Query 006881
Match_columns 627
No_of_seqs 355 out of 2129
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 15:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 3.8E-52 8.3E-57 420.8 19.3 249 1-321 1-260 (261)
2 PRK13911 exodeoxyribonuclease 100.0 6.2E-50 1.3E-54 409.4 23.7 242 1-320 1-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 1E-41 2.2E-46 351.8 24.3 248 1-321 1-267 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 8.4E-40 1.8E-44 334.8 23.0 246 1-320 1-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 3.4E-37 7.4E-42 313.9 24.4 245 1-320 1-254 (255)
6 PRK05421 hypothetical protein; 99.8 5.7E-20 1.2E-24 189.9 21.0 212 1-322 44-261 (263)
7 KOG1294 Apurinic/apyrimidinic 99.8 9E-21 1.9E-25 199.6 12.8 251 1-321 64-334 (335)
8 KOG1294 Apurinic/apyrimidinic 99.8 2.1E-18 4.6E-23 181.7 12.3 179 122-351 5-188 (335)
9 PF03372 Exo_endo_phos: Endonu 99.7 1.8E-16 3.8E-21 156.6 13.8 78 4-82 1-83 (249)
10 COG3568 ElsH Metal-dependent h 99.7 1.2E-15 2.6E-20 155.1 16.9 231 1-323 10-258 (259)
11 KOG3873 Sphingomyelinase famil 99.7 1.4E-15 3.1E-20 157.5 14.7 249 1-324 9-294 (422)
12 PLN03144 Carbon catabolite rep 99.6 1.7E-14 3.8E-19 162.7 20.6 86 1-87 255-358 (606)
13 TIGR03395 sphingomy sphingomye 99.6 4.9E-14 1.1E-18 147.3 21.3 40 1-40 1-47 (283)
14 PTZ00297 pantothenate kinase; 99.6 1.1E-13 2.5E-18 170.0 24.2 262 1-323 11-315 (1452)
15 KOG2756 Predicted Mg2+-depende 99.5 5.2E-13 1.1E-17 133.7 13.4 195 2-260 101-309 (349)
16 PRK15251 cytolethal distending 99.4 8.9E-12 1.9E-16 127.9 18.4 149 1-191 25-199 (271)
17 PF06839 zf-GRF: GRF zinc fing 99.4 4.4E-13 9.5E-18 101.4 4.4 45 572-623 1-45 (45)
18 PF14529 Exo_endo_phos_2: Endo 99.3 7.5E-12 1.6E-16 112.4 10.9 96 140-264 1-99 (119)
19 KOG2338 Transcriptional effect 99.3 1.2E-10 2.7E-15 126.2 18.8 145 19-191 152-307 (495)
20 COG3021 Uncharacterized protei 99.3 2.3E-11 5E-16 126.0 11.8 144 2-191 90-237 (309)
21 smart00476 DNaseIc deoxyribonu 99.0 1.4E-08 3E-13 105.7 18.2 76 1-82 18-104 (276)
22 smart00128 IPPc Inositol polyp 98.9 1.6E-08 3.4E-13 107.3 14.0 60 127-190 125-195 (310)
23 COG5239 CCR4 mRNA deadenylase, 98.9 3.4E-08 7.4E-13 103.6 14.8 63 19-81 63-131 (378)
24 KOG0620 Glucose-repressible al 98.5 3E-07 6.6E-12 99.0 9.6 67 19-87 53-120 (361)
25 KOG0566 Inositol-1,4,5-triphos 97.8 0.00037 7.9E-09 81.1 16.1 47 138-188 673-726 (1080)
26 KOG1956 DNA topoisomerase III 97.4 5.9E-05 1.3E-09 84.2 2.1 40 572-620 719-758 (758)
27 COG2374 Predicted extracellula 97.0 0.012 2.6E-07 67.8 14.6 21 20-40 506-526 (798)
28 PLN03191 Type I inositol-1,4,5 95.6 0.16 3.5E-06 58.0 13.1 17 308-324 577-593 (621)
29 KOG4399 C2HC-type Zn-finger pr 94.2 0.028 6.1E-07 57.0 2.3 50 569-625 11-60 (325)
30 COG5411 Phosphatidylinositol 5 88.6 0.86 1.9E-05 50.1 6.1 16 308-323 312-327 (460)
31 PF01396 zf-C4_Topoisom: Topoi 81.3 2.1 4.6E-05 31.3 3.4 36 573-622 3-38 (39)
32 PLN03191 Type I inositol-1,4,5 60.8 6.6 0.00014 45.3 2.9 35 3-39 112-149 (621)
33 PF06373 CART: Cocaine and amp 56.1 3.7 7.9E-05 33.9 -0.1 43 558-618 27-69 (73)
34 PTZ00312 inositol-1,4,5-tripho 55.3 27 0.00059 37.0 6.0 53 138-190 80-142 (356)
35 PF09507 CDC27: DNA polymerase 45.5 7.5 0.00016 42.8 0.3 15 459-473 416-430 (430)
36 PF04606 Ogr_Delta: Ogr/Delta- 40.9 23 0.00049 26.9 2.2 31 573-603 1-31 (47)
37 PF05325 DUF730: Protein of un 27.5 74 0.0016 28.0 3.4 44 571-620 20-65 (122)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-52 Score=420.82 Aligned_cols=249 Identities=37% Similarity=0.657 Sum_probs=213.2
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||||||.++++ ++++|.+.+||||||||||...+.++...+...||+.++.. |.+||+|||||+|
T Consensus 1 mkI~SwNVNgiRar~~~---~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~------gqKgysGVailsr 71 (261)
T COG0708 1 MKIASWNVNGLRARLKK---LLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNH------GQKGYSGVAILSK 71 (261)
T ss_pred CeeEEEehhhHHHHHHH---HHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEec------CcCCcceEEEEEc
Confidence 89999999999999997 99999999999999999999999998877778999777663 5589999999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHHH
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (627)
.+ |..+..|+.+. ...|.|||+|.+++..|.|+|+|+|++.....+|+.+
T Consensus 72 ~~----------~~~v~~g~~~~--------------------~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~y 121 (261)
T COG0708 72 KP----------PDDVRRGFPGE--------------------EEDDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFDY 121 (261)
T ss_pred cC----------chhhhcCCCCC--------------------ccccccCcEEEEEECCEEEEEEEcCCCCCCCCcchHH
Confidence 83 44556666421 1257899999999999999999999999756889999
Q ss_pred HHHHH---HHHHHHHHhcCCcEEEecccCCCCCcccccCCC--------CCCCchHHHHHHHHHHHHcCCcccccccccC
Q 006881 161 KLQFF---HKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 229 (627)
Q Consensus 161 k~~f~---~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~--------~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~h 229 (627)
|++|+ +..++.+...+.++|||||||++|.++|..+.. .+|.+.+ |+||+.++. .| |+|+||.+|
T Consensus 122 Kl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~ee-R~~~~~ll~-~G--~~D~~R~~~ 197 (261)
T COG0708 122 KLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEE-RAWFRRLLN-AG--FVDTFRLFH 197 (261)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHH-HHHHHHHHH-cc--hhhhhHhhC
Confidence 99999 445666778899999999999999999987662 4677766 999998874 44 999999999
Q ss_pred CCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCC
Q 006881 230 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 309 (627)
Q Consensus 230 P~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~ 309 (627)
|+... ||||+++.++++.|.|.||||||+|+.+.. ++++|.|+.+.+.|. .
T Consensus 198 p~~~~-YTwW~YR~~~~~~n~G~RID~~l~S~~L~~-------------~~~~a~I~~~~rg~e---------------~ 248 (261)
T COG0708 198 PEPEK-YTWWDYRANAARRNRGWRIDYILVSPALAD-------------RLKDAGIDREVRGWE---------------K 248 (261)
T ss_pred CCCCc-ccccccccchhhhcCceeEEEEEeCHHHHH-------------HHHhcCccHHHhcCC---------------C
Confidence 99876 999999999888889999999999998754 789999998854332 5
Q ss_pred CCCccceEEEEe
Q 006881 310 GSDHAPVYMCLG 321 (627)
Q Consensus 310 ~SDH~PV~~~l~ 321 (627)
.||||||+++|.
T Consensus 249 pSDHaPV~~e~~ 260 (261)
T COG0708 249 PSDHAPVWVELD 260 (261)
T ss_pred CCCcCcEEEEec
Confidence 599999999985
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=6.2e-50 Score=409.38 Aligned_cols=242 Identities=34% Similarity=0.626 Sum_probs=202.4
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||||||.+.++ .+.++|++++||||||||||++...+. ....||+.|+... +++||+|||||+|
T Consensus 1 mki~swNVNgir~~~~~--~~~~~l~~~~~DIiclQEtK~~~~~~~---~~~~gY~~~~~~~-----~~kgy~GVAi~~k 70 (250)
T PRK13911 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNT---FEFKGYFDFWNCA-----IKKGYSGVVTFTK 70 (250)
T ss_pred CEEEEEEeCChhHhhhh--hHHHHHHhcCCCEEEEEeecccccccc---cccCCceEEEEec-----ccCccceEEEEEc
Confidence 89999999999998864 499999999999999999999887763 3467999888543 5679999999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHHH
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (627)
.+ |+.+..|+. . ...|.|||+|.++++.|+|+|||+|+++. ..+|++|
T Consensus 71 ~~----------~~~v~~~~~-------------~--------~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~-~~~r~~~ 118 (250)
T PRK13911 71 KE----------PLSVSYGIN-------------I--------EEHDKEGRVITCEFESFYLVNVYTPNSQQ-ALSRLSY 118 (250)
T ss_pred CC----------chheEEcCC-------------C--------CcccccCCEEEEEECCEEEEEEEecCCCC-CCcchHH
Confidence 83 555555541 0 13578999999999999999999999985 4679999
Q ss_pred HHHHHHHHHHHHH--hcCCcEEEecccCCCCCcccccCC-----CCCCCchHHHHHHHHHHHHcCCcccccccccCCCCC
Q 006881 161 KLQFFHKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 233 (627)
Q Consensus 161 k~~f~~~~~~~L~--~~g~~VII~GDFN~~~~~iD~~~~-----~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~ 233 (627)
|++|+..+.+.|. ..++++|||||||++|.++|++++ ..+|.+.+ |+||+.+|. .| |+|+||.+||+..
T Consensus 119 K~~~~~~~~~~l~~l~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~e-r~~f~~~l~-~g--l~D~~R~~~p~~~ 194 (250)
T PRK13911 119 RMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEE-RGKFSELLN-AG--FIDTFRYFYPNKE 194 (250)
T ss_pred HHHHHHHHHHHHHhcccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHH-HHHHHHHHh-cC--CeehhhhhCCCCC
Confidence 9999855554443 456899999999999999999863 35777766 999999886 34 9999999999977
Q ss_pred CccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCc
Q 006881 234 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDH 313 (627)
Q Consensus 234 ~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH 313 (627)
+.||||+++.+++..|+|.||||||+++.+.. .+.++.|... ..+|||
T Consensus 195 ~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~-------------~~~~~~i~~~-------------------~~~SDH 242 (250)
T PRK13911 195 KAYTWWSYMQQARDKNIGWRIDYFLCSNPLKT-------------RLKDALIYKD-------------------ILGSDH 242 (250)
T ss_pred CCCccCCCcCCccccCCcceEEEEEEChHHhh-------------hEEEEEECCC-------------------CCCCCc
Confidence 78999999999999999999999999998754 6788888653 478999
Q ss_pred cceEEEE
Q 006881 314 APVYMCL 320 (627)
Q Consensus 314 ~PV~~~l 320 (627)
|||+++|
T Consensus 243 ~Pv~~~~ 249 (250)
T PRK13911 243 CPVGLEL 249 (250)
T ss_pred ccEEEEe
Confidence 9999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=1e-41 Score=351.81 Aligned_cols=248 Identities=29% Similarity=0.520 Sum_probs=188.7
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||||++.+..+ +.++|++++|||||||||+.....+....+...||..+|. +..+|+|||||+|
T Consensus 1 mri~T~Nv~g~~~~~~~---i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~-------~~~~~~GvailSr 70 (268)
T PRK11756 1 MKFVSFNINGLRARPHQ---LEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYH-------GQKGHYGVALLSK 70 (268)
T ss_pred CEEEEEEcCCHHHHHHH---HHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEe-------CCCCCCEEEEEEC
Confidence 89999999999876654 9999999999999999999877665444556689987764 2357789999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEe----CcEEEEEEecCCCCCC-ch
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSE-DT 155 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~----~~~~LinVY~P~~~~~-~~ 155 (627)
.+ ++....++.+ ...+.+||++.+.. +.|.++|+|+|++... ..
T Consensus 71 ~p----------~~~~~~~~~~---------------------~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~ 119 (268)
T PRK11756 71 QT----------PIAVRKGFPT---------------------DDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHP 119 (268)
T ss_pred CC----------hHHeEECCCC---------------------ccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcc
Confidence 83 2233332210 01245789988764 4699999999998652 23
Q ss_pred HHHHHHHHHHHHHHHH---HHhcCCcEEEecccCCCCCcccccCC-----------CCCCCchHHHHHHHHHHHHcCCcc
Q 006881 156 VRIQFKLQFFHKRWEF---LLCQGRRIFVVGDLNIAPAAIDRCDA-----------GPDFAKNEFRIWFRSMLVESGGSF 221 (627)
Q Consensus 156 eR~~~k~~f~~~~~~~---L~~~g~~VII~GDFN~~~~~iD~~~~-----------~~~f~~~~~r~~l~~lL~~~g~~L 221 (627)
++..+|++|++.+... ++..+.||||+||||+++..+|.+.+ ..+|.+.+ |.|++.++. .| |
T Consensus 120 ~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~e-r~~~~~l~~-~~--l 195 (268)
T PRK11756 120 TKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWLDRLMD-WG--L 195 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHH-HHHHHHHHh-CC--c
Confidence 5666777777544433 34567899999999999999998632 23465555 889987763 44 9
Q ss_pred cccccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcC
Q 006881 222 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 301 (627)
Q Consensus 222 ~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~ 301 (627)
+|+||.+||...+.||||+++.++++.|+|.||||||+++.+.. +|++|.|..+.+.+
T Consensus 196 ~D~~R~~~p~~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~~-------------~v~~~~i~~~~~~~--------- 253 (268)
T PRK11756 196 VDTFRQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAE-------------RCVETGIDYDIRGM--------- 253 (268)
T ss_pred EeehhhhCCCCCCcccCcCCcccccccCCceEEEEEEeCHHHHh-------------hheEeEEeHHHhCC---------
Confidence 99999999985557999999999988899999999999987643 68999998763211
Q ss_pred CCCCCCCCCCCccceEEEEe
Q 006881 302 GGMSTRLEGSDHAPVYMCLG 321 (627)
Q Consensus 302 ~~~~~~~~~SDH~PV~~~l~ 321 (627)
...||||||+++|.
T Consensus 254 ------~~~SDH~PV~~~~~ 267 (268)
T PRK11756 254 ------EKPSDHAPIWATFK 267 (268)
T ss_pred ------CCCCCcccEEEEEe
Confidence 25799999999985
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=8.4e-40 Score=334.84 Aligned_cols=246 Identities=34% Similarity=0.630 Sum_probs=192.6
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||+|++....+ +.++|+.++|||||||||+.....+...++...||..+++.. .|+.|||||+|
T Consensus 1 mri~t~Ni~g~~~~~~~---~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~-------~g~~Gvailsr 70 (254)
T TIGR00195 1 MKIISWNVNGLRARLHK---GLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ-------KGYSGVAIFSK 70 (254)
T ss_pred CEEEEEEcCcHHHhHHH---HHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC-------CCcceEEEEEc
Confidence 89999999999877665 899999999999999999987655555555668998777632 46789999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHHH
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (627)
. .|+.+..++.. ...|.+||++.+++..|.|+|+|+|+++....++..+
T Consensus 71 ~----------~~~~~~~~~~~---------------------~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~~~~~~~~ 119 (254)
T TIGR00195 71 E----------EPLSVRRGFGV---------------------EEEDAEGRIIMAEFDSFLVINGYFPNGSRDDSEKLPY 119 (254)
T ss_pred C----------CcceEEECCCC---------------------cccccCCCEEEEEECCEEEEEEEccCCCCCCCccHHH
Confidence 6 25554443310 1246799999999988999999999976656678888
Q ss_pred HHHHHHHHHHHH---HhcCCcEEEecccCCCCCcccccCC-----CCCCCchHHHHHHHHHHHHcCCcccccccccCCCC
Q 006881 161 KLQFFHKRWEFL---LCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 232 (627)
Q Consensus 161 k~~f~~~~~~~L---~~~g~~VII~GDFN~~~~~iD~~~~-----~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 232 (627)
|..|+..+.+.+ ...+.+|||+||||+++..+|+.+. ..+|.+.+ |.+|+.++. .+ |+|+||.+||..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e-~~~~~~l~~-~~--l~D~~r~~~~~~ 195 (254)
T TIGR00195 120 KLQWLEALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEE-REWLDRLLE-AG--LVDTFRKFNPDE 195 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChhhccChhhcCCCcCcChHH-HHHHHHHHH-cC--CEeeecccCCCC
Confidence 888885544443 3457899999999999999888653 24566655 788988874 44 999999999984
Q ss_pred CCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCC
Q 006881 233 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 312 (627)
Q Consensus 233 ~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SD 312 (627)
+.||||+.+.+++..|+|.||||||+++.+.. .|.+|.|....+. ....||
T Consensus 196 -~~~T~~~~~~~~~~~~~g~RID~i~~s~~~~~-------------~v~~~~i~~~~~~---------------~~~~SD 246 (254)
T TIGR00195 196 -GAYSWWDYRTKARDRNRGWRIDYFLVSEPLKE-------------RCVDCGIDYDIRG---------------SEKPSD 246 (254)
T ss_pred -CCCcccCCcCCccccCCceEEEEEEECHHHHh-------------hhhEEEEcHHHhc---------------CCCCCC
Confidence 46999999988888899999999999988643 6889999764211 025799
Q ss_pred ccceEEEE
Q 006881 313 HAPVYMCL 320 (627)
Q Consensus 313 H~PV~~~l 320 (627)
|+||.++|
T Consensus 247 H~Pv~~~~ 254 (254)
T TIGR00195 247 HCPVVLEF 254 (254)
T ss_pred cccEEEeC
Confidence 99999875
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.4e-37 Score=313.92 Aligned_cols=245 Identities=36% Similarity=0.664 Sum_probs=187.1
Q ss_pred CEEEEEeccCcchhhhhhhHH-HHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEE
Q 006881 1 MKIVTYNVNGLRQRVSQFGSL-RKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l-~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIls 79 (627)
|||+||||||++...++ + .++|..++|||||||||+.....+...++...||..+|... ...|++|||||+
T Consensus 1 lri~t~Nv~g~~~~~~~---~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~G~ails 72 (255)
T TIGR00633 1 MKIISWNVNGLRARLHK---LFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHGA-----KSKGYSGVAILS 72 (255)
T ss_pred CEEEEEecccHHHHhhc---cHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEeec-----ccCCcceEEEEE
Confidence 89999999999987775 5 99999999999999999986544433344567898877643 113667999999
Q ss_pred eeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHH
Q 006881 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (627)
Q Consensus 80 R~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~ 159 (627)
|.+ +..+..++. ....|.+||++.++++.++|+++|+|+.+....++..
T Consensus 73 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~~~~~ 121 (255)
T TIGR00633 73 KVE----------PLDVRYGFG---------------------GEEHDEEGRVITAEFDGFTVVNVYVPNGGSRGLERLE 121 (255)
T ss_pred cCC----------cceEEECCC---------------------CCcccCCCcEEEEEECCEEEEEEEccCCCCCCchhHH
Confidence 973 222333221 0235678999999889999999999998855567778
Q ss_pred HHHHHHHHHHHHH---HhcCCcEEEecccCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCcccccccccCCC
Q 006881 160 FKLQFFHKRWEFL---LCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 231 (627)
Q Consensus 160 ~k~~f~~~~~~~L---~~~g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 231 (627)
+|+.|+..+.+.+ +..+.++||+||||+++..+|+.+.. .++...+ +.+|+.++. .| |+|+||..+|.
T Consensus 122 ~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--l~D~~~~~~~~ 197 (255)
T TIGR00633 122 YKLQFWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEE-REWFDELLE-AG--LVDTFRHFNPD 197 (255)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChhhcCCCCCcCHHH-HHHHHHHHH-cC--CEecchhhCCC
Confidence 8888875544433 34678999999999999888876432 2343333 678888775 54 99999999999
Q ss_pred CCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCC
Q 006881 232 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 311 (627)
Q Consensus 232 ~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~S 311 (627)
..+.||||+.+...+..+.+.||||||++..+.. .+.++.|... ..+|
T Consensus 198 ~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~i~~~-------------------~~~S 245 (255)
T TIGR00633 198 TEGAYTWWDYRSGARDRNRGWRIDYFLVSEPLAE-------------RVVDSYIDSE-------------------IRGS 245 (255)
T ss_pred CCCcCcCcCCccCccccCCceEEEEEEECHHHHh-------------hhcEeEECCC-------------------CCCC
Confidence 7667999999877777789999999999987533 5678888643 3579
Q ss_pred CccceEEEE
Q 006881 312 DHAPVYMCL 320 (627)
Q Consensus 312 DH~PV~~~l 320 (627)
||+||.++|
T Consensus 246 DH~pv~~~~ 254 (255)
T TIGR00633 246 DHCPIVLEL 254 (255)
T ss_pred CcccEEEEE
Confidence 999999987
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.85 E-value=5.7e-20 Score=189.89 Aligned_cols=212 Identities=16% Similarity=0.172 Sum_probs=120.3
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||++.+..-.. ...+.| ..++||||||||+.... + ..++...+|...|.... ....|++|||||+|
T Consensus 44 lri~t~NI~~~~~~~~~--~~l~~l-~~~~DiI~LQEv~~~~~-~-~~~~~~~~~~~~~~~~~---~~~~~~~GvaiLSR 115 (263)
T PRK05421 44 LRLLVWNIYKQQRAGWL--SVLKNL-GKDADLVLLQEAQTTPE-L-VQFATANYLAADQAPAF---VLPQHPSGVMTLSK 115 (263)
T ss_pred eeEEEEEccccccccHH--HHHHHh-ccCCCEEEEEecccCcc-h-HHHhhcccchHHhcccc---ccCCCccceeEeee
Confidence 69999999988765221 244555 89999999999986442 2 12344455554343221 12346789999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEE-EE--e---CcEEEEEEecCCCCCCc
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD--H---GHFILFNVYGPRADSED 154 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~vi-v~--~---~~~~LinVY~P~~~~~~ 154 (627)
.+ +.....+.+. + ..-.++|.++ +. . +.+.|+|+|.++.....
T Consensus 116 ~p-----------i~~~~~~~~~-----------------~---~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~ 164 (263)
T PRK05421 116 AH-----------PVYCCPLRER-----------------E---PWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLGV 164 (263)
T ss_pred cc-----------cceeeccCCC-----------------C---ccccCcceeEEEEEEeCCCCEEEEEEECccccCcCh
Confidence 84 3211111000 0 0011334432 22 2 24899999997654322
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 006881 155 TVRIQFKLQFFHKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 234 (627)
Q Consensus 155 ~eR~~~k~~f~~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~ 234 (627)
..|. .-+..+.+.+.....|+||+||||+.... . ...+..++...+ +.|++ +.+..+
T Consensus 165 ~~r~----~q~~~l~~~~~~~~~p~Il~GDFN~~~~~-----------~---~~~l~~~~~~~~--l~~~~--~~~~~~- 221 (263)
T PRK05421 165 DVYS----KQLEPIGDQIAHHSGPVILAGDFNTWSRK-----------R---MNALKRFARELG--LKEVR--FTDDQR- 221 (263)
T ss_pred HHHH----HHHHHHHHHHHhCCCCEEEEcccccCccc-----------c---hHHHHHHHHHcC--CCccC--cCCccc-
Confidence 2232 11222233344456799999999963211 0 134556665554 55542 111111
Q ss_pred ccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCcc
Q 006881 235 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 314 (627)
Q Consensus 235 ~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~ 314 (627)
+ ..++.||||||++ ++ .+.++.+.. ..+|||+
T Consensus 222 -~-----------~~~~~~ID~I~~~-~~---------------~v~~~~v~~--------------------~~~SDH~ 253 (263)
T PRK05421 222 -R-----------RAFGRPLDFVFYR-GL---------------NVSKASVLV--------------------TRASDHN 253 (263)
T ss_pred -c-----------cccCCCcceEEEC-Cc---------------EEEEEEcCC--------------------CCCCCcc
Confidence 0 1125799999984 32 567777753 2789999
Q ss_pred ceEEEEee
Q 006881 315 PVYMCLGE 322 (627)
Q Consensus 315 PV~~~l~~ 322 (627)
||+++|..
T Consensus 254 Pv~a~l~l 261 (263)
T PRK05421 254 PLLVEFSL 261 (263)
T ss_pred CEEEEEEe
Confidence 99999975
No 7
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.84 E-value=9e-21 Score=199.61 Aligned_cols=251 Identities=26% Similarity=0.437 Sum_probs=188.2
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCC-cEEeeccccCCCCCCcceEEEEEE
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIls 79 (627)
+.|+.|||.|++...+. .-..+......|++|+|||+++-+..+...-...+| +.++..+ .++.||.|++.++
T Consensus 64 ~~i~~~~i~~~~~~~~~--~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~ 137 (335)
T KOG1294|consen 64 LNICPWDIAGLEACEKF--SGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLSCA----SKKDGYSGEIDYS 137 (335)
T ss_pred eecCchhhhhhhhhhcc--ccchhccccchhhhhhhhccceeccCcceecccCCcccceeecc----cccCCccceeeee
Confidence 36788999999877665 356778888999999999998754443333346789 6677765 3567899999999
Q ss_pred eeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHH
Q 006881 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (627)
Q Consensus 80 R~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~ 159 (627)
+. .|+.+..++.. ++ ...+..||+|++++..+.|+|.|+|+.... .....
T Consensus 138 ~~----------~p~~v~~~~~~------------~~-------s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~-~~~~~ 187 (335)
T KOG1294|consen 138 KF----------KPLKVHYGFGA------------MG-------SDHRPVGRVIIAEFEIFILINTYVPNIGGG-LVNLV 187 (335)
T ss_pred ec----------ccceeeecccc------------cC-------CccCccceEEEEeecceeeccccCcccccc-cchhh
Confidence 87 46666555421 00 236789999999999999999999998863 44445
Q ss_pred HHH-HHHHHHHHHHH---h----cCCcEEEecccCCCCCcccc----cC------CCCCCCchHHHHHH-HHHHHHcCCc
Q 006881 160 FKL-QFFHKRWEFLL---C----QGRRIFVVGDLNIAPAAIDR----CD------AGPDFAKNEFRIWF-RSMLVESGGS 220 (627)
Q Consensus 160 ~k~-~f~~~~~~~L~---~----~g~~VII~GDFN~~~~~iD~----~~------~~~~f~~~~~r~~l-~~lL~~~g~~ 220 (627)
++. ..+..+++..+ . ...+++++||+|+.|..||. .. ...+|.+.+ |.|| ..++. . +.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~-R~~~~~~~~~-~-~~ 264 (335)
T KOG1294|consen 188 YRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEE-RDSFFAELLE-K-GP 264 (335)
T ss_pred hhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccccCCcCCCCCCHHH-hhhHHHhhcc-C-Cc
Confidence 542 33333333332 1 12489999999999999984 11 135677766 8998 56553 3 36
Q ss_pred ccccccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCc
Q 006881 221 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 300 (627)
Q Consensus 221 L~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w 300 (627)
++|+||..|++....||+|.+..+.+.++-+.|+||++++..... .+.++.|..+.
T Consensus 265 ~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n-------------~~r~~~Ic~r~----------- 320 (335)
T KOG1294|consen 265 LIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPN-------------NGRRFYICSRP----------- 320 (335)
T ss_pred ceeehhhhcCCccccccchhhccccccCCCCCceeEEEecCcCCC-------------CCceeeeecCc-----------
Confidence 999999999999878999999999999999999999999998755 67888998751
Q ss_pred CCCCCCCCCCCCccceEEEEe
Q 006881 301 KGGMSTRLEGSDHAPVYMCLG 321 (627)
Q Consensus 301 ~~~~~~~~~~SDH~PV~~~l~ 321 (627)
+.+||||||++.|.
T Consensus 321 -------~~gsdh~pi~~~~~ 334 (335)
T KOG1294|consen 321 -------IHGSDHCPITLEFF 334 (335)
T ss_pred -------cCCCCCCCeeeeec
Confidence 58999999999874
No 8
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.76 E-value=2.1e-18 Score=181.71 Aligned_cols=179 Identities=33% Similarity=0.402 Sum_probs=123.8
Q ss_pred cccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHHHHHHHH---HHHHHHHHhcCCcEEEecccCCCCCcccccCCC
Q 006881 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---HKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAG 198 (627)
Q Consensus 122 ~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~~k~~f~---~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~ 198 (627)
+...+|.|||++++++..+++++||+|....+..++ ++.|+ ..+++.+...|.++|+ |+.+..+|....-
T Consensus 5 ~~~~~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~~~---~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~~ 77 (335)
T KOG1294|consen 5 EALELDSEGRCVIVDKEMFVLINVYCPRNSPEISKR---RLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEAC 77 (335)
T ss_pred hhhhhhccCCeeeeecccccccceeccccCCcchhh---hhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhhh
Confidence 445689999999999988999999999998766655 45555 7789999999999998 8888777655433
Q ss_pred CCCCchH-HHHHHHHHHHHcC-CcccccccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCccccccccccccc
Q 006881 199 PDFAKNE-FRIWFRSMLVESG-GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 276 (627)
Q Consensus 199 ~~f~~~~-~r~~l~~lL~~~g-~~L~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~ 276 (627)
..|...+ ...++..++-... ...+|..+..||+ .+.||+|.........+|+.++||+.+.+-.++
T Consensus 78 ~~~~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v~----------- 145 (335)
T KOG1294|consen 78 EKFSGDPEISSELRDLQCLLETKCTIDSGPCSHPT-EKGYTHSLLSCASKKDGYSGEIDYSKFKPLKVH----------- 145 (335)
T ss_pred hccccchhccccchhhhhhhhccceeccCcceecc-cCCcccceeecccccCCccceeeeeecccceee-----------
Confidence 3332111 0122222221111 1249999999999 556999999888888999999999999764321
Q ss_pred ccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccceEEEEeecCCCCCCCChhHHhhccccccchhHHHHH
Q 006881 277 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 351 (627)
Q Consensus 277 ~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~PV~~~l~~~~~~~~~~~p~l~~~~~~~~~g~~~~l~~ 351 (627)
|.. ..++|||+||...+.... ....|...|.|.+-+.++.+.-
T Consensus 146 -----------------------~~~----~~~~s~h~~~g~~i~~e~-----e~~~l~~~y~p~~~~~~~~~~~ 188 (335)
T KOG1294|consen 146 -----------------------YGF----GAMGSDHRPVGRVIIAEF-----EIFILINTYVPNIGGGLVNLVY 188 (335)
T ss_pred -----------------------ecc----cccCCccCccceEEEEee-----cceeeccccCcccccccchhhh
Confidence 111 125899999998775432 3356666777766665555443
No 9
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.69 E-value=1.8e-16 Score=156.60 Aligned_cols=78 Identities=27% Similarity=0.347 Sum_probs=43.0
Q ss_pred EEEeccCcchhh---hhhhHHHHHHhhcCCcEEEEecccch--hcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEE
Q 006881 4 VTYNVNGLRQRV---SQFGSLRKLLDSFDADIICFQETKLR--RQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (627)
Q Consensus 4 lTwNInGlr~~~---~~~~~l~~~L~~l~aDIIcLQETk~t--~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (627)
+||||+++..+. .+...|.++|..++||||||||++.. ...+...+....++..++...... .+..+..|++||
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i~ 79 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSP-PSDAGGYGVAIL 79 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSS-TTCSSSEEEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccc-cccccCceEEEE
Confidence 799999953322 11234999999999999999999843 222221121112222333222100 000034699999
Q ss_pred Eeec
Q 006881 79 CRVK 82 (627)
Q Consensus 79 sR~~ 82 (627)
+|.+
T Consensus 80 ~r~~ 83 (249)
T PF03372_consen 80 SRSP 83 (249)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 9984
No 10
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=155.11 Aligned_cols=231 Identities=21% Similarity=0.213 Sum_probs=126.1
Q ss_pred CEEEEEecc---Cc-chhhhhhhHHHHHHhhcCCcEEEEecccch----hcchhh---HHHhhcCCcEEeeccccCCCCC
Q 006881 1 MKIVTYNVN---GL-RQRVSQFGSLRKLLDSFDADIICFQETKLR----RQELKS---DLVMADGYESFFSCTRTSDKGR 69 (627)
Q Consensus 1 mrIlTwNIn---Gl-r~~~~~~~~l~~~L~~l~aDIIcLQETk~t----~~~l~~---~l~~~~GY~~~fs~~~~~~~gr 69 (627)
|+|+||||+ |. ..+... ..+.+.+.+.++|||||||+.-. ++.+.. .+....+.+.+++.........
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~-~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 88 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDL-PRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYG 88 (259)
T ss_pred eEEEEEEEEEccCccCceecH-HHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhcc
Confidence 589999995 33 222222 24999999999999999999641 222211 1223334333333221000122
Q ss_pred CcceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEE---EE---eCcEEEE
Q 006881 70 TGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI---TD---HGHFILF 143 (627)
Q Consensus 70 ~GysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~vi---v~---~~~~~Li 143 (627)
.+..|++|++|. |+..-+.+ .+.. ..+.|.|-++ ++ ++.|.|+
T Consensus 89 ~~~~GnaiLS~~-----------pi~~v~~~-------------~lp~-------~~~~~~Rgal~a~~~~~~g~~l~V~ 137 (259)
T COG3568 89 EGQHGNAILSRL-----------PIRDVENL-------------ALPD-------PTGLEPRGALLAEIELPGGKPLRVI 137 (259)
T ss_pred cceeeeEEEecC-----------cccchhhc-------------cCCC-------CCCCCCceeEEEEEEcCCCCEEEEE
Confidence 355799999976 33222111 0000 0123555433 22 2479999
Q ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHH-HHhcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCccc
Q 006881 144 NVYGPRADSEDTVRIQFKLQFFHKRWEF-LLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF 222 (627)
Q Consensus 144 nVY~P~~~~~~~eR~~~k~~f~~~~~~~-L~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~ 222 (627)
|+|.--. ..+|.. .++.+++. .+....|+|++||||..+..-++.-.. ...+. ....+.
T Consensus 138 ~~HL~l~---~~~R~~----Q~~~L~~~~~l~~~~p~vl~GDFN~~p~s~~yr~~~------------~~~~~-~~~~~~ 197 (259)
T COG3568 138 NAHLGLS---EESRLR----QAAALLALAGLPALNPTVLMGDFNNEPGSAEYRLAA------------RSPLN-AQAALT 197 (259)
T ss_pred EEecccc---HHHHHH----HHHHHHhhccCcccCceEEEccCCCCCCCccceecc------------CCchh-hccccc
Confidence 9998622 233322 22222221 223445999999999988765542111 01111 112356
Q ss_pred ccccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCC
Q 006881 223 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKG 302 (627)
Q Consensus 223 D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~ 302 (627)
+++.-.++-.. -||-+.. .-.||||||+++.+ .+..+.+..+. .|
T Consensus 198 ~~~~~a~~~~~--~tfps~~-------p~lriD~Ifvs~~~---------------~i~~~~v~~~~---------~a-- 242 (259)
T COG3568 198 GAFAPAVGRTI--RTFPSNT-------PLLRLDRIFVSKEL---------------AIRSVHVLTDR---------LA-- 242 (259)
T ss_pred cccCcccCccc--CCCCCCC-------ccccccEEEecCcc---------------cEEEEEeecCC---------Cc--
Confidence 66655554321 1332221 13589999999975 56777777651 12
Q ss_pred CCCCCCCCCCccceEEEEeec
Q 006881 303 GMSTRLEGSDHAPVYMCLGEV 323 (627)
Q Consensus 303 ~~~~~~~~SDH~PV~~~l~~~ 323 (627)
-..|||.||.++|...
T Consensus 243 -----~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 243 -----RVASDHLPLLAELRLK 258 (259)
T ss_pred -----cccccccceEEEEecC
Confidence 3789999999999753
No 11
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.65 E-value=1.4e-15 Score=157.48 Aligned_cols=249 Identities=20% Similarity=0.247 Sum_probs=135.0
Q ss_pred CEEEEEeccCcch----hhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhc--CCcEEeeccccCCCCCCcceE
Q 006881 1 MKIVTYNVNGLRQ----RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD--GYESFFSCTRTSDKGRTGYSG 74 (627)
Q Consensus 1 mrIlTwNInGlr~----~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~--GY~~~fs~~~~~~~gr~GysG 74 (627)
|||+|.|++|+.- +..|.+.+-+.+.....||+.|||+|...+-..-...... -|..||.. |--| +|
T Consensus 9 lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FHS------GimG-aG 81 (422)
T KOG3873|consen 9 LRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFHS------GIMG-AG 81 (422)
T ss_pred eeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhhc------cccc-Cc
Confidence 6899999999842 2223345888999999999999999865542210111222 33335542 3344 69
Q ss_pred EEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEE---EEeCc--EEEEEEec--
Q 006881 75 VATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI---TDHGH--FILFNVYG-- 147 (627)
Q Consensus 75 VAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~vi---v~~~~--~~LinVY~-- 147 (627)
+++|+|.+|--. +.....+.|.+.. .. .| ++| -|..|- +.++. +.+.|.|.
T Consensus 82 L~vfSK~PI~~t-------~~~~y~lNG~p~~---i~-rG-DWf----------~GK~Vgl~~l~~~g~~v~~yntHLHA 139 (422)
T KOG3873|consen 82 LCVFSKHPILET-------LFHRYSLNGYPHA---IH-RG-DWF----------GGKGVGLTVLLVGGRMVNLYNTHLHA 139 (422)
T ss_pred eEEeecCchhhh-------hhhccccCCccce---ee-ec-ccc----------ccceeEEEEEeeCCEEeeeeehhccc
Confidence 999999853100 0011122222110 00 00 111 122221 12222 33333333
Q ss_pred CCCCCCchHHHHHH--HHHH-HHHHHHHHhcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCccccc
Q 006881 148 PRADSEDTVRIQFK--LQFF-HKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 224 (627)
Q Consensus 148 P~~~~~~~eR~~~k--~~f~-~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~ 224 (627)
|-+...|. =+..| +.|. .+.++...+.+.-||++||||+-|.++-++ +|...| |+|+
T Consensus 140 eY~rq~D~-YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~-----------------ll~~a~--l~da 199 (422)
T KOG3873|consen 140 EYDRQNDE-YLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGHK-----------------LLLSAG--LVDA 199 (422)
T ss_pred cccccCch-hhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCcccccee-----------------eeeccc--hhhh
Confidence 33333222 11111 2444 555666667888999999999987765442 232344 8888
Q ss_pred ccccCCCC---------------CCccccCCCCC------CCccCCCcceEEEEEEeCCCcccccccccccccccceeee
Q 006881 225 FRSKHPER---------------REAYTCWPSNT------GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 283 (627)
Q Consensus 225 ~R~~hP~~---------------~~~yT~ws~~~------~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~ 283 (627)
|+..|++. +|. ||-+... ...+.-.+.||||||+++.... ....++
T Consensus 200 w~~~h~~q~e~~~~r~s~~~~l~~g~-tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~------------~~~a~~ 266 (422)
T KOG3873|consen 200 WTSLHLDQCESDSFRLSEDKELVEGN-TCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCN------------AKIAEV 266 (422)
T ss_pred HhhhchhhhcCcccccchhhhhhcCC-cccCcchhhhHHHhCCCCccceeeeEEEEcCcceE------------EEeeeE
Confidence 88888664 232 5543221 1112235889999999987422 133444
Q ss_pred EeecccccCCCCCCCCcCCCCCCCCCCCCccceEEEEeecC
Q 006881 284 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 324 (627)
Q Consensus 284 ~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~PV~~~l~~~~ 324 (627)
++... +. +..+...|||..+.++|.+.+
T Consensus 267 ~~t~~-rv------------P~~d~s~SDH~Al~a~L~I~~ 294 (422)
T KOG3873|consen 267 EFTEP-RV------------PGEDCSYSDHEALMATLKIFK 294 (422)
T ss_pred EecCC-CC------------CCCCCCccchhhheeEEEeec
Confidence 44331 11 123467899999999998765
No 12
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.62 E-value=1.7e-14 Score=162.70 Aligned_cols=86 Identities=23% Similarity=0.368 Sum_probs=52.3
Q ss_pred CEEEEEeccCc---------------chhhhhhhHHHHHHhhcCCcEEEEecccchh-cchhhHHHhhcCCcEEeecccc
Q 006881 1 MKIVTYNVNGL---------------RQRVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT 64 (627)
Q Consensus 1 mrIlTwNInGl---------------r~~~~~~~~l~~~L~~l~aDIIcLQETk~t~-~~l~~~l~~~~GY~~~fs~~~~ 64 (627)
+|||||||..- ...-.|+..|++.|..++||||||||+.... .++-...+...||..+|.....
T Consensus 255 frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~ 334 (606)
T PLN03144 255 FTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTT 334 (606)
T ss_pred EEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCC
Confidence 58999999521 1112233569999999999999999995322 1221223445689887753210
Q ss_pred C--CCCCCcceEEEEEEeeccCCCC
Q 006881 65 S--DKGRTGYSGVATFCRVKSPFSS 87 (627)
Q Consensus 65 ~--~~gr~GysGVAIlsR~~~~f~~ 87 (627)
. ..+..+.-|+|||+|.. .|++
T Consensus 335 ~~~~~~~~~~DGcAIFyr~d-rFeL 358 (606)
T PLN03144 335 EVYTGNTYVIDGCATFFRRD-RFSL 358 (606)
T ss_pred ccccccccCCceeEEEEECc-ceEE
Confidence 0 01112235999999984 4544
No 13
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.61 E-value=4.9e-14 Score=147.25 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=29.1
Q ss_pred CEEEEEeccCcch-------hhhhhhHHHHHHhhcCCcEEEEecccc
Q 006881 1 MKIVTYNVNGLRQ-------RVSQFGSLRKLLDSFDADIICFQETKL 40 (627)
Q Consensus 1 mrIlTwNInGlr~-------~~~~~~~l~~~L~~l~aDIIcLQETk~ 40 (627)
||||||||+.+.. .-.|...|...+...++|||||||+.-
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~ 47 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFD 47 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccc
Confidence 7999999975321 122333477778888999999999964
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=99.58 E-value=1.1e-13 Score=169.95 Aligned_cols=262 Identities=19% Similarity=0.223 Sum_probs=128.0
Q ss_pred CEEEEEeccCcch---hhhhhhHHHHHHhhc-CCcEEEEecccchh-------------cchhhHHHhhcCCcEEeeccc
Q 006881 1 MKIVTYNVNGLRQ---RVSQFGSLRKLLDSF-DADIICFQETKLRR-------------QELKSDLVMADGYESFFSCTR 63 (627)
Q Consensus 1 mrIlTwNInGlr~---~~~~~~~l~~~L~~l-~aDIIcLQETk~t~-------------~~l~~~l~~~~GY~~~fs~~~ 63 (627)
+||+||||+.+.. .... ..+..+|+.+ ++|||||||+.-.. ..+. +.+...||..|.....
T Consensus 11 l~VlTyNv~~~~~~~~~~~~-~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~-~~l~~~g~~~~~~~~~ 88 (1452)
T PTZ00297 11 ARVLSYNFNILPRGCGGFQH-ERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLV-DELKARGFHHYVISKQ 88 (1452)
T ss_pred eEEEEEEccccCCCcccccH-HHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHH-HHHHhcCCceeEeecC
Confidence 6899999985432 1122 3488999995 77999999996421 0111 2334568865432111
Q ss_pred cCCCC-----CCcceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcE---EEE
Q 006881 64 TSDKG-----RTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC---VIT 135 (627)
Q Consensus 64 ~~~~g-----r~GysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~---viv 135 (627)
+.-.. --+..|+||++|+ ||...+.+. +.. ....+ +.+.|- +.+
T Consensus 89 ~~~~~~~~~~~~~~~G~AILSR~-----------PI~~~~~~~-l~~-------~~~~~---------~~~~RG~L~a~I 140 (1452)
T PTZ00297 89 PSYLTMLRYNVCSDNGLIIASRF-----------PIWQRGSYT-FRN-------HERGE---------QSVRRGCLFAEV 140 (1452)
T ss_pred ccccccccCccccCCEEEEEECC-----------Chhhceeee-cCc-------ccccc---------cccccceEEEEE
Confidence 10000 0133499999999 443322211 000 00000 012221 122
Q ss_pred Ee-------CcEEEEEEecCCCCCC--chHHHHHHHHHHHHHHHHH-----HhcCCcEEEecccCCCCCcccccCCCCCC
Q 006881 136 DH-------GHFILFNVYGPRADSE--DTVRIQFKLQFFHKRWEFL-----LCQGRRIFVVGDLNIAPAAIDRCDAGPDF 201 (627)
Q Consensus 136 ~~-------~~~~LinVY~P~~~~~--~~eR~~~k~~f~~~~~~~L-----~~~g~~VII~GDFN~~~~~iD~~~~~~~f 201 (627)
+. +.+.++|+|.-..... ..+|...-.+|+...++.. ...+.|+||+||||+. .+|+.....
T Consensus 141 ~vp~~~g~~~~v~v~~tHL~~~~~~~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~--~~~~~~~~~-- 216 (1452)
T PTZ00297 141 EVPLAEGGSQRIVFFNVHLRQEDSLPSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN--GIDPHNGGH-- 216 (1452)
T ss_pred EccccCCCCceEEEEEeCCCCCCCcchHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCc--cccccccCC--
Confidence 22 3588999998654331 1222222223322212111 1245699999999964 122221100
Q ss_pred CchHHHHHHHHHHHHcCCcccccccccC---CCCCCccccCCCCC-CCccCCCcceEEEEEEeCCCcccccccccccccc
Q 006881 202 AKNEFRIWFRSMLVESGGSFFDVFRSKH---PERREAYTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 277 (627)
Q Consensus 202 ~~~~~r~~l~~lL~~~g~~L~D~~R~~h---P~~~~~yT~ws~~~-~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~ 277 (627)
...+....+.. |...+.++.|+++..+ |....+.+||.... -.+......||||||+++.+
T Consensus 217 ~s~e~~~ml~~-l~~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v-------------- 281 (1452)
T PTZ00297 217 PTKRFQELLNE-LQDLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCV-------------- 281 (1452)
T ss_pred ccHHHHHHHHH-hhhccccHhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCc--------------
Confidence 11122222322 2333334666654433 32222345554321 11112234699999998754
Q ss_pred cceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccceEEEEeec
Q 006881 278 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 323 (627)
Q Consensus 278 ~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~PV~~~l~~~ 323 (627)
.|.++.|...... .-..| ...|||+||.++|...
T Consensus 282 -~v~~~~v~~~~~~----~~~~~-------~~~SDH~Pv~a~l~l~ 315 (1452)
T PTZ00297 282 -QVEKPRIEKFVVS----SRRPY-------TYLSDHFGVSARLTLP 315 (1452)
T ss_pred -eEEEEEEeccccc----CCCCC-------CCcCcCccEEEEEEeC
Confidence 5667777443110 00123 4789999999999863
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.47 E-value=5.2e-13 Score=133.74 Aligned_cols=195 Identities=18% Similarity=0.269 Sum_probs=113.5
Q ss_pred EEEEEeccCc--chhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcC-CcEEeeccccCCCCCCcceEEEEE
Q 006881 2 KIVTYNVNGL--RQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG-YESFFSCTRTSDKGRTGYSGVATF 78 (627)
Q Consensus 2 rIlTwNInGl--r~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~G-Y~~~fs~~~~~~~gr~GysGVAIl 78 (627)
.+++|||.|| |+...|.+++..+|+.++||||||||+.-..-.. +-.... |..|++ ...+|+|.+++
T Consensus 101 S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~---~~K~~s~y~i~~~-------~~~~~~~~~~l 170 (349)
T KOG2756|consen 101 SLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSY---LKKRSSNYEIITG-------HEEGYFTAIML 170 (349)
T ss_pred EEEEeeccccccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhHH---HHHhhhheeEEEe-------ccceeeeeeee
Confidence 5789999987 4445555679999999999999999995321111 112223 333443 23577788888
Q ss_pred EeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEE-E----eCcEEEEEEecCCCCCC
Q 006881 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT-D----HGHFILFNVYGPRADSE 153 (627)
Q Consensus 79 sR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv-~----~~~~~LinVY~P~~~~~ 153 (627)
.+... . |...+.. ++. .-..+|-+.+ + ...+++.+.|.-.....
T Consensus 171 ~~s~~--~-------Vks~~~i--------~F~--------------NS~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h 219 (349)
T KOG2756|consen 171 KKSRV--K-------VKSQEII--------PFP--------------NSKMMRNLLIVEVNVSGNKLCLMTSHLESTRGH 219 (349)
T ss_pred ehhhc--C-------cccccee--------ccC--------------cchhhheeEEEEEeecCceEEEEeccccCCCCC
Confidence 76632 1 1111111 110 1124555432 2 23588888888444433
Q ss_pred chHHH-HHHHHH--HHHHHHHHHhcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccccC-
Q 006881 154 DTVRI-QFKLQF--FHKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH- 229 (627)
Q Consensus 154 ~~eR~-~~k~~f--~~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~h- 229 (627)
.++|. +|++.. .++.++.+ .+..||++||+|..-...-+|. .+ . +++|+|..+.
T Consensus 220 ~P~r~~qF~~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~ev~r~~-----lP-------------D--~~vDvWE~lg~ 277 (349)
T KOG2756|consen 220 APERMNQFKMVLKKMQEAIESL--PNATVIFGGDTNLRDREVTRCG-----LP-------------D--NIVDVWEFLGK 277 (349)
T ss_pred ChHHHHHHHHHHHHHHHHHHhC--CCceEEEcCcccchhhhcccCC-----CC-------------c--hHHHHHHHhCC
Confidence 45664 344222 12323322 6789999999996433322221 01 1 3889998887
Q ss_pred CCCCCccccCCCCCCCccCC--CcceEEEEEEe
Q 006881 230 PERREAYTCWPSNTGAEQFN--YGTRIDHILCA 260 (627)
Q Consensus 230 P~~~~~yT~ws~~~~a~~~n--~gsRIDyILvs 260 (627)
|..-+ |||-........++ ...|+|+||+.
T Consensus 278 p~~~~-FTwDT~~N~nl~G~~a~k~RfDRi~~r 309 (349)
T KOG2756|consen 278 PKHCQ-FTWDTQMNSNLGGTAACKLRFDRIFFR 309 (349)
T ss_pred CCcCc-eeeecccCcccchhHHHHHHHHHHhhh
Confidence 77665 99877665444433 23599999994
No 16
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.41 E-value=8.9e-12 Score=127.87 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=82.8
Q ss_pred CEEEEEeccCcchhhhhh--hHHHHHHhhc-CCcEEEEecccchhcc--------------hh-hHH-H-----hhcCCc
Q 006881 1 MKIVTYNVNGLRQRVSQF--GSLRKLLDSF-DADIICFQETKLRRQE--------------LK-SDL-V-----MADGYE 56 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~--~~l~~~L~~l-~aDIIcLQETk~t~~~--------------l~-~~l-~-----~~~GY~ 56 (627)
.++.|||.+|-......+ -.+..+|... ++||++|||+---+.. ++ .+. + ...++.
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~srpgm~ 104 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRSRPNQV 104 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEEccCccCCCce
Confidence 479999999984433222 1488888875 5999999998422111 01 000 0 123454
Q ss_pred EEeeccccCCCCCCcceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEE
Q 006881 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD 136 (627)
Q Consensus 57 ~~fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~ 136 (627)
.+|.... + .+ .|..|+||++|.+. .....+. + | ......++.++
T Consensus 105 YiY~~ai-D-~~-ggr~glAIlSr~~a-----------~~~~~l~--~----p----------------~~~~Rpilgi~ 148 (271)
T PRK15251 105 YIYYSRV-D-VG-ANRVNLAIVSRRRA-----------DEVIVLR--P----P----------------TVASRPIIGIR 148 (271)
T ss_pred EEEEecc-c-CC-CCceeEEEEecccc-----------cceEEec--C----C----------------CCcccceEEEE
Confidence 4444332 1 33 34569999999841 1111110 0 0 11233456677
Q ss_pred eCcEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHH-h-cCCcEEEecccCCCCCc
Q 006881 137 HGHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLL-C-QGRRIFVVGDLNIAPAA 191 (627)
Q Consensus 137 ~~~~~LinVY~P~~~~~~~eR~~~k~~f~~~~~~~L~-~-~g~~VII~GDFN~~~~~ 191 (627)
.+.++++++|+.+.+. .++.+ .+....+... . ...++||+||||..|+.
T Consensus 149 i~~~~ffstH~~a~~~--~da~a----iV~~I~~~f~~~~~~~pw~I~GDFNr~P~s 199 (271)
T PRK15251 149 IGNDVFFSIHALANGG--TDAGA----IVRAVHNFFRPNMRHINWMIAGDFNRSPDR 199 (271)
T ss_pred ecCeEEEEeeecCCCC--ccHHH----HHHHHHHHHhhccCCCCEEEeccCCCCCcc
Confidence 7789999999988843 22321 1111111111 1 23689999999987765
No 17
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This presumed zinc-binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to IPR000380 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=99.37 E-value=4.4e-13 Score=101.37 Aligned_cols=45 Identities=40% Similarity=0.897 Sum_probs=41.1
Q ss_pred CCCCCCCccccceeecCCCCCCCceeeeCCCCCCCCCCCCCCCCceeecCCC
Q 006881 572 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 623 (627)
Q Consensus 572 p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~~ 623 (627)
|.|. ||++|++++++|.|+|.||.||.|++... .+|+||+|+|+.
T Consensus 1 p~C~-Cg~~~~~~~s~k~~~N~GR~Fy~C~~~~~------~~C~fF~W~De~ 45 (45)
T PF06839_consen 1 PKCP-CGEPAVRRTSKKTGPNPGRRFYKCPNYKD------KGCNFFQWEDEM 45 (45)
T ss_pred CCCC-CCCEeEEEEEeCCCCCCCCcceECCCCCC------CCcCCEEeccCc
Confidence 7899 99999999999999999999999998733 789999999974
No 18
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.34 E-value=7.5e-12 Score=112.45 Aligned_cols=96 Identities=26% Similarity=0.372 Sum_probs=50.5
Q ss_pred EEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh-cCC-cEEEecccCCCCCcccccCCCCCCCch-HHHHHHHHHHHH
Q 006881 140 FILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLLC-QGR-RIFVVGDLNIAPAAIDRCDAGPDFAKN-EFRIWFRSMLVE 216 (627)
Q Consensus 140 ~~LinVY~P~~~~~~~eR~~~k~~f~~~~~~~L~~-~g~-~VII~GDFN~~~~~iD~~~~~~~f~~~-~~r~~l~~lL~~ 216 (627)
|+|+|||+|+... +..|+.. +..++. ... ++||+||||..+..++.. ... ...+.|.+++.+
T Consensus 1 i~i~~vY~pp~~~--------~~~~~~~-l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~------~~~~~~~~~l~~~~~~ 65 (119)
T PF14529_consen 1 ITIISVYAPPSSE--------REEFFDQ-LRQLLKNLPPAPIIIGGDFNAHHPNWDSS------NTNSRRGEQLLDWLDS 65 (119)
T ss_dssp EEEEEEE--TTS---------CHHHHHH-HHHHHHCCTTSSEEEEEE-----GGGT-S------CHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcc--------HHHHHHH-HHHHHHhCCCCCEEEEeECCCCchhhhhc------cccchhHHHHHHHhhh
Confidence 5799999999871 1134433 333433 222 999999999976665432 111 224556677777
Q ss_pred cCCcccccccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCc
Q 006881 217 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 264 (627)
Q Consensus 217 ~g~~L~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~ 264 (627)
.+ |.++ ++... .|||++... ++|||+||++..+.
T Consensus 66 ~~--l~~~----~~~~~-~~T~~~~~~-------~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 66 HN--LVDL----NPPGR-PPTFISNSH-------GSRIDLILTSDNLL 99 (119)
T ss_dssp CT--EEE-------TT----SEEECCC-------EE--EEEEEECCGC
T ss_pred ce--eeee----ecCCC-CCcccCCCC-------CceEEEEEECChHH
Confidence 76 7777 33323 389988653 68999999999864
No 19
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.29 E-value=1.2e-10 Score=126.17 Aligned_cols=145 Identities=23% Similarity=0.292 Sum_probs=86.5
Q ss_pred hHHHHHHhhcCCcEEEEecccchhcc-hhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEeeccCCCCcccccceeee
Q 006881 19 GSLRKLLDSFDADIICFQETKLRRQE-LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAE 97 (627)
Q Consensus 19 ~~l~~~L~~l~aDIIcLQETk~t~~~-l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~ae 97 (627)
..|+..|...+||||||||+...... +........||..+|-.. .+ .+..||||+++.. .|++... .+|..-
T Consensus 152 ~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~r~----t~-~KthG~ai~w~~~-~F~lv~~-~~l~y~ 224 (495)
T KOG2338|consen 152 QNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRR----TG-TKTHGVAILWHSA-KFKLVNH-SELNYF 224 (495)
T ss_pred HHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEEec----cC-CCCceEEEEEecc-cceeccc-chhhcc
Confidence 46999999999999999999754322 223345668999877643 11 2235999999973 5554210 111100
Q ss_pred ecccccccccccccccCccccccccccccCCCCcEEEEEe-------CcEEEEEEecCCCCCCchHHHHHHHHHHHHHHH
Q 006881 98 EGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH-------GHFILFNVYGPRADSEDTVRIQFKLQFFHKRWE 170 (627)
Q Consensus 98 egltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~-------~~~~LinVY~P~~~~~~~eR~~~k~~f~~~~~~ 170 (627)
.. -..+...|.-|-+|.+++ +.+.|.|.|.=.......+|+..-...+++ ++
T Consensus 225 ~~--------------------~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~-~~ 283 (495)
T KOG2338|consen 225 DS--------------------GSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAE-LE 283 (495)
T ss_pred cc--------------------cchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHH-HH
Confidence 00 011334455566666654 258888888855444445665443333322 33
Q ss_pred HHHh---cCCcEEEecccCCCCCc
Q 006881 171 FLLC---QGRRIFVVGDLNIAPAA 191 (627)
Q Consensus 171 ~L~~---~g~~VII~GDFN~~~~~ 191 (627)
++.+ ..-|+|+|||||+.++.
T Consensus 284 ~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 284 KMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred HHHhhcccCCCeEEecCCCCCCCC
Confidence 3332 35699999999998753
No 20
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=2.3e-11 Score=126.04 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=82.3
Q ss_pred EEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEee
Q 006881 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81 (627)
Q Consensus 2 rIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR~ 81 (627)
++++.|++.-+....+ ++..+...++|+|.+||+..-..... .+....|..|..+. ++ .|..|+++++|.
T Consensus 90 ~~l~~N~r~~n~~~~k---~Lsl~~~~~~D~v~~~E~~~~~~~~~--~~l~~~yP~~~~~~----~~-~~~~~~a~~sr~ 159 (309)
T COG3021 90 WNLQKNVRFDNASVAK---LLSLIQQLDADAVTTPEGVQLWTAKV--GALAAQYPAFILCQ----HP-TGVFTLAILSRR 159 (309)
T ss_pred hhhhhhccccCcCHHH---HHHHHhhhCcchhhhHHHHHHhHhHH--HHHHHhCCceeecC----CC-CCeeeeeecccc
Confidence 5677787666555543 88888888899999999964322221 13455666544432 22 255689999987
Q ss_pred ccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEE----EeCcEEEEEEecCCCCCCchHH
Q 006881 82 KSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT----DHGHFILFNVYGPRADSEDTVR 157 (627)
Q Consensus 82 ~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv----~~~~~~LinVY~P~~~~~~~eR 157 (627)
. ++|.. ++-+. .....++.+.. +...++++++|.-+......
T Consensus 160 ~--------~~~~~--~~e~~----------------------~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~-- 205 (309)
T COG3021 160 P--------CCPLT--EAEPW----------------------LRLPKSALATAYPLPDGTELTVVALHAVNFPVGTD-- 205 (309)
T ss_pred c--------ccccc--ccCcc----------------------ccCCccceeEEEEcCCCCEEEEEeeccccccCCcc--
Confidence 2 12221 11110 11223333332 22457788888764332211
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEecccCCCCCc
Q 006881 158 IQFKLQFFHKRWEFLLCQGRRIFVVGDLNIAPAA 191 (627)
Q Consensus 158 ~~~k~~f~~~~~~~L~~~g~~VII~GDFN~~~~~ 191 (627)
.++ .-+.++.+.+....++||++||||+.+..
T Consensus 206 -~~~-~ql~~l~~~i~~~~gpvIlaGDfNa~pWS 237 (309)
T COG3021 206 -PQR-AQLLELGDQIAGHSGPVILAGDFNAPPWS 237 (309)
T ss_pred -HHH-HHHHHHHHHHHcCCCCeEEeecCCCcchh
Confidence 222 23334455666677999999999987643
No 21
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.01 E-value=1.4e-08 Score=105.71 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=43.5
Q ss_pred CEEEEEeccCcchhh----hhhhHHHHHHhhcCCcEEEEecccchhc-chhhHH---H--hhcCCcEEeeccccCCCCCC
Q 006881 1 MKIVTYNVNGLRQRV----SQFGSLRKLLDSFDADIICFQETKLRRQ-ELKSDL---V--MADGYESFFSCTRTSDKGRT 70 (627)
Q Consensus 1 mrIlTwNInGlr~~~----~~~~~l~~~L~~l~aDIIcLQETk~t~~-~l~~~l---~--~~~GY~~~fs~~~~~~~gr~ 70 (627)
|||+||||+...... .+...|.++|. ++|||++||+.-... .+..-+ . ...+|..+.+.. .|+.
T Consensus 18 l~I~SfNIr~fgd~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~r----~gr~ 91 (276)
T smart00476 18 LRICAFNIQSFGDSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEP----LGRN 91 (276)
T ss_pred EEEEEEECcccCCccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceEEecCC----CCCC
Confidence 699999998443211 11234667776 889999999964322 222111 1 113677666542 2333
Q ss_pred cc-eEEEEEEeec
Q 006881 71 GY-SGVATFCRVK 82 (627)
Q Consensus 71 Gy-sGVAIlsR~~ 82 (627)
+| --.++++|..
T Consensus 92 ~~~E~~a~~Yr~d 104 (276)
T smart00476 92 SYKEQYLFLYRSD 104 (276)
T ss_pred CCCEEEEEEEecc
Confidence 32 2478888874
No 22
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.90 E-value=1.6e-08 Score=107.26 Aligned_cols=60 Identities=20% Similarity=0.137 Sum_probs=37.3
Q ss_pred CCCCcEEEEEeC--cEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHH---------hcCCcEEEecccCCCCC
Q 006881 127 DSEGRCVITDHG--HFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLL---------CQGRRIFVVGDLNIAPA 190 (627)
Q Consensus 127 D~EGR~viv~~~--~~~LinVY~P~~~~~~~eR~~~k~~f~~~~~~~L~---------~~g~~VII~GDFN~~~~ 190 (627)
+..|.++.+... .|.++|+|.++....-..| ..-+...++.+. ....++|++||||--.+
T Consensus 125 nKG~v~i~~~~~~~~~~fv~~HL~a~~~~~~~R----~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 125 NKGAVAVRFKLSDTSFCFVNSHLAAGASNVEQR----NQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred cCceEEEEEEEcCcEEEEEeeccccccchhhhh----HHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 456677766654 4999999999976532223 222323333331 23578999999997543
No 23
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=98.87 E-value=3.4e-08 Score=103.57 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=42.8
Q ss_pred hHHHHHHhhcCCcEEEEecccchh-cchhhHHHhhcCCcEEeecccc--CC---CCCCcceEEEEEEee
Q 006881 19 GSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT--SD---KGRTGYSGVATFCRV 81 (627)
Q Consensus 19 ~~l~~~L~~l~aDIIcLQETk~t~-~~l~~~l~~~~GY~~~fs~~~~--~~---~gr~GysGVAIlsR~ 81 (627)
+-|++.|...++||+||||+.... ..+-.+.+...||+..|..... ++ .....--|++|+.+.
T Consensus 63 ~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k~~~m~~~d~t~~dGc~if~k~ 131 (378)
T COG5239 63 RLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERKVKWMIDYDTTKVDGCAIFLKR 131 (378)
T ss_pred HHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCCCcccccccccccccceEEEEEEe
Confidence 468888999999999999997643 3354556677899986654321 10 011123499999987
No 24
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=98.52 E-value=3e-07 Score=99.01 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=42.1
Q ss_pred hHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeecc-ccCCCCCCcceEEEEEEeeccCCCC
Q 006881 19 GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT-RTSDKGRTGYSGVATFCRVKSPFSS 87 (627)
Q Consensus 19 ~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~-~~~~~gr~GysGVAIlsR~~~~f~~ 87 (627)
..+.+.|...+||||||||+ -....+....+...||.+.|..- +.......+-.|+|||.|.. .|++
T Consensus 53 ~~~~~ei~~~~ad~icLqev-~~~~~~~~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s-~f~l 120 (361)
T KOG0620|consen 53 QLLLEEILNYNADILCLQEV-DRYHDFFSPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKPS-LFQL 120 (361)
T ss_pred HHHHHHHhCCCcceeecchh-hHHHHHccchhhhcCCcceeecccccchhhcccCceeeeeecch-HHhh
Confidence 35788888889999999998 22223322334556999977641 10001233456999999873 4544
No 25
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00037 Score=81.07 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=27.8
Q ss_pred CcEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHH-------hcCCcEEEecccCCC
Q 006881 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLL-------CQGRRIFVVGDLNIA 188 (627)
Q Consensus 138 ~~~~LinVY~P~~~~~~~eR~~~k~~f~~~~~~~L~-------~~g~~VII~GDFN~~ 188 (627)
..|.+++-|.-++...=.||. .=|...++.|. .....|+++||||--
T Consensus 673 TsfCFv~SHlAAG~snv~ERn----~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 673 TSFCFVCSHLAAGQSNVEERN----EDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred ccEEEEecccccccchHhhhh----hhHHHHHHhccccCCccccCCceEEEeccccee
Confidence 457777778766654323342 22233445542 345679999999953
No 26
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair]
Probab=97.43 E-value=5.9e-05 Score=84.24 Aligned_cols=40 Identities=30% Similarity=0.752 Sum_probs=35.2
Q ss_pred CCCCCCCccccceeecCCCCCCCceeeeCCCCCCCCCCCCCCCCceeec
Q 006881 572 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 620 (627)
Q Consensus 572 p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~ 620 (627)
..|. |+..++.++|.|.|||.||.||.|..+ ..|+||.|+
T Consensus 719 ~~c~-c~~ra~~l~v~k~~~nrGR~f~sc~~~--------k~c~ff~w~ 758 (758)
T KOG1956|consen 719 VTCG-CGTRAVKLLVAKTEPNRGRKFYSCLPE--------KSCNFFAWE 758 (758)
T ss_pred cccC-CcchhhhhhhhccCccCCCCCcccCCC--------CCcceEeeC
Confidence 4788 999999999999999999999999743 459999996
No 27
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=97.00 E-value=0.012 Score=67.81 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCcEEEEecccc
Q 006881 20 SLRKLLDSFDADIICFQETKL 40 (627)
Q Consensus 20 ~l~~~L~~l~aDIIcLQETk~ 40 (627)
.+...|..+++||+.|-|..-
T Consensus 506 k~v~ai~~ldaDV~GL~Eien 526 (798)
T COG2374 506 KIVTAILTLDADVLGLMEIEN 526 (798)
T ss_pred HHHHHHhhcchhhheeeeeec
Confidence 488899999999999999864
No 28
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=95.56 E-value=0.16 Score=58.01 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.5
Q ss_pred CCCCCccceEEEEeecC
Q 006881 308 LEGSDHAPVYMCLGEVP 324 (627)
Q Consensus 308 ~~~SDH~PV~~~l~~~~ 324 (627)
+..|||.||++.|....
T Consensus 577 i~~SDHRPV~A~F~v~V 593 (621)
T PLN03191 577 IRLSDHRPVSSMFLVEV 593 (621)
T ss_pred cccCCchhcceEEEEEE
Confidence 57899999999998654
No 29
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=94.19 E-value=0.028 Score=57.03 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=39.3
Q ss_pred CCCCCCCCCCccccceeecCCCCCCCceeeeCCCCCCCCCCCCCCCCceeecCCCCC
Q 006881 569 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 625 (627)
Q Consensus 569 ~~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~~~~ 625 (627)
.++|+|. || ||. +-||+.|+---|.||+|+--+- ...-|+||+|.++...
T Consensus 11 ~~~P~C~-HG-P~L-LF~K~~~~E~~~~F~ACs~~R~----d~kfC~F~~~~d~~~~ 60 (325)
T KOG4399|consen 11 VPAPLCP-HG-PTL-LFVKVTQKEETRRFYACSACRM----DDKFCHFFMFEDEFFD 60 (325)
T ss_pred CCCCcCC-CC-CeE-EEEEccCcchheeeehhhhhhc----chhccchhhhcccccC
Confidence 5789999 87 554 5678999999999999986422 3567999999997543
No 30
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=88.55 E-value=0.86 Score=50.09 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=13.8
Q ss_pred CCCCCccceEEEEeec
Q 006881 308 LEGSDHAPVYMCLGEV 323 (627)
Q Consensus 308 ~~~SDH~PV~~~l~~~ 323 (627)
++.|||.||++.+...
T Consensus 312 l~~SDHrPV~a~~~~~ 327 (460)
T COG5411 312 LMISDHRPVYATFRAK 327 (460)
T ss_pred eeecCCCeEEEEEecc
Confidence 4889999999999754
No 31
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=81.31 E-value=2.1 Score=31.31 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=25.7
Q ss_pred CCCCCCccccceeecCCCCCCCceeeeCCCCCCCCCCCCCCCCceeecCC
Q 006881 573 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS 622 (627)
Q Consensus 573 ~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~ 622 (627)
.|..|+.+-+.+..++ | .||.|++- -.|.|..|..+
T Consensus 3 ~CP~Cg~~lv~r~~k~-----g-~F~~Cs~y--------P~C~~~~~~~~ 38 (39)
T PF01396_consen 3 KCPKCGGPLVLRRGKK-----G-KFLGCSNY--------PECKYTEPLPK 38 (39)
T ss_pred CCCCCCceeEEEECCC-----C-CEEECCCC--------CCcCCeEeCCC
Confidence 5777777666666544 2 99999861 27999999764
No 32
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=60.84 E-value=6.6 Score=45.33 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=25.3
Q ss_pred EEEEeccCcchhhhhhhHHHHHHhhcCC-c--EEEEeccc
Q 006881 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDA-D--IICFQETK 39 (627)
Q Consensus 3 IlTwNInGlr~~~~~~~~l~~~L~~l~a-D--IIcLQETk 39 (627)
|.||||+|-..+..- .|..+|...++ | ||.|||+-
T Consensus 112 v~TWNV~g~~p~~~l--~l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 112 IGTWNVAGRLPSEDL--EIEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred EEEeecCCCCCcccC--CHHHhccCCCCCCEEEEeeEEec
Confidence 679999998765332 37777777665 7 46679984
No 33
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=56.13 E-value=3.7 Score=33.90 Aligned_cols=43 Identities=33% Similarity=0.861 Sum_probs=16.5
Q ss_pred HHHHHHhhhcCCCCCCCCCCCccccceeecCCCCCCCceeeeCCCCCCCCCCCCCCCCcee
Q 006881 558 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 618 (627)
Q Consensus 558 ~~w~~~~~~~~~~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~ 618 (627)
..|.+= ...+|.|. -||.|.+| .|+-.||. --|+| | ..||||+
T Consensus 27 p~~EKK----~g~vP~Cd-~GE~CAvr----kG~RIGkl-CdC~r--G------~~CN~fl 69 (73)
T PF06373_consen 27 PSWEKK----YGQVPSCD-VGEQCAVR----KGPRIGKL-CDCPR--G------TSCNFFL 69 (73)
T ss_dssp ---------------B---SSS-SEEE-----SSSEEE---B--T--T--------B-TTT
T ss_pred Chhhhh----cCcCCCCC-CCchhhhc----cccccccc-cCCCC--C------CchhhhH
Confidence 456552 23589999 99999754 48888874 34544 3 7899996
No 34
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=55.31 E-value=27 Score=37.01 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=31.0
Q ss_pred CcEEEEEEecCCCCCCchHH-------HHHHHHHHHHH---HHHHHhcCCcEEEecccCCCCC
Q 006881 138 GHFILFNVYGPRADSEDTVR-------IQFKLQFFHKR---WEFLLCQGRRIFVVGDLNIAPA 190 (627)
Q Consensus 138 ~~~~LinVY~P~~~~~~~eR-------~~~k~~f~~~~---~~~L~~~g~~VII~GDFN~~~~ 190 (627)
..|-++|+|.-+....-..+ ..+|.+-|... ...+.....++++.||||.-.+
T Consensus 80 t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld 142 (356)
T PTZ00312 80 VVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLD 142 (356)
T ss_pred EEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeec
Confidence 46899999997765432222 11222222222 2223345789999999997554
No 35
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=45.53 E-value=7.5 Score=42.80 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=7.7
Q ss_pred cccCccccccccccC
Q 006881 459 SQLGQLSLKSFFHKR 473 (627)
Q Consensus 459 ~~~~q~sl~~fF~~~ 473 (627)
...+|+||||||+++
T Consensus 416 ~k~kQ~simsFF~KK 430 (430)
T PF09507_consen 416 KKKKQGSIMSFFKKK 430 (430)
T ss_dssp ---EE--GGGTSB--
T ss_pred CCCCCcchhhhccCC
Confidence 446899999999863
No 36
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=40.92 E-value=23 Score=26.90 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=27.4
Q ss_pred CCCCCCccccceeecCCCCCCCceeeeCCCC
Q 006881 573 LCKGHKEPCVARVVKKPGPTFGRRFFVCARA 603 (627)
Q Consensus 573 ~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~ 603 (627)
.|+-||.+++.|+..+..+..-+.+|.|..+
T Consensus 1 ~CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N~ 31 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLSPLTRELYCQCTNP 31 (47)
T ss_pred CcCCCCCeeEEEEchhhCcceEEEEEEECCC
Confidence 3777889999999999999999999999643
No 37
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=27.47 E-value=74 Score=28.00 Aligned_cols=44 Identities=25% Similarity=0.618 Sum_probs=31.9
Q ss_pred CCCCCCCCccccceeecCCCCCCCceeeeCCC--CCCCCCCCCCCCCceeec
Q 006881 571 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR--AEGPASNPEANCGYFKWA 620 (627)
Q Consensus 571 ~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~--~~g~~~~~~~~c~ff~W~ 620 (627)
+.-|. |+..-|..|. ..--..|..||.|+- ..| +..+|+|-.|-
T Consensus 20 ~ie~d-cnakvvvats-~dpvts~klyfscpyeisdg----~g~~~gfkrww 65 (122)
T PF05325_consen 20 PIECD-CNAKVVVATS-RDPVTSGKLYFSCPYEISDG----PGRGCGFKRWW 65 (122)
T ss_pred ceecc-CCceEEEEec-cCCcccceeeecCccccccC----CCCCccceeEE
Confidence 44688 8777665554 446678999999976 444 45789999984
Done!