Query 006880
Match_columns 627
No_of_seqs 257 out of 646
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 15:48:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02337 lipoxygenase 100.0 4E-185 8E-190 1560.4 52.6 611 9-627 1-611 (866)
2 PLN02305 lipoxygenase 100.0 1E-181 3E-186 1526.5 51.7 581 35-627 82-666 (918)
3 PLN02264 lipoxygenase 100.0 3E-180 6E-185 1516.0 49.5 581 35-627 85-668 (919)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 5E-134 1E-138 1139.4 18.9 431 187-627 1-431 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 9.2E-39 2E-43 298.5 14.6 136 36-178 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.3 1.6E-11 3.5E-16 109.2 10.5 84 69-165 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 99.1 1.5E-10 3.3E-15 103.2 9.1 93 68-176 17-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 99.0 2.8E-09 6.2E-14 96.3 10.9 95 67-176 18-116 (116)
9 cd02899 PLAT_SR Scavenger rece 98.9 3.6E-09 7.7E-14 96.2 9.1 80 68-166 19-99 (109)
10 cd01753 PLAT_LOX PLAT domain o 98.8 3.7E-08 8E-13 89.9 9.4 86 68-168 19-107 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 98.6 2.8E-07 6.2E-12 84.6 11.3 94 68-176 19-118 (120)
12 cd01752 PLAT_polycystin PLAT/L 98.5 1.2E-06 2.6E-11 80.6 10.7 95 68-175 19-117 (120)
13 cd01754 PLAT_plant_stress PLAT 98.4 1.5E-06 3.3E-11 81.4 9.1 89 68-168 19-119 (129)
14 cd01757 PLAT_RAB6IP1 PLAT/LH2 98.4 2.5E-06 5.5E-11 78.3 9.9 78 68-168 20-100 (114)
15 cd01755 PLAT_lipase PLAT/ LH2 80.5 15 0.00032 34.0 9.6 77 68-161 19-105 (120)
16 cd01758 PLAT_LPL PLAT/ LH2 dom 32.9 3.8E+02 0.0082 25.6 9.6 77 69-161 21-119 (137)
17 PF03802 CitX: Apo-citrate lya 25.2 41 0.0009 33.2 1.7 57 181-255 84-141 (170)
18 KOG2080 Uncharacterized conser 24.9 31 0.00067 41.8 0.9 48 121-168 1020-1070(1295)
19 PF06232 ATS3: Embryo-specific 23.9 2.2E+02 0.0049 27.0 6.2 55 108-166 63-117 (125)
No 1
>PLN02337 lipoxygenase
Probab=100.00 E-value=3.6e-185 Score=1560.40 Aligned_cols=611 Identities=79% Similarity=1.279 Sum_probs=578.2
Q ss_pred hHhHhhhhhccCccccccccccCCCcceEEEEEEEEecccccccccccchhhHHhhhcCCcEEEEEEecccCCCCccccC
Q 006880 9 MFHKLKEKVCAWPITGTKTKGVDESKTKIKGTVVLMKKNVLDFNDMKASFLDRLHELLGKGVSMQLISAVNADPANELRG 88 (627)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~v~~~~k~~~~~~~~~~~~~d~~~~~~G~~v~lqLVS~~~~d~~tg~~g 88 (627)
|++++++.++|. +....+.++||+||+|+|+++|++++.++++|++.|++|++|+|||||++.++|+||++|
T Consensus 1 ~~~~~~~~~~~~--------~~~~~~~~~~~~v~l~~k~~ld~~~~~~~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~g 72 (866)
T PLN02337 1 MLGGIIDAITGS--------NNKTKKEKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGKGVSLQLISSTVVDPENGLRG 72 (866)
T ss_pred CcccccHhhhcC--------CccCccceEEEEEEEEEecccchhhcccchhhhHHHhcCCeEEEEEEeccccccccCCcc
Confidence 455566776653 011122489999999999999999999999999999999999999999998888898899
Q ss_pred ccCccccccccccccCCCCCceEEEEEEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCCCC
Q 006880 89 RLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHR 168 (627)
Q Consensus 89 k~s~~~~l~~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~ 168 (627)
|+++++.|++|..+.....+++++|+|+|+||++||+||||+|+|.|++||||++|+|+++|++++|||+||||||+.++
T Consensus 73 k~~k~a~l~~w~~~~~~~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~ 152 (866)
T PLN02337 73 KLGKEAYLEKWITTITSLTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKR 152 (866)
T ss_pred ccCCccchhhhccCCCCCCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCC
Confidence 99999999999976545456777999999999999999999999999999999999999999889999999999999999
Q ss_pred CccceeeecCceeccCCCChHhHHHHHHHHHhhhcCCCCCccccCeeEeccccCCCCCCCCCCCCccccCCCCCCCCCCC
Q 006880 169 YKYDRVFFSNKTYLPCQTPEPLRKYRREELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPR 248 (627)
Q Consensus 169 ~~~~riFf~nkayLP~~tp~~L~~~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~Pd~~~~~~rpvlggs~~~pyPR 248 (627)
++.+||||+||+|||++||++|+++||+||++|||||+||||+||||||||+|||||+||++++++|||||||++|||||
T Consensus 153 ~~~~RiFF~nk~ylp~~tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPR 232 (866)
T PLN02337 153 YRYDRVFFSNKTYLPSQTPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPR 232 (866)
T ss_pred CCCCceEecCCCcCcccccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcccCcCCCCcccCCCCccCccccchhhhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHhhc
Q 006880 249 RGRTGRKPTKTDPNSERRLPLISLDIYVPRDERFGHLKFSDFLAYALKSLVQILLPEITSLCDKTINEFDSFDDVLNLYE 328 (627)
Q Consensus 249 R~rTgr~~~~~d~~~e~r~~~~~~~~ylPrDe~Fs~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~~f~sf~di~~ly~ 328 (627)
||||||||+++||.+|||.+...-.+||||||+|++.|.++|.++++++++|.++|.++++++.+..+|++|+||++||.
T Consensus 233 R~rTgr~~t~~dp~~esr~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~ 312 (866)
T PLN02337 233 RGRTGRKPTKTDPNSESRLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYE 312 (866)
T ss_pred cccCCCCCCCCCCccccccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhh
Confidence 99999999999999999976531147999999999999999999999999999999999999988899999999999999
Q ss_pred CCCcCCCCccchhhccccchHHHHHhhhccCccccccCCccccccccccCcCcHHHHHHHhcCCCccccccccCCCCCCC
Q 006880 329 GGIKLPNSQTVSKIRDRIPWEMLKELVRNDGERFLKFPMPDVIKEDRSAWRTDEEFAREMLAGVNPVIISRLQEFPPASN 408 (627)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~lk~p~P~~~~~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~s~ 408 (627)
+|+.+|.++..+.+.+.+|++++|++++++++.++|||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+
T Consensus 313 ~g~~lp~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ 392 (866)
T PLN02337 313 GGIKLPNGPLLEELRKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSK 392 (866)
T ss_pred cCCCCCCchHHHHhhhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCccc
Confidence 99999987666678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcCcHHHHHhhcCcccHHHHhhcCceeEecCcccchhhhhcccCCCCccccceeEEeecCCCCeeeEEEE
Q 006880 409 LDPKVYGNQHSSITRADIERNMNELTIDEAIENKKLFTLDHHDALMPYLRRINSTNTKTYASRTLLLLQNDGTLKPLAIE 488 (627)
Q Consensus 409 Ld~~~yg~~~~~it~e~i~~~L~g~tl~~al~~grLFi~Dy~d~~lp~l~~in~~~~~~yAp~~Lffl~~~G~L~PIAIq 488 (627)
|||++||+++|+||++||+..|+|+||+|||++|||||+||||.+|||+.++|...++.|||+||||++++|+|+|||||
T Consensus 393 ld~~~yg~~~s~iT~e~v~~~L~g~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k~yA~~tLffl~~dG~L~PlAIq 472 (866)
T PLN02337 393 LDPKKYGDQNSSITEEHIEKNLEGLTVQEALEKNRLFILDHHDALMPYLRRINSTSTKTYATRTLLFLKDDGTLKPLAIE 472 (866)
T ss_pred CChhhcCCccCccCHHHHHhccCCccHHHHHHcCCEEEEecchhcCcccccccCCCCccccceeEEEECCCCCEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999887789999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCeEeeCCCCCCCCchHHHHHHHHHhcccchhhhhhhhhhccchhhHHHHHHhcCCCCccchhhhcc
Q 006880 489 LSLPHPQGDHHGAVSKVFTPAENGVEGSVWQLAKAYAAVNDSGYHQLVSHWLDTHAVIEPFVIATNRQLSVLHPIYKLLH 568 (627)
Q Consensus 489 L~~p~~~~~~~~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlvsHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~ 568 (627)
|++|++.++++++.++||||+++++++|.|+|||+||++||++|||+|+||++||++||||||||+||||++|||||||.
T Consensus 473 L~~p~~~~~~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~ 552 (866)
T PLN02337 473 LSLPHPQGDKFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLH 552 (866)
T ss_pred eccCCCCcccCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHH
Confidence 99998777777889999999987667899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHhcccCCceeeecccchhhHHHHHHHhhcccccCCCCCchhhhcC
Q 006880 569 PHFRDTMNINALARQILINAGGVLENTVFPAKYAMEMSAVSYKNWVFTEQALPADLLKR 627 (627)
Q Consensus 569 PH~r~Tl~IN~~AR~~LI~~gGiid~~f~~G~~~~el~~~~yk~w~f~~~~lP~DL~~R 627 (627)
||||+||+||++||+.||++||++|+++++|+|+++|++++|++|+|++++||+||++|
T Consensus 553 PHfr~Tl~IN~~AR~~LI~~gGiid~~~~~g~~~~els~~~yk~w~F~~~~LP~DL~~R 611 (866)
T PLN02337 553 PHFRDTMNINALARQILINAGGILESTVFPGKYALEMSSVVYKNWNFTEQALPADLIKR 611 (866)
T ss_pred HHHHHHHHHHHHHHHheeCCCCeeeeeeccchhHHHHHHHHHhcCCcccccCHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999998
No 2
>PLN02305 lipoxygenase
Probab=100.00 E-value=1.3e-181 Score=1526.54 Aligned_cols=581 Identities=44% Similarity=0.757 Sum_probs=548.2
Q ss_pred ceEEEEEEEEecccccccccccchhhHHhhhcCCcEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEE
Q 006880 35 TKIKGTVVLMKKNVLDFNDMKASFLDRLHELLGKGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFT 114 (627)
Q Consensus 35 ~~~k~~v~~~~k~~~~~~~~~~~~~d~~~~~~G~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~ 114 (627)
.++||+||+|+|+++|++++.++++|++.|++|++|+|||||++.++ +|| +||++ ++.|++|..+ ....++++.|+
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~-~~g-~gk~~-~~~l~~~~~~-~~~~~~~~~~~ 157 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEKFEDQWEYFMNGIGQGILIQLVSEEIDP-VTG-SGKSV-ESSVRGWLPK-PSNDPHIVEYA 157 (918)
T ss_pred CeEEEEEEEEeecccchhhcccchhhHHHHhhCCeEEEEEEeccccC-CCC-Ccccc-cchhhccccC-CCCCCCceEEE
Confidence 57999999999999999999999999999999999999999998655 777 89888 9999999976 33325677999
Q ss_pred EEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCCCCCccceeeecCceeccCCCChHhHHHH
Q 006880 115 ITFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFFSNKTYLPCQTPEPLRKYR 194 (627)
Q Consensus 115 v~f~v~~dfG~pgai~v~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~riFf~nkayLP~~tp~~L~~~R 194 (627)
|+|+||++||+||||+|+|.|++||||++|+|+++|+ ++|||+||||||+.++++.+||||+||+|||++||++|+++|
T Consensus 158 ~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~-g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~R 236 (918)
T PLN02305 158 ADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDD-GPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLR 236 (918)
T ss_pred EEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCC-CeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccccCeeEeccccCCCCCCCCCCCCccccCCCCCCCCCCCcCCCCCCCCCCCCCCCcccCcCCCCc
Q 006880 195 REELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSERRLPLISLDI 274 (627)
Q Consensus 195 ~~EL~~lrg~g~g~rk~~driYdyd~yndlG~Pd~~~~~~rpvlggs~~~pyPRR~rTgr~~~~~d~~~e~r~~~~~~~~ 274 (627)
|+||++|||||+||||+||||||||+|||||+||++++++|||||||+ |||||||||||||+++||.+|||..... .+
T Consensus 237 e~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~-~PYPRR~RTGR~~t~~Dp~~Esr~~~~~-~~ 314 (918)
T PLN02305 237 REDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEE-WPYPRRCRTGRPPTKKDPLCESRIEKPH-PV 314 (918)
T ss_pred HHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCC-CCCCCcCcCCCCCCCCCCcccccccCCC-Cc
Confidence 999999999999999999999999999999999999999999999987 9999999999999999999999976543 57
Q ss_pred ccCCCCccCccccchhhhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHhhcCCCcCCCCccchhhccccch--HHHH
Q 006880 275 YVPRDERFGHLKFSDFLAYALKSLVQILLPEITSLCDKTINEFDSFDDVLNLYEGGIKLPNSQTVSKIRDRIPW--EMLK 352 (627)
Q Consensus 275 ylPrDe~Fs~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~~f~sf~di~~ly~~~~~~~~~~~~~~~~~~~p~--~~~~ 352 (627)
||||||+|++.|+++|.++++|+++|.++|.|+++++.+..+|++|+||++||++|+.+|... .+.+.+ +|+ ++++
T Consensus 315 YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~-~~~~~~-~p~~~~~~~ 392 (918)
T PLN02305 315 YVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEE-PKDIGL-NPFLGNFMK 392 (918)
T ss_pred CCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchh-hhhhhc-CCchHHHHH
Confidence 999999999999999999999999999999999999988899999999999999999999731 133433 887 8999
Q ss_pred HhhhccCccccccCCccccccccccCcCcHHHHHHHhcCCCccccccccCCCCCCCCCccccCCCCCcCcHHHHHhhcCc
Q 006880 353 ELVRNDGERFLKFPMPDVIKEDRSAWRTDEEFAREMLAGVNPVIISRLQEFPPASNLDPKVYGNQHSSITRADIERNMNE 432 (627)
Q Consensus 353 ~~~~~~~~~~lk~p~P~~~~~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~s~Ld~~~yg~~~~~it~e~i~~~L~g 432 (627)
++ +.+++.+||||+|+||+.|+++|++|+|||||+|||+||++|+||++||++++|||++||+++|+||++||+..|+|
T Consensus 393 ~i-~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G 471 (918)
T PLN02305 393 QV-LSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG 471 (918)
T ss_pred Hh-hhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC
Confidence 99 78889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhcCceeEecCcccchhhhhcccCCCC-ccccceeEEeecCCCCeeeEEEEecCCCCCCCCCCCCCeEeeCCCC
Q 006880 433 LTIDEAIENKKLFTLDHHDALMPYLRRINSTNT-KTYASRTLLLLQNDGTLKPLAIELSLPHPQGDHHGAVSKVFTPAEN 511 (627)
Q Consensus 433 ~tl~~al~~grLFi~Dy~d~~lp~l~~in~~~~-~~yAp~~Lffl~~~G~L~PIAIqL~~p~~~~~~~~~~~~VftP~d~ 511 (627)
+||+|||++|||||+||||++|||+.++|...+ +.|||+||||++++|+|+||||||++++..++ ...++||||.++
T Consensus 472 ~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~--p~~~~VftP~~d 549 (918)
T PLN02305 472 MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSS--PGNKFVYTHGHD 549 (918)
T ss_pred CcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCC--CCcceeeCCCCC
Confidence 999999999999999999999999999998654 59999999999999999999999999865432 356789999876
Q ss_pred CCCCchHHHHHHHHHhcccchhhhhhhhhhccchhhHHHHHHhcCCCCccchhhhcchhhhhhhhhhHHHHHhcccCCce
Q 006880 512 GVEGSVWQLAKAYAAVNDSGYHQLVSHWLDTHAVIEPFVIATNRQLSVLHPIYKLLHPHFRDTMNINALARQILINAGGV 591 (627)
Q Consensus 512 ~~~~~~W~LAK~~v~~aD~~~HqlvsHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PH~r~Tl~IN~~AR~~LI~~gGi 591 (627)
+++.|.|+||||||++||++|||+|+||++||++|||||||||||||++|||||||.||||+||+||++||++|||+||+
T Consensus 550 ~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGi 629 (918)
T PLN02305 550 ATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGI 629 (918)
T ss_pred CCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccchhhHHHHHHHhhcc-cccCCCCCchhhhcC
Q 006880 592 LENTVFPAKYAMEMSAVSYKN-WVFTEQALPADLLKR 627 (627)
Q Consensus 592 id~~f~~G~~~~el~~~~yk~-w~f~~~~lP~DL~~R 627 (627)
||++|++|+|+|+|++++|++ |+|++++||+||++|
T Consensus 630 ie~~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kR 666 (918)
T PLN02305 630 IEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIRR 666 (918)
T ss_pred eeeeeccchhHHHHHHHHHHhcCcCccccCHHHHHHc
Confidence 999999999999999999998 999999999999998
No 3
>PLN02264 lipoxygenase
Probab=100.00 E-value=2.6e-180 Score=1516.04 Aligned_cols=581 Identities=43% Similarity=0.774 Sum_probs=547.5
Q ss_pred ceEEEEEEEEecccccccccccchhhHHhhhcCCcEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEE
Q 006880 35 TKIKGTVVLMKKNVLDFNDMKASFLDRLHELLGKGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFT 114 (627)
Q Consensus 35 ~~~k~~v~~~~k~~~~~~~~~~~~~d~~~~~~G~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~ 114 (627)
.++||+||+|+|+++|++++.++++|++.|++|++|+|||||++.++ +|| +||+|+++.|++|..+ ....+++++|+
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~-~tg-~~~~~~~a~l~~~~~~-~~~~~~~~~y~ 161 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDP-KTK-EPKKSKAAVLKDWSKK-SNIKAERVHYT 161 (919)
T ss_pred EEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccC-CCC-CccCCCcchhcccccC-CCCCCCceEEE
Confidence 57999999999999999999999999999999999999999988655 676 8999999999999876 34456677999
Q ss_pred EEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCCCCCccceeeecCceeccCCCChHhHHHH
Q 006880 115 ITFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFFSNKTYLPCQTPEPLRKYR 194 (627)
Q Consensus 115 v~f~v~~dfG~pgai~v~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~riFf~nkayLP~~tp~~L~~~R 194 (627)
|+|+||++||+||||+|+|.|++||||++|+|+++|+ ++|||+||||||++++++.+||||+||+|||++||++|+++|
T Consensus 162 ~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~-g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~R 240 (919)
T PLN02264 162 AEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFAC-GPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALR 240 (919)
T ss_pred EEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCC-CcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHHH
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccccCeeEeccccCCCCCCCCCCCCccccCCCCCCCCCCCcCCCCCCCCCCCCCCCcccCcCCCCc
Q 006880 195 REELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSERRLPLISLDI 274 (627)
Q Consensus 195 ~~EL~~lrg~g~g~rk~~driYdyd~yndlG~Pd~~~~~~rpvlggs~~~pyPRR~rTgr~~~~~d~~~e~r~~~~~~~~ 274 (627)
++||++|||||+||||+||||||||+|||||+||++++++|||||||+ |||||||||||||+++||.+|||..... .+
T Consensus 241 e~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~-~PYPRR~RTGR~~t~~dp~~Esr~~~~~-~i 318 (919)
T PLN02264 241 EKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKK-IPYPRRCRTGRLPTDSDMMAESRVEKPL-PM 318 (919)
T ss_pred HHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCC-CCCCCCCcCCCCCCCCCCcccccccCCC-ce
Confidence 999999999999999999999999999999999999999999999986 9999999999999999999999976544 57
Q ss_pred ccCCCCccCccccchhhhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHhhcCCCcCCCCccchhhccccch-HHHHH
Q 006880 275 YVPRDERFGHLKFSDFLAYALKSLVQILLPEITSLCDKTINEFDSFDDVLNLYEGGIKLPNSQTVSKIRDRIPW-EMLKE 353 (627)
Q Consensus 275 ylPrDe~Fs~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~~f~sf~di~~ly~~~~~~~~~~~~~~~~~~~p~-~~~~~ 353 (627)
||||||+|++.|+++|.++++++++|.++|.++++++.+ +|++|+||++||.+|+.+|.....+.+. .+|+ +++++
T Consensus 319 YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~~~~~~~~-~~p~~~~~~~ 395 (919)
T PLN02264 319 YVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLGFQDDIFK-KFPLPKVVTT 395 (919)
T ss_pred eCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcchhhhHhh-cCChHHHHHH
Confidence 999999999999999999999999999999999998864 9999999999999999998732212343 4898 78898
Q ss_pred hhhccCccccccCCccccccccccCcCcHHHHHHHhcCCCccccccccCCCCCCCCCccccCCCCCcCcHHHHHhhcCcc
Q 006880 354 LVRNDGERFLKFPMPDVIKEDRSAWRTDEEFAREMLAGVNPVIISRLQEFPPASNLDPKVYGNQHSSITRADIERNMNEL 433 (627)
Q Consensus 354 ~~~~~~~~~lk~p~P~~~~~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~s~Ld~~~yg~~~~~it~e~i~~~L~g~ 433 (627)
+ +++++.+||||+|++|+.|+++|++|+|||||+|||+||++|+||++||++|+|||+.||+++|+||++||+..|+|+
T Consensus 396 ~-~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G~ 474 (919)
T PLN02264 396 L-QESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDGL 474 (919)
T ss_pred h-hhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCCC
Confidence 8 778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhcCceeEecCcccchhhhhcccCCCC-ccccceeEEeecCCCCeeeEEEEecCCCCCCCCCCCCCeEeeCCCCC
Q 006880 434 TIDEAIENKKLFTLDHHDALMPYLRRINSTNT-KTYASRTLLLLQNDGTLKPLAIELSLPHPQGDHHGAVSKVFTPAENG 512 (627)
Q Consensus 434 tl~~al~~grLFi~Dy~d~~lp~l~~in~~~~-~~yAp~~Lffl~~~G~L~PIAIqL~~p~~~~~~~~~~~~VftP~d~~ 512 (627)
||+|||++|||||+||||++|||+++||..++ +.|||+||||++++|+|+||||||++|++.++ ...++||||.+++
T Consensus 475 Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~--~~~~~VftP~~d~ 552 (919)
T PLN02264 475 SVQQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPN--SRSKRVVTPPVDA 552 (919)
T ss_pred cHHHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCC--cCcceeECCCCCC
Confidence 99999999999999999999999999998666 49999999999999999999999999864432 3578999997666
Q ss_pred CCCchHHHHHHHHHhcccchhhhhhhhhhccchhhHHHHHHhcCCCCccchhhhcchhhhhhhhhhHHHHHhcccCCcee
Q 006880 513 VEGSVWQLAKAYAAVNDSGYHQLVSHWLDTHAVIEPFVIATNRQLSVLHPIYKLLHPHFRDTMNINALARQILINAGGVL 592 (627)
Q Consensus 513 ~~~~~W~LAK~~v~~aD~~~HqlvsHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PH~r~Tl~IN~~AR~~LI~~gGii 592 (627)
+++|.|+||||||++||++|||+|+||++||++||||||||+||||.+|||||||.||||+||+||++||++|||+||++
T Consensus 553 ~~~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGii 632 (919)
T PLN02264 553 TSNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVI 632 (919)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccchhhHHHHHHHhhcc-cccCCCCCchhhhcC
Q 006880 593 ENTVFPAKYAMEMSAVSYKN-WVFTEQALPADLLKR 627 (627)
Q Consensus 593 d~~f~~G~~~~el~~~~yk~-w~f~~~~lP~DL~~R 627 (627)
|++|++|+++|+|++++|++ |+|++++||+||++|
T Consensus 633 d~~f~pg~~~~elss~aYk~~W~F~~~~LP~DL~~R 668 (919)
T PLN02264 633 ESCFTAGQYGMEISAAAYKNSWRFDMEGLPADLIRR 668 (919)
T ss_pred EEeeccchhHHHHHHHHHHhccCCccccCHHHHHHc
Confidence 99999999999999999996 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=5e-134 Score=1139.36 Aligned_cols=431 Identities=63% Similarity=1.055 Sum_probs=369.7
Q ss_pred ChHhHHHHHHHHHhhhcCCCCCccccCeeEeccccCCCCCCCCCCCCccccCCCCCCCCCCCcCCCCCCCCCCCCCCCcc
Q 006880 187 PEPLRKYRREELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSERR 266 (627)
Q Consensus 187 p~~L~~~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~Pd~~~~~~rpvlggs~~~pyPRR~rTgr~~~~~d~~~e~r 266 (627)
|.+|+++|++||++|||||+||||+||||||||||||||+||++++++|||||||++|||||||||||+|+++||.+|||
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCcccCCCCccCccccchhhhhhHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHhhcCCCcCCCCccchhhcccc
Q 006880 267 LPLISLDIYVPRDERFGHLKFSDFLAYALKSLVQILLPEITSLCDKTINEFDSFDDVLNLYEGGIKLPNSQTVSKIRDRI 346 (627)
Q Consensus 267 ~~~~~~~~ylPrDe~Fs~~K~~~f~~~~~~~~~~~~~p~l~~~~~~~~~~f~sf~di~~ly~~~~~~~~~~~~~~~~~~~ 346 (627)
. . .+||||||+|++.|+.+|.++++|+++|.++|.|++++..+..+|+||+||++||++|+++| .+.+.+.+
T Consensus 81 ~---~-~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~----~~~~~~~~ 152 (667)
T PF00305_consen 81 S---G-DIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLP----TDLLKKLI 152 (667)
T ss_dssp ----S-SGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE------HHHHCCHT
T ss_pred c---c-cccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccch----hhHhhhcC
Confidence 2 1 79999999999999999999999999999999999998877899999999999999999988 33566778
Q ss_pred chHHHHHhhhccCccccccCCccccccccccCcCcHHHHHHHhcCCCccccccccCCCCCCCCCccccCCCCCcCcHHHH
Q 006880 347 PWEMLKELVRNDGERFLKFPMPDVIKEDRSAWRTDEEFAREMLAGVNPVIISRLQEFPPASNLDPKVYGNQHSSITRADI 426 (627)
Q Consensus 347 p~~~~~~~~~~~~~~~lk~p~P~~~~~~~~~W~~D~eFgrQ~LaG~NP~~I~r~~~~P~~s~Ld~~~yg~~~~~it~e~i 426 (627)
|+++++++++.+++.++|||+|+|+++++++|++|+|||||+|||+||++|+||+++|++++|||++||+++|+||++||
T Consensus 153 ~~~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i 232 (667)
T PF00305_consen 153 PLELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHI 232 (667)
T ss_dssp TSTTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHH
T ss_pred cHHHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccHHHHhhcCceeEecCcccchhhhhcccCCCCccccceeEEeecCCCCeeeEEEEecCCCCCCCCCCCCCeEe
Q 006880 427 ERNMNELTIDEAIENKKLFTLDHHDALMPYLRRINSTNTKTYASRTLLLLQNDGTLKPLAIELSLPHPQGDHHGAVSKVF 506 (627)
Q Consensus 427 ~~~L~g~tl~~al~~grLFi~Dy~d~~lp~l~~in~~~~~~yAp~~Lffl~~~G~L~PIAIqL~~p~~~~~~~~~~~~Vf 506 (627)
+..|+|+||++||++|||||+||+++.+|++++||....+.|||+||||++++|+|+||||||++|++.+. +..++||
T Consensus 233 ~~~l~g~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~--~~~~~v~ 310 (667)
T PF00305_consen 233 EPQLEGLTLEEALKDGRLFILDYHDLFGPYLNKINEKGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGP--PQFNPVF 310 (667)
T ss_dssp HHHCHCS-HHHHHHTT-EEEEEEGGGTTHHHHHHTTCCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS---EEEEEE
T ss_pred hhccCCCcHHHHHhcCCeEEEeehhhccccccccccCCcEeccceeEEEEcCCCCEeeeEEeccCCCCccc--Cccceee
Confidence 99999999999999999999999999999999999966679999999999999999999999998754322 4578999
Q ss_pred eCCCCCCCCchHHHHHHHHHhcccchhhhhhhhhhccchhhHHHHHHhcCCCCccchhhhcchhhhhhhhhhHHHHHhcc
Q 006880 507 TPAENGVEGSVWQLAKAYAAVNDSGYHQLVSHWLDTHAVIEPFVIATNRQLSVLHPIYKLLHPHFRDTMNINALARQILI 586 (627)
Q Consensus 507 tP~d~~~~~~~W~LAK~~v~~aD~~~HqlvsHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PH~r~Tl~IN~~AR~~LI 586 (627)
||+++++.+|.|+|||+||++||+++||+++||++||+|||||||||+||||.+|||||||.||||+||+||++||++||
T Consensus 311 tP~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li 390 (667)
T PF00305_consen 311 TPSDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLI 390 (667)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTS
T ss_pred ecCCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhh
Confidence 99955545688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeecccchhhHHHHHHHhhcccccCCCCCchhhhcC
Q 006880 587 NAGGVLENTVFPAKYAMEMSAVSYKNWVFTEQALPADLLKR 627 (627)
Q Consensus 587 ~~gGiid~~f~~G~~~~el~~~~yk~w~f~~~~lP~DL~~R 627 (627)
++||+||++|++|+++++|++++|++|+|++++||+||++|
T Consensus 391 ~~gG~id~~~~~g~~~~~l~~~~y~~~~f~~~~lP~dL~~R 431 (667)
T PF00305_consen 391 NAGGIIDKTFSPGKYGMELSSRAYKNWRFDDQALPADLKKR 431 (667)
T ss_dssp STTSHHHHHSTTTTTHHHHHHHHHTT--GGGGSHHHHHHHT
T ss_pred ccCcccccccchhhHHHHHHHHHHhhCCcccccCHHHHHhh
Confidence 99999999999999999999999999999999999999998
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=9.2e-39 Score=298.53 Aligned_cols=136 Identities=46% Similarity=0.832 Sum_probs=126.6
Q ss_pred eEEEEEEEEecccccccccccchhhHHhhhcCCcEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEEE
Q 006880 36 KIKGTVVLMKKNVLDFNDMKASFLDRLHELLGKGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTI 115 (627)
Q Consensus 36 ~~k~~v~~~~k~~~~~~~~~~~~~d~~~~~~G~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~v 115 (627)
++||+|++|+|+.++++++. +.+|++.|++|++|+|||||++.++ .|| +||+++++.|++|..+. ++++.|++
T Consensus 2 ~vka~V~v~~k~~~~~~~~~-~~~D~~~~llGk~v~lqLVSs~~d~-~tg-~~k~~~~~~l~~~~~~~----~~e~~y~~ 74 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG-SGLDDLDDLLGRSLLLELVSSELDP-KTG-KGKKGKAAFLEGWGKSL----AGESAYEA 74 (137)
T ss_pred EEEEEEEEEEeecccccccc-chhhhHHHhhCCeEEEEEEEeeecC-CCC-CcccccceeeecccccC----CcceEEEE
Confidence 68999999999999999977 9999999999999999999998655 676 99999999999998542 45669999
Q ss_pred EeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCCCCCccceeeecC
Q 006880 116 TFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFFSN 178 (627)
Q Consensus 116 ~f~v~~dfG~pgai~v~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~riFf~n 178 (627)
+|+||++||+||||+|+|.|++||||++|+|+++|+++++||+|||||||.++++.+||||+|
T Consensus 75 ~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 75 EFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred EEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 999999999999999999999999999999999998899999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.30 E-value=1.6e-11 Score=109.17 Aligned_cols=84 Identities=43% Similarity=0.743 Sum_probs=64.0
Q ss_pred cEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEEEEeecCCCCCCceeEEeecCC-CCceeEeEEEEe
Q 006880 69 GVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHH-HSQFYLKTVTLE 147 (627)
Q Consensus 69 ~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~~-~~e~fl~~i~l~ 147 (627)
+|+|+|+++ .++. | .+....++.|. +..+....|.++ ++.++|++++|.|+|.+ ..+|||++|+|+
T Consensus 20 ~V~l~L~g~-~~~s--~----~~~~~~~~~~~----f~~g~~~~f~v~--~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~ 86 (105)
T smart00308 20 SVSLSLVGA-EGDG--K----ESKLDYLFKGI----FARGSTYEFTFD--VDEDFGELGAVKIKNEHRHPEWFLKSITVK 86 (105)
T ss_pred eEEEEEEeC-CCCC--c----ceeccccCCcc----ccCCceEEEEEe--cccCCCCcEEEEEEeCCCCCCeEEEEEEEE
Confidence 799999954 3441 1 23444555542 333555555554 79999999999999998 899999999998
Q ss_pred ecCCCceEEEEecccccC
Q 006880 148 DVPGHGRIHFVCNSWVYP 165 (627)
Q Consensus 148 ~~p~~~~i~FpCnsWV~~ 165 (627)
+.+.+..++||||+||++
T Consensus 87 ~~~~~~~~~F~c~~Wl~~ 104 (105)
T smart00308 87 DLPTGGKYHFPCNSWVYP 104 (105)
T ss_pred ECCCCCEEEEEcCceeCC
Confidence 777778999999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.15 E-value=1.5e-10 Score=103.24 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=73.0
Q ss_pred CcEEEEEEecccCCCCccccCccCcccccc-ccccccCCCCCceEEEEEEeecCCCCCCceeEEeecC---CCCceeEeE
Q 006880 68 KGVSMQLISAVNADPANELRGRLGKVAYLE-KWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQFYLKT 143 (627)
Q Consensus 68 ~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~-~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~---~~~e~fl~~ 143 (627)
.+|+|+|+ ++.+. +.+..|. .+... . +..++|.++. +.++|++.+|.|++. +.+.|||++
T Consensus 17 ~~V~i~l~-G~~g~---------s~~~~l~~~~~~~--~--g~~d~F~i~~--~~~lG~i~~i~i~~~~~~~~~~W~l~~ 80 (113)
T PF01477_consen 17 ANVYITLY-GSKGK---------SGEIELLDPSGFN--F--GSTDTFTIET--PEDLGEIQKIRIWHDGSGPSPSWYLDS 80 (113)
T ss_dssp SEEEEEEE-ETTEE---------EEEEEEEEEEETS--T--TEEEEEEEEE--SSCGCSEEEEEEEEESSSSSSEEEEEE
T ss_pred CeEEEEEE-ECCCC---------cceEEEeeeeecc--c--CceEEeeeee--cccCCCCcEEEEEEccCCCccceEEEE
Confidence 46899999 33222 2333333 33321 1 6777888774 789999999999987 899999999
Q ss_pred EEEeecCCCceEEEEecccccCCCCCccceeee
Q 006880 144 VTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFF 176 (627)
Q Consensus 144 i~l~~~p~~~~i~FpCnsWV~~~~~~~~~riFf 176 (627)
|+|...+.+..+.||||+||....+++.+|+||
T Consensus 81 V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 81 VVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred EEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 999877778899999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.00 E-value=2.8e-09 Score=96.26 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=72.0
Q ss_pred CCcEEEEEEecccCCCCccccCccCcccccc-ccccccCCCCCceEEEEEEeecCCCCCCceeEEeecCCCC---ceeEe
Q 006880 67 GKGVSMQLISAVNADPANELRGRLGKVAYLE-KWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHHHS---QFYLK 142 (627)
Q Consensus 67 G~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~-~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~~~~---e~fl~ 142 (627)
..+|+|+|+. +.++ +....|. .+.. +..+.+.+|.|+ .+.++|++.+|.|++.+.. +|||+
T Consensus 18 ~~~v~i~l~g-~~g~---------s~~~~l~~~~~~---f~~g~~~~f~v~--~~~~lG~i~~v~l~~d~~g~~~~W~l~ 82 (116)
T cd00113 18 DSNISLALYG-ENGN---------SSDIPILDGPGS---FERGSTDTFQID--LKLDIGDITKVYLRRDGSGLSDGWYCE 82 (116)
T ss_pred cCEEEEEEEe-CCCC---------cccEEccCCCCc---ccCCCceEEEEe--ccCCCcCeEEEEEEECCCCCCCCEEEe
Confidence 3579999993 3333 2334443 2322 345777788776 5789999999999987654 99999
Q ss_pred EEEEeecCCCceEEEEecccccCCCCCccceeee
Q 006880 143 TVTLEDVPGHGRIHFVCNSWVYPTHRYKYDRVFF 176 (627)
Q Consensus 143 ~i~l~~~p~~~~i~FpCnsWV~~~~~~~~~riFf 176 (627)
+|+|.....+..++|+||+||.....++..|+|.
T Consensus 83 ~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~~ 116 (116)
T cd00113 83 SITVQALGTKKVYTFPVNRWVLGGKWYTSVRSLK 116 (116)
T ss_pred EEEEEeCCCCCEEEEEeCCCcccCCCCCceeecC
Confidence 9999877767899999999999988888888863
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.94 E-value=3.6e-09 Score=96.24 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=63.6
Q ss_pred CcEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEEEEeecCCCCCCceeEEeecC-CCCceeEeEEEE
Q 006880 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH-HHSQFYLKTVTL 146 (627)
Q Consensus 68 ~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~-~~~e~fl~~i~l 146 (627)
.+|+|+|| ++.++ |.+..|++ + +..|.+++|.|+ ++++|+.-.|.|.|. ..+.|||++|+|
T Consensus 19 ~~V~i~L~-G~~g~---------S~~~~L~~---~--F~~G~~d~F~v~---~~dLG~l~~i~l~n~g~~~~Wf~~~V~V 80 (109)
T cd02899 19 GTIEITLL-GSSGR---------SNPKTLSQ---G--FYPGSLKRIRFR---AADVGDINAIILSNTALNDPWYCDYVRI 80 (109)
T ss_pred ceEEEEEE-ECCCC---------cCCEEccC---c--cCCCceEEEEEC---ccccCceEEEEEECCCCCCCceeeEEEE
Confidence 46999999 55544 33445543 2 455889999887 899999999999886 477899999999
Q ss_pred eecCCCceEEEEecccccCC
Q 006880 147 EDVPGHGRIHFVCNSWVYPT 166 (627)
Q Consensus 147 ~~~p~~~~i~FpCnsWV~~~ 166 (627)
+. |++..++||||+|+..-
T Consensus 81 ~~-~~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 81 KS-EDGKVFAFNVKRWIGYP 99 (109)
T ss_pred EC-CCCCEEEEEcceeeCCc
Confidence 85 87788999999999753
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=98.76 E-value=3.7e-08 Score=89.93 Aligned_cols=86 Identities=14% Similarity=0.263 Sum_probs=66.3
Q ss_pred CcEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEEEEeecCCCCCCceeEEeecC---CCCceeEeEE
Q 006880 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQFYLKTV 144 (627)
Q Consensus 68 ~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~---~~~e~fl~~i 144 (627)
.+|+|+|+ ++.++ |.+..|++...+ +..|.++.|.|+ .+.++|++-.|.|++. ....|||+.|
T Consensus 19 a~V~i~l~-G~~g~---------S~~~~L~~~~~~--FerG~~d~F~v~--~~~~lG~l~~i~i~~d~~g~~~~W~l~~V 84 (113)
T cd01753 19 DYIYLTLV-GTAGE---------SEKQLLDRPGYD--FERGAVDEYKVK--VPEDLGELLLVRLRKRKYLLFDAWFCNYI 84 (113)
T ss_pred cEEEEEEE-ECCCc---------ccCEEcCCCCCc--cCCCCeeEEEEe--cccCCCCcEEEEEEECCCCCCCCeeecEE
Confidence 46999999 55444 445566654333 455889999888 5889999999999865 4789999999
Q ss_pred EEeecCCCceEEEEecccccCCCC
Q 006880 145 TLEDVPGHGRIHFVCNSWVYPTHR 168 (627)
Q Consensus 145 ~l~~~p~~~~i~FpCnsWV~~~~~ 168 (627)
+|++ +.+..++||||+|+.+...
T Consensus 85 ~V~~-~~~~~~~F~c~rWl~~~~~ 107 (113)
T cd01753 85 TVTG-PGGDEYHFPCYRWIEGYGT 107 (113)
T ss_pred EEEc-CCCCEEEEEhHHeECCCCE
Confidence 9985 4467899999999987654
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.63 E-value=2.8e-07 Score=84.60 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=70.8
Q ss_pred CcEEEEEEecccCCCCccccCccCcccccccc--ccccCCCCCceEEEEEEeecCCCCCCceeEEeecCC---CCceeEe
Q 006880 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKW--ITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNHH---HSQFYLK 142 (627)
Q Consensus 68 ~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w--~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~~---~~e~fl~ 142 (627)
.+|+|+|+ ++.++ |....|+++ ... +..|+.++|.++. .++|++-.|.|++.. ...|||+
T Consensus 19 a~V~i~L~-G~~g~---------s~~~~L~~~~~~~~--FerGs~d~F~i~~---~~lG~l~~i~i~~d~~g~~~~W~~~ 83 (120)
T cd01756 19 ANVFITLY-GENGD---------TGKRKLKKSNNKNK--FERGQTDKFTVEA---VDLGKLKKIRIGHDNSGLGAGWFLD 83 (120)
T ss_pred cEEEEEEE-eCCCc---------cccEEccCCCcCCc--ccCCCeEEEEEEe---cCCCCeEEEEEEECCCCCCCCcEEe
Confidence 56999999 45433 456667764 333 4568899999884 799999999998753 5799999
Q ss_pred EEEEeecCCCceEEEEecccccCCCCC-ccceeee
Q 006880 143 TVTLEDVPGHGRIHFVCNSWVYPTHRY-KYDRVFF 176 (627)
Q Consensus 143 ~i~l~~~p~~~~i~FpCnsWV~~~~~~-~~~riFf 176 (627)
.|+|.....+..++||||+|+...+.. ...|+|.
T Consensus 84 ~V~V~~~~~~~~~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 84 KVEIREPGTGDEYTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred EEEEEECCCceEEEEEeCCccCCCCCCCEEEEEEE
Confidence 999986665788999999999876542 3456654
No 12
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=98.47 E-value=1.2e-06 Score=80.60 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=68.4
Q ss_pred CcEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEEEEeecCCCCCCceeEEeecC---CCCceeEeEE
Q 006880 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQFYLKTV 144 (627)
Q Consensus 68 ~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~---~~~e~fl~~i 144 (627)
-+|+|+|+ ++.++ |.+..|.+... ..+..|.+.+|.+. .+.++|++-.|.|... ....|||++|
T Consensus 19 a~V~i~L~-G~~g~---------s~~~~L~~~~~-~~F~rG~~~~f~i~--~~~dlG~l~~i~l~hd~~g~~~~W~l~~V 85 (120)
T cd01752 19 AKVTITLY-GAEGE---------SEPHHLRDPEK-PIFERGSVDSFLLT--TPFPLGELQSIRLWHDNSGLSPSWYLSRV 85 (120)
T ss_pred cEEEEEEE-eCCCC---------cccEEcCCCCc-cceeCCCeeEEEec--CccCCCCccEEEEEECCCCCCCCeEEEEE
Confidence 46999999 55444 34455654321 12445888888887 4789999999999754 4779999999
Q ss_pred EEeecCCCceEEEEecccccCCCC-Cccceee
Q 006880 145 TLEDVPGHGRIHFVCNSWVYPTHR-YKYDRVF 175 (627)
Q Consensus 145 ~l~~~p~~~~i~FpCnsWV~~~~~-~~~~riF 175 (627)
+|.....+..+.||||+|+...+. -...|+|
T Consensus 86 ~V~~~~t~~~~~F~~~rWl~~~~~d~~~~r~~ 117 (120)
T cd01752 86 IVRDLQTGKKWFFLCNDWLSVEEGDGTVERTF 117 (120)
T ss_pred EEEECCCCcEEEEEeCcEECCcCCCCEEEEEE
Confidence 998655567899999999987644 3345554
No 13
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=98.38 E-value=1.5e-06 Score=81.40 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=63.2
Q ss_pred CcEEEEEEecccCCCCccccCccCccccc-cccc-----cccCCCCCceEEEEEEeecCCCCCCceeEEeecC---CCCc
Q 006880 68 KGVSMQLISAVNADPANELRGRLGKVAYL-EKWI-----TTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQ 138 (627)
Q Consensus 68 ~~v~lqLVS~~~~d~~tg~~gk~s~~~~l-~~w~-----~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~---~~~e 138 (627)
.+|+|+|+ ++.++ |.+..+ ++|. ....+..|.++.|.|+ .+.++|++-.|.|+.. ....
T Consensus 19 anV~i~l~-G~~G~---------s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~--~~~~lG~l~~irI~HDn~G~~p~ 86 (129)
T cd01754 19 SRISLQIY-DADGP---------GLRIANLEAWGGLMGAGHDYFERGNLDRFSGR--GPCLPSPPCWMNLTSDGTGNHPG 86 (129)
T ss_pred ceEEEEEE-eCCCC---------cccEEcccccccccccccccccCCCccEEEEE--eccCCCCeEEEEEEECCCCCCCC
Confidence 46999999 55444 222333 2221 1112556889999998 4888999999999864 4789
Q ss_pred eeEeEEEEeecCC---CceEEEEecccccCCCC
Q 006880 139 FYLKTVTLEDVPG---HGRIHFVCNSWVYPTHR 168 (627)
Q Consensus 139 ~fl~~i~l~~~p~---~~~i~FpCnsWV~~~~~ 168 (627)
|||.+|+|++... +..++||||+|+...+.
T Consensus 87 W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 87 WYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred cccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 9999999986543 24799999999976554
No 14
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=98.36 E-value=2.5e-06 Score=78.31 Aligned_cols=78 Identities=10% Similarity=0.102 Sum_probs=57.9
Q ss_pred CcEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEEEEeecCCCCCCceeEEeecC---CCCceeEeEE
Q 006880 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRNH---HHSQFYLKTV 144 (627)
Q Consensus 68 ~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n~---~~~e~fl~~i 144 (627)
.+|+|+|+ ++.++ |.+..|+.. ...|.++ +.++|+.-.|.|+.. ....|||+.|
T Consensus 20 anV~i~L~-G~~g~---------s~~~~L~~~----------~f~~~v~---~~~LG~L~~irIwHDnsG~~~~Wfl~~V 76 (114)
T cd01757 20 ANPWICVS-GELGE---------TPPLQIPKN----------SLEMTFD---CQNLGKLTTVQIGHDNSGLLAKWLVEYV 76 (114)
T ss_pred ceEEEEEE-EcCCC---------cCCEEecCC----------ceEEEEe---cCCcCCcEEEEEEECCCCCCCCeeeeEE
Confidence 46999999 66554 344555421 1134443 499999999999864 4789999999
Q ss_pred EEeecCCCceEEEEecccccCCCC
Q 006880 145 TLEDVPGHGRIHFVCNSWVYPTHR 168 (627)
Q Consensus 145 ~l~~~p~~~~i~FpCnsWV~~~~~ 168 (627)
.|++.+.+..++||||+|+...+.
T Consensus 77 ~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 77 MVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred EEEeCCCCCEEEEecCceecCCCC
Confidence 999878888899999999986543
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=80.51 E-value=15 Score=33.99 Aligned_cols=77 Identities=6% Similarity=0.016 Sum_probs=50.0
Q ss_pred CcEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEEEEeecCCCCCCceeEEeec--CC--------CC
Q 006880 68 KGVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFIIRN--HH--------HS 137 (627)
Q Consensus 68 ~~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v~n--~~--------~~ 137 (627)
-.|.+.|. ++.++ |....|.. .. ...+.+.+|-+. .+.++|..-.|.++- .- ..
T Consensus 19 ~~v~v~L~-G~~g~---------s~~~~l~~--~~--~~~g~~~sfli~--t~~~lG~l~~v~~~~dn~~~~~~~~~~~p 82 (120)
T cd01755 19 GTFTVSLY-GTKGE---------TEQLPIVL--GE--LKPNKTYSFLID--TEVDIGDLLKVKFKWENNVINSNSGETLP 82 (120)
T ss_pred ccEEEEEE-cCCCC---------cccEEEeC--Cc--ccCCCEEEEEEE--cCCCccceEEEEEEEcCCCcccccccCCC
Confidence 36788888 55544 23344431 11 234666667666 699999998888762 21 46
Q ss_pred ceeEeEEEEeecCCCceEEEEecc
Q 006880 138 QFYLKTVTLEDVPGHGRIHFVCNS 161 (627)
Q Consensus 138 e~fl~~i~l~~~p~~~~i~FpCns 161 (627)
.||++.|+|+....+. ...-|.+
T Consensus 83 ~~~~~~I~Vq~get~~-~~~FC~~ 105 (120)
T cd01755 83 KLGARKIRVKSGETQK-KFTFCSQ 105 (120)
T ss_pred cEEEEEEEEEECCCCC-EEEEECC
Confidence 8999999998776644 4456766
No 16
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=32.89 E-value=3.8e+02 Score=25.59 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=45.7
Q ss_pred cEEEEEEecccCCCCccccCccCccccccccccccCCCCCceEEEEEEeecCCCCCCceeEEe-ecCC------------
Q 006880 69 GVSMQLISAVNADPANELRGRLGKVAYLEKWITTITPLTAVETLFTITFDWDEAMGVPGAFII-RNHH------------ 135 (627)
Q Consensus 69 ~v~lqLVS~~~~d~~tg~~gk~s~~~~l~~w~~~~~~~~~~~~~y~v~f~v~~dfG~pgai~v-~n~~------------ 135 (627)
.|.+.|. ++.++ |+...|.. ... ...+.+.+|-|+ .+.++|+.-.|.+ ++..
T Consensus 21 ~v~i~L~-G~~g~---------S~~~~l~~--~~~-~~~G~t~sfLi~--t~~dlG~L~~vk~~W~~n~~~~~sW~~~~~ 85 (137)
T cd01758 21 TFTISLY-GTLGE---------SENLPLTL--PEG-ITGNKTNSFLIT--TEKDIGDLLMLKLKWEGSSLWSNSWWTVQT 85 (137)
T ss_pred eEEEEEE-cCCCc---------ccCEEEec--Ccc-cCCCCeEEEEEE--CCCCcCCEEEEEEEEeCCCCCChhhhcccc
Confidence 5788888 55444 33344431 110 123666666665 6899999988888 4321
Q ss_pred ---------CCceeEeEEEEeecCCCceEEEEecc
Q 006880 136 ---------HSQFYLKTVTLEDVPGHGRIHFVCNS 161 (627)
Q Consensus 136 ---------~~e~fl~~i~l~~~p~~~~i~FpCns 161 (627)
....+++.|+|+...++. ..--|.+
T Consensus 86 ~~~~~~~~~~p~l~~~~I~Vk~GEtq~-~~~FC~~ 119 (137)
T cd01758 86 IIPWSGWWRGSGLTIRKIRVKAGETQK-KMTFCAE 119 (137)
T ss_pred ccccccccCCCeEEEEEEEEEeCCCcc-EEEECCC
Confidence 245568999997444434 4445766
No 17
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=25.18 E-value=41 Score=33.16 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=35.9
Q ss_pred eccCCCChHhHHHHHHHHHhhhcCCCCCccccCeeEeccccCCCCCCCCCCCCccccCCCCCCCCCCCcCC-CCCC
Q 006880 181 YLPCQTPEPLRKYRREELVNLRGNGKGELKEWDRVYDYAFYNDLGNPDKGPEYARPVLGGSQEYPYPRRGR-TGRK 255 (627)
Q Consensus 181 yLP~~tp~~L~~~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~Pd~~~~~~rpvlggs~~~pyPRR~r-Tgr~ 255 (627)
|+--+.++...|..--+|++-- ..=|++|.|||+.-|.+ +.|.-||-+ ||||- -|++
T Consensus 84 ~~~v~~~a~~vK~~~i~iEe~h--------plGRL~DiDV~~~~g~~-----iSR~~lg~~-----~R~CliC~~~ 141 (170)
T PF03802_consen 84 FLVVDGDAEEVKRIMIEIEESH--------PLGRLFDIDVLDPDGKQ-----ISREDLGLP-----PRRCLICGRP 141 (170)
T ss_pred eEEeCCCHHHHHHHHHHHHccC--------cchheEEEeeecCCCCc-----cCHHHcCCC-----CCcccCCChh
Confidence 3333344555566666666544 23489999999654554 457777775 89987 4443
No 18
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=24.94 E-value=31 Score=41.76 Aligned_cols=48 Identities=17% Similarity=0.375 Sum_probs=34.0
Q ss_pred CCCCCceeEEeecC---CCCceeEeEEEEeecCCCceEEEEecccccCCCC
Q 006880 121 EAMGVPGAFIIRNH---HHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPTHR 168 (627)
Q Consensus 121 ~dfG~pgai~v~n~---~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~~~ 168 (627)
.++|..--+.|-.. ....||++.|.|..-=.|.++-|||++|.-+..+
T Consensus 1020 kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ged 1070 (1295)
T KOG2080|consen 1020 KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGED 1070 (1295)
T ss_pred cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCccc
Confidence 78887776666432 3557999998774322357999999999866543
No 19
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=23.90 E-value=2.2e+02 Score=27.00 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=38.9
Q ss_pred CceEEEEEEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEEecccccCC
Q 006880 108 AVETLFTITFDWDEAMGVPGAFIIRNHHHSQFYLKTVTLEDVPGHGRIHFVCNSWVYPT 166 (627)
Q Consensus 108 ~~~~~y~v~f~v~~dfG~pgai~v~n~~~~e~fl~~i~l~~~p~~~~i~FpCnsWV~~~ 166 (627)
...+.|+|. -+- ++.+=-+.+...-.+.|+.++|+|.+ ....++.|..|.||...
T Consensus 63 Cs~DtF~v~--G~C-~~~IC~lyL~r~G~dGW~Pe~V~Iy~-~~~~~~~F~~~~~lp~~ 117 (125)
T PF06232_consen 63 CSTDTFQVT--GPC-LYQICYLYLYRSGSDGWKPEWVQIYG-SGSKPVTFYFNTFLPNG 117 (125)
T ss_pred CCcceeEee--ccc-CCcccEEEEEEccCCCCEeCeEEEEE-cCCCCeEEECCCcCCCC
Confidence 456788876 232 33444555555556899999999975 34578999999999764
Done!