Query 006885
Match_columns 627
No_of_seqs 291 out of 660
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:32:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3plu_A Ubiquitin-like modifier 99.7 2.3E-17 7.8E-22 144.4 8.9 70 24-93 18-91 (93)
2 3phx_B Ubiquitin-like protein 99.7 3.4E-16 1.2E-20 129.2 9.4 69 26-94 3-75 (79)
3 1uh6_A Ubiquitin-like 5; beta- 99.6 2.9E-16 9.9E-21 139.0 9.3 68 27-94 28-99 (100)
4 3dbh_I NEDD8; cell cycle, acti 99.6 1.6E-15 5.4E-20 126.8 9.3 76 19-94 4-83 (88)
5 2kk8_A Uncharacterized protein 99.6 1.7E-15 5.9E-20 128.5 9.2 69 26-94 9-82 (84)
6 4dwf_A HLA-B-associated transc 99.6 1.8E-15 6.1E-20 127.9 8.8 69 25-94 3-75 (90)
7 2lxa_A Ubiquitin-like protein 99.6 7E-16 2.4E-20 132.8 6.4 66 28-93 2-75 (87)
8 2faz_A Ubiquitin-like containi 99.6 2E-15 6.9E-20 124.0 8.8 69 26-94 1-75 (78)
9 4fbj_B NEDD8; effector-HOST ta 99.6 2.5E-15 8.6E-20 127.7 9.2 67 28-94 1-71 (88)
10 4eew_A Large proline-rich prot 99.6 3.2E-15 1.1E-19 125.9 8.6 70 24-94 14-87 (88)
11 3v6c_B Ubiquitin; structural g 99.6 4.7E-15 1.6E-19 126.2 9.8 72 23-94 13-88 (91)
12 2uyz_B Small ubiquitin-related 99.6 3.1E-15 1E-19 123.4 8.3 68 27-94 3-74 (79)
13 1wyw_B Ubiquitin-like protein 99.6 3.4E-15 1.1E-19 129.4 8.9 71 24-94 18-92 (97)
14 2wyq_A HHR23A, UV excision rep 99.6 9E-15 3.1E-19 121.7 9.7 70 25-94 3-79 (85)
15 2hj8_A Interferon-induced 17 k 99.6 6.3E-15 2.2E-19 125.1 8.1 69 26-94 3-75 (88)
16 1wgh_A Ubiquitin-like 3, HCG-1 99.6 2.7E-14 9.2E-19 129.3 12.6 71 24-94 13-97 (116)
17 4a20_A Ubiquitin-like protein 99.5 6.8E-15 2.3E-19 129.2 8.1 71 24-94 16-94 (98)
18 1uel_A HHR23B, UV excision rep 99.5 1.8E-14 6.3E-19 124.0 10.6 67 28-94 1-74 (95)
19 1wy8_A NP95-like ring finger p 99.5 2E-14 6.9E-19 121.0 10.2 70 25-94 5-80 (89)
20 1ndd_A NEDD8, protein (ubiquit 99.5 1.4E-14 4.9E-19 117.0 8.8 67 28-94 1-71 (76)
21 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 1.8E-14 6.3E-19 120.6 9.7 70 25-94 5-78 (87)
22 3m62_B UV excision repair prot 99.5 7.5E-15 2.6E-19 129.4 7.2 67 28-94 2-72 (106)
23 2dzi_A Ubiquitin-like protein 99.5 3.5E-14 1.2E-18 116.7 9.8 70 25-94 5-78 (81)
24 2kan_A Uncharacterized protein 99.5 2.9E-14 1E-18 123.3 9.8 70 24-94 12-86 (94)
25 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 2.9E-14 1E-18 121.6 9.4 68 27-94 1-72 (96)
26 1sif_A Ubiquitin; hydrophobic 99.5 2.3E-14 8E-19 121.7 8.7 69 26-94 8-80 (88)
27 4hcn_B Polyubiquitin, ubiquiti 99.5 2E-14 6.9E-19 124.4 8.4 71 24-94 19-93 (98)
28 3n3k_B Ubiquitin; hydrolase, p 99.5 2.3E-14 7.8E-19 118.9 7.8 68 27-94 3-74 (85)
29 2bwf_A Ubiquitin-like protein 99.5 4E-14 1.4E-18 115.3 9.1 66 28-94 5-74 (77)
30 3mtn_B UBA80, ubcep1, ubiquiti 99.5 4.3E-14 1.5E-18 117.0 9.1 68 27-94 3-74 (85)
31 3a9j_A Ubiquitin; protein comp 99.5 4.6E-14 1.6E-18 114.0 8.9 67 28-94 1-71 (76)
32 2fnj_B Transcription elongatio 99.5 1.9E-14 6.6E-19 130.8 7.2 67 28-94 1-79 (118)
33 1ttn_A DC-UBP, dendritic cell- 99.5 3.6E-14 1.2E-18 124.8 8.7 71 24-94 20-94 (106)
34 2l7r_A Ubiquitin-like protein 99.5 3.6E-14 1.2E-18 122.1 8.3 69 24-94 16-88 (93)
35 3rt3_B Ubiquitin-like protein 99.5 4.7E-14 1.6E-18 130.6 9.6 71 24-94 78-152 (159)
36 1v2y_A 3300001G02RIK protein; 99.5 2.2E-14 7.4E-19 127.8 6.6 68 27-94 7-94 (105)
37 1se9_A Ubiquitin family; ubiqu 99.5 3.8E-14 1.3E-18 130.2 8.3 75 20-94 9-101 (126)
38 2kdb_A Homocysteine-responsive 99.5 3.3E-14 1.1E-18 125.0 7.5 70 24-93 20-99 (99)
39 1wgd_A Homocysteine-responsive 99.5 6.3E-14 2.1E-18 119.9 8.5 70 25-94 5-84 (93)
40 3b1l_X E3 ubiquitin-protein li 99.2 2.9E-15 1E-19 122.2 0.0 67 28-94 1-71 (76)
41 1wx8_A Riken cDNA 4931431F19; 99.5 1.3E-13 4.5E-18 118.1 10.3 70 24-94 14-87 (96)
42 3l0w_B Monoubiquitinated proli 99.5 8E-14 2.8E-18 132.7 9.4 67 28-94 1-71 (169)
43 2xzm_9 RPS31E; ribosome, trans 99.5 4.4E-15 1.5E-19 144.6 0.0 65 28-93 1-65 (189)
44 3vdz_A Ubiquitin-40S ribosomal 99.5 1.2E-13 4.3E-18 122.6 9.2 69 26-94 34-106 (111)
45 1yx5_B Ubiquitin; proteasome, 99.5 1.4E-13 4.7E-18 118.6 9.0 67 28-94 1-71 (98)
46 2gow_A HCG-1 protein, ubiquiti 99.5 8E-14 2.7E-18 127.6 7.8 71 24-94 14-98 (125)
47 3u30_A Ubiquitin, linear DI-ub 99.5 1.5E-13 5E-18 129.4 9.3 70 25-94 18-91 (172)
48 1wju_A NEDD8 ultimate buster-1 99.5 1.7E-13 5.8E-18 121.3 9.1 74 21-94 9-90 (100)
49 4dbg_A Ranbp-type and C3HC4-ty 99.4 1.8E-13 6.1E-18 122.2 9.2 68 27-94 24-98 (105)
50 4ajy_B Transcription elongatio 99.4 9.1E-14 3.1E-18 126.4 7.1 67 28-94 1-79 (118)
51 2klc_A Ubiquilin-1; ubiquitin- 99.4 3.7E-13 1.3E-17 117.7 10.7 70 24-94 22-95 (101)
52 1yqb_A Ubiquilin 3; structural 99.4 2.6E-13 8.7E-18 118.6 9.6 70 24-94 19-92 (100)
53 3q3f_A Ribonuclease/ubiquitin 99.4 2.1E-13 7.2E-18 132.7 9.8 67 28-94 106-176 (189)
54 1v5o_A 1700011N24RIK protein; 99.4 4.2E-13 1.4E-17 117.2 10.2 70 25-94 5-83 (102)
55 1wx7_A Ubiquilin 3; ubiquitin- 99.4 5.6E-13 1.9E-17 116.8 10.8 70 24-94 14-87 (106)
56 3u30_A Ubiquitin, linear DI-ub 99.4 2.4E-13 8.3E-18 127.9 9.1 72 23-94 92-167 (172)
57 2kdi_A Ubiquitin, vacuolar pro 99.4 3.3E-13 1.1E-17 120.6 9.1 70 25-94 7-80 (114)
58 1j8c_A Ubiquitin-like protein 99.4 9.9E-13 3.4E-17 119.6 12.1 69 25-94 30-102 (125)
59 2dzm_A FAS-associated factor 1 99.4 4.3E-13 1.5E-17 118.4 9.4 68 26-94 7-80 (100)
60 3rt3_B Ubiquitin-like protein 99.4 3E-13 1E-17 125.2 8.7 67 28-94 3-75 (159)
61 2ojr_A Ubiquitin; lanthide-bin 99.4 8.3E-13 2.8E-17 116.9 10.8 74 21-94 29-106 (111)
62 1we6_A Splicing factor, putati 99.4 3.8E-13 1.3E-17 119.0 8.3 71 24-94 24-102 (111)
63 1wia_A Hypothetical ubiquitin- 99.4 5.3E-13 1.8E-17 114.3 8.8 67 25-94 5-76 (95)
64 3u5e_m 60S ribosomal protein L 99.4 2.7E-14 9.2E-19 129.6 0.0 67 28-94 1-71 (128)
65 3m63_B Ubiquitin domain-contai 99.4 1.4E-13 4.7E-18 120.7 4.4 71 23-94 24-98 (101)
66 1x1m_A Ubiquitin-like protein 99.4 1.4E-12 4.7E-17 115.0 9.9 70 25-94 10-98 (107)
67 1v5t_A 8430435I17RIK protein; 99.4 9.7E-13 3.3E-17 112.5 7.6 68 26-94 6-81 (90)
68 3b08_A Polyubiquitin-C, ubiqui 99.4 1.9E-12 6.6E-17 117.4 9.8 72 23-94 72-147 (152)
69 3u5c_f 40S ribosomal protein S 99.4 7E-14 2.4E-18 131.7 0.0 66 28-93 1-70 (152)
70 1wgg_A Ubiquitin carboxyl-term 99.3 1.4E-12 4.7E-17 113.3 8.1 67 26-94 6-77 (96)
71 3b08_A Polyubiquitin-C, ubiqui 99.3 1.8E-12 6.2E-17 117.6 8.9 67 28-94 1-71 (152)
72 1wxv_A BAG-family molecular ch 99.3 4.2E-12 1.4E-16 108.1 9.5 68 26-94 6-83 (92)
73 2kd0_A LRR repeats and ubiquit 99.3 3.3E-12 1.1E-16 108.2 8.3 68 27-94 11-82 (85)
74 2dzj_A Synaptic glycoprotein S 99.3 9.5E-13 3.3E-17 113.0 5.0 66 27-92 10-85 (88)
75 1v86_A DNA segment, CHR 7, way 99.3 2.7E-12 9.2E-17 111.0 7.3 75 18-94 8-86 (95)
76 1we7_A SF3A1 protein; structur 99.3 1E-11 3.6E-16 110.5 10.5 71 24-94 22-106 (115)
77 2kjr_A CG11242; UBL, ubiquitin 99.3 8.2E-12 2.8E-16 108.9 9.4 71 24-94 12-94 (95)
78 3ai5_A Yeast enhanced green fl 99.2 1.5E-11 5E-16 127.7 9.6 71 24-94 230-304 (307)
79 2daf_A FLJ35834 protein; hypot 99.2 6.5E-11 2.2E-15 107.6 12.4 67 28-94 16-87 (118)
80 1wf9_A NPL4 family protein; be 99.2 1.6E-11 5.5E-16 108.4 6.6 66 28-94 8-93 (107)
81 1oqy_A HHR23A, UV excision rep 99.2 1.7E-11 5.8E-16 129.9 6.9 69 26-94 6-82 (368)
82 2kj6_A Tubulin folding cofacto 99.2 6.5E-11 2.2E-15 103.8 8.6 71 24-94 11-94 (97)
83 2io1_B Small ubiquitin-related 99.1 8.9E-11 3E-15 102.2 8.8 70 25-94 5-78 (94)
84 4b6w_A Tubulin-specific chaper 99.1 4E-11 1.4E-15 102.7 5.4 64 31-94 8-82 (86)
85 2kzr_A Ubiquitin thioesterase 99.0 2.5E-10 8.6E-15 96.6 6.5 66 28-94 1-76 (86)
86 1wm3_A Ubiquitin-like protein 99.0 6.9E-10 2.3E-14 91.5 8.7 66 28-93 2-71 (72)
87 1v6e_A Cytoskeleton-associated 99.0 4E-10 1.4E-14 97.1 7.2 67 28-94 8-86 (95)
88 3a4r_A Nfatc2-interacting prot 99.0 1.8E-09 6.1E-14 90.8 10.2 70 24-93 4-78 (79)
89 1t0y_A Tubulin folding cofacto 99.0 6.8E-10 2.3E-14 100.2 7.9 70 25-94 4-85 (122)
90 2io0_B Small ubiquitin-related 99.0 1.2E-09 4E-14 94.8 8.8 70 25-94 3-76 (91)
91 2k8h_A Small ubiquitin protein 98.9 2.3E-09 7.9E-14 96.2 8.7 79 16-94 15-97 (110)
92 2d07_B Ubiquitin-like protein 98.9 3.4E-09 1.2E-13 91.8 8.9 71 24-94 14-88 (93)
93 3shq_A UBLCP1; phosphatase, hy 98.9 1.1E-09 3.7E-14 114.0 6.3 67 27-94 5-78 (320)
94 1wz0_A Ubiquitin-like protein 98.9 3.4E-09 1.2E-13 94.1 8.4 71 24-94 21-95 (104)
95 2eke_C Ubiquitin-like protein 98.9 7.7E-09 2.6E-13 92.3 9.4 71 23-94 27-101 (106)
96 1wjn_A Tubulin-folding protein 98.5 3.2E-07 1.1E-11 79.1 7.8 73 22-94 4-91 (97)
97 3kyd_D Small ubiquitin-related 98.3 2.8E-06 9.7E-11 77.0 9.5 70 25-94 38-111 (115)
98 3pge_A SUMO-modified prolifera 98.2 4.1E-06 1.4E-10 82.3 9.0 73 21-94 23-99 (200)
99 4efo_A Serine/threonine-protei 98.1 4.4E-06 1.5E-10 73.3 7.6 44 35-78 21-64 (94)
100 3tix_A Ubiquitin-like protein 98.0 1E-05 3.5E-10 79.5 7.5 78 16-94 46-127 (207)
101 3v7o_A Minor nucleoprotein VP3 97.6 6.7E-06 2.3E-10 81.7 0.0 75 19-94 13-91 (227)
102 3uf8_A Ubiquitin-like protein 97.6 0.00024 8.1E-09 69.6 9.5 75 19-94 13-91 (209)
103 2pjh_A Protein NPL4, nuclear p 97.4 8.7E-05 3E-09 62.6 3.9 67 26-93 3-78 (80)
104 3akj_A CTKA; protein kinase, t 96.8 0.00024 8.3E-09 73.8 1.1 49 285-336 139-188 (325)
105 3ix6_A TS, tsase, thymidylate 96.8 0.00019 6.5E-09 76.1 0.0 73 21-94 15-91 (360)
106 1cja_A Protein (actin-fragmin 96.7 0.00095 3.2E-08 70.4 4.4 140 152-334 75-238 (342)
107 2jxx_A Nfatc2-interacting prot 96.6 0.012 4.1E-07 51.7 9.7 70 23-92 21-95 (97)
108 4da1_A Protein phosphatase 1K, 96.4 0.00053 1.8E-08 72.2 0.0 74 20-94 23-100 (389)
109 2al3_A TUG long isoform; TUG U 96.0 0.021 7.2E-07 49.8 8.1 70 25-94 7-80 (90)
110 2kc2_A Talin-1, F1; FERM, adhe 95.9 0.016 5.4E-07 53.5 7.1 38 29-66 13-50 (128)
111 2l76_A Nfatc2-interacting prot 94.9 0.13 4.5E-06 45.2 9.2 69 25-94 19-91 (95)
112 3goe_A DNA repair protein RAD6 93.7 0.32 1.1E-05 41.6 8.7 67 27-93 9-80 (82)
113 3tpd_A Serine/threonine-protei 85.3 0.9 3.1E-05 48.5 5.7 45 285-333 293-338 (440)
114 3qx1_A FAS-associated factor 1 82.0 3.8 0.00013 34.0 7.0 66 26-92 6-80 (84)
115 1oey_A P67-PHOX, neutrophil cy 73.8 8.6 0.0003 32.9 6.9 46 27-74 5-50 (83)
116 2kvr_A Ubiquitin carboxyl-term 72.6 2.8 9.5E-05 38.3 3.8 33 39-71 57-89 (130)
117 1wj4_A KIAA0794 protein; UBX d 69.6 31 0.0011 30.9 10.0 69 25-94 41-118 (124)
118 2dzk_A UBX domain-containing p 68.1 42 0.0014 29.3 10.3 70 25-94 11-89 (109)
119 2l32_A Small archaeal modifier 66.3 17 0.00057 29.9 6.9 61 28-94 1-61 (74)
120 4e71_A Plexin-B2, MM1; transme 65.9 17 0.00059 32.7 7.4 59 36-94 22-109 (111)
121 3ls8_A Phosphatidylinositol 3- 65.8 1.7 5.9E-05 49.1 1.1 40 286-333 463-502 (614)
122 1wgr_A Growth factor receptor- 61.2 30 0.001 30.5 7.9 72 23-94 5-91 (100)
123 2x6h_A GH13170P, VPS34, phosph 60.6 2.5 8.4E-05 48.5 1.1 41 285-333 536-576 (696)
124 1e7u_A Phosphatidylinositol 3- 60.1 8 0.00027 45.9 5.3 40 286-333 790-829 (961)
125 3hhm_A Phosphatidylinositol-4, 59.3 2.9 9.8E-05 50.2 1.4 40 286-333 923-962 (1091)
126 4eut_A Serine/threonine-protei 56.7 11 0.00039 38.4 5.2 42 36-77 320-361 (396)
127 2r2o_A Plexin-B1; effector dom 56.3 36 0.0012 31.7 7.9 57 38-94 41-127 (138)
128 3h6n_A Plexin-D1; structural g 54.6 50 0.0017 30.4 8.5 59 36-94 15-103 (127)
129 2cr5_A Reproduction 8; UBX dom 53.3 40 0.0014 29.3 7.5 69 25-94 21-97 (109)
130 2wxf_A Phosphatidylinositol-4, 51.0 4 0.00014 48.3 0.8 40 286-333 774-813 (940)
131 2y3a_A Phosphatidylinositol-4, 48.9 5.1 0.00017 48.2 1.2 39 287-333 927-965 (1092)
132 3jyu_A Ubiquitin carboxyl-term 45.7 38 0.0013 33.2 6.8 56 39-94 153-220 (231)
133 4a3p_A Ubiquitin carboxyl-term 45.6 43 0.0015 32.5 7.1 58 38-95 140-209 (217)
134 3rpf_C Molybdopterin convertin 44.7 57 0.002 26.1 6.6 52 41-93 15-68 (74)
135 2ylm_A Ubiquitin carboxyl-term 44.6 14 0.00047 40.8 3.7 33 39-71 37-69 (530)
136 1ryj_A Unknown; beta/alpha pro 42.6 1.2E+02 0.0042 24.0 8.2 62 27-94 4-65 (70)
137 1vjk_A Molybdopterin convertin 41.7 1.2E+02 0.0042 25.4 8.5 37 25-61 7-50 (98)
138 3ivf_A Talin-1; FERM domain, c 40.0 70 0.0024 32.9 8.0 65 29-94 5-83 (371)
139 2bps_A YUKD protein; ubiquitin 39.9 56 0.0019 27.6 5.9 63 29-91 6-79 (81)
140 1s3s_G P47 protein; AAA ATPase 39.5 89 0.003 28.0 7.6 55 26-80 51-108 (127)
141 1vd2_A Protein kinase C, IOTA 38.4 1.2E+02 0.0041 26.0 7.9 46 30-75 7-54 (89)
142 4e74_A Plexin-A4; RBD, structu 35.9 82 0.0028 28.5 6.7 58 37-94 26-113 (117)
143 2kmm_A Guanosine-3',5'-BIS(dip 33.6 65 0.0022 25.1 5.2 62 28-94 1-62 (73)
144 1b0n_B Protein (SINI protein); 32.4 35 0.0012 27.3 3.3 24 393-416 17-40 (57)
145 3qij_A Protein 4.1; cytoskelet 30.9 55 0.0019 32.9 5.3 41 25-65 15-55 (296)
146 4gmv_A RAS-associated and plec 30.6 1.1E+02 0.0038 31.2 7.6 55 28-82 32-93 (281)
147 3kuz_A Plexin-C1; structural g 30.2 2.1E+02 0.0072 26.3 8.5 29 38-66 39-71 (126)
148 3qa8_A MGC80376 protein; kinas 28.5 34 0.0012 38.9 3.6 47 34-80 318-365 (676)
149 1ef1_A Moesin; membrane, FERM 27.9 69 0.0024 31.6 5.4 37 28-65 2-38 (294)
150 1tyg_B YJBS; alpha beta barrel 27.1 97 0.0033 26.3 5.4 64 22-94 15-82 (87)
151 1h4r_A Merlin; FERM, neurofibr 25.6 84 0.0029 31.4 5.6 40 25-65 20-59 (314)
152 1f0z_A THis protein; ubiquitin 25.4 1.3E+02 0.0045 23.4 5.6 54 35-94 5-61 (66)
153 1q1o_A Cell division control p 25.1 85 0.0029 27.6 4.8 50 25-74 3-64 (98)
154 3hug_A RNA polymerase sigma fa 25.0 78 0.0027 25.8 4.4 54 371-438 29-82 (92)
155 2kgl_A Mesoderm development ca 24.0 1E+02 0.0035 30.3 5.5 28 575-602 75-103 (195)
156 3po0_A Small archaeal modifier 23.8 2.5E+02 0.0087 22.7 7.3 57 36-93 15-83 (89)
157 3ivf_A Talin-1; FERM domain, c 22.7 1E+02 0.0035 31.7 5.7 39 27-65 85-123 (371)
158 3tca_A Amyloid beta A4 precurs 20.9 1.9E+02 0.0065 27.9 6.9 42 28-69 35-76 (291)
No 1
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.70 E-value=2.3e-17 Score=144.43 Aligned_cols=70 Identities=24% Similarity=0.277 Sum_probs=65.7
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
.+.-|||||||.+|++++++|++++||++||++|++++|||+++|||+|+|++|+|+.+ +|++++||||.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 44569999999999999999999999999999999999999999999999999999986 99999999995
No 2
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=129.17 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
..|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+-
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999999999875 999999999963
No 3
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=2.9e-16 Score=139.01 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=65.4
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
-|+|||||.+|++++++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|++++||||+.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999999999986 899999999974
No 4
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.61 E-value=1.6e-15 Score=126.84 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=69.3
Q ss_pred ccccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 19 RMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 19 ~~~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+........|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 4 ~~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 4 RASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp CCCSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred CCCCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 3344456679999999999999999999999999999999999999999999999999999875 999999999963
No 5
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=1.7e-15 Score=128.52 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=65.7
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeE-eccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTV-LKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~-LeDd~t----gI~~dStLhLvr 94 (627)
.-|+|||||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++ |+|+.+ +|+++++|||+.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999999 999886 999999999964
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.60 E-value=1.8e-15 Score=127.93 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=65.3
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+..|+||||+.+|+++.|+|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +| ++++|||+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~ 75 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 75 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEe
Confidence 4569999999999999999999999999999999999999999999999999999875 89 899999975
No 7
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=7e-16 Score=132.75 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=62.7
Q ss_pred eEEEEEeCCCcEEEEEec--cCCCHHHHHHHH-HHHcCCCCCCeEEEECCeEeccCCC----cc-CCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELD--RSDNAHTVKRKL-QLALDVPTEERSLIYGDTVLKNDLS----YV-RHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe--~sdTV~~VK~kI-qekeGIP~eqQrLIfgGk~LeDd~t----gI-~~dStLhLv 93 (627)
|+|||||++|++++++|+ +++||..||++| ++++|||+++|||||+|++|+|+.+ +| +++++|||+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEE
Confidence 899999999999999877 999999999999 9999999999999999999999985 89 799999995
No 8
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2e-15 Score=124.01 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=64.6
Q ss_pred CCeEEEEEeCCCcEE-EEE-eccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVL-GME-LDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl-~~e-Ve~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|.|+|+|||.+|+++ .++ |++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 569999999999996 999 999999999999999999999999999999999998875 899999999974
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.59 E-value=2.5e-15 Score=127.69 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=64.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999875 999999999963
No 10
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=125.92 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=65.3
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+..|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +| ++++|||+.
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999875 89 899999974
No 11
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.58 E-value=4.7e-15 Score=126.17 Aligned_cols=72 Identities=26% Similarity=0.440 Sum_probs=67.7
Q ss_pred ccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 23 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 23 ~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.....|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 356679999999999999999999999999999999999999999999999999999875 999999999964
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.58 E-value=3.1e-15 Score=123.42 Aligned_cols=68 Identities=6% Similarity=0.113 Sum_probs=65.4
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.|+|+|||.+|+++.++|++++||..||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 49999999999999999999999999999999999999999999999999999986 999999999964
No 13
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.58 E-value=3.4e-15 Score=129.40 Aligned_cols=71 Identities=6% Similarity=0.109 Sum_probs=67.2
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+..|+|+|||.+|+++.|+|++++||..||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 56679999999999999999999999999999999999999999999999999999986 999999999974
No 14
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.56 E-value=9e-15 Score=121.74 Aligned_cols=70 Identities=13% Similarity=0.278 Sum_probs=65.5
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHH---cCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLA---LDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqek---eGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+.|+|+||+.+|+++.++|++++||.+||++|+++ +|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEE
Confidence 357999999999999999999999999999999998 8999999999999999999875 899999999974
No 15
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.55 E-value=6.3e-15 Score=125.07 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=65.7
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+.|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~ 75 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEE
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 359999999999999999999999999999999999999999999999999999875 899999999974
No 16
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=2.7e-14 Score=129.30 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=64.1
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHH------HcCC--CCCCeEEEECCeEeccCCC----ccCCC--Cc
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQL------ALDV--PTEERSLIYGDTVLKNDLS----YVRHD--SP 89 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqe------keGI--P~eqQrLIfgGk~LeDd~t----gI~~d--St 89 (627)
+.+.|+|+|||++|++++|+|++++||..||++|++ ++|+ |+++|||||.|++|+|+.+ +|+.+ +|
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 667899999999999999999999999999999999 7786 6999999999999999975 77544 78
Q ss_pred eeeec
Q 006885 90 LLLTR 94 (627)
Q Consensus 90 LhLvr 94 (627)
||||.
T Consensus 93 lhLvl 97 (116)
T 1wgh_A 93 MHLVA 97 (116)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99974
No 17
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.55 E-value=6.8e-15 Score=129.24 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=63.4
Q ss_pred cCCCeEEEEEeCCCcEEEE--EeccCCCHHHHHHHH-HHHcCCCCCCeEEEECCeEeccCCC----cc-CCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGM--ELDRSDNAHTVKRKL-QLALDVPTEERSLIYGDTVLKNDLS----YV-RHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~--eVe~sdTV~~VK~kI-qekeGIP~eqQrLIfgGk~LeDd~t----gI-~~dStLhLvr 94 (627)
....|+|+|||++|+++++ +|++++||.+||++| +++.|+|+++|||||+|++|+|+.+ +| +++++|||+-
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 4567999999999998777 556999999999999 8889999999999999999999875 89 9999999964
No 18
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.8e-14 Score=123.99 Aligned_cols=67 Identities=16% Similarity=0.327 Sum_probs=64.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHH---cCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLA---LDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqek---eGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||.+|+++.++|++++||.+||++|+++ +|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 899999999999999999999999999999999 8999999999999999999875 899999999964
No 19
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=2e-14 Score=121.00 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=65.5
Q ss_pred CCCeEEEEEeCCC-cEEEE-EeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMG-YVLGM-ELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltG-ktl~~-eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+..|+|+||+.+| +++.+ +|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 80 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLV 80 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 4569999999999 79999 5999999999999999999999999999999999999875 999999999964
No 20
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.54 E-value=1.4e-14 Score=117.00 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=64.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999998875 899999999964
No 21
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.8e-14 Score=120.57 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=66.4
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
...|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEE
Confidence 4579999999999999999999999999999999999999999999999999999875 899999999964
No 22
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.5e-15 Score=129.43 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=63.7
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||.+|+++.|+|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999874 999999999974
No 23
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=116.71 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=65.9
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+..|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999999999998875 899999999964
No 24
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.52 E-value=2.9e-14 Score=123.30 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=65.7
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-CC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-LS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd-~t----gI~~dStLhLvr 94 (627)
....|+||||+.+| ++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+ .+ +|+++++|||+.
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEE
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 45679999999998 999999999999999999999999999999999999999999 65 999999999974
No 25
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.52 E-value=2.9e-14 Score=121.60 Aligned_cols=68 Identities=26% Similarity=0.454 Sum_probs=64.5
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.|+|+||+.+|+++.|+|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 39999999999999999999999999999999999999999999999999999875 899999999963
No 26
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=2.3e-14 Score=121.72 Aligned_cols=69 Identities=23% Similarity=0.420 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
-.|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 369999999999999999999999999999999999999999999999999998875 899999999964
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2e-14 Score=124.39 Aligned_cols=71 Identities=25% Similarity=0.445 Sum_probs=65.3
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
....|+|+||+.+|+++.|+|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999999999999875 999999999964
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=2.3e-14 Score=118.85 Aligned_cols=68 Identities=28% Similarity=0.444 Sum_probs=64.4
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999999999875 899999999964
No 29
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.51 E-value=4e-14 Score=115.34 Aligned_cols=66 Identities=15% Similarity=0.302 Sum_probs=63.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+||+ +|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence 9999999 99999999999999999999999999999999999999999999875 899999999985
No 30
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=4.3e-14 Score=116.96 Aligned_cols=68 Identities=26% Similarity=0.436 Sum_probs=65.0
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999999999875 899999999964
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.50 E-value=4.6e-14 Score=113.99 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=64.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+||+.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999998874 899999999964
No 32
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.50 E-value=1.9e-14 Score=130.81 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=62.1
Q ss_pred eEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccC-------CCCceeeec
Q 006885 28 RRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVR-------HDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGk-tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~-------~dStLhLvr 94 (627)
|+|||++..|+ ++.++|++++||..||++|++++|||+++|||||+|++|+|+.+ ||+ ++|||||+-
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 77888888887 59999999999999999999999999999999999999999986 899 799999964
No 33
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=3.6e-14 Score=124.78 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=66.5
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
....|+|+|||.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 45669999999999999999999999999999999999999999999999999999874 999999999974
No 34
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.50 E-value=3.6e-14 Score=122.08 Aligned_cols=69 Identities=13% Similarity=0.239 Sum_probs=62.5
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+...|+|+||+ |+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEEC
T ss_pred CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 55669999999 9999999999999999999999999999999999999999999875 899999999974
No 35
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.50 E-value=4.7e-14 Score=130.57 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=67.5
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
..+.|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+-
T Consensus 78 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 78 SDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 47789999999999999999999999999999999999999999999999999999875 999999999963
No 36
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=2.2e-14 Score=127.84 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=62.8
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCC---------------CCeEEEECCeEeccC-CC----ccCC
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT---------------EERSLIYGDTVLKND-LS----YVRH 86 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~---------------eqQrLIfgGk~LeDd-~t----gI~~ 86 (627)
.|+|+|||++|+++.|+|++++||.+||++|++++|||+ ++|+|||+|++|.|| .+ +|++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 399999999999999999999999999999999999987 467999999999754 54 9999
Q ss_pred CCceeeec
Q 006885 87 DSPLLLTR 94 (627)
Q Consensus 87 dStLhLvr 94 (627)
+++||||.
T Consensus 87 g~~l~lv~ 94 (105)
T 1v2y_A 87 RDEVSFIK 94 (105)
T ss_dssp SEEEEEEE
T ss_pred CCEEEEEe
Confidence 99999986
No 37
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.49 E-value=3.8e-14 Score=130.17 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=66.9
Q ss_pred cccccCCCeEEEEEeCCCcEE-EEEeccCCCHHHHHHHH-----HHHcCCCC--CCeEEEECCeEeccCCC----ccCCC
Q 006885 20 MESQHSGKRRVFVQTEMGYVL-GMELDRSDNAHTVKRKL-----QLALDVPT--EERSLIYGDTVLKNDLS----YVRHD 87 (627)
Q Consensus 20 ~~~~~s~~mqIfVKTltGktl-~~eVe~sdTV~~VK~kI-----qekeGIP~--eqQrLIfgGk~LeDd~t----gI~~d 87 (627)
.|....+.|+|+|||++|+++ .++|++++||..||++| ++++|||+ ++|||||+|++|+|+.+ +|+++
T Consensus 9 ~~~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 9 LEAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp -CCSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTT
T ss_pred hhhhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcC
Confidence 455566899999999999999 79999999999999999 67889997 89999999999999985 89988
Q ss_pred ------Cceeeec
Q 006885 88 ------SPLLLTR 94 (627)
Q Consensus 88 ------StLhLvr 94 (627)
+|+|||.
T Consensus 89 ~~~~~v~tmhlVl 101 (126)
T 1se9_A 89 NLAGAVTTMHVII 101 (126)
T ss_dssp SCTTCCEEEEEEE
T ss_pred CccCCcEEEEEEe
Confidence 7899974
No 38
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.49 E-value=3.3e-14 Score=125.01 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=61.6
Q ss_pred cCCCeEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHH-cCCCC-CCeEEEECCeEeccCCC------ccCCCCceeee
Q 006885 24 HSGKRRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLA-LDVPT-EERSLIYGDTVLKNDLS------YVRHDSPLLLT 93 (627)
Q Consensus 24 ~s~~mqIfVKTltGk--tl~~eVe~sdTV~~VK~kIqek-eGIP~-eqQrLIfgGk~LeDd~t------gI~~dStLhLv 93 (627)
....|+|+|||.+|+ +++|+|++++||..||++|+++ +|+|+ ++|||||+|++|+|+.+ +|++++|||||
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 446699999999999 7899999999999999999997 67765 99999999999999873 79999999996
No 39
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=6.3e-14 Score=119.87 Aligned_cols=70 Identities=20% Similarity=0.187 Sum_probs=64.3
Q ss_pred CCCeEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHHc--CCCCCCeEEEECCeEeccCCC------ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLAL--DVPTEERSLIYGDTVLKNDLS------YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGk--tl~~eVe~sdTV~~VK~kIqeke--GIP~eqQrLIfgGk~LeDd~t------gI~~dStLhLvr 94 (627)
...|+|+||+.+|+ ++.++|++++||.+||++|++++ |+|+++|||||+|++|+|+.+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 34699999999999 78888889999999999999998 999999999999999999874 789999999974
No 40
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.22 E-value=2.9e-15 Score=122.24 Aligned_cols=67 Identities=21% Similarity=0.336 Sum_probs=64.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+||||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 8999999999999999999999999999999999999999999999999998874 899999999963
No 41
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=1.3e-13 Score=118.12 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=65.8
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+..|+|+||+. |+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCB
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEE
Confidence 345699999999 9999999999999999999999999999999999999999999886 999999999974
No 42
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.47 E-value=8e-14 Score=132.65 Aligned_cols=67 Identities=27% Similarity=0.472 Sum_probs=64.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|||+|||.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999875 999999999963
No 43
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.46 E-value=4.4e-15 Score=144.60 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLv 93 (627)
|||||||++|++++|+|++++||.+||++|++++|||+++|||||+|++|+|+.+ +.++||||||
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~T-Ls~~STLhLv 65 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTEL-VTDDVTYYLS 65 (189)
T ss_dssp ------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCc-ccCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999999999887 5599999996
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.46 E-value=1.2e-13 Score=122.55 Aligned_cols=69 Identities=26% Similarity=0.430 Sum_probs=65.7
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
..|+|+||+.+|+++.|+|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 469999999999999999999999999999999999999999999999999999875 999999999964
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.46 E-value=1.4e-13 Score=118.64 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=64.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 71 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999875 899999999964
No 46
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.46 E-value=8e-14 Score=127.61 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=63.8
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHH------HcCCC--CCCeEEEECCeEeccCCC----ccCCCC--c
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQL------ALDVP--TEERSLIYGDTVLKNDLS----YVRHDS--P 89 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqe------keGIP--~eqQrLIfgGk~LeDd~t----gI~~dS--t 89 (627)
..+.|+|+|||++|++++|+|++++||.+||++|++ ++||| +++|||||+|++|+|+.+ +|+.++ |
T Consensus 14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t 93 (125)
T 2gow_A 14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 93 (125)
T ss_dssp CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 345699999999999999999999999999999999 88995 899999999999999985 788655 8
Q ss_pred eeeec
Q 006885 90 LLLTR 94 (627)
Q Consensus 90 LhLvr 94 (627)
||||.
T Consensus 94 lhlv~ 98 (125)
T 2gow_A 94 MHLVA 98 (125)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99974
No 47
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=129.40 Aligned_cols=70 Identities=26% Similarity=0.453 Sum_probs=65.8
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
...|+||||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+-
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 91 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 91 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeee
Confidence 4569999999999999999999999999999999999999999999999999999875 999999999963
No 48
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=1.7e-13 Score=121.33 Aligned_cols=74 Identities=9% Similarity=0.059 Sum_probs=67.0
Q ss_pred ccccCCCeEEEEEeCC----CcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceee
Q 006885 21 ESQHSGKRRVFVQTEM----GYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 21 ~~~~s~~mqIfVKTlt----Gktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhL 92 (627)
+-+..+.-.|.|++.+ |+++.++|++++||..||++|++++|||++||||||+|++|+|+.+ +|+++++||+
T Consensus 9 ~f~~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 9 NYRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMV 88 (100)
T ss_dssp SSSCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEE
T ss_pred hhhhcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEE
Confidence 3445666678888888 8899999999999999999999999999999999999999999986 9999999988
Q ss_pred ec
Q 006885 93 TR 94 (627)
Q Consensus 93 vr 94 (627)
++
T Consensus 89 l~ 90 (100)
T 1wju_A 89 LE 90 (100)
T ss_dssp EC
T ss_pred EE
Confidence 75
No 49
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.45 E-value=1.8e-13 Score=122.16 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=63.4
Q ss_pred CeEEEEEeCCC--cEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----cc-CCCCceeeec
Q 006885 27 KRRVFVQTEMG--YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YV-RHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltG--ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI-~~dStLhLvr 94 (627)
.|+|+|++..+ .+++|+|++++||..||++|++++|||+++|||+|+|+.|+|+.+ || ++|++|||+-
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEE
Confidence 49999999985 799999999999999999999999999999999999999998875 99 5999999963
No 50
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.44 E-value=9.1e-14 Score=126.40 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=63.0
Q ss_pred eEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCC-------CCceeeec
Q 006885 28 RRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRH-------DSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGk-tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~-------dStLhLvr 94 (627)
|.|||+.-.++ ++.++|++++||..||++|++++|||+++|||||+|++|+|+.+ ||++ ++||||+-
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 67899998899 89999999999999999999999999999999999999999985 8999 99999973
No 51
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=117.67 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=65.4
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
....|+|+||+. |+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~ 95 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVI 95 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEE
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 456799999999 9999999999999999999999999999999999999999998875 899999999974
No 52
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=2.6e-13 Score=118.61 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=65.4
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+..|+|+||+.+|+ +.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 92 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 92 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEE
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 456699999999997 7999999999999999999999999999999999999999875 999999999974
No 53
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.44 E-value=2.1e-13 Score=132.69 Aligned_cols=67 Identities=27% Similarity=0.470 Sum_probs=64.7
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|||||||.+|+++.|+|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 176 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999875 899999999963
No 54
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=4.2e-13 Score=117.19 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=64.2
Q ss_pred CCCeEEEEEeCCC----cEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-CC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMG----YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-LS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltG----ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd-~t----gI~~dStLhLvr 94 (627)
+..|+|+||+.+| +++.++|++++||.+||++|++++|||+++|||+|+|++|+|+ .+ +|+++++|||+.
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 3459999999865 7999999999999999999999999999999999999999987 44 899999999974
No 55
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=5.6e-13 Score=116.84 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=65.0
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+..|+|+||+.+|+ +.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 87 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEE
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 345699999999997 7999999999999999999999999999999999999999875 899999999974
No 56
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=127.88 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=68.3
Q ss_pred ccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 23 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 23 ~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+..+.|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 92 ~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 92 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp CCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred cccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 467889999999999999999999999999999999999999999999999999999875 999999999963
No 57
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.3e-13 Score=120.58 Aligned_cols=70 Identities=26% Similarity=0.460 Sum_probs=65.7
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
-+..+|+||+++|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 80 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVL 80 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEE
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3567999999999999999999999999999999999999999999999999998874 899999999964
No 58
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=9.9e-13 Score=119.64 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=65.2
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
...|+|+||+. |+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~ 102 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI 102 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45699999999 9999999999999999999999999999999999999999998875 899999999974
No 59
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.3e-13 Score=118.39 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEE--CCeEeccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY--GDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIf--gGk~LeDd~t----gI~~dStLhLvr 94 (627)
..|++|+++.+|+++.|+|++++||+.||++|++++|||+++|+|+| +|+ |+|+.+ +|+++++||||-
T Consensus 7 ~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 7 GRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECC
T ss_pred cceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEe
Confidence 36999999999999999999999999999999999999999999997 666 988875 899999999985
No 60
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.42 E-value=3e-13 Score=125.20 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=64.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE-E-CCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI-Y-GDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI-f-gGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||.+|+++.++|++++||.+||++|++++|||+++|||+ | +|++|+|+.+ +|+++++|||+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence 89999999999999999999999999999999999999999999 9 7999999875 999999999975
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.41 E-value=8.3e-13 Score=116.95 Aligned_cols=74 Identities=26% Similarity=0.415 Sum_probs=67.8
Q ss_pred ccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 21 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 21 ~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+.....|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 29 ~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 29 EGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp CGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred cCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 34445579999999999999999999999999999999999999999999999999998874 899999999964
No 62
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.41 E-value=3.8e-13 Score=118.98 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=66.6
Q ss_pred cCCCeEEEEEeC---CCcEEEEEecc-CCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTE---MGYVLGMELDR-SDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTl---tGktl~~eVe~-sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
..+.|+|+||+. +|+++.++|++ ++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 456799999999 99999999998 999999999999999999999999999999999875 899999999963
No 63
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=5.3e-13 Score=114.32 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=62.2
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-CC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-LS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd-~t----gI~~dStLhLvr 94 (627)
...|+|+||+.+|+++.++|++++||.+||++|++++ +++|||+|+|+.|+|+ .+ +|+++++|||+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~ 76 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHR 76 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEE
Confidence 3469999999999999999999999999999999998 6999999999999998 54 899999999975
No 64
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.39 E-value=2.7e-14 Score=129.60 Aligned_cols=67 Identities=27% Similarity=0.472 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||.+|+++.++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999999999999875 999999999963
No 65
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.4e-13 Score=120.67 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=63.2
Q ss_pred ccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 23 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 23 ~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+....|+|+||+ +|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 24 ~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 24 QGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 98 (101)
T ss_dssp -----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECC
T ss_pred cCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 344557899998 99999999999999999999999999999999999999999999874 999999999985
No 66
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=1.4e-12 Score=115.00 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=64.0
Q ss_pred CCCeEEEEEeCCC---cEEEEE--------eccC-CCHHHHHHHHHHHc--CCCCCC-eEEEECCeEeccCCC----ccC
Q 006885 25 SGKRRVFVQTEMG---YVLGME--------LDRS-DNAHTVKRKLQLAL--DVPTEE-RSLIYGDTVLKNDLS----YVR 85 (627)
Q Consensus 25 s~~mqIfVKTltG---ktl~~e--------Ve~s-dTV~~VK~kIqeke--GIP~eq-QrLIfgGk~LeDd~t----gI~ 85 (627)
...|+|+||+.+| +++.|+ |+++ +||.+||++|++++ |||+++ |||+|+|+.|+|+.+ +|+
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 4469999999999 899999 5555 99999999999999 999999 999999999999875 999
Q ss_pred CCCceeeec
Q 006885 86 HDSPLLLTR 94 (627)
Q Consensus 86 ~dStLhLvr 94 (627)
++++|||+.
T Consensus 90 ~g~~i~lv~ 98 (107)
T 1x1m_A 90 PGSTVHVLR 98 (107)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999975
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.36 E-value=9.7e-13 Score=112.49 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=64.2
Q ss_pred CCeEEEEEeCCCcEEEE-EeccCCCHHHHHHHHHHHcCCCCCCeEEE---ECCeEeccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVLGM-ELDRSDNAHTVKRKLQLALDVPTEERSLI---YGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~-eVe~sdTV~~VK~kIqekeGIP~eqQrLI---fgGk~LeDd~t----gI~~dStLhLvr 94 (627)
..|+|+||+ .|+++.+ +|++++||.+||++|++++|||+++|||+ |+|++|+|+.+ +|+++++|||+.
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 469999997 8999999 99999999999999999999999999999 99999998875 899999999985
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.36 E-value=1.9e-12 Score=117.39 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=67.8
Q ss_pred ccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 23 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 23 ~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+..+.|+|+||+.+|+++.++|++++||.+||++|+++.|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 72 ~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 72 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 456779999999999999999999999999999999999999999999999999998875 899999999974
No 69
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.35 E-value=7e-14 Score=131.68 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=0.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
|||+|||.+|+++.|+|++++||.+||++|++.+|||+++|||+|+|++|+|+.+ +|+++++|||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999999999875 89999999996
No 70
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=1.4e-12 Score=113.31 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=62.8
Q ss_pred CCeEEEEEeCCCcEE-EEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVL-GMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl-~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
..|+|+||+ .|+++ .++|++++||.+||++|++++|||+++|||+|.|+.|+|+ + +|+++++|||+.
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 459999996 79999 6999999999999999999999999999999999999987 5 899999999985
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.35 E-value=1.8e-12 Score=117.58 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=64.4
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
|+|+|||.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 71 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEe
Confidence 8999999999999999999999999999999999999999999999999998875 899999999975
No 72
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=4.2e-12 Score=108.15 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=62.5
Q ss_pred CCeEEEEEeCCCcEEEEEeccC-----CCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC-C----ccCCCCceeeec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRS-----DNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL-S----YVRHDSPLLLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~s-----dTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~-t----gI~~dStLhLvr 94 (627)
..|+|+||+ .|+++.++|+++ .||.+||++|+++.|||+++|||+|+|+.|.|+. + +|+++++|||+.
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 459999999 699999999995 9999999999999999999999999999999843 3 899999999985
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.32 E-value=3.3e-12 Score=108.22 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=63.2
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.-.++|++.+|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++|||+.
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 34678899999999999999999999999999999999999999999999998874 899999999974
No 74
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=9.5e-13 Score=113.01 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=60.5
Q ss_pred CeEEEEEeCCCcEE--EE-EeccCCCHHHHHHHHHHH-cCCCCCCeEEEEC--CeEeccCCC----ccCCCCceee
Q 006885 27 KRRVFVQTEMGYVL--GM-ELDRSDNAHTVKRKLQLA-LDVPTEERSLIYG--DTVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 27 ~mqIfVKTltGktl--~~-eVe~sdTV~~VK~kIqek-eGIP~eqQrLIfg--Gk~LeDd~t----gI~~dStLhL 92 (627)
.|+|+|||.+|+++ .+ +|++++||.+||++|+++ .|||+++|||+|. |++|+|+.+ +|+++++||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 39999999999886 58 999999999999999995 8999999999987 999998875 8999999987
No 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.31 E-value=2.7e-12 Score=111.04 Aligned_cols=75 Identities=8% Similarity=0.088 Sum_probs=65.8
Q ss_pred cccccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 18 KRMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 18 ~~~~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
.+-+......|+|+||. .|+++.++|++++||.+||++|+++.|||+++|||+|.|++|+| .+ +|+++++|||+
T Consensus 8 ~~~~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv 85 (95)
T 1v86_A 8 DAGGGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVV 85 (95)
T ss_dssp CCCCCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEEC
T ss_pred CCCCCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEE
Confidence 33344456779999995 79999999999999999999999999999999999999999944 44 89999999998
Q ss_pred c
Q 006885 94 R 94 (627)
Q Consensus 94 r 94 (627)
.
T Consensus 86 ~ 86 (95)
T 1v86_A 86 G 86 (95)
T ss_dssp C
T ss_pred e
Confidence 5
No 76
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.29 E-value=1e-11 Score=110.51 Aligned_cols=71 Identities=23% Similarity=0.285 Sum_probs=65.8
Q ss_pred cCCCeEEEEEeC----------CCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCc
Q 006885 24 HSGKRRVFVQTE----------MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSP 89 (627)
Q Consensus 24 ~s~~mqIfVKTl----------tGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dSt 89 (627)
..+.++|.|+.. +|+++.++|++++||.+||++|++++|||+++|||+|+|+.|+|+.+ +|+++++
T Consensus 22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~ 101 (115)
T 1we7_A 22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV 101 (115)
T ss_dssp CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence 456899999986 58999999999999999999999999999999999999999999875 9999999
Q ss_pred eeeec
Q 006885 90 LLLTR 94 (627)
Q Consensus 90 LhLvr 94 (627)
|||+.
T Consensus 102 i~lv~ 106 (115)
T 1we7_A 102 IHLAL 106 (115)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99963
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.29 E-value=8.2e-12 Score=108.91 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=63.5
Q ss_pred cCCCeEEEEEeCCCc--EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC--Ce---Ee-ccCCC----ccCCCCcee
Q 006885 24 HSGKRRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DT---VL-KNDLS----YVRHDSPLL 91 (627)
Q Consensus 24 ~s~~mqIfVKTltGk--tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg--Gk---~L-eDd~t----gI~~dStLh 91 (627)
+.+.+.|+|++..+. ++.++|++++||.+||++|+.++|||+++|||+|. |+ +| +|+.+ +|+++++||
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 577899999998775 89999999999999999999999999999999997 45 55 77765 999999999
Q ss_pred eec
Q 006885 92 LTR 94 (627)
Q Consensus 92 Lvr 94 (627)
|+.
T Consensus 92 lvD 94 (95)
T 2kjr_A 92 VVD 94 (95)
T ss_dssp EEE
T ss_pred EEC
Confidence 984
No 78
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.24 E-value=1.5e-11 Score=127.66 Aligned_cols=71 Identities=27% Similarity=0.468 Sum_probs=67.3
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.++.|+|+||+.+|+++.++|++++||.+||++|++++|||+++|||+|+|++|+|+.+ +|+++++|||+.
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 56789999999999999999999999999999999999999999999999999998875 899999999974
No 79
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.5e-11 Score=107.63 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=63.5
Q ss_pred eEEEEE-eCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQ-TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVK-TltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+.|.|| +..|..+.+.++++.||.+||++|++++++|+++|||||+|+.|+|+.+ ||+++.|||||.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi 87 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEI 87 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEE
Confidence 778888 6678899999999999999999999999999999999999999999987 999999999986
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.20 E-value=1.6e-11 Score=108.44 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=60.4
Q ss_pred eEEEEEeCCCcEEEEEec-cCCCHHHHHHHHHHHcCCCCCCeEEEECCe-----------E----eccCCC----ccCCC
Q 006885 28 RRVFVQTEMGYVLGMELD-RSDNAHTVKRKLQLALDVPTEERSLIYGDT-----------V----LKNDLS----YVRHD 87 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe-~sdTV~~VK~kIqekeGIP~eqQrLIfgGk-----------~----LeDd~t----gI~~d 87 (627)
|+|+|||.+|+. .|+|+ +++||.+||++|++++|||+++|+|+|.++ + ++|+.+ +|+++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 999999999977 89999 999999999999999999999999999988 4 466654 99999
Q ss_pred Cceeeec
Q 006885 88 SPLLLTR 94 (627)
Q Consensus 88 StLhLvr 94 (627)
++|||+.
T Consensus 87 ~~L~l~~ 93 (107)
T 1wf9_A 87 SMVYLAY 93 (107)
T ss_dssp CEEECCC
T ss_pred CEEEEEe
Confidence 9999985
No 81
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.18 E-value=1.7e-11 Score=129.91 Aligned_cols=69 Identities=13% Similarity=0.312 Sum_probs=64.0
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHH---HcCCCCCCeEEEECCeEeccCCC----ccCCCCce-eeec
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQL---ALDVPTEERSLIYGDTVLKNDLS----YVRHDSPL-LLTR 94 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqe---keGIP~eqQrLIfgGk~LeDd~t----gI~~dStL-hLvr 94 (627)
..|+|+|||.+|+++.|+|++++||.+||++|++ ++|||+++|||||+|+.|+|+.+ +|+++++| ||+.
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 4599999999999999999999999999999999 67899999999999999999874 89999999 7764
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.16 E-value=6.5e-11 Score=103.77 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=61.9
Q ss_pred cCCCeEEEEEeCCC--cEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC---eE---e-ccCCC----ccCCCCce
Q 006885 24 HSGKRRVFVQTEMG--YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD---TV---L-KNDLS----YVRHDSPL 90 (627)
Q Consensus 24 ~s~~mqIfVKTltG--ktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG---k~---L-eDd~t----gI~~dStL 90 (627)
.++-..|+|++.+. +++.++|++++||++||++|+.++|||+++|||+|.| +. | +|+.+ +|+++++|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 35668899998665 4899999999999999999999999999999999988 33 4 77765 99999999
Q ss_pred eeec
Q 006885 91 LLTR 94 (627)
Q Consensus 91 hLvr 94 (627)
||+.
T Consensus 91 hlvd 94 (97)
T 2kj6_A 91 HIID 94 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=8.9e-11 Score=102.19 Aligned_cols=70 Identities=6% Similarity=0.100 Sum_probs=66.1
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+..|+|+||+.+|+++.|.|.+++++..||+.++++.|||+++|||+|+|++|.++.| +++++++||++.
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999999999999886 999999999975
No 84
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.12 E-value=4e-11 Score=102.70 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=56.8
Q ss_pred EEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEE-------CCeEeccCCC----ccCCCCceeeec
Q 006885 31 FVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY-------GDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 31 fVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIf-------gGk~LeDd~t----gI~~dStLhLvr 94 (627)
.-....++.+.+.+++++||++||++|+.++|||+++|||+| .|++|+|+.+ +|+++++||||.
T Consensus 8 ths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 8 THSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 334456778899999999999999999999999999999996 4888999986 999999999985
No 85
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.04 E-value=2.5e-10 Score=96.59 Aligned_cols=66 Identities=14% Similarity=0.294 Sum_probs=58.6
Q ss_pred eEEEEEeCCCcEEEEE-eccCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEec---cCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGME-LDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLK---NDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~e-Ve~sdTV~~VK~kIqekeGIP~eqQrLIfg--Gk~Le---Dd~t----gI~~dStLhLvr 94 (627)
|+|+||+.+|+.+ ++ |++++||.+||++|+++.|||+++|||+|+ +++|+ ++.+ ||.++++|||..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 7899999999765 77 999999999999999999999999999998 48874 3443 899999999975
No 86
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.03 E-value=6.9e-10 Score=91.47 Aligned_cols=66 Identities=6% Similarity=0.091 Sum_probs=63.5
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
|+|+||+.+|+++.|.|.+++++..|+..++++.|+|+.+|||+|+|++|.++.| +++++++||+.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999886 89999999985
No 87
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.02 E-value=4e-10 Score=97.12 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=58.5
Q ss_pred eEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC---eE----eccCCC----ccCCCCceeeec
Q 006885 28 RRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD---TV----LKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGk-tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG---k~----LeDd~t----gI~~dStLhLvr 94 (627)
+.|+|+..... .+.++|++++||.+||++|+.++|||+++|||+|.| +. ++|+.+ +|+++++|||+.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 78899886553 799999999999999999999999999999999986 43 467764 899999999985
No 88
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.00 E-value=1.8e-09 Score=90.82 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=65.7
Q ss_pred cCCCeEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 24 HSGKRRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 24 ~s~~mqIfVKTltGk-tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
.+..|+|+||+.+|+ ++.|.|.+++++..|+..++++.|+++++|||+|+|++|.++.| +++++++||+.
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 356799999999997 99999999999999999999999999999999999999999887 99999999974
No 89
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.99 E-value=6.8e-10 Score=100.24 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCCeEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC---e---Ee-ccCCC----ccCCCCceee
Q 006885 25 SGKRRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD---T---VL-KNDLS----YVRHDSPLLL 92 (627)
Q Consensus 25 s~~mqIfVKTltGk-tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG---k---~L-eDd~t----gI~~dStLhL 92 (627)
++.+.|+|++..+. .+.++|++++||..||++|+.++|||+++|||+|.| + +| +|+.+ +|+++++|||
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 45688999986653 789999999999999999999999999999999977 4 34 66654 9999999999
Q ss_pred ec
Q 006885 93 TR 94 (627)
Q Consensus 93 vr 94 (627)
+.
T Consensus 84 vd 85 (122)
T 1t0y_A 84 VD 85 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=1.2e-09 Score=94.77 Aligned_cols=70 Identities=6% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
...|+|+||+.+|+++.|.|.+++++..|+..++++.|||+.+|||+|+|++|.++.| +++++++|+++.
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 3569999999999999999999999999999999999999999999999999998886 899999999975
No 91
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.93 E-value=2.3e-09 Score=96.19 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=71.4
Q ss_pred CCcccccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCcee
Q 006885 16 GSKRMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLL 91 (627)
Q Consensus 16 ~~~~~~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLh 91 (627)
+.++.+-..+..|+|+||+.+|+++.|.|.+++++..|+..++++.|||+++|||+|+|++|.++.| +++++++||
T Consensus 15 ~~~~~~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Id 94 (110)
T 2k8h_A 15 GAEGTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVID 94 (110)
T ss_dssp CCCCCCCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEE
T ss_pred cccCCCCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence 3344444566789999999999999999999999999999999999999999999999999999986 899999999
Q ss_pred eec
Q 006885 92 LTR 94 (627)
Q Consensus 92 Lvr 94 (627)
++.
T Consensus 95 v~~ 97 (110)
T 2k8h_A 95 AMV 97 (110)
T ss_dssp EEC
T ss_pred EEE
Confidence 975
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.91 E-value=3.4e-09 Score=91.84 Aligned_cols=71 Identities=6% Similarity=0.105 Sum_probs=66.7
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+..|+|+||+.+|+++.|.|.+++++..|+..++++.||++++|||+|+|++|.++.| +++++++||++.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 46679999999999999999999999999999999999999999999999999998886 899999999974
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.90 E-value=1.1e-09 Score=114.05 Aligned_cols=67 Identities=15% Similarity=0.274 Sum_probs=61.2
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE---ECCeEeccCCC----ccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI---YGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI---fgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.|.|.||. +|+++.++|++++||..||++|++++|||+++|+|+ |+|++|+|+.+ +|+++++|||+-
T Consensus 5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~g 78 (320)
T 3shq_A 5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78 (320)
T ss_dssp EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEEC
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEc
Confidence 48899996 899999999999999999999999999999999999 89999999874 899999999985
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=3.4e-09 Score=94.05 Aligned_cols=71 Identities=6% Similarity=0.105 Sum_probs=67.4
Q ss_pred cCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 24 HSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 24 ~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+..|+|+||+.+|+++.|.|.+++++..|+..++++.||++.+|||+|+|++|.++.| +++++++||++.
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 56789999999999999999999999999999999999999999999999999998886 899999999974
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.86 E-value=7.7e-09 Score=92.30 Aligned_cols=71 Identities=6% Similarity=0.081 Sum_probs=66.7
Q ss_pred ccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 23 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 23 ~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
..+..|+|+||+ +|+++.|.|.+++++..|+..++++.||++.+|||+|+|++|.++.| +++++++||++.
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 356779999999 99999999999999999999999999999999999999999998886 899999999974
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.47 E-value=3.2e-07 Score=79.14 Aligned_cols=73 Identities=26% Similarity=0.262 Sum_probs=61.5
Q ss_pred cccCCCeEEEEEe---CCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC------e-EeccCC-C----ccCC
Q 006885 22 SQHSGKRRVFVQT---EMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD------T-VLKNDL-S----YVRH 86 (627)
Q Consensus 22 ~~~s~~mqIfVKT---ltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG------k-~LeDd~-t----gI~~ 86 (627)
+..++.+.|+|+. .+|..+.+.+.++.||++||.+|+...|+|+..|+|.|.+ . .|.||. + +|++
T Consensus 4 ~~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~ 83 (97)
T 1wjn_A 4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN 83 (97)
T ss_dssp CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred cccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence 3456778899986 5889999999999999999999999999999999999873 2 255544 2 9999
Q ss_pred CCceeeec
Q 006885 87 DSPLLLTR 94 (627)
Q Consensus 87 dStLhLvr 94 (627)
+++||++.
T Consensus 84 G~~I~V~d 91 (97)
T 1wjn_A 84 GDCLLVRW 91 (97)
T ss_dssp TCEEEEEC
T ss_pred CCEEEEEe
Confidence 99999974
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.28 E-value=2.8e-06 Score=76.95 Aligned_cols=70 Identities=6% Similarity=0.108 Sum_probs=65.7
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
...++|.|++.+|+.+.|.|.+++++..|+....++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 4679999999999999999999999999999999999999999999999999998886 899999999974
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.1e-06 Score=82.34 Aligned_cols=73 Identities=7% Similarity=0.103 Sum_probs=66.7
Q ss_pred ccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 21 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 21 ~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+..+...++|+|+ .+|+++.|.|.+++++..|+...+++.|+|+.++|++|+|++|.++.| +++++++|+++.
T Consensus 23 ~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 23 EVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp --CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 3446778999998 599999999999999999999999999999999999999999999886 999999999975
No 99
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.14 E-value=4.4e-06 Score=73.35 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEec
Q 006885 35 EMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLK 78 (627)
Q Consensus 35 ltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~Le 78 (627)
.++..+.+.|++.+||..+|++|++++|||+++|+|+|+|++|.
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 37888999999999999999999999999999999999999875
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.99 E-value=1e-05 Score=79.47 Aligned_cols=78 Identities=6% Similarity=0.092 Sum_probs=65.3
Q ss_pred CCcccccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCcee
Q 006885 16 GSKRMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLL 91 (627)
Q Consensus 16 ~~~~~~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLh 91 (627)
...+-+.++...++|.|+ .+|+++.|.|.+++++..|+....++.|+++.++|++|+|++|.++.| +++++++|+
T Consensus 46 ~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtID 124 (207)
T 3tix_A 46 PEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIE 124 (207)
T ss_dssp ---------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEE
T ss_pred CCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEE
Confidence 333444456778999998 599999999999999999999999999999999999999999999886 999999999
Q ss_pred eec
Q 006885 92 LTR 94 (627)
Q Consensus 92 Lvr 94 (627)
++.
T Consensus 125 V~l 127 (207)
T 3tix_A 125 AHR 127 (207)
T ss_dssp ECC
T ss_pred EEE
Confidence 975
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.65 E-value=6.7e-06 Score=81.65 Aligned_cols=75 Identities=7% Similarity=0.107 Sum_probs=0.0
Q ss_pred ccccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 19 RMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 19 ~~~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+.+-.+..-|+|+| +.+|+++.|.|.+++.+..|+....++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 13 ~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 13 KPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 44556788899999 8999999999999999999999999999999999999999999998886 899999999974
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.55 E-value=0.00024 Score=69.64 Aligned_cols=75 Identities=7% Similarity=0.090 Sum_probs=65.6
Q ss_pred ccccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 19 RMESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 19 ~~~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
+-+-.+++.+.|.|++ +|+.+.|.|.+++....|+....++.|+|+.++|++|.|+.+.++.+ .++++++|++..
T Consensus 13 ~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 13 KPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp -----CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred cceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 4455678889999998 89999999999999999999999999999999999999999988875 788999999875
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.42 E-value=8.7e-05 Score=62.61 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeE---e--ccCCC----ccCCCCceeee
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTV---L--KNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~---L--eDd~t----gI~~dStLhLv 93 (627)
..|.|-||+..| +..++|++++||.+||++|+++.+|+++.|.|.++-.. | ..+.+ ||++|++|+|.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 348899999998 77899999999999999999999999999988777554 3 23322 88889988874
No 104
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=96.84 E-value=0.00024 Score=73.78 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=39.2
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEee-cCccccCCcC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPI-DHGLCLPENL 336 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DHGlclP~~~ 336 (627)
.++-++.|||++|+|+|||..||=+-.. +..|.+.|.|+ |||.++...+
T Consensus 139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~---~~tg~~~LAP~YD~~~s~~~~~ 188 (325)
T 3akj_A 139 CFFWDMFVADTLLGNFDRHNGNWGFLRA---SNSKEYQIAPIFDCGSCLYPQA 188 (325)
T ss_dssp HHHHHHHHHHHHHTCSCCCGGGCEEEEE---SSSSCEEECCBCCCTTSSCTTC
T ss_pred HHHHHHHHhhHhhcCCCCCCcCeEEEEE---CCCCCEEecCcccccccccccC
Confidence 4577999999999999999999966663 22256899998 9999887433
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.81 E-value=0.00019 Score=76.13 Aligned_cols=73 Identities=7% Similarity=0.091 Sum_probs=0.0
Q ss_pred ccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 21 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 21 ~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
.-+++..+.|.|++ +|+++.|.|.++++...|+....++.|+++.++|++|+|++|.++.| +++++++|+++.
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 44477889999998 79999999999999999999999999999999999999999998886 899999998864
No 106
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=96.71 E-value=0.00095 Score=70.38 Aligned_cols=140 Identities=18% Similarity=0.126 Sum_probs=81.1
Q ss_pred cccccccceEEEEEeCCCCeEEEEeCCCCCCCCCCCCCcccccccCCCCCCCccccCCcchhhhhhhhhcCCCCCCCccc
Q 006885 152 IPVHSGLGGAYYFRNCAGENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFREVAAYLLDYDHFANVPCT 231 (627)
Q Consensus 152 ~~i~~GSgGsYf~~~~~Gk~vaVFKP~DEEP~a~nNPk~f~~~~~g~~g~krg~lvGe~a~REVAAYLLD~~gf~~VP~T 231 (627)
.++..|++|.|||... ....|.|+.. + -..|+-+|.|-...---+|..
T Consensus 75 ~~s~~Gstgvff~~td--~~~~VVK~s~-------------------------~-----l~~E~l~s~LA~~LGlpiP~~ 122 (342)
T 1cja_A 75 ERSEKGTEGLFFVETE--SGVFIVKRST-------------------------N-----IESETFCSLLCMRLGLHAPKV 122 (342)
T ss_dssp EECCSTTSCEEEEEES--SCEEEEECCT-------------------------T-----HHHHHHHHHHHHHHTCCCCCE
T ss_pred EeccCCCCCeEEEEeC--CCEEEEeCcH-------------------------H-----HHHHHHHHHHHHHhCCCCCCe
Confidence 3567899999999983 3477888541 1 156777777765322458888
Q ss_pred eEEEeeccccccC-------CCCCcccccccCCCCC-cceeeecccCCCCCCCCCC----CCCCh---hhhhhccccceE
Q 006885 232 ALVKVTHEIFNIN-------NGVNGNKIRKRKQVSK-IASLQQFIPHDFDASDHGT----SSFPV---AAVHRIGILDIR 296 (627)
Q Consensus 232 ~lV~~~hp~Fn~~-------~~~~~~~~~~~~~p~K-iGSlQ~FV~~d~~a~d~g~----~~F~v---~evhKIaILDir 296 (627)
.+|....+-|.-- +.. +. .-+.+-.+ ..=++.|+++..-. +... ..|.. .++-||.+||+.
T Consensus 123 Riv~~~~~E~~e~~~~L~~~~~~-~~--~l~~l~~~~~~l~meyv~G~~L~-e~~~~~~~~~f~~~~~k~LG~Ii~FDi~ 198 (342)
T 1cja_A 123 RVVSSNSEEGTNMLECLAAIDKS-FR--VITTLANQANILLMELVRGITLN-KLTTTSAPEVLTKSTMQQLGSLMALDVI 198 (342)
T ss_dssp EEEESSSHHHHHHHHHHHHHCSS-SC--HHHHHTTCSEEEEEECCCEEEST-TCCSSSHHHHSCHHHHHHHHHHHHHHHH
T ss_pred eEEeeCcHHHHHHHHHHHHhhhh-hH--HHHHhhcccceehhhhcCCCccc-cchhhhhhhhcCHHHHHhhchhheehhh
Confidence 8888764422100 000 00 00000011 11347777643211 1111 22333 344579999999
Q ss_pred eecCCCC------CC---ceEEeeecCCCCCcceEEEeecCccccCC
Q 006885 297 ILNTDRH------AG---NLLVKKFEGTGSFGQVELVPIDHGLCLPE 334 (627)
Q Consensus 297 i~NtDRh------~G---NiLV~~~~~~g~~g~~~L~pIDHGlclP~ 334 (627)
|+|.||- .| |||+... .+ .+++|||++||-.
T Consensus 199 InN~DR~Pl~W~n~GN~~NIL~~~~--n~-----~~~~IDhn~af~~ 238 (342)
T 1cja_A 199 VNNSDRLPIAWTNEGNLDNIMLSER--GA-----TVVPIDSKIIPLD 238 (342)
T ss_dssp HTCCSSSCSSSCSCCCGGGEEEESB--TT-----CEEECSCCCCCCC
T ss_pred hcCCccCcccccCCCChhheEEeCC--CC-----eEEEEcCCccccC
Confidence 9999997 34 6677652 11 6999999999984
No 107
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.57 E-value=0.012 Score=51.67 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=63.0
Q ss_pred ccCCCeEEEEEeCCCc-EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceee
Q 006885 23 QHSGKRRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLL 92 (627)
Q Consensus 23 ~~s~~mqIfVKTltGk-tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhL 92 (627)
.....+.|.|+..+|+ .+.|.|.++.+...|.....++.|+++..-|++|+|..|..+.| +++++.+|.+
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 3556789999999995 89999999999999999999999999999999999999998887 8888888865
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.39 E-value=0.00053 Score=72.24 Aligned_cols=74 Identities=7% Similarity=0.077 Sum_probs=0.0
Q ss_pred cccccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 20 MESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 20 ~~~~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
-+.+..+.+.|.|++ +|+++.|.|.++++...|++...++.|+++.++|++|+|++|.++.| +++++.+|+++.
T Consensus 23 ~~~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 23 PEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCCCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 344466778999998 89999999999999999999999999999999999999999998886 899999999964
No 109
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.04 E-value=0.021 Score=49.81 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
++.|.|.|-..+|+..++.|.++.++.+|=++--+++|+.+++-.|.|+++.|+-... |+.+++.|-|+.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEE
Confidence 4568999999999999999999999999988888899999998899999999976663 999999999985
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.88 E-value=0.016 Score=53.47 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=36.0
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCC
Q 006885 29 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTE 66 (627)
Q Consensus 29 qIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~e 66 (627)
-+.|+.++|...++.|+.+.+|..++..|..+.||+..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 69999999999999999999999999999999999844
No 111
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=94.90 E-value=0.13 Score=45.22 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=62.8
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~t----gI~~dStLhLvr 94 (627)
...+.|.|+. .|..+.|.|-++.....|..-..++.|+++..-|++|+|..+..+.| +++++.+|..+.
T Consensus 19 ~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 19 PRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 4448899995 89999999999999999999999999999999999999999999887 999999998864
No 112
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.67 E-value=0.32 Score=41.65 Aligned_cols=67 Identities=4% Similarity=0.069 Sum_probs=58.8
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCC-CeEEEECCeEeccCCC----ccCCCCceeee
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTE-ERSLIYGDTVLKNDLS----YVRHDSPLLLT 93 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~e-qQrLIfgGk~LeDd~t----gI~~dStLhLv 93 (627)
++.+.+++.....+.|.|.++.+|..|=..-.++.|||+. .-||+|.|..|..+.+ .+.++..|..+
T Consensus 9 ~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 9 LITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 5678888888889999999999999998888999999998 7899999999987775 78888877664
No 113
>3tpd_A Serine/threonine-protein kinase HIPA; persistence, multidrug tolerance, HIPB, transferase; 1.50A {Escherichia coli} PDB: 3tpe_A* 3tpv_B* 3tpt_A* 3hzi_A* 2wiu_A 3tpb_A 3dnu_A 3dnt_A 3dnv_A* 3fbr_A*
Probab=85.29 E-value=0.9 Score=48.52 Aligned_cols=45 Identities=27% Similarity=0.250 Sum_probs=36.0
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEee-cCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPI-DHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DHGlclP 333 (627)
.++-|..||.+++.|+|-|..|+=+-.. ..|.++|.|+ |--.+.|
T Consensus 293 ~~~~rr~vfn~ligN~D~H~KN~s~l~~----~~g~~~LaPaYDl~~~~~ 338 (440)
T 3tpd_A 293 YDFMKFQVFQWLIGATDGHAKNFSVFIQ----AGGSYRLTPFYDIISAFP 338 (440)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGCEEEEC----GGGCEEECCCCCCCCSGG
T ss_pred HHHHHHHHhhHhhcCCcCCccceEEEEc----CCCceEECchhhcccccc
Confidence 4566778999999999999999998763 2357899999 7665555
No 114
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=81.96 E-value=3.8 Score=34.02 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=51.3
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEE--CCeEec--c-CCC----ccCCCCceee
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY--GDTVLK--N-DLS----YVRHDSPLLL 92 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIf--gGk~Le--D-d~t----gI~~dStLhL 92 (627)
+.-+|-||..+|+.+.-....++||.+|..-|.. .+.+.....|+- -.+.|. | +.+ |+.+.++|++
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 4468999999999998899999999999999987 677777788874 367784 2 222 6666667666
No 115
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=73.81 E-value=8.6 Score=32.89 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD 74 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgG 74 (627)
.|.|.|.-. -++.|.|-++-+...+..+|.+++++|++.-.|-|.+
T Consensus 5 ~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 5 AYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp CEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred cEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 466666654 7999999999999999999999999998888999985
No 116
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=72.56 E-value=2.8 Score=38.32 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=30.3
Q ss_pred EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE
Q 006885 39 VLGMELDRSDNAHTVKRKLQLALDVPTEERSLI 71 (627)
Q Consensus 39 tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI 71 (627)
..+|.|-.+.|+.++|.+|++.+|+|+++|||-
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 456889999999999999999999999999995
No 117
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=69.59 E-value=31 Score=30.93 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=53.4
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE--ECCeEec--c-CCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI--YGDTVLK--N-DLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI--fgGk~Le--D-d~t----gI~~dStLhLvr 94 (627)
.+..+|-||..+|+.+.-....++||.+|..-|... +.+...-.|+ |--+.|. | +.+ ++.+.++|++.+
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 455899999999999999999999999999999876 7766677776 3477884 3 223 666667777754
No 118
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=68.10 E-value=42 Score=29.30 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=54.9
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE--ECCeEecc---CCC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLI--YGDTVLKN---DLS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI--fgGk~LeD---d~t----gI~~dStLhLvr 94 (627)
.+--+|-||..+|+.+.-....++||.+|..-|....+.+...-.|+ |--+.|.+ +.+ ++.+.++|++..
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 44578999999999999999999999999999999877776667776 34666762 223 777778888853
No 119
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=66.26 E-value=17 Score=29.95 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=44.2
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLvr 94 (627)
|+|.||-.+.+...+++....||.+| -+++|||++.=-..-+|+.+..+.. + ++..|-+++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dL----L~~Lgl~~~~VvV~vNG~~v~~d~~-l-~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADL----VRAVDLSPHEVTVLVDGRPVPEDQS-V-EVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHH----HHTTCCCSSCCCEECCCCCCCTTSS-S-CCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHH----HHHcCCCcceEEEEECCEECCHHHC-C-CCCEEEEEE
Confidence 78999987555666899999999876 4568999877666677887755542 3 467766654
No 120
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=65.87 E-value=17 Score=32.67 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=38.1
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHH--cCCCC------CCeEEEEC----CeEeccCC-C----------------ccCC
Q 006885 36 MGYVLGMELDRSDNAHTVKRKLQLA--LDVPT------EERSLIYG----DTVLKNDL-S----------------YVRH 86 (627)
Q Consensus 36 tGktl~~eVe~sdTV~~VK~kIqek--eGIP~------eqQrLIfg----Gk~LeDd~-t----------------gI~~ 86 (627)
.+..+.+.|-.+|||..||+||-+. .|+|. ++..|-+. |+.|.|.. + +|.+
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3556888999999999999999987 46654 34456553 56665532 2 5666
Q ss_pred CCceeeec
Q 006885 87 DSPLLLTR 94 (627)
Q Consensus 87 dStLhLvr 94 (627)
+++|-|+.
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 66666653
No 121
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=65.85 E-value=1.7 Score=49.06 Aligned_cols=40 Identities=35% Similarity=0.454 Sum_probs=34.3
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
.+--+.|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 463 S~A~ySvv~YILGigDRH~~NILld~---tG~-----v~HIDFG~~f~ 502 (614)
T 3ls8_A 463 SCAGYCVITYILGVGDRHLDNLLLTK---TGK-----LFHIDFGYILG 502 (614)
T ss_dssp HHHHHHHHHHHHTCCCCCTTSEEECT---TSC-----EEECCCSSCTT
T ss_pred HHHHHhHhheeeeccCCCCcceeEcC---CCC-----EeeeehHHhhc
Confidence 45567788899999999999999964 564 99999999996
No 122
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=61.21 E-value=30 Score=30.46 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=51.8
Q ss_pred ccCCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEE-------CCeEeccCCC--------ccCCC
Q 006885 23 QHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY-------GDTVLKNDLS--------YVRHD 87 (627)
Q Consensus 23 ~~s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIf-------gGk~LeDd~t--------gI~~d 87 (627)
..+....|.|=..+|...+|.|+.++|+.+|=+++.+|.+...+.--=+| --+.|+|+.. .+..+
T Consensus 5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~ 84 (100)
T 1wgr_A 5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGD 84 (100)
T ss_dssp CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSC
T ss_pred ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCC
Confidence 34455677788899999999999999999999999999877654432222 2466777763 35556
Q ss_pred Cceeeec
Q 006885 88 SPLLLTR 94 (627)
Q Consensus 88 StLhLvr 94 (627)
+-+.+.+
T Consensus 85 nr~~F~k 91 (100)
T 1wgr_A 85 SRFVFRK 91 (100)
T ss_dssp CEEEECS
T ss_pred cEEEEec
Confidence 6666644
No 123
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=60.57 E-value=2.5 Score=48.50 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=34.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 285 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 285 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..+--++|.=|++.=.|||.+||||.. +|+ ++.||=|.||-
T Consensus 536 ~SlA~~Svv~YILGlGDRH~~NILid~---tG~-----v~HIDFG~~f~ 576 (696)
T 2x6h_A 536 KSCAGYCVITYLLGVGDRHLDNLLLTT---NGK-----LFHIDFGYILG 576 (696)
T ss_dssp HHHHHHHHHHHHHTCCCCCTTTEEECT---TSC-----EEECCCCSCTT
T ss_pred HHHHHHHHHHHHccCCCCCCcceEEeC---CCC-----EEEEeehhhhc
Confidence 345567888999999999999999974 564 99999999996
No 124
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=60.11 E-value=8 Score=45.87 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=32.4
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
.+--+.|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 790 S~A~ySvv~YILGigDRH~~NILid~---tG~-----v~HIDFG~~f~ 829 (961)
T 1e7u_A 790 SCAGYCVATFVLGIGDRHNDNIMISE---TGN-----LFHIDFGHILG 829 (961)
T ss_dssp HHHHHHHHHHHTTCCCCCGGGEEEET---TCC-----EEECCCCCC--
T ss_pred HHHHHHHHHHHccccCCCCcceEEec---CCC-----EEEEeehhhhc
Confidence 44556778899999999999999975 564 99999999996
No 125
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=59.31 E-value=2.9 Score=50.20 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=34.7
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
..--+.|.=|++.=.|||.+||||.. +|+ ++.||=|.||-
T Consensus 923 S~A~ysvv~YiLgigDRH~~NILid~---tG~-----v~HIDFG~~f~ 962 (1091)
T 3hhm_A 923 SCAGYCVATFILGIGDRHNSNIMVKD---DGQ-----LFHIDFGHFLD 962 (1091)
T ss_dssp HHHHHHHHHHHHTCCCCCTTTEEEET---TSC-----EEECCCCCCSC
T ss_pred HhhhhhheEEEEeecCCCCcceEEeC---CCC-----EEEEeehhhhc
Confidence 45567888999999999999999986 565 99999999996
No 126
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=56.68 E-value=11 Score=38.37 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=37.6
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEe
Q 006885 36 MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVL 77 (627)
Q Consensus 36 tGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~L 77 (627)
.-....+.+.+..|+..++++|++..+|++++|.|+|.+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 455678899999999999999999999999999999998555
No 127
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=56.35 E-value=36 Score=31.74 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=40.3
Q ss_pred cEEEEEeccCCCHHHHHHHHHHH--cCCCCCC------eEEEE----CCeE-eccCC-------------C----ccCCC
Q 006885 38 YVLGMELDRSDNAHTVKRKLQLA--LDVPTEE------RSLIY----GDTV-LKNDL-------------S----YVRHD 87 (627)
Q Consensus 38 ktl~~eVe~sdTV~~VK~kIqek--eGIP~eq------QrLIf----gGk~-LeDd~-------------t----gI~~d 87 (627)
..+.+.|--+|||..||+||-+. -|+|..+ -.|-+ +|+. |.|.. | +|.++
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 46899999999999999999998 4776532 23433 1433 55432 1 78888
Q ss_pred Cceeeec
Q 006885 88 SPLLLTR 94 (627)
Q Consensus 88 StLhLvr 94 (627)
++|-|+.
T Consensus 121 a~l~l~~ 127 (138)
T 2r2o_A 121 ATVALVP 127 (138)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 8888875
No 128
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=54.62 E-value=50 Score=30.37 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=41.5
Q ss_pred CCcEEEEEeccCCCHHHHHHHHHHH--cCCCC------CCeEEEEC----CeE-eccCC-C----------------ccC
Q 006885 36 MGYVLGMELDRSDNAHTVKRKLQLA--LDVPT------EERSLIYG----DTV-LKNDL-S----------------YVR 85 (627)
Q Consensus 36 tGktl~~eVe~sdTV~~VK~kIqek--eGIP~------eqQrLIfg----Gk~-LeDd~-t----------------gI~ 85 (627)
.+..+.+.|-.+|||..||+||-+. .|+|. ++..|-+. |+. |.|.. + +|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4566888999999999999999987 46654 45666552 443 55422 1 677
Q ss_pred CCCceeeec
Q 006885 86 HDSPLLLTR 94 (627)
Q Consensus 86 ~dStLhLvr 94 (627)
++++|-|+.
T Consensus 95 dgatv~l~~ 103 (127)
T 3h6n_A 95 EGASLAMSL 103 (127)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 778877764
No 129
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=53.29 E-value=40 Score=29.33 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=52.4
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEE--CCeEeccC--CC----ccCCCCceeeec
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY--GDTVLKND--LS----YVRHDSPLLLTR 94 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIf--gGk~LeDd--~t----gI~~dStLhLvr 94 (627)
.+..+|-||..+|+.+.-....++||..|..=|... +.....-+|+- =-+.|..+ .+ |+.+.++|++..
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 346899999999999988999999999999988865 44445667763 37778633 23 888888887753
No 130
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=51.04 E-value=4 Score=48.28 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=34.0
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 286 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 286 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
.+--+.|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 774 S~A~~Svv~YILGlgDRH~~NILid~---tG~-----v~HIDFG~~f~ 813 (940)
T 2wxf_A 774 SCAGYCVATYVLGIGDRHSDNIMIRE---SGQ-----LFHIDFGHFLG 813 (940)
T ss_dssp HHHHHHHHHHHHTCCCCCGGGEEEET---TSC-----EEECCCCCCTT
T ss_pred HHHHHHHHHHHhccCCCCcccEEEec---CCC-----EEEEeehhhhc
Confidence 44557788899999999999999985 564 99999999995
No 131
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=48.90 E-value=5.1 Score=48.16 Aligned_cols=39 Identities=36% Similarity=0.449 Sum_probs=32.4
Q ss_pred hhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006885 287 VHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 333 (627)
Q Consensus 287 vhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlclP 333 (627)
+--+.|.=|++.=.|||.+|||+.. +|+ ++.||=|.||-
T Consensus 927 lA~ySvv~YILGlGDRH~~NILid~---tG~-----v~HIDFG~~f~ 965 (1092)
T 2y3a_A 927 CAGYCVASYVLGIGDRHSDNIMVKK---TGQ-----LFHIDFGHILG 965 (1092)
T ss_dssp HHHHHHHHHHTTCCCCCTTTEEECT---TSC-----EEECCCSCCSS
T ss_pred HHHHHHHHHHhcCCCCCCccEEEec---CCC-----EEEEeehhhhh
Confidence 3446677788888999999999975 554 99999999995
No 132
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=45.65 E-value=38 Score=33.22 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=43.1
Q ss_pred EEEEEeccCCCHHHHHHHHHHHcCCCCC-CeEEEE-C----CeEeccC-CC----ccCCCCceee-ec
Q 006885 39 VLGMELDRSDNAHTVKRKLQLALDVPTE-ERSLIY-G----DTVLKND-LS----YVRHDSPLLL-TR 94 (627)
Q Consensus 39 tl~~eVe~sdTV~~VK~kIqekeGIP~e-qQrLIf-g----Gk~LeDd-~t----gI~~dStLhL-vr 94 (627)
.+++.+.+.+||.+|++++.+.++|+.+ +-||-. . -..|.|. .+ ++.++.+|.+ +|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 4667889999999999999999999987 578843 3 3456654 33 7888888887 65
No 133
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=45.62 E-value=43 Score=32.49 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=44.1
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHcCCCCC-CeEEE--EC---CeEeccC-CC----ccCCCCceee-ecc
Q 006885 38 YVLGMELDRSDNAHTVKRKLQLALDVPTE-ERSLI--YG---DTVLKND-LS----YVRHDSPLLL-TRN 95 (627)
Q Consensus 38 ktl~~eVe~sdTV~~VK~kIqekeGIP~e-qQrLI--fg---Gk~LeDd-~t----gI~~dStLhL-vr~ 95 (627)
..+++.+.+.+||.+|++++.+.++||.+ +-||- +. ...|+|. .+ +|.++..|.| +|+
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 34678899999999999999999999987 56883 32 2345553 33 8888888888 663
No 134
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=44.70 E-value=57 Score=26.06 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=34.3
Q ss_pred EEEeccCCCHHHHHHHHHHHcCCCC--CCeEEEECCeEeccCCCccCCCCceeee
Q 006885 41 GMELDRSDNAHTVKRKLQLALDVPT--EERSLIYGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 41 ~~eVe~sdTV~~VK~kIqekeGIP~--eqQrLIfgGk~LeDd~tgI~~dStLhLv 93 (627)
.+++ ...||.+|.+.+..+.++.. ..-.+.-+|+.+.+..+-+++++.|.++
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 3566 56799999999987543321 2234556776655444568888888886
No 135
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=44.61 E-value=14 Score=40.80 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=30.0
Q ss_pred EEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEE
Q 006885 39 VLGMELDRSDNAHTVKRKLQLALDVPTEERSLI 71 (627)
Q Consensus 39 tl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLI 71 (627)
...+.|....|+.++|++|++.+|+|+++|||-
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 346789999999999999999999999999993
No 136
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=42.56 E-value=1.2e+02 Score=24.01 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=43.0
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeeec
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 94 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLvr 94 (627)
.|+|.|.-..+ ...+++....||.+|.+++ +++++.-.+..+|..+..+. -+++++.|-++.
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-~L~~gD~V~ii~ 65 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-EIFDGDIIEVIR 65 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-BCCTTCEEEEEE
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-cCCCCCEEEEEe
Confidence 48888854322 2456777888999988765 66655556678888876555 488888888763
No 137
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=41.75 E-value=1.2e+02 Score=25.41 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=28.2
Q ss_pred CCCeEEEEEeC------CC-cEEEEEeccCCCHHHHHHHHHHHc
Q 006885 25 SGKRRVFVQTE------MG-YVLGMELDRSDNAHTVKRKLQLAL 61 (627)
Q Consensus 25 s~~mqIfVKTl------tG-ktl~~eVe~sdTV~~VK~kIqeke 61 (627)
-+.|+|.||-- .| ....+++....||.+|.+.+..+.
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRH 50 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHC
Confidence 35688999864 45 467888888889999999988874
No 138
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=40.00 E-value=70 Score=32.90 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=50.3
Q ss_pred EEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcC----CCCCCeEEEE------CCeEeccCCC----ccCCCCceeeec
Q 006885 29 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALD----VPTEERSLIY------GDTVLKNDLS----YVRHDSPLLLTR 94 (627)
Q Consensus 29 qIfVKTltGktl~~eVe~sdTV~~VK~kIqekeG----IP~eqQrLIf------gGk~LeDd~t----gI~~dStLhLvr 94 (627)
.+.|.-. +-+-+++++++.||.++-.+|.++.. .+.++--|.- .|+.|+++.+ ++++++.|+..+
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3444445 77889999999999999999998863 2456667766 2677888776 899999999975
No 139
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=39.86 E-value=56 Score=27.64 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=45.1
Q ss_pred EEEEEe--CCCcEEEEEeccCCCHHHHHHHHHHHcCCCCC-----CeEEEECCeEeccCCC----ccCCCCcee
Q 006885 29 RVFVQT--EMGYVLGMELDRSDNAHTVKRKLQLALDVPTE-----ERSLIYGDTVLKNDLS----YVRHDSPLL 91 (627)
Q Consensus 29 qIfVKT--ltGktl~~eVe~sdTV~~VK~kIqekeGIP~e-----qQrLIfgGk~LeDd~t----gI~~dStLh 91 (627)
.|+|.- -.|+++-+.|....||..|++-+.+.++++.. +-|+.-.+..|.++.. +|.+|+.|-
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEE
Confidence 344442 48999999999999999999999999988641 2244444666655442 688887664
No 140
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=39.49 E-value=89 Score=27.98 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=43.9
Q ss_pred CCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHc-CCCCCCeEEEE--CCeEeccC
Q 006885 26 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLAL-DVPTEERSLIY--GDTVLKND 80 (627)
Q Consensus 26 ~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqeke-GIP~eqQrLIf--gGk~LeDd 80 (627)
...+|-||..+|+.+.-....++||.+|..-|.... +.....-.|+- --+.|.|.
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~ 108 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADE 108 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCST
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCC
Confidence 457899999999999999999999999999998863 34445667764 47778754
No 141
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=38.40 E-value=1.2e+02 Score=26.02 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=36.7
Q ss_pred EEEEeC-CCcEEEEEeccCCCHHHHHHHHHHHcCCCCCC-eEEEECCe
Q 006885 30 VFVQTE-MGYVLGMELDRSDNAHTVKRKLQLALDVPTEE-RSLIYGDT 75 (627)
Q Consensus 30 IfVKTl-tGktl~~eVe~sdTV~~VK~kIqekeGIP~eq-QrLIfgGk 75 (627)
|.||.- .|..+.+.|+++.+-.++.++|++..+++.++ -.|-|-+-
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 445543 58999999999999999999999999998655 35666654
No 142
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=35.89 E-value=82 Score=28.49 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=39.2
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHH--cCCCCC------CeEEEEC----CeE-eccCC-C----------------ccCC
Q 006885 37 GYVLGMELDRSDNAHTVKRKLQLA--LDVPTE------ERSLIYG----DTV-LKNDL-S----------------YVRH 86 (627)
Q Consensus 37 Gktl~~eVe~sdTV~~VK~kIqek--eGIP~e------qQrLIfg----Gk~-LeDd~-t----------------gI~~ 86 (627)
...+.+.|-.+|||..||+||-+. .|+|.. +..|-+. |+. |.|.. + +|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 345888899999999999999987 466643 4466552 332 54422 1 6777
Q ss_pred CCceeeec
Q 006885 87 DSPLLLTR 94 (627)
Q Consensus 87 dStLhLvr 94 (627)
+++|-|+.
T Consensus 106 gatl~l~~ 113 (117)
T 4e74_A 106 GSVVALVS 113 (117)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 77777764
No 143
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=33.58 E-value=65 Score=25.10 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=38.6
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCccCCCCceeeec
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 94 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd~tgI~~dStLhLvr 94 (627)
|.|+|.+.+|+. +++..+.|+.++-+.|....+- ..--...+|+..+-+ +-+++++.|-++.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~~--~~vaa~vNg~lvdl~-~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLGD--HCIGAKVNHKLVPLS-YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHHH--TEEEEEETTEECCTT-CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcccc--ceEEEEECCEEeCCC-cCcCCCCEEEEEE
Confidence 678888888987 4566789999998777433210 111123466544333 3477778777763
No 144
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=32.39 E-value=35 Score=27.28 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHhccc
Q 006885 393 IFLKEAAAFGLCLADIGEMMSREF 416 (627)
Q Consensus 393 ~lLk~~a~~gLtl~eIg~~m~R~~ 416 (627)
.|+++|-+.|+|+.||..++....
T Consensus 17 ~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 17 ELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc
Confidence 678999999999999999997654
No 145
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=30.88 E-value=55 Score=32.87 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=36.8
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCC
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 65 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~ 65 (627)
...+.+.|..++|.+..+.|+++.|+.+|=.+|.++.|+..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 34588999999999999999999999999999999999973
No 146
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.62 E-value=1.1e+02 Score=31.16 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=42.0
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC-------CeEeccCCC
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG-------DTVLKNDLS 82 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg-------Gk~LeDd~t 82 (627)
+.|.|=..+|...+|.|++++|+.+|=+.+..+.+.+...-.-+|. -+.|+|...
T Consensus 32 ~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~ 93 (281)
T 4gmv_A 32 LVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHEN 93 (281)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSB
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchh
Confidence 4455556789999999999999999999999988876555555554 466777663
No 147
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=30.19 E-value=2.1e+02 Score=26.25 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=24.2
Q ss_pred cEEEEEeccCCCHHHHHHHHHHH----cCCCCC
Q 006885 38 YVLGMELDRSDNAHTVKRKLQLA----LDVPTE 66 (627)
Q Consensus 38 ktl~~eVe~sdTV~~VK~kIqek----eGIP~e 66 (627)
..+.+.|-.+|||..||+||-+. .|.|..
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys 71 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYG 71 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCS
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCC
Confidence 46899999999999999999876 388753
No 148
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=28.54 E-value=34 Score=38.93 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=39.6
Q ss_pred eCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEEC-CeEeccC
Q 006885 34 TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG-DTVLKND 80 (627)
Q Consensus 34 TltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfg-Gk~LeDd 80 (627)
..+++...+.+.+..|+..++..|++..|||++.|.|++. |..++..
T Consensus 318 ~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~ 365 (676)
T 3qa8_A 318 MVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSA 365 (676)
T ss_dssp SSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTT
T ss_pred ccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCC
Confidence 3467778899999999999999999999999999999987 4444433
No 149
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=27.88 E-value=69 Score=31.57 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=34.1
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCC
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 65 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~ 65 (627)
+.|.|...+| ++.+.|+++.|+.+|=++|..+.|+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 6788999998 789999999999999999999999973
No 150
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=27.07 E-value=97 Score=26.26 Aligned_cols=64 Identities=3% Similarity=0.060 Sum_probs=39.6
Q ss_pred cccCCCeEEEEEeCCCcEEEEEeccC-CCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC---CCccCCCCceeeec
Q 006885 22 SQHSGKRRVFVQTEMGYVLGMELDRS-DNAHTVKRKLQLALDVPTEERSLIYGDTVLKND---LSYVRHDSPLLLTR 94 (627)
Q Consensus 22 ~~~s~~mqIfVKTltGktl~~eVe~s-dTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd---~tgI~~dStLhLvr 94 (627)
+.....|+|.| +|+.+.+ ... .||.+|.+++ +++++.-.+..+|..+..+ .+.+++++.|-++.
T Consensus 15 ~~~~~~M~I~v---NGe~~el--~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 15 GHIGGRHMLQL---NGKDVKW--KKDTGTIQDLLASY----QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp -------CEEE---TTEEECC--SSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred CCCCcceEEEE---CCEEEEC--CCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 34556687766 7886554 565 7999887764 6665555667888887542 24688888887763
No 151
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=25.60 E-value=84 Score=31.40 Aligned_cols=40 Identities=8% Similarity=-0.051 Sum_probs=35.7
Q ss_pred CCCeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCC
Q 006885 25 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 65 (627)
Q Consensus 25 s~~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~ 65 (627)
...+.+.|..++| ++.+.|+++.|+.+|=++|..+.|+..
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCC
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCC
Confidence 4457899999999 899999999999999999999999973
No 152
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=25.38 E-value=1.3e+02 Score=23.37 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=37.2
Q ss_pred CCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC---CCccCCCCceeeec
Q 006885 35 EMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND---LSYVRHDSPLLLTR 94 (627)
Q Consensus 35 ltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQrLIfgGk~LeDd---~tgI~~dStLhLvr 94 (627)
++|+.+. +....||.+|.+++ +++...-.+..+|..+..+ .+-+++++.|.++.
T Consensus 5 vNg~~~~--~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 5 FNDQAMQ--CAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp ESSCEEC--CCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred ECCEEEE--cCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 4788764 45678999998765 5665555667788877532 24588888887763
No 153
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=25.06 E-value=85 Score=27.58 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCCeEEEEEeCC-------CcEEEEEeccCCCHHHHHHHHHHHcCCCCCCe-----EEEECC
Q 006885 25 SGKRRVFVQTEM-------GYVLGMELDRSDNAHTVKRKLQLALDVPTEER-----SLIYGD 74 (627)
Q Consensus 25 s~~mqIfVKTlt-------Gktl~~eVe~sdTV~~VK~kIqekeGIP~eqQ-----rLIfgG 74 (627)
++-+.|.|.--+ +.++++-|.++.+..++..+|.+++++++.+. +|-|.+
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 344566665432 66899999999999999999999998763332 565654
No 154
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.99 E-value=78 Score=25.83 Aligned_cols=54 Identities=15% Similarity=0.001 Sum_probs=36.0
Q ss_pred hHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcccCCCCCCCChHHHHHHHHHHHHh
Q 006885 371 GMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREFRGHAEAPSELEFICIEARRLLE 438 (627)
Q Consensus 371 ~~Lr~~L~~lr~~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~~~~~A~~~~~ 438 (627)
+.|+..+..|.+.+.++|.+.- ..|+|..|||.+|--.- +.+...+..|++.+.
T Consensus 29 ~~l~~~l~~L~~~~r~vl~l~~-------~~g~s~~eIA~~lgis~-------~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 29 LLIADALAQLSAEHRAVIQRSY-------YRGWSTAQIATDLGIAE-------GTVKSRLHYAVRALR 82 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH-------TSCCCHHHHHHHHTSCH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH-------HcCCCHHHHHHHHCcCH-------HHHHHHHHHHHHHHH
Confidence 4455555555676666654433 48999999999986542 667777777776654
No 155
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=24.00 E-value=1e+02 Score=30.26 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.0
Q ss_pred Ccccceecc-CCCHHHHHHHHHHHHhhhh
Q 006885 575 ASTSFVKLA-DMNEEEWAQYLEKFQKLLY 602 (627)
Q Consensus 575 ~~~~~~~~~-~~~~~~w~~~~~~~~~~l~ 602 (627)
+.+-||++. +++++|=...-..+|-+|.
T Consensus 75 ~lMmFV~v~g~~Se~Ete~it~lWQtsL~ 103 (195)
T 2kgl_A 75 TLMMFVTVSGNPTEKETEEITSLWQGSLF 103 (195)
T ss_dssp CCEEEEESSSCSCHHHHHHHHHHHHHHGG
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 678999998 8999987777777887765
No 156
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=23.83 E-value=2.5e+02 Score=22.67 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=37.9
Q ss_pred CC-cEEEEEeccCCCHHHHHHHHHHHcC-CC----C------CCeEEEECCeEeccCCCccCCCCceeee
Q 006885 36 MG-YVLGMELDRSDNAHTVKRKLQLALD-VP----T------EERSLIYGDTVLKNDLSYVRHDSPLLLT 93 (627)
Q Consensus 36 tG-ktl~~eVe~sdTV~~VK~kIqekeG-IP----~------eqQrLIfgGk~LeDd~tgI~~dStLhLv 93 (627)
.| +...+++....||.+|.+.+..+.. +. . ..-.+.-+|+....+ +-+++++.|.+.
T Consensus 15 ~g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-~~l~~gDeV~i~ 83 (89)
T 3po0_A 15 AGSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-EATAAGDELALF 83 (89)
T ss_dssp HTCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-SBCCTTCEEEEE
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-cccCCCCEEEEE
Confidence 45 5778888888899999999988752 10 0 013455666665543 347777777775
No 157
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=22.70 E-value=1e+02 Score=31.68 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=36.2
Q ss_pred CeEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCC
Q 006885 27 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 65 (627)
Q Consensus 27 ~mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~ 65 (627)
.+.+.|...+|....+.|+++.|+.+|=++|..+.|+..
T Consensus 85 ~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC
T ss_pred eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 478889999999999999999999999999999999973
No 158
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=20.87 E-value=1.9e+02 Score=27.91 Aligned_cols=42 Identities=14% Similarity=-0.012 Sum_probs=35.1
Q ss_pred eEEEEEeCCCcEEEEEeccCCCHHHHHHHHHHHcCCCCCCeE
Q 006885 28 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERS 69 (627)
Q Consensus 28 mqIfVKTltGktl~~eVe~sdTV~~VK~kIqekeGIP~eqQr 69 (627)
+.|.|=..+|.+.++.|+++.|+.+|-+.|.++.+++.+...
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~ 76 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDW 76 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTE
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCe
Confidence 445566778999999999999999999999999998765443
Done!