BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006879
         (627 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
 pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
          Length = 344

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 1   MQTRYMERSNSKRGLDSSSAEEGQPDRKRPALASVIVEALKVDSL 45
           +  + MER N  RGLD  SAE+   +  R  +  +IV  +++  +
Sbjct: 262 VSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEI 306


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,020,589
Number of Sequences: 62578
Number of extensions: 892855
Number of successful extensions: 2033
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2027
Number of HSP's gapped (non-prelim): 10
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.4 bits)