Query 006883
Match_columns 627
No_of_seqs 364 out of 1065
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 15:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03124 poly [ADP-ribose] pol 100.0 3E-164 7E-169 1367.2 55.1 623 1-627 1-641 (643)
2 PLN03122 Poly [ADP-ribose] pol 100.0 1E-136 2E-141 1172.6 43.0 486 127-627 305-807 (815)
3 PLN03123 poly [ADP-ribose] pol 100.0 8E-133 2E-137 1161.2 46.7 482 124-627 487-980 (981)
4 cd01437 parp_like Poly(ADP-rib 100.0 2.5E-97 5E-102 787.0 32.0 344 276-623 1-347 (347)
5 KOG1037 NAD+ ADP-ribosyltransf 100.0 2.8E-70 6.1E-75 607.0 11.6 481 127-627 38-524 (531)
6 PF00644 PARP: Poly(ADP-ribose 100.0 6E-46 1.3E-50 369.3 14.9 206 411-624 1-206 (206)
7 cd01438 tankyrase_like Tankyra 100.0 4.1E-36 9E-41 299.2 17.5 181 410-624 13-220 (223)
8 PF02877 PARP_reg: Poly(ADP-ri 100.0 6.1E-36 1.3E-40 278.8 13.2 132 276-409 1-133 (133)
9 cd08003 WGR_PARP2_like WGR dom 100.0 6.3E-36 1.4E-40 266.3 12.2 102 150-252 1-103 (103)
10 cd08002 WGR_PARP3_like WGR dom 100.0 4.4E-33 9.6E-38 247.0 12.1 99 148-252 2-100 (100)
11 cd08001 WGR_PARP1_like WGR dom 100.0 3.6E-32 7.7E-37 243.3 12.8 103 149-252 1-104 (104)
12 cd07997 WGR_PARP WGR domain of 100.0 3.7E-30 8E-35 229.5 11.6 101 151-252 2-102 (102)
13 cd01439 TCCD_inducible_PARP_li 99.9 1.2E-25 2.6E-30 206.5 9.3 112 474-622 1-121 (121)
14 cd01341 ADP_ribosyl ADP_ribosy 99.9 1.4E-25 3.1E-30 210.2 7.9 120 474-618 1-137 (137)
15 smart00773 WGR Proposed nuclei 99.8 5.3E-21 1.1E-25 164.7 10.8 82 155-238 2-83 (84)
16 PF05406 WGR: WGR domain; Int 99.8 1.1E-20 2.4E-25 161.7 8.0 80 156-239 2-81 (81)
17 cd07994 WGR WGR domain. The WG 99.8 1.2E-18 2.6E-23 146.4 9.5 70 161-233 2-72 (73)
18 cd07996 WGR_MMR_like WGR domai 99.6 7.9E-15 1.7E-19 123.2 9.2 72 161-234 2-73 (74)
19 COG3831 Uncharacterized conser 99.0 1.4E-09 3.1E-14 92.9 7.9 74 159-239 1-74 (85)
20 PF02037 SAP: SAP domain; Int 98.7 2.3E-08 5.1E-13 72.4 4.6 34 3-36 2-35 (35)
21 smart00513 SAP Putative DNA-bi 98.4 3.2E-07 6.9E-12 66.4 4.1 34 3-36 2-35 (35)
22 cd07998 WGR_DNA_ligase WGR dom 98.2 4.7E-06 1E-10 70.7 7.8 64 170-234 10-74 (77)
23 KOG4259 Putative nucleic acid- 98.2 9.8E-07 2.1E-11 87.6 4.2 39 3-41 7-45 (260)
24 KOG4661 Hsp27-ERE-TATA-binding 97.7 2.2E-05 4.8E-10 86.6 2.9 40 3-42 31-70 (940)
25 PF02037 SAP: SAP domain; Int 95.8 0.012 2.6E-07 42.6 3.6 33 70-102 1-33 (35)
26 PF12949 HeH: HeH/LEM domain; 95.1 0.02 4.3E-07 41.6 2.8 32 2-33 1-34 (35)
27 KOG4246 Predicted DNA-binding 94.9 0.0094 2E-07 69.0 1.1 42 2-43 646-687 (1194)
28 smart00513 SAP Putative DNA-bi 94.0 0.077 1.7E-06 38.3 3.7 33 70-102 1-33 (35)
29 PF15633 Tox-ART-HYD1: HYD1 si 76.7 1.2 2.5E-05 39.8 1.0 40 475-516 1-40 (96)
30 PF13151 DUF3990: Protein of u 72.1 2.9 6.2E-05 40.4 2.5 61 473-542 1-61 (154)
31 KOG4177 Ankyrin [Cell wall/mem 70.1 1.2 2.7E-05 54.9 -0.5 138 419-566 965-1130(1143)
32 PF07498 Rho_N: Rho terminatio 64.5 8.4 0.00018 29.1 3.2 34 69-102 1-36 (43)
33 PRK00819 RNA 2'-phosphotransfe 60.5 4.4 9.5E-05 40.2 1.3 22 473-494 95-116 (179)
34 KOG4259 Putative nucleic acid- 58.7 7.3 0.00016 39.7 2.5 39 67-105 3-41 (260)
35 PF07498 Rho_N: Rho terminatio 51.7 26 0.00056 26.5 4.0 33 4-36 4-38 (43)
36 TIGR00599 rad18 DNA repair pro 51.1 20 0.00043 39.9 4.6 34 4-37 268-301 (397)
37 cd01436 Dipth_tox_like Mono-AD 50.8 9.1 0.0002 35.5 1.6 50 476-526 3-52 (147)
38 TIGR00578 ku70 ATP-dependent D 45.2 44 0.00095 39.1 6.4 37 67-103 546-582 (584)
39 PF01885 PTS_2-RNA: RNA 2'-pho 44.8 12 0.00027 37.1 1.7 34 472-515 105-138 (186)
40 KOG2416 Acinus (induces apopto 44.5 23 0.00049 41.0 3.8 37 2-39 13-49 (718)
41 PLN03124 poly [ADP-ribose] pol 40.7 10 0.00022 44.6 0.3 38 4-41 81-118 (643)
42 PF13297 Telomere_Sde2_2: Telo 39.8 42 0.00091 27.5 3.6 29 6-34 16-44 (60)
43 smart00540 LEM in nuclear memb 38.3 57 0.0012 25.1 4.0 35 4-38 5-43 (44)
44 PF10208 Armet: Degradation ar 36.4 30 0.00064 33.5 2.7 23 2-24 104-126 (154)
45 PF14164 YqzH: YqzH-like prote 34.5 44 0.00096 27.7 3.0 31 293-323 7-37 (64)
46 PF09124 Endonuc-dimeris: T4 r 29.8 86 0.0019 25.2 3.9 34 3-36 14-49 (54)
47 PF08312 cwf21: cwf21 domain; 29.5 43 0.00092 26.0 2.1 16 5-20 11-26 (46)
48 COG1859 KptA RNA:NAD 2'-phosph 29.0 33 0.00071 34.9 1.7 26 470-495 118-143 (211)
49 PTZ00315 2'-phosphotransferase 26.6 29 0.00064 40.4 1.1 22 473-494 477-499 (582)
50 COG3797 Uncharacterized protei 26.6 88 0.0019 31.0 4.1 36 3-39 17-67 (178)
51 PF07766 LETM1: LETM1-like pro 22.8 2.2E+02 0.0047 29.9 6.6 81 4-103 170-251 (268)
52 PF10281 Ish1: Putative stress 22.3 1.7E+02 0.0036 21.3 4.0 31 5-35 4-37 (38)
53 TIGR02313 HpaI-NOT-DapA 2,4-di 21.0 1.7E+02 0.0037 31.0 5.4 52 279-330 233-289 (294)
54 KOG0287 Postreplication repair 20.2 1.3E+02 0.0028 32.9 4.1 32 5-36 251-282 (442)
No 1
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=3e-164 Score=1367.19 Aligned_cols=623 Identities=68% Similarity=1.089 Sum_probs=572.8
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc---------ccCCCcccCCCCCCCCCCCCccccchhhhc
Q 006883 1 MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK---------KSVGSKKRGRECDETDSNGSQKVKSIESFG 71 (627)
Q Consensus 1 ~~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (627)
|++||||+|||+||++||||+.|+|++|+.||++|+.+++. ..+....+.|..++...++++++++++++.
T Consensus 1 ~~~~~~v~~l~~~l~~~~~~~~g~k~~l~~rl~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (643)
T PLN03124 1 MANKLKVDELRAALAKRGLDTTGLKAALVRRLDDAIAEDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSPKRIAIDEVK 80 (643)
T ss_pred CCccchhHHHHHHHHhcCCcccccchHHHHHHHhhhhhhhcccccccccccchhhccccccCCCcccccchhhhhhhhhc
Confidence 89999999999999999999999999999999999988772 112222244445555557889999999999
Q ss_pred cccHHHHHHHHHhhccCCCCchHHHHHHHhhcccCCCch---------hhhhhHhhhhccccceeeeeccCccccCCCCC
Q 006883 72 QMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSK---------DTLLQEEVNECKDEKIVKATKKGAAVLDPWLP 142 (627)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~k~~~~vD~~~~ 142 (627)
+|+++.+++..+.++.++.++|.++.+|+++..+.+.++ ++.+++.++.++.++++++++||+++||+.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~vD~~~~ 160 (643)
T PLN03124 81 GMTVRELREAASERGLATTGRKKDLLERLCAALESDVKVGSANGTGEDEKEKGGDEEREKEEKIVTATKKGRAVLDQWLP 160 (643)
T ss_pred ccccchhhHHHHHHhhhccccccchhhhccccccccccccccccccchhccccccccccccccceeeeeecccccCCCCC
Confidence 999999999999999999999999999998766664322 22233555677889999999999999999999
Q ss_pred cccCCceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHH
Q 006883 143 EHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQ 222 (627)
Q Consensus 143 ~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~k 222 (627)
..+++.+|||++++.+|+|||+|||+++|+|+||+||||+++..+.|+||+||||||+.||+++.+||+++++|+.+|++
T Consensus 161 ~~~~~~~hVyed~g~iYda~Lnqtdi~~n~NkFY~iQlLe~d~~~~Y~v~~rWGRVG~~Gq~~l~~~~~sle~Ai~~F~k 240 (643)
T PLN03124 161 DHIKSNYHVLEEGDDVYDAMLNQTNVGDNNNKFYVLQVLESDDGSKYMVYTRWGRVGVKGQDKLHGPYDSREPAIREFEK 240 (643)
T ss_pred ccccCceEEEecCCeEEEEEEEccccCCCCcceEEEEEEEeCCCCeEEEEEEeCccCCcCcccccCCCCCHHHHHHHHHH
Confidence 87778999999999999999999999999999999999999888999999999999999999988789999999999999
Q ss_pred HHHHHhhcccccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHH
Q 006883 223 KFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISLICNISMMKQLMME 302 (627)
Q Consensus 223 kF~eKTgn~W~~r~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~li~lI~n~~~~~~~m~e 302 (627)
+|++||||.|++|.+|+++||||+|||+||+.++++... . .......+..+|+|+++||+||++|||+++|+++|++
T Consensus 241 kF~eKTGN~W~~R~~F~k~pgKY~~ie~dy~~~~~~~~~--~-~~~~~~~~~~~skL~~~Vq~Li~lIfd~~~m~~~m~e 317 (643)
T PLN03124 241 KFYDKTKNHWSDRKNFISHPKKYTWLEMDYEDEEESKKD--K-PSVSSEDKNKQSKLDPRVAQFISLICDVSMMKQQMME 317 (643)
T ss_pred HHHHHhCCchhhcccccccCCceeEEEeecccccchhhh--c-cchhccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999999999999999999999976543221 0 1111122334699999999999999999999999999
Q ss_pred hccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCChhHHHHhhhhccccccCCCCCCccccccCCCHHHHHHHHHHHHH
Q 006883 303 IGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEA 382 (627)
Q Consensus 303 ~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~~~l~~lsn~fYtlIPh~fg~~~~~~~~i~~~~~lk~k~~lle~ 382 (627)
|+||+.+|||||||++||.+||+||++|+++|+......+.+|||+|||+|||+||++.+|||+|||.++|++|++|||+
T Consensus 318 ~~~D~~KmPLGkLSk~qI~kgy~vL~ei~~~l~~~~~~~l~~lSn~FYTlIPH~FG~~~~~~~vIdt~~~lk~k~elLe~ 397 (643)
T PLN03124 318 IGYNARKLPLGKLSKSTILKGYEVLKRIAEVISRSDRETLEELSGEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEA 397 (643)
T ss_pred cCCCcccCCCcccCHHHHHHHHHHHHHHHHHHcccchHHHHHHhcCeEEecCcccccCCCCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888778999999999999999999999888999999999999999999
Q ss_pred HHhHHHHHHHhhhcccccCCCchHHhhcccceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHH
Q 006883 383 LGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERF 462 (627)
Q Consensus 383 L~dieiA~~ll~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF 462 (627)
|.|||+|++|++.......||+|.+|++|+|+|+||+++|+||++|++|+.+||+++|..|+++|.+||+|+|.+|.+||
T Consensus 398 L~DIevA~~ll~~~~~~~~~pld~~Y~~L~c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~~E~~rF 477 (643)
T PLN03124 398 LGEIEIATKLLKDDIGEQDDPLYAHYKRLNCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSREGEDERF 477 (643)
T ss_pred HHHHHHHHHHHhhccCCCCCcHHHHHHHcCCeeEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccccchhhH
Confidence 99999999999876666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCCCCCeeEEEEEEEeec
Q 006883 463 RKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALG 542 (627)
Q Consensus 463 ~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~~~~~~mlLCeVALG 542 (627)
. .+++++|++|||||||.+||+|||++||+|+||++|++|||||+||||||++|||++||+++.+++.++|||||||||
T Consensus 478 ~-~~~~~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~~~~~g~llLceVaLG 556 (643)
T PLN03124 478 Q-KFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASAANPDGVLLLCEVALG 556 (643)
T ss_pred H-HhhccCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccCCCCeeEEEEEEEecC
Confidence 9 788899999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred ceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEE
Q 006883 543 DMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQV 622 (627)
Q Consensus 543 k~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~ 622 (627)
++++++.++|++.++|+|+|||+|+|++.|+|+++++++|||+||+|++++++...++|.||||||||++||||||||+|
T Consensus 557 ~~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd~~Qvr~rYLv~v 636 (643)
T PLN03124 557 DMNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYNVDQIRMRYVLQV 636 (643)
T ss_pred CcchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEechhHeEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999988778899999999999999999999999
Q ss_pred EEEeC
Q 006883 623 NFKYK 627 (627)
Q Consensus 623 ~~~~~ 627 (627)
+|+|+
T Consensus 637 kf~~~ 641 (643)
T PLN03124 637 KFNYK 641 (643)
T ss_pred EEeec
Confidence 99996
No 2
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=1.1e-136 Score=1172.59 Aligned_cols=486 Identities=26% Similarity=0.473 Sum_probs=443.3
Q ss_pred eeeeccCccccCCCCCcccCCceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCc--
Q 006883 127 VKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQD-- 204 (627)
Q Consensus 127 ~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~-- 204 (627)
.+...+|+++||+.|+.. ...+|||++++.+|+|+|||||+++|+|+||+||||+++. +.|+||+||||||+.||.
T Consensus 305 ~~~k~k~~~~V~~~~~l~-~~~~~V~~~~~~iYd~~Lnqtd~~~n~NkfY~iQlL~~~~-~~y~~~~rWGRVG~~gq~~~ 382 (815)
T PLN03122 305 AELKLYGKRGVYKDSKLQ-EEGGKIFEKDGILYNCAFSICDLGRGLNEYCIMQLITVPD-SNLHLYYKKGRVGDDPNAEE 382 (815)
T ss_pred chhccccCcCCCcccccc-cCccEEEecCCeEeeeeeeeeeccCCCcceEEEEEEEcCC-CcEEEEeeecccCCcCCCcc
Confidence 445559999999987632 2789999999999999999999999999999999999876 689999999999998755
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHhhcc---cccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcH
Q 006883 205 KIFGPYNLQDTAINEFEQKFFAKTKNH---WSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEP 281 (627)
Q Consensus 205 k~~~~f~s~e~Ai~~F~kkF~eKTgn~---W~~r~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~ 281 (627)
++. +|.++++|+.+|+++|++||||. |++|.+|+++||||+++++||+.+++.... ..........+|+|++
T Consensus 383 ~~~-~~~~~~~Ai~~F~kkF~eKTgn~~~~w~~r~~F~k~pgky~~id~d~~~~~~~~~~----~~~~~~~~~~~skL~~ 457 (815)
T PLN03122 383 RLE-EWEDVDAAIKEFVRLFEEITGNEFEPWEREKKFEKKRLKFYPIDMDDGVDVRAGGL----GLRQLGVAAAHCKLDP 457 (815)
T ss_pred ccC-CCCCHHHHHHHHHHHHHHHhCCCccccccccCccccCCCCceeecccccccccccc----chhhcccccCCCCCCH
Confidence 554 58899999999999999999997 888999999999999999999876543211 0000112234799999
Q ss_pred HHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCC----h--hHHHHhhhhccccccC
Q 006883 282 CVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPD----R--RKLEELSGEFYTVIPH 355 (627)
Q Consensus 282 ~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~----~--~~l~~lsn~fYtlIPh 355 (627)
+||+||++|||+++|+++|++|+||+++|||||||+.||.+||+||++|+++|.+.. . ..+.+|||+|||+|||
T Consensus 458 ~Vq~L~~lIfd~~~m~~~m~e~~~D~~kmPLGKLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~~~dlSnrfYTlIPh 537 (815)
T PLN03122 458 KVANFMKVLCSQEIYRYAMMEMGLDSPDLPMGMLSDFHLKRCEEVLLEFAEFVKSEKETGQKAEAMWLDFSNKWFSLVHS 537 (815)
T ss_pred HHHHHHHHHcCHHHHHHHHHHcCCCcccCCCCcCCHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhccceeccCC
Confidence 999999999999999999999999999999999999999999999999999998752 1 4599999999999999
Q ss_pred CCCCCccccccCCCHHHHHHH-HHHHHHHHhHHHHHHHhhhcc-cccCCCchHHhhcccceeEEcCCCCHHHHHHHHHHh
Q 006883 356 DFGFKKMRDFVIDTPQKLKLK-LEMVEALGEIEVATKLLEDDT-EIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLL 433 (627)
Q Consensus 356 ~fg~~~~~~~~i~~~~~lk~k-~~lle~L~dieiA~~ll~~~~-~~~~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~ 433 (627)
. +||+|++.+.|+++ ++|||+|.|||+|++||++.. ....||||.+|++|+|+|+||+++|+||++|++|+.
T Consensus 538 ~------~ppvi~~~~~lk~k~~~mLe~L~DIeiA~~ll~~~~~~~~~~pLd~~Y~~L~~~i~pLd~~S~eyk~I~~Yl~ 611 (815)
T PLN03122 538 T------RPFVIRDIDELADHAASALETVRDINVASRLIGDMTGSTLDDPLSDRYKKLGCSISPVDKESDDYKMIVKYLE 611 (815)
T ss_pred C------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHHHHHhcCceEEEcCCCCHHHHHHHHHHH
Confidence 2 68999999999999 599999999999999997653 345899999999999999999999999999999999
Q ss_pred cccCCCC---CCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeee
Q 006883 434 NTHAKTH---SAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGV 510 (627)
Q Consensus 434 ~t~~~~h---~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGI 510 (627)
+||+++| ..|+++|.+||+|+|.++ +||. .+++++||+|||||||++||+|||+||||||||+||+|||||||||
T Consensus 612 nT~~~th~~~~~y~l~v~~IF~veR~ge-~rf~-~~~~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGI 689 (815)
T PLN03122 612 KTYEPVKVGDVSYSVSVENIFAVESSAG-PSLD-EIKKLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAI 689 (815)
T ss_pred hcCCCccccCcccceeEeEEEEeccCcc-ccch-hhcCCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCee
Confidence 9999999 578999999999999996 7999 7889999999999999999999999999999999999999999999
Q ss_pred eeccccccccccccCCCCCCeeEEEEEEEeecce-eeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCC
Q 006883 511 YFADMFSKSANYCYASPSATAGVLLLCEVALGDM-SELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLG 589 (627)
Q Consensus 511 YFAd~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~-~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~G 589 (627)
|||||+||||+||+++.++++|+|||||||||++ ++++.+++++.++|+|+|||+|+|++.|||++.+++.|||+||+|
T Consensus 690 YFAD~~SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~G 769 (815)
T PLN03122 690 VCSDAAAEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCG 769 (815)
T ss_pred EecchhhhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhhhccCCCCceeeecCCCcCCCccceecCCCeEEeCC
Confidence 9999999999999998889999999999999997 799999988899999999999999999999999999999999999
Q ss_pred CccccCCCCccCcCceEEEeecCceeeeeEEEEEEEeC
Q 006883 590 KPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 627 (627)
Q Consensus 590 k~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~~~~~ 627 (627)
+++++....++|.||||||||++||||||||+|+|+|+
T Consensus 770 k~~~~~~~~~~L~yNEYIVYDvaQvrirYL~~vkf~~~ 807 (815)
T PLN03122 770 RLIPSEHKDSPLEYNEYAVYDPKQVSIRFLVGVKYEEK 807 (815)
T ss_pred CCccCCCCCcccccCceEEEchhHEEEEEEEEEEeecc
Confidence 99998777789999999999999999999999999985
No 3
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=7.9e-133 Score=1161.18 Aligned_cols=482 Identities=41% Similarity=0.757 Sum_probs=447.8
Q ss_pred cceeeeeccCccccCCCCCcccCCceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeecccc--C
Q 006883 124 EKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGM--K 201 (627)
Q Consensus 124 ~~~~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~--~ 201 (627)
.+.+++..||+++||+.++ +.+.+|||++++.+|+||||+||+++|+|+||+||||+++..+.|+||+||||||+ .
T Consensus 487 ~~~~~~~~kg~~~Vd~~~~--~~~~~hVyed~g~iY~~~Ln~td~~~n~NkfY~iQLL~~~~~~~y~v~~rWGRVG~~~i 564 (981)
T PLN03123 487 SSMVTVKVKGRSAVHEASG--LQDTGHILEDGKSIYNTTLNMSDLSTGVNSYYILQIIEEDKGSDCYVFRKWGRVGNEKI 564 (981)
T ss_pred cccccccccCCccCCcccc--cccCceEEecCCeEeeeeEecccccCCCcceEEEEEEEeCCCCeEEEEEEecccCCccc
Confidence 3456667899999999865 55789999999999999999999999999999999999988899999999999997 3
Q ss_pred CCceeecCCCCHHHHHHHHHHHHHHHhhccc---ccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCC
Q 006883 202 GQDKIFGPYNLQDTAINEFEQKFFAKTKNHW---SNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTK 278 (627)
Q Consensus 202 G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W---~~r~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~sk 278 (627)
||+++. +| ++++|+.+|+++|++||||.| ++|.+|+++||||+||++||+.++.... . .....+|+
T Consensus 565 g~~~l~-~~-~~~~A~~~F~kkF~eKTgn~W~~~~~r~~F~k~pgKy~~ie~dy~~~~~~~~---~------~~~~~~sk 633 (981)
T PLN03123 565 GGNKLE-EM-SKSDAIHEFKRLFLEKTGNPWESWEQKTNFQKQPGKFYPLDIDYGVNEQPKK---K------AASGSKSN 633 (981)
T ss_pred CccccC-CC-CHHHHHHHHHHHHHHHhcCcccchhhcccccccCCceeEEEeecCcccchhh---h------cccCCcCC
Confidence 999975 56 799999999999999999998 6899999999999999999987654321 0 11234699
Q ss_pred CcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh------hHHHHhhhhcccc
Q 006883 279 LEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR------RKLEELSGEFYTV 352 (627)
Q Consensus 279 L~~~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~------~~l~~lsn~fYtl 352 (627)
|+++||+||++|||+++|+++|++|+||+.+||||+||++||.+||+||++|+++|+.... ..|.+|||+|||+
T Consensus 634 L~~~vq~L~klIfd~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~l~~lSn~fYtl 713 (981)
T PLN03123 634 LAPRLVELMKMLFDVETYRAAMMEFEINMSEMPLGKLSKANIQKGFEALTEIQNLLKENDQDPSIRESLLVDASNRFFTL 713 (981)
T ss_pred CCHHHHHHHHHHhCHHHHHHHHHHccCCcccCCCccccHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhccEec
Confidence 9999999999999999999999999999999999999999999999999999999976532 5699999999999
Q ss_pred ccCCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCchHHhhcccceeEEcCCCCHHHHHHHHHH
Q 006883 353 IPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYL 432 (627)
Q Consensus 353 IPh~fg~~~~~~~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~ 432 (627)
|||+ +||+|++.++|++|++|||+|.|||+|++||+.+. +..||||.+|++|+|+|+||+++|+||++|++|+
T Consensus 714 IPh~------~pp~I~~~~~ik~k~~lLe~L~dieiA~~ll~~~~-~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~Yl 786 (981)
T PLN03123 714 IPSI------HPHIIRDEDDLKSKVKMLEALQDIEIASRLVGFDV-DEDDSLDDKYKKLHCDISPLPHDSEDYKLIEKYL 786 (981)
T ss_pred CCCC------CCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccC-cCCCchHHHHHhcCCeEEECCCCCHHHHHHHHHH
Confidence 9996 47899999999999999999999999999997653 4589999999999999999999999999999999
Q ss_pred hcccCCCCCCccccccceEEEeechHhHHHHHHhc-cCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeee
Q 006883 433 LNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFS-NSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVY 511 (627)
Q Consensus 433 ~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~~-~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIY 511 (627)
.+||+++|..|+++|.+||+|+|.+|.+||. .|+ .++||+|||||||.+||+|||++||||+||+||++|||||+|||
T Consensus 787 ~nT~~~th~~y~l~v~~IF~v~r~gE~~rf~-~~~~~~~Nr~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIY 865 (981)
T PLN03123 787 LTTHAPTHTDWSLELEEVFSLEREGEFDKYA-PYKEKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVY 865 (981)
T ss_pred HhcCCCccccccceeeEEEEecccccccchh-hHhhcCCCceEEEcCCCcccHHHHhhccCccCCccccccCccccceeE
Confidence 9999999999999999999999999999999 664 68999999999999999999999999999999999999999999
Q ss_pred eccccccccccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCc
Q 006883 512 FADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKP 591 (627)
Q Consensus 512 FAd~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~ 591 (627)
|||++||||+||++..+++.|+|||||||||++++++.++| +.++|.|+|||+|+|++.|+|++++++.|||+||+|++
T Consensus 866 FAD~~SKSanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~-~~~~p~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~ 944 (981)
T PLN03123 866 FADLVSKSAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKY-MDKPPRGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKP 944 (981)
T ss_pred ecchhhhhhhhhcccCCCCceEEEEEEEecCChhhhccccc-cccCCCCceeeeecCCCCCCcccceecCCceEeeCCCC
Confidence 99999999999999888999999999999999999999988 58899999999999999999999999999999999999
Q ss_pred cccCCCCccCcCceEEEeecCceeeeeEEEEEEEeC
Q 006883 592 KEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 627 (627)
Q Consensus 592 ~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~~~~~ 627 (627)
++.....++|.||||||||++||||||||+|+|+|+
T Consensus 945 ~~~~~~~~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~ 980 (981)
T PLN03123 945 VPSKVKASELMYNEYIVYNTAQVKLQFLLKVRFKHK 980 (981)
T ss_pred ccCcccCCccccCceEEechhHEEEEEEEEEEeecc
Confidence 998877789999999999999999999999999996
No 4
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=100.00 E-value=2.5e-97 Score=787.00 Aligned_cols=344 Identities=58% Similarity=0.964 Sum_probs=329.0
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh--hHHHHhhhhccccc
Q 006883 276 NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR--RKLEELSGEFYTVI 353 (627)
Q Consensus 276 ~skL~~~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~--~~l~~lsn~fYtlI 353 (627)
+|+|+++||+||++|||+++|+++|++|++|+.+||||+||++||.+||+||++|+++|++... ..+.+|||+|||+|
T Consensus 1 ~skL~~~vq~l~~~I~d~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~~i~~~l~~~~~~~~~l~~ls~~FYtlI 80 (347)
T cd01437 1 KSKLDKPVQELIKLIFDVEMMKKAMTELKIDASKMPLGKLSKNQIQKGYEVLKEIEEALKRGSSQGSQLEELSNEFYTLI 80 (347)
T ss_pred CCCcCHHHHHHHHHHcCHHHHHHHHHHcCCCcccCCCcccCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhC
Confidence 3899999999999999999999999999999999999999999999999999999999988765 78999999999999
Q ss_pred cCCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCchHHhhcccceeEEcCCCCHHHHHHHHHHh
Q 006883 354 PHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLL 433 (627)
Q Consensus 354 Ph~fg~~~~~~~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~ 433 (627)
||+||++ +||+|+|.+.|++|++|||+|.||++|++|++.+.....||+|.+|++|+|+|+||+++|+||++|++||.
T Consensus 81 Ph~fg~~--~p~~i~~~~~l~~k~~lle~L~die~a~~l~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~ 158 (347)
T cd01437 81 PHDFGMS--KPPVIDNEELLKAKRELLEALRDIEIASKLLKDDEDDSDDPLDANYEKLKCKIEPLDKDSEEYKIIEKYLK 158 (347)
T ss_pred CccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhHHHHcCeeEEECCCCChHHHHHHHHHH
Confidence 9999997 46899999999999999999999999999998776666899999999999999999999999999999999
Q ss_pred cccCCCCCCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeec
Q 006883 434 NTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFA 513 (627)
Q Consensus 434 ~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFA 513 (627)
+||+++| .|+++|.+||+|+|.+++++|. .+++.+|++|||||||.+||++||++||+++|++++.+|+|||+|||||
T Consensus 159 ~t~~~~~-~~~~~V~~If~i~r~~e~~~F~-~~~~~~n~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g~mfGkGIYFA 236 (347)
T cd01437 159 NTHAPTT-EYTVEVQEIFRVEREGETDRFK-PFKKLGNRKLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFGKGIYFA 236 (347)
T ss_pred hcCCCCC-CcceeEEEEEEecCCCchhhhH-HhhccCCeEEEEcCCChhhHHHHHhcCCCcCccccccCCccccceEeec
Confidence 9999886 4899999999999999999999 6778999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccc
Q 006883 514 DMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKE 593 (627)
Q Consensus 514 d~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~ 593 (627)
|++|||++||+++.+++.++||||+||||+++++..+++++.++|+|+|||+|+|++.|+|+++.+..|||+||+|++++
T Consensus 237 d~~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~g~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~ 316 (347)
T cd01437 237 DMFSKSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPKGKHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVP 316 (347)
T ss_pred CchHhhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCCCceeeEeccCCCCCchhheeccCCeEeeCCcccc
Confidence 99999999999988789999999999999999999999998889999999999999999999998889999999999998
Q ss_pred cCCC-CccCcCceEEEeecCceeeeeEEEEE
Q 006883 594 QLNS-KGHLLYNEYIVYSVDQIRMRYVVQVN 623 (627)
Q Consensus 594 ~~~~-~~~l~ynEYIVYd~~Qir~rYLV~~~ 623 (627)
.... .++|.||||||||++||||||||+|+
T Consensus 317 ~~~~~~~~l~~nEyiVYd~~Qir~rYLv~vk 347 (347)
T cd01437 317 SGHKTDTSLLYNEYIVYDVAQVRLKYLLEVK 347 (347)
T ss_pred CCcCCCcccccCCeEeechhHEEEEEEEEeC
Confidence 7776 67999999999999999999999985
No 5
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-70 Score=606.97 Aligned_cols=481 Identities=40% Similarity=0.566 Sum_probs=422.2
Q ss_pred eeeeccCccccCCCCCcccCCceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCcee
Q 006883 127 VKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKI 206 (627)
Q Consensus 127 ~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~ 206 (627)
+.+...+...+|++++.......++...+..+|...|+++++..++|+||.+|+++.+....+..|.+||||+..|++.+
T Consensus 38 k~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~v~~~~~s~~ 117 (531)
T KOG1037|consen 38 KELKLIFDGDVDKWKHTSCFLKKDHLIRGPEVKVPGLNQTNVENENNKEYTEEELEWDEQQKKRKTVEEGGVTGKGQSGI 117 (531)
T ss_pred hhhhhccccccCcccccccccCcccccccccccccccccccccccccchhhhhhhhcccccceeeeeeeccccccccccc
Confidence 33444555556776665544566777788899999999999999999999999999877778899999999999999888
Q ss_pred ecCCCCHHHHHHHHHHHHHHHhhcccccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcHHHHHH
Q 006883 207 FGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKF 286 (627)
Q Consensus 207 ~~~f~s~e~Ai~~F~kkF~eKTgn~W~~r~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~l 286 (627)
.....+...|...|+..|..+|.+.|+.|..|+.++++|.+-+.... ....+.....++..+.|+..|+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ld~~~~~~ 188 (531)
T KOG1037|consen 118 VKKSKSLDKAKKPFEIKSYKLTKNGMETRDEFIPLGHSYEEEDKKNF---------SKCRSCFSPIKTDSGRLDMSVKEL 188 (531)
T ss_pred chhhhhhhhccchhhhhcchhhhhhhhhhhhhhcccchhHHHhhhhh---------cccccccChhhccccccccccccc
Confidence 77667888999999999999999999999999999999933211110 010111111222334599999999
Q ss_pred HHHHcCHHHHHHHHHHhccCCC-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh-hHHHHhhhhccccccCCCCCCcccc
Q 006883 287 ISLICNISMMKQLMMEIGYNAN-KLPLGKLSKSTILKGYDVLKRIADVIHPPDR-RKLEELSGEFYTVIPHDFGFKKMRD 364 (627)
Q Consensus 287 i~lI~n~~~~~~~m~e~~~D~~-kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~-~~l~~lsn~fYtlIPh~fg~~~~~~ 364 (627)
+..||++.+|..+|++|++|.. ++|+|++|+.+|.++|++|..+.+++..... +.+.+++++||++|||+||+..+
T Consensus 189 ~~~i~~~~~m~~~~~~~~~~~~l~~p~g~~s~~~i~~~~~~~~~~k~~~~~~~~~~~l~~~~~~f~~~ip~~~~~~~~-- 266 (531)
T KOG1037|consen 189 IKNIFDVEEMIKALMEMQLDHKLKKPLGKLSLNDINKAYELLLKVKEALKLGKIGEQLAKASTEFYTLIPHDFGMRKP-- 266 (531)
T ss_pred ccccccHHHHHHHHHhhccchhhhCCCCccchhhhhhhhhhhhhhhcccccCCcHHHHHHHhhhhhhhcCCCCCcCCC--
Confidence 9999999999999999999999 9999999999999999999999999987754 55999999999999999998753
Q ss_pred ccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhccc-cc-CCCchHHhhcccceeEEcCCCCHHHHHHHHHHhcccCCCCCC
Q 006883 365 FVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTE-IQ-ADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSA 442 (627)
Q Consensus 365 ~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~-~~-~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~ 442 (627)
++ .+.++|++|.+|++|+.+...... .. .+|+|.+|+.|+|.+.+++.+++||++|.+|+.+++..+|..
T Consensus 267 ~~--------~~~~~le~~~~i~~a~~~~~~~~~~~~~~~Pl~~~y~~l~c~~~~~~~~~~e~kmi~~~~~~~~~~~~~~ 338 (531)
T KOG1037|consen 267 PN--------EKQEALEALLDIELAYGLRKGDDVDATCDDPLDKHYKDLKCKIEKLDKDSEEFKMIAQYVEKTHAKTSTV 338 (531)
T ss_pred ch--------hhHHHHHHhhhhhhhhhhhhccccccCCCChhhhHHHhhhhhhccccccchhHHHHHHHHHhhccccCcc
Confidence 22 889999999999999999876543 44 789999999999999999999999999999999999999988
Q ss_pred ccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeecccccccccc
Q 006883 443 YSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANY 522 (627)
Q Consensus 443 ~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Y 522 (627)
+.+++.+|+++.+.++..+|. ....+.|+++|||||+..|+++||+.|++++|+++|++|||||+||||||++++|++|
T Consensus 339 ~~~~~~~l~k~~~~~e~~~~~-~~~~~~~r~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa~~~sks~~y 417 (531)
T KOG1037|consen 339 KVVQIADLKKVNEKNEADRKV-DISELINRQLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYMFGKGIYFADAASKSANY 417 (531)
T ss_pred CceeehhHHHhhhcccccccc-cCcccccccchhcccceeeeeccccCCceecCCCCCceeeccccceEeeeeccccccc
Confidence 888899999999999999998 7788999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccccCC--CCcc
Q 006883 523 CYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLN--SKGH 600 (627)
Q Consensus 523 c~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~--~~~~ 600 (627)
|++....+.++||+|+||||+++.+..+.+..+.+|+|+|||+|+|++.|+++....+++++.+|+|.++.... ....
T Consensus 418 ~~~~~~k~~~~ll~~~~alg~~~~~~~~~~~~~~~~~~~~sv~~~g~~~p~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (531)
T KOG1037|consen 418 CVTMKGKPTGHLLLCDVALGKEQDLVESIPSLTELPAGKDSVKGVGKTAPDSTLSEDLEDDVDVPLGKIKLTEEPHKDSL 497 (531)
T ss_pred ccccccCchhhhhhhhhhccchhhhhcCCcccccCCCCCcchhhhcccCCCchhhcccccccccccccccccccccchhh
Confidence 99988889999999999999999999988888889999999999999999999999999999999998776554 4456
Q ss_pred CcCceEEEeecCceeeeeEEEEEEEeC
Q 006883 601 LLYNEYIVYSVDQIRMRYVVQVNFKYK 627 (627)
Q Consensus 601 l~ynEYIVYd~~Qir~rYLV~~~~~~~ 627 (627)
+.||||+||+++|++++|+++++++|.
T Consensus 498 l~y~e~~v~~~~q~~~~~~~kv~~~~~ 524 (531)
T KOG1037|consen 498 LEYNEYIVYNVEQVQIRYLVKVKMDYS 524 (531)
T ss_pred hhhhhhhhccHhhhceeeeeEeehhhh
Confidence 779999999999999999999999873
No 6
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=100.00 E-value=6e-46 Score=369.26 Aligned_cols=206 Identities=41% Similarity=0.614 Sum_probs=184.7
Q ss_pred ccceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhh
Q 006883 411 LHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQ 490 (627)
Q Consensus 411 L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~ 490 (627)
|+|+|++|+++|+||+.|+++|.+++.+.|. +.++|.+||+|+++..+++|. ..+..+|+++|||||+.+|+.+||++
T Consensus 1 L~~~l~~l~~~s~ey~~I~~~f~~~~~~~~~-~~~~I~~I~~i~~~~~~~~f~-~~~~~~n~~~L~HGt~~~~~~~I~~~ 78 (206)
T PF00644_consen 1 LNCELVPLEPDSEEYKEIEKYFKKTWKPVHK-YKPKIKKIFRIQNPSLWERFE-EKKKEGNERLLFHGTSAENICSILRN 78 (206)
T ss_dssp TTEEEEEEETTSHHHHHHHHHHHHTSTSTTT-EEEEEEEEEEEEEHHHHHHHH-HHHHSSSEEEEEEEETGGGHHHHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHhHCCCCCC-CCCEEEEEEEEcChhHHHHHH-HHHhcCCceEEeCCCChhhccchhcC
Confidence 7999999999999999999999999987664 678999999999999999999 55668899999999999999999999
Q ss_pred CCCCCCCCCCCCceeeeeeeeeccccccccccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCc
Q 006883 491 GLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQT 570 (627)
Q Consensus 491 GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~ 570 (627)
||+++++.++.+|.+||+|||||+++++|+.||.+...++.++||||+||||+++++...+. ...+|+|+|||+|.|+.
T Consensus 79 G~~~~~~~~~~~g~~fG~GiYfs~~~s~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~-~~~~~~g~~sv~~~~~~ 157 (206)
T PF00644_consen 79 GFKIDPRKASRNGGMFGKGIYFSDNSSKSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNP-MTSPPPGYDSVKGVGSK 157 (206)
T ss_dssp SS---TTTSCGGCSTTSSSEEEBSSHHHHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCT-GSSGCTTESEEEECESE
T ss_pred CCccCccccccCCceeeeEEEeCcchhhhcccCCCccCCcceeeeEEEEEeccceeeccCcc-cccccCCcceecCCCcc
Confidence 99998888889999999999999999999999998666789999999999999999998888 78999999999999987
Q ss_pred CCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEEEE
Q 006883 571 APDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNF 624 (627)
Q Consensus 571 ~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~~ 624 (627)
.| ...+..+| +|.|++.........+.+|||||||++||+|+|||+|+|
T Consensus 158 ~~---~~~~~~~g--~p~~~~~~~~~~~~~~~~~eyVVy~~~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 158 TP---EDTIDEDG--VPSGKGYVSEYDGSSLNPNEYVVYDNSQVYPEYLITYKF 206 (206)
T ss_dssp EE---GGEEEETT--ETTSSEEESCEESSSSSCSEEEESSGGGEEEEEEEEEEE
T ss_pred CC---ccccccCC--CCCCCCccCccCCCccCCCEEEEEcccceeeEEEEEEEC
Confidence 77 45566688 999988655555566999999999999999999999987
No 7
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=4.1e-36 Score=299.19 Aligned_cols=181 Identities=28% Similarity=0.438 Sum_probs=148.1
Q ss_pred cccceeEEcCCCCHHHHHHHHHHhcccCCCCCC-------ccccccceEEEeechHhHHHHHH-------hccCCCceEE
Q 006883 410 RLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSA-------YSVDIVQIFRVEREGETERFRKQ-------FSNSKNRMLL 475 (627)
Q Consensus 410 ~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~-------~~~~I~~IfrV~r~~e~~rF~~~-------~~~~~N~~LL 475 (627)
+.++.|..|.+++.||+.|++.|+.|....|.+ .+.+|..|-||+++..|++|... ..+..|+++|
T Consensus 13 ~~~~~~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RIQN~~Lw~~y~~kk~~~~~~~~~~~ne~~L 92 (223)
T cd01438 13 NQGTILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKVVNKKLRERYCHRQKEIAEENHNHHNERML 92 (223)
T ss_pred CccceEEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEecCCHHHHHHHHHHHHHHHHhhCCCcceEEE
Confidence 567889999999999999999999997654432 25789999999999999999831 1246799999
Q ss_pred eecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCC------CCC-------eeEEEEEEEeec
Q 006883 476 WHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP------SAT-------AGVLLLCEVALG 542 (627)
Q Consensus 476 wHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~------~~~-------~~~mlLCeVALG 542 (627)
||||+..| +|+++||+.+- +.+|+|||+|||||+++|||++||++.. ..+ .++||||+|+||
T Consensus 93 fHGt~~~~--~I~~~GFd~r~---~~~g~~fGkGiYFA~~askS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVlLG 167 (223)
T cd01438 93 FHGSPFIN--AIIHKGFDERH---AYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVTLG 167 (223)
T ss_pred eecCcchh--HHHHhCCCccc---cccCceeeeeeeeccchhhhccccccccccccCcccccccccccceeEEEEEEEec
Confidence 99999877 89999997542 2379999999999999999999998631 111 479999999999
Q ss_pred ceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEE
Q 006883 543 DMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQV 622 (627)
Q Consensus 543 k~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~ 622 (627)
+++....+++ ...+|+|+|||+|. |. .+.+.||||||||.+|++|+|||+|
T Consensus 168 k~~~~~~~~~-~~~~P~G~dSv~g~----Ps------------------------~~~~~~~EfVVyd~~Q~YPeYLI~y 218 (223)
T cd01438 168 KSFLQFSAMK-MAHAPPGHHSVIGR----PS------------------------VNGLAYAEYVIYRGEQAYPEYLITY 218 (223)
T ss_pred ceeeccCCcc-cCCCCCCCcceEcC----CC------------------------CCCcccCEEEEECCCcEeeEEEEEE
Confidence 9988766664 46789999999873 21 1246689999999999999999998
Q ss_pred EE
Q 006883 623 NF 624 (627)
Q Consensus 623 ~~ 624 (627)
+.
T Consensus 219 ~~ 220 (223)
T cd01438 219 QI 220 (223)
T ss_pred Ee
Confidence 74
No 8
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=100.00 E-value=6.1e-36 Score=278.80 Aligned_cols=132 Identities=51% Similarity=0.829 Sum_probs=116.7
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCC-CChhHHHHhhhhcccccc
Q 006883 276 NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHP-PDRRKLEELSGEFYTVIP 354 (627)
Q Consensus 276 ~skL~~~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~-~~~~~l~~lsn~fYtlIP 354 (627)
+|+|+++||+||++|||+++|+++|.+++||+.+||||+||++||.+||+||++|+++|.. ...+.+.++||+|||+||
T Consensus 1 ~skL~~~Vq~Li~~If~~~~~~~~m~e~~~D~~kmPLGkLS~~qI~~g~~iL~~i~~~l~~~~~~~~i~~lsn~fYtlIP 80 (133)
T PF02877_consen 1 KSKLPPEVQDLIKLIFDVEMMKQAMKEMGYDTKKMPLGKLSKEQIEKGYEILKEIEELLKEQERRSKIEDLSNRFYTLIP 80 (133)
T ss_dssp --SSTHHHHHHHHHHT-HHHHHHHHHHTTB-TTTSTGGGB-HHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCchhcCHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHCC
Confidence 4899999999999999999999999999999999999999999999999999999999983 445899999999999999
Q ss_pred CCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCchHHhh
Q 006883 355 HDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQ 409 (627)
Q Consensus 355 h~fg~~~~~~~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~~~~~pld~~Y~ 409 (627)
|+||++ +||+|+|.+.|+++++||++|.||++|++++.++.....||+|++|+
T Consensus 81 h~fg~~--~~~~I~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~plD~~Y~ 133 (133)
T PF02877_consen 81 HNFGRS--RPPVIDTEEKLKEKLELLEALLDIEIASKLLKDAQDEKINPLDYQYK 133 (133)
T ss_dssp B-STTS---S--STSHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSTHHHHHHH
T ss_pred CcccCC--CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhcC
Confidence 999986 57899999999999999999999999999999877666899999996
No 9
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-2 and similar proteins. Similar to PARP-1, PARP-2 is ubiquitously expressed and it
Probab=100.00 E-value=6.3e-36 Score=266.28 Aligned_cols=102 Identities=51% Similarity=0.876 Sum_probs=97.5
Q ss_pred EEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCC-CHHHHHHHHHHHHHHHh
Q 006883 150 HVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYN-LQDTAINEFEQKFFAKT 228 (627)
Q Consensus 150 ~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~-s~e~Ai~~F~kkF~eKT 228 (627)
|||++++.+|+|||++||+++|+|+||+||||+++..+.|+||+||||||+.||+++.+ |+ ++++|+++|+++|++||
T Consensus 1 hVy~~~~~vy~a~Ln~td~~~n~Nkfy~lQlle~~~~~~y~~~~rWGRVG~~G~~~l~~-~~~~l~~A~~~F~k~F~~KT 79 (103)
T cd08003 1 HVYEEGDDVYDAMLNQTNIQQNNNKYYIIQLLEDDAEKIYSVWFRWGRVGKKGQSSLVP-CGSDLEQAKSLFEKKFLDKT 79 (103)
T ss_pred CEEecCCeEEEEEEEecccCCCCcceEEEEEEEeCCCCeEEEEEeEccccccccceecc-CCCCHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999998888999999999999999999875 55 49999999999999999
Q ss_pred hcccccCCCCccCCCCceeeeecc
Q 006883 229 KNHWSNRRQFTSYPKCYTWLEMDY 252 (627)
Q Consensus 229 gn~W~~r~~F~~~pgKY~~ve~d~ 252 (627)
||+|++|.+|+++||||++|||||
T Consensus 80 gn~W~~R~~f~k~pgKY~~le~dy 103 (103)
T cd08003 80 KNEWEDRANFEKVAGKYDLLEMDY 103 (103)
T ss_pred CCchhhccCCCCCCCCceEEeecC
Confidence 999999999999999999999997
No 10
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-3 and similar proteins, including Arabidopsis thaliana PARP-
Probab=100.00 E-value=4.4e-33 Score=247.02 Aligned_cols=99 Identities=60% Similarity=0.992 Sum_probs=93.6
Q ss_pred ceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHH
Q 006883 148 SYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAK 227 (627)
Q Consensus 148 ~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~kkF~eK 227 (627)
.+|||+ +|+|||++||+++|+|+||+||||+++ +.|+||++|||||+.||+++..+++++++|+++|+++|++|
T Consensus 2 ~~~~~~----~y~~~Ln~t~~~~n~NkfY~lQll~~~--~~y~v~~~WGRVG~~Gq~~~~~~~~~l~~A~~~F~k~F~~K 75 (100)
T cd08002 2 GAEVDE----DYDCMLNQTNIGHNNNKFYVIQLLESG--KEYYVWNRWGRVGEKGQNKLKGPWDSLEGAIKDFEKKFKDK 75 (100)
T ss_pred CcEEeE----EEEEEEEcccccCCCeeEEEEEEEecC--CEEEEEEEECccCCcCcceeccCCCCHHHHHHHHHHHHHHH
Confidence 478995 699999999999999999999999986 89999999999999999998776677999999999999999
Q ss_pred hhcccccCCCCccCCCCceeeeecc
Q 006883 228 TKNHWSNRRQFTSYPKCYTWLEMDY 252 (627)
Q Consensus 228 Tgn~W~~r~~F~~~pgKY~~ve~d~ 252 (627)
|||+|++|.+|+|+||||++|||||
T Consensus 76 Tgn~W~~R~~f~k~~gky~~ie~dy 100 (100)
T cd08002 76 TKNNWEDRENFVPHPGKYTLIEMDY 100 (100)
T ss_pred hCCchhhccCCCcCCCcceEEEecC
Confidence 9999999999999999999999997
No 11
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of vertebrate PARP-1 and similar proteins, including Arabidopsis thaliana
Probab=99.98 E-value=3.6e-32 Score=243.30 Aligned_cols=103 Identities=34% Similarity=0.667 Sum_probs=98.7
Q ss_pred eEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeecccc-CCCceeecCCCCHHHHHHHHHHHHHHH
Q 006883 149 YHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGM-KGQDKIFGPYNLQDTAINEFEQKFFAK 227 (627)
Q Consensus 149 ~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~-~G~~k~~~~f~s~e~Ai~~F~kkF~eK 227 (627)
+|||++++.+|+|+|+++|+.+|+|+||+||||+++.++.|+||++|||||+ .||+++. +|+++++|+.+|+++|++|
T Consensus 1 ~~v~~~~~~~y~~~L~~~d~~~n~n~fY~lQll~~~~~~~y~~~~~WGRiG~~~Gq~~~~-~~~~~~~A~~~F~k~f~~K 79 (104)
T cd08001 1 AHVLEEGGNLYSAVLGLVDIQTGTNSYYKLQLLEHDKGNRYWVFRSWGRVGTTIGGNKLE-EFSSLEEAKMAFEELYEEK 79 (104)
T ss_pred CeEEeCCCcEEEEEEECcccCCCCcceEEEEEEEECCCCEEEEEEEECccCCccCceEcc-CCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999988899999999999999 6998865 6899999999999999999
Q ss_pred hhcccccCCCCccCCCCceeeeecc
Q 006883 228 TKNHWSNRRQFTSYPKCYTWLEMDY 252 (627)
Q Consensus 228 Tgn~W~~r~~F~~~pgKY~~ve~d~ 252 (627)
|||+|++|.+|+++||||++|++||
T Consensus 80 Tgn~w~~r~~f~k~~~ky~~~~~d~ 104 (104)
T cd08001 80 TGNDFENRKNFKKKPGKFYPLDIDY 104 (104)
T ss_pred hCCCCccccCCcccCCcEeEEEecC
Confidence 9999999999999999999999986
No 12
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins and histones. Higher eukaryotes contain several PARPs and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. Poly-ADP-ribosylation was thought to be a reversible post-translational covalent modification that serves as a regulator
Probab=99.96 E-value=3.7e-30 Score=229.53 Aligned_cols=101 Identities=49% Similarity=0.898 Sum_probs=93.4
Q ss_pred EEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhc
Q 006883 151 VFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKN 230 (627)
Q Consensus 151 V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn 230 (627)
||.+.+.+|+|+|+++|++.|+|+||+|||++++.++.|+||++|||||..||+++. +|.++++|+++|+++|++||||
T Consensus 2 ~~~~~~~~y~~~L~~~d~~~n~n~fy~lql~~~~~~~~y~v~~~WGRVG~~Gq~~~~-~~~~~~~A~~~F~k~f~~Kt~~ 80 (102)
T cd07997 2 VYGDIATVYDATLNQTDISNNNNKFYKIQILESKGPNTYALFTRWGRVGERGQSQLT-PFGSLESAIKEFEKKFKDKTGN 80 (102)
T ss_pred cccccCcEEEEEEEeeccCCCCcceEEEEEEEcCCCCeEEEEEEEccCCCcCceeec-CCCCHHHHHHHHHHHHHHHHCC
Confidence 444433789999999999999999999999998777899999999999999999975 6899999999999999999999
Q ss_pred ccccCCCCccCCCCceeeeecc
Q 006883 231 HWSNRRQFTSYPKCYTWLEMDY 252 (627)
Q Consensus 231 ~W~~r~~F~~~pgKY~~ve~d~ 252 (627)
+|++|.+|.++||||++|++||
T Consensus 81 ~w~~r~~f~k~~~ky~~i~~d~ 102 (102)
T cd07997 81 EWENRPLFKKQPGKYALVELDY 102 (102)
T ss_pred ccccccccccCCCceeEEeecC
Confidence 9999999999999999999986
No 13
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=99.92 E-value=1.2e-25 Score=206.50 Aligned_cols=112 Identities=26% Similarity=0.334 Sum_probs=91.2
Q ss_pred EEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCCC-CCeeEEEEEEEeecceeeeccccC
Q 006883 474 LLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPS-ATAGVLLLCEVALGDMSELLYANY 552 (627)
Q Consensus 474 LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~-~~~~~mlLCeVALGk~~e~~~~~~ 552 (627)
||||||+.+++..|+++||++++.. .+|.|||+|||||+++++|++||..... .+.+.||||+|+||+... ...
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g--~~~~~~G~GiYFA~~~s~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~---~~~ 75 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCG--KHGTMYGKGSYFAKNASYSHQYSKKSPKADGLKEMFLARVLTGDYTQ---GHP 75 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCC--CCCCccCCeeecccChhhhhcccccCcCCCCcEEEEEEEEEecceec---CCC
Confidence 6999999999999999999998753 3689999999999999999999987542 478999999999999643 333
Q ss_pred CCCCCC--------CCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEE
Q 006883 553 DADKLP--------DGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQV 622 (627)
Q Consensus 553 ~~~~~p--------~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~ 622 (627)
....|| .+|||+.+- ....++||||+.+|++|.|||++
T Consensus 76 ~~~~pP~~~~~~~~~~yDS~vd~--------------------------------~~~p~~~Vvf~~~q~yPeYlI~y 121 (121)
T cd01439 76 GYRRPPLKPSGVELDRYDSCVDN--------------------------------VSNPSIFVIFSDVQAYPEYLITY 121 (121)
T ss_pred cccCCCCccCCCCCCCccceeCC--------------------------------CCCCCEEEEEeCCccceeEEEEC
Confidence 344454 667777641 11257999999999999999975
No 14
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.92 E-value=1.4e-25 Score=210.22 Aligned_cols=120 Identities=29% Similarity=0.331 Sum_probs=103.7
Q ss_pred EEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCCC----------------CCeeEEEEE
Q 006883 474 LLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPS----------------ATAGVLLLC 537 (627)
Q Consensus 474 LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~----------------~~~~~mlLC 537 (627)
+|||||+..||.+|+++||+++++.++.+|+|||+|||||+++++|++||.++.. ...++|++|
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 80 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLTLG 80 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCChHHhhhhhcccCCcccccccccccccccccceeEEEEE
Confidence 5899999999999999999999988888899999999999999999999998642 255899999
Q ss_pred EEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeec-Cceee
Q 006883 538 EVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSV-DQIRM 616 (627)
Q Consensus 538 eVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~-~Qir~ 616 (627)
+|++|++.+.........++|+|++|+.|++.+.+ +..+.++|||||+. +|++|
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~e~VV~~~~~Qv~~ 135 (137)
T cd01341 81 VMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCR-------------------------DALLLPREYIIFEPYSQVSI 135 (137)
T ss_pred EeccccccccccccccccCCCCCCeEEEccccccc-------------------------chhhCCCeEEEecchhhcee
Confidence 99999998776655555677999999999876542 23567999999999 99999
Q ss_pred ee
Q 006883 617 RY 618 (627)
Q Consensus 617 rY 618 (627)
||
T Consensus 136 ~Y 137 (137)
T cd01341 136 RY 137 (137)
T ss_pred cC
Confidence 98
No 15
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=99.85 E-value=5.3e-21 Score=164.70 Aligned_cols=82 Identities=51% Similarity=0.871 Sum_probs=75.7
Q ss_pred CCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhccccc
Q 006883 155 DNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSN 234 (627)
Q Consensus 155 ~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W~~ 234 (627)
++.+|+++|+++|+.+|+|+||.|||+++. .+.|+||++|||||..|++++. +|+++++|+++|+++|++||+++|.+
T Consensus 2 ~~~~~~~~L~~~d~~~n~nkfy~iql~~~~-~~~~~v~~~wGRiG~~g~~~~~-~~~s~~~A~~~f~k~~~~Kt~~gy~~ 79 (84)
T smart00773 2 GGEIYDVYLNQTDLASNNNKFYRIQLLEDD-FGGYSVWRRWGRIGTNGQTKLE-TFDSLEDAIKEFEKLFKEKTKNGYEE 79 (84)
T ss_pred CCceeEEEEEccccccCCeeEEEEEEEEcC-CCCEEEEEEeeecCCCCceeeE-cCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 457899999999999999999999999864 4579999999999999999976 68999999999999999999999999
Q ss_pred CCCC
Q 006883 235 RRQF 238 (627)
Q Consensus 235 r~~F 238 (627)
|..|
T Consensus 80 r~~~ 83 (84)
T smart00773 80 RGKF 83 (84)
T ss_pred cccC
Confidence 9876
No 16
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=99.83 E-value=1.1e-20 Score=161.67 Aligned_cols=80 Identities=44% Similarity=0.794 Sum_probs=73.6
Q ss_pred CceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhcccccC
Q 006883 156 NDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNR 235 (627)
Q Consensus 156 ~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W~~r 235 (627)
+.+|+|+|+++|+..|.|+||.|||+++. .|.|+++|||||..|+.++. +|++.++|+++|+++|++||+++|.+|
T Consensus 2 ~~~y~~~L~~~d~~~n~~kfY~iql~~~~---~~~v~~~wGRiG~~gq~~~~-~f~s~~eA~~~f~~~~~~K~~~gy~~~ 77 (81)
T PF05406_consen 2 GIIYNVYLERTDPEKNSNKFYRIQLLPDL---EWVVFRRWGRIGSKGQTRIK-PFDSEEEAIKEFEKLFKEKTGKGYEER 77 (81)
T ss_dssp TEECEEEEEEEETTTTEEEEEEEEEEEET---TEEEEEEEEETTSSEEEEEE-EESSHHHHHHHHHHHHHHHHSSTSCCC
T ss_pred CcEEEEEEEEEecCCCcEEEEEEEEEeCC---CeEEEEEECCCCCcCcEEEE-eCCCHHHHHHHHHHHHHHHHcCCCccc
Confidence 57999999999999999999999998875 49999999999999999876 689999999999999999999999999
Q ss_pred CCCc
Q 006883 236 RQFT 239 (627)
Q Consensus 236 ~~F~ 239 (627)
++|.
T Consensus 78 ~~f~ 81 (81)
T PF05406_consen 78 DNFA 81 (81)
T ss_dssp GG--
T ss_pred ccCC
Confidence 9983
No 17
>cd07994 WGR WGR domain. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs) as well as the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, a small family of bacterial DNA ligases, and various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain occurs in single-domain proteins and in a variety of domain architectures, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=99.77 E-value=1.2e-18 Score=146.36 Aligned_cols=70 Identities=31% Similarity=0.525 Sum_probs=65.2
Q ss_pred EEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeecccc-CCCceeecCCCCHHHHHHHHHHHHHHHhhcccc
Q 006883 161 AMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGM-KGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWS 233 (627)
Q Consensus 161 ~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~-~G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W~ 233 (627)
++|+.+|. |+||||+|||++++.++.|+||++|||||+ .||+++. +|.|+++|+.+|+++|.+||++++.
T Consensus 2 ~~l~~~d~--~~nKFy~iql~~~~~~~~~~v~~~WGRiGt~~Gq~~~~-~~~s~~~A~~~f~kl~~~Kt~kGY~ 72 (73)
T cd07994 2 ATLGFQDI--GSNKYYKLQLLEDDKENRYWVFRSYGRVGTVIGSTKLE-QMPSKEEAEEHFMKLYEEKTGKGYY 72 (73)
T ss_pred eEEEEEEC--CCceEEEEEEEeccCCCcEEEEEEECCccCcCCceeeE-cCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 68999998 999999999999888889999999999999 8999987 4899999999999999999999874
No 18
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=99.57 E-value=7.9e-15 Score=123.18 Aligned_cols=72 Identities=29% Similarity=0.524 Sum_probs=65.9
Q ss_pred EEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhccccc
Q 006883 161 AMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSN 234 (627)
Q Consensus 161 ~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W~~ 234 (627)
+.|.++|...|+|+||.|||++ +.++.|+|+++|||||..||++.. .|.|.++|+++|+++|++||++++..
T Consensus 2 ~~l~~~d~~~n~~kfy~i~l~~-~lfg~~~v~~~wGRiG~~Gq~~~~-~~~s~~~A~~~~~k~~~~K~~~GY~~ 73 (74)
T cd07996 2 TRLERIDPERNSARFYEIELEG-DLFGEWSLVRRWGRIGTKGQSRTK-TFDSEEEALKAAEKLIREKLKRGYRE 73 (74)
T ss_pred eEEEEECcccCCCcEEEEEEcc-cCCCCEEEEEEECCCCCCCceEEE-ECCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 4699999999999999999987 578899999999999999999976 58999999999999999999998753
No 19
>COG3831 Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.4e-09 Score=92.87 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=65.2
Q ss_pred EEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhcccccCCCC
Q 006883 159 YDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQF 238 (627)
Q Consensus 159 Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W~~r~~F 238 (627)
|.+.|..+|...|+++||.+-+... .|-++|||||+.||++++. |++.++|..+|.++-.+|...++.+..++
T Consensus 1 ~~~~l~~~D~~~n~~kFy~~~i~g~------~L~~~wGRiG~~Gq~~~k~-F~~~~~a~~~~~kLi~~KrkkGY~d~~~~ 73 (85)
T COG3831 1 YRLYLERIDEKRNMAKFYAVEIEGA------ELTRNWGRIGTKGQSQIKS-FDDSADAEKAALKLIREKRKKGYVEAVAA 73 (85)
T ss_pred CeeEEEEecccccccceEEEEEecc------eeEEeecccccCcceeeee-CCCHHHHHHHHHHHHHHHHhccccccccc
Confidence 4567999999999999999998622 5889999999999999886 99999999999999999999999887654
Q ss_pred c
Q 006883 239 T 239 (627)
Q Consensus 239 ~ 239 (627)
.
T Consensus 74 ~ 74 (85)
T COG3831 74 N 74 (85)
T ss_pred c
Confidence 3
No 20
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=98.69 E-value=2.3e-08 Score=72.36 Aligned_cols=34 Identities=50% Similarity=0.775 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAV 36 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~ 36 (627)
++|+|.|||++|++|||+++|.|++|++||++++
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 5799999999999999999999999999999875
No 21
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=98.41 E-value=3.2e-07 Score=66.37 Aligned_cols=34 Identities=59% Similarity=0.809 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAV 36 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~ 36 (627)
++|+|.+||++|+.+||+++|.|++|++||.+.+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 5899999999999999999999999999998753
No 22
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=98.22 E-value=4.7e-06 Score=70.69 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=53.8
Q ss_pred CCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecC-CCCHHHHHHHHHHHHHHHhhccccc
Q 006883 170 DNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGP-YNLQDTAINEFEQKFFAKTKNHWSN 234 (627)
Q Consensus 170 ~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~-f~s~e~Ai~~F~kkF~eKTgn~W~~ 234 (627)
.+.+|||.+-+-+. +.+.|.|-.||||+|+.||....+. |.+.+.|.++|.++-.+||+.++..
T Consensus 10 g~S~Kfyev~~~~~-~d~g~~v~~~yGR~Gt~gq~~tkt~~~~~~~~A~k~~~Klv~eK~~KGY~~ 74 (77)
T cd07998 10 GNSDKVYEVDLFEV-SDDGYVVNFRYGRRGSALREGTKTVAPVTLEAAEKIFDKLVKSKTNKGYRE 74 (77)
T ss_pred CCCceEEEEEEEec-cCCceEEEEEEccccCCcccccccCCCCCHHHHHHHHHHHHHHHhcCCcee
Confidence 36789999998875 4568899999999999999866532 4689999999999999999987754
No 23
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=9.8e-07 Score=87.55 Aligned_cols=39 Identities=54% Similarity=0.694 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK 41 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~ 41 (627)
.||||.+||+||+.|||++.|+|++|+.||++|++.-+.
T Consensus 7 kklkVa~LkeeLa~rGL~~~GNK~EL~~RLtaa~e~iaD 45 (260)
T KOG4259|consen 7 KKLKVAELKEELAERGLSTAGNKAELVSRLTAATESIAD 45 (260)
T ss_pred hhccHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999987444
No 24
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.67 E-value=2.2e-05 Score=86.62 Aligned_cols=40 Identities=43% Similarity=0.669 Sum_probs=37.2
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccc
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKK 42 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~ 42 (627)
+.|+|.+||+||++|+|||.|+|++||+||+.||.+|...
T Consensus 31 seLRViDLraEL~KRnldt~GnKsVLmERLkKal~~EG~d 70 (940)
T KOG4661|consen 31 SELRVIDLRAELEKRNLDTVGNKSVLMERLKKALRAEGLD 70 (940)
T ss_pred hheeeeehhhHHhhhcccccCcHHHHHHHHHHHHHhcCCC
Confidence 4699999999999999999999999999999999988653
No 25
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=95.80 E-value=0.012 Score=42.58 Aligned_cols=33 Identities=42% Similarity=0.685 Sum_probs=29.6
Q ss_pred hccccHHHHHHHHHhhccCCCCchHHHHHHHhh
Q 006883 70 FGQMGVKQLREQADLRGLSKAGTKKELLERLCN 102 (627)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (627)
+..|++.+|++.+.+++++..|+|.++++||.+
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~ 33 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLKE 33 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999964
No 26
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=95.11 E-value=0.02 Score=41.62 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHHcCCCC--CCCHHHHHHHHH
Q 006883 2 ASNLKVDQLRAKLAQRGLST--AGTKAILVQRLE 33 (627)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~--~g~k~~l~~rl~ 33 (627)
|++|||.+||+.|..+|++- ..-|++||+=++
T Consensus 1 p~sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~~ 34 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEHGIEFPSNAKKAELVALFN 34 (35)
T ss_dssp STT--SHHHHHHHHHHT---SSS--SHHHHHH--
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCCCHHHHHHHHc
Confidence 78999999999999999864 455999998654
No 27
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=94.94 E-value=0.0094 Score=69.00 Aligned_cols=42 Identities=33% Similarity=0.402 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcccc
Q 006883 2 ASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKS 43 (627)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~ 43 (627)
|.-|||++||-||.-|||.++|+|..|++||+-++..+.+++
T Consensus 646 pK~mKv~~lR~elegral~~KG~Ks~l~~rl~~~l~te~~~E 687 (1194)
T KOG4246|consen 646 PKIMKVVVLRPELEGRALGMKGEKSDLPERLAIPLTTEPKEE 687 (1194)
T ss_pred chhhhhhhhhhhhcccccccccchhhHHHHhhcccccchhhh
Confidence 677999999999999999999999999999999997665544
No 28
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=94.01 E-value=0.077 Score=38.25 Aligned_cols=33 Identities=39% Similarity=0.707 Sum_probs=30.3
Q ss_pred hccccHHHHHHHHHhhccCCCCchHHHHHHHhh
Q 006883 70 FGQMGVKQLREQADLRGLSKAGTKKELLERLCN 102 (627)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (627)
+.+|++.+|++.+..++++.+|+|.++++|+..
T Consensus 1 ~~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~ 33 (35)
T smart00513 1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLE 33 (35)
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 357999999999999999999999999999964
No 29
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=76.73 E-value=1.2 Score=39.83 Aligned_cols=40 Identities=33% Similarity=0.656 Sum_probs=31.0
Q ss_pred EeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeecccc
Q 006883 475 LWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMF 516 (627)
Q Consensus 475 LwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~ 516 (627)
|+|=|+..++-+|+++|--......|.. +||.|+||++.+
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~--~~~~g~y~t~~a 40 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKD--RFGQGQYFTDIA 40 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccc--cCCCceEEEecC
Confidence 5788999999999999865533334444 699999999865
No 30
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=72.07 E-value=2.9 Score=40.41 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=37.7
Q ss_pred eEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCCCCCeeEEEEEEEeec
Q 006883 473 MLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALG 542 (627)
Q Consensus 473 ~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~~~~~~mlLCeVALG 542 (627)
|.|||||... + .+.++. ......=||+|-|.++....|..++........+++..-++-.-
T Consensus 1 M~LYHGS~~~-i-----~~pd~~---~~r~~~DFG~GFY~T~~~~qA~~wA~~~~~~~~~~v~~Y~~~~~ 61 (154)
T PF13151_consen 1 MILYHGSNQI-I-----EKPDLS---KGRPNLDFGKGFYLTTDKEQAKRWAKRKRNGGDPIVNVYEFDED 61 (154)
T ss_pred CEeecCCCcc-c-----cCceec---cCcccCccCceeEcccCHHHHHHHHHhcccCCCCEEEEEEEecc
Confidence 5799999632 1 122222 12233459999999999988888887652334555555555433
No 31
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=70.11 E-value=1.2 Score=54.85 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHhcccCCCCCC--------ccccccceEEEeechHhHHHH--HH-hc----cCCCceEEeecCCCcC
Q 006883 419 EVDSLEFSLIANYLLNTHAKTHSA--------YSVDIVQIFRVEREGETERFR--KQ-FS----NSKNRMLLWHGSRLTN 483 (627)
Q Consensus 419 ~~~s~Eyk~I~~y~~~t~~~~h~~--------~~~~I~~IfrV~r~~e~~rF~--~~-~~----~~~N~~LLwHGSr~~N 483 (627)
-++..++....++...|. .+|.. +...+..+|.+.....++++. .+ +. -.-++..+||++...+
T Consensus 965 l~~~~~~~~~a~~~~~t~-~~h~~~~~~~~~f~~~~~~r~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~f~~~~~~~ 1043 (1143)
T KOG4177|consen 965 LCSITGGVAPAQWEDITG-TTHLTFANDCGSFTTNVSARFWLVDCRKTREAVTHATQLYNELIFVYMAKFVVFAKSNFPN 1043 (1143)
T ss_pred hhcccCCcCcchhhcccc-eeecccccccceeehhhhhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 344445555556555543 34421 233455667776666555433 11 11 1457899999998877
Q ss_pred HHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCCC-------------CCeeEEEEEEEeecceeeeccc
Q 006883 484 WTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPS-------------ATAGVLLLCEVALGDMSELLYA 550 (627)
Q Consensus 484 ~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~-------------~~~~~mlLCeVALGk~~e~~~~ 550 (627)
-|-..||..+ .++ .+.|||.|+||+.+++++..|...... -.-..+++|.|.+|+..--...
T Consensus 1044 --~~~~~~~~~~--~~~-~~~~~~~~~~f~~~~~~~d~~v~~~~~~~~~~~~n~~p~~~~~~ql~~~~~~~~~~~l~~~~ 1118 (1143)
T KOG4177|consen 1044 --EGRLRCFCMT--DDK-VDKTLEQQEYFAEVARSRDIEVLGGKGGFAEPSGNDVPLTKAGQQLSFCFVPFLENRLAFSV 1118 (1143)
T ss_pred --hhcccccccc--CCc-cCcchhhHHHHHHhhhhhhhhhhccccceecccCccccceeccceeEEeeehhhhhhhHHHH
Confidence 5667788874 233 456899999999999999998864321 1336899999999987433222
Q ss_pred cCCCCCCCCCCccccc
Q 006883 551 NYDADKLPDGKLSTKG 566 (627)
Q Consensus 551 ~~~~~~~p~G~~Sv~g 566 (627)
.- + ++|.+|+.+
T Consensus 1119 ~~---~-~~g~~~~~~ 1130 (1143)
T KOG4177|consen 1119 KK---R-HAGRISFMA 1130 (1143)
T ss_pred Hh---h-cCCcceeec
Confidence 21 2 448888876
No 32
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=64.50 E-value=8.4 Score=29.11 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=25.7
Q ss_pred hhccccHHHHHHHHHhhccC--CCCchHHHHHHHhh
Q 006883 69 SFGQMGVKQLREQADLRGLS--KAGTKKELLERLCN 102 (627)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 102 (627)
||..|++.+|+++|...+|. ..=+|.+++..|..
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~ 36 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILK 36 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHH
Confidence 68899999999999999995 44478888888843
No 33
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=60.49 E-value=4.4 Score=40.16 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.2
Q ss_pred eEEeecCCCcCHHHHhhhCCCC
Q 006883 473 MLLWHGSRLTNWTGILSQGLRI 494 (627)
Q Consensus 473 ~LLwHGSr~~N~~gILs~GLri 494 (627)
..|||||...+|-+|+.+||+.
T Consensus 95 ~~lyHGT~~~~~~~I~~~GL~p 116 (179)
T PRK00819 95 AVLYHGTSSEELDSILEEGLKP 116 (179)
T ss_pred ceeEeCCCHHHHHHHHHhCCCc
Confidence 4899999999999999999864
No 34
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=58.74 E-value=7.3 Score=39.73 Aligned_cols=39 Identities=38% Similarity=0.630 Sum_probs=34.3
Q ss_pred hhhhccccHHHHHHHHHhhccCCCCchHHHHHHHhhccc
Q 006883 67 IESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAE 105 (627)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (627)
..|...|.|-.|++.+..||++.+|+|.|+..||.+..+
T Consensus 3 ~sD~kklkVa~LkeeLa~rGL~~~GNK~EL~~RLtaa~e 41 (260)
T KOG4259|consen 3 MSDYKKLKVAELKEELAERGLSTAGNKAELVSRLTAATE 41 (260)
T ss_pred chhhhhccHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 357789999999999999999999999999999975433
No 35
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=51.66 E-value=26 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=25.9
Q ss_pred CCcHHHHHHHHHHcCCCC-CCC-HHHHHHHHHHHH
Q 006883 4 NLKVDQLRAKLAQRGLST-AGT-KAILVQRLEEAV 36 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~-~g~-k~~l~~rl~~~~ 36 (627)
+|++.|||+--+..|+.. .++ |.+||..+.++.
T Consensus 4 ~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~q 38 (43)
T PF07498_consen 4 SMTLSELREIAKELGIEGYSKMRKQELIFAILKAQ 38 (43)
T ss_dssp CS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHH
Confidence 689999999999999954 443 999999987775
No 36
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.07 E-value=20 Score=39.91 Aligned_cols=34 Identities=41% Similarity=0.505 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 006883 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVE 37 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~ 37 (627)
-|+-.+||.-|+.-||+|.|-|..|+.|-++.+-
T Consensus 268 ~l~~~~lr~kL~~lglpt~G~r~~l~~Rh~e~~~ 301 (397)
T TIGR00599 268 LLTDSQIRKKLSELGLSTNGTRQLLQKRHNEWET 301 (397)
T ss_pred hcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3788999999999999999999999999998873
No 37
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=50.82 E-value=9.1 Score=35.50 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=35.9
Q ss_pred eecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCC
Q 006883 476 WHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYAS 526 (627)
Q Consensus 476 wHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~ 526 (627)
+|||...-..+|.. |++-.|....-.-----+|.|-|+...-+++|+...
T Consensus 3 YHGT~~~~~~sI~~-gI~~~~~g~~~~~d~~W~GfY~a~~~~~A~GYa~d~ 52 (147)
T cd01436 3 YHGTKPGYVDSIQK-GIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDN 52 (147)
T ss_pred ccccchHHHHHHHh-hccCCCCCCCcchhhhhcceeecCCHhhhcceeecc
Confidence 79999999999988 776544321111112346999999999999999754
No 38
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=45.15 E-value=44 Score=39.10 Aligned_cols=37 Identities=30% Similarity=0.511 Sum_probs=32.7
Q ss_pred hhhhccccHHHHHHHHHhhccCCCCchHHHHHHHhhc
Q 006883 67 IESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNH 103 (627)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (627)
-..|..+||.+|++.+.++|++..|+|.++++|+.+.
T Consensus 546 ~~~l~kltv~~Lk~~l~~~g~~~~~kKadLi~~i~~~ 582 (584)
T TIGR00578 546 KGTLGKLTVSVLKDFCRAYGLRSGSKKQELLDALTKH 582 (584)
T ss_pred cCChhhccHHHHHHHHHHcCCCccccHHHHHHHHHHH
Confidence 3467789999999999999999999999999998653
No 39
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=44.77 E-value=12 Score=37.13 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=22.0
Q ss_pred ceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccc
Q 006883 472 RMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADM 515 (627)
Q Consensus 472 ~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~ 515 (627)
-..|+|||...+|-.|+.+||+- |-..-|.||..
T Consensus 105 p~~lyHGT~~~~~~~I~~~GL~~----------m~R~hVHls~~ 138 (186)
T PF01885_consen 105 PPILYHGTYRKAWPSILEEGLKP----------MGRNHVHLSTG 138 (186)
T ss_dssp -SEEEE--BGGGHHHHHHH-B-------------SSSSEEEES-
T ss_pred CCEEEEccchhhHHHHHHhCCCC----------CCCCEEEEeec
Confidence 46899999999999999999753 33446788864
No 40
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=44.51 E-value=23 Score=40.96 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006883 2 ASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (627)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (627)
+..++|.+||++|++|-|.+.+ |-+|.+||-+++-++
T Consensus 13 ~~p~~v~~~~~~~~~rk~~e~e-k~e~e~~~~a~~~~e 49 (718)
T KOG2416|consen 13 IDPWKVTELKEELKRRKLTERE-KEELERRLDAALRAE 49 (718)
T ss_pred CcchhHHHHHHHHHHhhhcccc-chhHHHHHHHhhhhh
Confidence 5689999999999999999999 999999999998665
No 41
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=40.67 E-value=10 Score=44.64 Aligned_cols=38 Identities=39% Similarity=0.595 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc
Q 006883 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK 41 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~ 41 (627)
.+++.+|+++..+||+.++|.|+++++|+..+.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (643)
T PLN03124 81 GMTVRELREAASERGLATTGRKKDLLERLCAALESDVK 118 (643)
T ss_pred ccccchhhHHHHHHhhhccccccchhhhcccccccccc
Confidence 57899999999999999999999999999887766554
No 42
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=39.83 E-value=42 Score=27.53 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 006883 6 KVDQLRAKLAQRGLSTAGTKAILVQRLEE 34 (627)
Q Consensus 6 ~v~~l~~el~~r~l~~~g~k~~l~~rl~~ 34 (627)
=...|+++|..|||...|.=.+=.+||=.
T Consensus 16 GldrLK~~L~a~GLKcGGTl~ERA~RLfs 44 (60)
T PF13297_consen 16 GLDRLKSALMALGLKCGGTLQERAARLFS 44 (60)
T ss_pred CHHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence 35789999999999999998877778743
No 43
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=38.34 E-value=57 Score=25.07 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHcCCCCC----CCHHHHHHHHHHHHHH
Q 006883 4 NLKVDQLRAKLAQRGLSTA----GTKAILVQRLEEAVEE 38 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~----g~k~~l~~rl~~~~~~ 38 (627)
.|.=.|||++|.+-|++.. -.+..+..||.+++..
T Consensus 5 ~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~~~~ 43 (44)
T smart00540 5 RLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRKLRRG 43 (44)
T ss_pred HcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHHHHcC
Confidence 4666899999999999863 3488899999988753
No 44
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=36.39 E-value=30 Score=33.55 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.6
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCC
Q 006883 2 ASNLKVDQLRAKLAQRGLSTAGT 24 (627)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~ 24 (627)
..||+|.+||+-|..||++-.|-
T Consensus 104 l~KlrVk~LK~iL~~~g~~C~GC 126 (154)
T PF10208_consen 104 LKKLRVKQLKKILDDWGEDCKGC 126 (154)
T ss_dssp TTTTCHHHHHHHHHHHTTT-SS-
T ss_pred HhhCcHHHHHHHHHHcCCCCCCc
Confidence 36999999999999999999985
No 45
>PF14164 YqzH: YqzH-like protein
Probab=34.48 E-value=44 Score=27.75 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcHHHHHHH
Q 006883 293 ISMMKQLMMEIGYNANKLPLGKLSKSTILKG 323 (627)
Q Consensus 293 ~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g 323 (627)
.+|+.+.|.++|+|..-+||..-..+++.+.
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~ 37 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKH 37 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHH
Confidence 5788899999999999999988777766543
No 46
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=29.82 E-value=86 Score=25.23 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHH
Q 006883 3 SNLKVDQLRAKLAQRGLST--AGTKAILVQRLEEAV 36 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~--~g~k~~l~~rl~~~~ 36 (627)
|+|...|..+||.++|++. +-.|++|+.--...+
T Consensus 14 SRl~k~eMiaem~~~G~~y~~~~tK~~Lvk~fkKql 49 (54)
T PF09124_consen 14 SRLTKPEMIAEMDSYGFEYNEKDTKAQLVKIFKKQL 49 (54)
T ss_dssp HTS-HHHHHHHHHHTT----TTS-HHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhCCcCCccccHHHHHHHHHHHH
Confidence 5899999999999999974 456999987666555
No 47
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=29.47 E-value=43 Score=25.96 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=13.2
Q ss_pred CcHHHHHHHHHHcCCC
Q 006883 5 LKVDQLRAKLAQRGLS 20 (627)
Q Consensus 5 ~~v~~l~~el~~r~l~ 20 (627)
+||.+||++|..+|++
T Consensus 11 lk~~elrd~LEe~g~~ 26 (46)
T PF08312_consen 11 LKCLELRDELEEQGYS 26 (46)
T ss_dssp HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhCCCC
Confidence 6899999999999983
No 48
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=28.96 E-value=33 Score=34.95 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=22.1
Q ss_pred CCceEEeecCCCcCHHHHhhhCCCCC
Q 006883 470 KNRMLLWHGSRLTNWTGILSQGLRIA 495 (627)
Q Consensus 470 ~N~~LLwHGSr~~N~~gILs~GLria 495 (627)
..-..|+|||...++-+|+.+||...
T Consensus 118 ~~p~~LyhGTs~~~l~~I~~~Gi~Pm 143 (211)
T COG1859 118 EPPAVLYHGTSPEFLPSILEEGLKPM 143 (211)
T ss_pred CCCcEEEecCChhhhHHHHHhcCccc
Confidence 34568999999999999999998643
No 49
>PTZ00315 2'-phosphotransferase; Provisional
Probab=26.60 E-value=29 Score=40.40 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.9
Q ss_pred eEEeecCCCcCHHHHhhhC-CCC
Q 006883 473 MLLWHGSRLTNWTGILSQG-LRI 494 (627)
Q Consensus 473 ~LLwHGSr~~N~~gILs~G-Lri 494 (627)
..|||||...+|-+|+++| |+-
T Consensus 477 ~~lyHGT~~~~~~sI~~~G~L~~ 499 (582)
T PTZ00315 477 PVAVHGTYWSAWKAIQRCGYLST 499 (582)
T ss_pred CeEEeCCcHHHHHHHHHcCCccc
Confidence 4799999999999999999 864
No 50
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.56 E-value=88 Score=31.00 Aligned_cols=36 Identities=33% Similarity=0.489 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHcCCC---------------CCCCHHHHHHHHHHHHHHh
Q 006883 3 SNLKVDQLRAKLAQRGLS---------------TAGTKAILVQRLEEAVEEE 39 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~---------------~~g~k~~l~~rl~~~~~~~ 39 (627)
.|++..|||++|..-|++ ..| .++|.+||++|++..
T Consensus 17 ~kV~MAdLka~~~dlGf~~v~T~iaSGNlvf~s~~~-~~el~~klE~afe~~ 67 (178)
T COG3797 17 RKVVMADLKAALTDLGFANVRTYIASGNLVFESEAG-AAELEAKLEAAFEKR 67 (178)
T ss_pred ceEeHHHHHHHHHHcCcchhhHhhhcCCEEEEcCCC-hHHHHHHHHHHHHHH
Confidence 367789999999999986 345 899999999999654
No 51
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=22.84 E-value=2.2e+02 Score=29.94 Aligned_cols=81 Identities=26% Similarity=0.356 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccccCCCcccCCCCCCCCCCCCccccchhhhccccHHHHHHHHH
Q 006883 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNGSQKVKSIESFGQMGVKQLREQAD 83 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (627)
.|....|++-++--||.+-|...-|..||...+..=... +..|.-+-+.+|+..+|+.+|.
T Consensus 170 ~Lsr~~L~~L~r~~~l~~~~~~~~lr~rL~~~~~~l~~d-------------------D~~i~~eGv~~Ls~~EL~~Ac~ 230 (268)
T PF07766_consen 170 NLSRPHLRALCRLLGLTPFGPSSLLRRRLRKRLRYLKQD-------------------DRLIKREGVDSLSEEELQDACY 230 (268)
T ss_dssp HS-HHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHH-------------------HHHHHHH-GGGS-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHhccCcCCchHHHHHHHHHHHHHHHHH-------------------HHHHHHhccccCCHHHHHHHHH
Confidence 456678899999999999999999999998887544331 1234444567899999999999
Q ss_pred hhccCCCCch-HHHHHHHhhc
Q 006883 84 LRGLSKAGTK-KELLERLCNH 103 (627)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~~ 103 (627)
.||+.+.|.. .+..+.+..|
T Consensus 231 ~RGl~~~~~s~~~lr~~L~~W 251 (268)
T PF07766_consen 231 ERGLRSTGLSEEELREWLKQW 251 (268)
T ss_dssp HTT---TT--HHHHHHHHHHH
T ss_pred HhCCCcCCCCHHHHHHHHHHH
Confidence 9999877744 4444555443
No 52
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.29 E-value=1.7e+02 Score=21.33 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHcCCCCCC---CHHHHHHHHHHH
Q 006883 5 LKVDQLRAKLAQRGLSTAG---TKAILVQRLEEA 35 (627)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g---~k~~l~~rl~~~ 35 (627)
+.-.+||+-|.+.|+.... .+.+|++.+++.
T Consensus 4 Ws~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVPKSAKTRDELLKLAKKN 37 (38)
T ss_pred CCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence 4457999999999998873 688888877653
No 53
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=21.03 E-value=1.7e+02 Score=30.99 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCCcHHHHHHHHHHHHHH
Q 006883 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNAN--KLPLGKLSKSTILKGYDVLKRI 330 (627)
Q Consensus 279 L~~~Vq~li~lI~---n~~~~~~~m~e~~~D~~--kmPLGkLSk~qI~~g~~vL~eI 330 (627)
|...+..++..++ +...+|.+|..+|++.. ++||..|+.++..+-.++|.++
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 289 (294)
T TIGR02313 233 LHFELLEANDAIFKDTNPAPLKAALGMMGLIEKELRPPLGLPSDALEEEIRDMAEKY 289 (294)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 4556666666443 45568999998898654 8999999999988887888765
No 54
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=20.17 E-value=1.3e+02 Score=32.92 Aligned_cols=32 Identities=41% Similarity=0.619 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 006883 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAV 36 (627)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~ 36 (627)
|.-.++|..|...||+|.|.|..|+.|-++..
T Consensus 251 ls~s~ik~KLse~GLst~G~kQ~likRh~~~v 282 (442)
T KOG0287|consen 251 LSDSDIKKKLSEHGLSTQGNKQQLIKRHQEFV 282 (442)
T ss_pred ccHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 44568999999999999999999999998775
Done!