Your job contains 1 sequence.
>006881
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS
CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK
DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLLCQGRRIF
VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWP
SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW
KGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAK
QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKT
IENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDD
NNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD
EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC
ARAEGPASNPEANCGYFKWAFSKSKQK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006881
(627 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 1498 1.3e-153 1
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 450 2.6e-71 4
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 436 5.4e-68 4
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 436 5.4e-68 4
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 401 1.2e-65 3
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 428 7.0e-65 3
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 344 2.4e-50 3
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 342 1.0e-47 3
RGD|1565983 - symbol:Apex2 "APEX nuclease (apurinic/apyri... 334 7.9e-46 3
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 314 9.8e-46 4
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 313 1.3e-45 4
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 330 5.3e-37 2
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 242 1.9e-34 4
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 224 2.0e-31 4
SGD|S000000115 - symbol:APN2 "Class II abasic (AP) endonu... 218 2.6e-24 4
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 140 8.6e-14 2
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 137 1.3e-13 3
GENEDB_PFALCIPARUM|PF14_0285 - symbol:PF14_0285 "exodeoxy... 120 9.1e-13 3
UNIPROTKB|Q8ILF8 - symbol:PF14_0285 "Exodeoxyribonuclease... 120 9.1e-13 3
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 143 2.7e-12 3
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 134 9.6e-12 2
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 120 1.5e-11 2
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 144 2.2e-11 2
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 131 1.5e-10 2
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 124 1.8e-10 3
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 130 2.5e-10 2
UNIPROTKB|Q9KQY7 - symbol:VC1860 "Exodeoxyribonuclease II... 113 4.8e-10 2
TIGR_CMR|VC_1860 - symbol:VC_1860 "exodeoxyribonuclease I... 113 4.8e-10 2
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 129 5.4e-10 2
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 127 5.6e-10 2
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 126 7.3e-10 2
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 126 7.4e-10 2
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 126 7.4e-10 2
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 126 7.4e-10 2
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 125 9.5e-10 2
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 125 1.2e-09 2
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 125 3.9e-09 2
TIGR_CMR|SO_3037 - symbol:SO_3037 "exodeoxyribonuclease I... 107 2.1e-08 2
UNIPROTKB|K7GNL1 - symbol:LOC100519003 "Uncharacterized p... 137 3.0e-08 1
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 103 7.3e-08 2
CGD|CAL0001657 - symbol:APN2 species:5476 "Candida albica... 120 2.4e-07 3
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 126 4.0e-07 2
TIGR_CMR|GSU_1539 - symbol:GSU_1539 "exodeoxyribonuclease... 99 1.1e-06 2
TIGR_CMR|APH_0505 - symbol:APH_0505 "exodeoxyribonuclease... 111 2.2e-06 2
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 90 5.3e-06 2
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 130 2.1e-05 2
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 123 7.0e-05 2
UNIPROTKB|E1C286 - symbol:E1C286 "Uncharacterized protein... 110 0.00011 3
TIGR_CMR|SPO_2509 - symbol:SPO_2509 "exodeoxyribonuclease... 86 0.00013 2
UNIPROTKB|F1N383 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00025 1
UNIPROTKB|Q3MHN7 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00025 1
RGD|1310562 - symbol:Neil3 "nei endonuclease VIII-like 3 ... 127 0.00031 2
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 90 0.00032 2
ZFIN|ZDB-GENE-041114-18 - symbol:neil3 "nei endonuclease ... 123 0.00039 1
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 307/521 (58%), Positives = 376/521 (72%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--GSK-----IME 113
CTRTS+KGRTGYSGVATFCRVKS SS E ALPV AEEG TGL+ ++ G K + E
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---HKRWE 170
GLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ +RWE
Sbjct: 121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180
Query: 171 FLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 230
LL QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHP
Sbjct: 181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240
Query: 231 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 290
ER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YK
Sbjct: 241 ERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 300
Query: 291 RWKPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 349
R+K N P RWKGG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct: 301 RFKNENMPTRWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 360
Query: 350 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 409
VSV KR ++ K+ + S S +SN++ D S L N GI CS
Sbjct: 361 VSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFE 417
Query: 410 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSF 469
N+ + G T+ E + ++ + S + SS D RKKA+K Q QLSLKSF
Sbjct: 418 NKSTSG-VTEA-ETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSF 475
Query: 470 FHKRSNVSH--DDNNSITDTSLNVN-NSVTDTSLSQEEVPE 507
F S V++ D ++S +S + S+T+ ++S +E E
Sbjct: 476 FTTNSKVNNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSE 516
Score = 264 (98.0 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 74/213 (34%), Positives = 107/213 (50%)
Query: 404 VYCSSSNQESE----GEF-TKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 458
V CSSS Q + G+ T + NC S ++ + S + S V A A
Sbjct: 378 VSCSSSTQSNTSSICGDISTGPLRNC-GSMGISLEKSC---SFENKSTSGVTEAETVAAT 433
Query: 459 SQLGQLS--LKSFFHKRSNVSHDDNNS----ITDTSLNVNNSVTDTSLSQEEVPESHHHS 512
+ LS +++ + N+S D + I + L++ + T S S +
Sbjct: 434 GSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKVNNVEDSSSSYV 493
Query: 513 NKIPVTDY-SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 571
+ P + S + + G S + E+ K++N+ AL+EW+RIQ LM+ SI
Sbjct: 494 SSSPSSQVESITEPNVSGKEDSEPTTSTQEQDQTGSSAKQKNDAALMEWQRIQNLMQNSI 553
Query: 572 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 604
PLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 554 PLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 586
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 450 (163.5 bits), Expect = 2.6e-71, Sum P(4) = 2.6e-71
Identities = 108/290 (37%), Positives = 160/290 (55%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R+ R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNSYFSFSRS----RSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H G L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFH---KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLV 215
K++F+ R E LL G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 216 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 258
G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL 279
Score = 191 (72.3 bits), Expect = 2.6e-71, Sum P(4) = 2.6e-71
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 541 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 600
E+K K K+ W+ + + +PLC GH+EPCV R VKK GP FGR+F++C
Sbjct: 435 EEKNKVPESKDEKGERTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMC 493
Query: 601 ARAEGPASNPEANCGYFKWA 620
AR GP S+P + C +F W+
Sbjct: 494 ARPRGPPSDPSSRCNFFLWS 513
Score = 75 (31.5 bits), Expect = 2.6e-71, Sum P(4) = 2.6e-71
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 310 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 357
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 45 (20.9 bits), Expect = 2.6e-71, Sum P(4) = 2.6e-71
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 448 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 507
H R RK + Q +L S+F S++S + + +L + +T T + EEV
Sbjct: 374 HSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQ--TSGVELPTLPLVGPLT-TPKTAEEVAT 430
Query: 508 SH--HHSNKIP 516
+ NK+P
Sbjct: 431 ATVLEEKNKVP 441
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 436 (158.5 bits), Expect = 5.4e-68, Sum P(4) = 5.4e-68
Identities = 110/291 (37%), Positives = 161/291 (55%)
Query: 1 MKIVTYNVNGLRQ-----RVSQFGS-----LRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R R + S + ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 214
FK++F+ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 215 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 258
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 188 (71.2 bits), Expect = 5.4e-68, Sum P(4) = 5.4e-68
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 571 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 620
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 68 (29.0 bits), Expect = 5.4e-68, Sum P(4) = 5.4e-68
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 310 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 369
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 370 SLPAESNST 378
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 5.4e-68, Sum P(4) = 5.4e-68
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 451 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 481
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 436 (158.5 bits), Expect = 5.4e-68, Sum P(4) = 5.4e-68
Identities = 110/291 (37%), Positives = 161/291 (55%)
Query: 1 MKIVTYNVNGLRQ-----RVSQFGS-----LRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R R + S + ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 214
FK++F+ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 215 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 258
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 188 (71.2 bits), Expect = 5.4e-68, Sum P(4) = 5.4e-68
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 571 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 620
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 68 (29.0 bits), Expect = 5.4e-68, Sum P(4) = 5.4e-68
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 310 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 369
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 370 SLPAESNST 378
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 5.4e-68, Sum P(4) = 5.4e-68
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 451 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 481
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 401 (146.2 bits), Expect = 1.2e-65, Sum P(3) = 1.2e-65
Identities = 100/233 (42%), Positives = 134/233 (57%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + ++K+LDSFDADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIRTFKN---GIKKILDSFDADIICVQETKVTRDLLDEKTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-MEGLE-DF 118
+R GR+GYSGVAT+C+ + A P AEEG TGLL G+ I G + +
Sbjct: 58 FSR----GRSGYSGVATYCK--------DAATPFLAEEGLTGLLSNQGAVIGCYGDQVEL 105
Query: 119 SKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHK-- 167
+ +ELL +D+EGR VIT H HFI + NVY PRAD + R +FKLQF+
Sbjct: 106 TSEELLALDNEGRAVITQH-HFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQFYRLLQ 164
Query: 168 -RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVES 217
R E +L G + ++GD+N + ID CD +F N R W L E+
Sbjct: 165 CRAEAILSSGSHVIILGDVNTSHRPIDHCDPDDVDNFEDNPGRKWLDQFLFET 217
Score = 195 (73.7 bits), Expect = 1.2e-65, Sum P(3) = 1.2e-65
Identities = 34/54 (62%), Positives = 38/54 (70%)
Query: 572 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 625
PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W K K
Sbjct: 506 PLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAWV-EKGK 558
Score = 146 (56.5 bits), Expect = 1.2e-65, Sum P(3) = 1.2e-65
Identities = 39/109 (35%), Positives = 53/109 (48%)
Query: 217 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 276
SGG F D FR HP+R A+TCW + TGA Q NYGTRID+I +H+ V
Sbjct: 239 SGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYIF------------SNHSLV 286
Query: 277 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE 325
DI+ + + + P W +S L+ S P +C +PE
Sbjct: 287 KTFFIGVDIMPEVEG--SDHCPVW-AQLSCTLQSSPRCPP-VCTRHMPE 331
Score = 75 (31.5 bits), Expect = 3.3e-58, Sum P(3) = 3.3e-58
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 308 LEGSDHAPVYMCLG-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCK 366
+EGSDH PV+ L + P+ P + +R++P G QQ L L K KQ S
Sbjct: 299 VEGSDHCPVWAQLSCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLFKIP-EKQNISNS 355
Query: 367 FSGSLPAESNSTGDTED 383
SLP S G+ +
Sbjct: 356 SEKSLPG-SQDAGEIRE 371
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 428 (155.7 bits), Expect = 7.0e-65, Sum P(3) = 7.0e-65
Identities = 108/291 (37%), Positives = 158/291 (54%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R Q S ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 214
FK++F+ R E LL G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 215 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 258
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL 280
Score = 190 (71.9 bits), Expect = 7.0e-65, Sum P(3) = 7.0e-65
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 572 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 620
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
Score = 77 (32.2 bits), Expect = 7.0e-65, Sum P(3) = 7.0e-65
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 310 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 357
GSDH PV L V +P P L +R+LP G Q ++ L+ E
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 344 (126.2 bits), Expect = 2.4e-50, Sum P(3) = 2.4e-50
Identities = 90/240 (37%), Positives = 133/240 (55%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGS 109
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T +G
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATLNGD 109
Query: 110 KIMEG-LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
G +++F+++EL +DSEGR ++T H G + NVY P AD R+
Sbjct: 110 VNCYGNMDEFTQEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 214
FK++F+H R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Score = 339 (124.4 bits), Expect = 1.3e-49, Sum P(3) = 1.3e-49
Identities = 89/251 (35%), Positives = 126/251 (50%)
Query: 23 KLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVK 82
++LD DADI+C QETK+ R L L + +GY S+FS +R R+GYSGVATFC+
Sbjct: 34 RILDKLDADIVCLQETKVTRDVLTEPLAIIEGYNSYFSFSRN----RSGYSGVATFCKDS 89
Query: 83 SPFSSTEVALP--VAAEEGFTGLLETSGSKIMEGLEDF-SKDELLKIDSEGRCVITDHGH 139
+ + E L +A G E L S+ L + R D
Sbjct: 90 ATPVAAEEGLSGLLATLNGDVNCYGNMDEFTQEELRALDSEGRALLTQHKIRTQDGDEKS 149
Query: 140 FILFNVYGPRADSEDTVRIQFKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCD 196
+ NVY P AD R+ FK++F+H R E LL G + ++GDLN A ID D
Sbjct: 150 LTVINVYCPHADPGKPERLTFKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWD 209
Query: 197 AG--PDFAKNEFRIWFRSML----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQ 247
A F ++ R W +L ++G G F D +R P+++ A+TCW + TGA
Sbjct: 210 AVNLECFEEDPGRKWMDGLLSNLRCQAGSHMGPFIDSYRYFQPKQKGAFTCWSTVTGARH 269
Query: 248 FNYGTRIDHIL 258
NYG+RID++L
Sbjct: 270 LNYGSRIDYVL 280
Score = 195 (73.7 bits), Expect = 2.4e-50, Sum P(3) = 2.4e-50
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 550 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 609
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 610 PEANCGYFKWA 620
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
Score = 80 (33.2 bits), Expect = 2.4e-50, Sum P(3) = 2.4e-50
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 310 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 357
GSDH PV L P +P P L +R+LP G Q ++ L++ E
Sbjct: 301 GSDHCPVGAVLNVSP-VPAKQCPPLCTRFLPEFAGTQLKILRFLVRLE 347
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 342 (125.4 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 90/256 (35%), Positives = 131/256 (51%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+LR +L DADI+C QETK+ R L L + +GY S+FS +R+ R+GYSGVATFC
Sbjct: 30 ALRHILRELDADIVCLQETKVSRDALTEPLAVVEGYNSYFSFSRS----RSGYSGVATFC 85
Query: 80 RVK-SPFSSTE-VALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH 137
+ +P ++ E ++ A G G E L + + C T
Sbjct: 86 KDSVTPVAAEEGLSGQFATLSGHVGCYGNMNEFTQEQLRALDSEGRALLTQHKIC--TQE 143
Query: 138 GH---FILFNVYGPRADSEDTVRIQFKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAA 191
G L NVY P A + R+ FK++F+ R E LL G + ++GD+N A
Sbjct: 144 GKEKPLTLINVYCPHASPGNHERLTFKMRFYRLLQIRAEALLAAGSHVIILGDINTAHHP 203
Query: 192 IDRCDAG--PDFAKNEFRIWFRSML--VE--SG---GSFFDVFRSKHPERREAYTCWPSN 242
ID C+AG F ++ R W +L +E +G G F D +R +P++ A+TCW
Sbjct: 204 IDHCNAGNLECFEEDLGRRWMDGLLSNLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMI 263
Query: 243 TGAEQFNYGTRIDHIL 258
+GA NYGTR+D+IL
Sbjct: 264 SGARSLNYGTRLDYIL 279
Score = 331 (121.6 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 87/239 (36%), Positives = 131/239 (54%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + G +LR +L DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSK 110
+GY S+FS +R+ R+GYSGVATFC+ + PVAAEEG +G T SG
Sbjct: 62 VEGYNSYFSFSRS----RSGYSGVATFCK--------DSVTPVAAEEGLSGQFATLSGHV 109
Query: 111 IMEG-LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQF 160
G + +F++++L +DSEGR ++T H G L NVY P A + R+ F
Sbjct: 110 GCYGNMNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTF 169
Query: 161 KLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 214
K++F+ R E LL G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLL 228
Score = 178 (67.7 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 571 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 620
+PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 464 MPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
Score = 75 (31.5 bits), Expect = 1.0e-47, Sum P(3) = 1.0e-47
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 310 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 357
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILGFLVPCE 346
>RGD|1565983 [details] [associations]
symbol:Apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease)
2" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743
"mitochondrial inner membrane" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
RGD:1565983 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 OrthoDB:EOG4NS3BQ IPI:IPI00949933
Ensembl:ENSRNOT00000066573 ArrayExpress:D4A344 Uniprot:D4A344
Length = 521
Score = 334 (122.6 bits), Expect = 7.9e-46, Sum P(3) = 7.9e-46
Identities = 91/251 (36%), Positives = 129/251 (51%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLAGQEPSNSPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
+GY S+FS +R+ R+GYS GVATFC+ + A PVAAEEG +G+
Sbjct: 62 VEGYNSYFSFSRS----RSGYSECPCLSPGVATFCK--------DSATPVAAEEGLSGVF 109
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSE 153
T I ++F+++EL +DSEGR +T H G L NVY P AD
Sbjct: 110 ATLNGDIGCYGNTDEFTQEELRVLDSEGRAFLTQHKIRTLEGKEKTLTLINVYCPHADPG 169
Query: 154 DTVRIQFKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRI 208
R+ FK++F+ R E LL G + ++GDLN A ID CDA F N R
Sbjct: 170 KPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFQSNPLRE 229
Query: 209 WFRSMLVESGG 219
W + GG
Sbjct: 230 WLDYSRMNPGG 240
Score = 190 (71.9 bits), Expect = 7.9e-46, Sum P(3) = 7.9e-46
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 550 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 609
K+ V W+ + + +PLC GH+EPCV R VKK GP FGR F++CAR GP S+
Sbjct: 449 KDEKEVRTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSD 507
Query: 610 PEANCGYFKWA 620
P + C +F W+
Sbjct: 508 PSSRCNFFLWS 518
Score = 155 (59.6 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 58/199 (29%), Positives = 82/199 (41%)
Query: 74 GVATFCRVKS-PFSSTEVALPVAAE-EGFTGLLETSGSKIMEGLEDF-SKDELLKIDSEG 130
GVATFC+ + P ++ E V A G G + E L S+ +
Sbjct: 87 GVATFCKDSATPVAAEEGLSGVFATLNGDIGCYGNTDEFTQEELRVLDSEGRAFLTQHKI 146
Query: 131 RCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHK---RWEFLLCQGRRIFVVGDLNI 187
R + L NVY P AD R+ FK++F+ R E LL G + ++GDLN
Sbjct: 147 RTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNT 206
Query: 188 APAAIDRCDAGP--DFAKNEFRIWFRSMLVESGG-----SFFDVFRSK-HPERREAYTCW 239
A ID CDA F N R W + GG S F V+ HP ++ + W
Sbjct: 207 AHRPIDHCDASSLECFQSNPLREWLDYSRMNPGGEQAPVSLFCVYYIYLHPHQQWVWEEW 266
Query: 240 PSNTGAEQFNYGTRIDHIL 258
+ + Y ID++L
Sbjct: 267 TPLSSSYHVCYIVSIDYVL 285
Score = 57 (25.1 bits), Expect = 7.9e-46, Sum P(3) = 7.9e-46
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 448 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 507
H R RK + Q SL S+F SN+S + + +L + + +T T ++E
Sbjct: 379 HSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAMA 436
Query: 508 SH-HHSNKIP 516
+ NK+P
Sbjct: 437 TVVKEKNKVP 446
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 314 (115.6 bits), Expect = 9.8e-46, Sum P(4) = 9.8e-46
Identities = 84/244 (34%), Positives = 129/244 (52%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + S ++ ++LD DADI+C QETK+ + L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTSERXXXXLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+ +R R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 IIEGYNSYSFFSRN----RSGYSGVATFCK--------DSATPMAAEEGLSGLLATHNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD+ R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLT 169
Query: 160 FKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 214
FK++F+ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 215 VESG 218
G
Sbjct: 230 SNLG 233
Score = 310 (114.2 bits), Expect = 3.5e-45, Sum P(4) = 3.5e-45
Identities = 84/254 (33%), Positives = 123/254 (48%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
++ ++LD DADI+C QETK+ + L + +GY S+ +R R+GYSGVATFC
Sbjct: 31 AMGRILDKLDADIVCLQETKVTSERXXXXLAIIEGYNSYSFFSRN----RSGYSGVATFC 86
Query: 80 RVKSPFSSTEVALP--VAAEEGFTGLLETSGSKIMEGLEDF-SKDELLKIDSEGRCVITD 136
+ + + E L +A G G E L S+ L + R
Sbjct: 87 KDSATPMAAEEGLSGLLATHNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGK 146
Query: 137 HGHFILFNVYGPRADSEDTVRIQFKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAID 193
L NVY P AD+ R+ FK++F+ R E LL G + ++GDLN A ID
Sbjct: 147 QKTLTLINVYCPHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPID 206
Query: 194 RCDAG--PDFAKNEFRIWFRSMLVESG---GS----FFDVFRSKHPERREAYTCWPSNTG 244
DA F ++ R W +L G GS F D +R P++ A+TCW + +G
Sbjct: 207 HWDAVNLECFEEDPGRKWMDGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSG 266
Query: 245 AEQFNYGTRIDHIL 258
A NYG+R+D++L
Sbjct: 267 ARHLNYGSRLDYVL 280
Score = 186 (70.5 bits), Expect = 9.8e-46, Sum P(4) = 9.8e-46
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 571 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 620
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 75 (31.5 bits), Expect = 9.8e-46, Sum P(4) = 9.8e-46
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 310 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 354
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 9.8e-46, Sum P(4) = 9.8e-46
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 451 RARKKAKKSQLGQLSLKSFFHKRSN 475
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 313 (115.2 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 85/244 (34%), Positives = 129/244 (52%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + S ++ ++LD DADI+C QETK+ L L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTTHVLCQXLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+ +R R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 IIEGYNSYSFFSRN----RSGYSGVATFCK--------DSATPMAAEEGLSGLLATHNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD+ R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLT 169
Query: 160 FKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 214
FK++F+ R E LL G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 215 VESG 218
G
Sbjct: 230 SNLG 233
Score = 309 (113.8 bits), Expect = 5.0e-45, Sum P(4) = 5.0e-45
Identities = 85/254 (33%), Positives = 123/254 (48%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
++ ++LD DADI+C QETK+ L L + +GY S+ +R R+GYSGVATFC
Sbjct: 31 AMGRILDKLDADIVCLQETKVTTHVLCQXLAIIEGYNSYSFFSRN----RSGYSGVATFC 86
Query: 80 RVKSPFSSTEVALP--VAAEEGFTGLLETSGSKIMEGLEDF-SKDELLKIDSEGRCVITD 136
+ + + E L +A G G E L S+ L + R
Sbjct: 87 KDSATPMAAEEGLSGLLATHNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGK 146
Query: 137 HGHFILFNVYGPRADSEDTVRIQFKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAID 193
L NVY P AD+ R+ FK++F+ R E LL G + ++GDLN A ID
Sbjct: 147 QKTLTLINVYCPHADAGKPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPID 206
Query: 194 RCDAG--PDFAKNEFRIWFRSMLVESG---GS----FFDVFRSKHPERREAYTCWPSNTG 244
DA F ++ R W +L G GS F D +R P++ A+TCW + +G
Sbjct: 207 HWDAVNLECFEEDPGRKWMDGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSG 266
Query: 245 AEQFNYGTRIDHIL 258
A NYG+R+D++L
Sbjct: 267 ARHLNYGSRLDYVL 280
Score = 186 (70.5 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 571 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 620
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 75 (31.5 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 310 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 354
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 1.3e-45, Sum P(4) = 1.3e-45
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 451 RARKKAKKSQLGQLSLKSFFHKRSN 475
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 330 (121.2 bits), Expect = 5.3e-37, Sum P(2) = 5.3e-37
Identities = 96/313 (30%), Positives = 153/313 (48%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++NVNG++ + F S +++ AD+IC QE K+++ + +G+
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCR--VKSPFSSTEVA---LPVAAEEGFTGLLETSGSK 110
+S+F T K R GYSGV + + V P + E LPV ++ ++ K
Sbjct: 61 DSYF----TFPKIRKGYSGVGFYVKKDVAIPVKAEEGITGILPVRGQK-YSYSEAPEHEK 115
Query: 111 IMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---HK 167
I +D + IDSEGRC++ D FIL VY P E+ R++++ F+ +
Sbjct: 116 IGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAFYKALRE 173
Query: 168 RWEFLLCQG-RRIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESG-G 219
R E L+ +G R+I +VGD+NI ID D ++ E R W R +L+ S G
Sbjct: 174 RIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLLPSRLG 233
Query: 220 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHDLQSHNFVT 277
D+ R +HP R+ +TCW + NYGTRID+ L L Q D+ + +
Sbjct: 234 LLLDIGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLPWVQDADIMAEVMGS 293
Query: 278 CHVNECDILIDYK 290
H C + +D K
Sbjct: 294 DH---CPVYLDLK 303
Score = 133 (51.9 bits), Expect = 5.3e-37, Sum P(2) = 5.3e-37
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 530 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 589
V+ V ++ + G K N A W++I E + PLC+GHKEPC V+KP
Sbjct: 419 VSIEVLDNNNESDIGLTVKKKVENGNA---WKQI--FSERAPPLCEGHKEPCKYLTVRKP 473
Query: 590 GPTFGRRFFVCARAEG 605
G +GR+F++CAR G
Sbjct: 474 GINYGRKFWICARPVG 489
Score = 57 (25.1 bits), Expect = 4.9e-29, Sum P(2) = 4.9e-29
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 422 ENCRDSANVASHSTITQGSSN-HISPFHVDRARKKAKKSQLG----QLSLKSFFHKRSNV 476
EN SA+ S T+++ +S + + ++ R+K + L Q K +K +V
Sbjct: 360 ENVSASASSGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDV 419
Query: 477 SHD--DNNSITDTSLNVNNSV 495
S + DNN+ +D L V V
Sbjct: 420 SIEVLDNNNESDIGLTVKKKV 440
Score = 55 (24.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 287 IDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCLGE 322
IDY P P W + + GSDH PVY+ L E
Sbjct: 268 IDYTLATPDLLP-WVQDADIMAEVMGSDHCPVYLDLKE 304
Score = 52 (23.4 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 355 KREVAKQGKSCKFSGSLPAESNSTGDTEDCS-ENVDRSLNNYCDSGI 400
KR +Q K F E T TED S E +D NN D G+
Sbjct: 390 KRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLDN--NNESDIGL 434
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 400 ILQGVYCSSSNQESEGEFTK 419
IL GVYC ++ E+ E+ +
Sbjct: 146 ILIGVYCPVNSGENRLEYRR 165
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 242 (90.2 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 69/201 (34%), Positives = 104/201 (51%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 24 TFESMFDILEADIVVVQETKIQRKDLRDDMVLVPGWDCYFSLPKV----KKGYSGVAIYT 79
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKI----------MEG---LEDFSKDEL--L 124
R ++T P+ AEEG TG L S + + G +E SK +L
Sbjct: 80 R-----NAT--CAPIRAEEGLTGTLCPPNSLVSFRDLPEDQQIGGYPTIEQLSKLKLDAE 132
Query: 125 KIDSEGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFHKRWEFLLCQGRRIFVV 182
+DSEGRCVI + F+L +Y P R +S D R F L R L+ G+R+FV
Sbjct: 133 TLDSEGRCVILEFPAFVLIGLYCPANRDESRDAFRQNF-LDLMDARVRNLVALGKRVFVT 191
Query: 183 GDLNIAPAAIDRCDAGPDFAK 203
GD+NI+ ID A + K
Sbjct: 192 GDINISRGEIDAAHAAENIKK 212
Score = 127 (49.8 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 572 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 620
P C H E C++ KKPGP FGR F++C R GP+ N E C F WA
Sbjct: 552 PKCGEHGEECISLKTKKPGPNFGRTFWICPRPLGPSGNKEKGTEWRCSTFIWA 604
Score = 123 (48.4 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 222 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 260
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 252 FDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS 290
Score = 44 (20.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 400 ILQGVYCSSSNQESEGEFTKTIENCRDS 427
+L G+YC ++ ES F + + D+
Sbjct: 149 VLIGLYCPANRDESRDAFRQNFLDLMDA 176
Score = 42 (19.8 bits), Expect = 1.9e-34, Sum P(4) = 1.9e-34
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 461 LGQLSLKSFFHKRSNVSHDDN 481
+GQ +LK FF + + DN
Sbjct: 461 IGQSTLKGFFKPKCTLEPKDN 481
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 224 (83.9 bits), Expect = 2.0e-31, Sum P(4) = 2.0e-31
Identities = 69/203 (33%), Positives = 104/203 (51%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDILEADIVVIQEAKIQRKDLQDDMVLVPGWDVYFSLP----KFKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLED-----FSK-DELLKI------DSE 129
S++ + P+ AEEG TG+L S +K E D + + D+L I DSE
Sbjct: 54 ---SSKCS-PIRAEEGITGILCPPNSTTKFRELSPDQQIGGYPRPDQLSDIIDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHK----RWEFLLCQGRRIFVVGDL 185
GRC+I + F+L VY P + D R F+ Q FHK R L+ G+++ + GDL
Sbjct: 110 GRCMILEFPAFVLIGVYSPA--TRDETRTDFR-QAFHKAMDARVRNLVAMGKQVVLTGDL 166
Query: 186 NIAPAAIDRCDAGPDFAKNEFRI 208
NI +D K E I
Sbjct: 167 NIIRNELDTAGILERLRKEEMTI 189
Score = 131 (51.2 bits), Expect = 2.0e-31, Sum P(4) = 2.0e-31
Identities = 54/206 (26%), Positives = 87/206 (42%)
Query: 425 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 484
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRAP--------GQKSLTGFFKPKNPISTPATDG- 474
Query: 485 TDTSLNVNNSVTDTS-LSQEEVPESHHHSNKIPVTDYS----CSVHELHGVNSSVCSHDQ 539
TS+ S T S S ++P + ++K S L+G S +
Sbjct: 475 ERTSIRTTPSPTKCSNASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGGRSFNSGKED 534
Query: 540 DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 598
D K + + E W ++ L + +P C+ H EPC++ KKPG GR F+
Sbjct: 535 DTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKPGINCGRSFY 591
Query: 599 VCARAEGPASNPEAN----CGYFKWA 620
+C R GP+ E CG F W+
Sbjct: 592 ICGRPLGPSGEKEKGTEWRCGTFIWS 617
Score = 106 (42.4 bits), Expect = 2.0e-31, Sum P(4) = 2.0e-31
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 222 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 260
+D+ R HP+R YTCW + A N+G+RID++LC+
Sbjct: 224 YDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCS 262
Score = 47 (21.6 bits), Expect = 2.0e-31, Sum P(4) = 2.0e-31
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 308 LEGSDHAPVYMCLGE 322
L GSDH PVY L +
Sbjct: 278 LLGSDHCPVYATLSD 292
Score = 39 (18.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 400 ILQGVYCSSSNQESEGEFTKTIENCRDS 427
+L GVY ++ E+ +F + D+
Sbjct: 121 VLIGVYSPATRDETRTDFRQAFHKAMDA 148
>SGD|S000000115 [details] [associations]
symbol:APN2 "Class II abasic (AP) endonuclease involved in
repair of DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0016829 "lyase activity" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IGI] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020848 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 SGD:S000000115
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 EMBL:BK006936 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 GO:GO:0008081 KO:K10772 GO:GO:0008311
OrthoDB:EOG4GQTDH EMBL:Z35780 EMBL:AY693183 PIR:S45753
RefSeq:NP_009534.1 ProteinModelPortal:P38207 DIP:DIP-3930N
IntAct:P38207 MINT:MINT-515848 STRING:P38207 EnsemblFungi:YBL019W
GeneID:852262 KEGG:sce:YBL019W CYGD:YBL019w HOGENOM:HOG000246560
OMA:MYTVWNT NextBio:970856 Genevestigator:P38207 GermOnline:YBL019W
Uniprot:P38207
Length = 520
Score = 218 (81.8 bits), Expect = 2.6e-24, Sum P(4) = 2.6e-24
Identities = 74/229 (32%), Positives = 108/229 (47%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFH---KRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFA 202
F+L+F +R L G++I ++GD+N+ ID D F+
Sbjct: 192 GEMFRLRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFS 240
Score = 106 (42.4 bits), Expect = 2.6e-24, Sum P(4) = 2.6e-24
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 572 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 619
PLC+ H E + + K GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCR-HGEESMLKT-SKTSANPGRKFWICKRSRGDSNNTESSCGFFQW 519
Score = 56 (24.8 bits), Expect = 2.6e-24, Sum P(4) = 2.6e-24
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 232 RREAYTCWPSNTGAEQFNYGTRIDHIL 258
R + YT W NYG+RID IL
Sbjct: 305 RLKMYTVWNMLKNLRPSNYGSRIDFIL 331
Score = 53 (23.7 bits), Expect = 2.6e-24, Sum P(4) = 2.6e-24
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 310 GSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKS 364
GSDH PVY L + P Q P +RY +R ++ + K++ K+
Sbjct: 351 GSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLRN--HNVLEMFAKKDTNKESNK 408
Query: 365 CKF 367
K+
Sbjct: 409 QKY 411
Score = 43 (20.2 bits), Expect = 2.7e-23, Sum P(4) = 2.7e-23
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 437 TQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDD 480
T SN + V + K S + SL SFF K N DD
Sbjct: 402 TNKESNK-QKYCVSKVMNTKKNSNIKNKSLDSFFQK-VNGEKDD 443
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 140 (54.3 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 53/178 (29%), Positives = 83/178 (46%)
Query: 97 EEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+EG++G+ ++ + K+E D EGR + + F L Y P A S V
Sbjct: 118 KEGYSGVAMLCKTEPLNVTYGIGKEEH---DKEGRVITAEFPDFFLVTAYVPNA-SRGLV 173
Query: 157 RIQFKLQFFHKRWEFLLC--QGRRIFVV-GDLNIAPAAID-------RCDAGPDFAKNEF 206
R+ ++ + + + LC R+ V+ GDLN+A ID R +AG F E
Sbjct: 174 RLDYR-KTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG--FTPEE- 229
Query: 207 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 264
R F + L+E+G F D FR +P++ AYT W A N G R+D+ + + L
Sbjct: 230 REGF-TQLLEAG--FTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFVLSSALL 284
Score = 112 (44.5 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NV+GLR V + G + D DI+C QETK + L +D+ Y +
Sbjct: 55 MKITSWNVDGLRAWVKKNGL--DWVRKEDPDILCLQETKCAEKALPADITGMPEYPHKY- 111
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSST 88
+ DK GYSGVA C+ + P + T
Sbjct: 112 WAGSEDK--EGYSGVAMLCKTE-PLNVT 136
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 137 (53.3 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L+ L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQ-LAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 332
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFS 86
+ SF+SC+ + + GYSG A R+K P S
Sbjct: 333 DHSFWSCSVS----KLGYSGTAIISRIK-PLS 359
Score = 126 (49.4 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 42/150 (28%), Positives = 68/150 (45%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLLCQ---GRRIFVVG 183
D+EGR V + F L N Y P + + R+ ++++ + + + + + + + G
Sbjct: 370 DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTG 428
Query: 184 DLNIAPAAIDRCD-AGPDFAKN---EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
DLN A ID + AG + E R F + L++ G F D FR +HP YT W
Sbjct: 429 DLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRKQHPGV-VGYTYW 485
Query: 240 PSNTGAEQFNYGTRIDHILCAGPCLHQKHD 269
G + N G R+D+ L + HD
Sbjct: 486 GYRHGGRKTNKGWRLDYFLVSQSIAANVHD 515
Score = 38 (18.4 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 308 LEGSDHAPVYMCL 320
+ GSDH P+ + L
Sbjct: 522 INGSDHCPIGLIL 534
>GENEDB_PFALCIPARUM|PF14_0285 [details] [associations]
symbol:PF14_0285 "exodeoxyribonuclease III,
putative" species:5833 "Plasmodium falciparum" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 120 (47.3 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 3 IVTYNVNGLRQRVSQF----GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADG-- 54
+ ++NVNG ++ L + L D DI+C QETK +++D L+ AD
Sbjct: 6 LASWNVNGWKKSCEIIKRNDDDLVQFLKKLDIDILCLQETKTNESVIENDCNLLEADSNM 65
Query: 55 YESFFSCTRTS--DKGRTGYSGVATFCR 80
YES+++C + DK GYSG+AT+ +
Sbjct: 66 YESYWTCCKKKKGDKTHKGYSGLATYVK 93
Score = 109 (43.4 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH----KRWEFLLCQGRRIFVVG 183
+EGR +IT H HFI+ N+Y P + + R+ +K++FFH K + + G I ++G
Sbjct: 176 NEGRILITMHKHFIIVNIYAPYS-GHNYERLYYKVRFFHAVRAKIIQLRIVTGLPIILLG 234
Query: 184 DLNIA 188
D NI+
Sbjct: 235 DFNIS 239
Score = 73 (30.8 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 474 SNVS---HDDNNSITDTSLNVNNSVTDTSLSQEEVPESH---HHSNK 514
+NVS HD S TD+++NV+N+ D LS + H HH+NK
Sbjct: 354 NNVSDDFHDVFKSPTDSNINVSNNKNDHPLSSTNKDDHHGNNHHNNK 400
Score = 68 (29.0 bits), Expect = 2.9e-12, Sum P(4) = 2.9e-12
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 220 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 257
+ D F HP +TCW + N G+RID+I
Sbjct: 607 NMIDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYI 644
Score = 41 (19.5 bits), Expect = 2.9e-12, Sum P(4) = 2.9e-12
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 453 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 512
+K KK+ L + SF + ++ + L N+++ DTS ++ E
Sbjct: 678 QKLKKKNSLNYHDMNSFQTNQYYANYFNKIKTKQKYLLSNDNINDTSRKKKNKQEKDEEQ 737
Query: 513 NKIPVTD 519
++ + D
Sbjct: 738 DEHKLED 744
>UNIPROTKB|Q8ILF8 [details] [associations]
symbol:PF14_0285 "Exodeoxyribonuclease III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 120 (47.3 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 3 IVTYNVNGLRQRVSQF----GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADG-- 54
+ ++NVNG ++ L + L D DI+C QETK +++D L+ AD
Sbjct: 6 LASWNVNGWKKSCEIIKRNDDDLVQFLKKLDIDILCLQETKTNESVIENDCNLLEADSNM 65
Query: 55 YESFFSCTRTS--DKGRTGYSGVATFCR 80
YES+++C + DK GYSG+AT+ +
Sbjct: 66 YESYWTCCKKKKGDKTHKGYSGLATYVK 93
Score = 109 (43.4 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH----KRWEFLLCQGRRIFVVG 183
+EGR +IT H HFI+ N+Y P + + R+ +K++FFH K + + G I ++G
Sbjct: 176 NEGRILITMHKHFIIVNIYAPYS-GHNYERLYYKVRFFHAVRAKIIQLRIVTGLPIILLG 234
Query: 184 DLNIA 188
D NI+
Sbjct: 235 DFNIS 239
Score = 73 (30.8 bits), Expect = 9.1e-13, Sum P(3) = 9.1e-13
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 474 SNVS---HDDNNSITDTSLNVNNSVTDTSLSQEEVPESH---HHSNK 514
+NVS HD S TD+++NV+N+ D LS + H HH+NK
Sbjct: 354 NNVSDDFHDVFKSPTDSNINVSNNKNDHPLSSTNKDDHHGNNHHNNK 400
Score = 68 (29.0 bits), Expect = 2.9e-12, Sum P(4) = 2.9e-12
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 220 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 257
+ D F HP +TCW + N G+RID+I
Sbjct: 607 NMIDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYI 644
Score = 41 (19.5 bits), Expect = 2.9e-12, Sum P(4) = 2.9e-12
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 453 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 512
+K KK+ L + SF + ++ + L N+++ DTS ++ E
Sbjct: 678 QKLKKKNSLNYHDMNSFQTNQYYANYFNKIKTKQKYLLSNDNINDTSRKKKNKQEKDEEQ 737
Query: 513 NKIPVTD 519
++ + D
Sbjct: 738 DEHKLED 744
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 143 (55.4 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 46/138 (33%), Positives = 65/138 (47%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL---LCQGRRIFVVG 183
D EGR + + LFN+Y P +D R+ FK+QF+ +L L G I + G
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNGQ-KDEERLNFKMQFYADFLVYLDKLLKDGFEIIICG 151
Query: 184 DLNIAPAAID----RCDAGPD-FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 238
D+N A ID + +A F E R W +L + G F D FR + E +E Y+
Sbjct: 152 DVNTAHKEIDLTHPKANANTSGFLPIE-RAWIDDLL-KLG--FIDTFREINGEIKEKYSW 207
Query: 239 WPSNTGAEQFNYGTRIDH 256
W A + N G RID+
Sbjct: 208 WSYRMKARERNVGWRIDY 225
Score = 85 (35.0 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + +L + D I FQE K + + YE F
Sbjct: 8 MKLLSWNVNGLRA-ICDKNALDWIAQE-QIDFIGFQEIKAHEDKFPKKI-----YEYPFK 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTE 89
+ R GYSGV + C S E
Sbjct: 61 HMYFNSAKRAGYSGVMSLCNFNSEVKKCE 89
Score = 39 (18.8 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 310 GSDHAPV 316
GSDHAPV
Sbjct: 247 GSDHAPV 253
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 134 (52.2 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 47/172 (27%), Positives = 80/172 (46%)
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRA-----DSEDTVRIQFKLQFFHKRWEFLLCQGRRI 179
+ D GR + ++ F L NVY P + + E +R + Q + K+ + L + +
Sbjct: 512 EFDDVGRMITAEYEKFYLINVYVPNSGRKLVNLEPRMRWEKLFQAYVKKLDAL----KPV 567
Query: 180 FVVGDLNIAPAAIDRCDAGPDFAKNE-FRIWFRSMLVESGG-SFFDVFRSKHPERREAYT 237
+ GD+N++ ID + + KN F R + E G F D FR +P+R+ AYT
Sbjct: 568 VICGDMNVSHMPID-LENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYT 626
Query: 238 CWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 287
W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 627 FWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
Score = 110 (43.8 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 427 LKICSWNVAGLRAWLKKDGL--QLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 484
Query: 61 CTRTSDKGRTGYSGVATFCRV 81
C G GY+GVA + ++
Sbjct: 485 CM----PG--GYAGVAIYSKI 499
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 120 (47.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 32/99 (32%), Positives = 47/99 (47%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NG+R + L ADI+C QETK + D GY ++
Sbjct: 1 MRIITLNLNGIRAAARR--GFFDWLKRQKADIVCLQETKACLEITNGDQFHPKGYHCYYH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEG 99
D ++GYSGV +CR K +T + A +EG
Sbjct: 59 -----DAEKSGYSGVGIYCREKPDRVTTRLGWEHADKEG 92
Score = 109 (43.4 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 43/173 (24%), Positives = 75/173 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADS-EDTVRIQFK-LQFFHKRWEFLLCQGRRIFVVGD 184
D EGR + D G + ++Y P + E +I+F + + KR + ++ R + GD
Sbjct: 89 DKEGRYIQADFGSLSVASLYMPSGTTGEHRQKIKFDFMDRYMKRLKNIVHSKRSFIICGD 148
Query: 185 LNIAPAAID--RCDAGPDFAK--NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWP 240
NI ID + ++ E R W + + G D FR + ++ + YT W
Sbjct: 149 WNIVHKEIDIKNFKSNQKYSGCLPEERAWLDEVFTKVG--LVDAFRVVN-QKPDQYTWWS 205
Query: 241 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH--VNECDILIDYKR 291
S A + N G RID+ + K+ ++S + ++IDY+R
Sbjct: 206 SRGRAWEKNVGWRIDYQVITSDL---KNSVKSERIYKDKRFSDHAPLIIDYER 255
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 144 (55.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 51/149 (34%), Positives = 71/149 (47%)
Query: 121 DELLKIDSEGRC---VITDHGHFI-LFNVYGPRADSEDTVRIQFKLQFFH---KRWEFLL 173
DE+ +D E R VI+ I L ++Y P A + + R ++K+QF +R L
Sbjct: 84 DEIY-MDGEARYIEGVISFFDKCIRLISIYIPNAQAAGSPRFEYKMQFHDALARRIHGYL 142
Query: 174 CQGRRIFVVG-DLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPE 231
I ++G D+N AP ID D F I RS L E FD FR K+P
Sbjct: 143 LNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYPT 202
Query: 232 RREAYTCWPSNTGAEQFNYGTRIDHILCA 260
++E ++ W G Q N G RIDHIL +
Sbjct: 203 KQE-FSWWDYRGGGLQRNEGMRIDHILAS 230
Score = 80 (33.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ T+NVN +RQR ++ LL S + D++ QE K + + + Y
Sbjct: 7 LKVATWNVNSIRQRAE---AVSALLVSENLDVLLLQELKCQESDFPLHVFNDLSYNVILK 63
Query: 61 CTRTSDKGRTGYSGVATFCR 80
C + GY+GVA R
Sbjct: 64 CQK-------GYNGVAIASR 76
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 131 (51.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 49/171 (28%), Positives = 75/171 (43%)
Query: 97 EEGFTG--LLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
+EG++G LL K+ G+ + D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCLKVSYGIGEEEHDQ------EGRVIVAEFDAFVLVTAYVPNA-GRG 177
Query: 155 TVRIQFKLQFFHKRWEFL--LCQGRRIFVVGDLNIAPAAID-RCDAG----PDFAKNEFR 207
VR++++ ++ +FL L + + + GDLN+A ID R G F E R
Sbjct: 178 LVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-R 236
Query: 208 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 258
F +L D FR +P AYT W A N G R+D+ L
Sbjct: 237 QGFGELL--QAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFL 285
Score = 91 (37.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELSGLPHQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 120 SAP--SDK--EGYSGVGLLSR 136
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 124 (48.7 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 38/142 (26%), Positives = 67/142 (47%)
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWE-FL--LCQGRRI 179
+ K D+EGR + ++ F + N Y P A + R+ ++++ + ++ +L L + I
Sbjct: 188 IAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPI 247
Query: 180 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 236
GDLN+A ID + + F I R S +E G + D +R +P + +Y
Sbjct: 248 IWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKG--YVDSYRHFNPGKEGSY 305
Query: 237 TCWPSNTGAEQFNYGTRIDHIL 258
T W G N G R+D+ +
Sbjct: 306 TFWSYLGGGRSKNVGWRLDYFV 327
Score = 102 (41.0 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NV G + +S+ + ++ + D++C QETK+ +K D M GYE F
Sbjct: 105 MKIISWNVAGFKSVLSK--GFTEYVEKENPDVLCLQETKINPSNIKKDQ-MPKGYEYHF- 160
Query: 61 CTRTSDKGRTGYSGVAT 77
KG G +GV T
Sbjct: 161 -IEADQKGHHG-TGVLT 175
Score = 37 (18.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 306 TRLEGSDHAPV 316
T + GSDH P+
Sbjct: 344 TSVMGSDHCPI 354
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 130 (50.8 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 44/139 (31%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ + FIL Y P A VR++++ ++ +FL L + + + GD
Sbjct: 151 DQEGRVIVAEFESFILVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGD 209
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F ML D FR +P AYT W
Sbjct: 210 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGEML--QAVPLADSFRHLYPNTAYAYTFW 266
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 267 TYMMNARSKNVGWRLDYFL 285
Score = 90 (36.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|Q9KQY7 [details] [associations]
symbol:VC1860 "Exodeoxyribonuclease III" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008853 "exodeoxyribonuclease III
activity" evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 113 (44.8 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ L+D D+I QE K+ + V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQALIDKHQPDVIGLQEIKVHDEAFPRQEVEAMGYQVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEE 98
G+ + GVA C+ ++P + P EE
Sbjct: 58 -------GQKAHYGVAILCK-QTPVEVIK-GFPTDNEE 86
Score = 103 (41.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 39/137 (28%), Positives = 63/137 (45%)
Query: 142 LFNVYGPRADS-EDTVRIQFKLQFFHKRWEFLL---CQGRRIFVVGDLNIAPAAID---- 193
+ N Y P+ D+ E + +K QF+ +L R+ V+GD+NI+P +D
Sbjct: 106 ILNGYFPQGDNVEHETKFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIG 165
Query: 194 -----R-CDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQ 247
R G + E R W +++L + G D FR HP+ + ++ + + +
Sbjct: 166 EANRKRWLQTGKCSFQPEEREWLQTLL-DWG--LVDTFRQLHPDVSDQFSWFDYRSRGFE 222
Query: 248 FNYGTRIDHILCAGPCL 264
N G RID IL A P L
Sbjct: 223 DNRGLRIDVIL-ATPTL 238
>TIGR_CMR|VC_1860 [details] [associations]
symbol:VC_1860 "exodeoxyribonuclease III" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 113 (44.8 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ L+D D+I QE K+ + V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQALIDKHQPDVIGLQEIKVHDEAFPRQEVEAMGYQVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEE 98
G+ + GVA C+ ++P + P EE
Sbjct: 58 -------GQKAHYGVAILCK-QTPVEVIK-GFPTDNEE 86
Score = 103 (41.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 39/137 (28%), Positives = 63/137 (45%)
Query: 142 LFNVYGPRADS-EDTVRIQFKLQFFHKRWEFLL---CQGRRIFVVGDLNIAPAAID---- 193
+ N Y P+ D+ E + +K QF+ +L R+ V+GD+NI+P +D
Sbjct: 106 ILNGYFPQGDNVEHETKFPYKRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIG 165
Query: 194 -----R-CDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQ 247
R G + E R W +++L + G D FR HP+ + ++ + + +
Sbjct: 166 EANRKRWLQTGKCSFQPEEREWLQTLL-DWG--LVDTFRQLHPDVSDQFSWFDYRSRGFE 222
Query: 248 FNYGTRIDHILCAGPCL 264
N G RID IL A P L
Sbjct: 223 DNRGLRIDVIL-ATPTL 238
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 129 (50.5 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 42/139 (30%), Positives = 62/139 (44%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ ++ F+L Y P A VR++++ ++ +FL L + + + GD
Sbjct: 152 DQEGRVIVAEYDAFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD 210
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLTDSFRHLYPNTAYAYTFW 267
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 88 (36.0 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L +L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPVELQELSGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 127 (49.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 49/172 (28%), Positives = 74/172 (43%)
Query: 97 EEGFTG---LLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G L K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 177
Query: 154 DTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGDLNIAPAAID-RCDAG----PDFAKNEF 206
VR++++ ++ +FL L + + + GDLN+A ID R G F E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE- 236
Query: 207 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 258
R F +L D FR +P AYT W A N G R+D+ L
Sbjct: 237 RQGFGELL--QAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 126 (49.4 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 42/139 (30%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ + F+L Y P A VR++++ ++ +FL L + + + GD
Sbjct: 151 DQEGRVIVAEFESFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGD 209
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 210 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAYTFW 266
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 267 TYMMNARSKNVGWRLDYFL 285
Score = 90 (36.7 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 126 (49.4 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 42/139 (30%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ + F+L Y P A VR++++ ++ +FL L + + + GD
Sbjct: 152 DQEGRVIVAEFDTFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD 210
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAYTFW 267
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLPHQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 120 SAP--SDK--EGYSGVGLLSR 136
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 126 (49.4 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 42/139 (30%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ + F+L Y P A VR++++ ++ +FL L + + + GD
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD 210
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFW 267
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 126 (49.4 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 42/139 (30%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ + F+L Y P A VR++++ ++ +FL L + + + GD
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD 210
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFW 267
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 125 (49.1 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 42/139 (30%), Positives = 60/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ + F+L Y P A VR++++ ++ FL L + + + GD
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGD 210
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFW 267
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 125 (49.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 42/139 (30%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ + F+L Y P A VR++++ ++ +FL L + + + GD
Sbjct: 151 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDKAFCKFLKDLASRKPLVLCGD 209
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 210 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLTDSFRHLYPNTPYAYTFW 266
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 267 TYMMNARAKNVGWRLDYFL 285
Score = 89 (36.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQDLPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 125 (49.1 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 42/139 (30%), Positives = 60/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGD 184
D EGR ++ + F+L Y P A VR++++ ++ FL L + + + GD
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGD 210
Query: 185 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 239
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFW 267
Query: 240 PSNTGAEQFNYGTRIDHIL 258
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 84 (34.6 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE-SFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSYQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S + GYSGV R
Sbjct: 120 SAPXXKE----GYSGVGLLSR 136
>TIGR_CMR|SO_3037 [details] [associations]
symbol:SO_3037 "exodeoxyribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372
GO:GO:0003677 GO:GO:0006281 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 RefSeq:NP_718605.1
ProteinModelPortal:Q8ECT7 GeneID:1170722 KEGG:son:SO_3037
PATRIC:23525710 Uniprot:Q8ECT7
Length = 270
Score = 107 (42.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NGLR R+ Q L+ L+DS DII QETK+ + V A GY +
Sbjct: 1 MKIVSFNINGLRSRLHQ---LQALIDSHQPDIIGLQETKVHDEAFPLAEVEAMGYHVHYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTE 89
+ + G S VA +V+ F++ E
Sbjct: 58 GGK-AHYGVAMLSKVAPL-KVQKGFATDE 84
Score = 94 (38.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 51/188 (27%), Positives = 80/188 (42%)
Query: 96 AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD----HGH-FILFNVYGPRA 150
A G L + + K+ +G F+ DE D++ R +I +G + N Y P+
Sbjct: 61 AHYGVAMLSKVAPLKVQKG---FATDEE---DAQRRMIIGTFAQANGRPLTVLNGYFPQG 114
Query: 151 DSED-TVRIQFKLQFFHKRWEFLLCQGRR---IFVVGDLNIAPAAID---------R-CD 196
+S D + K +F+ L I ++GD+NI+P +D R
Sbjct: 115 ESIDHPTKYPAKRKFYQDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLK 174
Query: 197 AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 256
G + E R W +++ + G D FR HP+R E Y+ + + N G RID
Sbjct: 175 TGKCSFQPEEREWLKTL--QDWG-LVDTFRQLHPDRSERYSWFDYRSKGFDDNRGLRIDV 231
Query: 257 ILCAGPCL 264
IL A P L
Sbjct: 232 IL-ATPSL 238
>UNIPROTKB|K7GNL1 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726 Pfam:PF03372
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 EMBL:CU856438
Ensembl:ENSSSCT00000035798 Uniprot:K7GNL1
Length = 89
Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYS 73
+ +GY S+FS +R R+GYS
Sbjct: 62 IIEGYNSYFSFSRN----RSGYS 80
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 103 (41.3 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 34/137 (24%), Positives = 60/137 (43%)
Query: 138 GHFILFNVYGPRADSED-TVRIQFKLQFFHKRWEFLLCQGRR---IFVVGDLNIAPAAID 193
G+ + N Y P+ +S D ++ K QF+ +L + +R + ++GD+NI+P +D
Sbjct: 101 GNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD 160
Query: 194 RCDAGPDFAKNEFRIWFRSMLVES--------GGSFFDVFRSKHPERREAYTCWPSNTGA 245
G + K R S L E D FR +P+ + ++ + +
Sbjct: 161 -IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKG 219
Query: 246 EQFNYGTRIDHILCAGP 262
N G RID +L + P
Sbjct: 220 FDDNRGLRIDLLLASQP 236
Score = 93 (37.8 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++N+NGLR R Q L +++ D+I QETK+ + V GY F+
Sbjct: 1 MKFVSFNINGLRARPHQ---LEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFS 86
G+ G+ GVA + ++P +
Sbjct: 58 -------GQKGHYGVALLTK-ETPIA 75
>CGD|CAL0001657 [details] [associations]
symbol:APN2 species:5476 "Candida albicans" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0034614 "cellular response to reactive oxygen
species" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 CGD:CAL0001657 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
KO:K10772 EMBL:AACQ01000244 EMBL:AACQ01000240 RefSeq:XP_710720.1
RefSeq:XP_710758.1 STRING:Q59LW6 GeneID:3647640 GeneID:3647674
KEGG:cal:CaO19.1836 KEGG:cal:CaO19.9394 Uniprot:Q59LW6
Length = 451
Score = 120 (47.3 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 65/212 (30%), Positives = 93/212 (43%)
Query: 9 NGLRQRVSQFGSLRKLL--DSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSD 66
N L+ F +L LL D + ET L++Q S LV Y+SF S T
Sbjct: 44 NQLKNN-KDFNTLFNLLQADIITLQELKLTETSLQQQ--MSQLVHLSDYKSFISIPVTK- 99
Query: 67 KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS-------KI-------- 111
KG +G + + + AEEG TG L +S S KI
Sbjct: 100 KGYSGVGLFIRNPKSNENKKHRKHLTVIKAEEGITGWLPSSSSSSSSSANKIPYRESANN 159
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ-FKLQFFH--- 166
+ G D K L +DSEGRCV + + ++F VY P A+S+ T + F+L F
Sbjct: 160 IGGYTDIEKLPGLHLDSEGRCVCVELADNTVIFAVYCP-ANSQCTYDGELFRLTFIKLLL 218
Query: 167 KRWEFL--LCQGRRIFVVGDLNIAPAAIDRCD 196
+R L L ++I ++GD+NIA ID +
Sbjct: 219 QRCYNLVKLYPQKKIVIMGDINIAIDMIDHAE 250
Score = 110 (43.8 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 42/123 (34%), Positives = 58/123 (47%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRK------LLDSFDADIICFQETKLRRQELK---SDL 49
++ +T+NVNG++ + L+ L + ADII QE KL L+ S L
Sbjct: 24 IRYITFNVNGVKTIFNYHPWNQLKNNKDFNTLFNLLQADIITLQELKLTETSLQQQMSQL 83
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCR-VKSPFSST--EVALPVAAEEGFTGLLET 106
V Y+SF S T + GYSGV F R KS + + + AEEG TG L +
Sbjct: 84 VHLSDYKSFISIPVT----KKGYSGVGLFIRNPKSNENKKHRKHLTVIKAEEGITGWLPS 139
Query: 107 SGS 109
S S
Sbjct: 140 SSS 142
Score = 77 (32.2 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 222 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 258
+D R R + YT W + T A Q N+G+RID IL
Sbjct: 322 YDTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLIL 358
Score = 40 (19.1 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 308 LEGSDHAPVY 317
L GSDH PV+
Sbjct: 377 LMGSDHCPVF 386
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 126 (49.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 48/136 (35%), Positives = 68/136 (50%)
Query: 132 CVITDHGHFI-LFNVYGPRADSEDTVRIQFKLQFFHKRWEFLLC--QGRRIFVVG-DLNI 187
CV+ H I + ++Y P S D+ Q+KL FF + E L + I ++G D N+
Sbjct: 113 CVVLHHNIKIRIASIYVPNGQSIDSDAFQYKLGFFDQLREHALSLLKKEEILILGGDYNV 172
Query: 188 APAAIDRCDAGP-D----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSN 242
AP ID D D F K+E R FRS+L G F D FR + ++ ++ W
Sbjct: 173 APYPIDVYDPEVMDGKLCFHKSE-REKFRSIL-NLG--FTDSFRVLNDYEKK-FSWWNYK 227
Query: 243 TGAEQFNYGTRIDHIL 258
GA Q N G RID++L
Sbjct: 228 AGAWQQNRGLRIDNLL 243
Score = 61 (26.5 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NVN +R+R+ + L++S DI QE K ++ V + GY+
Sbjct: 3 LKIATWNVNSIRKRLDHLCNW--LINSA-IDIALLQEIKCTDEQFPFFDVESLGYK---- 55
Query: 61 CTRTSDKGRTGYSGVATF 78
C K R G + + +
Sbjct: 56 CYVHGQKARNGVAIITRY 73
>TIGR_CMR|GSU_1539 [details] [associations]
symbol:GSU_1539 "exodeoxyribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 RefSeq:NP_952590.1 HSSP:P09030
ProteinModelPortal:Q74CY2 SMR:Q74CY2 GeneID:2687378
KEGG:gsu:GSU1539 PATRIC:22025925
BioCyc:GSUL243231:GH27-1521-MONOMER Uniprot:Q74CY2
Length = 271
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR R+ Q L +L+ + DII QETK++ + V A GY +
Sbjct: 1 MKLVSFNVNGLRSRLHQ---LEELVRTHRPDIIGLQETKVQDADFPLAAVQALGYHVIYH 57
Query: 61 CTRT 64
+T
Sbjct: 58 GQKT 61
Score = 86 (35.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 40/135 (29%), Positives = 58/135 (42%)
Query: 142 LFNVYGPRADSED-TVRIQFKLQFFHKRWEFLL--CQ-GRRIFVVGDLNIAPAAIDRCDA 197
+ N Y P+ +S D V+ K +F+ +L C + V+GD NIAP D
Sbjct: 106 VINGYFPQGESRDHPVKFPAKERFYADVLAYLKSSCDPDAPLAVMGDFNIAPVDPD-IGI 164
Query: 198 GPDFAKNEFRIWFRSMLVESGGSF--------FDVFRSKHPERREAYTCWPSNT-GAE-Q 247
G D AK R S L E F D +R +P+ + ++ + + G E +
Sbjct: 165 GADNAKRWLRTGKTSFLPEERAWFAALRDWGLHDSYRELYPDIDDRFSWFDYRSRGFESE 224
Query: 248 FNYGTRIDHILCAGP 262
G RIDHIL P
Sbjct: 225 PKRGLRIDHILLTRP 239
>TIGR_CMR|APH_0505 [details] [associations]
symbol:APH_0505 "exodeoxyribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_505100.1 ProteinModelPortal:Q2GKK1 STRING:Q2GKK1
GeneID:3931256 KEGG:aph:APH_0505 PATRIC:20949650 OMA:DVQIGIP
ProtClustDB:CLSK747329 BioCyc:APHA212042:GHPM-529-MONOMER
Uniprot:Q2GKK1
Length = 273
Score = 111 (44.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 48/180 (26%), Positives = 75/180 (41%)
Query: 92 LPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRAD 151
LPV ++ L E K +E +S +E I+ C T + + +VY P
Sbjct: 72 LPVVEVVSYSVLDE---GKELESAGSYSSEESRYIECTLEC--TGNKKIRVVSVYVPNGQ 126
Query: 152 SEDTVRIQFKLQFF-HKRWEFLLCQGRRIFVV--GDLNIAPAAIDRCDAGPDFAKNEFRI 208
++ +KL+F H + L F++ GD N+AP ID D + F I
Sbjct: 127 EVESETFFYKLKFLEHLKDRLLNIMKTEDFLIAGGDFNVAPEEIDVHDPKALDGRLCFHI 186
Query: 209 WFRSMLVES-GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 267
R+ E D+FR+ R+ ++ W G Q N G RID +L + P + K
Sbjct: 187 LERAKFREILNNGIVDIFRTFVGIDRKEFSWWNYREGGWQNNRGLRIDALL-SSPQIADK 245
Score = 70 (29.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 29/109 (26%), Positives = 49/109 (44%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++++T+NVN +R+R+ S+ L D+ QE K ++ + A GY+
Sbjct: 2 IRVITWNVNSIRKRIEHLCSV---LSEHSIDVAMLQEIKCTNEQFPFVELEALGYK---- 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS 109
C K R G + ++ K P EV +EG LE++GS
Sbjct: 55 CYVHGQKSRNGVAIIS-----KLPV--VEVVSYSVLDEGKE--LESAGS 94
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 90 (36.7 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
Score = 89 (36.4 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 97 EEGFTG--LLETSGS-KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G LL K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 177
Query: 154 DTVRIQFKLQFFHKRWEFL--LCQGRRIFVVGDLNIAPAAID 193
VR++++ ++ +FL L + + + GDLN+A ID
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID 219
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 130 (50.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 51/202 (25%), Positives = 86/202 (42%)
Query: 73 SGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKI------ 126
S FC + ++ L V EG+ + K G FSK E L +
Sbjct: 27 SNADIFCLQEIKLQEGQIDLNV---EGYYTYWNYAVKKGYSGTAIFSKKEPLSVTYGLGI 83
Query: 127 ---DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFL--LCQGRRIFV 181
D EGR + + F + +Y P + R+++++++ ++ L + + +
Sbjct: 84 EEHDQEGRVITLEFEDFYIITLYTPNS-KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVF 142
Query: 182 VGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 236
GDLN+A ID + P F+ E R F +L E G F D +R +P++ AY
Sbjct: 143 CGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCIL-EEG--FIDTYRYLYPDQEGAY 198
Query: 237 TCWPSNTGAEQFNYGTRIDHIL 258
+ W GA N G R+D+ +
Sbjct: 199 SWWSYRMGARAKNIGWRLDYFV 220
Score = 125 (49.1 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL + +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDLNV-EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSST 88
+ GYSG A F + K P S T
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT 78
Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 304 MSTRLEGSDHAPV 316
+++ + GSDH PV
Sbjct: 234 INSEVMGSDHCPV 246
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 123 (48.4 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 54/213 (25%), Positives = 98/213 (46%)
Query: 81 VKSPFSSTEVALPVAAEE--GFTG---LLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT 135
++ F + L V+ E+ G+ G L + + K+ +G+ D + D+ GR +I
Sbjct: 78 MEETFKNYTKTLVVSTEKNGGYAGVGLLSKCAPMKVHKGIGD------PEFDTAGRLIIA 131
Query: 136 DHGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLLCQGRR-------IFVVGDLNIA 188
+ F Y P + ++ V ++ + RWE LL + + + GDLN+A
Sbjct: 132 EFSKFYFIGAYVPNSGAK-LVNLEKR-----GRWEKLLTEKMKEMDEKKPVIYGGDLNVA 185
Query: 189 PAAIDRCDAGPDFAKNE---F----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPS 241
ID P+ +N+ F R WF ML E G F D FR+ HP+ ++ Y+ W
Sbjct: 186 HNEIDL--KNPESNRNKTAGFTDQERGWFSEML-ELG--FTDTFRAMHPDEKK-YSFWSY 239
Query: 242 NTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQS 272
+ Q + G R+D+ + + +++ + D+ S
Sbjct: 240 LANSRQKDVGWRLDYYVVSNRIMNKVKRSDIMS 272
Score = 43 (20.2 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 310 GSDHAPVYM 318
GSDHAPV M
Sbjct: 276 GSDHAPVVM 284
>UNIPROTKB|E1C286 [details] [associations]
symbol:E1C286 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF01149 Pfam:PF06831 Pfam:PF06839
PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51066
PROSITE:PS51068 SMART:SM00547 SMART:SM00898 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 OMA:TKDLICF
GeneTree:ENSGT00510000048146 EMBL:AADN02008928 IPI:IPI00592615
Ensembl:ENSGALT00000017443 ArrayExpress:E1C286 Uniprot:E1C286
Length = 600
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 565 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 623
Q + S P C H + CV ++V K GP GR FFVC P E CG+F+WA +K
Sbjct: 542 QWADLSFPFCH-HGKRCVMKMVLKLGPNNGRNFFVC-----PLQK-EKQCGFFQWAENK 593
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 468 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 527
+F H +SNV H S+ + VT + S + P S H K T + SVH+
Sbjct: 422 NFSHNQSNVYH----SVISIDKYCSTDVTSAASSSCQEPLSFKHIKKKQKTHHVPSVHQY 477
Query: 528 HG 529
+G
Sbjct: 478 NG 479
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 374 ESNSTGDTEDCSENVDRSLN--NY-CDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 430
E +S+ TE+ ++ D ++N Y C+ + + + G T + + + A +
Sbjct: 344 EVSSSLKTENVEDSADFNINLIKYPCNEFRKPSTEIKINRKAAFGNTTLVLTDLGNKAVL 403
Query: 431 ASHSTITQGSSNHISP 446
++ G S++++P
Sbjct: 404 KGDIQVSDGCSDYVAP 419
>TIGR_CMR|SPO_2509 [details] [associations]
symbol:SPO_2509 "exodeoxyribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_167724.1 ProteinModelPortal:Q5LQI1 GeneID:3194499
KEGG:sil:SPO2509 PATRIC:23378419 OMA:KYPYKLA ProtClustDB:CLSK933885
Uniprot:Q5LQI1
Length = 268
Score = 86 (35.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+N+NG++ R +L LDS D+ QE K + ++ GY
Sbjct: 1 MKIATFNINGIKARAE---ALPAWLDSAQPDVALLQEIKSVDESFPREMFEERGYN---- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP 93
G+ G++GVA ++ P LP
Sbjct: 54 ---VETHGQKGFNGVAILSKL--PLEDVSRGLP 81
Score = 80 (33.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 34/109 (31%), Positives = 50/109 (45%)
Query: 157 RIQFKLQFFHK---RWEFLLCQGRRIFVVGDLNIAPAAID--RCDAGPDFA--KNEFRIW 209
+ +KL++ + R L+ + GD NI P A D R +A + A + E R
Sbjct: 128 KYDYKLRWMERLQARATELMAAEEPALMAGDYNIIPQAEDAKRPEAWREDALFRPESRAA 187
Query: 210 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 258
FR +L G F + FR++ + Y+ W GA N G RIDH L
Sbjct: 188 FRRIL-NLG--FTEAFRAR-VQGPGHYSFWDYQAGAWNRNDGIRIDHFL 232
>UNIPROTKB|F1N383 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0000405 "bubble DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 IPI:IPI00706576
UniGene:Bt.37835 OMA:TKDLICF GeneTree:ENSGT00510000048146
EMBL:DAAA02060028 Ensembl:ENSBTAT00000007661 Uniprot:F1N383
Length = 606
Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 447 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 498
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 499 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 558
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 559 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 617
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 618 KWA 620
+WA
Sbjct: 546 EWA 548
>UNIPROTKB|Q3MHN7 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0000405
"bubble DNA binding" evidence=ISS] [GO:0006284 "base-excision
repair" evidence=ISS] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 eggNOG:COG0266 SUPFAM:SSF81624
SUPFAM:SSF46946 EMBL:BC105168 IPI:IPI00706576 RefSeq:NP_001029662.1
UniGene:Bt.37835 ProteinModelPortal:Q3MHN7 STRING:Q3MHN7
PRIDE:Q3MHN7 GeneID:515343 KEGG:bta:515343 CTD:55247
HOGENOM:HOG000113754 HOVERGEN:HBG052594 InParanoid:Q3MHN7 KO:K10569
OrthoDB:EOG48GW30 NextBio:20871781 Uniprot:Q3MHN7
Length = 606
Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 447 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 498
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 499 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 558
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 559 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 617
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 618 KWA 620
+WA
Sbjct: 546 EWA 548
>RGD|1310562 [details] [associations]
symbol:Neil3 "nei endonuclease VIII-like 3 (E. coli)"
species:10116 "Rattus norvegicus" [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006284 "base-excision
repair" evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds"
evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISO] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 RGD:1310562
GO:GO:0005634 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946
OrthoDB:EOG48GW30 GeneTree:ENSGT00510000048146 IPI:IPI00358506
Ensembl:ENSRNOT00000015623 Uniprot:D3ZKJ8
Length = 607
Score = 127 (49.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 567 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 620
+ S P CK H PCV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 502 LHASRPQCKTHSRPCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 549
Score = 43 (20.2 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/103 (19%), Positives = 42/103 (40%)
Query: 455 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNK 514
K + +LG+ S ++F + + I + N N ++ T Q+ +S ++
Sbjct: 261 KIRVCRLGENSRMTYFCPHCQKENPQHVQICQQTANKNAEISWTPKGQDCFTDSVARKSE 320
Query: 515 IPVTDYSCSVHEL-HGVNSSVCSHDQDEKKGKRFLDKERNNVA 556
+SC V L + +++ C + L E N++A
Sbjct: 321 ---EQWSCMVCTLINKPSATACDACLTTRPVDSVLKNEENSIA 360
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 90 (36.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 45 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 101
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 102 WSAPSDK--EGYSGVGLLSR 119
Score = 63 (27.2 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 97 EEGFTG--LLETSGS-KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G LL K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 108 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 160
Query: 154 DTVRIQFKLQFFHKRWE 170
VR++++ +RW+
Sbjct: 161 GLVRLEYR-----QRWD 172
>ZFIN|ZDB-GENE-041114-18 [details] [associations]
symbol:neil3 "nei endonuclease VIII-like 3 (E.
coli)" species:7955 "Danio rerio" [GO:0016799 "hydrolase activity,
hydrolyzing N-glycosyl compounds" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF00641 Pfam:PF01149 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 SMART:SM00898
ZFIN:ZDB-GENE-041114-18 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0005622 GO:GO:0003906 GO:GO:0006289 SUPFAM:SSF81624
SUPFAM:SSF46946 GO:GO:0016799 GeneTree:ENSGT00510000048146
EMBL:CR853287 IPI:IPI00837209 Ensembl:ENSDART00000123343
ArrayExpress:F1Q570 Bgee:F1Q570 Uniprot:F1Q570
Length = 577
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 44/149 (29%), Positives = 63/149 (42%)
Query: 487 TSLNVN-NSVTDTSLSQEEVPESHH----HSN---KIP---VTDYSCSVHELHGVNSSVC 535
TSL+ +S + ++SQ PE+ H N K P V+ +E + S
Sbjct: 378 TSLSAKPDSPSSPAISQAHTPETMRGLSTHGNWQRKSPSNGVSGMQFKGNEPYK-RESPT 436
Query: 536 SHDQDEKKGKRFLDK-ERNNVALLEWRRIQQLMETSIPL---CKGHKEPCVARVVKKPGP 591
H Q K+ K N+ + R QQ + S+P CK H PC RVV K G
Sbjct: 437 DHSQPNKRMKTTNGTFSGGNIKHISSRGTQQSNDASLPTTPCCKSHHRPCTQRVVTKEGE 496
Query: 592 TFGRRFFVCARAEGPASNPEANCGYFKWA 620
GR+F+ C+ E C +F+WA
Sbjct: 497 NKGRQFYTCSLPR------ETQCNFFEWA 519
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 627 627 0.00091 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 54
No. of states in DFA: 624 (66 KB)
Total size of DFA: 376 KB (2184 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.49u 0.17s 60.66t Elapsed: 00:00:02
Total cpu time: 60.50u 0.17s 60.67t Elapsed: 00:00:02
Start: Mon May 20 19:44:57 2013 End: Mon May 20 19:44:59 2013