Query 006879
Match_columns 627
No_of_seqs 148 out of 174
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 11:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 91.3 0.038 1.3E-06 45.6 0.0 62 252-320 5-67 (70)
2 2kz3_A Putative uncharacterize 85.7 0.62 2.1E-05 39.8 3.8 41 268-313 16-56 (83)
3 2i1q_A DNA repair and recombin 73.1 0.97 3.3E-05 45.1 1.0 59 254-319 3-61 (322)
4 3lda_A DNA repair protein RAD5 69.4 2.4 8.1E-05 45.0 2.9 62 254-320 81-142 (400)
5 1b22_A DNA repair protein RAD5 67.1 0.95 3.3E-05 40.7 -0.5 62 255-321 24-85 (114)
6 2z43_A DNA repair and recombin 67.0 1.2 4.2E-05 44.9 0.2 57 255-318 13-69 (324)
7 3mab_A Uncharacterized protein 66.0 0.68 2.3E-05 40.3 -1.7 74 258-370 8-81 (93)
8 1v5w_A DMC1, meiotic recombina 62.2 1.7 6E-05 44.3 0.3 59 255-318 26-84 (343)
9 1pzn_A RAD51, DNA repair and r 61.0 3.4 0.00012 42.5 2.2 59 255-320 36-94 (349)
10 4dez_A POL IV 1, DNA polymeras 46.1 3 0.0001 42.9 -1.1 38 258-300 182-219 (356)
11 3pzp_A DNA polymerase kappa; D 43.9 9.5 0.00033 41.8 2.3 51 256-316 340-390 (517)
12 3osn_A DNA polymerase IOTA; ho 38.7 6 0.0002 42.1 -0.3 49 259-316 239-287 (420)
13 3im1_A Protein SNU246, PRE-mRN 37.1 14 0.00048 37.6 2.1 54 256-316 159-212 (328)
14 2aq4_A DNA repair protein REV1 36.0 11 0.00036 40.2 1.1 52 256-315 243-296 (434)
15 1t94_A Polymerase (DNA directe 35.7 14 0.00049 39.3 2.1 50 256-315 284-333 (459)
16 1inz_A EPS15-interacting porte 32.9 9.8 0.00033 35.5 0.2 15 606-624 123-137 (148)
17 1jx4_A DNA polymerase IV (fami 32.4 10 0.00034 38.9 0.2 54 256-318 180-233 (352)
18 3bq0_A POL IV, DBH, DNA polyme 29.6 12 0.00042 38.3 0.2 54 256-318 181-234 (354)
19 2q0z_X Protein Pro2281; SEC63, 29.5 33 0.0011 35.0 3.5 55 255-316 162-216 (339)
20 4f4y_A POL IV, DNA polymerase 28.3 7.7 0.00026 40.3 -1.5 48 259-315 184-231 (362)
21 1eyh_A Epsin; superhelix of he 25.3 9.7 0.00033 35.3 -1.2 15 606-624 105-119 (144)
22 1z3e_B DNA-directed RNA polyme 24.3 42 0.0014 27.8 2.5 25 270-297 22-46 (73)
23 1u9l_A Transcription elongatio 23.1 35 0.0012 28.0 1.8 51 265-320 15-65 (70)
24 3gqc_A DNA repair protein REV1 22.9 15 0.00052 40.3 -0.5 51 256-315 317-367 (504)
25 3k4g_A DNA-directed RNA polyme 22.4 47 0.0016 28.6 2.5 38 270-312 25-62 (86)
26 1xgw_A Epsin 4; ENTH, enthopro 22.2 16 0.00053 35.2 -0.5 15 606-624 135-149 (176)
27 3bqs_A Uncharacterized protein 21.2 23 0.00079 30.6 0.4 75 257-370 7-81 (93)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=91.27 E-value=0.038 Score=45.62 Aligned_cols=62 Identities=24% Similarity=0.440 Sum_probs=51.0
Q ss_pred CCccceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc-cccC
Q 006879 252 LNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT-CVLS 320 (627)
Q Consensus 252 L~DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~ 320 (627)
..|++-.|++|+..-+ ++|.++||+||+|+.. .+...|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~---~~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAE---QGIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHT---SCHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567778887777655 8999999999998765 4788898887 7999999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=85.75 E-value=0.62 Score=39.81 Aligned_cols=41 Identities=24% Similarity=0.210 Sum_probs=31.0
Q ss_pred hhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHh
Q 006879 268 FHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDH 313 (627)
Q Consensus 268 ~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~H 313 (627)
.-++|.+++|.||+||+. .|+.+|-+++ |+|-+.=-.+..|
T Consensus 16 ~~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~--~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 16 MIQLLRSHRIKTVVDLVS---ADLEEVAQKC--GLSYKALVALRRV 56 (83)
T ss_dssp HHHHHHHTTCCCHHHHTT---SCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHH
Confidence 357899999999999975 7999999999 4565544444433
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=73.15 E-value=0.97 Score=45.10 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=44.3
Q ss_pred ccceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhccccc
Q 006879 254 DEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVL 319 (627)
Q Consensus 254 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 319 (627)
+++..|++|+. ..-++|.++||+||+||+. .++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~---~~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIAT---ATVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHT---CCHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 45666775554 4669999999999999985 4677777776 6888888888888887753
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=69.38 E-value=2.4 Score=44.95 Aligned_cols=62 Identities=24% Similarity=0.229 Sum_probs=50.5
Q ss_pred ccceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccC
Q 006879 254 DEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLS 320 (627)
Q Consensus 254 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 320 (627)
.+|-+|+..|-.-..-++|.++||+||++|+. .++..|.++. |+|...=+.+++.|++++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 46778888655556679999999999999975 5888999987 68888888888888876644
No 5
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=67.10 E-value=0.95 Score=40.66 Aligned_cols=62 Identities=32% Similarity=0.395 Sum_probs=50.5
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccCC
Q 006879 255 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSG 321 (627)
Q Consensus 255 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~ 321 (627)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.+|- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68889855444467799999999999976 456788999986 789999999999999887544
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.96 E-value=1.2 Score=44.88 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccc
Q 006879 255 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 318 (627)
Q Consensus 255 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 318 (627)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888877665 4599999999999999854 455677776 567777777777777654
No 7
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=65.98 E-value=0.68 Score=40.35 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=49.0
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccCCceEEEecCCCCceEEE
Q 006879 258 RLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGVV 337 (627)
Q Consensus 258 RLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~nvgl~ 337 (627)
.|-+||+.- -+.|.+.||+||+||..+ ++ .+.|..+.++- .+ +-
T Consensus 8 dLPNig~~~--e~~L~~~GI~t~~~Lr~~---Ga------------~~ay~rLk~~~-----------------~~--~~ 51 (93)
T 3mab_A 8 ELPNIGKVL--EQDLIKAGIKTPVELKDV---GS------------KEAFLRIWEND-----------------SS--VC 51 (93)
T ss_dssp GSTTCCHHH--HHHHHHTTCCSHHHHHHH---CH------------HHHHHHHHHHC-----------------TT--CC
T ss_pred hCCCCCHHH--HHHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHhC-----------------CC--CC
Confidence 345566643 478999999999998764 22 23333332210 11 23
Q ss_pred EccccceeeeecCCeeecCCCCChHhHHHHHHH
Q 006879 338 FNNIYEFCGLIADGQYHSADSLSESQKVHVDTL 370 (627)
Q Consensus 338 FN~i~~lvG~~~~g~y~s~d~L~~~qk~~V~~L 370 (627)
+|.+|.|+|++-| +....|++..|.....+
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3mab_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHCCHHHHHHHHHH
Confidence 7888999999988 66778999988776554
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=62.23 E-value=1.7 Score=44.30 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccc
Q 006879 255 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 318 (627)
Q Consensus 255 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 318 (627)
++++|+.-|-.=..-++|.++||+||++|+. .++.+|.++. |+|...=+.+++.|..+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~---~~~~~l~~~~--~is~~~~~~~~~~a~~~~ 84 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQM---TTRRALCNVK--GLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 6889994444445669999999999999985 4566677765 567666666777776553
No 9
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=61.01 E-value=3.4 Score=42.46 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=46.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccC
Q 006879 255 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLS 320 (627)
Q Consensus 255 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 320 (627)
++.+|.+|+ -...++|.++||+||++++. .++..|-++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~--~~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVG--PATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCC--HHHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCC--HHHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 466666554 46779999999999999875 5788898887 57877778888888877643
No 10
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=46.09 E-value=3 Score=42.86 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=30.3
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHcc
Q 006879 258 RLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGS 300 (627)
Q Consensus 258 RLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~ 300 (627)
.|-+||+. .-++|...||+|++|+. ..++..|++.||.
T Consensus 182 ~l~GiG~~--~~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~ 219 (356)
T 4dez_A 182 ALWGVGPK--TTKKLAAMGITTVADLA---VTDPSVLTTAFGP 219 (356)
T ss_dssp GSTTCCHH--HHHHHHHTTCCSHHHHH---TSCHHHHHHHHCH
T ss_pred HHcCCchh--HHHHHHHcCCCeecccc---cCCHHHHHHHhCC
Confidence 34467764 44899999999999986 4689999999974
No 11
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=43.94 E-value=9.5 Score=41.76 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=38.0
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc
Q 006879 256 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 316 (627)
Q Consensus 256 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 316 (627)
|-+|-+||+.+. ++|...||+|++|+.++ +..|+..|| ...|..+.++|.-
T Consensus 340 V~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 444557776554 99999999999999885 357888875 3568877777653
No 12
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=38.67 E-value=6 Score=42.08 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=36.5
Q ss_pred eeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc
Q 006879 259 LEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 316 (627)
Q Consensus 259 LekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 316 (627)
|-+||+ ..-++|...||+|++|+.+ .++..|++.||. +....+.+||.-
T Consensus 239 l~GIG~--~t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~G 287 (420)
T 3osn_A 239 IPGIGY--KTAKCLEALGINSVRDLQT---FSPKILEKELGI----SVAQRIQKLSFG 287 (420)
T ss_dssp STTCCH--HHHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred ccCCCH--HHHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc----hHHHHHHHHhcC
Confidence 335555 4569999999999999865 588999999974 345666677753
No 13
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=37.15 E-value=14 Score=37.59 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=42.2
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc
Q 006879 256 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 316 (627)
Q Consensus 256 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 316 (627)
..-|.+|+.+-+ ++|.++||.|++||.. .+++++.++| +++++.-+.+.+-|..
T Consensus 159 L~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 159 LRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHHh
Confidence 456777777544 7799999999999865 5899999998 6888888887776653
No 14
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=35.97 E-value=11 Score=40.17 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=38.2
Q ss_pred ceeeeeeccCchhhhhhhh--cCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 006879 256 VWRLEKIGKDGSFHKRLNK--AGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 315 (627)
Q Consensus 256 VwRLekIgKdG~~hkrL~~--~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 315 (627)
|-.|-+||+ ..-++|.. .||+|++|+.++. ++..|++.||. +....+..||+
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~----~~g~~l~~~a~ 296 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS----KLGMKIHLALQ 296 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS----SHHHHHHHHTT
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH----HHHHHHHHHhc
Confidence 334445564 55689999 8999999999874 88999999974 34555566665
No 15
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=35.73 E-value=14 Score=39.35 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=37.5
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 006879 256 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 315 (627)
Q Consensus 256 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 315 (627)
|-+|-+||+.+ .++|...||+|++|+.++ +..|++.|| .+.|..+.++|+
T Consensus 284 v~~l~GiG~~~--~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHHH--HHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHHH--HHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 55666777654 489999999999998874 356999886 345666777776
No 16
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=32.87 E-value=9.8 Score=35.49 Aligned_cols=15 Identities=53% Similarity=0.716 Sum_probs=13.9
Q ss_pred hhhhhhhhhHHhhhccccc
Q 006879 606 WGIFIRKKAAERRAQLVEL 624 (627)
Q Consensus 606 WGiFIRKKAAERRAQLVEL 624 (627)
||+.||+||. +|++|
T Consensus 123 ~G~nVR~kAk----~l~~L 137 (148)
T 1inz_A 123 QGVNVREKAK----QLVAL 137 (148)
T ss_dssp CCHHHHHHHH----HHHHH
T ss_pred chHHHHHHHH----HHHHH
Confidence 8999999999 88888
No 17
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=32.37 E-value=10 Score=38.88 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=39.8
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccc
Q 006879 256 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 318 (627)
Q Consensus 256 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 318 (627)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 233 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEY 233 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCC
Confidence 455556665 4668999999999999874 688999999974 22566677776433
No 18
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=29.60 E-value=12 Score=38.31 Aligned_cols=54 Identities=26% Similarity=0.362 Sum_probs=39.5
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccc
Q 006879 256 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCV 318 (627)
Q Consensus 256 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 318 (627)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence 334445664 5668999999999999875 688999999974 22666777776433
No 19
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=29.49 E-value=33 Score=35.04 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=42.5
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcc
Q 006879 255 EVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKT 316 (627)
Q Consensus 255 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 316 (627)
...-|.+|+.+ .-++|.++||.|++||.. .++.++..+|| +++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence 45677788765 447899999999999875 78999999994 887776777665543
No 20
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=28.27 E-value=7.7 Score=40.28 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=35.4
Q ss_pred eeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 006879 259 LEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 315 (627)
Q Consensus 259 LekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 315 (627)
|-+||+. .-++|...||+|++|+.+ .++..|++.||. +....+..+|+
T Consensus 184 l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 184 IPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp STTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred ccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhCh----HHHHHHHHHhc
Confidence 3366665 458999999999999764 688999999973 34555556664
No 21
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=25.32 E-value=9.7 Score=35.31 Aligned_cols=15 Identities=53% Similarity=0.716 Sum_probs=13.5
Q ss_pred hhhhhhhhhHHhhhccccc
Q 006879 606 WGIFIRKKAAERRAQLVEL 624 (627)
Q Consensus 606 WGiFIRKKAAERRAQLVEL 624 (627)
||+.||+||. +|++|
T Consensus 105 ~G~~VR~kak----~l~~L 119 (144)
T 1eyh_A 105 QGVNVREKAK----QLVAL 119 (144)
T ss_dssp CHHHHHHHHH----HHHHH
T ss_pred hHHHHHHHHH----HHHHH
Confidence 9999999998 77777
No 22
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=24.30 E-value=42 Score=27.83 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=19.3
Q ss_pred hhhhhcCCccHHHHHHHHhhChHHHHHH
Q 006879 270 KRLNKAGIFTVEDFLRLVVRDSQRLRNI 297 (627)
Q Consensus 270 krL~~~gI~tV~dFLrl~~~d~~kLR~i 297 (627)
.-|..+||+||+|+++ +.++.|.+|
T Consensus 22 NcLkragI~Tv~dL~~---~s~~dLlki 46 (73)
T 1z3e_B 22 NCLKRAGINTVQELAN---KTEEDMMKV 46 (73)
T ss_dssp HHHHHTTCCBHHHHHT---SCHHHHHTS
T ss_pred HHHHHcCCCcHHHHHc---CCHHHHHHc
Confidence 4688899999999877 456666666
No 23
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=23.09 E-value=35 Score=28.03 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=40.8
Q ss_pred CchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccC
Q 006879 265 DGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLS 320 (627)
Q Consensus 265 dG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 320 (627)
+-..-++|..+|++||++. .+.+++.|-.|- |++...=+.+.+-|+.++..
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHHH
Confidence 4456789999999999964 556777787775 78999999999999877543
No 24
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=22.90 E-value=15 Score=40.27 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=35.7
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhc
Q 006879 256 VWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAK 315 (627)
Q Consensus 256 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 315 (627)
|-.|-+||+ ..-++|...||+|++|+. ..++..|++.||.. ....+..+|+
T Consensus 317 V~~l~GIG~--~t~~kL~~lGI~TigDLa---~~~~~~L~~~fG~~----~g~~L~~~a~ 367 (504)
T 3gqc_A 317 VTNLPGVGH--SMESKLASLGIKTCGDLQ---YMTMAKLQKEFGPK----TGQMLYRFCR 367 (504)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCBHHHHT---TSCHHHHHHHHCHH----HHHHHHHHTT
T ss_pred hhHhhCcCH--HHHHHHHHcCCCcHHHHH---hccHHHHHHhhChh----HHHHHHHHhc
Confidence 334445665 455899999999999986 46889999999752 2333445554
No 25
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=22.44 E-value=47 Score=28.57 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=24.2
Q ss_pred hhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHH
Q 006879 270 KRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVD 312 (627)
Q Consensus 270 krL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~ 312 (627)
.-|+.+||+||+|++.. +++.|.+|= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 46889999999998764 555555552 344444444443
No 26
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=22.23 E-value=16 Score=35.18 Aligned_cols=15 Identities=53% Similarity=0.725 Sum_probs=13.8
Q ss_pred hhhhhhhhhHHhhhccccc
Q 006879 606 WGIFIRKKAAERRAQLVEL 624 (627)
Q Consensus 606 WGiFIRKKAAERRAQLVEL 624 (627)
||+.||+||. +|++|
T Consensus 135 ~G~~VR~kAk----~i~~L 149 (176)
T 1xgw_A 135 QGINIRQKVK----ELVEF 149 (176)
T ss_dssp CHHHHHHHHH----HHHHH
T ss_pred hHHHHHHHHH----HHHHH
Confidence 9999999999 78877
No 27
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=21.23 E-value=23 Score=30.62 Aligned_cols=75 Identities=23% Similarity=0.358 Sum_probs=48.4
Q ss_pred eeeeeeccCchhhhhhhhcCCccHHHHHHHHhhChHHHHHHHccCCCchhHHHHHHhhcccccCCceEEEecCCCCceEE
Q 006879 257 WRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVDHAKTCVLSGKLYVYYPDDPRNVGV 336 (627)
Q Consensus 257 wRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~nvgl 336 (627)
-.|-.||+. .-+.|.+.||+||+||..+ ++. ++|..+.+. ... +
T Consensus 7 ~~LPNiG~~--~e~~L~~vGI~s~e~L~~~---Ga~------------~ay~rL~~~-----------------~~~--~ 50 (93)
T 3bqs_A 7 SELPNIGKV--LEQDLIKAGIKTPVELKDV---GSK------------EAFLRIWEN-----------------DSS--V 50 (93)
T ss_dssp GGSTTCCHH--HHHHHHHTTCCSHHHHHHH---HHH------------HHHHHHHTT-----------------CTT--C
T ss_pred hcCCCCCHH--HHHHHHHcCCCCHHHHHhC---CHH------------HHHHHHHHH-----------------CCC--C
Confidence 344556664 4488999999999998764 222 223333221 011 2
Q ss_pred EEccccceeeeecCCeeecCCCCChHhHHHHHHH
Q 006879 337 VFNNIYEFCGLIADGQYHSADSLSESQKVHVDTL 370 (627)
Q Consensus 337 ~FN~i~~lvG~~~~g~y~s~d~L~~~qk~~V~~L 370 (627)
.++.+|.|+||+-| +....|+...|....+.
T Consensus 51 c~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3bqs_A 51 CMSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp CHHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC---CCHHHCCHHHHHHHHHH
Confidence 23778889999987 77778999888776543
Done!