Query 006883
Match_columns 627
No_of_seqs 364 out of 1065
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 11:28:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqy_C Poly [ADP-ribose] polym 100.0 3E-132 9E-137 1098.3 41.1 489 123-627 3-494 (506)
2 3kjd_A Poly [ADP-ribose] polym 100.0 4E-97 1E-101 788.6 29.0 345 276-626 20-368 (368)
3 1efy_A Poly (ADP-ribose) polym 100.0 4.4E-93 1.5E-97 757.2 32.9 347 276-627 1-349 (350)
4 3c4h_A Poly(ADP-ribose) polyme 100.0 3.1E-87 1.1E-91 714.3 27.2 339 275-623 6-357 (357)
5 2x5y_A Zinc finger CCCH-type a 100.0 4.1E-39 1.4E-43 311.3 12.5 167 410-624 2-172 (173)
6 3u9h_A Tankyrase-2; protein-li 100.0 8.3E-38 2.9E-42 316.6 15.7 180 411-624 29-235 (240)
7 2pqf_A Poly [ADP-ribose] polym 100.0 3.9E-37 1.3E-41 303.5 16.8 170 410-624 9-193 (198)
8 2eoc_A Poly [ADP-ribose] polym 100.0 3.6E-36 1.2E-40 275.7 13.4 121 126-252 4-124 (124)
9 3blj_A Poly(ADP-ribose) polyme 100.0 1.6E-35 5.6E-40 296.7 16.0 171 409-623 33-220 (221)
10 3hkv_A PARP-10, poly [ADP-ribo 100.0 3.3E-35 1.1E-39 293.2 15.0 174 412-625 10-200 (217)
11 3smj_A Poly [ADP-ribose] polym 100.0 7.3E-35 2.5E-39 286.3 15.8 168 412-623 8-192 (193)
12 4f0d_A PARP-16, poly [ADP-ribo 99.8 8.2E-21 2.8E-25 194.6 12.2 119 413-543 93-219 (277)
13 1jjr_A KU70, thyroid autoantig 99.1 1.9E-11 6.4E-16 114.6 2.6 89 3-105 62-150 (151)
14 1zrj_A E1B-55KDA-associated pr 99.1 4.3E-11 1.5E-15 92.0 3.6 39 2-40 10-48 (50)
15 1h1j_S THO1 protein; SAP domai 99.0 2.1E-10 7.2E-15 88.6 5.0 39 3-41 6-44 (51)
16 2do1_A Nuclear protein HCC-1; 99.0 5.7E-10 1.9E-14 87.4 5.9 40 2-41 10-49 (55)
17 2kvu_A MKL/myocardin-like prot 98.9 7.6E-10 2.6E-14 91.5 5.8 39 3-41 27-65 (75)
18 2rnn_A E3 SUMO-protein ligase 98.0 5.3E-06 1.8E-10 73.9 5.4 38 3-40 38-75 (114)
19 2ra8_A Uncharacterized protein 97.9 1.3E-05 4.4E-10 85.3 6.7 62 168-236 8-69 (362)
20 1zrj_A E1B-55KDA-associated pr 96.1 0.0063 2.2E-07 46.6 4.6 41 66-106 6-46 (50)
21 1h1j_S THO1 protein; SAP domai 96.0 0.0044 1.5E-07 47.7 3.5 38 68-105 3-40 (51)
22 2do1_A Nuclear protein HCC-1; 95.3 0.014 4.8E-07 45.6 3.8 36 67-102 7-42 (55)
23 2kvu_A MKL/myocardin-like prot 95.2 0.014 4.7E-07 48.3 3.8 38 66-103 22-59 (75)
24 2rnn_A E3 SUMO-protein ligase 89.5 0.28 9.5E-06 43.7 4.0 37 66-102 33-69 (114)
25 1zbh_A 3'-5' exonuclease ERI1; 88.4 0.46 1.6E-05 48.8 5.4 36 4-39 28-63 (299)
26 1jjr_A KU70, thyroid autoantig 87.7 0.39 1.3E-05 44.9 3.9 42 65-106 56-97 (151)
27 2rno_A Putative DNA-binding pr 84.6 1.4 4.8E-05 38.1 5.5 39 5-43 20-58 (110)
28 2do5_A Splicing factor 3B subu 70.7 6.2 0.00021 29.9 4.6 35 5-39 11-45 (58)
29 1v66_A Protein inhibitor of ac 67.5 5.1 0.00017 32.0 3.8 35 4-38 13-47 (65)
30 1wfx_A Probable RNA 2'-phospho 59.3 3.9 0.00013 39.4 2.1 22 473-494 92-113 (186)
31 1zbu_A ERI-1 homolog, 3'-5' ex 57.3 2.2 7.5E-05 44.9 0.0 37 3-39 77-113 (349)
32 3skq_A Mitochondrial distribut 57.2 11 0.00038 37.8 5.0 41 3-43 145-186 (249)
33 1kcf_A Hypothetical 30.2 KD pr 55.2 8.9 0.00031 38.7 4.1 33 3-35 2-34 (258)
34 1jey_A KU70; double-strand DNA 52.8 3.1 0.00011 46.9 0.3 40 64-103 567-606 (609)
35 1y02_A CARP2, FYVE-ring finger 38.3 26 0.0009 31.2 3.9 28 4-31 78-107 (120)
36 3skq_A Mitochondrial distribut 37.9 76 0.0026 31.7 7.6 80 4-102 97-177 (249)
37 2out_A MU-like prophage flumu 32.6 19 0.00064 32.6 2.0 19 3-21 90-108 (131)
38 2r91_A 2-keto-3-deoxy-(6-phosp 30.5 68 0.0023 32.2 6.1 56 279-334 223-284 (286)
39 1v66_A Protein inhibitor of ac 28.0 53 0.0018 26.2 3.6 29 72-100 13-41 (65)
40 1w3i_A EDA, 2-keto-3-deoxy glu 26.6 94 0.0032 31.3 6.3 54 278-331 223-282 (293)
41 2nuw_A 2-keto-3-deoxygluconate 25.6 1E+02 0.0035 31.0 6.4 54 278-331 221-280 (288)
42 2riq_A Poly [ADP-ribose] polym 24.5 81 0.0028 29.5 4.9 38 5-42 42-79 (160)
43 3b4u_A Dihydrodipicolinate syn 23.4 1.2E+02 0.0042 30.4 6.5 55 277-331 228-289 (294)
44 3l21_A DHDPS, dihydrodipicolin 23.4 74 0.0025 32.3 4.8 52 279-330 244-300 (304)
45 2wkj_A N-acetylneuraminate lya 22.6 83 0.0029 31.9 5.0 53 279-331 242-300 (303)
46 2yxg_A DHDPS, dihydrodipicolin 22.4 1E+02 0.0035 30.9 5.6 52 279-330 230-286 (289)
47 2rfg_A Dihydrodipicolinate syn 22.3 1.1E+02 0.0037 31.0 5.8 52 279-330 231-287 (297)
48 3na8_A Putative dihydrodipicol 22.2 1.1E+02 0.0038 31.2 5.9 53 278-330 255-312 (315)
49 3eb2_A Putative dihydrodipicol 22.0 79 0.0027 32.1 4.7 53 279-331 235-292 (300)
50 3dz1_A Dihydrodipicolinate syn 21.3 95 0.0033 31.6 5.2 54 278-331 243-303 (313)
51 2jx3_A Protein DEK; alpha heli 20.8 47 0.0016 30.0 2.3 36 4-39 74-109 (131)
52 1a62_A RHO; transcription term 20.1 81 0.0028 28.3 3.8 36 65-100 1-38 (130)
No 1
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=100.00 E-value=2.7e-132 Score=1098.33 Aligned_cols=489 Identities=42% Similarity=0.735 Sum_probs=430.8
Q ss_pred ccceeeeeccCccccCCCCCcccCCceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccC-
Q 006883 123 DEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMK- 201 (627)
Q Consensus 123 ~~~~~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~- 201 (627)
.+++++++.||+++|||.|+ +++.+|||++++.+|+|+|++||+++|+|+||+||||+++.++.|+|||||||||+.
T Consensus 3 ~~~~~~~~~kg~~~Vd~~~~--~~~~~~Vy~~~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~~ 80 (506)
T 4dqy_C 3 SEKRMKLTLKGGAAVDPDSG--LEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVI 80 (506)
T ss_dssp ------------CCCCGGGS--CTTTSCCCEETTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSSC
T ss_pred CCceEEEEEeCCeecCCccC--CCCceEEEEeCCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCccc
Confidence 35678899999999999986 457899999999999999999999999999999999998888899999999999995
Q ss_pred CCceeecCCCCHHHHHHHHHHHHHHHhhcccccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcH
Q 006883 202 GQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEP 281 (627)
Q Consensus 202 G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W~~r~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~ 281 (627)
||+++. +|+++++|+++|+++|++||||+|++| +|+++||||++||+||+.++++.. ... .....+|+|++
T Consensus 81 Gq~~l~-~~~s~~~Ai~~F~k~F~~KTgn~W~~R-~f~k~pgKy~~ve~d~~~~~~~~~----~~~---~~~~~~s~L~~ 151 (506)
T 4dqy_C 81 GSNKLE-QMPSKEDAIEHFMKLYEEKTGNAWHSK-NFTKYPKKFYPLEIDYGQDEEAVK----KLT---VNPGTKSKLPK 151 (506)
T ss_dssp EEEEEE-CCSCSHHHHHHHHHHHHHHHSSCSSCS-SCCCCTTCCEEECBC------------------------CCCSCH
T ss_pred ccceec-cCCCHHHHHHHHHHHHHHHhcCCcccc-CccccCCccceeecccccchhhhh----hhc---ccCCCCCCCCH
Confidence 888875 689999999999999999999999999 999999999999999976433221 010 11234799999
Q ss_pred HHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCC-ChhHHHHhhhhccccccCCCCCC
Q 006883 282 CVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPP-DRRKLEELSGEFYTVIPHDFGFK 360 (627)
Q Consensus 282 ~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~-~~~~l~~lsn~fYtlIPh~fg~~ 360 (627)
+||+||++|||+++|+++|.+|++|+.+||||+||++||.+||+||++|+++|++. ..+.+.+|||+|||+|||+||++
T Consensus 152 ~Vq~Li~lIfd~~~~~~~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIPh~fg~~ 231 (506)
T 4dqy_C 152 PVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMK 231 (506)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCBCCTTS
T ss_pred HHHHHHHHHhHHHHHHHHHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhEeCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999775 45789999999999999999987
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhccc-ccCCCchHHhhcccceeEEcCCCCHHHHHHHHHHhcccCCC
Q 006883 361 KMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTE-IQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKT 439 (627)
Q Consensus 361 ~~~~~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~-~~~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~ 439 (627)
+||+|++.++|+++++||++|.|||+|++|++.+.. ...||+|++|++|+|+|++|+++|+||++|++||++|++++
T Consensus 232 --~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~~ 309 (506)
T 4dqy_C 232 --KPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATT 309 (506)
T ss_dssp --CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCSS
T ss_pred --CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCcc
Confidence 579999999999999999999999999999976532 45899999999999999999999999999999999999999
Q ss_pred CCCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccc
Q 006883 440 HSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKS 519 (627)
Q Consensus 440 h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKS 519 (627)
|..++++|.+||||+|++++++|. .+++.+|+++|||||+.+||++||++||+++|++++.+|+|||+|||||+++|||
T Consensus 310 h~~~~~~I~~I~rI~~~~e~~~f~-~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS 388 (506)
T 4dqy_C 310 HNAYDLEVIDIFKIEREGECQRYK-PFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKS 388 (506)
T ss_dssp CTTCCCCEEEEEEEEETTTTTTTH-HHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHH
T ss_pred cccCCceeEeEEEEccHHHHhhHH-HhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhcc
Confidence 988899999999999999999999 6778999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCc
Q 006883 520 ANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKG 599 (627)
Q Consensus 520 a~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~ 599 (627)
++||+++..++.++||||+||||++++++.+++ ...||+|||||+|+|++.|+|++. ++.|||.||+|+|++++..++
T Consensus 389 ~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~-~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~~~~~ 466 (506)
T 4dqy_C 389 ANYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSGVNDT 466 (506)
T ss_dssp HTTSCCCSSSCEEEEEEEEEECCSEEEESSCCC-CSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECSCCCC
T ss_pred ccccCCCCCCCeEEEEEEEEecCCceecccchh-hhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCCCCCC
Confidence 999998877789999999999999999998885 689999999999999999999988 788999999999999888888
Q ss_pred cCcCceEEEeecCceeeeeEEEEEEEeC
Q 006883 600 HLLYNEYIVYSVDQIRMRYVVQVNFKYK 627 (627)
Q Consensus 600 ~l~ynEYIVYd~~Qir~rYLV~~~~~~~ 627 (627)
+|.||||||||++||||||||+|+|+|+
T Consensus 467 ~l~ynEyiVYd~~Qir~rYLv~v~~~~~ 494 (506)
T 4dqy_C 467 SLLYNEYIVYDIAQVNLKYLLKLKFNFK 494 (506)
T ss_dssp SCSBCEEEESSGGGEEEEEEEEEECCCC
T ss_pred cccccceEEEchHHeeEEEEEEEEEEcc
Confidence 9999999999999999999999999985
No 2
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=100.00 E-value=4e-97 Score=788.63 Aligned_cols=345 Identities=51% Similarity=0.881 Sum_probs=325.8
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh-hHHHHhhhhcccccc
Q 006883 276 NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR-RKLEELSGEFYTVIP 354 (627)
Q Consensus 276 ~skL~~~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~-~~l~~lsn~fYtlIP 354 (627)
+|+|+++||+||++|||+++|+++|++|+||++|||||+||++||.+||++|++|+++|++... +.+.+|||+|||+||
T Consensus 20 ~skL~~~vq~li~lIfd~~~~~~~m~~~~~D~~k~PLGkLSk~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIP 99 (368)
T 3kjd_A 20 FQSMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALMEACNEFYTRIP 99 (368)
T ss_dssp HCCCCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHSC
T ss_pred cccCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCccccCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhCC
Confidence 6999999999999999999999999999999999999999999999999999999999987653 689999999999999
Q ss_pred CCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCchHHhhcccceeEEcCCCCHHHHHHHHHHhc
Q 006883 355 HDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLN 434 (627)
Q Consensus 355 h~fg~~~~~~~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~ 434 (627)
|+||++ +||+|+|.++|++|++|||+|.|||+|++|++.......||+|.+|++|+|+|++|+++|+||++|++||++
T Consensus 100 h~fg~~--~pp~I~~~~~l~~k~~lle~L~dieiA~~l~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~y~~~ 177 (368)
T 3kjd_A 100 HDFGLR--TPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQS 177 (368)
T ss_dssp BCCTTS--CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC----CCSCHHHHHHHHHTEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhcCcEEEEcCCCChHHHHHHHHHHh
Confidence 999987 579999999999999999999999999999987655568999999999999999999999999999999999
Q ss_pred ccCCCCCCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeecc
Q 006883 435 THAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFAD 514 (627)
Q Consensus 435 t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd 514 (627)
|++++|..++++|.+||||+|++++++|. ++.+|+++|||||+.+||++||++||+++|++++.+|+|||+|||||+
T Consensus 178 T~~~~h~~~~~~I~~IfrI~r~~e~~~F~---k~~~N~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fGkGIYFA~ 254 (368)
T 3kjd_A 178 THAPTHSDYTMTLLDLFEVEKDGEKEAFR---EDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFAD 254 (368)
T ss_dssp TCCTTCTTCEEEEEEEEEEEETTHHHHSC---TTCSCEEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGSTTCSSEEEBS
T ss_pred cCCcccCcCceeEEEEEEecchHHHHHHh---hcCCCceEEEeCCCHHHHHHHHHcCCCcccccccccCceeeeEEEccc
Confidence 99999988899999999999999999998 578999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCcccc
Q 006883 515 MFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQ 594 (627)
Q Consensus 515 ~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~ 594 (627)
++|||++||.++..++.++||||+|+||++++++.+++++..||+|||||+|+|++.|+|++++++ |||+||+|++++.
T Consensus 255 ~~skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~pP~G~dSv~g~G~~~P~~~~~~~~-dgv~vP~G~~~~~ 333 (368)
T 3kjd_A 255 MSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL-NGSTVPLGPASDT 333 (368)
T ss_dssp SHHHHHHTTCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCCEEEECEEEEECGGGCEEE-TTEEECCSCEEEC
T ss_pred cccccccccCCCCCCCeEEEEEEEEecCCceeccccCcccccCCCCCceEEeeCCCcCCccccccc-CCEEeeCCCcccC
Confidence 999999999987677899999999999999999999998899999999999999999999999888 9999999999987
Q ss_pred CCCC---ccCcCceEEEeecCceeeeeEEEEEEEe
Q 006883 595 LNSK---GHLLYNEYIVYSVDQIRMRYVVQVNFKY 626 (627)
Q Consensus 595 ~~~~---~~l~ynEYIVYd~~Qir~rYLV~~~~~~ 626 (627)
+... .+|.||||||||++||||||||+|+|+|
T Consensus 334 ~~~~~~~~~L~ynEyIVYd~~Qir~rYLv~v~~~~ 368 (368)
T 3kjd_A 334 GILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368 (368)
T ss_dssp CCCCSSSCCEEECEEEESSGGGEEEEEEEEEEEEC
T ss_pred CCCCCcCccccCCceEEechhHeeEEEEEEEEeEC
Confidence 7543 3699999999999999999999999998
No 3
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=100.00 E-value=4.4e-93 Score=757.20 Aligned_cols=347 Identities=48% Similarity=0.811 Sum_probs=329.4
Q ss_pred CCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCC-hhHHHHhhhhcccccc
Q 006883 276 NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPD-RRKLEELSGEFYTVIP 354 (627)
Q Consensus 276 ~skL~~~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~-~~~l~~lsn~fYtlIP 354 (627)
+|+|+++||+||++|||+++|+++|.+|++|+.+||||+||++||.+||+||++|+++|++.. .+.+.+|||+|||+||
T Consensus 1 ~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~~~~vL~~i~~~l~~~~~~~~l~~ls~~fyt~IP 80 (350)
T 1efy_A 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGGSESQILDLSNRFYTLIP 80 (350)
T ss_dssp CCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhHHhhcC
Confidence 489999999999999999999999999999999999999999999999999999999997654 5889999999999999
Q ss_pred CCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhccccc-CCCchHHhhcccceeEEcCCCCHHHHHHHHHHh
Q 006883 355 HDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQ-ADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLL 433 (627)
Q Consensus 355 h~fg~~~~~~~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~~~-~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~ 433 (627)
|+||++ +||+|++.+.|++|++|||+|.|||+|++|++.+.... .||+|.+|++|+|+|++|+++|+||++|++||+
T Consensus 81 h~fg~~--~p~~i~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~~~ 158 (350)
T 1efy_A 81 HDFGMK--KPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVK 158 (350)
T ss_dssp BCCCSS--CCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCHHHHHHHHTCEEEEECCTTSHHHHHHHHHHH
T ss_pred ccccCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHhCCEEEEcCCCChHHHHHHHHHh
Confidence 999987 57899999999999999999999999999998765443 799999999999999999999999999999999
Q ss_pred cccCCCCCCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeec
Q 006883 434 NTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFA 513 (627)
Q Consensus 434 ~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFA 513 (627)
+|++++|..++++|.+||||+|++++++|. .+++.+|+++|||||+.+||.+||++||+++|++++.+|+|||+|||||
T Consensus 159 ~t~~~~h~~~~~~I~~I~rV~~~~~~~~f~-~~k~~~n~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~g~~fG~GiYfa 237 (350)
T 1efy_A 159 NTHAATHNAYDLKVVEIFRIEREGESQRYK-PFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFA 237 (350)
T ss_dssp HTCCGGGCSEEEEEEEEEEEEETTHHHHHG-GGGGSSCEEEEEEEECGGGHHHHHHHCSCCCCTTSCGGGSTTSSSEEEB
T ss_pred cccCCCCCCCcccccceEEecCHHHHHHHH-HhhccCCeeEEEeCCchHHHHHHHHcCCCcccccCCCccCceecccccc
Confidence 999989987899999999999999999998 7788999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccc
Q 006883 514 DMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKE 593 (627)
Q Consensus 514 d~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~ 593 (627)
+++|||++||.++..++.++||||+|+||++.++..+++ +.+||+|+|||+|+|++.|||++ ..+.|||+||+|++++
T Consensus 238 ~~~skS~~Y~~~~~~~~~~~m~Lc~V~lG~~~~~~~~~~-~~~~p~g~~Sv~g~g~~~Pd~~~-~~~~dgv~vP~G~~~~ 315 (350)
T 1efy_A 238 DMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASH-ITKLPKGKHSVKGLGKTAPDPTA-TTTLDGVEVPLGNGIS 315 (350)
T ss_dssp SSHHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCC-CCSCCTTCCEEEECCSEEECGGG-CEEETTEEECCSCEEE
T ss_pred cchhhhhccccCCCCCCeEEEEEEEEecCCceeccCcch-hhhcCCCCcceeeccccCCCccc-cccCCCeeeecCcccC
Confidence 999999999998777789999999999999999999998 78999999999999999999998 6778999999999998
Q ss_pred cCCCCccCcCceEEEeecCceeeeeEEEEEEEeC
Q 006883 594 QLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 627 (627)
Q Consensus 594 ~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~~~~~ 627 (627)
+...+++|.||||||||++||+|+|||+|+|+|+
T Consensus 316 ~~~~~~~l~~~EyVVYd~~Qi~p~YLI~~~~~~~ 349 (350)
T 1efy_A 316 TGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 349 (350)
T ss_dssp CSCCSSSCSBCEEEESCGGGEEEEEEEEEEEEEC
T ss_pred CCCCCCCCCCCEEEEEchhheeEEEEEEEEEEec
Confidence 7777788999999999999999999999999996
No 4
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=100.00 E-value=3.1e-87 Score=714.30 Aligned_cols=339 Identities=37% Similarity=0.634 Sum_probs=314.1
Q ss_pred CCCCCcHHHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCh--hHHHHhhhhcccc
Q 006883 275 RNTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDR--RKLEELSGEFYTV 352 (627)
Q Consensus 275 ~~skL~~~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~--~~l~~lsn~fYtl 352 (627)
.+|+|+++||+||++|||+++|+++|.+|+||+.+||||+||++||.+||+||++|+++|++... ..+.+|||+|||+
T Consensus 6 ~~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~g~~vL~~i~~~l~~~~~~~~~~~~ls~~fyt~ 85 (357)
T 3c4h_A 6 QPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDGGQSLEELSSHFYTV 85 (357)
T ss_dssp CCCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCTTTCCHHHHHHHHHHHHHHHHHHTSCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 37999999999999999999999999999999999999999999999999999999999987654 3499999999999
Q ss_pred ccCCCCCCccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhccccc-----CCCchHHhhcccceeEEcCCCCHHHHH
Q 006883 353 IPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQ-----ADPLYSHYQRLHCQLTPLEVDSLEFSL 427 (627)
Q Consensus 353 IPh~fg~~~~~~~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~~~-----~~pld~~Y~~L~~~l~~L~~~s~Eyk~ 427 (627)
|||+||++ +||+|++.+.|++|++|||+|.|||+|++|++.+.... .||+|++|++|+|+|++|+++|+||++
T Consensus 86 IPh~fg~~--~p~~i~~~~~l~~k~~lle~l~di~~a~~l~~~~~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~ 163 (357)
T 3c4h_A 86 IPHNFGHS--QPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKV 163 (357)
T ss_dssp SCBCSTTS--CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCSEECCHHHHHHHHHCCEEEECCTTSTTHHH
T ss_pred cCcccCCC--CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCChhHHHHHHhCCEEEECCCCChHHHH
Confidence 99999987 57899999999999999999999999999998653333 699999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeee
Q 006883 428 IANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFG 507 (627)
Q Consensus 428 I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFG 507 (627)
|++||++| +++|.. ++|.+||||+|+.++++|. .+++.+|+++|||||+.+||++|+++||+++|+ +|+|||
T Consensus 164 I~~~f~~t-~~~~~~--~~I~~I~rV~n~~~~~rF~-~~k~~~n~~~LfHGt~~~~~~~I~~~Gf~~~~~----~g~~fG 235 (357)
T 3c4h_A 164 IQTYLEQT-GSNHRC--PTLQHIWKVNQEGEEDRFQ-AHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPH----SGGRVG 235 (357)
T ss_dssp HHHHHHHH-SCSSSC--CCEEEEEEEECTTSHHHHH-TTTTCCCEEEEEEEECHHHHHHHHHHCSCCCTT----CCCTTC
T ss_pred HHHHHHhc-CCCCCC--ccEEEEEEecCHHHHHHHH-HHhccCCeEEEEeCCChhhHHHHHHcCCcccCC----CCCceE
Confidence 99999999 777743 8999999999999999999 667789999999999999999999999999765 899999
Q ss_pred eeeeecccccccccccc--CCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceecc-CC-
Q 006883 508 KGVYFADMFSKSANYCY--ASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLE-DG- 583 (627)
Q Consensus 508 kGIYFAd~~SKSa~Yc~--~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~-dG- 583 (627)
+|||||+++++|++||. +...++.++||||+|+||++++++.+++++..||+|||||+|+|++.|+|++.+.+. ||
T Consensus 236 ~GiYfa~~~skS~~Y~~~~~~~~~~~~~mllc~V~lG~~~~~~~~~~~~~~pP~g~dSv~g~g~~~P~~~~~~~~~~dg~ 315 (357)
T 3c4h_A 236 KGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQ 315 (357)
T ss_dssp SSEEEBSSHHHHHTTCCCEEETTEEEEEEEEEEEECCSEEEESSCCTTCSSCCTTCSEEEECCSEEECGGGCEEEEETTE
T ss_pred CCEecCCcchhhhhhcccCCCCCCCeEEEEEEEEecCCceeccCCchhccCCCCCCCccceecCCCCCcccceeeccCCC
Confidence 99999999999999999 544567899999999999999999999988899999999999999999999988876 99
Q ss_pred -eEecCCCccccCC-CCccCcCceEEEeecCceeeeeEEEEE
Q 006883 584 -VIVPLGKPKEQLN-SKGHLLYNEYIVYSVDQIRMRYVVQVN 623 (627)
Q Consensus 584 -v~vP~Gk~~~~~~-~~~~l~ynEYIVYd~~Qir~rYLV~~~ 623 (627)
|+||+|++++.+. .+++|.||||||||++||+|||||+|+
T Consensus 316 ~v~vp~G~~v~~~~~~~~~l~~nEyVVYd~~Qv~p~YLi~~k 357 (357)
T 3c4h_A 316 QVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVH 357 (357)
T ss_dssp EEEECCSCEEECGGGTTCSCSBCEEEESSGGGEEEEEEEEEC
T ss_pred eEEecCCCcccCCCCCCCccCCCEEEEEchhheeEEEEEEEC
Confidence 9999999998753 457899999999999999999999985
No 5
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=100.00 E-value=4.1e-39 Score=311.28 Aligned_cols=167 Identities=17% Similarity=0.245 Sum_probs=144.4
Q ss_pred cccceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHHHHHhcc--CCCceEEeecCCCcCHHHH
Q 006883 410 RLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSN--SKNRMLLWHGSRLTNWTGI 487 (627)
Q Consensus 410 ~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~~~--~~N~~LLwHGSr~~N~~gI 487 (627)
.++|.|++|+++|+||++|+++|.+|+. .++|.+||||+|+.++++|. .+++ ..|+++|||||+.+|+++|
T Consensus 2 ~~~~~l~~L~~~s~ey~~v~~~f~~t~~------~~~I~~I~rv~n~~~~~~f~-~~k~~~~~n~~~l~HGt~~~~~~~I 74 (173)
T 2x5y_A 2 SKKYKLSEIHHLHPEYVRVSEHFKASMK------NFKIEKIKKIENSELLDKFT-WKKSQMKEEGKLLFYATSRAYVESI 74 (173)
T ss_dssp -CCCEEEECCTTSHHHHHHHHHHHTTCT------TEEEEEEEEEECHHHHHHHH-HHHHHHTCCCEEEEEEEEGGGHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhHCC------CCEEeEEEEECCHHHHHHHH-HHHHHHhhCcEEEEecCCcccHHHH
Confidence 4689999999999999999999999874 47899999999999999999 4333 4799999999999999999
Q ss_pred hhhCCC--CCCCCCCCCceeeeeeeeeccccccccccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCcccc
Q 006883 488 LSQGLR--IAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTK 565 (627)
Q Consensus 488 Ls~GLr--iaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~ 565 (627)
+++||. ++++ +|+|||+|||||+++++|++||.++. +.++||||+|++|+... .+.....||+|||||.
T Consensus 75 ~~~Gf~~~~~~~----~g~~~G~GiYfa~~~s~s~~Y~~~~~--~~~~m~lc~V~~G~~~~---~~~~~~~pp~~ydSv~ 145 (173)
T 2x5y_A 75 CSNNFDSFLHET----HENKYGKGIYFAKDAIYSHKNCPYDA--KNVVMFVAQVLVGKFIE---GNITYTSPPPQFDSCV 145 (173)
T ss_dssp HHHCCCHHHHCC----SCSSSCSSEEEESSHHHHHHHCCSCG--GGEEEEEEEECCCSEEE---CCTTCSSCCTTCCEEE
T ss_pred HHhCCCCcccCC----CcCCccCeEECCCChhhHhhcCCCCC--CCeEEEEEEEecCcccc---CCcccCCCCCCCCceE
Confidence 999995 4443 79999999999999999999998764 56999999999999543 4445678999999998
Q ss_pred ccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEEEE
Q 006883 566 GVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNF 624 (627)
Q Consensus 566 g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~~ 624 (627)
|.. ..++||||||.+||+|+|||.|+-
T Consensus 146 ~~~--------------------------------~~~~e~VV~~~~q~~P~YlI~y~~ 172 (173)
T 2x5y_A 146 DTR--------------------------------SNPSVFVIFQKDQVYPQYVIEYTE 172 (173)
T ss_dssp SCS--------------------------------SSCCEEEECCGGGEEEEEEEEEEE
T ss_pred CCC--------------------------------CCCCEEEEEeCCeEeEEEEEEEeC
Confidence 731 135899999999999999999873
No 6
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=100.00 E-value=8.3e-38 Score=316.58 Aligned_cols=180 Identities=27% Similarity=0.392 Sum_probs=149.7
Q ss_pred ccceeEEcCCCCHHHHHHHHHHhcccCCCCCC-------ccccccceEEEeechHhHHHHHH---h----ccCCCceEEe
Q 006883 411 LHCQLTPLEVDSLEFSLIANYLLNTHAKTHSA-------YSVDIVQIFRVEREGETERFRKQ---F----SNSKNRMLLW 476 (627)
Q Consensus 411 L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~-------~~~~I~~IfrV~r~~e~~rF~~~---~----~~~~N~~LLw 476 (627)
.+|.|.+|+++|+||++|++||.+|++..|.. +.++|.+|+||+|+.++++|... + ...+|+++||
T Consensus 29 ~~~~l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l~~~y~~~k~~m~~~~~~~~ne~~Lf 108 (240)
T 3u9h_A 29 SGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLF 108 (240)
T ss_dssp -CCEEEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 46899999999999999999999999753321 37899999999999999999832 1 2468999999
Q ss_pred ecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCCC-------------CCeeEEEEEEEeecc
Q 006883 477 HGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPS-------------ATAGVLLLCEVALGD 543 (627)
Q Consensus 477 HGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~-------------~~~~~mlLCeVALGk 543 (627)
|||+ ++.+|+++||+++. +.+|+|||+|||||++++||++||.+... .+.++||||+|+||+
T Consensus 109 HGt~--~~~~I~~~Gf~~~~---~~~g~~~G~GiYfa~~~s~S~~y~~~~~~~~~~~~~~d~~~~~~~~~mlLc~V~lG~ 183 (240)
T 3u9h_A 109 HGSP--FVNAIIHKGFDERH---AYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGK 183 (240)
T ss_dssp ECCT--THHHHHHHCCCGGG---CBTTSTTCSBEEEESSHHHHHTTTTSGGGTTCCTTTCCTTCSSSCEEEEEEEEECCS
T ss_pred echH--hHHHHHHcCCCccc---ccCCCcceeeEEecCChhhhhhhhhccccccccccccccccccCceEEEEEEEecCc
Confidence 9998 57799999999863 34789999999999999999999975311 257999999999999
Q ss_pred eeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEEE
Q 006883 544 MSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVN 623 (627)
Q Consensus 544 ~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~ 623 (627)
+.+...+.. ...||+|||||.|... ..+|.|+||||||++||+|+|||.|+
T Consensus 184 ~~~~~~~~~-~~~pP~gyDSvvg~~~----------------------------~~~l~~~E~VVy~~~qi~P~YlI~y~ 234 (240)
T 3u9h_A 184 SFLQFSAMK-MAHSPPGHHSVTGRPS----------------------------VNGLALAEYVIYRGEQAYPEYLITYQ 234 (240)
T ss_dssp EEEEEECC---CCCCTTCSEEEEEES----------------------------SCTTCCCEEEESCGGGEEEEEEEEEE
T ss_pred eEeecCccc-ccCCCCCCCceecCCC----------------------------CCCCCCCEEEEEcccceeEEEEEEEE
Confidence 998877654 4678999999998421 12478999999999999999999998
Q ss_pred E
Q 006883 624 F 624 (627)
Q Consensus 624 ~ 624 (627)
+
T Consensus 235 ~ 235 (240)
T 3u9h_A 235 I 235 (240)
T ss_dssp E
T ss_pred c
Confidence 5
No 7
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=303.50 Aligned_cols=170 Identities=21% Similarity=0.225 Sum_probs=140.3
Q ss_pred cccceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHHHHH---hc-c----CCCceEEeecCCC
Q 006883 410 RLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQ---FS-N----SKNRMLLWHGSRL 481 (627)
Q Consensus 410 ~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~---~~-~----~~N~~LLwHGSr~ 481 (627)
.++|.|++|+++|+||+.|+++|.+|++ .++|.+|+||+++.++++|... +. . ..|+++|||||+.
T Consensus 9 ~~~~~l~~L~~~s~Ey~~v~~~f~~t~~------~~~I~~I~rv~n~~l~~~f~~~k~~~~~~~~~~~~ne~~LfHGt~~ 82 (198)
T 2pqf_A 9 DPGFQKITLSSSSEEYQKVWNLFNRTLP------FYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSA 82 (198)
T ss_dssp CCSCEEEECCTTSHHHHHHHHHHHTTCT------TSEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCCEEEEEEECCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCC------CCEEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEecCCH
Confidence 4689999999999999999999999875 3689999999999999999831 11 1 3599999999999
Q ss_pred cCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCC-
Q 006883 482 TNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDG- 560 (627)
Q Consensus 482 ~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G- 560 (627)
+|+.+|+++||+++. ++.+|+|||+|||||+++|||++||.++. +.++||||+|+||++.. .+.....||++
T Consensus 83 ~~~~~I~~~Gf~~~~--~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~--~~~~m~lcrV~~G~~~~---~~~~~~~pp~~~ 155 (198)
T 2pqf_A 83 IFVDAICQQNFDWRV--CGVHGTSYGKGSYFARDAAYSHHYSKSDT--QTHTMFLARVLVGEFVR---GNASFVRPPAKE 155 (198)
T ss_dssp GGHHHHHHHCCCTTT--TCCCSSCSCSSEEEESSHHHHHTTCCCSS--SEEEEEEEEEECCSEEE---CCTTCSSCCBCS
T ss_pred HHHHHHHHhCCCCcc--cCCCCCcccCeEECcCCcchhhhcccCCC--CceEEEEEEEecCCccc---CCccccCCCCCC
Confidence 999999999998653 34579999999999999999999998764 88999999999999864 33333455554
Q ss_pred ------CccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEEEE
Q 006883 561 ------KLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNF 624 (627)
Q Consensus 561 ------~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~~ 624 (627)
||||.+- ...++||||||.+||+|+|||+|+.
T Consensus 156 ~~~~~~yDSvv~~--------------------------------~~~~~e~VVy~~~qiyP~YlI~y~~ 193 (198)
T 2pqf_A 156 GWSNAFYDSCVNS--------------------------------VSDPSIFVIFEKHQVYPEYVIQYTT 193 (198)
T ss_dssp CC--CBCSEEESC--------------------------------SSSCCEEEESCGGGEEEEEEEEEES
T ss_pred CCCCCCcccCcCC--------------------------------CCCCCEEEEECCCcEeeEEEEEEEc
Confidence 4554431 0136899999999999999999974
No 8
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=275.69 Aligned_cols=121 Identities=40% Similarity=0.670 Sum_probs=111.4
Q ss_pred eeeeeccCccccCCCCCcccCCceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCce
Q 006883 126 IVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDK 205 (627)
Q Consensus 126 ~~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k 205 (627)
..++++||.++|||.||......+|||+| |+|+|++||+++|+|+||+|||++++.++ |+||++|||||+.||++
T Consensus 4 ~~~~~~k~~~~VD~~~~~~~~~~~~V~~d----y~~~L~~~d~~~n~nrfY~lQll~~~~g~-~~v~~~WGRIG~~Gq~~ 78 (124)
T 2eoc_A 4 GSSGAEKRIIRVDPTCPLSSNPGTQVYED----YNCTLNQTNIENNNNKFYIIQLLQDSNRF-FTCWNRWGRVGEVGQSK 78 (124)
T ss_dssp CCCCSCCCCCCCCSSSSTTTSTTCEEEEE----EEEEEEEEETTTTEEEEEEEEEEECTTSC-EEEEEECSCTTSCCCCE
T ss_pred cccceecCCcccCCCccccccCCcEEeEe----EEEEEEeecCCCCceeEEEEEEEecCCce-EEEEEEECCCCCCCceE
Confidence 34678899999999998654458999987 99999999999999999999999976554 99999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHHHHHhhcccccCCCCccCCCCceeeeecc
Q 006883 206 IFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDY 252 (627)
Q Consensus 206 ~~~~f~s~e~Ai~~F~kkF~eKTgn~W~~r~~F~~~pgKY~~ve~d~ 252 (627)
+. +|+++++|+++|+++|++||||+|++|.+|+++||||+||||||
T Consensus 79 ~~-~~~s~~~A~~~F~k~f~~Ktgn~w~~r~~f~~~pgky~~~e~d~ 124 (124)
T 2eoc_A 79 IN-HFTRLEDAKKDFEKKFREKTKNNWAERDHFVSHPGKYTLIEVQA 124 (124)
T ss_dssp EE-EESSHHHHHHHHHHHHHHHHSSCSTTGGGCCCCSSSCEEECCCC
T ss_pred ee-cCCCHHHHHHHHHHHHHHHHcCCcccccCcccCCCceeEEEecC
Confidence 76 68999999999999999999999999999999999999999986
No 9
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=100.00 E-value=1.6e-35 Score=296.66 Aligned_cols=171 Identities=20% Similarity=0.209 Sum_probs=136.9
Q ss_pred hcccceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHHHHHh-------ccCCCceEEeecCCC
Q 006883 409 QRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQF-------SNSKNRMLLWHGSRL 481 (627)
Q Consensus 409 ~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~-------~~~~N~~LLwHGSr~ 481 (627)
...+|.|++|+++++||+.|+++|.+|++ .++|.+|+||+++.++++|...- ...+|+++|||||+.
T Consensus 33 ~~~~~~l~~L~~~s~ey~~V~~~f~~t~~------~~~I~~I~rV~n~~l~~~f~~~k~~~~~k~~~~~ne~lLfHGt~~ 106 (221)
T 3blj_A 33 NHQLFCMVQLEPGQSEYNTIKDKFTRTCS------SYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDA 106 (221)
T ss_dssp TTCSEEEEECCTTSHHHHHHHHHHHHHHT------TSEEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEECG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHhhCC------CCEEEEEEEEcChhHHHHHHHHHHHHHHhcCCCCceEEEeccCCh
Confidence 34579999999999999999999999985 36899999999999999998321 135899999999999
Q ss_pred cCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccc--cccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCC-
Q 006883 482 TNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSAN--YCYASPSATAGVLLLCEVALGDMSELLYANYDADKLP- 558 (627)
Q Consensus 482 ~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~--Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p- 558 (627)
+|+++|+++||+. +.++.+|+|||+|||||++++||++ ||.++. ++.++||||+|++|++..- +..+..||
T Consensus 107 ~~~~~I~~~Gf~~--~~a~~~g~~~G~GiYfa~~~s~S~~~~Y~~~~~-~g~~~mllcrV~~G~~~~g---~~~~~~pp~ 180 (221)
T 3blj_A 107 DSVPYVNQHGFNR--SCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDS-NGRKHMYVVRVLTGVFTKG---RAGLVTPPP 180 (221)
T ss_dssp GGHHHHHHHCCCT--TTC-----CCCSSEEEESSHHHHHSTTTSCCCT-TSCEEEEEEEEECCSEEEC---CTTCSSCCB
T ss_pred HHHHHHHHhCCCC--cccCCCCCccCCeEECCcchhhhcCcccccCCC-CCcEEEEEEEEEeCCccCC---ChhccCCCc
Confidence 9999999999995 3466689999999999999999999 887653 5789999999999997542 22222333
Q ss_pred -------CCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEEE
Q 006883 559 -------DGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVN 623 (627)
Q Consensus 559 -------~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~ 623 (627)
.|||||.|.. ..++||||||.+||+|+|||.|+
T Consensus 181 ~~~~~~~~~yDSvv~~~--------------------------------~~~~e~VVy~~~qiyP~YlI~y~ 220 (221)
T 3blj_A 181 KNPHNPTDLFDSVTNNT--------------------------------RSPKLFVVFFDNQAYPEYLITFT 220 (221)
T ss_dssp SSTTSTTSBCSEEESCS--------------------------------SSCSEEEECSTTSEEEEEEEEEE
T ss_pred ccCCCCCCCCCccccCC--------------------------------CCCCEEEEEcCCeEeeeEEEEEE
Confidence 3677776521 13689999999999999999986
No 10
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=293.19 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=142.9
Q ss_pred cceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHHHHH-------hccCCCceEEeecCCCcCH
Q 006883 412 HCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQ-------FSNSKNRMLLWHGSRLTNW 484 (627)
Q Consensus 412 ~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~-------~~~~~N~~LLwHGSr~~N~ 484 (627)
-|.|++|+++|+||+.|+++|.+|++.+|. .++|.+|+||+|+.+|++|... .....|+++|||||+.+++
T Consensus 10 ~~~L~~L~~~s~Ey~~V~~~F~~t~~~~~~--~~~I~~I~RIqn~~l~~~f~~~k~~m~~k~~~~~ne~~LfHGt~~~~~ 87 (217)
T 3hkv_A 10 WNNLERLAENTGEFQEVVRAFYDTLDAARS--SIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAV 87 (217)
T ss_dssp CCCEEECCSSSHHHHHHHHHHHHTTGGGGG--TEEEEEEEEECCHHHHHHHHHHHHHHHHHCCSSCSEEEEEEEECGGGH
T ss_pred cccceECCCCChHHHHHHHHHHhhcCCcCC--CceEEEEEEECChhHHHHHHHHHHHHHHhcCCCCceEEEEeCCCHHHH
Confidence 489999999999999999999999976553 5789999999999999999832 1235799999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCceeeeeeeeecccccccc--ccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCC---
Q 006883 485 TGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSA--NYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPD--- 559 (627)
Q Consensus 485 ~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa--~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~--- 559 (627)
.+|+++||+.+. ++.+|+|||+|||||++++||+ +||.++ .++.++||||+|+||++.. .+.....||.
T Consensus 88 ~~I~~~GF~~~~--~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~-~~g~~~m~lcrVl~G~~~~---g~~~~~~PP~~~~ 161 (217)
T 3hkv_A 88 PDICAHGFNRSF--CGRNATVYGKGVYFAKRASLSVQDRYSPPN-ADGHKAVFVARVLTGDYGQ---GRRGLRAPPLRGP 161 (217)
T ss_dssp HHHHHHCSCTTT--SCCCCCTTCSSEEEESSHHHHTSTTTSCCC-TTSEEEEEEEEEECCSEEE---CCTTCSSSCBCCT
T ss_pred HHHHhcCCcccc--cCcchhccccceeccCCccccccccccccc-CCCceEEEEEEEEcccccc---CCCccCCCCCCcc
Confidence 999999997532 3347899999999999999997 699765 3678999999999999643 2222334443
Q ss_pred -----CCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEEEEE
Q 006883 560 -----GKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFK 625 (627)
Q Consensus 560 -----G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~~~ 625 (627)
+||||.+-- .+++|||||+.+||+|.|||.|+-.
T Consensus 162 ~~~~~~yDSvvd~~--------------------------------~np~~~VVf~~~qiyPeYLI~y~~~ 200 (217)
T 3hkv_A 162 GHVLLRYDSAMDCI--------------------------------CQPSIFVIFHDTQALPTHLITCEHV 200 (217)
T ss_dssp TCSSSBCSEEESCS--------------------------------SSCCEEEECCTTSEEEEEEEEEEEC
T ss_pred CCCCCceeEEECCC--------------------------------CCCCEEEEEcCCcCceeEEEEEecC
Confidence 588887621 2368999999999999999999853
No 11
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=100.00 E-value=7.3e-35 Score=286.31 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=137.9
Q ss_pred cceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHHHHH-------hccCCCceEEeecCCCcCH
Q 006883 412 HCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQ-------FSNSKNRMLLWHGSRLTNW 484 (627)
Q Consensus 412 ~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~-------~~~~~N~~LLwHGSr~~N~ 484 (627)
+|.|++|+++|+||+.|+++|.+|+. .++|.+|+||+++.++++|... ....+|+++|||||+.+|+
T Consensus 8 ~~~l~~L~~~s~Ey~~V~~~f~~t~~------~~~I~~I~rI~n~~l~~~f~~~k~~~~~k~~~~~ne~~L~HGt~~~~~ 81 (193)
T 3smj_A 8 NFCVVELLPSDPEYNTVASKFNQTCS------HFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSV 81 (193)
T ss_dssp CEEEEECCTTSTTHHHHHHHHHHHHT------TSEEEEEEEEECHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEECGGGH
T ss_pred CEEEEECCCCChHHHHHHHHHHhhCC------CCeEEEEEEECCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCHHHH
Confidence 58999999999999999999999974 4689999999999999999832 1235799999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCceeeeeeeeecccccccccc--ccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCC---
Q 006883 485 TGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANY--CYASPSATAGVLLLCEVALGDMSELLYANYDADKLPD--- 559 (627)
Q Consensus 485 ~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Y--c~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~--- 559 (627)
.+|+++||+.+. ++.+|+|||+|||||+++++|++| |.+. .++.++||||+|+||+... .+.....||+
T Consensus 82 ~~I~~~Gf~~~~--~~~~~~~~G~GiYfa~~~s~S~~~~y~~~~-~~g~~~mllcrV~~G~~~~---g~~~~~~pP~~~~ 155 (193)
T 3smj_A 82 PHVNRNGFNRSY--AGKNAVAYGKGTYFAVNANYSANDTYSRPD-ANGRKHVYYVRVLTGIYTH---GNHSLIVPPSKNP 155 (193)
T ss_dssp HHHHHHTTCCCC--TTGGGSSSCCCEEEESSHHHHTSTTTSCCC-TTSCEEEEEEEEECCSEEE---CCSSCCSCCBSCT
T ss_pred HHHHHcCCCCcc--CCCCccccCCeEEecCCcchhcCccccCCC-CCCcEEEEEEEEEeccccc---CCCccCCCCCccC
Confidence 999999997542 344689999999999999999994 5443 3578999999999999753 2233344443
Q ss_pred -----CCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEEE
Q 006883 560 -----GKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVN 623 (627)
Q Consensus 560 -----G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~~ 623 (627)
+||||.+.- -.++|||||+.+||+|.|||.|+
T Consensus 156 ~~~~~~yDSvv~~~--------------------------------~~p~~~VVf~~~qiyP~YlI~y~ 192 (193)
T 3smj_A 156 QNPTDLYDTVTDNV--------------------------------HHPSLFVAFYDYQAYPEYLITFR 192 (193)
T ss_dssp TSTTCBCSEEESCS--------------------------------SSCSEEEECSTTCEEEEEEEEEE
T ss_pred CCCCCCccceeCCC--------------------------------CCCCEEEEEeCCceeeEEEEEEe
Confidence 588887621 02579999999999999999986
No 12
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=99.83 E-value=8.2e-21 Score=194.57 Aligned_cols=119 Identities=21% Similarity=0.335 Sum_probs=96.4
Q ss_pred ceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEe-echHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhC
Q 006883 413 CQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVE-REGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQG 491 (627)
Q Consensus 413 ~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~-r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~G 491 (627)
..|..|+ -.+|..|.+++...+.+ ......||+|. +.++.++|+ .+++..|++++||||+.+||.+||++|
T Consensus 93 ~~l~~l~--k~ef~~l~~~~g~~~~p-----~~~P~~If~V~~~~~~~~~f~-~~~~~~~~~~~~HGS~l~n~~sIL~~G 164 (277)
T 4f0d_A 93 LTIHSAG--KAEFEKIQKLTGAPHTP-----VPAPDFLFEIEYFDPANAKFY-ETKGERDLIYAFHGSRLENFHSIIHNG 164 (277)
T ss_dssp EEEEECC--SHHHHHHHHHTCSCSSC-----CCCCSEEEEEEECTTHHHHHH-HHHTTSCEEEEEEECCGGGHHHHHHHC
T ss_pred cceEecC--HHHHHHHHHHhCCCCCC-----CCCCceeEEEecCcchhhHHH-HhhccCCcEEEEcCCcHHHHHHHHhcc
Confidence 4566665 45788888876543322 34678999999 778889999 778889999999999999999999999
Q ss_pred CCCCCCCCCCCceeeeeeeeeccccccccccccCCC------CC-CeeEEEEEEEeecc
Q 006883 492 LRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASP------SA-TAGVLLLCEVALGD 543 (627)
Q Consensus 492 LriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~------~~-~~~~mlLCeVALGk 543 (627)
|+++| .+|+|||+|||||+++++|++||.++. -+ ..++|+||||+..-
T Consensus 165 L~~~~----~~g~~fG~GiY~a~~~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p 219 (277)
T 4f0d_A 165 LHCHL----NKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHP 219 (277)
T ss_dssp SCCC------CCCSSSCCEEEBSCHHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCC
T ss_pred cccCc----ccccccCCceEeecchHHHhhhccCCCCcCcccccccceEEEEEEEecCC
Confidence 99986 489999999999999999999997532 12 26899999999754
No 13
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.10 E-value=1.9e-11 Score=114.65 Aligned_cols=89 Identities=26% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccccCCCcccCCCCCCCCCCCCccccchhhhccccHHHHHHHH
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNGSQKVKSIESFGQMGVKQLREQA 82 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (627)
++|+|.+||++|++|||++.|.|++||+||++.++... ..++++ -...++...|..|+|.+|++++
T Consensus 62 ~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kv-----------e~s~ee---i~~~~~~g~l~klTV~~Lk~~l 127 (151)
T 1jjr_A 62 GKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDKV-----------EYSEEE---LKTHISKGTLGKFTVPMLKEAC 127 (151)
T ss_dssp TSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC--------------------------------------------
T ss_pred HhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhc-----------cccHHH---HHHHHhcCccccccHHHHHHHH
Confidence 58999999999999999999999999999999985432 112221 1334577889999999999999
Q ss_pred HhhccCCCCchHHHHHHHhhccc
Q 006883 83 DLRGLSKAGTKKELLERLCNHAE 105 (627)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ 105 (627)
+.++++..|+|.++++||++..+
T Consensus 128 ~~~gl~~~GkKaeLieRi~~~~~ 150 (151)
T 1jjr_A 128 RAYGLKSGLKKQELLEALTKHFQ 150 (151)
T ss_dssp -----------------------
T ss_pred HHcCCCCCCcHHHHHHHHHHHhc
Confidence 99999999999999999987543
No 14
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.09 E-value=4.3e-11 Score=92.03 Aligned_cols=39 Identities=44% Similarity=0.650 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhc
Q 006883 2 ASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEEN 40 (627)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~ 40 (627)
.++|||+|||+||++|||+++|.|++||+||+++++.++
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~e~ 48 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGPS 48 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhccc
Confidence 368999999999999999999999999999999986543
No 15
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=99.02 E-value=2.1e-10 Score=88.57 Aligned_cols=39 Identities=46% Similarity=0.508 Sum_probs=36.3
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK 41 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~ 41 (627)
++|||.|||+||++|||+++|.|++||+||+++.++++.
T Consensus 6 ~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~~ 44 (51)
T 1h1j_S 6 SSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESKG 44 (51)
T ss_dssp GGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSCC
T ss_pred HHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhccC
Confidence 689999999999999999999999999999999877654
No 16
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=98.98 E-value=5.7e-10 Score=87.44 Aligned_cols=40 Identities=35% Similarity=0.536 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc
Q 006883 2 ASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK 41 (627)
Q Consensus 2 ~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~ 41 (627)
.++|||.|||++|++|||+++|.|++||+||++++..+++
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~~~ 49 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEHAE 49 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHTCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCcc
Confidence 4799999999999999999999999999999999988754
No 17
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=98.95 E-value=7.6e-10 Score=91.47 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=36.4
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK 41 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~ 41 (627)
++|||.|||+||++|||+++|.|++||+||+++++.++.
T Consensus 27 ~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~~ 65 (75)
T 2kvu_A 27 DDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQISP 65 (75)
T ss_dssp TTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTSC
T ss_pred HHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccCC
Confidence 589999999999999999999999999999999987653
No 18
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=5.3e-06 Score=73.94 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhc
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEEN 40 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~ 40 (627)
+||||+||++.|+.+||+++|.|++|++||++.++...
T Consensus 38 ~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 38 ELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp TTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999997654
No 19
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=1.3e-05 Score=85.33 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=54.1
Q ss_pred CCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHHHHHHHhhcccccCC
Q 006883 168 VGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRR 236 (627)
Q Consensus 168 i~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W~~r~ 236 (627)
...|++|||.|.+. ...|-++|||||+.||.+.+. |.+.++|.++|.++-.+|+..+|....
T Consensus 8 ~~~~~~kf~~~~~~------~~~~~~~~GriG~~g~~~~~~-f~~~~~a~~~~~~l~~~k~~kGy~~~~ 69 (362)
T 2ra8_A 8 QDFKSQKFWSIDVR------GTDVIVNYGKLGTDGQTQVKN-FSSAGEAEKAAGKLIAEKTKKGYVETL 69 (362)
T ss_dssp ESSSCEEEEEEEEE------TTEEEEEEEETTSCCEEEEEE-CSSHHHHHHHHHHHHHHHHHTTCEECC
T ss_pred ccCCcCceEEEEEe------ccEEEEEECCCCCCceEEeee-CCCHHHHHHHHHHHHHHHHhcCCcccc
Confidence 34689999999986 237889999999999999775 999999999999999999999987653
No 20
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.11 E-value=0.0063 Score=46.61 Aligned_cols=41 Identities=37% Similarity=0.428 Sum_probs=36.1
Q ss_pred chhhhccccHHHHHHHHHhhccCCCCchHHHHHHHhhcccC
Q 006883 66 SIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQ 106 (627)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (627)
...++..|+|.+|++.+..|+++..|+|.++++||.+..+.
T Consensus 6 s~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~ 46 (50)
T 1zrj_A 6 SGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALSG 46 (50)
T ss_dssp CCCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCC
T ss_pred CcCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999765443
No 21
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=96.03 E-value=0.0044 Score=47.67 Aligned_cols=38 Identities=34% Similarity=0.522 Sum_probs=34.4
Q ss_pred hhhccccHHHHHHHHHhhccCCCCchHHHHHHHhhccc
Q 006883 68 ESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAE 105 (627)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (627)
.++..|+|.+|++.+..|+++..|+|.++++||.+..+
T Consensus 3 ~~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 3 ADYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp CSGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred chHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999975433
No 22
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=95.31 E-value=0.014 Score=45.58 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=33.5
Q ss_pred hhhhccccHHHHHHHHHhhccCCCCchHHHHHHHhh
Q 006883 67 IESFGQMGVKQLREQADLRGLSKAGTKKELLERLCN 102 (627)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (627)
..++..|+|.+|++.+..|+++..|+|.++++||.+
T Consensus 7 ~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~ 42 (55)
T 2do1_A 7 GVELHKLKLAELKQECLARGLETKGIKQDLIHRLQA 42 (55)
T ss_dssp CCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHH
T ss_pred ccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 457889999999999999999999999999999964
No 23
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=95.23 E-value=0.014 Score=48.27 Aligned_cols=38 Identities=37% Similarity=0.525 Sum_probs=34.8
Q ss_pred chhhhccccHHHHHHHHHhhccCCCCchHHHHHHHhhc
Q 006883 66 SIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNH 103 (627)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (627)
...++..|+|.+|++.+..|+++..|+|.++++||.+.
T Consensus 22 l~~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~ 59 (75)
T 2kvu_A 22 LPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAY 59 (75)
T ss_dssp CCTTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred chHHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 45589999999999999999999999999999999754
No 24
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=89.52 E-value=0.28 Score=43.69 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=33.8
Q ss_pred chhhhccccHHHHHHHHHhhccCCCCchHHHHHHHhh
Q 006883 66 SIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCN 102 (627)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (627)
.+..+..|++.+|++.+.+++++..|+|.++++||.+
T Consensus 33 ~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~ 69 (114)
T 2rnn_A 33 TITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRN 69 (114)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHH
Confidence 4556889999999999999999999999999999964
No 25
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=88.35 E-value=0.46 Score=48.77 Aligned_cols=36 Identities=33% Similarity=0.527 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006883 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (627)
.|++.|||+.|+..||+|.|.|.+|-+||+....+.
T Consensus 28 ~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~~ 63 (299)
T 1zbh_A 28 RMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 63 (299)
T ss_dssp SCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999988654
No 26
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=87.75 E-value=0.39 Score=44.88 Aligned_cols=42 Identities=33% Similarity=0.440 Sum_probs=37.0
Q ss_pred cchhhhccccHHHHHHHHHhhccCCCCchHHHHHHHhhcccC
Q 006883 65 KSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQ 106 (627)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (627)
++-..|..|+|.+|++.+.+++++..|+|.++++||.+..+.
T Consensus 56 ~~~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~ 97 (151)
T 1jjr_A 56 ISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD 97 (151)
T ss_dssp HHHTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC
T ss_pred HHcCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhh
Confidence 445778899999999999999999999999999999876543
No 27
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=84.64 E-value=1.4 Score=38.13 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcccc
Q 006883 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKS 43 (627)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~ 43 (627)
.++-||++-|.+.||+-.|-|.+||.|+-+-|..++...
T Consensus 20 frikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~ 58 (110)
T 2rno_A 20 FRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQR 58 (110)
T ss_dssp SCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTT
T ss_pred hhHHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcc
Confidence 578999999999999999999999999999887766533
No 28
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.70 E-value=6.2 Score=29.94 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006883 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (627)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (627)
+.-.||.+.|..-|-+.-|...+||+||+......
T Consensus 11 W~~~ELQaKLaE~GAPi~g~REElvdRLk~Y~~Qt 45 (58)
T 2do5_A 11 WAAQELQAKLAEIGAPIQGNREELVERLQSYTRQT 45 (58)
T ss_dssp SCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCcccccHHHHHHHHHHHhhcc
Confidence 45689999999999999999999999999986543
No 29
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=67.51 E-value=5.1 Score=31.99 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=31.4
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q 006883 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEE 38 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~ 38 (627)
-+||.||.--|..-|-+-+|-|.+|+.|--.-+..
T Consensus 13 sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~ 47 (65)
T 1v66_A 13 SLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKA 47 (65)
T ss_dssp TCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHc
Confidence 57999999999999999999999999997776643
No 30
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=59.29 E-value=3.9 Score=39.37 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.3
Q ss_pred eEEeecCCCcCHHHHhhhCCCC
Q 006883 473 MLLWHGSRLTNWTGILSQGLRI 494 (627)
Q Consensus 473 ~LLwHGSr~~N~~gILs~GLri 494 (627)
..|+|||...+|-+|+.+||+-
T Consensus 92 ~~lyHGT~~~~~~~I~~~GL~~ 113 (186)
T 1wfx_A 92 PILYHGTTEEALPLIMERGIMR 113 (186)
T ss_dssp SEEEECCBGGGHHHHHHHCBCC
T ss_pred CEEEEeCCHHHHHHHHHhCCCC
Confidence 5899999999999999999864
No 31
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=57.30 E-value=2.2 Score=44.89 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (627)
..|++.|||+.|...+|++.|.+.+|-.||+......
T Consensus 77 ~~~~~~~l~~~l~~~~l~~~G~~~vl~~~l~~~y~~~ 113 (349)
T 1zbu_A 77 NRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 113 (349)
T ss_dssp -------------------------------------
T ss_pred ccCCHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhc
Confidence 3688999999999999999999999999999877543
No 32
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=57.20 E-value=11 Score=37.82 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHHhcccc
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGT-KAILVQRLEEAVEEENKKS 43 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~-k~~l~~rl~~~~~~~~~~~ 43 (627)
..|.+.|||..+..||+.+.|+ ..+|.+.|+.-|+=.-...
T Consensus 145 ~sLs~~ELr~AC~~RGm~~~gls~e~LR~~L~~WL~Lsl~~~ 186 (249)
T 3skq_A 145 ESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLELRLRQK 186 (249)
T ss_dssp GGSCHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHccCC
Confidence 3588999999999999999999 6789999999887655544
No 33
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=55.22 E-value=8.9 Score=38.69 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 006883 3 SNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEA 35 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~ 35 (627)
++||+..|+.-...-|+.+.|.|++|++||.+.
T Consensus 2 ~~lk~~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 2 ATVKLSFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp -CCCHHHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 469999999999999999999999999999875
No 34
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=52.77 E-value=3.1 Score=46.91 Aligned_cols=40 Identities=35% Similarity=0.443 Sum_probs=0.0
Q ss_pred ccchhhhccccHHHHHHHHHhhccCCCCchHHHHHHHhhc
Q 006883 64 VKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNH 103 (627)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (627)
..+...|..+++.+|++.+..+++++.|+|.++++|+.+.
T Consensus 567 ~~~~g~l~~~tv~~Lk~~l~~~~~~~~~kK~~li~~i~~~ 606 (609)
T 1jey_A 567 HISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 606 (609)
T ss_dssp ----------------------------------------
T ss_pred HHHCCCchhccHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 4455778899999999999999999999999999999654
No 35
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.26 E-value=26 Score=31.20 Aligned_cols=28 Identities=36% Similarity=0.355 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHcCCCCCCC--HHHHHHH
Q 006883 4 NLKVDQLRAKLAQRGLSTAGT--KAILVQR 31 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~--k~~l~~r 31 (627)
+|+|.+||.-|..+++++.|. |.+||+=
T Consensus 78 ~lkvkdL~~yL~~~~I~~~~c~EKedLv~l 107 (120)
T 1y02_A 78 KMKVKDLRDYLSLHDISTEMCREKEELVLL 107 (120)
T ss_dssp TSCHHHHHHHHHHTTCCCTTCCSHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcccceeHHHHHHH
Confidence 689999999999999999999 9999983
No 36
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=37.94 E-value=76 Score=31.75 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=61.2
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccccCCCcccCCCCCCCCCCCCccccchhhhccccHHHHHHHHH
Q 006883 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNGSQKVKSIESFGQMGVKQLREQAD 83 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (627)
.|....|++-++--||.+-|...-|.-||...+..=.. +++.|.-+-+.+|++.+|+.+|.
T Consensus 97 nLsr~qLvaLck~m~L~p~gt~~~LR~rLr~rl~~I~~-------------------DDr~I~~EGV~sLs~~ELr~AC~ 157 (249)
T 3skq_A 97 NLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMN-------------------DDKTIDYEGVESLSQEELYQACV 157 (249)
T ss_dssp HSCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-------------------HHHHHHHHCGGGSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH-------------------hhHHHHHhCcccCCHHHHHHHHH
Confidence 35667899999999999999999999999887754222 23456666688999999999999
Q ss_pred hhccCCCCchH-HHHHHHhh
Q 006883 84 LRGLSKAGTKK-ELLERLCN 102 (627)
Q Consensus 84 ~~~~~~~~~~~-~~~~~~~~ 102 (627)
.||+-+.|... +..+.|..
T Consensus 158 ~RGm~~~gls~e~LR~~L~~ 177 (249)
T 3skq_A 158 SRGMKAYGVSKEDLVDNLKV 177 (249)
T ss_dssp HTTCCCTTCCHHHHHHHHHH
T ss_pred HcCCCCCCCCHHHHHHHHHH
Confidence 99997776544 45555533
No 37
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=32.61 E-value=19 Score=32.62 Aligned_cols=19 Identities=37% Similarity=0.747 Sum_probs=16.8
Q ss_pred CCCcHHHHHHHHHHcCCCC
Q 006883 3 SNLKVDQLRAKLAQRGLST 21 (627)
Q Consensus 3 ~~~~v~~l~~el~~r~l~~ 21 (627)
.+|+|.|||+.|.+||+.-
T Consensus 90 ~~lTV~ELKa~Lde~gIe~ 108 (131)
T 2out_A 90 NTFTVEQLKAQLTERGITF 108 (131)
T ss_dssp TTCCSHHHHHHHHHHTCCC
T ss_pred ccccHHHHHHHHHHcCCcc
Confidence 4689999999999999864
No 38
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=30.47 E-value=68 Score=32.23 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHHc---CH-HHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHHHHhc
Q 006883 279 LEPCVAKFISLIC---NI-SMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRIADVI 334 (627)
Q Consensus 279 L~~~Vq~li~lI~---n~-~~~~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI~~~l 334 (627)
|...+..++..+| ++ ..+|.+|..+|++. -+.||..|+.++..+-.++|.++.+-|
T Consensus 223 l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~~ 284 (286)
T 2r91_A 223 LQFLLDEIVESARHIGYAAAVYELVEIFQGYEAGEPRGPVYPLDPEEKAWLRAAVAKAKSQL 284 (286)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCSCCCBCCTTSCCCCHHHHHHHHHHTHHHHHTC
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4455666666654 36 77899999999865 488999999998887777777776543
No 39
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=28.02 E-value=53 Score=26.17 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHhhccCCCCchHHHHHHH
Q 006883 72 QMGVKQLREQADLRGLSKAGTKKELLERL 100 (627)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (627)
+.-|.+|+.+....+.+..|.|.|+..|.
T Consensus 13 sfRVsELq~LLg~~gr~KsGrK~eL~~Ra 41 (65)
T 1v66_A 13 SLRVSELQVLLGYAGRNKHGRKHELLTKA 41 (65)
T ss_dssp TCCHHHHHHHHHTTCCCCCSCHHHHHHHH
T ss_pred HHhHHHHHHHHHHcCCCCcCcHHHHHHHH
Confidence 44588999999999999999999999998
No 40
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=26.56 E-value=94 Score=31.33 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=41.0
Q ss_pred CCcHHHHHHHHHHc---C-HHHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHHH
Q 006883 278 KLEPCVAKFISLIC---N-ISMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRIA 331 (627)
Q Consensus 278 kL~~~Vq~li~lI~---n-~~~~~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI~ 331 (627)
+|...+..++..+| + +..+|.+|..+|++. -+.||..|+.++..+-.++|.++.
T Consensus 223 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 282 (293)
T 1w3i_A 223 KLQFLHDEVIEASRIFGSLSSNYVLTKYFQGYDLGYPRPPIFPLDDEEERQLIKKVEGIR 282 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCBCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35566777777775 4 667899999999865 378999999988777667776654
No 41
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=25.64 E-value=1e+02 Score=30.96 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHc---C-HHHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHHH
Q 006883 278 KLEPCVAKFISLIC---N-ISMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRIA 331 (627)
Q Consensus 278 kL~~~Vq~li~lI~---n-~~~~~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI~ 331 (627)
+|...+..++..+| + +..+|.+|..+|++. -+.||..|+.++..+-.++|.++.
T Consensus 221 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 280 (288)
T 2nuw_A 221 RLQELINRLADILRKYGSISAIYVLVNEFQGYDVGYPRPPIFPLTDEEALSLKREIEPLK 280 (288)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCCBCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35566777777775 4 567899999899865 488999999988776666666654
No 42
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=24.45 E-value=81 Score=29.46 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhccc
Q 006883 5 LKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKK 42 (627)
Q Consensus 5 ~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~~ 42 (627)
|++.+||+-|+.-|.+..|-+..|++|+...+-=.+-.
T Consensus 42 ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm~FGal~ 79 (160)
T 2riq_A 42 CSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALL 79 (160)
T ss_dssp CCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHCEEC
T ss_pred CCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 78999999999999999999999999998888655443
No 43
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=23.45 E-value=1.2e+02 Score=30.45 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=42.6
Q ss_pred CCCcHHHHHHHHHHc---CHHHHHHHHHH-hc-cCC--CCCCCCCCcHHHHHHHHHHHHHHH
Q 006883 277 TKLEPCVAKFISLIC---NISMMKQLMME-IG-YNA--NKLPLGKLSKSTILKGYDVLKRIA 331 (627)
Q Consensus 277 skL~~~Vq~li~lI~---n~~~~~~~m~e-~~-~D~--~kmPLGkLSk~qI~~g~~vL~eI~ 331 (627)
-.|...+..|++.+| ++..+|.+|.. +| ++. -+.||..||.++..+-.++|.++.
T Consensus 228 ~~l~~~l~~l~~~~~~~~~~~~~K~al~~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 289 (294)
T 3b4u_A 228 GKDDPRIVDLVVELLKFPVTPAVKVLVSHTTGETIWSDVRAPLVAISPEDRRQIEGAFDALF 289 (294)
T ss_dssp CCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHCCGGGGCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHhCCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 457778888888776 46778999998 89 654 489999999998877667776654
No 44
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.43 E-value=74 Score=32.34 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC--CCCCCCCcHHHHHHHHHHHHHH
Q 006883 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNAN--KLPLGKLSKSTILKGYDVLKRI 330 (627)
Q Consensus 279 L~~~Vq~li~lI~---n~~~~~~~m~e~~~D~~--kmPLGkLSk~qI~~g~~vL~eI 330 (627)
|...+..|++.++ ++..+|.+|..+|++.. +.||..|+.++..+-.++|.++
T Consensus 244 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 300 (304)
T 3l21_A 244 INIAVAPLCNAMSRLGGVTLSKAGLRLQGIDVGDPRLPQVAATPEQIDALAADMRAA 300 (304)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCCCCCCcCCCCCCCCHHHHHHHHHHHHHc
Confidence 4445555666555 56778999999999754 7899999999887777777654
No 45
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=22.56 E-value=83 Score=31.92 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCCC---CCCCCCCcHHHHHHHHHHHHHHH
Q 006883 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNAN---KLPLGKLSKSTILKGYDVLKRIA 331 (627)
Q Consensus 279 L~~~Vq~li~lI~---n~~~~~~~m~e~~~D~~---kmPLGkLSk~qI~~g~~vL~eI~ 331 (627)
|...+..++..+| ++..+|.+|..+|++.. +.||..||.++..+-.++|.++.
T Consensus 242 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~~R~Pl~~l~~~~~~~l~~~l~~~~ 300 (303)
T 2wkj_A 242 LQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGPVDEKYLPELKALAQQLM 300 (303)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCSSCCCCTTSCCCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4556667777665 46778999998998654 88999999888776666666543
No 46
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=22.39 E-value=1e+02 Score=30.93 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHH
Q 006883 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRI 330 (627)
Q Consensus 279 L~~~Vq~li~lI~---n~~~~~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI 330 (627)
|...+..+++.+| ++..+|.+|..+|++. -+.||..|+.++..+-.++|.++
T Consensus 230 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 286 (289)
T 2yxg_A 230 IHYKLFPLMKAMFIETNPIPVKTALNMMGRPAGELRLPLCEMSEEHKKILENVLKDL 286 (289)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHTTCSCCCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5556777777776 5677899999899864 48899999998877666666654
No 47
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=22.27 E-value=1.1e+02 Score=30.98 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHHc---CHHHHHHHHHHhccCC--CCCCCCCCcHHHHHHHHHHHHHH
Q 006883 279 LEPCVAKFISLIC---NISMMKQLMMEIGYNA--NKLPLGKLSKSTILKGYDVLKRI 330 (627)
Q Consensus 279 L~~~Vq~li~lI~---n~~~~~~~m~e~~~D~--~kmPLGkLSk~qI~~g~~vL~eI 330 (627)
|...+..+++.+| ++..+|.+|..+|++. -+.||..||.++..+-.++|.++
T Consensus 231 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 287 (297)
T 2rfg_A 231 IHDLLAPLHEALFREPSPAGAKYAASLLGLCNEECRLPIVPLSEQTKSDIKNIINEL 287 (297)
T ss_dssp HHHHHHHHHHHHHSSSTTHHHHHHHHHTTSSCCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Confidence 4556677777765 5677899999899864 48899999998877666666653
No 48
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=22.21 E-value=1.1e+02 Score=31.24 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=40.2
Q ss_pred CCcHHHHHHHHHHcC---HHHHHHHHHHhccCCC--CCCCCCCcHHHHHHHHHHHHHH
Q 006883 278 KLEPCVAKFISLICN---ISMMKQLMMEIGYNAN--KLPLGKLSKSTILKGYDVLKRI 330 (627)
Q Consensus 278 kL~~~Vq~li~lI~n---~~~~~~~m~e~~~D~~--kmPLGkLSk~qI~~g~~vL~eI 330 (627)
.|...+..|++.++. +..+|.+|..+|++.. +.||..||.++..+-.++|.++
T Consensus 255 ~l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~ 312 (315)
T 3na8_A 255 ALFYRQLPLLDFILRRGLPTTIKAGLGLSGLEVGAPRLPVQALDTEGCRYLQGLLEEL 312 (315)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHh
Confidence 355566677777653 5678999999999754 7899999999887777777654
No 49
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=22.04 E-value=79 Score=32.05 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHcC---HHHHHHHHHHhccCCC--CCCCCCCcHHHHHHHHHHHHHHH
Q 006883 279 LEPCVAKFISLICN---ISMMKQLMMEIGYNAN--KLPLGKLSKSTILKGYDVLKRIA 331 (627)
Q Consensus 279 L~~~Vq~li~lI~n---~~~~~~~m~e~~~D~~--kmPLGkLSk~qI~~g~~vL~eI~ 331 (627)
|...+..|++.++. +..+|.+|..+|++.. +.||..||.++..+-.++|.++.
T Consensus 235 l~~~l~~l~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 292 (300)
T 3eb2_A 235 LQRKLWRVNEAFAKFNLAACIKAGLALQGYDVGDPIPPQAALTAEERKAVEKVLAEIA 292 (300)
T ss_dssp HHHHHTHHHHHHTTSCHHHHHHHHHHHTTCCCCCCCTTSCCCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45566677777764 5678999999999754 88999999998877767766654
No 50
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.33 E-value=95 Score=31.63 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCcHHHHHHHHHHc----CHHHHHHHHHHhcc-CC--CCCCCCCCcHHHHHHHHHHHHHHH
Q 006883 278 KLEPCVAKFISLIC----NISMMKQLMMEIGY-NA--NKLPLGKLSKSTILKGYDVLKRIA 331 (627)
Q Consensus 278 kL~~~Vq~li~lI~----n~~~~~~~m~e~~~-D~--~kmPLGkLSk~qI~~g~~vL~eI~ 331 (627)
.|...+..|++.++ ++..+|.+|..+|+ +. -+.||..||.++..+-.++|.++.
T Consensus 243 ~l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~ 303 (313)
T 3dz1_A 243 NLFDAHLPLIRYEHQQGVGLSVRKYVLKKRGLLSSSAQRKPGASLTDTAREEVDYLLSRLA 303 (313)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHTTSCSCCCCCSSCCCCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 35556777788776 35678999999998 43 589999999998877777776654
No 51
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=20.79 E-value=47 Score=30.01 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=32.4
Q ss_pred CCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Q 006883 4 NLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEE 39 (627)
Q Consensus 4 ~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~ 39 (627)
|+.+.+|++-+.=-||+..|.|.+|++||-+-|.+.
T Consensus 74 K~~~~~L~~~c~iL~l~~~g~keelv~ril~FL~~P 109 (131)
T 2jx3_A 74 KFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHP 109 (131)
T ss_dssp HHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSC
T ss_pred ccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCc
Confidence 678889999999999999999999999999988544
No 52
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=20.10 E-value=81 Score=28.26 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=0.0
Q ss_pred cchhhhccccHHHHHHHHHhhccCCCC--chHHHHHHH
Q 006883 65 KSIESFGQMGVKQLREQADLRGLSKAG--TKKELLERL 100 (627)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 100 (627)
..+++|+.|+..+|.+++...++.... +|.+++.++
T Consensus 1 ~~~~eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~I 38 (130)
T 1a62_A 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAI 38 (130)
T ss_dssp CBHHHHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHH
T ss_pred CChHHHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHH
Done!