEDPHFNVGLPVFS 123 (627)
Q Consensus 44 l~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~~g~~p~~~~~lsd~~~~f~~~~~~vNy~d~n~~~~iPVf~ 123 (627)
++.+.+.+.|+|+++| +..-..+.+..+++.+++ ..+||+.
T Consensus 24 ~~~~~~~GtD~i~vGG----s~gvt~~~~~~~v~~ik~-----------------------------------~~~Pvvl 64 (228)
T 3vzx_A 24 LEILCESGTDAVIIGG----SDGVTEDNVLRMMSKVRR-----------------------------------FLVPCVL 64 (228)
T ss_dssp HHHHHTSSCSEEEECC----CSCCCHHHHHHHHHHHTT-----------------------------------SSSCEEE
T ss_pred HHHHHHcCCCEEEECC----cCCCCHHHHHHHHHHhhc-----------------------------------cCCCEEE
Confidence 3445688999999999 222334444444444432 3689999
Q ss_pred EcCCCCC
Q 006878 124 IHGNHDD 130 (627)
Q Consensus 124 I~GNHD~ 130 (627)
-+||++.
T Consensus 65 fp~~~~~ 71 (228)
T 3vzx_A 65 EVSAIEA 71 (228)
T ss_dssp ECSCGGG
T ss_pred eCCCHHH
Confidence 9999753
No 66
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=39.89 E-value=62 Score=28.42 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=9.9
Q ss_pred CCCcEEEEcCCC
Q 006878 117 VGLPVFSIHGNH 128 (627)
Q Consensus 117 ~~iPVf~I~GNH 128 (627)
..+||++++..|
T Consensus 150 ~~~pVlvv~~~~ 161 (162)
T 1mjh_A 150 SNKPVLVVKRKN 161 (162)
T ss_dssp CCSCEEEECCCC
T ss_pred CCCCEEEEeCCC
Confidence 579999998765
No 67
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=37.44 E-value=53 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCC
Q 006878 40 FEEICSIAEQKEVDFVLLGGD 60 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGD 60 (627)
-++|++.|.+.++|+|+++--
T Consensus 91 ~~~I~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 91 GQVLSDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp HHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 578888999999999988754
No 68
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=35.98 E-value=58 Score=30.52 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=20.9
Q ss_pred hcHHHHHHHHHHHHHHc-CCCEEEEcCCC
Q 006878 34 HDSFEAFEEICSIAEQK-EVDFVLLGGDL 61 (627)
Q Consensus 34 ~Ds~~tFeeil~~A~~~-~VD~VLlaGDL 61 (627)
.|....+.+.+..+.++ ++|+||.+|=+
T Consensus 63 ~Dd~~~I~~al~~a~~~~~~DlVittGG~ 91 (178)
T 2pjk_A 63 PDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 35566777777777665 59999999865
No 69
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.09 E-value=41 Score=33.85 Aligned_cols=11 Identities=0% Similarity=0.148 Sum_probs=4.4
Q ss_pred ccccccCcccc
Q 006878 547 DTTQISDTKSA 557 (627)
Q Consensus 547 ~~~~~~~~~~a 557 (627)
..|.|..-+++
T Consensus 63 ~~m~L~~L~p~ 73 (257)
T 3bbo_N 63 NVFRLDNLGPQ 73 (257)
T ss_dssp --CCCSSSCCC
T ss_pred CceecccCcCC
Confidence 44555544444
No 70
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=30.16 E-value=66 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCCEEEEcC
Q 006878 39 AFEEICSIAEQKEVDFVLLGG 59 (627)
Q Consensus 39 tFeeil~~A~~~~VD~VLlaG 59 (627)
..++|++.|.+.++|+|+++-
T Consensus 94 ~~~~I~~~a~~~~~dliV~G~ 114 (143)
T 3fdx_A 94 PKDKILALAKSLPADLVIIAS 114 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEES
T ss_pred hHHHHHHHHHHhCCCEEEEeC
Confidence 457788888888888888875
No 71
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=29.98 E-value=1e+02 Score=27.15 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=11.7
Q ss_pred CCCCcEEEEcCCCCCC
Q 006878 116 NVGLPVFSIHGNHDDP 131 (627)
Q Consensus 116 ~~~iPVf~I~GNHD~p 131 (627)
+..+||++++...+..
T Consensus 146 ~~~~PVlvv~~~~~~~ 161 (170)
T 2dum_A 146 KTKKPVLIIKEVDENE 161 (170)
T ss_dssp HCSSCEEEECCCCCC-
T ss_pred hCCCCEEEEccCCccc
Confidence 3579999999776654
No 72
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=28.72 E-value=2e+02 Score=27.88 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=45.3
Q ss_pred ceEEE-EEcCCCCCCC--CCchhchhcHHHHHHHHHHHHHHcCCCEEEEcC-CCCCCCCCChHHHHHHHHHHHHhh
Q 006878 12 TVRIL-VATDCHLGYM--EKDEIRRHDSFEAFEEICSIAEQKEVDFVLLGG-DLFHENKPSRSTLVKAIEILRRHC 83 (627)
Q Consensus 12 ~mKIL-h~SD~HLG~~--~~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaG-DLFd~~~Ps~~tl~~~~~lLr~l~ 83 (627)
.+++. +.+..|.++. ..++..+......|++.++.|.+.++..|++.| +.+. .........++++.|+++|
T Consensus 79 gl~i~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~-~~~~~~~~~~~~~~l~~l~ 153 (295)
T 3cqj_A 79 GVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYY-QEANNETRRRFRDGLKESV 153 (295)
T ss_dssp CCEEEEEEEGGGGTSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSS-SCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCc-CcCHHHHHHHHHHHHHHHH
Confidence 35554 2223443332 234555666788899999999999999998864 3321 2234566777777777764
No 73
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=26.11 E-value=92 Score=30.06 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=38.6
Q ss_pred chhchhcHHHHHHHHHHHHHHcCCCEEEE-cCCCCCCCCCChHHHHHHHHHHHHhh
Q 006878 29 DEIRRHDSFEAFEEICSIAEQKEVDFVLL-GGDLFHENKPSRSTLVKAIEILRRHC 83 (627)
Q Consensus 29 d~~r~~Ds~~tFeeil~~A~~~~VD~VLl-aGDLFd~~~Ps~~tl~~~~~lLr~l~ 83 (627)
++..++.....+++.++.|.+.+++.|++ +| .....+....+..+.+.|++++
T Consensus 84 ~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g--~~~~~~~~~~~~~~~~~l~~l~ 137 (269)
T 3ngf_A 84 ISGREQEFRDNVDIALHYALALDCRTLHAMSG--ITEGLDRKACEETFIENFRYAA 137 (269)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTCCEEECCBC--BCTTSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCCEEEEccC--CCCCCCHHHHHHHHHHHHHHHH
Confidence 44455677888999999999999998876 67 3333344556777777777764
No 74
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=25.84 E-value=1.6e+02 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCC
Q 006878 38 EAFEEICSIAEQKEVDFVLLGGDL 61 (627)
Q Consensus 38 ~tFeeil~~A~~~~VD~VLlaGDL 61 (627)
..+.+.+..|.+.++|+||.+|=+
T Consensus 53 ~~i~~al~~a~~~~~DlVittGG~ 76 (164)
T 3pzy_A 53 SPVGEALRKAIDDDVDVILTSGGT 76 (164)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 777777777776689999999965
No 75
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=25.01 E-value=1.8e+02 Score=23.97 Aligned_cols=54 Identities=15% Similarity=-0.045 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCCCCC-Cchhc----hhcHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 006878 10 ANTVRILVATDCHLGYME-KDEIR----RHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~-~d~~r----~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd 63 (627)
..++|||++.|...-... ..... .-......+++++.+.+..+|+||+--++-+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~ 63 (137)
T 3hdg_A 5 EVALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPK 63 (137)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSS
T ss_pred ccccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCC
Confidence 356899999886432110 00000 0011223567777778889999999766654
No 76
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=24.93 E-value=1.4e+02 Score=31.30 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHcCCCEEEEc-------CCCCCCCCCChHHHHHHHHHHHH
Q 006878 35 DSFEAFEEICSIAEQKEVDFVLLG-------GDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 35 Ds~~tFeeil~~A~~~~VD~VLla-------GDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
+...+|++++..+.+.+||+||+. ||=+-.-+-+.+...++.+.|++
T Consensus 275 ~yl~~~~~~l~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~ 328 (362)
T 3men_A 275 AFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGA 328 (362)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHh
Confidence 445789999988889999999873 44333334456666665555543
No 77
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=23.55 E-value=1.3e+02 Score=25.22 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCCCCC-Cchh---chhcHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 006878 12 TVRILVATDCHLGYME-KDEI---RRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~-~d~~---r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd 63 (627)
++|||++.|...-... .... -.-......+++++.+.+..+|+||+-=++-+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~ 58 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSEYLVIESKNEKEALEQIDHHHPDLVILDMDIIG 58 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSEEEEESSHHHHHHHHHHHCCSEEEEETTC--
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 5788888775432110 0000 00111234567778888889999999655543
No 78
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=22.48 E-value=36 Score=21.57 Aligned_cols=6 Identities=67% Similarity=1.204 Sum_probs=3.2
Q ss_pred CCCCCC
Q 006878 583 STRGRG 588 (627)
Q Consensus 583 ~~~~~~ 588 (627)
||||+|
T Consensus 2 sgrgkg 7 (26)
T 4gqb_C 2 SGRGKG 7 (26)
T ss_pred CCCCcC
Confidence 466654
No 79
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.98 E-value=1e+02 Score=25.40 Aligned_cols=54 Identities=7% Similarity=-0.109 Sum_probs=28.5
Q ss_pred CCceEEEEEcCCCCCCCC-Cchhc----hhcHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 006878 10 ANTVRILVATDCHLGYME-KDEIR----RHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (627)
Q Consensus 10 ~~~mKILh~SD~HLG~~~-~d~~r----~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd 63 (627)
...+|||++.|.-.-... ..... .-......+++++.+.+..+|+||+-=++-+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~ 63 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC---
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCC
Confidence 346899998885432110 00000 0001223467777778889999998655543
No 80
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=21.95 E-value=1.3e+02 Score=25.55 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=11.1
Q ss_pred HHHHHH-HHHHcCCCEEEEc
Q 006878 40 FEEICS-IAEQKEVDFVLLG 58 (627)
Q Consensus 40 Feeil~-~A~~~~VD~VLla 58 (627)
.++|++ .|.+.++|+|+++
T Consensus 96 ~~~I~~~~a~~~~~dliV~G 115 (146)
T 3s3t_A 96 KHTIEDYAKQHPEIDLIVLG 115 (146)
T ss_dssp HHHHHHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHHhhcCCCEEEEC
Confidence 345555 5666666666665
No 81
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=21.93 E-value=2e+02 Score=28.53 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=44.3
Q ss_pred ceEEEEEcCCCCCCCCC--chhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHHHhh
Q 006878 12 TVRILVATDCHLGYMEK--DEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILRRHC 83 (627)
Q Consensus 12 ~mKILh~SD~HLG~~~~--d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr~l~ 83 (627)
.+++.-+ |.++... ++..++.....|++.++.|.+.++..|++.|. . ...+......+++.|++++
T Consensus 89 GL~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~--~-~~~~~~~~~~~~~~l~~l~ 156 (305)
T 3obe_A 89 GLRISSS---HLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPSL--P-RIENEDDAKVVSEIFNRAG 156 (305)
T ss_dssp TCEEEEE---BCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECCC--C-CCSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEe---eccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCCC--C-CCCCHHHHHHHHHHHHHHH
Confidence 3565433 6665332 33344566788999999999999999998763 2 2235566677777777764
No 82
>3iz6_E 40S ribosomal protein S2 (S5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_e
Probab=21.76 E-value=12 Score=37.91 Aligned_cols=6 Identities=50% Similarity=0.723 Sum_probs=2.2
Q ss_pred CCCCCC
Q 006878 591 RGRGRG 596 (627)
Q Consensus 591 ~~rgr~ 596 (627)
|||||+
T Consensus 30 ~~~~~~ 35 (274)
T 3iz6_E 30 RRGGRR 35 (274)
T ss_dssp SSSCSS
T ss_pred CCCCCC
Confidence 333333
No 83
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=21.24 E-value=92 Score=26.74 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCC
Q 006878 40 FEEICSIAEQKEVDFVLLGGDL 61 (627)
Q Consensus 40 Feeil~~A~~~~VD~VLlaGDL 61 (627)
+++++...+..++-+||+|.|.
T Consensus 26 ~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTC
T ss_pred HHHHHHHHHcCCceEEEEeCCC
Confidence 5778888888999999999997
No 84
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=21.18 E-value=5.1e+02 Score=25.84 Aligned_cols=39 Identities=38% Similarity=0.465 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCChHHHHHHHHHHH
Q 006878 37 FEAFEEICSIAEQKEVDFVLLGGDLFHENKPSRSTLVKAIEILR 80 (627)
Q Consensus 37 ~~tFeeil~~A~~~~VD~VLlaGDLFd~~~Ps~~tl~~~~~lLr 80 (627)
-.+-..++++|++.+||||++.+ .+|...--..+-++|.
T Consensus 50 ~~~~~~~~~~~~~~~pDfvI~is-----PN~a~PGP~~ARE~l~ 88 (283)
T 1qv9_A 50 EAAVEMALDIAEDFEPDFIVYGG-----PNPAAPGPSKAREMLA 88 (283)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEC-----SCTTSHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhcCCCEEEEEC-----CCCCCCCchHHHHHHH
Confidence 34556677889999999999875 4444444445666664
No 85
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=21.07 E-value=1.8e+02 Score=24.58 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHcCCCEEEEc
Q 006878 35 DSFEAFEEICSIAEQKEVDFVLLG 58 (627)
Q Consensus 35 Ds~~tFeeil~~A~~~~VD~VLla 58 (627)
+.-..++++.+++.+++|+.||++
T Consensus 35 ~~~~~~~~l~~li~e~~v~~iVvG 58 (98)
T 1iv0_A 35 TLEEDVEALLDFVRREGLGKLVVG 58 (98)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEe
Confidence 445678999999999999999887
No 86
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=20.72 E-value=57 Score=28.59 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCCCCCch-h--chh---cHHHHHHHHHHHHHHcCCCEEEE
Q 006878 11 NTVRILVATDCHLGYMEKDE-I--RRH---DSFEAFEEICSIAEQKEVDFVLL 57 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~~d~-~--r~~---Ds~~tFeeil~~A~~~~VD~VLl 57 (627)
..||||++=|...-...-.. . .+- .....-++.++.+.++.+|+||+
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll 59 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII 59 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE
Confidence 46899999998764321000 0 000 11123467788889999999987
No 87
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.43 E-value=2.9e+02 Score=23.33 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCCCCCCceEEEEEcCCCCCCCC------CchhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 006878 5 PREDIANTVRILVATDCHLGYME------KDEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (627)
Q Consensus 5 ~~~~~~~~mKILh~SD~HLG~~~------~d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd 63 (627)
.......++|||++.|.-.-... .... .-......+++++.+.+..+|+||+-=++-+
T Consensus 7 ~~~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~-~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~ 70 (153)
T 3hv2_A 7 NVATVTRRPEILLVDSQEVILQRLQQLLSPLPY-TLHFARDATQALQLLASREVDLVISAAHLPQ 70 (153)
T ss_dssp CCCCCCSCCEEEEECSCHHHHHHHHHHHTTSSC-EEEEESSHHHHHHHHHHSCCSEEEEESCCSS
T ss_pred chhhccCCceEEEECCCHHHHHHHHHHhcccCc-EEEEECCHHHHHHHHHcCCCCEEEEeCCCCc
Confidence 33445567899999886532110 0000 0011234567778888899999998666644
No 88
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.28 E-value=2.9e+02 Score=23.27 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCCCCC------C-chhchhcHHHHHHHHHHHHHHcCCCEEEEcCCCCC
Q 006878 11 NTVRILVATDCHLGYME------K-DEIRRHDSFEAFEEICSIAEQKEVDFVLLGGDLFH 63 (627)
Q Consensus 11 ~~mKILh~SD~HLG~~~------~-d~~r~~Ds~~tFeeil~~A~~~~VD~VLlaGDLFd 63 (627)
.++|||++.|...-... . ....-.......+++++.+.+..+|+||+--++-+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~ 63 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPG 63 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSS
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCC
Confidence 46899998886432110 0 00000012234567778888889999999666643
No 89
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=20.22 E-value=1.5e+02 Score=30.84 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=31.8
Q ss_pred hcHHHHHHHHHHHHHHcCCCEEEEc-------CCCCCCCCCChHHHHHHHHHHHH
Q 006878 34 HDSFEAFEEICSIAEQKEVDFVLLG-------GDLFHENKPSRSTLVKAIEILRR 81 (627)
Q Consensus 34 ~Ds~~tFeeil~~A~~~~VD~VLla-------GDLFd~~~Ps~~tl~~~~~lLr~ 81 (627)
.+...+|++++..+.+.+||+||+. ||=+-.-+-+.....++.+.|++
T Consensus 256 ~~y~~~~~~~l~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~ 310 (341)
T 3q9b_A 256 SVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAA 310 (341)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHH
Confidence 3445789999998888999999873 44333333455666666555543
Done!