Query 006881
Match_columns 627
No_of_seqs 355 out of 2129
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 1.1E-41 3.6E-46 346.1 25.5 247 1-323 4-258 (265)
2 2j63_A AP-endonuclease; base e 100.0 1.9E-40 6.6E-45 365.9 23.5 272 1-322 150-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 5.5E-36 1.9E-40 300.8 25.1 245 1-321 2-256 (257)
4 2jc5_A Exodeoxyribonuclease; h 100.0 6.4E-36 2.2E-40 299.9 21.4 247 1-322 2-256 (259)
5 1hd7_A DNA-(apurinic or apyrim 100.0 5.4E-36 1.8E-40 313.7 20.4 247 1-321 62-317 (318)
6 2o3h_A DNA-(apurinic or apyrim 100.0 1.4E-35 4.8E-40 303.5 22.3 247 1-321 29-284 (285)
7 2jc4_A Exodeoxyribonuclease II 100.0 4.1E-35 1.4E-39 293.5 23.7 246 1-321 1-255 (256)
8 1ako_A Exonuclease III; AP-end 100.0 2E-34 6.9E-39 290.4 21.3 248 1-321 1-267 (268)
9 1vyb_A ORF2 contains A reverse 100.0 6.6E-34 2.2E-38 281.2 21.1 226 1-321 8-238 (238)
10 2ei9_A Non-LTR retrotransposon 100.0 7.6E-31 2.6E-35 265.4 16.8 212 1-324 8-221 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 100.0 9.2E-28 3.2E-32 240.9 21.1 219 1-322 20-243 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 100.0 5.3E-27 1.8E-31 251.1 23.8 230 1-321 120-361 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.9 1.9E-25 6.6E-30 221.7 24.4 231 1-321 14-255 (256)
14 3teb_A Endonuclease/exonucleas 99.9 3E-24 1E-28 215.7 18.7 238 1-321 4-265 (266)
15 4f1h_A Tyrosyl-DNA phosphodies 99.9 1.7E-23 5.9E-28 204.2 20.9 235 1-321 4-249 (250)
16 4gz1_A Tyrosyl-DNA phosphodies 99.9 1.2E-23 3.9E-28 208.5 18.6 234 1-323 10-255 (256)
17 3l1w_A Uncharacterized protein 99.9 1.2E-22 4E-27 204.2 24.6 239 1-323 1-252 (257)
18 3g6s_A Putative endonuclease/e 99.9 4.8E-22 1.6E-26 201.1 23.0 245 1-324 4-262 (267)
19 1zwx_A SMCL, sphingomyelinase- 99.9 7.3E-21 2.5E-25 195.5 19.3 209 1-263 11-256 (301)
20 3mpr_A Putative endonuclease/e 99.8 6.7E-20 2.3E-24 189.5 22.1 213 1-263 7-236 (298)
21 2ddr_A Sphingomyelin phosphodi 99.8 9.5E-20 3.2E-24 187.4 20.1 214 1-264 10-262 (306)
22 3i41_A Beta-hemolysin; beta to 99.8 1E-18 3.6E-23 182.8 19.3 208 1-264 30-275 (317)
23 3ngq_A CCR4-NOT transcription 99.7 2.6E-16 8.9E-21 170.1 21.5 81 1-82 32-133 (398)
24 4b8c_D Glucose-repressible alc 99.6 2.4E-16 8.1E-21 182.9 3.6 81 1-81 395-495 (727)
25 2f1n_A CDT B, cytolethal diste 99.5 6.9E-14 2.4E-18 141.1 15.3 149 1-191 16-192 (262)
26 2a40_B Deoxyribonuclease-1; WA 99.5 9.2E-14 3.2E-18 140.5 14.4 158 1-190 1-174 (260)
27 1sr4_B CDT B, cytolethal diste 99.5 5.2E-13 1.8E-17 135.8 17.6 40 1-40 5-47 (261)
28 1i9z_A Synaptojanin, phosphati 99.3 1.6E-10 5.6E-15 122.6 22.3 34 1-38 27-65 (347)
29 2imq_X Salivary nitrophorin; f 99.3 5.5E-12 1.9E-16 130.2 10.5 37 1-41 9-50 (282)
30 2xsw_A 72 kDa inositol polypho 99.2 9.2E-10 3.1E-14 117.2 19.7 74 1-82 28-107 (357)
31 3mtc_A Type II inositol-1,4,5- 98.8 1.3E-07 4.6E-12 98.5 20.1 38 1-42 10-51 (313)
32 4a9c_A Phosphatidylinositol-3, 98.6 1.7E-06 5.7E-11 90.4 18.5 70 2-82 11-101 (316)
33 1hy9_A Cocaine and amphetamine 69.1 2 6.8E-05 30.4 1.5 35 570-618 3-37 (41)
34 2zvk_U DNA polymerase ETA, pro 26.4 15 0.00052 23.3 0.2 12 462-473 8-19 (26)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=1.1e-41 Score=346.15 Aligned_cols=247 Identities=34% Similarity=0.599 Sum_probs=199.9
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||||++.+.++ .+.++|+.++|||||||||+.....+...+....||..++... ++.||+|||||+|
T Consensus 4 l~i~s~Nv~g~~~~~~~--~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~-----~~~~~~Gvail~k 76 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRK--GFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPA-----ERKGYSGVAMYTK 76 (265)
T ss_dssp EEEEEEECSCHHHHHHH--THHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECB-----SSTTSCCEEEEES
T ss_pred cEEEEEEcCCchhhhhh--hHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccC-----CCCCcCEEEEEEe
Confidence 69999999999987775 3999999999999999999988777654444468999888643 3467889999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHHH
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (627)
.+ ++....++. ....|.+||++.++++.++|+|||+|+... ..+|+.+
T Consensus 77 ~~----------~~~~~~~~~---------------------~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~~ 124 (265)
T 3g91_A 77 VP----------PSSLREGFG---------------------VERFDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLKY 124 (265)
T ss_dssp SC----------CSEEECCCS---------------------CHHHHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHHH
T ss_pred cC----------hHHhccCCC---------------------CcccCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHHH
Confidence 83 333333331 023578999999999999999999999986 5789999
Q ss_pred HHHHHHHHHHH---HHhcCCcEEEecccCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCcccccccccCCCC
Q 006881 161 KLQFFHKRWEF---LLCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 232 (627)
Q Consensus 161 k~~f~~~~~~~---L~~~g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 232 (627)
|+.|++.+.+. +...+.++||+||||+++.++|..+.. .+|.+.+ +.+|+.++ +.| |+|+||.+||..
T Consensus 125 r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~g--l~D~~r~~~p~~ 200 (265)
T 3g91_A 125 KLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVE-RAWIDKFI-ENG--YVDTFRMFNSDP 200 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHH-HHHHHHHH-HTT--EEETHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHH-HHHHHHHH-hcC--cEEeeHhhCCCC
Confidence 99998554443 334579999999999999998887542 4555544 78999888 665 999999999997
Q ss_pred CCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCC
Q 006881 233 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 312 (627)
Q Consensus 233 ~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SD 312 (627)
. .||||+.+++++..|.|+||||||+++.+.. .+.++.|.+. ..+||
T Consensus 201 ~-~yT~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~~~~~~i~~~-------------------~~~SD 247 (265)
T 3g91_A 201 G-QYTWWSYRTRARERNVGWRLDYFFVNEEFKG-------------KVKRSWILSD-------------------VMGSD 247 (265)
T ss_dssp C-CCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG-------------GEEEEEECTT-------------------CCSSS
T ss_pred C-CCCCcCCCCCccccCceEEEEEEEECHHHHh-------------hhcEEEEeCC-------------------CCCCC
Confidence 6 6999999999999999999999999998754 6889999764 36899
Q ss_pred ccceEEEEeec
Q 006881 313 HAPVYMCLGEV 323 (627)
Q Consensus 313 H~PV~~~l~~~ 323 (627)
||||+++|...
T Consensus 248 H~Pv~~~~~~~ 258 (265)
T 3g91_A 248 HCPIGLEIELL 258 (265)
T ss_dssp BCCEEEEEECC
T ss_pred cceEEEEhhhh
Confidence 99999999854
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=1.9e-40 Score=365.91 Aligned_cols=272 Identities=27% Similarity=0.394 Sum_probs=194.1
Q ss_pred CEEEEEeccCcchhhhhh-hHHHHHHhhcCCcEEEEecccchhcchhhH--HHhhcCCcEEeeccccCCCCCCcceEEEE
Q 006881 1 MKIVTYNVNGLRQRVSQF-GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADGYESFFSCTRTSDKGRTGYSGVAT 77 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~-~~l~~~L~~l~aDIIcLQETk~t~~~l~~~--l~~~~GY~~~fs~~~~~~~gr~GysGVAI 77 (627)
|||+||||||++...++. ..|.++|+.++|||||||||+.....+... +....||+.||..+ .++.||+||||
T Consensus 150 LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~----~~~~g~~GVAI 225 (467)
T 2j63_A 150 YKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC----AFKRGYSGTRT 225 (467)
T ss_dssp EEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC----SSSTTSCCEEE
T ss_pred eEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecc----cCCCCcceEEE
Confidence 799999999998776542 359999999999999999999876655421 22357898777643 24568899999
Q ss_pred EEeeccCCCCccccccee--eeecccccccccccccccCccccccccccccCCCCcEEEEEe----------CcEEEEEE
Q 006881 78 FCRVKSPFSSTEVALPVA--AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----------GHFILFNV 145 (627)
Q Consensus 78 lsR~~~~f~~~~~~~Pi~--aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~----------~~~~LinV 145 (627)
|+|+++. ..++. ...++......+.....+....+ ....|.+||+|.+++ ..|+|+|+
T Consensus 226 lsR~pi~------~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~----~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinv 295 (467)
T 2j63_A 226 YMKNSTT------VKGLHARCTRGFALPSEPQADAAAGSRVLV----EGAGDEEGRVLTTFLSPDPDSASSSSRIALVNT 295 (467)
T ss_dssp EEECCCC------CCTSCCEEEESSCCCCC-----------CC----CCCCCTTCCEEEEEECSSCCC----CCEEEEEE
T ss_pred EEeCCcc------ccccceeeeecccccccccccccccccccc----ccccCCCCcEEEEEEEeCCcccccCceEEEEEE
Confidence 9998520 01111 23333211000000000000000 023578999999887 67999999
Q ss_pred ecCCCCCCchHHHHHHHH-HHH---HHHHHHHh------------------cCCcEEEecccCCCCCcccccCC------
Q 006881 146 YGPRADSEDTVRIQFKLQ-FFH---KRWEFLLC------------------QGRRIFVVGDLNIAPAAIDRCDA------ 197 (627)
Q Consensus 146 Y~P~~~~~~~eR~~~k~~-f~~---~~~~~L~~------------------~g~~VII~GDFN~~~~~iD~~~~------ 197 (627)
|+|+.+. ..+|+.+|+. |+. .++..+.. .+.+|||+||||+++..+|++++
T Consensus 296 YlP~~~~-~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~ 374 (467)
T 2j63_A 296 YVANSGM-GLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSM 374 (467)
T ss_dssp ECCCCCT-TSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHH
T ss_pred ECCCCCc-chHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhc
Confidence 9999874 3567777773 433 23333331 35899999999999999998651
Q ss_pred --CCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccc
Q 006881 198 --GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 275 (627)
Q Consensus 198 --~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~ 275 (627)
..+|...+ |.||..+|...+ |+|+||.+||...+.||||+++.++++.|+|.||||||+++.+..
T Consensus 375 ~~~~gf~~~e-r~~~~~lL~~~g--L~DafR~~~p~~~~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~---------- 441 (467)
T 2j63_A 375 QECSGFAPEE-RMSFRETMQRTN--SVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLAS---------- 441 (467)
T ss_dssp TTSTTSCHHH-HHHHHHHHHHTT--EEEHHHHHCTTBCSCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGG----------
T ss_pred ccccccCHHH-HHHHHHHHhhCC--CEEehHhhCCCCCCCccccCCCCCcccCCCCceeEEEEEcHHHHc----------
Confidence 24566655 899999887666 999999999986667999999999988999999999999987643
Q ss_pred cccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccceEEEEee
Q 006881 276 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 322 (627)
Q Consensus 276 ~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~PV~~~l~~ 322 (627)
.|.++.|+.. ..+||||||+++|..
T Consensus 442 ---~v~~~~I~~~-------------------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 442 ---YVVDCFPMPT-------------------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp ---GEEEEEECTT-------------------CCSSSBCCEEEEEEC
T ss_pred ---ceeEEEECCC-------------------CCCCCcccEEEEEEc
Confidence 6889999764 368999999999974
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.5e-36 Score=300.83 Aligned_cols=245 Identities=29% Similarity=0.433 Sum_probs=181.1
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||+|++.+.++ +.++|+.++|||||||||+.....+....+...||..++.. ..|+.|||||+|
T Consensus 2 lrv~t~Nv~g~~~~~~~---i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 71 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHI---VIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG-------SKGRNGVAIASL 71 (257)
T ss_dssp EEEEEEECSCGGGTHHH---HHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE-------ETTEEEEEEEES
T ss_pred eEEEEEecCChHHHHHH---HHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC-------CCCccEEEEEEc
Confidence 69999999999877654 99999999999999999997655554333446799877652 246679999999
Q ss_pred eccCCCCccccccee-eeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHH
Q 006881 81 VKSPFSSTEVALPVA-AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~-aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~ 159 (627)
++ +. ...++.+ ...| ++|++.++++.|.|+|+|+|+....+.+|..
T Consensus 72 ~~-----------~~~~~~~~~~---------------------~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~ 118 (257)
T 2voa_A 72 EE-----------PEDVSFGLDS---------------------EPKD-EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQ 118 (257)
T ss_dssp SC-----------CEEEEESCSS---------------------SSCC-GGGEEEEEETTEEEEEEECCCCSCTTSHHHH
T ss_pred cC-----------hHHheecCCC---------------------Cccc-cCcEEEEEECCEEEEEEEeCCCCCCCcHHHH
Confidence 83 32 2222210 0134 8899888889999999999998753456777
Q ss_pred HHHHHHHHHHHHHH---hcCCcEEEecccCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCcccccccccCCC
Q 006881 160 FKLQFFHKRWEFLL---CQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 231 (627)
Q Consensus 160 ~k~~f~~~~~~~L~---~~g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 231 (627)
+|.+|+..+.+.+. ..+.++||+||||+.+.++|.+... .++...+ +.+|..++ +.| |+|+||..+|.
T Consensus 119 ~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~p~ 194 (257)
T 2voa_A 119 YKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDA-RRAYKKIL-ELG--FVDVLRKIHPN 194 (257)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHH-HHHHHHHH-TTT--CEEHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHhCCCCCCCHHH-HHHHHHHH-HcC--cEeeehhhCCC
Confidence 77777755444332 3578999999999999888875431 2344333 67888777 444 99999999998
Q ss_pred CCCccccCCC-CCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCC
Q 006881 232 RREAYTCWPS-NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 310 (627)
Q Consensus 232 ~~~~yT~ws~-~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~ 310 (627)
.. .||||+. +.+++..+.+.||||||+++.+.. .+.++.|....+. ...+
T Consensus 195 ~~-~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~---------------~~~~ 245 (257)
T 2voa_A 195 ER-IYTFYDYRVKGAIERGLGWRGDAILATPPLAE-------------RCVDCYADIKPRL---------------AEKP 245 (257)
T ss_dssp CC-CCSBCCTTSTTTTTTTCCBCCEEEEECHHHHT-------------TEEEEEECCHHHH---------------SSSC
T ss_pred CC-CcceeccccCCceecCceEEEEEEEECHHHHh-------------hhheeEeehhhcc---------------CCCC
Confidence 64 5999998 777776788999999999987532 4788888764211 0268
Q ss_pred CCccceEEEEe
Q 006881 311 SDHAPVYMCLG 321 (627)
Q Consensus 311 SDH~PV~~~l~ 321 (627)
|||+||.++|.
T Consensus 246 SDH~pv~~~l~ 256 (257)
T 2voa_A 246 SDHLPLVAVFD 256 (257)
T ss_dssp CSBCCEEEEEC
T ss_pred CCccCEEEEEe
Confidence 99999999985
No 4
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=6.4e-36 Score=299.87 Aligned_cols=247 Identities=30% Similarity=0.508 Sum_probs=185.4
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||+|++...++ .+.++|+..+|||||||||+.....+...++...||..++... +..|+.|||||+|
T Consensus 2 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~-----~~~~~~G~ailsr 74 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK--GFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCA-----EKRGYSGVAVYSK 74 (259)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECC-----SSTTCCCEEEEES
T ss_pred cEEEEEeeccHHHHHHh--HHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEecc-----CCCCcceEEEEEe
Confidence 69999999999876654 3999999999999999999977655544444567998877643 2345679999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHHH
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (627)
++ ++....++. ....|.+||++.++++.+.|+|+|+|+... ..+|..+
T Consensus 75 ~~----------~~~~~~~~~---------------------~~~~~~~~r~~~~~~~~~~v~~~h~~~~~~-~~~r~~~ 122 (259)
T 2jc5_A 75 RK----------PDNVQIGMG---------------------IEEFDREGRFVRCDFGRLSVISLYLPSGSS-AEERQQV 122 (259)
T ss_dssp SC----------CSEEEESCS---------------------CHHHHTTCCEEEEEETTEEEEEEECCCCTT-CHHHHHH
T ss_pred cC----------ceeEEeCCC---------------------CCccCCCCeEEEEEcCCEEEEEEeccCCCC-CcHHHHH
Confidence 84 222222221 012456899999999999999999999875 4677777
Q ss_pred HHHHHHHHHHHH---HhcCCcEEEecccCCCCCcccccCCC-----CCCCchHHHHHHHHHHHHcCCcccccccccCCCC
Q 006881 161 KLQFFHKRWEFL---LCQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 232 (627)
Q Consensus 161 k~~f~~~~~~~L---~~~g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 232 (627)
|+.|+..+.+.+ ...+.++||+||||+.+..+|.+... .++.+.+ +.+|..++...| |.|+||..+|..
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--l~d~~~~~~~~~ 199 (259)
T 2jc5_A 123 KYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEE-REWIGKVIHKLG--WTDMWRTLYPDV 199 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHH-HHHHHHHHHTTC--CEEHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHhccCC--cEEeeHhhCCCC
Confidence 777775544433 33589999999999999888865432 2344333 677888876555 999999999976
Q ss_pred CCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCC
Q 006881 233 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 312 (627)
Q Consensus 233 ~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SD 312 (627)
.+ ||||+.+...+..+.+.||||||+++.+.. .+.++.|... ..+||
T Consensus 200 ~~-~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~-------------------~~~SD 246 (259)
T 2jc5_A 200 PG-YTWWSNRGQAYAKDVGWRIDYQMVTPELAA-------------KAVSAHVYKD-------------------EKFSD 246 (259)
T ss_dssp CC-CCEESCSSHHHHTTCEECCEEEEECHHHHT-------------TEEEEEECCS-------------------SCCSS
T ss_pred CC-ccEECCcCCCccCCCeeEEEEEEECHHHHh-------------HHhheeecCC-------------------CCCCC
Confidence 66 999998876666677899999999986532 4788888753 37899
Q ss_pred ccceEEEEee
Q 006881 313 HAPVYMCLGE 322 (627)
Q Consensus 313 H~PV~~~l~~ 322 (627)
|+||.++|..
T Consensus 247 H~pv~~~l~~ 256 (259)
T 2jc5_A 247 HAPLVVEYDY 256 (259)
T ss_dssp BCCEEEEESC
T ss_pred cccEEEEEec
Confidence 9999999975
No 5
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=5.4e-36 Score=313.75 Aligned_cols=247 Identities=29% Similarity=0.480 Sum_probs=175.3
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCC-cEEeeccccCCCCCCcceEEEEEE
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIls 79 (627)
|||+||||+|++...++ .|.++|+.++|||||||||+.....+...+....|| +.|+... ....|+.|||||+
T Consensus 62 lrv~t~Nv~g~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 135 (318)
T 1hd7_A 62 LKICSWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 135 (318)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC---------CCCEEEEE
T ss_pred eEEEEEecCcchhhhhh--hHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEEEecC----CCCCccceEEEEE
Confidence 69999999999876554 399999999999999999987655454334446799 6676642 1245777999999
Q ss_pred eeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHH
Q 006881 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (627)
Q Consensus 80 R~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~ 159 (627)
|.+ ++....++. ....|.+||++.++++.|.|+|+|+|+... ..+|+.
T Consensus 136 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~-~~~~~~ 183 (318)
T 1hd7_A 136 RQC----------PLKVSYGIG---------------------DEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE 183 (318)
T ss_dssp SSC----------CSEEEESCS---------------------CGGGSSSSCEEEEECSSCEEEEEECCCCCG-GGTTHH
T ss_pred cCC----------ceeEEecCC---------------------CcccCCCCcEEEEEcCCEEEEEEEcCCCCC-ccccHH
Confidence 983 333333321 012467899999999999999999998764 245566
Q ss_pred HHHHHHHHHHHHHHh--cCCcEEEecccCCCCCcccccC-----CCCCCCchHHHHHH-HHHHHHcCCcccccccccCCC
Q 006881 160 FKLQFFHKRWEFLLC--QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPE 231 (627)
Q Consensus 160 ~k~~f~~~~~~~L~~--~g~~VII~GDFN~~~~~iD~~~-----~~~~f~~~~~r~~l-~~lL~~~g~~L~D~~R~~hP~ 231 (627)
+|..|+..+.+.+.. ...++||+||||+.+..+|++. ...+|...+ +.+| ..++.. | |+|+||..+|.
T Consensus 184 ~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~ll~~-~--l~D~~r~~~p~ 259 (318)
T 1hd7_A 184 YRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYPN 259 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChhhcCCCCCcCHHH-HHHHHHHHhhC-C--CEEeehhhCCC
Confidence 666676444333321 2389999999999998888643 224555444 7788 777753 4 99999999998
Q ss_pred CCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCC
Q 006881 232 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 311 (627)
Q Consensus 232 ~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~S 311 (627)
..+.||||+.+.+.+..+++.||||||+++.+.. .|.++.|... ..+|
T Consensus 260 ~~~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~v~~~~v~~~-------------------~~~S 307 (318)
T 1hd7_A 260 TPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK-------------------ALGS 307 (318)
T ss_dssp CTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT-------------------CCSS
T ss_pred CCCCcceECCcCCCcccCCceEEEEEEECHHHHh-------------hhhheEeecc-------------------CCCC
Confidence 6546999998877666778999999999987632 5788888754 3579
Q ss_pred CccceEEEEe
Q 006881 312 DHAPVYMCLG 321 (627)
Q Consensus 312 DH~PV~~~l~ 321 (627)
||+||+++|.
T Consensus 308 DH~Pv~~~l~ 317 (318)
T 1hd7_A 308 DHCPITLYLA 317 (318)
T ss_dssp SBCCEEEEEC
T ss_pred CccCEEEEec
Confidence 9999999985
No 6
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=1.4e-35 Score=303.53 Aligned_cols=247 Identities=29% Similarity=0.483 Sum_probs=182.0
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCC-cEEeeccccCCCCCCcceEEEEEE
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY-~~~fs~~~~~~~gr~GysGVAIls 79 (627)
|||+||||+|++...++ .|.++|+..+|||||||||+.....+...++...|| +.|+... ....|+.|||||+
T Consensus 29 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 102 (285)
T 2o3h_A 29 LKIASWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 102 (285)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECB----C--CCSCCEEEEE
T ss_pred eEEEEEecccChhhhhh--hHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEEEecc----cCCcccceEEEEE
Confidence 69999999999876554 399999999999999999997655554334446789 6677653 1345667999999
Q ss_pred eeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHH
Q 006881 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (627)
Q Consensus 80 R~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~ 159 (627)
|++ ++....++. ....+.+||++.++++.|.|+|+|+|+... ..+|.+
T Consensus 103 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~-~~~~~~ 150 (285)
T 2o3h_A 103 RQC----------PLKVSYGIG---------------------DEEHDQEGRVIVAEFDSFVLVTAYVPNAGR-GLVRLE 150 (285)
T ss_dssp SSC----------CSEEEESCS---------------------CGGGSSBCCEEEEECSSCEEEEEECCCCCG-GGTTHH
T ss_pred ccC----------hHHeeeccC---------------------CcccCCCCcEEEEEeCCEEEEEEEcCCCCC-cchhHH
Confidence 983 333333221 012467899998999999999999998764 345666
Q ss_pred HHHHHHHHHHHHHH--hcCCcEEEecccCCCCCcccccCCC-----CCCCchHHHHHH-HHHHHHcCCcccccccccCCC
Q 006881 160 FKLQFFHKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPE 231 (627)
Q Consensus 160 ~k~~f~~~~~~~L~--~~g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l-~~lL~~~g~~L~D~~R~~hP~ 231 (627)
+|..|++.+.+.+. ....++||+||||+.+..+|.+... .+|...+ +.+| ..++.. + |+|+||.++|.
T Consensus 151 ~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~~l~~-~--l~D~~~~~~~~ 226 (285)
T 2o3h_A 151 YRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYPN 226 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHHhcC-C--CEEEEEecCCC
Confidence 66667644433332 2358999999999999888865322 3444433 6788 877754 5 99999999998
Q ss_pred CCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCC
Q 006881 232 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 311 (627)
Q Consensus 232 ~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~S 311 (627)
..+.||||+.+...+..+.+.||||||+++.+.. .+.++.|... ..+|
T Consensus 227 ~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~v~~~~v~~~-------------------~~~S 274 (285)
T 2o3h_A 227 TPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK-------------------ALGS 274 (285)
T ss_dssp CCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT-------------------CCSS
T ss_pred CCCcEeEecCcCCccccCceeEEEEEEECHHHHh-------------hhhheEeecc-------------------CCCC
Confidence 6546999998877666678899999999987532 5788888763 3589
Q ss_pred CccceEEEEe
Q 006881 312 DHAPVYMCLG 321 (627)
Q Consensus 312 DH~PV~~~l~ 321 (627)
||+||+++|.
T Consensus 275 DH~pv~~~l~ 284 (285)
T 2o3h_A 275 DHCPITLYLA 284 (285)
T ss_dssp SBCCEEEEEC
T ss_pred CeecEEEEec
Confidence 9999999985
No 7
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=4.1e-35 Score=293.46 Aligned_cols=246 Identities=30% Similarity=0.468 Sum_probs=180.9
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||+|++.+... |.++|+.++|||||||||+.....+...++...||..++.. ..++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~~---i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 70 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLPQ---VQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG-------QKTYNGVAIVSR 70 (256)
T ss_dssp CEEEEEECSCHHHHHHH---HHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC-------CSSSCCEEEEES
T ss_pred CEEEEEEcCCcHHHHHH---HHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC-------CCcceEEEEEEC
Confidence 89999999999877654 99999999999999999987665444334456799877652 245679999999
Q ss_pred eccCCCCccccccee-eeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHH
Q 006881 81 VKSPFSSTEVALPVA-AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~-aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~ 159 (627)
.+ +. ...++.+ ...+.++|++.++++.|.|+|+|+|+......++..
T Consensus 71 ~~-----------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~ 118 (256)
T 2jc4_A 71 SV-----------PQDVHFGLPA---------------------LPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFK 118 (256)
T ss_dssp SC-----------CEEEEESCTT---------------------STTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHH
T ss_pred CC-----------hHHheecCCC---------------------CccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHH
Confidence 83 32 2222210 013568899988889999999999998764456777
Q ss_pred HHHHHHHHHHHH---HHhcCCcEEEecccCCCCCcccccCC-----CCCCCchHHHHHHHHHHHHcCCcccccccccCCC
Q 006881 160 FKLQFFHKRWEF---LLCQGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 231 (627)
Q Consensus 160 ~k~~f~~~~~~~---L~~~g~~VII~GDFN~~~~~iD~~~~-----~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 231 (627)
+|..+++.+.+. +...+.++||+||||..+...|.... ..++.+.+ +.+++.++ +.| |+|+||..+|.
T Consensus 119 ~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~~~ 194 (256)
T 2jc4_A 119 YKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVE-RQWFQNLL-DLG--LTDSLRQVHPE 194 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHH-HHHHHHHH-TTT--CEEHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHhCCCCCcCHHH-HHHHHHHH-hcC--cEEhhhhhCCC
Confidence 777776444333 33468899999999999888776432 23444433 67787776 344 99999999998
Q ss_pred CCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCC
Q 006881 232 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 311 (627)
Q Consensus 232 ~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~S 311 (627)
.. .||||+.+.+.++.+.+.||||||+++.+.. .+.++.|....+. ...+|
T Consensus 195 ~~-~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~---------------~~~~S 245 (256)
T 2jc4_A 195 GA-FYTWFDYRGAMFQRKLGLRIDHILVSPAMAA-------------ALKDVRVDLETRA---------------LERPS 245 (256)
T ss_dssp SC-CCCBCCTTTTHHHHTCCBCCEEEEECHHHHT-------------TEEEEEECHHHHT---------------SSSCC
T ss_pred CC-ceeeEcCCCCccccCcEEEEEEEEECHHHHh-------------heeEEEEEhhccc---------------CCCCC
Confidence 54 5999998877666678899999999986532 4788888764211 13689
Q ss_pred CccceEEEEe
Q 006881 312 DHAPVYMCLG 321 (627)
Q Consensus 312 DH~PV~~~l~ 321 (627)
||+||.++|.
T Consensus 246 DH~pv~~~l~ 255 (256)
T 2jc4_A 246 DHAPVTAEFD 255 (256)
T ss_dssp SBCCEEEEEC
T ss_pred CcccEEEEec
Confidence 9999999985
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=2e-34 Score=290.37 Aligned_cols=248 Identities=28% Similarity=0.518 Sum_probs=176.9
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||+|++.+.. .|.++|+.++|||||||||+.....+...++...||..++... .++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~---~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~~-------~~~~G~ailsr 70 (268)
T 1ako_A 1 MKFVSFNINGLRARPH---QLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ-------KGHYGVALLTK 70 (268)
T ss_dssp CEEEEEECSCGGGCHH---HHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEE-------TTEEEEEEEES
T ss_pred CEEEEEehhHHHHHHH---HHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeCC-------CCcceEEEEEe
Confidence 8999999999987555 3999999999999999999876655443344457998877532 35679999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEe----CcEEEEEEecCCCCCCc-h
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSED-T 155 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~----~~~~LinVY~P~~~~~~-~ 155 (627)
.+ ++....++.+. ..+.+++++.+++ +.|.|+|+|+|+..... +
T Consensus 71 ~~----------~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 119 (268)
T 1ako_A 71 ET----------PIAVRRGFPGD---------------------DEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHP 119 (268)
T ss_dssp SC----------CSEEEESSTTC---------------------CHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCT
T ss_pred cC----------cceeeeCCCCc---------------------ccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccc
Confidence 83 23333322100 0133567776654 47999999999876421 2
Q ss_pred HHHHHHHHHHHHHHHHHH---hcCCcEEEecccCCCCCcccccC-----------CCCCCCchHHHHHHHHHHHHcCCcc
Q 006881 156 VRIQFKLQFFHKRWEFLL---CQGRRIFVVGDLNIAPAAIDRCD-----------AGPDFAKNEFRIWFRSMLVESGGSF 221 (627)
Q Consensus 156 eR~~~k~~f~~~~~~~L~---~~g~~VII~GDFN~~~~~iD~~~-----------~~~~f~~~~~r~~l~~lL~~~g~~L 221 (627)
++...|..++..+.+.+. ..+.++||+||||+.+...|... ...+|.+.+ +.++..++ +.| |
T Consensus 120 ~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~l~-~~g--l 195 (268)
T 1ako_A 120 IKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWMDRLM-SWG--L 195 (268)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHH-HHHHHHHH-HTT--E
T ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHH-HHHHHHHh-cCC--C
Confidence 355566666655444443 35789999999999988877642 223455544 66777655 454 9
Q ss_pred cccccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcC
Q 006881 222 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 301 (627)
Q Consensus 222 ~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~ 301 (627)
+|+||.++|...+.||||+.+...++.|.+.||||||+++.+.. .+.++.|....+.
T Consensus 196 ~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~-------------~~~~~~i~~~~~~---------- 252 (268)
T 1ako_A 196 VDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAE-------------CCVETGIDYEIRS---------- 252 (268)
T ss_dssp EEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHT-------------TEEEEEECHHHHT----------
T ss_pred EEeEhhhCCCCCCCeeEeCCcCCccccCceEEEEEEEeCHHHHH-------------HHHhceechhhcC----------
Confidence 99999999987667999999887777778999999999987532 5677888764211
Q ss_pred CCCCCCCCCCCccceEEEEe
Q 006881 302 GGMSTRLEGSDHAPVYMCLG 321 (627)
Q Consensus 302 ~~~~~~~~~SDH~PV~~~l~ 321 (627)
...+|||+||+++|.
T Consensus 253 -----~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 253 -----MEKPSDHAPVWATFR 267 (268)
T ss_dssp -----SSSCCSBCCEEEEEC
T ss_pred -----CCCCCCcccEEEEcc
Confidence 136899999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=6.6e-34 Score=281.22 Aligned_cols=226 Identities=23% Similarity=0.452 Sum_probs=164.0
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||+|++...++ ..+.++|++++|||||||||+.....+.. +...||..+|... +..++.|||||+|
T Consensus 8 lri~t~Nv~g~~~~~~~-~~~~~~i~~~~~DIv~LQE~~~~~~~~~~--l~~~~y~~~~~~~-----~~~~~~Gvail~r 79 (238)
T 1vyb_A 8 ITILTLNINGLNSAIKR-HRLASWIKSQDPSVCCIQETHLTCRDTHR--LKIKGWRKIYQAN-----GKQKKAGVAILVS 79 (238)
T ss_dssp EEEEEEECSCCCSHHHH-HHHHHHHHHHCCSEEEEECCCCCTTSGGG--CCCTTCCEEEEEC-----CSSSSCCEEEEEC
T ss_pred ceEEEEecccCCchhhH-HHHHHHHHHcCCCEEEEecccCCCCCchh--HhhCCCCeEEEcc-----CCCCCceEEEEEe
Confidence 69999999999876643 35999999999999999999876655432 2346897644322 1123459999999
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEe----CcEEEEEEecCCCCCCchH
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSEDTV 156 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~----~~~~LinVY~P~~~~~~~e 156 (627)
+++ |+.... ...|.+||++.++. ..+.|+|+|+|+... +
T Consensus 80 ~~~---------~~~~~~-------------------------~~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~---~ 122 (238)
T 1vyb_A 80 DKT---------DFKPTK-------------------------IKRDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P 122 (238)
T ss_dssp TTC---------CCEEEE-------------------------EEECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H
T ss_pred CCC---------Cccccc-------------------------eeEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc---H
Confidence 852 332211 01356889887764 469999999998753 2
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 006881 157 RIQFKLQFFHKRWEFLLC-QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 235 (627)
Q Consensus 157 R~~~k~~f~~~~~~~L~~-~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~ 235 (627)
+|++++++.|.. .+.++||+||||+.+..+|... ..+...+ +.+|..++.+.| |.|+||..+|...+
T Consensus 123 ------~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~--l~d~~~~~~~~~~~- 190 (238)
T 1vyb_A 123 ------RFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRST--RQKVNKD-TQELNSALHQAD--LIDIYRTLHPKSTE- 190 (238)
T ss_dssp ------HHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTT--CCCCCHH-HHHHHHHHHHTT--EEEHHHHHCTTCCC-
T ss_pred ------HHHHHHHHHHHhccCCCEEEEccCCCCCCccccCC--CCCCcHH-HHHHHHHHhhCC--CEEhhHhhCCCCCc-
Confidence 234344444433 3689999999999888877653 2344433 678888887776 99999999998654
Q ss_pred cccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccc
Q 006881 236 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 315 (627)
Q Consensus 236 yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~P 315 (627)
||||+.+.+. +.||||||+++.+.. .+.++.|.+. .+|||+|
T Consensus 191 ~T~~~~~~~~-----~~rID~i~~s~~~~~-------------~~~~~~v~~~--------------------~~SDH~p 232 (238)
T 1vyb_A 191 YTFFSAPHHT-----YSKIDHIVGSKALLS-------------KCKRTEIITN--------------------YLSDHSA 232 (238)
T ss_dssp CSEEETTTTE-----EECCEEEEEEGGGGG-------------GEEEEEEECC--------------------SSSSSCE
T ss_pred eeEEcCCCCc-----ccceEEEEeCHHHHh-------------hhhhceeecC--------------------CCCCccc
Confidence 9999876443 679999999987643 5788888753 7899999
Q ss_pred eEEEEe
Q 006881 316 VYMCLG 321 (627)
Q Consensus 316 V~~~l~ 321 (627)
|.++|.
T Consensus 233 v~~~l~ 238 (238)
T 1vyb_A 233 IKLELR 238 (238)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999984
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.97 E-value=7.6e-31 Score=265.41 Aligned_cols=212 Identities=17% Similarity=0.141 Sum_probs=143.9
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||||++.+... +.++|++.+|||||||||+. ..||+ +.. . ++.||||+++
T Consensus 8 mki~s~Nvn~~r~~~~~---l~~~l~~~~~DIl~LQEt~~-----------~~gy~-~~~--------~-~~~gvail~~ 63 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE---LPSIARDLGLDIVLVQEQYS-----------MVGFL-AQC--------G-AHPKAGVYIR 63 (240)
T ss_dssp EEEEEEECTTCHHHHHT---HHHHHHHHTCSEEEEESCCT-----------TSSSE-ECC--------S-SSCSEEEEES
T ss_pred ceEEEEecCccHHHHHH---HHHHHHHcCCCEEEeecceE-----------cCCce-Eec--------c-CCCCEEEEEe
Confidence 69999999999987765 99999999999999999972 13777 321 1 2458999998
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEecCCCCCCchHHHHH
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (627)
.+. .|+....++ .+.+++++.++.+.++|+|+|+|++... .+
T Consensus 64 ~~~--------~~~~~~~~~-------------------------~~~~~~~i~i~~~~i~i~svY~P~~~~~-----~~ 105 (240)
T 2ei9_A 64 NRV--------LPCAVLHHL-------------------------SSTHITVVHIGGWDLYMVSAYFQYSDPI-----DP 105 (240)
T ss_dssp STT--------SCEEECGGG-------------------------CCSSEEEEEETTTTEEEEEEECCTTSCS-----HH
T ss_pred cCC--------cceeeeccc-------------------------CCCCEEEEEEeeccEEEEEEEcCCCCch-----hH
Confidence 731 243321111 2345678788778899999999998752 44
Q ss_pred HHHHHHHHHHHHHhcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCccccccc--ccCCCCCCcccc
Q 006881 161 KLQFFHKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR--SKHPERREAYTC 238 (627)
Q Consensus 161 k~~f~~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R--~~hP~~~~~yT~ 238 (627)
++.|++.+...+ .+.++||+||||+.+...+.......+...+ |.+....|. + ++|.+| .++|... .|||
T Consensus 106 ~~~~l~~l~~~~--~~~~~Ii~GDfN~~~~~w~~~~~~~~~~~~~-r~~~~~~l~--~--~~d~~~l~~~~~~~~-~~T~ 177 (240)
T 2ei9_A 106 YLHRLGNILDRL--RGARVVICADTNAHSPLWHSLPRHYVGRGQE-VADRRAKME--D--FIGARRLVVHNADGH-LPTF 177 (240)
T ss_dssp HHHHHHHHHHHT--TTSCEEEEEECCCCCGGGTCCHHHHSSSCHH-HHHHHHHHH--H--HHHHTTCEECCCTTC-CCSE
T ss_pred HHHHHHHHHHhc--CCCcEEEEEecccccccccCCCCCCCCcchh-hHHHHHHHH--H--HHHhcCCEecCCCCC-CceE
Confidence 556665543322 3579999999999875432110001233333 444445552 3 889998 4477533 5999
Q ss_pred CCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccceEE
Q 006881 239 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 318 (627)
Q Consensus 239 ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~PV~~ 318 (627)
|+.+. ++||||||+++.+. . .++.|.. ..+|||+||.+
T Consensus 178 ~s~~~-------~~rID~~l~s~~l~--------------~-~~~~i~~--------------------~~~SDH~Pv~~ 215 (240)
T 2ei9_A 178 STANG-------ESYVDVTLSTRGVR--------------V-SEWRVTN--------------------ESSSDHRLIVF 215 (240)
T ss_dssp EETTE-------EECCEEEEECTTCC--------------E-EEEEECS--------------------CCSSSBCCEEE
T ss_pred eCCCC-------ceEEEEEEecCccc--------------c-CCeEECC--------------------CCCCCcccEEE
Confidence 98642 69999999998753 1 4455542 27899999999
Q ss_pred EEeecC
Q 006881 319 CLGEVP 324 (627)
Q Consensus 319 ~l~~~~ 324 (627)
+|....
T Consensus 216 ~l~~~~ 221 (240)
T 2ei9_A 216 GVGGGT 221 (240)
T ss_dssp EEEC--
T ss_pred EECCCC
Confidence 998644
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.96 E-value=9.2e-28 Score=240.93 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=137.0
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEEEe
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIlsR 80 (627)
|||+||||||++..... +.++|++.+|||||||||+........ ...||..|+... ...|+.|||||+|
T Consensus 20 lri~s~Nv~~~~~~~~~---l~~~i~~~~~DIv~lQE~~~~~~~~~~---~~~gy~~~~~~~-----~~~~~~GvaIl~~ 88 (245)
T 1wdu_A 20 YRVLQANLQRKKLATAE---LAIEAATRKAAIALIQEPYVGGAKSMK---GFRGVRVFQSTA-----QGDGTVKAAIAVF 88 (245)
T ss_dssp EEEEEEECTTCHHHHHH---HHHHHHHHTCSEEEEESCCC------C---CCSSCEEEECCC-----CTTCCCCEEEEEC
T ss_pred eeeeeeeccccHHHHHH---HHHHHhhcCCCEEEEEcccccCCcccc---CCCcceEecccc-----ccCCCCCeEEEEE
Confidence 69999999999875553 999999999999999999976543321 245787655321 2234569999997
Q ss_pred eccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCc-EEEEE--eCcEEEEEEecCCCCCCchHH
Q 006881 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD--HGHFILFNVYGPRADSEDTVR 157 (627)
Q Consensus 81 ~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR-~viv~--~~~~~LinVY~P~~~~~~~eR 157 (627)
.. ++.... +. ..+.++. ++.+. .+.|.|+|+|+|+.... .
T Consensus 89 ~~----------~~~~~~-~~-----------------------~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~-~-- 131 (245)
T 1wdu_A 89 DH----------DLDVIQ-YP-----------------------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI-E-- 131 (245)
T ss_dssp CS----------SCEEEE-CT-----------------------TTCCSSEEEEEEECSSCEEEEEEEECCTTSCS-H--
T ss_pred CC----------CcceEE-ec-----------------------ccccCCEEEEEEEcCCCcEEEEEEEeCCCCCH-H--
Confidence 52 222211 10 0112232 22333 35799999999987641 1
Q ss_pred HHHHHHHHHHHHHHHHh--cCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccccCCCCCCc
Q 006881 158 IQFKLQFFHKRWEFLLC--QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 235 (627)
Q Consensus 158 ~~~k~~f~~~~~~~L~~--~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~ 235 (627)
.|+.. +..++. ...++||+||||+.+..++.. ..... +.+|..++...+ | +..+|. +.
T Consensus 132 -----~~~~~-l~~~~~~~~~~~~Ii~GDfN~~~~~~~~~-----~~~~~-~~~l~~~~~~~~--l----~~~~~~--~~ 191 (245)
T 1wdu_A 132 -----SYLEQ-IKRVERKMGPKRLIFGGDANAKSTWWGSK-----EDDAR-GDQLMGTLGELG--L----HILNEG--DV 191 (245)
T ss_dssp -----HHHHH-HHHHHHTTCSSSEEEEEECCCCCGGGTCS-----SCCHH-HHHHHHHHHHHT--C----EECCCS--CC
T ss_pred -----HHHHH-HHHHHHHhCCCcEEEEeccccCcccCCCC-----CcCcc-hHHHHHHHHHCC--c----EEecCC--CC
Confidence 22221 122222 457999999999987544321 11222 466777776665 3 445553 35
Q ss_pred cccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCCCCCccc
Q 006881 236 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 315 (627)
Q Consensus 236 yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~~SDH~P 315 (627)
||||+.+.+. +.++||||||+++.+.. .|.++.|... ..+|||+|
T Consensus 192 ~T~~~~~~~~---~~~~rID~i~~s~~~~~-------------~v~~~~v~~~-------------------~~~SDH~P 236 (245)
T 1wdu_A 192 PTFDTIRGGK---RYQSRVDVTFCTEDMLD-------------LIDGWRVDED-------------------LVSSDHNG 236 (245)
T ss_dssp CSEEC--------CCEECCEEEEECGGGBT-------------TEEEEEECTT-------------------SSSSSBCC
T ss_pred CcEECCCCCC---CCCCEEEEEEeChHHHh-------------hccceEEcCC-------------------CCCCCccc
Confidence 9999986532 34799999999987643 5788888653 37899999
Q ss_pred eEEEEee
Q 006881 316 VYMCLGE 322 (627)
Q Consensus 316 V~~~l~~ 322 (627)
|.++|..
T Consensus 237 v~~~l~l 243 (245)
T 1wdu_A 237 MVFNIRL 243 (245)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 9999974
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.95 E-value=5.3e-27 Score=251.12 Aligned_cols=230 Identities=16% Similarity=0.202 Sum_probs=141.8
Q ss_pred CEEEEEeccCcch--hhhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEE
Q 006881 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (627)
Q Consensus 1 mrIlTwNInGlr~--~~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (627)
|||+||||+|+.. ...|...|.++|+.++||||||||+... .+........+|..|+. +..++.|+|||
T Consensus 120 lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~--~~~~l~~~~~~y~~~~~-------~~~~~~G~aIl 190 (362)
T 4gew_A 120 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR--DLAPIDKLQSLYKIYYS-------NKGCQYYTAIL 190 (362)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECST--TCHHHHGGGGTEEEEES-------STTSSSEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChh--HhHHHHHhcCCceEEeC-------CCCCCceEEEE
Confidence 7999999999843 3344456999999999999999998532 22211122345555543 22345699999
Q ss_pred EeeccCCCCcccccceeeee-cccccccccccccccCccccccccccccCCCCc-EEEE--Ee--CcEEEEEEecCCCCC
Q 006881 79 CRVKSPFSSTEVALPVAAEE-GFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVIT--DH--GHFILFNVYGPRADS 152 (627)
Q Consensus 79 sR~~~~f~~~~~~~Pi~aee-gltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR-~viv--~~--~~~~LinVY~P~~~~ 152 (627)
+|++ +.... ...... ....+| ++.+ .. ..|.|+|+|.++...
T Consensus 191 sk~~-----------i~~~~~~~~~~~---------------------~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~ 238 (362)
T 4gew_A 191 VSKM-----------FDVEKHDVIHFQ---------------------NSGMYRTLQILEGSIGGLKVFLLNTHLESTRE 238 (362)
T ss_dssp EETT-----------EEEEEEEEEECT---------------------TCSSCCEEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred Eecc-----------CccccccccCCC---------------------CCcccceEEEEEEEECCEEEEEEEecCCcccc
Confidence 9973 22211 110000 012233 2222 22 369999999998765
Q ss_pred CchHHHHHHHHHHHHHHHHHH--hcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccccCC
Q 006881 153 EDTVRIQFKLQFFHKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 230 (627)
Q Consensus 153 ~~~eR~~~k~~f~~~~~~~L~--~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP 230 (627)
...+|.. ++..+...+..+. ..+.+|||+||||..+...+.. .. +|.|+|+..++
T Consensus 239 ~~~~R~~-Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~--------------------~~--gl~Da~~~~~~ 295 (362)
T 4gew_A 239 HRPQRCA-QFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEAAGS 295 (362)
T ss_dssp GHHHHHH-HHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHHTTC
T ss_pred chhHHHH-HHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccchh--------------------cc--hHHHHHHHhCC
Confidence 3333432 2333333333332 4578999999999876543221 02 49999999887
Q ss_pred CCCCccccCCCCCCCccCC--CcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCC
Q 006881 231 ERREAYTCWPSNTGAEQFN--YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRL 308 (627)
Q Consensus 231 ~~~~~yT~ws~~~~a~~~n--~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~ 308 (627)
.....||||..+......+ .+.||||||+++.+ .+..+.+....+. . ....
T Consensus 296 ~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l---------------~~~~~~vi~~~ri------~------~~~~ 348 (362)
T 4gew_A 296 DNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRI------R------SCLC 348 (362)
T ss_dssp CGGGCCSEETTTCTTSCCSSCCEECCEEEEEESSC---------------CEEEEEEECCSCC------T------TTSS
T ss_pred CCCCCcCcccccCcccccCCCCCcceEEEEEcCCc---------------ceeEEEEEeeeec------C------CCCC
Confidence 6555699998876654433 44799999999875 3455555432110 0 0123
Q ss_pred CCCCccceEEEEe
Q 006881 309 EGSDHAPVYMCLG 321 (627)
Q Consensus 309 ~~SDH~PV~~~l~ 321 (627)
..|||+||+++|.
T Consensus 349 ~pSDH~pV~A~FS 361 (362)
T 4gew_A 349 FPSDHWAINATFF 361 (362)
T ss_dssp CSCSSCEEEEEEE
T ss_pred CCCcccCEEEEEc
Confidence 5799999999995
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.94 E-value=1.9e-25 Score=221.74 Aligned_cols=231 Identities=16% Similarity=0.195 Sum_probs=137.4
Q ss_pred CEEEEEeccCcchh--hhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEE
Q 006881 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (627)
Q Consensus 1 mrIlTwNInGlr~~--~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (627)
|||+||||+|+... ..+...|.++|+.++||||||||+.-. .+. .+....+|..++.. +..+..|++||
T Consensus 14 l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~--~~~-~l~~~~~~~~~~~~------~~~~~~g~~il 84 (256)
T 4fva_A 14 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR--DLA-PIDKLQSLYKIYYS------NKGCQYYTAIL 84 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECST--TCH-HHHGGGGTEEEEES------STTSSSEEEEE
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChh--HhH-HHHHhcCCceEeec------CCCCCcceEEE
Confidence 69999999998542 233346999999999999999999532 222 23333444444432 22344599999
Q ss_pred EeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCc-EEEE--Ee--CcEEEEEEecCCCCCC
Q 006881 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVIT--DH--GHFILFNVYGPRADSE 153 (627)
Q Consensus 79 sR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR-~viv--~~--~~~~LinVY~P~~~~~ 153 (627)
++.++ ++.....+ .+. ....++ .+.+ +. ..|.|+|+|.+.....
T Consensus 85 ~~~~~---------~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~ 133 (256)
T 4fva_A 85 VSKMF---------DVEKHDVI-HFQ---------------------NSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 133 (256)
T ss_dssp EETTC---------EEEEEEEE-ECT---------------------TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred Eeecc---------cceecccc-cCC---------------------CCcccceeEEEEEEeCCeEEEEEEecCCCCCcc
Confidence 99741 22211111 000 011222 2222 22 4699999999887653
Q ss_pred chHHHHHHHHHHHHHHHHHH--hcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccccCCC
Q 006881 154 DTVRIQFKLQFFHKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 231 (627)
Q Consensus 154 ~~eR~~~k~~f~~~~~~~L~--~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 231 (627)
..+|... +..+...+..+. ..+.++||+||||+.+...... .. +|.|+|+..++.
T Consensus 134 ~~~~~~q-~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~~--------------------~~--~~~d~~~~~~~~ 190 (256)
T 4fva_A 134 RPQRCAQ-FGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEAAGSD 190 (256)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHHTTCC
T ss_pred hHHHHHH-HHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhhh--------------------hc--chhhHHHHhCCC
Confidence 3333322 222222233332 4578999999999865432210 02 389999988776
Q ss_pred CCCccccCCCCCCCccC--CCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCC
Q 006881 232 RREAYTCWPSNTGAEQF--NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 309 (627)
Q Consensus 232 ~~~~yT~ws~~~~a~~~--n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~ 309 (627)
....|||+......... ....||||||+++.+ .+.++.+....+- . .....
T Consensus 191 ~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~---------------~~~~~~~~~~~~~-~-----------~~~~~ 243 (256)
T 4fva_A 191 NKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRI-R-----------SCLCF 243 (256)
T ss_dssp GGGCCSEETTTCCSSCSCCSCEECCEEEEEESSC---------------CEEEEEEECCSCC-T-----------TTCSC
T ss_pred CCCCcccccccCcccccCCCCCcCeEEEEEcCCc---------------eeeEEEEEeeEec-C-----------CCCCC
Confidence 55569998776544322 245799999999875 3455555432110 0 01235
Q ss_pred CCCccceEEEEe
Q 006881 310 GSDHAPVYMCLG 321 (627)
Q Consensus 310 ~SDH~PV~~~l~ 321 (627)
.|||+||+++|.
T Consensus 244 ~SDH~pv~a~Fs 255 (256)
T 4fva_A 244 PSDHWAINATFF 255 (256)
T ss_dssp SCSSCEEEEEEE
T ss_pred cCcccCEEEEEc
Confidence 799999999995
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.92 E-value=3e-24 Score=215.67 Aligned_cols=238 Identities=18% Similarity=0.174 Sum_probs=137.5
Q ss_pred CEEEEEeccCcchhh--hhhhHHHHHHhhcCCcEEEEecccchhc-----------c----hhhHHHhhc--CCcEEeec
Q 006881 1 MKIVTYNVNGLRQRV--SQFGSLRKLLDSFDADIICFQETKLRRQ-----------E----LKSDLVMAD--GYESFFSC 61 (627)
Q Consensus 1 mrIlTwNInGlr~~~--~~~~~l~~~L~~l~aDIIcLQETk~t~~-----------~----l~~~l~~~~--GY~~~fs~ 61 (627)
|||+||||+++.... .+...|.++|+.++||||||||+..... . +.+.+.... +|..++..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~ 83 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSN 83 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEE
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Confidence 799999998764321 1223588999999999999999964321 0 222232222 37665433
Q ss_pred cccCCCCCCcceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCc-EEEEEe---
Q 006881 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH--- 137 (627)
Q Consensus 62 ~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR-~viv~~--- 137 (627)
... ....+..|+|||+|.+ +.....+. +... + + ....+.| ++.+..
T Consensus 84 ~~~--~~~~~~~g~ailsr~~-----------~~~~~~~~-~~~~--~-------~-------~~~~~~r~~~~~~~~~~ 133 (266)
T 3teb_A 84 SHI--GFGKYNEGVAVITRHK-----------IKAEDEFY-CTFA--Q-------S-------VRTISARRIVSITINYE 133 (266)
T ss_dssp EEE--CSTTEEEEEEEEESSC-----------CSEEEEEE-CSSC--C-------C-------TTCTTCCEEEEEEEEET
T ss_pred ccc--CccccCCeEEEEECce-----------ecCceeEE-eCCC--C-------C-------CCCcccceEEEEEEEeC
Confidence 211 1123345999999873 32221110 0000 0 0 0011223 333332
Q ss_pred -CcEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHH
Q 006881 138 -GHFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE 216 (627)
Q Consensus 138 -~~~~LinVY~P~~~~~~~eR~~~k~~f~~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~ 216 (627)
..|.|+|+|.+........|.. .+..+++.+ ..+.++||+||||..+.. . ...++.++ .
T Consensus 134 ~~~~~v~~~Hl~~~~~~~~~r~~----q~~~l~~~~-~~~~~~il~GDfN~~~~~-----------~---~~~~~~l~-~ 193 (266)
T 3teb_A 134 GQDIEFYSCHMNLPNCETEDMGK----NIQTILNRT-QNSNLKILMGDFNTDAIG-----------N---VAAYENIL-S 193 (266)
T ss_dssp TEEEEEEEEECCCTTCTTCCHHH----HHHHHHTSS-CSCCEEEEEEECCCCTTT-----------C---HHHHHHHH-T
T ss_pred CeEEEEEEecCCCccCChHHHHH----HHHHHHHHH-hcCCcEEEEeECCCCCCC-----------C---CcHHHhhc-c
Confidence 4699999999886432233322 222222222 237899999999986521 0 12344443 2
Q ss_pred cCCcccccccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCC
Q 006881 217 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 296 (627)
Q Consensus 217 ~g~~L~D~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~ 296 (627)
. +|.|+|+..++...+ |||............+.||||||+++.+ .+..+.+.....
T Consensus 194 ~--~l~d~~~~~~~~~~~-~t~~~~~~~~~~~~~~~riD~i~~s~~~---------------~~~~~~v~~~~~------ 249 (266)
T 3teb_A 194 Q--GLFDTYVMAEKKDDG-ITVDKSIHGWDNDKAKKRLDYIFSNKEL---------------KVKESKVIFNNK------ 249 (266)
T ss_dssp T--TCEEHHHHCSEECCC-CCEECC------CTTEECCEEEEESSCC---------------CEEEEEEESSSS------
T ss_pred c--cccchHHhhccccCC-ccccCccCCcCcCCcCCeeEEEEeCCCe---------------EEEEEEEEeCCC------
Confidence 3 499999999988665 8885443332223467899999999875 467788876411
Q ss_pred CCCcCCCCCCCCCCCCccceEEEEe
Q 006881 297 APRWKGGMSTRLEGSDHAPVYMCLG 321 (627)
Q Consensus 297 ~~~w~~~~~~~~~~SDH~PV~~~l~ 321 (627)
.....|||+||.++|.
T Consensus 250 ---------~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 250 ---------NKEIVSDHFGIEVKIE 265 (266)
T ss_dssp ---------SSCCCSSSCEEEEEEC
T ss_pred ---------CCCCcCCccCEEEEEE
Confidence 0136799999999985
No 15
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.91 E-value=1.7e-23 Score=204.24 Aligned_cols=235 Identities=15% Similarity=0.158 Sum_probs=134.4
Q ss_pred CEEEEEeccCcchh--hhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEE
Q 006881 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (627)
Q Consensus 1 mrIlTwNInGlr~~--~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (627)
|||+||||+|+... ..+...|.++|++++||||||||+.. ..+ ..+....++..++... ..++.|++++
T Consensus 4 l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~-~~l~~~~~~~~~~~~~------~~~~~~~~~~ 74 (250)
T 4f1h_A 4 LSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIP--AYV-QYLKKRAVSYLFFEGS------DDGYFTGIML 74 (250)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHH-HHHHHHCTTEEEEESC------SSSSEEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCH--HHH-HHHHHhccCceeeccc------ccccCceeEE
Confidence 79999999998542 22334699999999999999999963 222 2234445555555432 2344577777
Q ss_pred EeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEE-EE----eCcEEEEEEecCCCCCC
Q 006881 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD----HGHFILFNVYGPRADSE 153 (627)
Q Consensus 79 sR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~vi-v~----~~~~~LinVY~P~~~~~ 153 (627)
.+.+ .|+.....+. . .....++.++ +. ...+.++|+|.+.....
T Consensus 75 ~~~~---------~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~ 123 (250)
T 4f1h_A 75 RKSR---------VKFLESEIIC-F---------------------PTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ 123 (250)
T ss_dssp ETTT---------CEEEEEEEEE-C---------------------TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG
T ss_pred eecc---------ccceeccccc-c---------------------cCccccceEEEEEEecCCcEEEEecccccccccc
Confidence 6653 2332222110 0 0112333332 22 24689999999876643
Q ss_pred chHHHHHHHHHHHHHHHHHHh--cCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccccCCC
Q 006881 154 DTVRIQFKLQFFHKRWEFLLC--QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 231 (627)
Q Consensus 154 ~~eR~~~k~~f~~~~~~~L~~--~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 231 (627)
..+|. ..+..+++.+.+ .+.+|||+||||+.+...+... + ....+.|+|+..++.
T Consensus 124 ~~~r~----~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~~ 180 (250)
T 4f1h_A 124 SQERT----KQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVG-----------------G--LPAGVCDVWEQLGKQ 180 (250)
T ss_dssp HHHHH----HHHHHHHHHHHHSCTTEEEEEEEECCCCHHHHHTTT-----------------S--SCTTEEEHHHHTTCC
T ss_pred HHHHH----HHHHHHHHHHHhcCCCCCEEEEEecCCCCcchhhhh-----------------h--ccccchHHHHHhcCC
Confidence 33332 223333344432 4578999999997654322110 0 112478888888877
Q ss_pred CCCccccCCCCCC--CccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCCC
Q 006881 232 RREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 309 (627)
Q Consensus 232 ~~~~yT~ws~~~~--a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~~ 309 (627)
....++|+..... ....+.+.||||||+++..... . ..+....+....+ . .....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~--~--------~~~~~~~~~~~~~------~-------~~~~~ 237 (250)
T 4f1h_A 181 EHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAP--P--------VTPDHMALIGMEK------L-------DCGRY 237 (250)
T ss_dssp GGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSC--C--------CEEEEEEEECCSC------C-------TTSSC
T ss_pred ccCCcccccccCCCCCcCCCCCccEEEEEEeCccccc--c--------eeeeEEEEecccc------c-------CCCCC
Confidence 6655666554432 2233456899999999865321 0 0233333332211 0 01236
Q ss_pred CCCccceEEEEe
Q 006881 310 GSDHAPVYMCLG 321 (627)
Q Consensus 310 ~SDH~PV~~~l~ 321 (627)
.|||+||+++|+
T Consensus 238 ~SDH~pv~a~f~ 249 (250)
T 4f1h_A 238 TSDHWGIYCTFN 249 (250)
T ss_dssp SCSBCEEEEEEE
T ss_pred CCcccCEEEEEe
Confidence 799999999996
No 16
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.91 E-value=1.2e-23 Score=208.55 Aligned_cols=234 Identities=16% Similarity=0.139 Sum_probs=130.4
Q ss_pred CEEEEEeccCcchh--hhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceEEEEE
Q 006881 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (627)
Q Consensus 1 mrIlTwNInGlr~~--~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysGVAIl 78 (627)
|||+||||+|+... ..|...|.++|++++||||||||+.- ..+. .+....++..++. . +..++ |.+++
T Consensus 10 l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~~-~l~~~~~~~~~~~-~-----~~~~~-~~~~l 79 (256)
T 4gz1_A 10 ISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIP--PYCA-YLKKRAASYTIIT-G-----NEEGY-FTAIL 79 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHHH-HHHHHCTTEEEEE-S-----CSSSS-EEEEE
T ss_pred EEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCH--HHHH-HHHhhccccceee-c-----cccCC-ceEEE
Confidence 79999999998643 23334699999999999999999852 2222 2222223222332 1 23344 55666
Q ss_pred EeeccCCCCcccccceeeee-cccccccccccccccCccccccccccccCCCCcE-EEEE----eCcEEEEEEecCCCCC
Q 006881 79 CRVKSPFSSTEVALPVAAEE-GFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC-VITD----HGHFILFNVYGPRADS 152 (627)
Q Consensus 79 sR~~~~f~~~~~~~Pi~aee-gltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~-viv~----~~~~~LinVY~P~~~~ 152 (627)
++.. ++.... ..... .....++. +.+. ...|.|+|+|.+....
T Consensus 80 ~~~~----------~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~ 128 (256)
T 4gz1_A 80 LKKG----------RVKFKSQEIIPF---------------------PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE 128 (256)
T ss_dssp EETT----------TEEEEEEEEEEC---------------------TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG
T ss_pred EEec----------cccceecccccC---------------------CcccccceEEEEEEEeCCEEEEEEeeccccccc
Confidence 6552 222211 11000 00112222 2222 2469999999987654
Q ss_pred CchHHHHHHHHHHHHHHHHHH--hcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccccCC
Q 006881 153 EDTVRIQFKLQFFHKRWEFLL--CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 230 (627)
Q Consensus 153 ~~~eR~~~k~~f~~~~~~~L~--~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP 230 (627)
...+|. ..+..+++.+. ..+.+|||+||||+.+...+. . .+ ...++.|+|+..++
T Consensus 129 ~~~~~~----~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~----------------~-~~--~~~~~~~~~~~~~~ 185 (256)
T 4gz1_A 129 HSAERI----RQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIK----------------C-GG--LPDNVFDAWEFLGK 185 (256)
T ss_dssp GHHHHH----HHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHHH----------------H-TC--SCTTEEEHHHHTTC
T ss_pred chhhhh----HHHHHHhhhhhhccCcceEEEeCccCCCcchhhh----------------h-hh--ccchhhhHHHHhcC
Confidence 323332 22223333343 346799999999975432111 0 11 12248899998876
Q ss_pred CCCCccccCCCCCC--CccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCCC
Q 006881 231 ERREAYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRL 308 (627)
Q Consensus 231 ~~~~~yT~ws~~~~--a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~~ 308 (627)
.....|||+..... ....+.+.||||||+++.... + .+..+++....+ + ....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~----~--------~~~~~~~~~~~~------~-------~~~~ 240 (256)
T 4gz1_A 186 PKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGH----L--------IPQSLDLVGLEK------L-------DCGR 240 (256)
T ss_dssp CGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-CS----E--------EEEEEEEECCSC------C-------TTSS
T ss_pred CCCCCcccccCCCCccccCCCCCccEEEEEEECCccc----e--------eeeEEEEEeccc------c-------CCCC
Confidence 65545776554332 234567789999999876421 1 234444433211 0 1124
Q ss_pred CCCCccceEEEEeec
Q 006881 309 EGSDHAPVYMCLGEV 323 (627)
Q Consensus 309 ~~SDH~PV~~~l~~~ 323 (627)
.+|||+||+++|.+.
T Consensus 241 ~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 241 FPSDHWGLLCTLNVV 255 (256)
T ss_dssp CSCSBCEEEEEEEEC
T ss_pred CCCccccEEEEEEEE
Confidence 679999999999863
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.91 E-value=1.2e-22 Score=204.15 Aligned_cols=239 Identities=18% Similarity=0.136 Sum_probs=138.9
Q ss_pred CEEEEEeccCcchhh------hhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceE
Q 006881 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSG 74 (627)
Q Consensus 1 mrIlTwNInGlr~~~------~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysG 74 (627)
|||+||||++.+..- .+...|.++|+.++||||||||+.... + ..+....||..+.... . .+. +..|
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~--~-~~l~~~l~y~~~~~~~-~--~~~-~~~g 73 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQ--V-RDLKAYTTFTCLSAER-E--GDG-QGEG 73 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHH--H-HHHHHHSSSEEEEEES-S--SSS-CSCE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHH--H-HHHHhcCCCcEEEecc-c--CCC-CCce
Confidence 799999999886542 223459999999999999999997432 2 2233445996554432 1 122 3359
Q ss_pred EEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEE---EEe----CcEEEEEEec
Q 006881 75 VATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI---TDH----GHFILFNVYG 147 (627)
Q Consensus 75 VAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~vi---v~~----~~~~LinVY~ 147 (627)
+|||+|.. ..|+.....+ .+... |... +. ..-..+.|.++ ++. ..|.|+|+|.
T Consensus 74 ~ail~r~~--------~~~~~~~~~~-~l~~~--~~~~-~~--------~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl 133 (257)
T 3l1w_A 74 LAILYNEQ--------KVQAIDTGYF-WLSET--PQQP-SI--------HPEAGCPRIALWGLFKETTQNTPFLVINVHL 133 (257)
T ss_dssp EEEEECTT--------TEEEEEEEEE-ESSSS--TTSS-CC--------CTTCSSCCEEEEEEEEETTCSSCEEEEEEEC
T ss_pred EEEEEEcc--------eEEEEecCeE-ECcCC--CCcc-cc--------cccccccceeEEEEEEEcCCCCEEEEEEeCC
Confidence 99999952 1233222211 01000 0000 00 00113455443 232 4699999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccccccc
Q 006881 148 PRADSEDTVRIQFKLQFFHKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 227 (627)
Q Consensus 148 P~~~~~~~eR~~~k~~f~~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~ 227 (627)
+..+. ..|...- ..+.+.++..+..+ ++||+||||..+.. . .++ +|. . +|.|+|+.
T Consensus 134 ~~~~~--~~r~~q~-~~l~~~i~~~~~~~-pvil~GDfN~~~~~------------~----~~~-~l~-~--~l~d~~~~ 189 (257)
T 3l1w_A 134 DHISA--HARLAGM-TVILEELHDKIAQY-PTLLMGDFNAESGE------------E----VHQ-LVQ-K--KFQDSKNL 189 (257)
T ss_dssp CSSCH--HHHHHHH-HHHHHHTHHHHHHS-CEEEEEECCCCTTS------------H----HHH-HHT-T--TCEEGGGT
T ss_pred CCCCH--HHHHHHH-HHHHHHHHHHcCCC-CEEEEeeCCCCCCc------------H----HHH-Hhh-h--hccchhhh
Confidence 87642 3333221 11222233112334 99999999986532 1 122 332 2 49999998
Q ss_pred cCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCCC
Q 006881 228 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTR 307 (627)
Q Consensus 228 ~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~~ 307 (627)
.++... .+||..... .++.+.+.||||||+ +.+ .+.++.+..... ..
T Consensus 190 ~~~~~~-~~t~~~~~~-~~~~~~~~riD~i~~-~~~---------------~~~~~~v~~~~~---------------~~ 236 (257)
T 3l1w_A 190 ATHYGP-RGTFQNFTY-TKPWAELEEIDYIYV-KGW---------------QVQQTASLTDSI---------------DG 236 (257)
T ss_dssp SEEESC-SCCBCTTCT-TCCGGGCBCCEEEEE-ESE---------------EEEEEEECCCCB---------------TT
T ss_pred hcccCC-CCcccCCcc-cCCCCCCCceeEEEE-CCc---------------EEEEEEEeccCc---------------CC
Confidence 877633 477755432 234456799999999 553 567777765310 11
Q ss_pred CCCCCccceEEEEeec
Q 006881 308 LEGSDHAPVYMCLGEV 323 (627)
Q Consensus 308 ~~~SDH~PV~~~l~~~ 323 (627)
..+|||+||.++|...
T Consensus 237 ~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 237 RFPSDHFPLEAEVAGE 252 (257)
T ss_dssp BCSSSBCCEEEEEEEC
T ss_pred cccCCcceEEEEEEEE
Confidence 3689999999999864
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.89 E-value=4.8e-22 Score=201.08 Aligned_cols=245 Identities=18% Similarity=0.175 Sum_probs=139.7
Q ss_pred CEEEEEeccCcchh------hhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHhh-cCCcEEeeccccCCCCCCcce
Q 006881 1 MKIVTYNVNGLRQR------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA-DGYESFFSCTRTSDKGRTGYS 73 (627)
Q Consensus 1 mrIlTwNInGlr~~------~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~-~GY~~~fs~~~~~~~gr~Gys 73 (627)
|||+||||++.+.. ..+...|.++|+.++||||||||+.... +. .+... .+|..+.... . .+..+..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~--~~-~l~~~l~~y~~~~~~~-~--~~~~~g~ 77 (267)
T 3g6s_A 4 VRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ--FQ-DLRAGLPEYDGIGVGR-D--DGKTAGE 77 (267)
T ss_dssp EEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH--HH-HHHHHCTTEEEECCCT-T--TSSSSSC
T ss_pred EEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHH--HH-HHHHhccCCcEEEecC-C--CCCcCCc
Confidence 69999999987631 1222459999999999999999998432 21 23332 5777654322 1 1222224
Q ss_pred EEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEE---EEe----CcEEEEEEe
Q 006881 74 GVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI---TDH----GHFILFNVY 146 (627)
Q Consensus 74 GVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~vi---v~~----~~~~LinVY 146 (627)
|+|||+|.. ..|+.....+ .+... +... +.. ..-..+.|.++ ++. ..|.|+|+|
T Consensus 78 ~~ail~~~s--------~~~~~~~~~~-~l~~~--~~~~-~~~-------~~~~~~~R~~~~~~~~~~~~~~~~~v~~~H 138 (267)
T 3g6s_A 78 YAPLFYRKD--------KYEVLDSNTF-WLAEN--PDSV-GMM-------GWDAVCVRIATWAKFKDKATGKIFMAVNTH 138 (267)
T ss_dssp BCCEEEETT--------TEEEEEEEEE-ESSSC--TTST-TCC-------CTTCSSCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeEEEEEcc--------ceEEEecccE-ecCCC--CCcc-ccc-------cccccCcceEEEEEEEEcCCCCEEEEEEeC
Confidence 699998752 1344332221 01000 0000 000 00112445332 232 369999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHhcCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCccccccc
Q 006881 147 GPRADSEDTVRIQFKLQFFHKRWEFLLCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 226 (627)
Q Consensus 147 ~P~~~~~~~eR~~~k~~f~~~~~~~L~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R 226 (627)
.+.... ..|.... ..+.+.++.+. .+.++||+||||..+... .++ .|...+..|.|+|+
T Consensus 139 l~~~~~--~~R~~q~-~~l~~~l~~~~-~~~pvIl~GDfN~~~~~~----------------~~~-~l~~~~~~l~d~~~ 197 (267)
T 3g6s_A 139 FDHVGE--EARRQSA-LLIIRKIKEIV-GERPAVVTGDFNVTDASD----------------AYE-TITTNEFVMKDAYK 197 (267)
T ss_dssp CCSSCH--HHHHHHH-HHHHHHHHHHT-TTSCEEEEEECSSCTTSH----------------HHH-HHHSSSSCCEEHHH
T ss_pred CCCCCH--HHHHHHH-HHHHHHHHHhc-CCCCEEEEeECCCCCCCH----------------HHH-HhhcCCcchhhhHh
Confidence 987542 3343221 22222333332 378999999999865431 122 23222113999999
Q ss_pred ccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCCcccccccccccccccceeeeEeecccccCCCCCCCCcCCCCCC
Q 006881 227 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST 306 (627)
Q Consensus 227 ~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l~~~~~~l~~~~~~~~~v~~~~I~~~~~~~~~~~~~~w~~~~~~ 306 (627)
..++.....|||....... .+.+.||||||+++.+ .+..+.+.... ..
T Consensus 198 ~~~~~~~~~~T~~~~~~~~--~~~~~riD~I~~s~~~---------------~~~~~~v~~~~---------------~~ 245 (267)
T 3g6s_A 198 TAARVTGVDYTFHDFARIP--AEDCEKIDFIFVTPQV---------------LVKSCEIPAEV---------------PE 245 (267)
T ss_dssp HCSEEEECSCSBCTTTTSC--GGGCCCCEEEEECTTS---------------EEEEEEECCCC---------------SS
T ss_pred hhccccCCCCCEeCCCCCC--CCCCCcEeEEEeCCCc---------------eEEEEEEecCC---------------CC
Confidence 8874322247887654321 3457899999999875 57788887641 00
Q ss_pred CCCCCCccceEEEEeecC
Q 006881 307 RLEGSDHAPVYMCLGEVP 324 (627)
Q Consensus 307 ~~~~SDH~PV~~~l~~~~ 324 (627)
. ..|||+||.+++...+
T Consensus 246 ~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 246 A-LLSDHNPQLADLELEH 262 (267)
T ss_dssp S-CCCSBCCEEEEEEEC-
T ss_pred C-CCCCcccEEEEEEecc
Confidence 2 5799999999997643
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.86 E-value=7.3e-21 Score=195.48 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=108.7
Q ss_pred CEEEEEeccCcchh-------hhhhhHHHHHHhhcCCcEEEEecccchh--cchhhHHHhhcCCcEEeeccc-c--CC--
Q 006881 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTR-T--SD-- 66 (627)
Q Consensus 1 mrIlTwNInGlr~~-------~~~~~~l~~~L~~l~aDIIcLQETk~t~--~~l~~~l~~~~GY~~~fs~~~-~--~~-- 66 (627)
|||+||||++++.. ..+...+...|...+||||||||+.... ..+.+.+ ..+|...+.... . .+
T Consensus 11 lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 88 (301)
T 1zwx_A 11 FKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNL--REMYPHQTPVIGRSKHGWDK 88 (301)
T ss_dssp CEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTTSCSTTCSE
T ss_pred eEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHH--hhcCCccccccCCccccccc
Confidence 79999999987431 1222335556788999999999997543 1222111 223332111100 0 00
Q ss_pred ------CCCCcceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCc-EEEEEe--
Q 006881 67 ------KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH-- 137 (627)
Q Consensus 67 ------~gr~GysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR-~viv~~-- 137 (627)
....+..|||||+|. |+...+.+. +.. . .+.+ ..+.| ++.+..
T Consensus 89 ~~g~~~~~~~~~~G~ailSr~-----------pi~~~~~~~-~~~---~---~~~~----------~~~~r~~~~~~~~~ 140 (301)
T 1zwx_A 89 TEGNYSNFALEDGGVAVVSQW-----------PIVEKSQHI-FQR---G---GGAD----------RLSNKGFAYVKIMK 140 (301)
T ss_dssp EEC-----CCBCCCCEEEESS-----------CEEEEEEEE-CSC---C---CGGG----------GGBCCEEEEEEEEE
T ss_pred cccccccccccCCCEEEEecC-----------CcccceEEE-ecC---C---CCcc----------cccCCCeEEEEEEE
Confidence 011244699999997 443322110 000 0 0000 01223 333332
Q ss_pred --CcEEEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHH----hcCCcEEEecccCCCCCcccccCCCCCCCchHHHHH
Q 006881 138 --GHFILFNVYGPRADSED--TVRIQFKLQFFHKRWEFLL----CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW 209 (627)
Q Consensus 138 --~~~~LinVY~P~~~~~~--~eR~~~k~~f~~~~~~~L~----~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~ 209 (627)
..|.|+|+|.++..... ......|...+..+.+.+. ..+.++||+||||..+... .
T Consensus 141 ~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~~----------------~ 204 (301)
T 1zwx_A 141 NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTD----------------E 204 (301)
T ss_dssp TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSH----------------H
T ss_pred CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCcH----------------H
Confidence 36999999998764311 1122333333333333332 2467999999999876531 2
Q ss_pred HHHHHHHcCCccc--ccccccCCCCCCccccCCCCC----CCccCCCcceEEEEEEeCCC
Q 006881 210 FRSMLVESGGSFF--DVFRSKHPERREAYTCWPSNT----GAEQFNYGTRIDHILCAGPC 263 (627)
Q Consensus 210 l~~lL~~~g~~L~--D~~R~~hP~~~~~yT~ws~~~----~a~~~n~gsRIDyILvs~~l 263 (627)
++.++...+ +. |+|+- . .|||..... ..++.+.+.||||||+++..
T Consensus 205 ~~~l~~~~~--~~~~d~~~g-----~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~~~~~ 256 (301)
T 1zwx_A 205 YHDMLKLLN--VSSPANFNG-----Q-MATWDPTTNSMLKESYPKAAPEYLDYIFVENGH 256 (301)
T ss_dssp HHHHHHHHT--BCCCTTCCT-----T-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTS
T ss_pred HHHHHHHcC--CCCCccccC-----C-CceECCccCccccccCCCCCcceEeEEEEeCCC
Confidence 344454444 55 88872 1 377743211 01222347899999999874
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=6.7e-20 Score=189.46 Aligned_cols=213 Identities=18% Similarity=0.225 Sum_probs=113.6
Q ss_pred CEEEEEeccCcchh--------hhhhhHHHHHHhhcCCcEEEEecccchhcchhhHHHh-hcCCcEEeeccccCCCCCCc
Q 006881 1 MKIVTYNVNGLRQR--------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVM-ADGYESFFSCTRTSDKGRTG 71 (627)
Q Consensus 1 mrIlTwNInGlr~~--------~~~~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~-~~GY~~~fs~~~~~~~gr~G 71 (627)
|||+||||+..+.. ..+...|.++|..++||||||||+... .+. .+.. ..+|..+. ..+. .+...
T Consensus 7 lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~~-~l~~~l~~y~~~~-~~~~--~g~~~ 80 (298)
T 3mpr_A 7 LTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLH--QLK-DMKEALPGYDYIG-VGRD--DGKDK 80 (298)
T ss_dssp EEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHH--HHH-HHHHHSTTEEEEC-CCTT--TSSSS
T ss_pred EEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHH--HHH-HHHHhCCCCcEEE-EecC--CCCCC
Confidence 69999999765431 122245999999999999999999732 222 2222 24565443 2221 12112
Q ss_pred ceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEE-E--EE----eCcEEEEE
Q 006881 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-I--TD----HGHFILFN 144 (627)
Q Consensus 72 ysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~v-i--v~----~~~~~Lin 144 (627)
..|+|||+|.. ..|+.....+ .+... |... +.+ .-....|.+ . ++ ...|.|+|
T Consensus 81 g~~~aily~~s--------r~~i~~~~~~-~l~~~--p~~~-~~~--------~~~~~~R~~~~~~~~~~~~g~~~~v~~ 140 (298)
T 3mpr_A 81 GEHSAIFYRTD--------KFDIVEKGDF-WLSET--PDVP-SKG--------WDAVLPRICSWGHFKCKDTGFEFLFFN 140 (298)
T ss_dssp SCBCCEEEETT--------TEEEEEEEEE-ESSSS--TTSS-CCC--------TTCSSCCEEEEEEEEETTTCCEEEEEE
T ss_pred CceeEEEEecC--------ceEEEeccEE-EccCC--CCcc-Ccc--------cccccCceeEEEEEEEcCCCCEEEEEE
Confidence 23599997651 1354333221 01000 0000 000 001234533 2 22 14699999
Q ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHHh-cCCcEEEecccCCCCCcccccCCCCCCCchHHHHHHHHHHHHcCCcccc
Q 006881 145 VYGPRADSEDTVRIQFKLQFFHKRWEFLLC-QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFD 223 (627)
Q Consensus 145 VY~P~~~~~~~eR~~~k~~f~~~~~~~L~~-~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D 223 (627)
+|.+..+. ..|... +..+.+.+..+.. .+.++||+||||..+.. ..++.+. .. +.|.|
T Consensus 141 ~Hl~~~~~--~~R~~q-~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~----------------~~~~~l~-~~-g~l~D 199 (298)
T 3mpr_A 141 LHMDHIGK--KARVES-AFLVQEKMKELGRGKNLPAILTGDFNVDQTH----------------QSYDAFV-SK-GVLCD 199 (298)
T ss_dssp EECCSSCH--HHHHHH-HHHHHHHHHHTTTTSCCCEEEEEECSSCTTS----------------HHHHHHH-TT-SSSEE
T ss_pred ecCCCCCH--HHHHHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------------HHHHHHh-cC-Ccchh
Confidence 99986542 334322 1222222333322 57899999999976542 1233333 22 24999
Q ss_pred cccccCCCCCCccccCCCCCCCccCCCcceEEEEEEeCCC
Q 006881 224 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 263 (627)
Q Consensus 224 ~~R~~hP~~~~~yT~ws~~~~a~~~n~gsRIDyILvs~~l 263 (627)
+|+...+.....+||...... ...+.||||||+++.+
T Consensus 200 ~~~~~~~~~~~~~T~~~~~~~---~~~~~rID~Il~s~~~ 236 (298)
T 3mpr_A 200 SYEKCDYRYALNGTFNNFDPN---SFTESRIDHIFVSPSF 236 (298)
T ss_dssp HHHHCSEEECSSCSBCTTCTT---CCCSCCCEEEEECTTS
T ss_pred hHhhhcccCCCCCCccCCCCC---CCCCceEEEEEeCCCe
Confidence 998776432223676543321 1246899999999875
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.83 E-value=9.5e-20 Score=187.36 Aligned_cols=214 Identities=14% Similarity=0.127 Sum_probs=108.3
Q ss_pred CEEEEEeccCcchh-------hhhhhHHHHHHhhcCCcEEEEecccchhc--chhhHHHhhcCCcE--------------
Q 006881 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRRQ--ELKSDLVMADGYES-------------- 57 (627)
Q Consensus 1 mrIlTwNInGlr~~-------~~~~~~l~~~L~~l~aDIIcLQETk~t~~--~l~~~l~~~~GY~~-------------- 57 (627)
|||+||||++++.. ..+...+...+...+||||||||+..... .+.+.+ ..+|..
T Consensus 10 lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 87 (306)
T 2ddr_A 10 LKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNL--KKEYPNQTAVLGRSSGSEWD 87 (306)
T ss_dssp EEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHH--TTTCCEECCCTTSCCSTTSS
T ss_pred EEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHH--hhhCCceeeccCcccccccc
Confidence 69999999987531 12223355567888999999999975431 221111 223322
Q ss_pred -EeeccccCCCCCCcceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcE-EEE
Q 006881 58 -FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC-VIT 135 (627)
Q Consensus 58 -~fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~-viv 135 (627)
.+.... ....+..|||||+|. |+.....+. +.. + .+.+ ..++|. +.+
T Consensus 88 ~~~~~~~---~~~~~~~G~ailSr~-----------pi~~~~~~~-~~~---~---~~~~----------~~~~r~~~~~ 136 (306)
T 2ddr_A 88 KTLGNYS---SSTPEDGGVAIVSKW-----------PIAEKIQYV-FAK---G---CGPD----------NLSNKGFVYT 136 (306)
T ss_dssp EEEESCC---TTCSSCCCCEEEESS-----------CEEEEEEEE-CSC---C---C--------------CCCCEEEEE
T ss_pred ccccccc---ccCccCCeEEEEECC-----------CcccccEEE-cCC---C---CCcc----------hhcCCCeEEE
Confidence 221110 112344699999997 443322110 000 0 0000 023443 333
Q ss_pred Ee----CcEEEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHH----hcCCcEEEecccCCCCCcccccCCCCCCCchH
Q 006881 136 DH----GHFILFNVYGPRADSED--TVRIQFKLQFFHKRWEFLL----CQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNE 205 (627)
Q Consensus 136 ~~----~~~~LinVY~P~~~~~~--~eR~~~k~~f~~~~~~~L~----~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~ 205 (627)
+. ..|.|+|+|.++..... ......|...+..+.+.+. ..+.++||+||||+.+...|... ..
T Consensus 137 ~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~------s~- 209 (306)
T 2ddr_A 137 KIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN------DS- 209 (306)
T ss_dssp EEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT------TS-
T ss_pred EEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC------CH-
Confidence 32 35999999998764210 0112223333333222222 24679999999999886655311 11
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCCCccccCCCCCC----CccCCCcceEEEEEEeCCCc
Q 006881 206 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 264 (627)
Q Consensus 206 ~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~ws~~~~----a~~~n~gsRIDyILvs~~l~ 264 (627)
.++.++...+ +.|. .. ... .|||...... .++.+.+.||||||+++.+.
T Consensus 210 ---~~~~l~~~~~--~~~~--~~--~g~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~~ 262 (306)
T 2ddr_A 210 ---EYASMFKTLN--ASVP--SY--TGH-TATWDATTNSIAKYNFPDSPAEYLDYIIASKDHA 262 (306)
T ss_dssp ---HHHHHHHHHT--BCCC--EE--EEC-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSC
T ss_pred ---HHHHHHHhcC--CCCc--cc--CCC-CcccCCCCCccccccCCCCCcceeeEEEEeCCCC
Confidence 2334454444 5542 21 112 3787432110 12223478999999998753
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.80 E-value=1e-18 Score=182.80 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=108.4
Q ss_pred CEEEEEeccCcch-------hhhhhhHHHHHHhhcCCcEEEEecccchh--cchhhHHHhhcCCcEEeeccccCCCCCCc
Q 006881 1 MKIVTYNVNGLRQ-------RVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRTSDKGRTG 71 (627)
Q Consensus 1 mrIlTwNInGlr~-------~~~~~~~l~~~L~~l~aDIIcLQETk~t~--~~l~~~l~~~~GY~~~fs~~~~~~~gr~G 71 (627)
|||+||||+++.. ...+...+..++...+||||||||+.... ..+.+.+ ...|...+.... .++.|
T Consensus 30 lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L--~~~~py~~~~~g---~~~~~ 104 (317)
T 3i41_A 30 LKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNV--KKEYPYQTPVLG---RSQSG 104 (317)
T ss_dssp CCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTT---SCSTT
T ss_pred eEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHH--HHhCCcccccCC---ccccC
Confidence 7999999998742 12232345667778999999999996532 2222222 223432221110 11111
Q ss_pred -------c-------eEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEE-EE-
Q 006881 72 -------Y-------SGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-IT- 135 (627)
Q Consensus 72 -------y-------sGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~v-iv- 135 (627)
| .|++||+|. |+...+.+. +.. . .+.+ ..+.|.+ .+
T Consensus 105 ~~~~~~~y~~~~~~~~G~~ilSr~-----------Pi~~~~~~~-~~~---~---~~~d----------~~~~r~~~~~~ 156 (317)
T 3i41_A 105 WDKTEGSYSSTVAEDGGVAIVSKY-----------PIKEKIQHV-FKS---G---CGFD----------NDSNKGFVYTK 156 (317)
T ss_dssp CSEEEESCCSSCSBCCCCEEEESS-----------CEEEEEEEE-CSC---C---CSSG----------GGBCCEEEEEE
T ss_pred ccCcccccccccccCCccEEEeCC-----------CCccceeEE-CCC---C---CCcc----------cccCcceEEEE
Confidence 1 499999998 443322110 000 0 0000 0123332 22
Q ss_pred -E--eCcEEEEEEecCCCCCCc--hHHHHHHHHHH---HHHHHHH-HhcCCcEEEecccCCCCCcccccCCCCCCCchHH
Q 006881 136 -D--HGHFILFNVYGPRADSED--TVRIQFKLQFF---HKRWEFL-LCQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF 206 (627)
Q Consensus 136 -~--~~~~~LinVY~P~~~~~~--~eR~~~k~~f~---~~~~~~L-~~~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~ 206 (627)
+ ...|.|+|+|.++..... ......|...+ .+.++.. ...+.+|||+||||..+..
T Consensus 157 i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s--------------- 221 (317)
T 3i41_A 157 IEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT--------------- 221 (317)
T ss_dssp EEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS---------------
T ss_pred EEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC---------------
Confidence 2 235899999998765210 11122222333 2333333 2357899999999987643
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCccccCCCCCC----CccCCCcceEEEEEEeCCCc
Q 006881 207 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 264 (627)
Q Consensus 207 r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~ws~~~~----a~~~n~gsRIDyILvs~~l~ 264 (627)
..++.++...+ +.|.-. ..+ .|||+..... .++.+...||||||++....
T Consensus 222 -~~~~~l~~~l~--l~~~~~-~g~----~~t~d~~~n~~~~~~~p~~~~~rLDyIlvs~~~~ 275 (317)
T 3i41_A 222 -PEFKDMLKNLN--VNDVLY-AGH----NSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHK 275 (317)
T ss_dssp -HHHHHHHHHHT--BCCCEE-EEC----SCSBCTTTCHHHHHHCTTCCCBCCEEEEEBTTSC
T ss_pred -HHHHHHHHhcC--CCCccc-CCC----CcccCCCCCccccccCCCCCCcceEEEEEeCCcC
Confidence 12334444444 666522 111 3677665331 23445568999999999864
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.72 E-value=2.6e-16 Score=170.10 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=52.2
Q ss_pred CEEEEEeccCcc---------------hhhhhhhHHHHHHhhcCCcEEEEecccchh--cchhhHHHhhcCCcEEeecc-
Q 006881 1 MKIVTYNVNGLR---------------QRVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCT- 62 (627)
Q Consensus 1 mrIlTwNInGlr---------------~~~~~~~~l~~~L~~l~aDIIcLQETk~t~--~~l~~~l~~~~GY~~~fs~~- 62 (627)
+||+||||..-. ....|+..|.++|...+||||||||++... +.+. ..+...||..+|...
T Consensus 32 ~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l~-~~L~~~gY~~v~~~k~ 110 (398)
T 3ngq_A 32 FTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFL-PALKERGYDGFFSPKS 110 (398)
T ss_dssp EEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHH-HHHHHTTEEEEEEESC
T ss_pred EEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHHH-HHHHhCCceEEEecCC
Confidence 589999996411 111223468999999999999999997643 2332 334567998877532
Q ss_pred ccCC---CCCCcceEEEEEEeec
Q 006881 63 RTSD---KGRTGYSGVATFCRVK 82 (627)
Q Consensus 63 ~~~~---~gr~GysGVAIlsR~~ 82 (627)
+... .++.++.|||||+|..
T Consensus 111 r~~~~~~~~~~~~eG~AIfyr~~ 133 (398)
T 3ngq_A 111 RAKIMSEQERKHVDGCAIFFKTE 133 (398)
T ss_dssp TTSCCCHHHHHTCEEEEEEEETT
T ss_pred CccccccccccCcceeEEEEECC
Confidence 1000 0123567999999983
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.4e-16 Score=182.94 Aligned_cols=81 Identities=21% Similarity=0.407 Sum_probs=34.2
Q ss_pred CEEEEEeccC--c-c------------hhhhhhhHHHHHHhhcCCcEEEEecccchh-cchhhHHHhhcCCcEEeeccc-
Q 006881 1 MKIVTYNVNG--L-R------------QRVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTR- 63 (627)
Q Consensus 1 mrIlTwNInG--l-r------------~~~~~~~~l~~~L~~l~aDIIcLQETk~t~-~~l~~~l~~~~GY~~~fs~~~- 63 (627)
+++++|||.. + . ....|+..|.+.|..++||||||||+.... ..+....+...||..+|....
T Consensus 395 ~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~ 474 (727)
T 4b8c_D 395 FTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKAR 474 (727)
T ss_dssp -------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-----
T ss_pred eeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCC
Confidence 4688999964 1 1 011122458999999999999999997532 122223344568888764221
Q ss_pred cC---CCCCCcceEEEEEEee
Q 006881 64 TS---DKGRTGYSGVATFCRV 81 (627)
Q Consensus 64 ~~---~~gr~GysGVAIlsR~ 81 (627)
.. ..+..++.|||||+|.
T Consensus 475 ~~~~~~~~~~~~~G~AI~y~~ 495 (727)
T 4b8c_D 475 AKTMHSKDSKKVDGCCIFFKR 495 (727)
T ss_dssp -----------CCCCEEEC--
T ss_pred cccccccCCCCcccEEEEEEc
Confidence 00 0112345699999775
No 25
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.54 E-value=6.9e-14 Score=141.06 Aligned_cols=149 Identities=16% Similarity=0.214 Sum_probs=83.8
Q ss_pred CEEEEEeccCcchhhhh--hhHHHHHHhhcC-CcEEEEecccch--------h----cch-hhHHHhhcC------CcEE
Q 006881 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFD-ADIICFQETKLR--------R----QEL-KSDLVMADG------YESF 58 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~--~~~l~~~L~~l~-aDIIcLQETk~t--------~----~~l-~~~l~~~~G------Y~~~ 58 (627)
+||+|||++|-...... ...|.++|...+ +|||+|||+-.- + ... ..+++...| +.++
T Consensus 16 ~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~~~yi 95 (262)
T 2f1n_A 16 FRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYI 95 (262)
T ss_dssp CCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEEEE
T ss_pred eEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCceEEE
Confidence 58999999986532221 125889999988 999999998622 1 000 011222233 5443
Q ss_pred eeccccCCCCCCcceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEEeC
Q 006881 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG 138 (627)
Q Consensus 59 fs~~~~~~~gr~GysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~~~ 138 (627)
|... .+ .+ .++.|+||++|.+ +. +.+. ++. + ......++-++.+
T Consensus 96 Y~~~-~D-~~-~~r~nlAIlSr~~-----------ad--ev~v-Lp~---~----------------~~~~Rp~lgiri~ 139 (262)
T 2f1n_A 96 YFSA-VD-AL-GGRVNLALVSNRR-----------AD--EVFV-LSP---V----------------RQGGRPLLGIRIG 139 (262)
T ss_dssp EEEC-SC-SS-SCSSCEEEEESSC-----------CS--EEEE-ECC---S----------------STTCCCEEEEEET
T ss_pred EEee-cc-CC-CCceeeEEEEccc-----------cc--ceEE-CCC---C----------------CCCCCceEEEEEC
Confidence 3322 11 22 3556999999984 22 2211 110 0 0113345557788
Q ss_pred cEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhc-C-----CcEEEecccCCCCCc
Q 006881 139 HFILFNVYGPRADSEDTVRIQFKLQFFHKRWEFLLCQ-G-----RRIFVVGDLNIAPAA 191 (627)
Q Consensus 139 ~~~LinVY~P~~~~~~~eR~~~k~~f~~~~~~~L~~~-g-----~~VII~GDFN~~~~~ 191 (627)
.++++|+|+-..+.. ++.+. ..++ .+.+... . .+|||+||||..+..
T Consensus 140 ~~~ff~tHa~a~~g~--da~a~-v~~I---~~~~~~~~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 140 NDAFFTAHAIAMRNN--DAPAL-VEEV---YNFFRDSRDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp TEEEEEEECCSSSSC--SHHHH-HHHH---HHHHHTCSSHHHHTCEEEEEEECSSCHHH
T ss_pred CEEEEEEEecCCCCc--cHHHH-HHHH---HHHHhcCcccccCCCcEEEEecCCCCCcc
Confidence 899999999776432 23211 1222 2222222 2 499999999987654
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.52 E-value=9.2e-14 Score=140.52 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=76.6
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhhc--CCcEEEEecccchhc-chh---hHHHhh--cCCcEEeeccccCCCCC-Cc
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF--DADIICFQETKLRRQ-ELK---SDLVMA--DGYESFFSCTRTSDKGR-TG 71 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~l--~aDIIcLQETk~t~~-~l~---~~l~~~--~GY~~~fs~~~~~~~gr-~G 71 (627)
|||+||||+.+.....+...+.+.|.+. +||||||||+.-... .+. +.+... .+|..+.... .+. .+
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~----~~~~~~ 76 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEP----LGRNSY 76 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCC----BCSSSC
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEccc----CCCCCC
Confidence 7999999986532211111244444443 899999999964321 121 112111 3476555432 121 11
Q ss_pred ceEEEEEEeeccCCCCcccccceeeeecccccccccccccccCccccccccccccCCCCcEEEEE-----eCcEEEEEEe
Q 006881 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD-----HGHFILFNVY 146 (627)
Q Consensus 72 ysGVAIlsR~~~~f~~~~~~~Pi~aeegltg~~~~~~~~~~~~~~~~~~~~~~~~D~EGR~viv~-----~~~~~LinVY 146 (627)
.-++++++|.. .+.....+. +... +.. .+-. ....+-+.+... ...|+|+|+|
T Consensus 77 ~~~~~~ly~~~----------~v~~~~~~~-~~~~--~~~-~~~~--------~~~R~p~~~~~~~~~~~g~~~~vi~~H 134 (260)
T 2a40_B 77 KERYLFLFRPN----------KVSVLDTYQ-YDDG--CES-CGND--------SFSREPAVVKFSSHSTKVKEFAIVALH 134 (260)
T ss_dssp CBEEEEEECTT----------TCEEEEEEE-CCTT--STT-THHH--------HCSSCCEEEEEECTTSSSSEEEEEECC
T ss_pred cEEEEEEEcCc----------eeEecCcee-ccCC--CcC-CCCC--------ceeeCCEEEEEEeCCCCCceEEEEEec
Confidence 23689999873 222222110 0000 000 0000 011122233333 2469999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHH--hcCCcEEEecccCCCCC
Q 006881 147 GPRADSEDTVRIQFKLQFFHKRWEFLL--CQGRRIFVVGDLNIAPA 190 (627)
Q Consensus 147 ~P~~~~~~~eR~~~k~~f~~~~~~~L~--~~g~~VII~GDFN~~~~ 190 (627)
.+.... ..+ .+.+...++.+. ....++||+||||..+.
T Consensus 135 l~~~~~--~~q----~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 135 SAPSDA--VAE----INSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp CCGGGH--HHH----HHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred CCCCCc--HHH----HHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 985432 111 223333333332 24679999999998654
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.49 E-value=5.2e-13 Score=135.75 Aligned_cols=40 Identities=30% Similarity=0.367 Sum_probs=29.9
Q ss_pred CEEEEEeccCcchh--hhhhhHHHHHHhh-cCCcEEEEecccc
Q 006881 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDS-FDADIICFQETKL 40 (627)
Q Consensus 1 mrIlTwNInGlr~~--~~~~~~l~~~L~~-l~aDIIcLQETk~ 40 (627)
+||+||||+|-... -+....++++|.. .++|||+|||+..
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~ 47 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGS 47 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCS
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCC
Confidence 68999999884221 1211148999999 8899999999964
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.30 E-value=1.6e-10 Score=122.62 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=27.1
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhh---cCCcE--EEEecc
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS---FDADI--ICFQET 38 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~---l~aDI--IcLQET 38 (627)
+.|+||||+|.... . .|.++|.. ..||| |||||.
T Consensus 27 i~v~TwNv~g~~~~-~---~l~~~L~~~~~~~~DI~viglQEi 65 (347)
T 1i9z_A 27 IFVASYNLNGCSAT-T---KLENWLFPENTPLADIYVVGFQEI 65 (347)
T ss_dssp EEEEEEECTTCCCC-S---CCHHHHSCSSSCCCSEEEEEEECS
T ss_pred EEEEeEecCCCCCc-h---hHHHHhccccCCCCCEEEEEeEEe
Confidence 47899999998752 1 38888874 68999 899997
No 29
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.30 E-value=5.5e-12 Score=130.17 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=26.2
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHh---hcCCcE--EEEecccch
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLD---SFDADI--ICFQETKLR 41 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~---~l~aDI--IcLQETk~t 41 (627)
|+|+||||++.... . .+.+++. ..+||| |||||....
T Consensus 9 i~V~T~Nv~~~~~~-~---~l~~wl~~~~~~~pDI~viglQEv~~~ 50 (282)
T 2imq_X 9 VHTVSWNSGHERAP-T---NLEELLGLNSGETPDVIAVAVQGFGFQ 50 (282)
T ss_dssp EEEEEEEEETCCCC-S---CCHHHHTCTTSCCCSEEEEEEEESCTT
T ss_pred EEEEEEeCCCCcCc-h---hHHHHhcccccCCCCEEEEEeeeeccc
Confidence 58999999876532 1 2455554 688996 599999754
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.17 E-value=9.2e-10 Score=117.22 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=43.0
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHh----hcCCcE--EEEecccchhcchhhHHHhhcCCcEEeeccccCCCCCCcceE
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLD----SFDADI--ICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSG 74 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~----~l~aDI--IcLQETk~t~~~l~~~l~~~~GY~~~fs~~~~~~~gr~GysG 74 (627)
|.|+||||||.+.+... |.++|. ...||| |+|||+........+.+....|....+... ..-|.-+
T Consensus 28 i~v~TwNv~g~~~~~~~---L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s-----~~l~g~~ 99 (357)
T 2xsw_A 28 LFVATWNMQGQKELPPS---LDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSS-----AAHGVLY 99 (357)
T ss_dssp EEEEEEECTTCSSCCSC---CHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEE-----EEETTEE
T ss_pred EEEEEEecCCCCCCccc---HHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhh-----hhhhhEE
Confidence 47899999997543332 556664 357896 889999754333222233333433322211 1123348
Q ss_pred EEEEEeec
Q 006881 75 VATFCRVK 82 (627)
Q Consensus 75 VAIlsR~~ 82 (627)
++||+|.+
T Consensus 100 l~Vfvr~~ 107 (357)
T 2xsw_A 100 MSLFIRRD 107 (357)
T ss_dssp EEEEEEGG
T ss_pred EEEEEchH
Confidence 99999985
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.85 E-value=1.3e-07 Score=98.48 Aligned_cols=38 Identities=37% Similarity=0.488 Sum_probs=29.3
Q ss_pred CEEEEEeccCcchhhhhhhHHHHHHhh--cCCc--EEEEecccchh
Q 006881 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS--FDAD--IICFQETKLRR 42 (627)
Q Consensus 1 mrIlTwNInGlr~~~~~~~~l~~~L~~--l~aD--IIcLQETk~t~ 42 (627)
|.|+||||||.+.+ . .|.++|.. ..|| ||+|||+.+..
T Consensus 10 i~v~TwNvng~~~~-~---~l~~wL~~~~~~pDI~viGlQE~~l~~ 51 (313)
T 3mtc_A 10 FFAGTYNVNGQSPK-E---CLRLWLSNGIQAPDVYCVGFQELDLSK 51 (313)
T ss_dssp EEEEEEECTTCCCC-S---CTHHHHSSSCCCCSEEEEEEECSCCSH
T ss_pred EEEEEEEcCCccCc-h---hHHHHhcccCCCCCeEEEEEEecccch
Confidence 35789999999753 2 38888876 6799 79999997643
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.58 E-value=1.7e-06 Score=90.39 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=40.0
Q ss_pred EEEEEeccCcchhhhhhhHHHHHHhh-------------cCCcEE--EEecccchhcc----hhhHHHh--hcCCcEEee
Q 006881 2 KIVTYNVNGLRQRVSQFGSLRKLLDS-------------FDADII--CFQETKLRRQE----LKSDLVM--ADGYESFFS 60 (627)
Q Consensus 2 rIlTwNInGlr~~~~~~~~l~~~L~~-------------l~aDII--cLQETk~t~~~----l~~~l~~--~~GY~~~fs 60 (627)
-|.||||||...+ . .|..+|.- ..+||+ +|||.-..... +.+.+-. ...|....+
T Consensus 11 ~vgTwNv~g~~p~-~---~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s 86 (316)
T 4a9c_A 11 FIGTWNMGSVPPP-K---NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM 86 (316)
T ss_dssp EEEEEECTTSCCC-S---CCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEeEcCCcCCC-c---chhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEe
Confidence 4789999997543 2 27777752 347876 88998543221 2111111 134655544
Q ss_pred ccccCCCCCCcceEEEEEEeec
Q 006881 61 CTRTSDKGRTGYSGVATFCRVK 82 (627)
Q Consensus 61 ~~~~~~~gr~GysGVAIlsR~~ 82 (627)
.. .+.-++++|+|..
T Consensus 87 ~~-------L~gi~l~Vfvk~~ 101 (316)
T 4a9c_A 87 QS-------LWNIKVAVLVKPE 101 (316)
T ss_dssp EE-------ETTEEEEEEECGG
T ss_pred ee-------ehheeeeeEEeHH
Confidence 22 2224788999984
No 33
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=69.09 E-value=2 Score=30.41 Aligned_cols=35 Identities=31% Similarity=0.833 Sum_probs=26.1
Q ss_pred CCCCCCCCCccccceeecCCCCCCCceeeeCCCCCCCCCCCCCCCCcee
Q 006881 570 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 618 (627)
Q Consensus 570 ~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~ 618 (627)
..|.|. -||.|..| +|+-.||. --|+|+ ..||||+
T Consensus 3 ~~P~Cd-~GeqCAvR----kG~Rigkl-C~C~rg--------~~Cn~fl 37 (41)
T 1hy9_A 3 QVPMCD-AGEQCAVR----KGARIGKL-CDCPRG--------TSCNSFL 37 (41)
T ss_dssp CCCBCC-SSSCSEEE----CSSSEEEC-CBCCTT--------CCBCTTT
T ss_pred cCCcCC-ccchhhhh----cccccchh-cCCCCC--------Ccchhhh
Confidence 479999 99999754 38888874 345543 7899996
No 34
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=26.36 E-value=15 Score=23.26 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=9.6
Q ss_pred CccccccccccC
Q 006881 462 GQLSLKSFFHKR 473 (627)
Q Consensus 462 ~q~sl~~fF~~~ 473 (627)
|-.+|-+||++=
T Consensus 8 g~~TLesFFK~L 19 (26)
T 2zvk_U 8 GMQTLESFFKPL 19 (26)
T ss_pred ccccHHHHhccC
Confidence 445999999984
Done!