Query 006885
Match_columns 627
No_of_seqs 291 out of 660
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 15:53:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 4.7E-69 1E-73 551.4 11.5 283 139-439 2-285 (286)
2 TIGR03843 conserved hypothetic 100.0 1.3E-46 2.9E-51 376.6 15.4 190 153-416 11-230 (253)
3 cd01807 GDX_N ubiquitin-like d 99.6 5.2E-16 1.1E-20 129.5 8.1 67 28-94 1-71 (74)
4 KOG0005 Ubiquitin-like protein 99.6 1.7E-16 3.8E-21 129.4 4.4 66 28-93 1-70 (70)
5 cd01793 Fubi Fubi ubiquitin-li 99.6 1.4E-15 3E-20 127.1 7.8 64 28-93 1-68 (74)
6 cd01802 AN1_N ubiquitin-like d 99.6 2.1E-15 4.6E-20 135.0 8.9 74 21-94 21-98 (103)
7 PTZ00044 ubiquitin; Provisiona 99.6 3.5E-15 7.5E-20 124.3 8.2 67 28-94 1-71 (76)
8 cd01797 NIRF_N amino-terminal 99.6 3.2E-15 6.9E-20 127.3 7.8 67 28-94 1-73 (78)
9 cd01798 parkin_N amino-termina 99.6 3.4E-15 7.4E-20 123.2 7.3 65 30-94 1-69 (70)
10 KOG0003 Ubiquitin/60s ribosoma 99.6 7.9E-16 1.7E-20 138.4 1.0 67 28-94 1-71 (128)
11 cd01810 ISG15_repeat2 ISG15 ub 99.5 1.3E-14 2.9E-19 121.2 7.4 65 30-94 1-69 (74)
12 KOG0004 Ubiquitin/40S ribosoma 99.5 2.3E-15 4.9E-20 142.9 3.0 67 28-94 1-71 (156)
13 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 2E-14 4.4E-19 121.3 7.9 66 28-93 2-71 (73)
14 cd01794 DC_UbP_C dendritic cel 99.5 3.5E-14 7.5E-19 118.7 7.2 64 30-93 1-68 (70)
15 cd01806 Nedd8 Nebb8-like ubiq 99.5 7E-14 1.5E-18 115.4 8.7 67 28-94 1-71 (76)
16 cd01805 RAD23_N Ubiquitin-like 99.5 7.6E-14 1.6E-18 116.3 8.7 67 28-94 1-73 (77)
17 cd01809 Scythe_N Ubiquitin-lik 99.5 7.9E-14 1.7E-18 114.0 8.3 67 28-94 1-71 (72)
18 cd01803 Ubiquitin Ubiquitin. U 99.5 6.9E-14 1.5E-18 115.5 8.0 67 28-94 1-71 (76)
19 cd01804 midnolin_N Ubiquitin-l 99.5 1.1E-13 2.4E-18 117.4 7.9 67 27-94 1-71 (78)
20 cd01796 DDI1_N DNA damage indu 99.4 1.7E-13 3.7E-18 114.3 7.2 64 30-93 1-70 (71)
21 cd01808 hPLIC_N Ubiquitin-like 99.4 2.9E-13 6.4E-18 112.1 7.8 66 28-94 1-70 (71)
22 cd01792 ISG15_repeat1 ISG15 ub 99.4 2.9E-13 6.2E-18 115.1 7.1 68 27-94 2-75 (80)
23 cd01790 Herp_N Homocysteine-re 99.4 1.8E-12 3.9E-17 111.7 7.7 67 28-94 2-78 (79)
24 cd01763 Sumo Small ubiquitin-r 99.3 9.7E-12 2.1E-16 107.6 9.7 74 21-94 5-82 (87)
25 PF00240 ubiquitin: Ubiquitin 99.3 7.3E-12 1.6E-16 102.1 7.3 62 33-94 1-66 (69)
26 cd01812 BAG1_N Ubiquitin-like 99.3 7.7E-12 1.7E-16 102.4 7.3 65 28-93 1-69 (71)
27 cd01800 SF3a120_C Ubiquitin-li 99.2 3.6E-11 7.9E-16 101.3 6.7 60 35-94 5-68 (76)
28 TIGR00601 rad23 UV excision re 99.1 1.6E-10 3.5E-15 124.4 9.6 67 28-94 1-74 (378)
29 smart00213 UBQ Ubiquitin homol 99.1 2.7E-10 5.8E-15 90.3 7.4 60 28-88 1-64 (64)
30 PF00454 PI3_PI4_kinase: Phosp 99.0 1.6E-12 3.5E-17 128.5 -9.3 156 205-377 28-204 (235)
31 cd01813 UBP_N UBP ubiquitin pr 99.0 5.5E-10 1.2E-14 94.5 7.4 65 28-93 1-72 (74)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.0 2.1E-10 4.5E-15 98.1 4.6 49 46-94 19-74 (75)
33 cd01799 Hoil1_N Ubiquitin-like 99.0 4.2E-10 9.2E-15 95.6 6.3 63 30-93 5-73 (75)
34 KOG0010 Ubiquitin-like protein 99.0 1.1E-09 2.4E-14 119.8 7.4 78 26-104 14-95 (493)
35 KOG0001 Ubiquitin and ubiquiti 98.8 2.2E-08 4.7E-13 79.1 8.1 66 29-94 1-70 (75)
36 cd01769 UBL Ubiquitin-like dom 98.8 1.8E-08 3.9E-13 80.7 7.2 62 32-93 2-67 (69)
37 PF11976 Rad60-SLD: Ubiquitin- 98.7 6.9E-08 1.5E-12 79.7 8.4 66 28-93 1-71 (72)
38 cd01814 NTGP5 Ubiquitin-like N 98.6 3.4E-08 7.4E-13 90.4 5.0 68 26-93 3-88 (113)
39 KOG0011 Nucleotide excision re 98.5 3E-07 6.5E-12 97.0 7.2 65 28-92 1-71 (340)
40 cd01795 USP48_C USP ubiquitin- 98.4 3.8E-07 8.2E-12 82.1 6.1 56 38-93 15-75 (107)
41 PLN02560 enoyl-CoA reductase 98.2 2.4E-06 5.2E-11 90.3 7.8 66 28-93 1-81 (308)
42 cd01789 Alp11_N Ubiquitin-like 98.2 6.7E-06 1.5E-10 71.2 8.5 66 29-94 3-80 (84)
43 KOG4248 Ubiquitin-like protein 98.2 2E-06 4.2E-11 101.0 6.0 64 30-94 5-72 (1143)
44 KOG3829 Uncharacterized conser 97.8 8.3E-05 1.8E-09 80.8 9.1 173 136-334 151-389 (486)
45 cd00196 UBQ Ubiquitin-like pro 97.7 0.00019 4.1E-09 52.9 7.2 61 33-93 3-67 (69)
46 PF14560 Ubiquitin_2: Ubiquiti 97.4 0.00062 1.3E-08 58.8 8.1 66 29-94 3-82 (87)
47 cd01801 Tsc13_N Ubiquitin-like 97.2 0.00091 2E-08 56.7 6.3 64 29-92 2-74 (77)
48 PF13881 Rad60-SLD_2: Ubiquiti 97.2 0.0019 4.1E-08 59.3 8.6 67 27-93 2-86 (111)
49 cd01788 ElonginB Ubiquitin-lik 97.1 0.0014 3E-08 60.7 6.9 55 39-93 13-78 (119)
50 PF11543 UN_NPL4: Nuclear pore 96.8 0.0016 3.4E-08 56.5 4.4 67 26-93 3-78 (80)
51 KOG0006 E3 ubiquitin-protein l 96.8 0.0041 8.9E-08 66.2 7.9 67 28-94 1-74 (446)
52 PF07804 HipA_C: HipA-like C-t 96.3 0.0013 2.8E-08 55.9 0.8 38 284-326 40-77 (79)
53 cd01811 OASL_repeat1 2'-5' oli 96.0 0.024 5.2E-07 49.3 6.8 65 28-93 1-74 (80)
54 PF06702 DUF1193: Protein of u 95.7 0.016 3.4E-07 59.2 5.3 107 284-415 89-198 (221)
55 KOG1872 Ubiquitin-specific pro 95.2 0.051 1.1E-06 60.6 7.7 65 29-94 5-74 (473)
56 cd05168 PI4Kc_III_beta Phospho 92.5 0.15 3.3E-06 54.1 4.7 40 286-333 132-171 (293)
57 PF13019 Telomere_Sde2: Telome 92.5 0.26 5.7E-06 48.5 5.9 51 28-78 1-57 (162)
58 PF10302 DUF2407: DUF2407 ubiq 91.9 0.37 8E-06 43.5 5.7 53 29-81 2-59 (97)
59 cd00893 PI4Kc_III Phosphoinosi 91.7 0.3 6.4E-06 51.9 5.6 41 286-334 130-170 (289)
60 cd00895 PI3Kc_C2_beta Phosphoi 91.1 0.3 6.5E-06 53.3 5.1 67 285-362 193-259 (354)
61 PF11470 TUG-UBL1: GLUT4 regul 90.9 0.87 1.9E-05 38.5 6.6 59 34-92 3-65 (65)
62 KOG1769 Ubiquitin-like protein 90.8 1.5 3.2E-05 40.2 8.3 70 25-94 18-91 (99)
63 KOG4495 RNA polymerase II tran 88.8 0.86 1.9E-05 41.6 5.2 55 38-92 12-79 (110)
64 cd05167 PI4Kc_III_alpha Phosph 87.5 0.29 6.3E-06 52.5 1.8 40 286-333 151-190 (311)
65 KOG0903 Phosphatidylinositol 4 87.5 0.69 1.5E-05 54.6 4.7 116 285-417 685-809 (847)
66 cd05177 PI3Kc_C2_gamma Phospho 86.7 0.53 1.2E-05 51.4 3.2 41 285-333 193-233 (354)
67 KOG4583 Membrane-associated ER 86.6 0.2 4.4E-06 54.1 -0.0 68 27-94 9-86 (391)
68 cd05166 PI3Kc_II Phosphoinosit 83.2 1.6 3.6E-05 47.6 5.0 41 285-333 192-232 (353)
69 KOG0013 Uncharacterized conser 82.1 1.4 3E-05 45.2 3.6 68 23-90 139-213 (231)
70 cd00891 PI3Kc Phosphoinositide 81.7 2.3 4.9E-05 46.5 5.3 41 285-333 193-233 (352)
71 cd05176 PI3Kc_C2_alpha Phospho 81.6 0.76 1.6E-05 50.2 1.7 41 285-333 192-232 (353)
72 cd05174 PI3Kc_IA_delta Phospho 81.5 0.67 1.4E-05 50.8 1.2 40 286-333 199-238 (361)
73 cd00894 PI3Kc_IB_gamma Phospho 81.3 0.7 1.5E-05 50.7 1.3 40 286-333 203-242 (365)
74 cd05165 PI3Kc_I Phosphoinositi 80.5 0.63 1.4E-05 51.0 0.6 40 286-333 203-242 (366)
75 cd05175 PI3Kc_IA_alpha Phospho 79.9 0.75 1.6E-05 50.5 1.0 40 286-333 202-241 (366)
76 cd05173 PI3Kc_IA_beta Phosphoi 79.8 0.76 1.6E-05 50.4 0.9 40 286-333 199-238 (362)
77 KOG3493 Ubiquitin-like protein 78.7 1 2.2E-05 38.5 1.1 54 29-82 3-56 (73)
78 cd06409 PB1_MUG70 The MUG70 pr 78.4 6 0.00013 35.3 5.9 37 30-66 3-39 (86)
79 cd00896 PI3Kc_III Phosphoinosi 77.9 0.87 1.9E-05 49.6 0.7 41 285-333 192-232 (350)
80 PRK09775 putative DNA-binding 77.1 1.3 2.9E-05 49.6 1.8 41 284-328 327-368 (442)
81 PF00789 UBX: UBX domain; Int 76.3 21 0.00045 30.2 8.5 68 25-92 4-80 (82)
82 PTZ00303 phosphatidylinositol 75.6 1.3 2.8E-05 52.6 1.3 41 286-334 1136-1176(1374)
83 smart00146 PI3Kc Phosphoinosit 72.3 1.8 4E-05 43.0 1.3 41 285-333 91-131 (202)
84 cd05169 PIKKc_TOR TOR (Target 70.6 2.3 5.1E-05 44.4 1.7 42 285-333 171-212 (280)
85 PF08817 YukD: WXG100 protein 70.1 10 0.00022 32.3 5.2 65 28-92 3-78 (79)
86 cd05124 AFK Actin-Fragmin Kina 69.5 6 0.00013 41.3 4.3 30 284-313 121-160 (238)
87 PF14453 ThiS-like: ThiS-like 67.4 17 0.00037 30.3 5.7 55 28-94 1-55 (57)
88 KOG0906 Phosphatidylinositol 3 67.1 4.9 0.00011 47.2 3.4 45 285-340 684-728 (843)
89 COG5227 SMT3 Ubiquitin-like pr 65.5 27 0.00059 31.9 7.0 87 8-94 4-95 (103)
90 KOG0902 Phosphatidylinositol 4 64.6 2.9 6.3E-05 52.6 1.0 42 285-334 1642-1683(1803)
91 KOG0904 Phosphatidylinositol 3 64.1 5.2 0.00011 48.4 2.9 36 291-334 919-954 (1076)
92 smart00166 UBX Domain present 64.0 51 0.0011 28.0 8.3 54 26-79 3-58 (80)
93 cd05172 PIKKc_DNA-PK DNA-depen 60.2 6.1 0.00013 40.7 2.3 43 285-334 126-168 (235)
94 cd05171 PIKKc_ATM Ataxia telan 59.9 4.8 0.0001 42.3 1.5 42 285-333 171-212 (279)
95 cd00892 PIKKc_ATR ATR (Ataxia 59.7 4.5 9.8E-05 41.6 1.3 43 285-334 129-171 (237)
96 PF15044 CLU_N: Mitochondrial 58.4 12 0.00027 32.2 3.6 51 44-94 1-57 (76)
97 smart00666 PB1 PB1 domain. Pho 58.0 41 0.0009 28.1 6.6 45 29-74 3-47 (81)
98 cd06406 PB1_P67 A PB1 domain i 57.1 37 0.00081 30.1 6.3 36 39-74 12-47 (80)
99 KOG1235 Predicted unusual prot 56.5 8 0.00017 44.7 2.7 39 292-334 317-355 (538)
100 smart00295 B41 Band 4.1 homolo 56.2 29 0.00063 33.2 6.1 38 27-64 3-40 (207)
101 cd00142 PI3Kc_like Phosphoinos 54.4 5.9 0.00013 40.0 1.1 42 285-333 118-159 (219)
102 KOG0905 Phosphoinositide 3-kin 54.1 9.6 0.00021 47.6 2.9 36 290-333 1191-1226(1639)
103 cd01787 GRB7_RA RA (RAS-associ 54.0 62 0.0013 29.1 7.2 53 29-81 4-63 (85)
104 PF09379 FERM_N: FERM N-termin 53.2 21 0.00045 29.7 4.1 41 32-72 1-42 (80)
105 cd05164 PIKKc Phosphoinositide 50.3 7.6 0.00016 39.6 1.1 43 285-334 121-163 (222)
106 cd01772 SAKS1_UBX SAKS1-like U 50.0 1.1E+02 0.0024 26.3 8.0 64 28-92 5-77 (79)
107 COG0661 AarF Predicted unusual 49.5 27 0.0006 40.2 5.5 31 295-333 284-314 (517)
108 cd05170 PIKKc_SMG1 Suppressor 49.0 8.7 0.00019 41.0 1.4 42 285-333 199-240 (307)
109 PRK08364 sulfur carrier protei 48.8 94 0.002 26.1 7.3 59 28-94 5-65 (70)
110 KOG3206 Alpha-tubulin folding 46.7 47 0.001 34.5 6.0 54 42-95 17-81 (234)
111 smart00455 RBD Raf-like Ras-bi 46.1 65 0.0014 27.4 5.9 50 31-80 3-54 (70)
112 cd00754 MoaD Ubiquitin domain 46.1 73 0.0016 26.4 6.3 56 37-93 14-74 (80)
113 cd01767 UBX UBX (ubiquitin reg 44.9 1.5E+02 0.0033 24.8 8.1 51 28-79 3-55 (77)
114 KOG4250 TANK binding protein k 44.0 26 0.00056 41.8 4.3 42 34-75 321-362 (732)
115 cd01774 Faf1_like2_UBX Faf1 ik 43.9 1.8E+02 0.0038 25.6 8.5 52 26-78 3-56 (85)
116 cd01770 p47_UBX p47-like ubiqu 39.8 1.5E+02 0.0034 25.6 7.4 53 28-80 5-60 (79)
117 PHA02537 M terminase endonucle 38.8 19 0.00042 37.4 2.0 43 323-365 107-158 (230)
118 cd01773 Faf1_like1_UBX Faf1 ik 38.0 1.2E+02 0.0027 26.9 6.6 49 28-77 6-56 (82)
119 cd05992 PB1 The PB1 domain is 37.0 83 0.0018 26.1 5.2 44 30-74 3-47 (81)
120 PLN02799 Molybdopterin synthas 35.2 1E+02 0.0022 26.1 5.6 65 28-93 2-76 (82)
121 PF14533 USP7_C2: Ubiquitin-sp 34.8 33 0.00071 34.8 2.9 30 37-66 132-161 (213)
122 PF10446 DUF2457: Protein of u 34.7 1.3E+02 0.0028 34.4 7.6 17 565-581 181-197 (458)
123 PRK06437 hypothetical protein; 32.5 2.1E+02 0.0046 23.9 6.9 58 30-94 5-62 (67)
124 cd06407 PB1_NLP A PB1 domain i 31.4 1.2E+02 0.0026 26.7 5.4 33 32-64 3-36 (82)
125 KOG1639 Steroid reductase requ 31.3 82 0.0018 33.7 5.1 65 28-92 1-76 (297)
126 cd05163 TRRAP TRansformation/t 31.2 24 0.00052 36.8 1.3 42 285-333 144-185 (253)
127 cd01760 RBD Ubiquitin-like dom 30.9 1.2E+02 0.0027 26.1 5.3 44 30-73 2-45 (72)
128 smart00144 PI3K_rbd PI3-kinase 30.9 2.3E+02 0.005 25.8 7.4 67 27-93 17-102 (108)
129 PRK12540 RNA polymerase sigma 29.9 98 0.0021 30.0 5.2 54 373-440 105-158 (182)
130 cd01768 RA RA (Ras-associating 29.5 2.3E+02 0.005 24.0 6.8 28 37-64 12-39 (87)
131 PF09192 Act-Frag_cataly: Acti 29.3 22 0.00048 37.9 0.7 143 154-332 33-209 (275)
132 PF00564 PB1: PB1 domain; Int 29.3 1.9E+02 0.0041 24.1 6.2 44 30-74 4-48 (84)
133 cd01777 SNX27_RA Ubiquitin dom 28.7 1.2E+02 0.0025 27.6 4.9 42 29-70 3-44 (87)
134 PF14836 Ubiquitin_3: Ubiquiti 26.8 1.1E+02 0.0023 27.7 4.4 56 38-94 14-80 (88)
135 cd06410 PB1_UP2 Uncharacterize 26.8 1.9E+02 0.0042 26.2 6.1 40 32-72 17-56 (97)
136 cd06396 PB1_NBR1 The PB1 domai 25.6 1.6E+02 0.0035 26.2 5.2 45 31-81 2-49 (81)
137 PF11834 DUF3354: Domain of un 25.5 97 0.0021 26.7 3.7 52 36-93 18-69 (69)
138 KOG0608 Warts/lats-like serine 25.2 56 0.0012 39.3 2.9 41 284-337 742-784 (1034)
139 COG5032 TEL1 Phosphatidylinosi 24.1 37 0.00081 45.3 1.4 43 285-334 1932-1974(2105)
140 PF08671 SinI: Anti-repressor 24.1 1E+02 0.0022 22.7 3.1 22 393-414 7-28 (30)
141 PF14847 Ras_bdg_2: Ras-bindin 22.5 1.3E+02 0.0028 27.8 4.2 37 29-65 2-38 (105)
142 COG4106 Tam Trans-aconitate me 22.3 69 0.0015 33.8 2.7 28 582-609 211-238 (257)
143 cd06411 PB1_p51 The PB1 domain 22.1 1.7E+02 0.0036 26.1 4.5 36 38-73 7-42 (78)
144 PF02824 TGS: TGS domain; Int 22.0 1.7E+02 0.0036 23.9 4.4 59 30-93 1-59 (60)
145 PF00794 PI3K_rbd: PI3-kinase 21.9 1.8E+02 0.0039 26.0 4.9 67 27-93 16-100 (106)
146 cd06408 PB1_NoxR The PB1 domai 21.5 2.4E+02 0.0052 25.4 5.5 60 29-92 2-62 (86)
147 TIGR01682 moaD molybdopterin c 21.4 4E+02 0.0088 22.4 6.8 57 36-93 13-74 (80)
148 PF04639 Baculo_E56: Baculovir 20.8 98 0.0021 33.6 3.4 40 120-169 114-154 (305)
149 PF14451 Ub-Mut7C: Mut7-C ubiq 20.7 2.6E+02 0.0056 24.6 5.5 52 37-93 22-74 (81)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-69 Score=551.36 Aligned_cols=283 Identities=48% Similarity=0.724 Sum_probs=260.0
Q ss_pred HHHHHHHHcCCCCcccccccceEEEEEeCCCCeEEEEeCCCCCCCCCCCCCcccccccCCCCCCCccccCCcchh-hhhh
Q 006885 139 KEIVKAMKKGIDPIPVHSGLGGAYYFRNCAGENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFR-EVAA 217 (627)
Q Consensus 139 ~~v~~ai~~G~~P~~i~~GSgGsYf~~~~~Gk~vaVFKP~DEEP~a~nNPk~f~~~~~g~~g~krg~lvGe~a~R-EVAA 217 (627)
.++..|++.|+.|++++.|++|+|||++..|..+|||||+|||||++|||+|......|+||+++||++||+|+| |+||
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~aa 81 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGWIVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAAA 81 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccceeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhhh
Confidence 567899999999999999999999999999988999999999999999999977777788999999999999997 9999
Q ss_pred hhhcCCCCCCCccceEEEeeccccccCCCCCcccccccCCCCCcceeeecccCCCCCCCCCCCCCChhhhhhccccceEe
Q 006885 218 YLLDYDHFANVPCTALVKVTHEIFNINNGVNGNKIRKRKQVSKIASLQQFIPHDFDASDHGTSSFPVAAVHRIGILDIRI 297 (627)
Q Consensus 218 YLLD~~gf~~VP~T~lV~~~hp~Fn~~~~~~~~~~~~~~~p~KiGSlQ~FV~~d~~a~d~g~~~F~v~evhKIaILDiri 297 (627)
|||||++|+.||+|.+|+++|+.||+++....+.... ..|+||+|+||++ +++.|+++..|++++||||+||||||
T Consensus 82 yLlD~~~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~---~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~hkivvlD~ri 157 (286)
T KOG2381|consen 82 YLLDHPEFNDVPRTALVKITHFTFNYNAAFLSKRQGK---KSKIGSLQLFVEG-YSAADYGLRRFEAEEVHKIVVLDIRI 157 (286)
T ss_pred hccCccccCCCCceeeEEEeeecccccccceeccccc---ccchhhHHHhhcC-ccccceeEEeccccccceeEEEEEEe
Confidence 9999999999999999999999999998754332211 2799999999999 89999999999999999999999999
Q ss_pred ecCCCCCCceEEeeecCCCCCcceEEEeecCccccCCcCCCCCcccccccccCCCCCHHHHHHHhcCCcccchhHHHhhC
Q 006885 298 LNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYINQLDPFGDSGMLRLEL 377 (627)
Q Consensus 298 ~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~LD~~~D~~~Lr~~L 377 (627)
+|||||+|||||++.+..+ .-...+|||||||++|+|+||+|++||||..|||+++++|| ||+..|+++||
T Consensus 158 ~NtDRh~~N~lvk~~~~~~----~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~~~r--- 228 (286)
T KOG2381|consen 158 RNTDRHAGNWLVKKEPTLE----QAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCNLLR--- 228 (286)
T ss_pred eccCCCCCceeEEeccCcc----cccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHHHHH---
Confidence 9999999999999965322 22455699999999999999999999999999999999999 99999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHhh
Q 006885 378 PMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREFRGHAEAPSELEFICIEARRLLEE 439 (627)
Q Consensus 378 ~~lr~~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~~~~~A~~~~~~ 439 (627)
++.++|+|+++++|.|+|++++.|||+.+||.+|+|++..+ |.+|.+|.+|.+.+.+
T Consensus 229 -~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~----~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 229 -ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD----SKLEQLCVEAKASVVE 285 (286)
T ss_pred -HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh----CccHHHHHhhhhcccC
Confidence 45699999999999999999999999999999999999753 9999999999877654
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=1.3e-46 Score=376.59 Aligned_cols=190 Identities=26% Similarity=0.340 Sum_probs=163.7
Q ss_pred ccccccceEEEEEeCCC--CeEEEEeCCCCCCCCCCCCCc-ccccccCCCCCCCccccCCcchhhhhhhhhcC-CCCCCC
Q 006885 153 PVHSGLGGAYYFRNCAG--ENVAIVKPTDEEPYAPNNPKG-FVGSALGQPGLKRSVRVGETGFREVAAYLLDY-DHFANV 228 (627)
Q Consensus 153 ~i~~GSgGsYf~~~~~G--k~vaVFKP~DEEP~a~nNPk~-f~~~~~g~~g~krg~lvGe~a~REVAAYLLD~-~gf~~V 228 (627)
+|.++||+||+|....| ...|||||+.+| +|+| ||. || +|.|||||||||+ .||++|
T Consensus 11 ri~~aSN~t~~~~~~~~~~~~~~VYKPv~gE-----rPLWDFpd----------Gt----La~REvAAYlvs~~lGw~~V 71 (253)
T TIGR03843 11 RLVDASNATLLCEVTLGGVSARAVYKPVRGE-----RPLWDFPD----------GT----LAGREVAAYLVSEALGWGLV 71 (253)
T ss_pred EEccccceeEEEEEecCCeeEEEEECCcCCc-----cccccCCC----------Cc----hHHHHHHHHHHHHHhCCCcC
Confidence 68899999999996655 568999999999 9999 665 35 4899999999995 999999
Q ss_pred ccceEEEeeccccccCCCCCcccccccCCCCCcceeeecccCCCC--------CCCCCCCCCCh----------------
Q 006885 229 PCTALVKVTHEIFNINNGVNGNKIRKRKQVSKIASLQQFIPHDFD--------ASDHGTSSFPV---------------- 284 (627)
Q Consensus 229 P~T~lV~~~hp~Fn~~~~~~~~~~~~~~~p~KiGSlQ~FV~~d~~--------a~d~g~~~F~v---------------- 284 (627)
|+|+++ +| |.|+||+|+||+++.+ +++.++++|+|
T Consensus 72 PpTvlr----------DG-----------P~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v~l~h~ 130 (253)
T TIGR03843 72 PPTVLR----------DG-----------PFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVVLVHA 130 (253)
T ss_pred CCeeee----------cC-----------CCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcceeeccc
Confidence 999998 45 8899999999998754 35667788863
Q ss_pred --hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCCcCCCCCcccccccccCCCCCHHHHHHHh
Q 006885 285 --AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYIN 362 (627)
Q Consensus 285 --~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~ 362 (627)
.++|||+|||++|+|+|||+||||+.+ +| +|+||||||||| .+++|+|++|+|+++|||+++++||+
T Consensus 131 d~~~l~riaVfDi~inNaDRk~GhiL~~~---dg-----~l~~IDHGl~f~---~~~klrtvlW~wag~Pls~e~l~~i~ 199 (253)
T TIGR03843 131 DHPQLRRMAVFDALVNNADRKGGHVLPGP---DG-----RVWGVDHGVCFH---VEPKLRTVLWGWAGEPLPAELLADLA 199 (253)
T ss_pred ccHHHhhhhhheeeeecCCCCCCcEeEcC---CC-----cEEEecCceecC---CCCcccccccccccCCCCHHHHHHHH
Confidence 579999999999999999999999987 44 499999999999 78999999999999999999999999
Q ss_pred cCCcccchhHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Q 006885 363 QLDPFGDSGMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREF 416 (627)
Q Consensus 363 ~LD~~~D~~~Lr~~L~~lr~~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~ 416 (627)
+|+.+.+. . |...++..||..||.++..|..
T Consensus 200 ~L~~~l~~----------------------~-l~~~L~~llt~~Ei~Al~~R~~ 230 (253)
T TIGR03843 200 RLRDDLDG----------------------D-LGRELAELLTPEEVAALRRRVD 230 (253)
T ss_pred HHHHhhcC----------------------h-HHHHHHHhCCHHHHHHHHHHHH
Confidence 99654431 1 5555667899999999999863
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.64 E-value=5.2e-16 Score=129.53 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=64.9
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||.+|+++.++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999885 999999999974
No 4
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.7e-16 Score=129.42 Aligned_cols=66 Identities=20% Similarity=0.367 Sum_probs=63.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
|.|.|||++||.+.+++++.|+|..+|++|++++||||.||||||.|+|+.||.+ ++..+|+||||
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6899999999999999999999999999999999999999999999999999996 89999999986
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.61 E-value=1.4e-15 Score=127.12 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=61.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
||||||+ +++++++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 8999998 5899999999999999999999999999999999999999999985 99999999996
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.60 E-value=2.1e-15 Score=134.98 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=69.8
Q ss_pred ccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 21 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 21 ~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
-.++++.|+|||||+.|+++.++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|++++||||+.
T Consensus 21 ~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 21 KLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred eeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 34588999999999999999999999999999999999999999999999999999999985 999999999964
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.59 E-value=3.5e-15 Score=124.27 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=64.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|||||||.+|+++.++|++++||++||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999998875 999999999964
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.59 E-value=3.2e-15 Score=127.34 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=63.4
Q ss_pred eEEEEEeCCCcE-EEEE-eccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYV-LGME-LDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGkt-l~~e-Ve~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|||||||.+|++ +.++ |++++||.+||++|++++|||+++|||+|+|++|+|+.+ ||+++++|||+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 899999999997 6895 899999999999999999999999999999999999985 999999999963
No 9
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.58 E-value=3.4e-15 Score=123.19 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=62.8
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|||||.+|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+ +|+++|||||++
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999885 999999999986
No 10
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=7.9e-16 Score=138.37 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=64.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|||||||.+|+|++++||+++||..||.+|+.++|||+++|+|+|+|++|+|..+ ||+..+|||++-
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~ 71 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhH
Confidence 7899999999999999999999999999999999999999999999999999986 999999999973
No 11
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.54 E-value=1.3e-14 Score=121.25 Aligned_cols=65 Identities=11% Similarity=0.210 Sum_probs=62.7
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|||||..|++++++|++++||.+||++|+++.|||+++|+|+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999999999985 999999999964
No 12
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.3e-15 Score=142.88 Aligned_cols=67 Identities=25% Similarity=0.461 Sum_probs=64.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|||||++|+++.++|++.+||..||++||+++|||++||||||.|++|+|+.+ +|+..+||||+-
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l 71 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEE
Confidence 7999999999999999999999999999999999999999999999999999874 999999999963
No 13
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.53 E-value=2e-14 Score=121.29 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=63.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
|+|+|||..|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.+ ||+++++|||-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999999999985 99999999994
No 14
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.50 E-value=3.5e-14 Score=118.70 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=61.1
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
+.||+.+|+++.++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|++++||||+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 36899999999999999999999999999999999999999999999999985 99999999995
No 15
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.50 E-value=7e-14 Score=115.43 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=64.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+||+.+|+++.++|+++.||.+||++|+++.|+|+++|||+|+|+.|.|+.+ +|+++++|||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999875 999999999975
No 16
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.50 E-value=7.6e-14 Score=116.30 Aligned_cols=67 Identities=21% Similarity=0.369 Sum_probs=64.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCC--CCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDV--PTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGI--P~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||.+|+++.++|++++||.+||++|++++|+ |+++|+|+|+|+.|+|+.+ +|+++++||++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEE
Confidence 899999999999999999999999999999999999 9999999999999999875 999999999964
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.49 E-value=7.9e-14 Score=114.02 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=64.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+||+.+|+++.++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 7899999999999999999999999999999999999999999999999999885 999999999975
No 18
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.49 E-value=6.9e-14 Score=115.48 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=64.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+||+.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999885 999999999964
No 19
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.47 E-value=1.1e-13 Score=117.43 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.|+|+||+..|+++.++|+++.||++||++|+++.|+|+++|||+|+|+.|+|+ + ||+++++|||+.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEe
Confidence 489999999999999999999999999999999999999999999999999988 5 999999999986
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.45 E-value=1.7e-13 Score=114.27 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=60.3
Q ss_pred EEEEeC-CCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-C----CccCCCCceeee
Q 006885 30 VFVQTE-MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-L----SYVRHDSPLLLT 93 (627)
Q Consensus 30 IfVKTl-tGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd-~----tgI~~dStLhLv 93 (627)
|+|||. +|+++.++|++++||++||++|++++|||+++|+|+|+|+.|+|+ . ++|+++++|||.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 999999999999999999999999999999999999999999987 3 399999999984
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.44 E-value=2.9e-13 Score=112.15 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=61.9
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+.|+|||.+|+. .++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ ||++++||||+.
T Consensus 1 ~~i~vk~~~g~~-~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCCE-EEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 479999999985 999999999999999999999999999999999999999875 999999999973
No 22
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.42 E-value=2.9e-13 Score=115.07 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=64.7
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEE--EECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSL--IYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrL--IfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.|+|+||+..|+++.++|++++||.+||++|+++.|+|+++||| +|+|+.|+|+.+ ||+++++|||+.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEE
Confidence 38999999999999999999999999999999999999999999 899999999875 999999999964
No 23
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.36 E-value=1.8e-12 Score=111.66 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=58.9
Q ss_pred eEEEEEeCCCcE--EEEEeccCCCHHHHHHHHHHHcC--CCCCCeEEEECCeEeccCCC------ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYV--LGMELDRSDNAHTVKRKLQLALD--VPTEERSLIYGDTVLKNDLS------YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGkt--l~~eVe~sdTV~~VK~kIqekeG--IP~eqQrLIfgGk~LeDd~t------gI~~dStLhLvr 94 (627)
+.|+|||++|++ +.++|++++||.+||++|++..+ .|+++|||||.|+.|+|+.+ .+.++.|||||-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 689999999999 55555899999999999999874 45799999999999999975 488999999983
No 24
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.31 E-value=9.7e-12 Score=107.64 Aligned_cols=74 Identities=7% Similarity=0.109 Sum_probs=69.4
Q ss_pred ccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 21 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 21 ~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+...+..|+|+||+.+|+++.|+|.+++++..||++++++.|||+++|||+|+|++|.++.| +++++++||++.
T Consensus 5 ~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 5 KGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred CCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999886 999999999963
No 25
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.29 E-value=7.3e-12 Score=102.15 Aligned_cols=62 Identities=26% Similarity=0.433 Sum_probs=59.3
Q ss_pred EeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 33 QTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 33 KTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
||.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999988875 999999999964
No 26
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.29 E-value=7.7e-12 Score=102.37 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=61.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
++|+||+. |+++.++|+++.||.+||++|+++.|+|+++|+|+|+|+.|.|+.+ +|+++++||++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 57999997 9999999999999999999999999999999999999999998774 89999999986
No 27
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.19 E-value=3.6e-11 Score=101.30 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=57.2
Q ss_pred CCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 35 EMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 35 ltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
++|+++.++|++++||.+||++|+...|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEE
Confidence 589999999999999999999999999999999999999999999985 999999999964
No 28
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.6e-10 Score=124.39 Aligned_cols=67 Identities=13% Similarity=0.314 Sum_probs=63.7
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcC---CCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALD---VPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeG---IP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||+.|+++.|+|++++||.+||++|++..| +|+++|+|||+|+.|+|+.+ +|+++++|+++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEe
Confidence 89999999999999999999999999999999998 99999999999999999985 899999998853
No 29
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.10 E-value=2.7e-10 Score=90.26 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=54.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCC
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDS 88 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dS 88 (627)
|+|+||+.+ +++.++|+++.||++||++|+.+.|+|++.|+|+|+|+.|.|+.+ +|++++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 799999999 799999999999999999999999999999999999999998764 666543
No 30
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.04 E-value=1.6e-12 Score=128.54 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=77.8
Q ss_pred cccCCcchhhhhhhhhcCC----C-CCCCccceEE---------EeeccccccCCCCCcc-cccccCCCCCcceeeeccc
Q 006885 205 VRVGETGFREVAAYLLDYD----H-FANVPCTALV---------KVTHEIFNINNGVNGN-KIRKRKQVSKIASLQQFIP 269 (627)
Q Consensus 205 ~lvGe~a~REVAAYLLD~~----g-f~~VP~T~lV---------~~~hp~Fn~~~~~~~~-~~~~~~~p~KiGSlQ~FV~ 269 (627)
++.++.+.+++.+|.+... | ..-||.|.-. +..++.+++....... .........+.++.|.|+.
T Consensus 28 ~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 107 (235)
T PF00454_consen 28 ILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFLK 107 (235)
T ss_dssp HHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHHH
T ss_pred HHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHHh
Confidence 4445566678999988752 2 2445655322 2222222221110000 0001123578899999998
Q ss_pred CCCCCCCCC-CCCCChhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC----CcCCCCCcccc
Q 006885 270 HDFDASDHG-TSSFPVAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP----ENLEDPYFEWI 344 (627)
Q Consensus 270 ~d~~a~d~g-~~~F~v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP----~~~~d~~f~Wl 344 (627)
...+++++. ....-+.+++.++|+||+++|.|||.+||||... +| ++++||||+||+ ...+...|+|-
T Consensus 108 ~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~--~g-----~~~hIDfg~~f~~~~~~~~e~vPFrLT 180 (235)
T PF00454_consen 108 SFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK--TG-----ELIHIDFGFIFGGKHLPVPETVPFRLT 180 (235)
T ss_dssp HSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET--TS-----EEEE--HSSCTTHHHGSSSS--SSTTH
T ss_pred cCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc--cc-----eeeeEEeHHhhhccccCCCCCCCeEeC
Confidence 877765544 2333368999999999999999999999999542 34 499999999999 23334456665
Q ss_pred cccccCCCCCHHHHHHHhc-CCcccchhHHHhhC
Q 006885 345 HWAQASIPFSEDELEYINQ-LDPFGDSGMLRLEL 377 (627)
Q Consensus 345 ~WPqA~~PFS~e~l~yI~~-LD~~~D~~~Lr~~L 377 (627)
. ...+.+.. |++..+...++..+
T Consensus 181 ~----------~~~~~~~~~l~~~~~~g~f~~~~ 204 (235)
T PF00454_consen 181 R----------NMVNAMGGYLGPSGVEGLFRSSC 204 (235)
T ss_dssp H----------HHHHHTTTSSSTSHHHHHHHHHH
T ss_pred H----------HHHHHHhccCCCchhHhHHHHHH
Confidence 3 22222211 48888888777765
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.04 E-value=5.5e-10 Score=94.46 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=60.1
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEE---CCeEeccCCC----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY---GDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIf---gGk~LeDd~t----gI~~dStLhLv 93 (627)
|.|.||- .|+++.++|++++||++||++|++..|||+++|+|+| +|+.|.|+.+ +|.+++.|+|+
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4688886 8999999999999999999999999999999999996 8999999875 89999999986
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.03 E-value=2.1e-10 Score=98.14 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=45.2
Q ss_pred cCCCHHHHHHHHHHH--cCCC-CCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 46 RSDNAHTVKRKLQLA--LDVP-TEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 46 ~sdTV~~VK~kIqek--eGIP-~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.++||.+||++|+++ +||+ ++||||||+|++|+|+.+ +|+++++|||||
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 578999999999999 5685 899999999999999986 999999999997
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.03 E-value=4.2e-10 Score=95.60 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=55.6
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-CC----ccC-CCCceeee
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-LS----YVR-HDSPLLLT 93 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd-~t----gI~-~dStLhLv 93 (627)
|-=|...|.+++++|++++||++||++|++++|||+++||| |+|+.|.|+ .+ +++ +|++|||-
T Consensus 5 ~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 5 VEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred EeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 44466789999999999999999999999999999999999 999999644 43 898 78999983
No 34
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.95 E-value=1.1e-09 Score=119.82 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=70.3
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeeccccCCCC
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTRNCMHRSS 101 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr~~i~RSs 101 (627)
..++|.|||..+ +..|.|....||..+|+.|+..+++|+|+|+|||.||.|+|+.+ +|+++.|||||++...|..
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 458999999998 88999999999999999999999999999999999999999886 9999999999986555555
Q ss_pred CCC
Q 006885 102 STP 104 (627)
Q Consensus 102 sTP 104 (627)
.++
T Consensus 93 ~~~ 95 (493)
T KOG0010|consen 93 GTA 95 (493)
T ss_pred Ccc
Confidence 533
No 35
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.80 E-value=2.2e-08 Score=79.10 Aligned_cols=66 Identities=27% Similarity=0.465 Sum_probs=62.2
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 29 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 29 qIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+++|+|..|+++.++|.++++|..+|.+|+...|+|..+|+|.|+|+.|.|+.+ +|...+++||+.
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~ 70 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVL 70 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999998874 899999999964
No 36
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.78 E-value=1.8e-08 Score=80.70 Aligned_cols=62 Identities=31% Similarity=0.477 Sum_probs=58.3
Q ss_pred EEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 32 VQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 32 VKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
||..+|+++.+++.++.||++||++|++..|+|++.|+|+|+|+.|+|+.+ ++.++++||++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 788899999999999999999999999999999999999999999988774 89999999985
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.70 E-value=6.9e-08 Score=79.66 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=61.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCC-CCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT-EERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~-eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
|+|+|++.+|+.+.+.|.++.++..|+++++++.|+|. ++.+|+|+|+.|..+.| +++++++|+++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 78999999999999999999999999999999999999 99999999999998887 99999999985
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.63 E-value=3.4e-08 Score=90.37 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=58.5
Q ss_pred CCeEEEEEeCCCcEE-EEEeccCCCHHHHHHHHH-----HHcCCC--CCCeEEEECCeEeccCCC----c------cCCC
Q 006885 26 GKRRVFVQTEMGYVL-GMELDRSDNAHTVKRKLQ-----LALDVP--TEERSLIYGDTVLKNDLS----Y------VRHD 87 (627)
Q Consensus 26 ~~mqIfVKTltGktl-~~eVe~sdTV~~VK~kIq-----ekeGIP--~eqQrLIfgGk~LeDd~t----g------I~~d 87 (627)
+..-|..|-..|..+ .+.+++++||..||++|+ .++|+| +++|+|||.|++|+|+.+ + +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 456678888888655 568899999999999999 667888 999999999999999986 5 7788
Q ss_pred Cceeee
Q 006885 88 SPLLLT 93 (627)
Q Consensus 88 StLhLv 93 (627)
.|+|||
T Consensus 83 ~TmHvv 88 (113)
T cd01814 83 ITMHVV 88 (113)
T ss_pred eEEEEE
Confidence 999996
No 39
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.46 E-value=3e-07 Score=96.97 Aligned_cols=65 Identities=23% Similarity=0.411 Sum_probs=59.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcC--CCCCCeEEEECCeEeccCCC----ccCCCCceee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALD--VPTEERSLIYGDTVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeG--IP~eqQrLIfgGk~LeDd~t----gI~~dStLhL 92 (627)
|.|+|||+.|.+|+++|.+++||..||.+|+...| .|.++|.|||.|+.|.|+.+ +|.++.-|-+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEE
Confidence 78999999999999999999999999999999988 99999999999999999986 7777665544
No 40
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.43 E-value=3.8e-07 Score=82.13 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=51.5
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC-----ccCCCCceeee
Q 006885 38 YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS-----YVRHDSPLLLT 93 (627)
Q Consensus 38 ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t-----gI~~dStLhLv 93 (627)
+..+++|.+++||+.||.+|+.++++|+++|+|+|+|+.|.|+.. ||..+|+|+|.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEE
Confidence 356788999999999999999999999999999999999988762 99999999995
No 41
>PLN02560 enoyl-CoA reductase
Probab=98.24 E-value=2.4e-06 Score=90.29 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=58.3
Q ss_pred eEEEEEeCCCcEE---EEEeccCCCHHHHHHHHHHHcCC-CCCCeEEEEC---C----eEeccCCC----ccCCCCceee
Q 006885 28 RRVFVQTEMGYVL---GMELDRSDNAHTVKRKLQLALDV-PTEERSLIYG---D----TVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 28 mqIfVKTltGktl---~~eVe~sdTV~~VK~kIqekeGI-P~eqQrLIfg---G----k~LeDd~t----gI~~dStLhL 92 (627)
|+|.||+.+|+.+ +++|+++.||++||++|+++.++ ++++|||++. | ..|+|+.+ |++++++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 7899999999998 89999999999999999999987 8899999983 3 37888764 8899999888
Q ss_pred e
Q 006885 93 T 93 (627)
Q Consensus 93 v 93 (627)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 4
No 42
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.20 E-value=6.7e-06 Score=71.18 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=53.7
Q ss_pred EEEEEeCC-CcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEE-EECCe-----EeccCC-C----ccCCCCceeeec
Q 006885 29 RVFVQTEM-GYVLGMELDRSDNAHTVKRKLQLALDVPTEERSL-IYGDT-----VLKNDL-S----YVRHDSPLLLTR 94 (627)
Q Consensus 29 qIfVKTlt-Gktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrL-IfgGk-----~LeDd~-t----gI~~dStLhLvr 94 (627)
.|+|++.. .+.....+.++.||.+||++|+...|+|+..||| +|.|+ .|.|+. + +++++++||++.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 56777643 4445556999999999999999999999999999 58877 575554 2 999999999985
No 43
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2e-06 Score=101.00 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=61.7
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|.|||++.++.+|-+..-+||..+|..|.++.+|+.+.|||||+|++|.|+++ +| ++-|||||.
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeec
Confidence 89999999999999999999999999999999999999999999999999985 88 899999985
No 44
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=8.3e-05 Score=80.76 Aligned_cols=173 Identities=23% Similarity=0.239 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHcCCCCcccccccceE---EEEEeCCCCeEEEEeCC----CCCCCCCCCCCcccccccCCCCCCCccccC
Q 006885 136 QLVKEIVKAMKKGIDPIPVHSGLGGA---YYFRNCAGENVAIVKPT----DEEPYAPNNPKGFVGSALGQPGLKRSVRVG 208 (627)
Q Consensus 136 ~lv~~v~~ai~~G~~P~~i~~GSgGs---Yf~~~~~Gk~vaVFKP~----DEEP~a~nNPk~f~~~~~g~~g~krg~lvG 208 (627)
+++..+..|+..--. +.+.-+-+|| ..++=+ +..-+||||. |+|. -|-.|. ||-|
T Consensus 151 ~~~~alL~~l~~~pI-~~v~v~~~GtqLKlll~~~-~~~KavfKPmR~~Rd~~~----~~~yfs-------~~dR----- 212 (486)
T KOG3829|consen 151 QSMGALLHALRTEPI-TRVSVLGRGTQLKLLLRLS-HQQKVVFKPMRYPRDEVI----DGMYYS-------GFDR----- 212 (486)
T ss_pred hhHHHHHHHhhcCcc-eEEeecCCceEEEEEEEec-CCceeeeccccCCccccC----CCcccc-------cccc-----
Confidence 677777777765322 2455666777 444433 4457899976 4442 111222 2212
Q ss_pred CcchhhhhhhhhcC-CCCCCCccceEE--Eeecc-----------ccccCCCCCccccc------------ccCCCCCcc
Q 006885 209 ETGFREVAAYLLDY-DHFANVPCTALV--KVTHE-----------IFNINNGVNGNKIR------------KRKQVSKIA 262 (627)
Q Consensus 209 e~a~REVAAYLLD~-~gf~~VP~T~lV--~~~hp-----------~Fn~~~~~~~~~~~------------~~~~p~KiG 262 (627)
---||||+=||. .||..+|||+=+ .++-. +|+..-+.+..-.. =....-..|
T Consensus 213 --HnAEiAAFHLDRiL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~~avCg~pdmlEG 290 (486)
T KOG3829|consen 213 --HNAEVAAFHLDRVLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTEEAVCGDPDMLEG 290 (486)
T ss_pred --cchhhhhhhhhhhhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCcccccCCcccccc
Confidence 125999999998 899999999743 33221 23322211111000 012367889
Q ss_pred eeeecccCCCCCCC-CCCC------------CCC--------------------hhhhhhccccceEeecCCCCCCceEE
Q 006885 263 SLQQFIPHDFDASD-HGTS------------SFP--------------------VAAVHRIGILDIRILNTDRHAGNLLV 309 (627)
Q Consensus 263 SlQ~FV~~d~~a~d-~g~~------------~F~--------------------v~evhKIaILDiri~NtDRh~GNiLV 309 (627)
|+|.|+++...... ..++ .+. +-++-.|+||||+|.|.|||-=--.-
T Consensus 291 S~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLiGN~DRHHYEtF~ 370 (486)
T KOG3829|consen 291 SLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLIGNMDRHHYETFE 370 (486)
T ss_pred eEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 99999986332210 0000 000 24678899999999999999643221
Q ss_pred eeecCCCCCcceEEEeecCccccCC
Q 006885 310 KKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 310 ~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
.. | +.--++-+|||=+|-.
T Consensus 371 ~f----~--d~s~~ihLDngr~FGr 389 (486)
T KOG3829|consen 371 VF----G--DLSFLIHLDNGRAFGR 389 (486)
T ss_pred cc----C--CcceEEEeccccccCC
Confidence 11 1 1235888999999873
No 45
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.68 E-value=0.00019 Score=52.93 Aligned_cols=61 Identities=20% Similarity=0.359 Sum_probs=54.3
Q ss_pred EeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 33 QTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 33 KTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
+..+|....+.+.+..||++||++|+++.|++++.|.|+++|..+.+... ++.++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 33478999999999999999999999999999999999999999987763 78889998886
No 46
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.44 E-value=0.00062 Score=58.83 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=51.2
Q ss_pred EEEEEeCCC--cEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC----C---eEeccCC-C----ccCCCCceeeec
Q 006885 29 RVFVQTEMG--YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG----D---TVLKNDL-S----YVRHDSPLLLTR 94 (627)
Q Consensus 29 qIfVKTltG--ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg----G---k~LeDd~-t----gI~~dStLhLvr 94 (627)
.|+|....- +.....+..+.||++||++|+...|+|+..|+|.+- + ..|.|+. + +++++.+||++-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 466666555 488999999999999999999999999999999765 2 2344444 2 999999999974
No 47
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.19 E-value=0.00091 Score=56.71 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=49.2
Q ss_pred EEEEEeCCCcEEE-EEec-cCCCHHHHHHHHHHHcC-CCCCCeEEE--ECCeEeccCCC----ccCCCCceee
Q 006885 29 RVFVQTEMGYVLG-MELD-RSDNAHTVKRKLQLALD-VPTEERSLI--YGDTVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 29 qIfVKTltGktl~-~eVe-~sdTV~~VK~kIqekeG-IP~eqQrLI--fgGk~LeDd~t----gI~~dStLhL 92 (627)
.|.+|....+.+. ++++ ++.||.+||..|+++.+ ++++.|||. +.|+.|.|+.+ |+.++++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 4566654424443 4454 78899999999999875 578999995 78999998875 8999999886
No 48
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.17 E-value=0.0019 Score=59.32 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=47.8
Q ss_pred CeEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHH-----c--CCCCCCeEEEECCeEeccCCC----ccCCC------C
Q 006885 27 KRRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLA-----L--DVPTEERSLIYGDTVLKNDLS----YVRHD------S 88 (627)
Q Consensus 27 ~mqIfVKTltGk-tl~~eVe~sdTV~~VK~kIqek-----e--GIP~eqQrLIfgGk~LeDd~t----gI~~d------S 88 (627)
...|..+-.+|+ +..+.+++++||++||++|... . -..+.+.||||.|+.|+|+.+ .+..+ .
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 345666667999 8999999999999999999875 2 123357899999999999885 34332 3
Q ss_pred ceeee
Q 006885 89 PLLLT 93 (627)
Q Consensus 89 tLhLv 93 (627)
++|||
T Consensus 82 vmHlv 86 (111)
T PF13881_consen 82 VMHLV 86 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 79995
No 49
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.10 E-value=0.0014 Score=60.70 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=48.6
Q ss_pred EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----cc-------CCCCceeee
Q 006885 39 VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YV-------RHDSPLLLT 93 (627)
Q Consensus 39 tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI-------~~dStLhLv 93 (627)
|+-+++.++.||.+||++|+.-.-.|+++|||+-.+..|+|+.+ |+ ++.++|-|.
T Consensus 13 TiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa 78 (119)
T cd01788 13 TIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLA 78 (119)
T ss_pred EEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEE
Confidence 46669999999999999999999999999999967788999885 77 778888885
No 50
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.80 E-value=0.0016 Score=56.52 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=37.7
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC---CeEec--cCCC----ccCCCCceeee
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG---DTVLK--NDLS----YVRHDSPLLLT 93 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg---Gk~Le--Dd~t----gI~~dStLhLv 93 (627)
+.|.|=|++..|- ..|+|++++|+.+||++|++.+++|...|.|..+ ...|. ++.+ ||++|+.|+|.
T Consensus 3 ~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 4588999998875 5889999999999999999999999998888433 11231 1222 78888888774
No 51
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0041 Score=66.22 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=56.2
Q ss_pred eEEEEE---eCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQ---TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVK---TltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|.|+|+ |..-..++++|+...+|..||+-++...|+|++|-++||.|+.|.|+-+ .+.-.|.+|+++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 445554 4455679999999999999999999999999999999999999998864 455678889874
No 52
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=96.33 E-value=0.0013 Score=55.94 Aligned_cols=38 Identities=32% Similarity=0.265 Sum_probs=28.5
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEee
Q 006885 284 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPI 326 (627)
Q Consensus 284 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI 326 (627)
+.++-++.+|+++|+|+|||.+||-+-.. .+.++|.|+
T Consensus 40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~-----~~~~~LaP~ 77 (79)
T PF07804_consen 40 VRELFRRLVFNYLIGNTDRHLKNFSFLYD-----GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHCTBS---CCCSEEEEE-----CCEEEE--B
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCEEEEEc-----CCeEEecCC
Confidence 57889999999999999999999999883 246789987
No 53
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.00 E-value=0.024 Score=49.25 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=53.1
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC----CeEeccCCC-----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG----DTVLKNDLS-----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg----Gk~LeDd~t-----gI~~dStLhLv 93 (627)
+||.||-..+..+++.|.|..+|..||.+|....|++ .+|||.|- -++|-.+.+ ||-.+-.|.|+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 4899999999999999999999999999999999999 69999996 345554443 66655555554
No 54
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=95.69 E-value=0.016 Score=59.24 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=63.4
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCCcCCCCCccc-ccccccCCCCCHHHHHHHh
Q 006885 284 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEW-IHWAQASIPFSEDELEYIN 362 (627)
Q Consensus 284 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~~~~d~~f~W-l~WPqA~~PFS~e~l~yI~ 362 (627)
+.++--|+|||++|+|+|||-.|..-+. |. ..-++-+|||-.|-...-| .+.= +.+-|. -=|...|.+.++
T Consensus 89 LldliDm~IFDFLigN~DRhhye~f~~f----gn--~~~l~~LDNgrgFG~~~~d-e~sIlaPL~Qc-C~iRrST~~rL~ 160 (221)
T PF06702_consen 89 LLDLIDMAIFDFLIGNMDRHHYETFNKF----GN--EGFLLHLDNGRGFGRPSHD-ELSILAPLYQC-CRIRRSTWERLQ 160 (221)
T ss_pred hhHHHHHHHHHHHhcCCcchhhhhhhcc----CC--CceEEEEeCCcccCCCCCC-ccchhccHHHh-hhccccHHHHHH
Confidence 3577889999999999999999966322 22 2347899999999432222 1111 223344 346677777777
Q ss_pred cCC--cccchhHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 006885 363 QLD--PFGDSGMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSRE 415 (627)
Q Consensus 363 ~LD--~~~D~~~Lr~~L~~lr~~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~ 415 (627)
.|. ...-.++||+.+ ....+.-=|+-..+.+|..|-
T Consensus 161 ~l~~~~~~Ls~~m~~s~-----------------~~D~l~PvL~e~Hl~AldrRL 198 (221)
T PF06702_consen 161 LLSKGGYRLSDLMRESL-----------------SRDPLAPVLTEPHLEALDRRL 198 (221)
T ss_pred HhccCCCcHHHHHHHHh-----------------ccCccCccCcHHHHHHHHHHH
Confidence 664 222222222221 112233457777788887775
No 55
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.051 Score=60.64 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=58.3
Q ss_pred EEEEEeCCCcEEEEE-eccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-C---CccCCCCceeeec
Q 006885 29 RVFVQTEMGYVLGME-LDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-L---SYVRHDSPLLLTR 94 (627)
Q Consensus 29 qIfVKTltGktl~~e-Ve~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd-~---tgI~~dStLhLvr 94 (627)
.|.||- .|+++.++ ++..+|+..+|++|....|+||+.|++.+.|..|.|| + -.|+++.+|||+=
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 366765 79999998 9999999999999999999999999999999999988 3 2799999999973
No 56
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=92.52 E-value=0.15 Score=54.06 Aligned_cols=40 Identities=28% Similarity=0.562 Sum_probs=34.2
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..--..|.=|++.=.|||.+||||.. +|+ ++.||=|++|-
T Consensus 132 S~A~ySvv~YvLGigDRH~~NILi~~---~G~-----liHIDFG~~fg 171 (293)
T cd05168 132 SLAGYSLICYLLQIKDRHNGNILIDN---DGH-----IIHIDFGFMLS 171 (293)
T ss_pred HHHHHHHHHHHhhccccCCCceEEcC---CCC-----EEEEehHHhhc
Confidence 45556778899999999999999987 564 99999999997
No 57
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=92.50 E-value=0.26 Score=48.46 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=43.7
Q ss_pred eEEEEEeCCC----cEEEEEeccCCCHHHHHHHHHHHcCCCCCCe-EEEEC-CeEec
Q 006885 28 RRVFVQTEMG----YVLGMELDRSDNAHTVKRKLQLALDVPTEER-SLIYG-DTVLK 78 (627)
Q Consensus 28 mqIfVKTltG----ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQ-rLIfg-Gk~Le 78 (627)
|+|||+|..| .++.+.+.++.||.+|+.+|....++|...| .|.+. +++|.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~ 57 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLS 57 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeC
Confidence 6899999999 6999999999999999999999999998775 45553 56663
No 58
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=91.89 E-value=0.37 Score=43.51 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=39.2
Q ss_pred EEEEEeCC-CcEEEEEec--cCCCHHHHHHHHHHHcCC--CCCCeEEEECCeEeccCC
Q 006885 29 RVFVQTEM-GYVLGMELD--RSDNAHTVKRKLQLALDV--PTEERSLIYGDTVLKNDL 81 (627)
Q Consensus 29 qIfVKTlt-Gktl~~eVe--~sdTV~~VK~kIqekeGI--P~eqQrLIfgGk~LeDd~ 81 (627)
.|.|+-.+ -..+.+++. .+.||..||++|.+..+= .-..+||||+|+.|.|.-
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t 59 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHT 59 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccc
Confidence 35555444 334777777 889999999999999832 223578999999998764
No 59
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=91.68 E-value=0.3 Score=51.88 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=34.5
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
.+--..|.=|++.=.|||.|||||.. +|+ ++.||-|++|-.
T Consensus 130 SlA~ySvv~YiLgigDRH~~NILid~---~G~-----liHIDFG~ilg~ 170 (289)
T cd00893 130 SMAGYSLLCYLLQIKDRHNGNILLDS---DGH-----IIHIDFGFILDS 170 (289)
T ss_pred HHHHHHHHHHHhhccccCCCceEECC---CCC-----EEEEehHHhhCc
Confidence 45556778899999999999999976 564 999999999973
No 60
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=91.08 E-value=0.3 Score=53.28 Aligned_cols=67 Identities=27% Similarity=0.330 Sum_probs=50.5
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCCcCCCCCcccccccccCCCCCHHHHHHHh
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYIN 362 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~ 362 (627)
...---+|.=|++.=.|||.||||+.. +|+ ++.||=|+.|- ..+++..+....+-.+|+++.++.|.
T Consensus 193 ~S~AgYsV~tYiLgIgDRHndNImi~~---~Gh-----lfHIDFG~iLg---~~~~~g~~~re~~PF~Lt~emv~vm~ 259 (354)
T cd00895 193 YSCAGCCVATYVLGICDRHNDNIMLKT---TGH-----MFHIDFGRFLG---HAQMFGNIKRDRAPFVFTSDMAYVIN 259 (354)
T ss_pred HHHHHHHHHHHHccccccCCCceeEcC---CCC-----EEEEeeHHhcC---CCcccCCCCcCCCCccccHHHHHHhc
Confidence 344556788899999999999999986 564 99999999998 44566666555554556777776653
No 61
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=90.94 E-value=0.87 Score=38.45 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=41.0
Q ss_pred eCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceee
Q 006885 34 TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 34 TltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhL 92 (627)
+.+|+.+.+.|.|+.++.+|=++.-.++|+.+++-.|.|+++.|+-+.. |+.+++.|-|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4689999999999999999999999999999998899999999977763 8888888754
No 62
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=1.5 Score=40.17 Aligned_cols=70 Identities=7% Similarity=0.143 Sum_probs=62.1
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+.-+.+.|+--.|.++.|.|.++.....|+.--.++.|++..+-|++|+|+.+..+.| +.+++.+|-.+.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 4557778888889999999999999999999999999999999999999999998886 788888888764
No 63
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=88.82 E-value=0.86 Score=41.63 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=43.5
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEE-CC-eEeccCCC-----------ccCCCCceee
Q 006885 38 YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY-GD-TVLKNDLS-----------YVRHDSPLLL 92 (627)
Q Consensus 38 ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIf-gG-k~LeDd~t-----------gI~~dStLhL 92 (627)
.++-++.+++.||-+||++++.-.--|+..|||+- .. +.|+|..+ ..++.+++-|
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeee
Confidence 45777999999999999999999888999999986 33 55666653 4566666666
No 64
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=87.53 E-value=0.29 Score=52.45 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=33.7
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..--..|.=|++.=.|||.||||+.. +|+ ++.||=|++|-
T Consensus 151 S~Agysv~tYiLgigDRHn~NILid~---~G~-----l~HIDFG~il~ 190 (311)
T cd05167 151 SMAAYSLISYLLQIKDRHNGNIMIDD---DGH-----IIHIDFGFIFE 190 (311)
T ss_pred HHHHHHHHHHHhhccccCccceEEcC---CCC-----EEEEeeHHhhc
Confidence 34556677788999999999999987 564 99999999996
No 65
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.45 E-value=0.69 Score=54.58 Aligned_cols=116 Identities=20% Similarity=0.341 Sum_probs=68.1
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCCcCCCCCcccccccccCCCCCHHHHHHHhcC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYINQL 364 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~~~~d~~f~Wl~WPqA~~PFS~e~l~yI~~L 364 (627)
..+---.+.=|++-=-|||.||||+.. .| |++.||-|+-|-.+--.--|+ ..||- =|.+||+-|
T Consensus 685 qSlagYSLvcYlLQvKDRHNGNILiD~---EG-----HIIHIDFGFmLsnsPgnvgFE-------sAPFK-LT~EylEvm 748 (847)
T KOG0903|consen 685 QSLAGYSLVCYLLQVKDRHNGNILIDE---EG-----HIIHIDFGFMLSNSPGNVGFE-------SAPFK-LTTEYLEVM 748 (847)
T ss_pred HHHHHHHHHHHhhhcccccCCceEecC---CC-----CEEEEeeeeEecCCCCCcccc-------cCchh-hHHHHHHHh
Confidence 334445567788888999999999965 34 599999999987432111133 23441 233444444
Q ss_pred C---cccc---hhHHHhhCCcchHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHhcccC
Q 006885 365 D---PFGD---SGMLRLELPMIREACLRVLVICTIFLKEAAAF---GLCLADIGEMMSREFR 417 (627)
Q Consensus 365 D---~~~D---~~~Lr~~L~~lr~~clr~l~i~T~lLk~~a~~---gLtl~eIg~~m~R~~~ 417 (627)
+ .+.- -.++...+-.+|.-.-|+..++.+ +|.+-.+ .--...|..+..|--.
T Consensus 749 gG~~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEi-Mq~~S~~pCF~aG~~Ti~nL~~RFhL 809 (847)
T KOG0903|consen 749 GGLDSDMFDYFKSLMLQGFMALRKHADRIVLLVEI-MQDGSGMPCFRAGERTIQNLRQRFHL 809 (847)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCcccccChHHHHHHHHHhcc
Confidence 3 2111 022222222466667777888877 6764433 1224678888888654
No 66
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=86.66 E-value=0.53 Score=51.39 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=34.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
...--.+|.=|++.=.|||.||||+.. +|+ ++.||-|++|-
T Consensus 193 ~S~AgysvvtYiLGigDRHn~NILi~~---~G~-----~~HIDFG~ilg 233 (354)
T cd05177 193 HSCAGWCVVTFILGVCDRHNDNIMLTH---SGH-----MFHIDFGKFLG 233 (354)
T ss_pred HHHHHHHHHHHHhcccCcCCCceeEcC---CCC-----EEEEehHHhcC
Confidence 345557788899999999999999975 564 99999999997
No 67
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=86.65 E-value=0.2 Score=54.12 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=52.5
Q ss_pred CeEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHHc-CCC-CCCeEEEECCeEeccCCC------ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLAL-DVP-TEERSLIYGDTVLKNDLS------YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGk--tl~~eVe~sdTV~~VK~kIqeke-GIP-~eqQrLIfgGk~LeDd~t------gI~~dStLhLvr 94 (627)
...++||..+-+ .+.|..+...||+.||..++... +-| +.+|||||.|+.|.|..| +-....++|||.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 457788877654 68899999999999999988874 222 257999999999999987 233456788875
No 68
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=83.17 E-value=1.6 Score=47.57 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=34.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
...--.+|.=|++.=.|||.||||+.. +|+ ++.||-|++|-
T Consensus 192 ~S~A~ysvv~YiLgigDRH~~NILl~~---~G~-----l~HIDFG~~lg 232 (353)
T cd05166 192 YSCAGCCVATYVLGICDRHNDNIMLTK---SGH-----MFHIDFGKFLG 232 (353)
T ss_pred hHHHHHHHHHHHhhccccCCCceEECC---CCC-----EEEEeeHHhcc
Confidence 345567788899999999999999976 564 99999999996
No 69
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.09 E-value=1.4 Score=45.24 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=54.9
Q ss_pred ccCCCeEEEEE---eCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC----CccCCCCce
Q 006885 23 QHSGKRRVFVQ---TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL----SYVRHDSPL 90 (627)
Q Consensus 23 ~~s~~mqIfVK---TltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~----tgI~~dStL 90 (627)
+++..-+.+.| |.+++.+.+-+...+||.++|.+++.++|+.+-.|+++|+|..|-|.. |+|++++--
T Consensus 139 pp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rY 213 (231)
T KOG0013|consen 139 PPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRY 213 (231)
T ss_pred CCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEE
Confidence 34544444444 458999999999999999999999999999988999999999997643 578887543
No 70
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=81.68 E-value=2.3 Score=46.47 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=34.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..+--.+|+=|++.=.|||.||||+.. +|+ ++.||-|++|-
T Consensus 193 ~S~A~ysv~~YiLgigDRH~~NILi~~---~G~-----~~HIDFG~ilg 233 (352)
T cd00891 193 YSCAGYCVATYVLGIGDRHNDNIMLTK---TGH-----LFHIDFGHFLG 233 (352)
T ss_pred hhHHHHHHHHHHccccccCCCceEECC---CCC-----EEEEehHHhhc
Confidence 345567788899999999999999975 564 99999999994
No 71
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=81.59 E-value=0.76 Score=50.24 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=34.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
...--.+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-
T Consensus 192 ~S~AgYsv~tYiLGIgDRHn~NILi~~---~Gh-----l~HIDFG~ilg 232 (353)
T cd05176 192 YSCAGCCVATYVLGICDRHNDNIMLRS---TGH-----MFHIDFGKFLG 232 (353)
T ss_pred HHHHHHHHHhhhccccCcCCcceEEcC---CCC-----EEEEeeHHhcC
Confidence 345567788899999999999999976 564 99999999996
No 72
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=81.50 E-value=0.67 Score=50.79 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=33.7
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..--..|.=|++.=.|||.|||||.. +|+ ++.||-|++|-
T Consensus 199 S~AgysVvtYiLGIGDRHn~NILi~~---~G~-----l~HIDFG~ilg 238 (361)
T cd05174 199 SCAGYCVATYVLGIGDRHSDNIMIRE---SGQ-----LFHIDFGHFLG 238 (361)
T ss_pred HHHHHHHHHHHhcccCcCccceeEcC---CCC-----EEEEehHHhhc
Confidence 34556788899999999999999976 554 99999999995
No 73
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=81.27 E-value=0.7 Score=50.69 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=33.5
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..--.+|.=|++.=.|||.|||||.. +|+ ++.||-|++|-
T Consensus 203 S~AgYsV~tYiLGIgDRHndNImi~~---~G~-----lfHIDFG~ilg 242 (365)
T cd00894 203 SCAGYCVATFVLGIGDRHNDNIMITE---TGN-----LFHIDFGHILG 242 (365)
T ss_pred HhHHHHHHHHhccccCccccceeEcC---CCC-----EEEEeeHHhhC
Confidence 34456677799999999999999986 564 99999999996
No 74
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=80.53 E-value=0.63 Score=51.05 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=34.0
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..--.+|.=|++.=.|||.||||+.. +|+ ++.||-|++|-
T Consensus 203 S~AgysvvtYiLGigDRH~~NILi~~---~G~-----l~HIDFG~ilg 242 (366)
T cd05165 203 SCAGYCVATFVLGIGDRHNDNIMVKE---TGQ-----LFHIDFGHILG 242 (366)
T ss_pred HHHHHHHHHHHhhccccCCcceEEcC---CCC-----EEEEehHHhhc
Confidence 44557788899999999999999976 564 99999999994
No 75
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=79.94 E-value=0.75 Score=50.49 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=34.1
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..---+|.=|++.=.|||.|||||.. +|+ ++.||=|++|-
T Consensus 202 S~AgYsV~tYiLGIgDRHndNImi~~---~G~-----l~HIDFG~iLg 241 (366)
T cd05175 202 SCAGYCVATFILGIGDRHNSNIMVKD---DGQ-----LFHIDFGHFLD 241 (366)
T ss_pred HHHHHHHHHHHhcccccCccceeEcC---CCC-----EEEEehHHhhc
Confidence 44556788899999999999999986 564 99999999995
No 76
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=79.81 E-value=0.76 Score=50.37 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=33.8
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..--.+|.=|++.=.|||.|||||.. +|+ ++.||=|++|-
T Consensus 199 S~AgYsvvtYILGIGDRHn~NILi~~---~G~-----l~HIDFG~ilg 238 (362)
T cd05173 199 SCAGYCVATYVLGIGDRHSDNIMVRK---NGQ-----LFHIDFGHILG 238 (362)
T ss_pred HHHHHHHHHHHhhccccCCCceEECC---CCC-----EEEEehHHhhc
Confidence 44556778899999999999999975 564 99999999995
No 77
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.67 E-value=1 Score=38.53 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=41.5
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC
Q 006885 29 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS 82 (627)
Q Consensus 29 qIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t 82 (627)
+|.+..--||++.+.+.+.|||+++|+-|+.+.|..++...|=-....++|.++
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~ 56 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHIT 56 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccc
Confidence 445555679999999999999999999999999998877666433444555543
No 78
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=78.44 E-value=6 Score=35.33 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=34.4
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCC
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTE 66 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~e 66 (627)
..+|+..|+++.|.+.++..+..+++.|.+++|+..+
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 5688999999999999999999999999999999864
No 79
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=77.93 E-value=0.87 Score=49.61 Aligned_cols=41 Identities=32% Similarity=0.420 Sum_probs=35.1
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
...--..|.=|++.=.|||.||||+.. +|+ ++.||=|++|-
T Consensus 192 ~S~A~ysvv~YiLGigDRH~~NILi~~---~G~-----~~HIDFG~ilg 232 (350)
T cd00896 192 KSCAGYCVITYILGVGDRHLDNLLLTK---DGK-----LFHIDFGYILG 232 (350)
T ss_pred HHHHHHHHHHHHhcccccCCCcEEEcC---CCC-----EEEEEhHHhhC
Confidence 345667888899999999999999975 564 99999999996
No 80
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=77.07 E-value=1.3 Score=49.60 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=33.5
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEee-cC
Q 006885 284 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPI-DH 328 (627)
Q Consensus 284 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DH 328 (627)
..++.|..+|.++|+|+|.|+.|+=+-..+ .+.++|.|+ |-
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~----~~~~~LAPaYDi 368 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSD----GRPLALAPVYDM 368 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECC----CCCeeecchhhc
Confidence 356778899999999999999999887732 246889998 76
No 81
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=76.28 E-value=21 Score=30.17 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=51.1
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCC-eEEE--ECCeEeccCC--C----ccCCCCceee
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEE-RSLI--YGDTVLKNDL--S----YVRHDSPLLL 92 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eq-QrLI--fgGk~LeDd~--t----gI~~dStLhL 92 (627)
++-.+|-||..+|+.+.-...+++||+.|.+-|......+... =.|+ |--+.|.++. + ++...++|++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4557899999999999999999999999999998887666543 4665 4466675543 2 4555566665
No 82
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=75.59 E-value=1.3 Score=52.56 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=34.5
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
..---.|+-|++.=.|||.|||||.. +|+ |+-||-|+.|-+
T Consensus 1136 S~AGYsViTYILgIgDRHngNILId~---dGh-----LfHIDFGFILg~ 1176 (1374)
T PTZ00303 1136 SAKLFLLLNYIFSIGDRHKGNVLIGT---NGA-----LLHIDFRFIFSE 1176 (1374)
T ss_pred HHHHHHHHHHHhccCcccCCceeEcC---CCC-----EEEEecceeecC
Confidence 34445678899999999999999988 564 999999999884
No 83
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=72.32 E-value=1.8 Score=43.00 Aligned_cols=41 Identities=29% Similarity=0.456 Sum_probs=35.8
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..+--..++-|++.=.|||.+|||+.+ +|+ ++.||=|++|-
T Consensus 91 ~SlA~~s~~~YilglgDRh~~NIli~~---~G~-----v~hIDfg~~~~ 131 (202)
T smart00146 91 RSCAGYSVITYILGLGDRHNDNIMLDK---TGH-----LFHIDFGFILG 131 (202)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeC---CCC-----EEEEechhhhC
Confidence 456678899999999999999999984 565 99999999997
No 84
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=70.58 E-value=2.3 Score=44.35 Aligned_cols=42 Identities=24% Similarity=0.548 Sum_probs=35.5
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..+--..++=|++.=.|||.+|||+... +|+ ++.||-|.||-
T Consensus 171 ~S~A~~Sv~~YilglgDRH~~NIll~~~--tG~-----v~HIDfg~~f~ 212 (280)
T cd05169 171 RSLAVMSMVGYILGLGDRHPSNIMIDRL--TGK-----VIHIDFGDCFE 212 (280)
T ss_pred HHHHHHHHHHhheeccCCCcceEEEEcC--CCC-----EEEEecHHHHh
Confidence 4566788889999999999999999884 343 99999999984
No 85
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=70.07 E-value=10 Score=32.31 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=44.3
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCe------EEE-ECCeEeccCCC----ccCCCCceee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEER------SLI-YGDTVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQ------rLI-fgGk~LeDd~t----gI~~dStLhL 92 (627)
.+|.|....|+.+-+.+-...+|..+...|.+..+.+.... +|. -+|..|.++.+ +|.+|++|+|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 46778776689999999999999999999999988754332 333 45889988886 9999999987
No 86
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=69.55 E-value=6 Score=41.35 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=25.6
Q ss_pred hhhhhhccccceEeecCCC----------CCCceEEeeec
Q 006885 284 VAAVHRIGILDIRILNTDR----------HAGNLLVKKFE 313 (627)
Q Consensus 284 v~evhKIaILDiri~NtDR----------h~GNiLV~~~~ 313 (627)
..++-||-+||+.++|.|| |..|||++..+
T Consensus 121 ~~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~~ 160 (238)
T cd05124 121 LIQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDIP 160 (238)
T ss_pred HHHhhhhheeeeeecCCCCCCccccccCCCcceEEEEccc
Confidence 3678999999999999998 67889998753
No 87
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=67.42 E-value=17 Score=30.30 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=41.9
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLvr 94 (627)
|+|+| +|+.+ +++...|+..||+++.. +.--+|++|-+..++.. +++++.|.|++
T Consensus 1 M~I~v---N~k~~--~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~-L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV---NEKEI--ETEENTTLFELRKESKP------DADIVILNGFPTKEDIE-LKEGDEVFLIK 55 (57)
T ss_pred CEEEE---CCEEE--EcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccc-cCCCCEEEEEe
Confidence 67777 56654 55677899999987544 23377999999988877 88888888876
No 88
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.15 E-value=4.9 Score=47.23 Aligned_cols=45 Identities=33% Similarity=0.479 Sum_probs=37.6
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCCcCCCCC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPY 340 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~~~~d~~ 340 (627)
...---+|.=|+++=.|||.||+|+.+ +|+ +..||-|+.|- -||+
T Consensus 684 kScaGYsVitYILGvGDRhldNLllT~---dGk-----~FHiDFgyIlG---RDPK 728 (843)
T KOG0906|consen 684 KSCAGYSVITYILGVGDRHLDNLLLTK---DGK-----LFHIDFGYILG---RDPK 728 (843)
T ss_pred HhhccceeeeeeecccCCCcCceEEcc---CCc-----EEEEeeeeecc---CCCC
Confidence 344556788899999999999999999 675 99999999998 5654
No 89
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=65.47 E-value=27 Score=31.90 Aligned_cols=87 Identities=6% Similarity=0.036 Sum_probs=64.8
Q ss_pred cCCCCCCCCCcccccccCC-CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----
Q 006885 8 GGINGEHGGSKRMESQHSG-KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS---- 82 (627)
Q Consensus 8 ~~~~~~~~~~~~~~~~~s~-~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t---- 82 (627)
++.+.|+..+.....++.. -+-+.|=--.|.++-|.|..+.+...+-.-...+.|-....-|++|+|+.+.-+++
T Consensus 4 S~~~~e~kt~~~p~vkp~t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dl 83 (103)
T COG5227 4 SDSGSEFKTNENPLVKPITKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDL 83 (103)
T ss_pred cccchhhccccCccccccccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhc
Confidence 4456777777777766654 23344444489999999999999988887778888888888999999999988876
Q ss_pred ccCCCCceeeec
Q 006885 83 YVRHDSPLLLTR 94 (627)
Q Consensus 83 gI~~dStLhLvr 94 (627)
+.+++..|..|+
T Consensus 84 dmEdnd~iEav~ 95 (103)
T COG5227 84 DMEDNDEIEAVT 95 (103)
T ss_pred CCccchHHHHHH
Confidence 566666555543
No 90
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=64.62 E-value=2.9 Score=52.64 Aligned_cols=42 Identities=24% Similarity=0.542 Sum_probs=34.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
....--+|+-|++.=-|||.||||+.. .| |++.||-|+.|-.
T Consensus 1642 ~S~A~Ysv~s~lLq~KDRHNGNim~Dd---~G-----~~iHIDFGf~~e~ 1683 (1803)
T KOG0902|consen 1642 RSMAGYSVLSYLLQIKDRHNGNIMIDD---QG-----HIIHIDFGFMFES 1683 (1803)
T ss_pred HHHHHHHHHHHHcccccccCCceeEcc---CC-----CEEEEeeeeEEec
Confidence 345556788999999999999999976 45 4999999998863
No 91
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=64.08 E-value=5.2 Score=48.37 Aligned_cols=36 Identities=36% Similarity=0.490 Sum_probs=30.9
Q ss_pred cccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 291 GILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 291 aILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
+|--|+++=.|||.+||||+. +|. |..||-|=.|-+
T Consensus 919 cVATyVLGIgDRHsDNIMvke---~Gq-----lFHIDFGHiLGh 954 (1076)
T KOG0904|consen 919 CVATYVLGIGDRHSDNIMVKE---TGQ-----LFHIDFGHILGH 954 (1076)
T ss_pred eeeeeeecccccccCceEEec---cCc-----EEEEEhhhhhcc
Confidence 455689999999999999998 664 999999988875
No 92
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=63.97 E-value=51 Score=28.01 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=41.3
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE--ECCeEecc
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI--YGDTVLKN 79 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI--fgGk~LeD 79 (627)
+--+|-||..+|+.+.-....++||++|.+-|....+.....-+|+ |--+.|.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~ 58 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTK 58 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCcc
Confidence 3468999999999999999999999999999966666554455564 33555544
No 93
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=60.23 E-value=6.1 Score=40.66 Aligned_cols=43 Identities=30% Similarity=0.350 Sum_probs=35.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
..+--.+++=|++.=.|||.+|||+... +|+ ++-||=|.+|-.
T Consensus 126 ~S~A~~S~~~YilglgDRH~~NIli~~~--tG~-----v~HIDfg~~f~~ 168 (235)
T cd05172 126 KSLAAMCVSHWILGIGDRHLSNFLVDLE--TGG-----LVGIDFGHAFGT 168 (235)
T ss_pred HHHHHHHHHhheeeccCCCcccEEEECC--CCc-----EEEEeeHhhhcc
Confidence 4566678888999999999999999863 454 999999999973
No 94
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=59.93 E-value=4.8 Score=42.32 Aligned_cols=42 Identities=31% Similarity=0.433 Sum_probs=35.6
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..+--+.++=|++.=.|||.+|||+... +|+ ++.||-|.||-
T Consensus 171 ~S~A~~s~~~yilglgDRh~~NIll~~~--tG~-----v~hiDf~~~f~ 212 (279)
T cd05171 171 RSVATSSIVGYILGLGDRHANNILIDEK--TAE-----VVHIDLGIAFE 212 (279)
T ss_pred HHHHHHHHHHHhhccCCCCcccEEEEcC--cCc-----EEEEechhhhc
Confidence 4566788889999999999999999863 344 99999999996
No 95
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=59.67 E-value=4.5 Score=41.59 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=35.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
..+--.+++=|++.=.|||.+|||+... +|+ ++.||=|.+|-.
T Consensus 129 ~SlA~~s~~~YilgigDRh~~NIli~~~--tG~-----~~HIDfg~~~~~ 171 (237)
T cd00892 129 RSTAVMSMVGYILGLGDRHGENILFDSN--TGD-----VVHVDFNCLFDK 171 (237)
T ss_pred HHHHHHHHHHHHhccCCCCcccEEEEcC--CCc-----EEEEehHhhhcc
Confidence 3466677888999999999999999874 343 999999999974
No 96
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=58.45 E-value=12 Score=32.20 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred eccCCCHHHHHHHHHHHcCC-CCCCeEEEECCeEeccCCC-----ccCCCCceeeec
Q 006885 44 LDRSDNAHTVKRKLQLALDV-PTEERSLIYGDTVLKNDLS-----YVRHDSPLLLTR 94 (627)
Q Consensus 44 Ve~sdTV~~VK~kIqekeGI-P~eqQrLIfgGk~LeDd~t-----gI~~dStLhLvr 94 (627)
|.++++|.+|++-|...... .--.=.|.++|+.|++... ++.++++|+|+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56889999999998886432 1122367889999976552 788899999974
No 97
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=57.98 E-value=41 Score=28.14 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=37.2
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006885 29 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD 74 (627)
Q Consensus 29 qIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG 74 (627)
.|.|+. .|.+..+.|.+..|-.+|+++|+.+++++.....|-|.+
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 455554 678899999999999999999999999886667777764
No 98
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=57.07 E-value=37 Score=30.12 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=34.0
Q ss_pred EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006885 39 VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD 74 (627)
Q Consensus 39 tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG 74 (627)
++.|.|-+.-+..+|..+|.+++++|+++-.|-|.+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 999999999999999999999999998888898874
No 99
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=56.47 E-value=8 Score=44.71 Aligned_cols=39 Identities=36% Similarity=0.565 Sum_probs=31.4
Q ss_pred ccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 292 ILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 292 ILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
||.-=..++|=|.|||||++.+ .+..+++=.|||++---
T Consensus 317 If~~GffHaDPHPGNilv~~~~----~~~~~ivllDhGl~~~i 355 (538)
T KOG1235|consen 317 IFKTGFFHADPHPGNILVRPNP----EGDEEIVLLDHGLYAVI 355 (538)
T ss_pred HHhcCCccCCCCCCcEEEecCC----CCCccEEEEcccccccc
Confidence 6677789999999999999732 35567888999998763
No 100
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=56.17 E-value=29 Score=33.25 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=35.8
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCC
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVP 64 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP 64 (627)
.+.|.|-..+|.+..+.++++.||.+|-+.|..+.||+
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999995
No 101
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=54.38 E-value=5.9 Score=39.96 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=35.5
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..+--..++=|++.=.|||.+|||+... +| +++-||=|++|-
T Consensus 118 ~SlA~~s~~~YilglgDRh~~NIli~~~--~G-----~~~hIDfg~~~~ 159 (219)
T cd00142 118 SSLAGYSVAGYILGIGDRHPDNIMIDLD--TG-----KLFHIDFGFIFG 159 (219)
T ss_pred HHHHHHHHHHHHhccCCCCCccEEEECC--CC-----eEEEEeeHHhhC
Confidence 3566678889999999999999999884 34 399999999996
No 102
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=54.11 E-value=9.6 Score=47.56 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 290 IGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 290 IaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
-+|--|+++=+|||.+|||.++ .| |+..||-|=-|-
T Consensus 1191 ~cVaTYVLGIcDRHNDNIMl~~---sG-----HmFHIDFGKFLG 1226 (1639)
T KOG0905|consen 1191 WCVATYVLGICDRHNDNIMLTK---SG-----HMFHIDFGKFLG 1226 (1639)
T ss_pred ceeeeEeeecccccCCceEEec---cC-----cEEEEehhhhcc
Confidence 4677899999999999999999 56 499999987665
No 103
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=54.03 E-value=62 Score=29.06 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=40.3
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC-------CeEeccCC
Q 006885 29 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG-------DTVLKNDL 81 (627)
Q Consensus 29 qIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg-------Gk~LeDd~ 81 (627)
.|.|-..+|..-++.|+.+.|+.+|=+.+.++.+...+.-.-+|. .+.++|+.
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE 63 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHE 63 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchH
Confidence 467777899999999999999999999999997775544433333 44556654
No 104
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=53.21 E-value=21 Score=29.71 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=35.0
Q ss_pred EEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCC-CCeEEEE
Q 006885 32 VQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT-EERSLIY 72 (627)
Q Consensus 32 VKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~-eqQrLIf 72 (627)
|+.++|.+..++|+++.|+.++=++|..+.||.. +--.|.|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 6789999999999999999999999999999962 2236666
No 105
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=50.33 E-value=7.6 Score=39.56 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=35.6
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
..+--..++=|++.=.|||.+|||+... +|+ ++-||=|.+|-.
T Consensus 121 ~SlA~~s~~~YvlglgDRh~~NIli~~~--tG~-----v~hIDf~~~~~~ 163 (222)
T cd05164 121 RSTAVMSIVGYILGLGDRHLDNILIDRE--TGE-----VVHIDFGCIFEK 163 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCceEEEECC--CCc-----EEEEccHHhhcc
Confidence 3456677889999999999999999884 343 899999999974
No 106
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=49.99 E-value=1.1e+02 Score=26.26 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=44.7
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEeccC---CC----ccCCCCceee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLKND---LS----YVRHDSPLLL 92 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg--Gk~LeDd---~t----gI~~dStLhL 92 (627)
-+|-||..+|+.+.-....++||.+|.+-|+...+.+ ..-.|+-. -+.+.++ .+ |+...++|.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4799999999999999999999999999998765433 33455533 5666432 22 4555555544
No 107
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=49.52 E-value=27 Score=40.19 Aligned_cols=31 Identities=32% Similarity=0.595 Sum_probs=25.9
Q ss_pred eEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 295 IRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 295 iri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
-=.+=+|=|.|||+|.. +|+ ++-+|||+.=+
T Consensus 284 dgffHaDpHpGNi~v~~---~g~-----i~~lDfGi~g~ 314 (517)
T COG0661 284 DGFFHADPHPGNILVRS---DGR-----IVLLDFGIVGR 314 (517)
T ss_pred cCccccCCCccceEEec---CCc-----EEEEcCcceec
Confidence 34567999999999988 454 99999999877
No 108
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=48.97 E-value=8.7 Score=41.03 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=35.5
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..+--+.++=|++.=.|||.+|||+... +|+ ++.||=|.||-
T Consensus 199 ~s~A~~s~~~yilglgDRh~~NIli~~~--tG~-----v~hiDf~~~f~ 240 (307)
T cd05170 199 RSTAVMSMIGYVIGLGDRHLDNVLIDLK--TGE-----VVHIDYNVCFE 240 (307)
T ss_pred HHHHHHHHHHHHccCCCCCCccEEEEcC--CCc-----EEEEeeHhhhc
Confidence 4566788889999999999999999863 343 89999999985
No 109
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=48.75 E-value=94 Score=26.06 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=40.2
Q ss_pred eEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeeec
Q 006885 28 RRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGk--tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLvr 94 (627)
|.|+| +|+ ...++++...||.++-+++ +++.+.-.+..+|..+..+ +-+++++.|-++.
T Consensus 5 m~v~v---ng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~~-~~l~~gD~Veii~ 65 (70)
T PRK08364 5 IRVKV---IGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALED-DPVKDGDYVEVIP 65 (70)
T ss_pred EEEEE---eccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCCC-cCcCCCCEEEEEc
Confidence 44554 566 6678888888998887654 7775444556778776443 4488888888764
No 110
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=46.67 E-value=47 Score=34.47 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=42.9
Q ss_pred EEeccCCCHHHHHHHHHHHcCCCCCCeEE-EECC-----eEeccCCC-----ccCCCCceeeecc
Q 006885 42 MELDRSDNAHTVKRKLQLALDVPTEERSL-IYGD-----TVLKNDLS-----YVRHDSPLLLTRN 95 (627)
Q Consensus 42 ~eVe~sdTV~~VK~kIqekeGIP~eqQrL-IfgG-----k~LeDd~t-----gI~~dStLhLvr~ 95 (627)
....++.||..+|.|+....|.+++.-+| +|+| ..|.|+.. +..++--||++-.
T Consensus 17 kr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 34578999999999999999999999988 6775 35655442 6778889999863
No 111
>smart00455 RBD Raf-like Ras-binding domain.
Probab=46.14 E-value=65 Score=27.40 Aligned_cols=50 Identities=8% Similarity=-0.089 Sum_probs=41.2
Q ss_pred EEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC--eEeccC
Q 006885 31 FVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD--TVLKND 80 (627)
Q Consensus 31 fVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG--k~LeDd 80 (627)
.|=..+|+...+.|.|+.||.++=++|-++.|+.+++-.+...| +.|+-+
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~ 54 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLN 54 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecC
Confidence 45568999999999999999999999999999998887777643 455433
No 112
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=46.08 E-value=73 Score=26.37 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=40.0
Q ss_pred Cc-EEEEEeccCCCHHHHHHHHHHHcCC----CCCCeEEEECCeEeccCCCccCCCCceeee
Q 006885 37 GY-VLGMELDRSDNAHTVKRKLQLALDV----PTEERSLIYGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 37 Gk-tl~~eVe~sdTV~~VK~kIqekeGI----P~eqQrLIfgGk~LeDd~tgI~~dStLhLv 93 (627)
|+ ...++++...||.+|.+++.++.+- ....-.+..+|+....+ +-+++++.|.++
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~-~~l~~gD~v~i~ 74 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLD-TPLKDGDEVAII 74 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCC-cccCCCCEEEEe
Confidence 44 3677887789999999999987642 12234556678777643 458899999887
No 113
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=44.88 E-value=1.5e+02 Score=24.84 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=39.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEecc
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLKN 79 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg--Gk~LeD 79 (627)
-+|-||..+|+.+.-....++||++|.+=|.....- ...-+|+.. -+.|.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~ 55 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTD 55 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCC
Confidence 368999999999999999999999999988765443 244566543 566655
No 114
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=44.02 E-value=26 Score=41.80 Aligned_cols=42 Identities=7% Similarity=0.198 Sum_probs=38.5
Q ss_pred eCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCe
Q 006885 34 TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDT 75 (627)
Q Consensus 34 TltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk 75 (627)
+.++..+.+.|+++.|++.++.+|++..|||.+.|.|+|.|.
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~ 362 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGG 362 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecC
Confidence 347788999999999999999999999999999999999864
No 115
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=43.89 E-value=1.8e+02 Score=25.64 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC--eEec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD--TVLK 78 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG--k~Le 78 (627)
+-.+|-||-.+|+.+.-....++||++|..=|.. .+..++.-+|+.+= +.+.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~ 56 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLP 56 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCcccc
Confidence 4568999999999999999999999999998864 44455778888774 6664
No 116
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=39.80 E-value=1.5e+02 Score=25.57 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=40.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCC-CCCeEEE--ECCeEeccC
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVP-TEERSLI--YGDTVLKND 80 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP-~eqQrLI--fgGk~LeDd 80 (627)
-+|-||..+|+.+...+..++||++|.+=|....+.+ ...-.|+ |=.+.|.|+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~ 60 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDE 60 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCC
Confidence 4789999999999999999999999999888765322 1234565 446667654
No 117
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.76 E-value=19 Score=37.39 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=31.4
Q ss_pred EEeecCccccCCcCCCCC--------ccccccc-ccCCCCCHHHHHHHhcCC
Q 006885 323 LVPIDHGLCLPENLEDPY--------FEWIHWA-QASIPFSEDELEYINQLD 365 (627)
Q Consensus 323 L~pIDHGlclP~~~~d~~--------f~Wl~WP-qA~~PFS~e~l~yI~~LD 365 (627)
-++|.||+.+|+.+...+ +.|..=. .+|.||++..+..+..|.
T Consensus 107 ~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~ 158 (230)
T PHA02537 107 EYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLT 158 (230)
T ss_pred HHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 478999999998776433 4565443 448999998887776663
No 118
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=38.01 E-value=1.2e+02 Score=26.86 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=41.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEe
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVL 77 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg--Gk~L 77 (627)
-+|-||..+|..+.-....++++..|-.=|+. .|.+++.-.|+-+ =+.+
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~ 56 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKL 56 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCccc
Confidence 47999999999999999999999999887777 6778888888755 4445
No 119
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=36.96 E-value=83 Score=26.12 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=33.5
Q ss_pred EEEEeCCCcEEEEEec-cCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006885 30 VFVQTEMGYVLGMELD-RSDNAHTVKRKLQLALDVPTEERSLIYGD 74 (627)
Q Consensus 30 IfVKTltGktl~~eVe-~sdTV~~VK~kIqekeGIP~eqQrLIfgG 74 (627)
|.|+. .|.+..+.+. ++.|..+|+++|.++++++...-.|-|-+
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 44443 3678889998 99999999999999999876444555544
No 120
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=35.21 E-value=1e+02 Score=26.12 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=41.6
Q ss_pred eEEEEEeC------CC-cEEEEEeccCCCHHHHHHHHHHHcC-CCCC-Ce-EEEECCeEeccCCCccCCCCceeee
Q 006885 28 RRVFVQTE------MG-YVLGMELDRSDNAHTVKRKLQLALD-VPTE-ER-SLIYGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTl------tG-ktl~~eVe~sdTV~~VK~kIqekeG-IP~e-qQ-rLIfgGk~LeDd~tgI~~dStLhLv 93 (627)
|.|.||.- .| +...+++....||++|++.|.++.. +... .. .+..+|+...+ .+-++++++|-++
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-SAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-CcCcCCCCEEEEe
Confidence 56666642 45 5678888888999999999977651 1100 11 24456666543 3458888888776
No 121
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=34.80 E-value=33 Score=34.78 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=21.9
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHcCCCCC
Q 006885 37 GYVLGMELDRSDNAHTVKRKLQLALDVPTE 66 (627)
Q Consensus 37 Gktl~~eVe~sdTV~~VK~kIqekeGIP~e 66 (627)
|-.|.|-|.++.|...+|+||++++|++..
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 556888999999999999999999999853
No 122
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=34.70 E-value=1.3e+02 Score=34.38 Aligned_cols=17 Identities=35% Similarity=0.300 Sum_probs=12.5
Q ss_pred CCCcccccCCCccccee
Q 006885 565 GNMSVHEHLPASTSFVK 581 (627)
Q Consensus 565 ~~~~~~~~~~~~~~~~~ 581 (627)
..|...-.||-|+-||-
T Consensus 181 ~~Rp~tP~LPDSTDFVC 197 (458)
T PF10446_consen 181 KIRPGTPELPDSTDFVC 197 (458)
T ss_pred CCCCCCCCCCCcccccC
Confidence 33555566999999995
No 123
>PRK06437 hypothetical protein; Provisional
Probab=32.47 E-value=2.1e+02 Score=23.89 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=41.9
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeeec
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 94 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLvr 94 (627)
|+|. .|+.-.++++...||.+|= +.+|++++.--+..+|..+..+ +-++++..|-+++
T Consensus 5 ~~v~--g~~~~~~~i~~~~tv~dLL----~~Lgi~~~~vaV~vNg~iv~~~-~~L~dgD~Veiv~ 62 (67)
T PRK06437 5 IRVK--GHINKTIEIDHELTVNDII----KDLGLDEEEYVVIVNGSPVLED-HNVKKEDDVLILE 62 (67)
T ss_pred EEec--CCcceEEEcCCCCcHHHHH----HHcCCCCccEEEEECCEECCCc-eEcCCCCEEEEEe
Confidence 4554 5577888888888887664 3468887766777888888744 3488888888864
No 124
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=31.45 E-value=1.2e+02 Score=26.66 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=28.5
Q ss_pred EEeC-CCcEEEEEeccCCCHHHHHHHHHHHcCCC
Q 006885 32 VQTE-MGYVLGMELDRSDNAHTVKRKLQLALDVP 64 (627)
Q Consensus 32 VKTl-tGktl~~eVe~sdTV~~VK~kIqekeGIP 64 (627)
||.. .|.++.|.+.++.+...|+++|++++++.
T Consensus 3 vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~ 36 (82)
T cd06407 3 VKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLD 36 (82)
T ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4433 66789999999999999999999999986
No 125
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=31.33 E-value=82 Score=33.68 Aligned_cols=65 Identities=8% Similarity=0.087 Sum_probs=41.2
Q ss_pred eEEEEEeCCCc-EEE-EEeccCCCHHHHHHHHHHH-cCCCCCCeEEEEC----CeEeccCCC----ccCCCCceee
Q 006885 28 RRVFVQTEMGY-VLG-MELDRSDNAHTVKRKLQLA-LDVPTEERSLIYG----DTVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 28 mqIfVKTltGk-tl~-~eVe~sdTV~~VK~kIqek-eGIP~eqQrLIfg----Gk~LeDd~t----gI~~dStLhL 92 (627)
|.|++++-+++ .++ .+...+.||.+++.+|..+ ..+.+-.||+.+. |+.|.|+.+ +..+++||.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 45666665552 333 4566778999999666555 6777655655543 888887764 4555555554
No 126
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=31.22 E-value=24 Score=36.75 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=34.6
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..+--+.++=|+++=.|||.+|||+... .|. ++.||-|.+|-
T Consensus 144 ~s~A~~s~~gYilglgdRh~~nili~~~--tG~-----v~hiDf~~~f~ 185 (253)
T cd05163 144 YQLALLSFMTYILSINNRNPDKIFISRD--TGN-----VYQSDLLPSIN 185 (253)
T ss_pred HHHHHHHHHHHHhcCCCCCchhEEEEcC--CCc-----EEEEeeeeeec
Confidence 4566678888999999999999999874 343 89999998874
No 127
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=30.86 E-value=1.2e+02 Score=26.10 Aligned_cols=44 Identities=11% Similarity=-0.092 Sum_probs=38.3
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG 73 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg 73 (627)
+.|=..+|..-.+.|.++.||.++=.++-++-|+.++.-.|.+.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 44567899999999999999999999999999999888777554
No 128
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=30.86 E-value=2.3e+02 Score=25.85 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=45.8
Q ss_pred CeEEEEEeCC-CcEEEEEeccCCCHHHHHHHHHHH----cCC--CCC---------CeEEEECCeEeccCCC---ccCCC
Q 006885 27 KRRVFVQTEM-GYVLGMELDRSDNAHTVKRKLQLA----LDV--PTE---------ERSLIYGDTVLKNDLS---YVRHD 87 (627)
Q Consensus 27 ~mqIfVKTlt-Gktl~~eVe~sdTV~~VK~kIqek----eGI--P~e---------qQrLIfgGk~LeDd~t---gI~~d 87 (627)
-..|.|.... -..+++.|++++|+..|.+.+-.+ .+. ++. ....+++...|.+... ++..+
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~ 96 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNG 96 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcC
Confidence 3456666543 346999999999999998877665 221 221 2345666777777663 68889
Q ss_pred Cceeee
Q 006885 88 SPLLLT 93 (627)
Q Consensus 88 StLhLv 93 (627)
.++||+
T Consensus 97 ~~~~L~ 102 (108)
T smart00144 97 REPHLV 102 (108)
T ss_pred CCceEE
Confidence 999985
No 129
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=29.91 E-value=98 Score=30.00 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=40.5
Q ss_pred HHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHhhc
Q 006885 373 LRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREFRGHAEAPSELEFICIEARRLLEES 440 (627)
Q Consensus 373 Lr~~L~~lr~~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~~~~~A~~~~~~~ 440 (627)
|...+..|.+.|-+++.+... .|++..||+.+|.-. ++.+...+..|++.+.+.
T Consensus 105 l~~~l~~Lp~~~R~v~~L~~~-------~g~s~~EIA~~Lgis-------~~tV~~~l~RAr~~Lr~~ 158 (182)
T PRK12540 105 FRAALDKLPQDQREALILVGA-------SGFSYEDAAAICGCA-------VGTIKSRVNRARSKLSAL 158 (182)
T ss_pred HHHHHHhCCHHHHHHhhHHHH-------cCCCHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHH
Confidence 455555566877777655443 899999999998764 278889999999888654
No 130
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=29.46 E-value=2.3e+02 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=26.0
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHcCCC
Q 006885 37 GYVLGMELDRSDNAHTVKRKLQLALDVP 64 (627)
Q Consensus 37 Gktl~~eVe~sdTV~~VK~kIqekeGIP 64 (627)
|...+|.|.+++|+.+|=+.+.+++++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 6678999999999999999999999998
No 131
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=29.31 E-value=22 Score=37.93 Aligned_cols=143 Identities=19% Similarity=0.218 Sum_probs=61.4
Q ss_pred cccc--cceEEEEEeCCC--CeEEEEeCCCCCCCCCCCCCcccccccCCCCCCCccccCCcchhhhhhhhhcCCCCCCCc
Q 006885 154 VHSG--LGGAYYFRNCAG--ENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFREVAAYLLDYDHFANVP 229 (627)
Q Consensus 154 i~~G--SgGsYf~~~~~G--k~vaVFKP~DEEP~a~nNPk~f~~~~~g~~g~krg~lvGe~a~REVAAYLLD~~gf~~VP 229 (627)
+..| |||.||+..-+| ...+|.|+..- -..|+=||+|-.-.---||
T Consensus 33 s~~g~ns~gv~fv~~f~~~~~~avViK~s~t------------------------------~~~E~~~s~La~~Lgv~~P 82 (275)
T PF09192_consen 33 SEHGVNSGGVFFVATFSGSKEEAVVIKFSST------------------------------IQQEVFASELARWLGVPTP 82 (275)
T ss_dssp EEE-STTS-EEEEEETTE----EEEEE--TT------------------------------HHHHHHHHHHHHHCT----
T ss_pred hccccCCCCEEEEEEcCCCceEEEEEecCCc------------------------------hHHHHHHHHHHHHhCCCCC
Confidence 3445 999999997766 45888886411 2578888888752223466
Q ss_pred cceEEEeeccccccCCC-CCcccccccCC--------CCCcceeeecccCCCCCCCCCC-CCCC--------hhhhhhcc
Q 006885 230 CTALVKVTHEIFNINNG-VNGNKIRKRKQ--------VSKIASLQQFIPHDFDASDHGT-SSFP--------VAAVHRIG 291 (627)
Q Consensus 230 ~T~lV~~~hp~Fn~~~~-~~~~~~~~~~~--------p~KiGSlQ~FV~~d~~a~d~g~-~~F~--------v~evhKIa 291 (627)
--.+|+.+.+-|.--.. ....+...+.+ ..-.==++.||++. .-.++.. ..|. ..++-||.
T Consensus 83 ~~Rii~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~-~L~e~~~~~~f~~~~~~~~~~~~LG~ii 161 (275)
T PF09192_consen 83 QMRIIESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPGK-PLNELNHKEYFSPEKSGEKRLEQLGRII 161 (275)
T ss_dssp -EEEEESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---EE-ESTT--SS--SHHHHS-HHHHHHHHHHH
T ss_pred ceeeeecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC-CccccCcccccCCcchHHHHHHHHHhHH
Confidence 66666654433311000 00000000010 01111244566531 1122221 1232 36789999
Q ss_pred ccceEeecCCCCC------------CceEEeeecCCCCCcceEEEeecCcccc
Q 006885 292 ILDIRILNTDRHA------------GNLLVKKFEGTGSFGQVELVPIDHGLCL 332 (627)
Q Consensus 292 ILDiri~NtDRh~------------GNiLV~~~~~~g~~g~~~L~pIDHGlcl 332 (627)
+||+.++|.||-. .|||+...+. | ..+..||..++-
T Consensus 162 ~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~-~----~~~~~i~~~i~~ 209 (275)
T PF09192_consen 162 AFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPN-G----WYFSLIDSNITC 209 (275)
T ss_dssp HHHHHHT--SSS----SSS-S---GGGEEEESB---T----T-EEE-S-----
T ss_pred hhhhhhcCcccCcccccccCCCCChhheEEecccc-c----ceeeeccccccc
Confidence 9999999999966 5788876432 2 346777777653
No 132
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=29.25 E-value=1.9e+02 Score=24.09 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=33.5
Q ss_pred EEEEeCCCcEEE-EEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006885 30 VFVQTEMGYVLG-MELDRSDNAHTVKRKLQLALDVPTEERSLIYGD 74 (627)
Q Consensus 30 IfVKTltGktl~-~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG 74 (627)
|.+.- .|.+.. +.+.+..|...|+.+|+++++++...-.|-|.+
T Consensus 4 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 34433 334444 899999999999999999999986677887753
No 133
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.73 E-value=1.2e+02 Score=27.55 Aligned_cols=42 Identities=5% Similarity=0.058 Sum_probs=35.5
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEE
Q 006885 29 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSL 70 (627)
Q Consensus 29 qIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrL 70 (627)
+|-|--.+|.++.+.|..++|...|=+.++.+.|+|.+-+..
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 344445789999999999999999999999999999776544
No 134
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=26.84 E-value=1.1e+02 Score=27.74 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=35.5
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE--EC--Ce-EeccCC-C----ccCCCCceee-ec
Q 006885 38 YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI--YG--DT-VLKNDL-S----YVRHDSPLLL-TR 94 (627)
Q Consensus 38 ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI--fg--Gk-~LeDd~-t----gI~~dStLhL-vr 94 (627)
..++-.+...|||+.|+..+.+.+.| .++-||- |. +. .|.+.. | +|.++-+|-| .|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r 80 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER 80 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence 46788889999999999999999999 5778983 22 22 354432 3 6777777766 44
No 135
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=26.78 E-value=1.9e+02 Score=26.24 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=34.5
Q ss_pred EEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEE
Q 006885 32 VQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY 72 (627)
Q Consensus 32 VKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIf 72 (627)
++...|.+-.+.|+++.+-.++++++.+..+++.. ..|=|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 57789999999999999999999999999999855 45533
No 136
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=25.63 E-value=1.6e+02 Score=26.21 Aligned_cols=45 Identities=4% Similarity=0.027 Sum_probs=34.8
Q ss_pred EEEeC-CCcEEEEEecc--CCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC
Q 006885 31 FVQTE-MGYVLGMELDR--SDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL 81 (627)
Q Consensus 31 fVKTl-tGktl~~eVe~--sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~ 81 (627)
.||.. .|.++.|.+.+ .-+-.+|++.|+..++++ -|.=+-|+|+.
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~------~f~lKYlDde~ 49 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN------DIQIKYVDEEN 49 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC------cceeEEEcCCC
Confidence 34443 67789999999 558999999999999998 45556666654
No 137
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=25.46 E-value=97 Score=26.68 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeee
Q 006885 36 MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 36 tGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLv 93 (627)
.||.+.+- +|++++.....+++|++ .-+++-.+---+||..-|+++..|+++
T Consensus 18 ~GKvi~lP----~SleeLl~ia~~kfg~~--~~~v~~~dgaeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 18 AGKVIWLP----DSLEELLKIASEKFGFS--ATKVLNEDGAEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred CCEEEEcC----ccHHHHHHHHHHHhCCC--ceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence 37776663 79999999999999996 345554444445555569999988764
No 138
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=25.20 E-value=56 Score=39.26 Aligned_cols=41 Identities=29% Similarity=0.699 Sum_probs=30.1
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC--CcCC
Q 006885 284 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP--ENLE 337 (627)
Q Consensus 284 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP--~~~~ 337 (627)
|+.||||+.+- .|=+.+||||.. + |+++| -|-|||-- |+|.
T Consensus 742 iesVHkmGFIH-----RDiKPDNILIDr---d---GHIKL--TDFGLCTGfRWTHd 784 (1034)
T KOG0608|consen 742 IESVHKMGFIH-----RDIKPDNILIDR---D---GHIKL--TDFGLCTGFRWTHD 784 (1034)
T ss_pred HHHHHhcccee-----cccCccceEEcc---C---Cceee--eeccccccceeccc
Confidence 57899999653 578999999976 4 45555 59999955 4443
No 139
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=24.09 E-value=37 Score=45.32 Aligned_cols=43 Identities=26% Similarity=0.484 Sum_probs=37.0
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
..+..+.|..|+++=-|||+||||+... +| +++-||=|.||=.
T Consensus 1932 ~SlA~ySvigYiLglgDRH~~NIliD~~--sG-----~viHiDFg~il~~ 1974 (2105)
T COG5032 1932 RSLAVYSVIGYILGLGDRHPGNILIDRS--SG-----HVIHIDFGFILFN 1974 (2105)
T ss_pred HHHHHHHHHHHHccCCCcCCceEEEEcC--CC-----cEEEehHHHHHhc
Confidence 5778899999999999999999999773 34 4999999999873
No 140
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.08 E-value=1e+02 Score=22.67 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHhc
Q 006885 393 IFLKEAAAFGLCLADIGEMMSR 414 (627)
Q Consensus 393 ~lLk~~a~~gLtl~eIg~~m~R 414 (627)
.|+++|...|+|..||-.++.+
T Consensus 7 ~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHh
Confidence 5789999999999999888754
No 141
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=22.46 E-value=1.3e+02 Score=27.85 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.0
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCC
Q 006885 29 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 65 (627)
Q Consensus 29 qIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~ 65 (627)
.|+|=..+|.+-+|+|.-..|...||.++-+|+|++.
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 4788889999999999999999999999999999985
No 142
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=22.35 E-value=69 Score=33.81 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=25.4
Q ss_pred ccCCCHHHHHHHHHHHHhhhhHHHhhcc
Q 006885 582 LADMNEEEWAQYLEKFQKLLYPAFTNHK 609 (627)
Q Consensus 582 ~~~~~~~~w~~~~~~~~~~l~~~~~~~k 609 (627)
|..+++++|..||..|.++|..+|-.++
T Consensus 211 L~~L~e~~~~~FL~~Y~~~l~~aYP~~~ 238 (257)
T COG4106 211 LDRLDEEERQRFLDRYLALLAEAYPPRA 238 (257)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7889999999999999999999996663
No 143
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=22.05 E-value=1.7e+02 Score=26.07 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=33.2
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC
Q 006885 38 YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG 73 (627)
Q Consensus 38 ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg 73 (627)
-|+.|.|.+.-....|..+|.+++..+++.-.|-|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 478889999999999999999999999998899887
No 144
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=21.98 E-value=1.7e+02 Score=23.92 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=38.8
Q ss_pred EEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeee
Q 006885 30 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 30 IfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLv 93 (627)
|.|.|..|+... +..+.|+.++=+.|....+=- ---=..+|+...-+. -++++++|.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~--~~~A~Vng~~vdl~~-~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKR--AVAAKVNGQLVDLDH-PLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHC--EEEEEETTEEEETTS-BB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhh--eeEEEEcCEECCCCC-CcCCCCEEEEE
Confidence 678889999887 567889999999998776410 001134575554443 47788887664
No 145
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=21.90 E-value=1.8e+02 Score=26.04 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=43.8
Q ss_pred CeEEEEEeC-CCcEEEEEeccCCCHHHHHHHHHHH----cCCCC----------CCeEEEECCeEeccCCC---ccCCCC
Q 006885 27 KRRVFVQTE-MGYVLGMELDRSDNAHTVKRKLQLA----LDVPT----------EERSLIYGDTVLKNDLS---YVRHDS 88 (627)
Q Consensus 27 ~mqIfVKTl-tGktl~~eVe~sdTV~~VK~kIqek----eGIP~----------eqQrLIfgGk~LeDd~t---gI~~dS 88 (627)
.+.|.|... ....++|.|+.+.|+..|-.++-.+ .+.+. +.+..++++..|.+... ++..+-
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 477888888 6678999999999999998877766 22221 34556667777776653 567777
Q ss_pred ceeee
Q 006885 89 PLLLT 93 (627)
Q Consensus 89 tLhLv 93 (627)
.+||+
T Consensus 96 ~~~L~ 100 (106)
T PF00794_consen 96 DPHLV 100 (106)
T ss_dssp -EEEE
T ss_pred CcEEE
Confidence 77874
No 146
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=21.50 E-value=2.4e+02 Score=25.40 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=44.0
Q ss_pred EEEEEeC-CCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceee
Q 006885 29 RVFVQTE-MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLL 92 (627)
Q Consensus 29 qIfVKTl-tGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhL 92 (627)
.|.||.. .|.++.+.|.++-+-.++..+|.+++++. ..-.|-|.+- ++.+.|.++.-|.+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE---GD~iti~sq~DLd~ 62 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD---GDMITMGDQDDLDM 62 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC---CCCccccCHHHHHH
Confidence 3566666 68999999999999999999999999995 2334445554 44444666666655
No 147
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=21.39 E-value=4e+02 Score=22.41 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=38.0
Q ss_pred CCcE-EEEEeccC-CCHHHHHHHHHHHcC-CCC--CCeEEEECCeEeccCCCccCCCCceeee
Q 006885 36 MGYV-LGMELDRS-DNAHTVKRKLQLALD-VPT--EERSLIYGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 36 tGkt-l~~eVe~s-dTV~~VK~kIqekeG-IP~--eqQrLIfgGk~LeDd~tgI~~dStLhLv 93 (627)
.|+. ..+++... .||.+|++.|.++.+ +-. ....+..+++...++ +-++++++|.+.
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~-~~l~dgDevai~ 74 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDD-ALLNEGDEVAFI 74 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCC-cCcCCCCEEEEe
Confidence 4554 57888876 899999999998864 100 112445667666543 458888888776
No 148
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=20.76 E-value=98 Score=33.56 Aligned_cols=40 Identities=35% Similarity=0.733 Sum_probs=29.4
Q ss_pred CceeeccCC-CCchhHHHHHHHHHHHHHcCCCCcccccccceEEEEEeCCC
Q 006885 120 GPIEILGYS-NHFSTAKQLVKEIVKAMKKGIDPIPVHSGLGGAYYFRNCAG 169 (627)
Q Consensus 120 ~~ie~l~~~-~~~~~~~~lv~~v~~ai~~G~~P~~i~~GSgGsYf~~~~~G 169 (627)
+.+-++|.. -..-....||+++..||.. +|||||.+..+|
T Consensus 114 G~~~L~G~gvyLv~~~a~LvqdIi~AlNr----------TGGSyy~~G~ng 154 (305)
T PF04639_consen 114 GYVTLLGVGVYLVFSAATLVQDIIDALNR----------TGGSYYYRGNNG 154 (305)
T ss_pred CeEEEEeeEEEEEEEHHHHHHHHHHHHHh----------CCCeeEEEccCC
Confidence 344455532 2235578999999999986 899999998876
No 149
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=20.70 E-value=2.6e+02 Score=24.65 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=37.9
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE-ECCeEeccCCCccCCCCceeee
Q 006885 37 GYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI-YGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 37 Gktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI-fgGk~LeDd~tgI~~dStLhLv 93 (627)
+..+.+.+++..||++| -+.+|||..+=.+| -+|+...=+. -++++..|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~----IEsLGVP~tEV~~i~vNG~~v~~~~-~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDV----IESLGVPHTEVGLILVNGRPVDFDY-RLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHH----HHHcCCChHHeEEEEECCEECCCcc-cCCCCCEEEEE
Confidence 46788889999888765 45699998887665 4777765443 37788887774
Done!