Query 006889
Match_columns 627
No_of_seqs 306 out of 1844
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 15:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 3E-143 6E-148 1234.5 59.9 615 2-620 144-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 2E-130 4E-135 1132.2 58.3 569 8-617 150-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 1.2E-54 2.7E-59 464.7 20.9 254 8-291 113-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 2E-49 4.2E-54 414.0 14.0 193 7-212 101-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 6.2E-41 1.4E-45 352.6 17.9 189 8-216 114-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 3.1E-39 6.6E-44 324.7 15.3 214 253-482 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 4.7E-21 1E-25 156.7 6.7 69 544-613 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.4 0.013 2.8E-07 50.3 7.3 61 527-610 20-82 (101)
9 PF12690 BsuPI: Intracellular 95.4 0.11 2.4E-06 43.5 8.6 67 528-608 2-81 (82)
10 PF10633 NPCBM_assoc: NPCBM-as 94.6 0.17 3.7E-06 41.7 7.5 65 527-609 6-73 (78)
11 PF14874 PapD-like: Flagellar- 92.0 1.2 2.7E-05 38.4 9.2 75 527-607 21-95 (102)
12 cd00407 Urease_beta Urease bet 90.5 0.46 1E-05 40.9 4.7 51 528-582 20-82 (101)
13 PRK13202 ureB urease subunit b 89.4 0.65 1.4E-05 40.1 4.7 50 529-582 22-83 (104)
14 TIGR00192 urease_beta urease, 89.3 0.67 1.5E-05 39.9 4.7 51 528-582 20-82 (101)
15 PRK13203 ureB urease subunit b 88.5 0.79 1.7E-05 39.5 4.6 51 528-582 20-82 (102)
16 PF00699 Urease_beta: Urease b 87.4 0.77 1.7E-05 39.5 3.9 51 528-582 19-81 (100)
17 PRK13201 ureB urease subunit b 87.1 1.1 2.3E-05 40.5 4.8 51 528-582 20-82 (136)
18 PRK13205 ureB urease subunit b 86.2 1.2 2.7E-05 41.0 4.7 51 528-582 20-82 (162)
19 PRK13204 ureB urease subunit b 85.6 1.3 2.9E-05 40.9 4.7 51 528-582 43-105 (159)
20 PRK13198 ureB urease subunit b 84.9 1.5 3.3E-05 40.5 4.7 51 528-582 48-110 (158)
21 COG0486 ThdF Predicted GTPase 83.1 25 0.00053 38.9 13.8 96 102-216 60-171 (454)
22 COG0832 UreB Urea amidohydrola 81.5 2.3 5.1E-05 36.5 4.2 51 528-582 20-82 (106)
23 PF07610 DUF1573: Protein of u 80.7 3.7 7.9E-05 30.1 4.6 43 531-582 1-44 (45)
24 PRK13192 bifunctional urease s 80.2 2.6 5.6E-05 41.0 4.5 51 528-582 129-191 (208)
25 PF13473 Cupredoxin_1: Cupredo 79.7 5.4 0.00012 34.6 6.2 40 529-584 44-83 (104)
26 PF05506 DUF756: Domain of unk 79.3 8.1 0.00018 32.6 7.0 46 529-585 21-67 (89)
27 PF00345 PapD_N: Pili and flag 77.1 6.5 0.00014 35.1 6.1 54 529-585 17-73 (122)
28 PRK13986 urease subunit alpha; 76.6 3.7 8.1E-05 40.4 4.5 51 528-582 125-187 (225)
29 TIGR02695 azurin azurin. Azuri 76.3 5 0.00011 36.3 4.9 53 529-585 26-99 (125)
30 PF07385 DUF1498: Protein of u 75.5 3.9 8.5E-05 40.5 4.4 59 533-597 111-180 (225)
31 PF04744 Monooxygenase_B: Mono 74.2 6.5 0.00014 41.8 5.8 53 527-584 264-334 (381)
32 PF06030 DUF916: Bacterial pro 72.8 13 0.00029 33.5 6.9 57 527-585 28-103 (121)
33 COG1470 Predicted membrane pro 71.8 4.7 0.0001 44.1 4.3 83 527-623 285-375 (513)
34 PF00927 Transglut_C: Transglu 67.1 9.9 0.00021 33.1 4.7 59 527-585 16-76 (107)
35 COG1470 Predicted membrane pro 65.8 22 0.00047 39.2 7.7 81 527-623 398-483 (513)
36 PF14796 AP3B1_C: Clathrin-ada 64.9 19 0.00042 33.5 6.3 54 527-585 86-140 (145)
37 TIGR01759 MalateDH-SF1 malate 60.1 9.1 0.0002 40.7 3.7 56 332-393 75-134 (323)
38 PF14016 DUF4232: Protein of u 59.1 27 0.00059 31.6 6.3 57 527-585 19-82 (131)
39 cd03708 GTPBP_III Domain III o 58.1 64 0.0014 26.7 7.9 76 527-610 5-82 (87)
40 PF09624 DUF2393: Protein of u 57.7 29 0.00063 32.2 6.3 59 527-585 63-133 (149)
41 COG1160 Predicted GTPases [Gen 57.0 29 0.00062 38.3 6.9 47 328-387 75-121 (444)
42 TIGR01756 LDH_protist lactate 52.4 12 0.00027 39.5 3.1 56 332-393 56-115 (313)
43 PRK13211 N-acetylglucosamine-b 49.9 52 0.0011 36.9 7.6 59 527-610 328-386 (478)
44 TIGR03079 CH4_NH3mon_ox_B meth 49.1 40 0.00086 36.0 6.1 54 527-585 283-354 (399)
45 PF06858 NOG1: Nucleolar GTP-b 48.0 50 0.0011 25.8 5.0 24 363-386 31-55 (58)
46 PRK05442 malate dehydrogenase; 47.6 20 0.00043 38.1 3.9 56 332-393 76-135 (326)
47 cd00704 MDH Malate dehydrogena 47.3 19 0.00042 38.2 3.7 56 332-393 72-131 (323)
48 PF07495 Y_Y_Y: Y_Y_Y domain; 47.3 24 0.00051 27.5 3.4 11 600-610 36-46 (66)
49 PLN02303 urease 47.2 22 0.00048 42.2 4.4 50 529-582 151-212 (837)
50 PLN00135 malate dehydrogenase 47.0 20 0.00043 37.9 3.7 56 332-393 54-113 (309)
51 PF06510 DUF1102: Protein of u 46.6 97 0.0021 28.8 7.5 64 517-585 59-124 (146)
52 cd01338 MDH_choloroplast_like 45.7 21 0.00046 37.9 3.7 56 332-393 74-133 (322)
53 cd00938 HisRS_RNA HisRS_RNA bi 43.0 45 0.00098 24.6 3.9 31 187-217 12-42 (45)
54 PF05753 TRAP_beta: Translocon 42.9 1.1E+02 0.0025 29.5 7.9 80 527-613 39-127 (181)
55 cd01336 MDH_cytoplasmic_cytoso 42.2 25 0.00054 37.4 3.6 56 332-393 74-133 (325)
56 cd05290 LDH_3 A subgroup of L- 40.8 30 0.00064 36.5 3.9 57 332-393 64-124 (307)
57 PF00056 Ldh_1_N: lactate/mala 40.8 9.7 0.00021 35.2 0.2 54 333-393 66-123 (141)
58 TIGR03096 nitroso_cyanin nitro 40.4 82 0.0018 29.0 6.1 16 570-585 95-110 (135)
59 PF10087 DUF2325: Uncharacteri 39.7 80 0.0017 26.9 5.8 40 330-384 42-81 (97)
60 PRK09918 putative fimbrial cha 38.9 1E+02 0.0022 31.0 7.3 47 529-584 41-93 (230)
61 TIGR01757 Malate-DH_plant mala 38.8 22 0.00048 38.7 2.6 56 332-393 116-175 (387)
62 TIGR01758 MDH_euk_cyt malate d 38.6 30 0.00064 36.8 3.5 56 332-393 71-130 (324)
63 COG0039 Mdh Malate/lactate deh 37.9 33 0.00071 36.3 3.6 57 332-393 65-123 (313)
64 PF06205 GT36_AF: Glycosyltran 37.3 23 0.0005 30.1 2.0 26 558-585 59-84 (90)
65 PRK13533 7-cyano-7-deazaguanin 37.2 33 0.00072 38.6 3.7 48 132-180 73-120 (487)
66 cd01857 HSR1_MMR1 HSR1/MMR1. 35.2 75 0.0016 28.9 5.2 18 328-345 3-20 (141)
67 COG1361 S-layer domain [Cell e 34.4 1E+02 0.0022 34.8 7.1 58 527-585 168-226 (500)
68 PLN00112 malate dehydrogenase 34.0 34 0.00073 38.0 3.1 56 332-393 172-231 (444)
69 TIGR01772 MDH_euk_gproteo mala 34.0 48 0.001 35.0 4.1 55 332-393 63-121 (312)
70 PF06280 DUF1034: Fn3-like dom 33.4 34 0.00074 30.0 2.5 59 527-585 9-80 (112)
71 PRK00286 xseA exodeoxyribonucl 33.2 1.4E+02 0.003 33.0 7.9 58 325-394 179-238 (438)
72 PRK05086 malate dehydrogenase; 32.9 38 0.00081 35.8 3.1 56 332-393 65-123 (312)
73 PRK15249 fimbrial chaperone pr 32.4 96 0.0021 31.7 5.9 54 529-584 45-103 (253)
74 PLN02602 lactate dehydrogenase 32.3 39 0.00085 36.3 3.2 54 333-393 102-159 (350)
75 cd00300 LDH_like L-lactate deh 32.1 39 0.00085 35.4 3.1 57 332-393 62-120 (300)
76 PRK09926 putative chaperone pr 31.6 1E+02 0.0022 31.3 6.0 55 529-585 42-100 (246)
77 cd01337 MDH_glyoxysomal_mitoch 31.4 45 0.00097 35.3 3.4 55 332-393 64-122 (310)
78 PF08530 PepX_C: X-Pro dipepti 30.9 1.1E+02 0.0024 30.0 6.0 56 527-585 97-162 (218)
79 PRK15188 fimbrial chaperone pr 30.1 1.8E+02 0.0038 29.4 7.2 50 529-585 44-98 (228)
80 PRK13555 azoreductase; Provisi 30.0 1.2E+02 0.0026 30.0 6.0 38 327-375 80-117 (208)
81 PRK13556 azoreductase; Provisi 30.0 1.3E+02 0.0029 29.4 6.3 37 328-375 81-117 (208)
82 TIGR00237 xseA exodeoxyribonuc 29.3 2E+02 0.0043 31.9 8.2 57 326-394 174-233 (432)
83 TIGR03352 VI_chp_3 type VI sec 29.2 1.2E+02 0.0026 28.3 5.4 25 561-585 80-104 (146)
84 cd06557 KPHMT-like Ketopantoat 29.2 6.4E+02 0.014 25.8 11.2 17 136-152 29-45 (254)
85 PF11906 DUF3426: Protein of u 28.3 2.1E+02 0.0046 26.2 7.1 59 527-585 69-136 (149)
86 PRK15295 fimbrial assembly cha 28.1 2E+02 0.0043 28.9 7.2 55 529-585 36-91 (226)
87 COG2003 RadC DNA repair protei 28.0 45 0.00098 33.3 2.5 52 99-151 158-210 (224)
88 TIGR01451 B_ant_repeat conserv 27.9 79 0.0017 23.9 3.3 21 527-548 13-33 (53)
89 TIGR01771 L-LDH-NAD L-lactate 27.8 49 0.0011 34.7 3.0 55 332-393 60-118 (299)
90 PF11611 DUF4352: Domain of un 27.8 71 0.0015 28.0 3.6 59 527-585 37-101 (123)
91 TIGR01763 MalateDH_bact malate 27.7 51 0.0011 34.6 3.1 53 334-393 67-123 (305)
92 PRK15224 pili assembly chapero 27.1 1.9E+02 0.0042 29.3 6.9 50 529-585 45-98 (237)
93 PRK15299 fimbrial chaperone pr 27.1 1.5E+02 0.0032 29.8 6.2 55 529-585 39-95 (227)
94 PF01345 DUF11: Domain of unkn 27.1 73 0.0016 25.7 3.3 18 527-544 42-59 (76)
95 cd05294 LDH-like_MDH_nadp A la 26.8 65 0.0014 33.9 3.7 54 333-393 69-126 (309)
96 PF03808 Glyco_tran_WecB: Glyc 26.6 2.3E+02 0.0049 27.0 7.1 40 335-393 100-139 (172)
97 PF09912 DUF2141: Uncharacteri 26.4 1.1E+02 0.0023 27.2 4.4 62 532-598 1-67 (112)
98 PF07233 DUF1425: Protein of u 26.4 4E+02 0.0088 22.6 8.0 57 527-585 25-82 (94)
99 PF00009 GTP_EFTU: Elongation 26.3 2.2E+02 0.0047 27.1 7.0 48 327-387 84-131 (188)
100 PF00703 Glyco_hydro_2: Glycos 26.0 2.5E+02 0.0055 23.4 6.7 63 527-594 19-81 (110)
101 PF09851 SHOCT: Short C-termin 25.2 1.2E+02 0.0026 20.3 3.4 25 186-210 6-30 (31)
102 COG2022 ThiG Uncharacterized e 25.2 2.1E+02 0.0045 29.0 6.5 82 100-197 145-236 (262)
103 PRK15218 fimbrial chaperone pr 24.7 2.4E+02 0.0053 28.3 7.1 55 529-585 35-93 (226)
104 TIGR03566 FMN_reduc_MsuE FMN r 24.5 1.7E+02 0.0036 27.8 5.7 52 326-388 58-111 (174)
105 PF01926 MMR_HSR1: 50S ribosom 24.2 1.3E+02 0.0029 25.9 4.7 45 328-386 71-115 (116)
106 PF02601 Exonuc_VII_L: Exonucl 24.1 2.4E+02 0.0052 29.6 7.4 57 325-394 58-121 (319)
107 TIGR02231 conserved hypothetic 24.1 1.9E+02 0.0041 32.9 7.0 57 527-585 443-516 (525)
108 PF02450 LCAT: Lecithin:choles 24.0 1.1E+02 0.0023 33.5 4.7 61 367-427 107-175 (389)
109 cd05291 HicDH_like L-2-hydroxy 23.6 71 0.0015 33.5 3.2 54 333-393 65-122 (306)
110 PLN00106 malate dehydrogenase 23.6 1.6E+02 0.0034 31.3 5.8 87 331-423 81-179 (323)
111 PTZ00325 malate dehydrogenase; 23.4 67 0.0015 34.1 3.0 57 331-393 71-130 (321)
112 PRK15233 putative fimbrial cha 22.9 2.7E+02 0.0058 28.4 7.1 49 529-585 57-110 (246)
113 COG4454 Uncharacterized copper 22.8 92 0.002 29.3 3.4 17 569-585 116-132 (158)
114 PRK15246 fimbrial assembly cha 22.8 2.3E+02 0.0049 28.7 6.5 54 529-584 27-84 (233)
115 PF09544 DUF2381: Protein of u 22.7 4.2E+02 0.0091 27.7 8.7 57 527-585 203-260 (289)
116 PF00553 CBM_2: Cellulose bind 22.6 1.1E+02 0.0023 26.4 3.6 15 527-541 14-28 (101)
117 PRK15211 fimbrial chaperone pr 22.4 2.9E+02 0.0062 27.9 7.1 49 529-585 39-93 (229)
118 COG1182 AcpD Acyl carrier prot 22.4 2.5E+02 0.0053 27.8 6.3 65 329-412 80-144 (202)
119 PF06165 Glyco_transf_36: Glyc 22.2 35 0.00077 30.1 0.5 17 471-487 31-47 (110)
120 cd09030 DUF1425 Putative perip 22.2 5E+02 0.011 22.2 8.8 53 527-585 33-90 (101)
121 PF11614 FixG_C: IG-like fold 22.2 1.8E+02 0.0039 25.6 5.1 50 529-585 34-84 (118)
122 PRK00170 azoreductase; Reviewe 22.1 1.8E+02 0.0039 28.0 5.6 38 326-374 76-113 (201)
123 cd03707 EFTU_III Domain III of 22.0 4.6E+02 0.0099 21.6 8.6 67 527-600 5-78 (90)
124 PRK13534 7-cyano-7-deazaguanin 20.9 1.1E+02 0.0023 35.8 4.2 48 132-180 72-119 (639)
125 PF05690 ThiG: Thiazole biosyn 20.7 2E+02 0.0044 29.1 5.5 83 98-196 136-228 (247)
126 PF09373 PMBR: Pseudomurein-bi 20.0 1.2E+02 0.0026 20.6 2.7 25 194-218 2-26 (33)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=2.8e-143 Score=1234.53 Aligned_cols=615 Identities=49% Similarity=0.960 Sum_probs=533.9
Q ss_pred CCCccccceeeCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCC---------CCCCceEEeecccccccCC
Q 006889 2 YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT---------GSRLKVAACCKHYTAYDLD 72 (627)
Q Consensus 2 ~~~~~~G~~~~aP~~di~r~p~~gr~~e~fgeDP~l~~~~a~a~v~GlQ~~~---------~~~~gv~a~~KHF~g~g~~ 72 (627)
||.+.+|+++|+|++||+|||||||++|||||||+|+++|+.|||+|||+.+ .++.+|+||+||||||+++
T Consensus 144 g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e 223 (779)
T PLN03080 144 YNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLE 223 (779)
T ss_pred ccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCcc
Confidence 3444468888999999999999999999999999999999999999999842 1344599999999999998
Q ss_pred CCCCCCcccccccCCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHhhhcCCCeEEEcChhhhh
Q 006889 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG 152 (627)
Q Consensus 73 ~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~ 152 (627)
.+.+..|...++.+++++|+|+||+||+++|++|.+.+||||||++||+|+|.|++||+. ||+||||+|+|||||++|.
T Consensus 224 ~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~ 302 (779)
T PLN03080 224 KWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVA 302 (779)
T ss_pred ccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHH
Confidence 766778888899999999999999999999999988899999999999999999999986 9999999999999999999
Q ss_pred hhhccccccCChHHHHHHHHHcCCCcCChhhHHHHHHHHHhCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCCCCCC
Q 006889 153 VLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG 232 (627)
Q Consensus 153 ~~~~~~~~~~~~~~a~~~al~AG~D~~~~~~~~~~l~~av~~G~~~~~~id~av~Ril~~k~~lGlf~~~p~~~~~~~~~ 232 (627)
.+...|++..+.++++++||+||+||+|+.++.+.|.+||++|+|++++||+||+|||++|+++|+|+.+|...++..+.
T Consensus 303 ~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~ 382 (779)
T PLN03080 303 TIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLG 382 (779)
T ss_pred HhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccc
Confidence 99988888778999999999999999998888889999999999999999999999999999999999544333444445
Q ss_pred CCCCCCHHHHHHHHHHHhccceeeccCCcCCCccCCCCcEEEEEccCCccccccccccccCCCCcCCHHHHHHHhh-cee
Q 006889 233 PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA-KTI 311 (627)
Q Consensus 233 ~~~v~~~~~~~la~e~A~eSiVLLKN~~~~LPL~~~~~~~vaviG~~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~-~~~ 311 (627)
...+++++|+++|+|+|++|||||||++++|||++.+.++|+||||+|+....++|+|++.+++..+++++|+++. .+.
T Consensus 383 ~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~ 462 (779)
T PLN03080 383 PNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTS 462 (779)
T ss_pred ccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcce
Confidence 5678899999999999999999999999999998765579999999999988888889888888899999999975 467
Q ss_pred eeccCCccccCCccchHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCcce
Q 006889 312 HQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV 391 (627)
Q Consensus 312 y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~~g~P~ 391 (627)
|..||....+.+...+++|+++|++||++||++|.+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|+
T Consensus 463 y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv 542 (779)
T PLN03080 463 FAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPV 542 (779)
T ss_pred eccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCcee
Confidence 88888655444456788999999999999999999988999999999999999999999999987777899999999999
Q ss_pred ecccccCCCCccEEEEccCCcchhHHHHHHHHhCCCCC-CCCccccCcccccCCCCCccccccc--cCCCCCCccccCCC
Q 006889 392 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANP-GKLPMTWYPQDYVSRLPMTDMRMRA--ARGYPGRTYRFYKG 468 (627)
Q Consensus 392 ~l~~~~~~~~v~Ail~a~~~G~e~g~AlAdVL~G~~nP-GkLPvT~~p~~~~~~~p~~~~~~~~--~~~~~~~~Yr~~~~ 468 (627)
+|+|+.+.++++|||++|||||++|+|+||||||++|| ||||+||||+++ +++|++++++++ ..+|++++||||+.
T Consensus 543 ~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~ 621 (779)
T PLN03080 543 DVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTG 621 (779)
T ss_pred eccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCC
Confidence 99998766789999999999999999999999999999 999999999988 789998887764 45689999999999
Q ss_pred CcccccCcCCCCCCceeCCCccCCCccccccccccccccccc------ccccccccc-cCCCCCceEEEEEEEEeCCCCC
Q 006889 469 PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTI------SSNAIRVAH-TNCNDAMSLGLHVDIKNTGDMA 541 (627)
Q Consensus 469 ~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~v~v~VtNtG~~~ 541 (627)
+|+||||||||||||+|++++++...+......... ..... ....+.+.+ ..|+.. .++|+|+|||||+++
T Consensus 622 ~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~VtNtG~~~ 699 (779)
T PLN03080 622 DVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDS-ISRKPLLQRRDELDYVQIEDIASCESL-RFNVHISVSNVGEMD 699 (779)
T ss_pred CcceeccCCCccceeEeccccccccccccccccccc-cccccccccccccccccccccccCCCc-eEEEEEEEEECCccc
Confidence 999999999999999999987542111110000000 00000 000000111 112322 489999999999999
Q ss_pred cceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeEEEEEEeCCCceEEEEE
Q 006889 542 GTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQA 620 (627)
Q Consensus 542 G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~ 620 (627)
|+||||||+++|.+. .+|.|||+||+||+|+||||++|+|+|+.+++|++||++++|++|+|+|+|+||+++|++.+++
T Consensus 700 G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 700 GSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred CcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEeC
Confidence 999999999999875 8999999999999999999999999999657999999999999999999999999999988763
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=1.9e-130 Score=1132.18 Aligned_cols=569 Identities=31% Similarity=0.501 Sum_probs=489.1
Q ss_pred ccee-eCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCCC-CCCceEEeecccccccCCCCCCCCccccccc
Q 006889 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTG-SRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (627)
Q Consensus 8 G~~~-~aP~~di~r~p~~gr~~e~fgeDP~l~~~~a~a~v~GlQ~~~~-~~~gv~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (627)
|+|+ |+|++||.|||+|||++|||||||+++++|+.|+|+|||+++. +..||++|+|||||||..+ .+|...++.
T Consensus 150 Gin~~laPv~Dv~r~p~~gr~~rsfgeDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~ 226 (765)
T PRK15098 150 GLNMTWAPMVDISRDPRWGRASEGFGEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVE---GGRDYNTVD 226 (765)
T ss_pred CCCEEeeCcccccCCCCccccccCcCCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCcc---cCccCccCc
Confidence 9999 9999999999999999999999999999999999999998631 2347999999999999532 245555678
Q ss_pred CCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHhhhcCCCeEEEcChhhhhhhhccccccCChH
Q 006889 86 VSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE 165 (627)
Q Consensus 86 ~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~ 165 (627)
+++++|+|+||+||+++|++| +.+||||||.+||+|+|.|+++|+++||+||||+|+|||||++|..+.. |++..+.+
T Consensus 227 ~~~~~l~e~~l~PF~~ai~ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~~~ 304 (765)
T PRK15098 227 MSPQRMFNDYLPPYKAGLDAG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAADPE 304 (765)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCCHH
Confidence 899999999999999999877 8999999999999999999999999999999999999999999998874 67777889
Q ss_pred HHHHHHHHcCCCcCChhh-HHHHHHHHHhCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCC--C-CCCCCCCCCHHH
Q 006889 166 EAAADAIKAGLDLDCGPF-LAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPF--G-NLGPRDVCTPAH 241 (627)
Q Consensus 166 ~a~~~al~AG~D~~~~~~-~~~~l~~av~~G~~~~~~id~av~Ril~~k~~lGlf~~~p~~~~~--~-~~~~~~v~~~~~ 241 (627)
+++++||+||+||+|.+. +.+.|.+||++|.+++++||+||+|||++|+++|+|+ +|+.... . ......+.+++|
T Consensus 305 ea~~~Al~AG~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~~~ 383 (765)
T PRK15098 305 DAVRLALKSGIDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESRLH 383 (765)
T ss_pred HHHHHHHHcCCCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccccCCHHH
Confidence 999999999999999654 4467899999999999999999999999999999999 6652210 0 001123457899
Q ss_pred HHHHHHHHhccceeeccCCcCCCccCCCCcEEEEEccCCccccccccccc--cCCCCcCCHHHHHHHhh----ceeeecc
Q 006889 242 QQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA--GVACGYTTPLQGISRYA----KTIHQAG 315 (627)
Q Consensus 242 ~~la~e~A~eSiVLLKN~~~~LPL~~~~~~~vaviG~~a~~~~~~~G~~~--g~~~~~~t~~~~l~~~~----~~~y~~g 315 (627)
+++++++|++|||||||++++|||++. +||+||||+++......|+|+ +.+.+.++++++|+++. .+.|..|
T Consensus 384 ~~~a~~~a~~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G 461 (765)
T PRK15098 384 RKEAREVARESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKG 461 (765)
T ss_pred HHHHHHHHHhcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecc
Confidence 999999999999999999999999853 699999999988765566664 56677899999999874 3568888
Q ss_pred CCcccc-------------------CCccchHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHh
Q 006889 316 CFGVAC-------------------NGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKA 376 (627)
Q Consensus 316 ~~~~~~-------------------~~~~~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~ 376 (627)
|..... ..+..+++|+++|++||++||++|.+...++|+.||.+|.||+.|.+||++|++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~ 541 (765)
T PRK15098 462 ANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT 541 (765)
T ss_pred cccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh
Confidence 742110 1124578899999999999999999888899999999999999999999999874
Q ss_pred cCCCEEEEEecCcceecccccCCCCccEEEEccCCcchhHHHHHHHHhCCCCC-CCCccccCcccccCCCCCcccccccc
Q 006889 377 SRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANP-GKLPMTWYPQDYVSRLPMTDMRMRAA 455 (627)
Q Consensus 377 ~~kpvVVVl~~g~P~~l~~~~~~~~v~Ail~a~~~G~e~g~AlAdVL~G~~nP-GkLPvT~~p~~~~~~~p~~~~~~~~~ 455 (627)
+||+|||+++|+|++|+|+. ++++|||++|+||+++|+|+||||||++|| ||||+|| |++. +++|.++......
T Consensus 542 -~~~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~ 616 (765)
T PRK15098 542 -GKPLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTG 616 (765)
T ss_pred -CcCEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCC
Confidence 67999999999999999873 589999999999999999999999999999 9999997 8887 7888653211111
Q ss_pred CCC-----CCCccccCCC--CcccccCcCCCCCCceeCCCccCCCcccccccccccccccccccccccccccCCCCCceE
Q 006889 456 RGY-----PGRTYRFYKG--PVVFPFGHGMSYTTFAHTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSL 528 (627)
Q Consensus 456 ~~~-----~~~~Yr~~~~--~~~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (627)
..| .+.+||||+. +|+||||||||||+|+||++++.+. . .. .+. .+
T Consensus 617 ~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~~--------------------~--~~----~~~-~i 669 (765)
T PRK15098 617 RPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSSP--------------------T--MK----RDG-KV 669 (765)
T ss_pred CccccCcccccccceeccCCCccccccCCCCCccEEeeccEeccc--------------------c--cc----CCC-eE
Confidence 112 2236899986 5999999999999999999986420 0 11 112 69
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeEEEE
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSL 607 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i 607 (627)
+|+|+|||||+++|+||||||+++|.++ .+|.|||+||+||+|+|||+++|+|+|+. ++|++||.+++|++|+|+|+|
T Consensus 670 ~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v 748 (765)
T PRK15098 670 TASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNV 748 (765)
T ss_pred EEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEE
Confidence 9999999999999999999999999876 89999999999999999999999999999 999999999999999999999
Q ss_pred EEeCCCceEE
Q 006889 608 HIGDLKHSIS 617 (627)
Q Consensus 608 ~vG~ss~~~~ 617 (627)
+||+||++++
T Consensus 749 ~vG~ss~d~~ 758 (765)
T PRK15098 749 FIGLDSARVK 758 (765)
T ss_pred EEECCCCccc
Confidence 9999999875
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-54 Score=464.75 Aligned_cols=254 Identities=31% Similarity=0.518 Sum_probs=221.8
Q ss_pred ccee-eCccccccCCCCCCccccc-CCCCHHHHHHHHHHHHHHHhcCCCCCCceEEeecccccccCCCCCCCCccccccc
Q 006889 8 GLTY-WSPNVNIFRDPRWGRGQET-PGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNAR 85 (627)
Q Consensus 8 G~~~-~aP~~di~r~p~~gr~~e~-fgeDP~l~~~~a~a~v~GlQ~~~~~~~gv~a~~KHF~g~g~~~~~~~~r~~~~~~ 85 (627)
|+|+ |+||+||.|||+|||..|+ |||||++++.|+.|||+|||+. ||++|+|||||||..+ .+++..+++
T Consensus 113 Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~-----gv~at~KHFpGhG~~~---~dsh~~~~~ 184 (397)
T COG1472 113 GINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA-----GVAATIKHFPGHGAVE---GDSHYGLLP 184 (397)
T ss_pred CCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC-----CceeeeccccCCCCCc---CCcccccCC
Confidence 9999 9999999999999998888 9999999999999999999998 8999999999998543 234333378
Q ss_pred CCHHHHHHhccHHHHHHHHcCC--CceEEeccccCCCcccccCHHHHHHHHhhhcCCCeEEEcChhhhhhhhccccccCC
Q 006889 86 VSKQDLEDTYNVPFKACVVEGK--VASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (627)
Q Consensus 86 ~~~~~l~e~~l~pF~~ai~~g~--~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~ 163 (627)
++++.|+|+|+.||+.+++.+. +.++|++||++||.|||.|+++|++|||++|||+|+|||||++|.++...+ .+
T Consensus 185 v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~---g~ 261 (397)
T COG1472 185 IDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH---GS 261 (397)
T ss_pred CChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---cC
Confidence 8999999999999999999986 889999999999999999999999999999999999999999999877643 35
Q ss_pred hHHHHHHHHHcCCCcCChhh--HHHHHHHHHhCCCCCHHHHHHHhhhhHHHHHHhCCCCCCCCCCCCCCCCCCCCCCHHH
Q 006889 164 PEEAAADAIKAGLDLDCGPF--LAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAH 241 (627)
Q Consensus 164 ~~~a~~~al~AG~D~~~~~~--~~~~l~~av~~G~~~~~~id~av~Ril~~k~~lGlf~~~p~~~~~~~~~~~~v~~~~~ 241 (627)
..+.+.++++|||||+|.+. +...+..+...+ +++++++++++|||++|+++|+|+ +|+. .+|
T Consensus 262 ~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~~~-------------~~~ 326 (397)
T COG1472 262 AADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NPYS-------------SEH 326 (397)
T ss_pred HHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CCCc-------------hhh
Confidence 66777889999999998543 223334444445 999999999999999999999999 6652 189
Q ss_pred HHHHHHHHhccceeeccCCcCCCccCCCCcEEEEEccCCccccccccccc
Q 006889 242 QQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 291 (627)
Q Consensus 242 ~~la~e~A~eSiVLLKN~~~~LPL~~~~~~~vaviG~~a~~~~~~~G~~~ 291 (627)
++++++++++|+|||||+..+|||+ +..++|+|+||.+... . |+|+
T Consensus 327 ~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 327 RALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 9999999999999999999999999 5556999999999987 5 5554
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=2e-49 Score=414.05 Aligned_cols=193 Identities=33% Similarity=0.528 Sum_probs=161.4
Q ss_pred cccee-eCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCceEEeeccccccc-CCCCCCCCcccccc
Q 006889 7 AGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYD-LDNWNGVDRYHFNA 84 (627)
Q Consensus 7 ~G~~~-~aP~~di~r~p~~gr~~e~fgeDP~l~~~~a~a~v~GlQ~~~~~~~gv~a~~KHF~g~g-~~~~~~~~r~~~~~ 84 (627)
.|+|+ |||++||.|+|+|||++|||||||+++++|+.|||+|+|+. ||++|+||||||+ .++| +...++
T Consensus 101 ~Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q~~-----gv~~~~KHFpG~~~~d~~----~~~~~~ 171 (299)
T PF00933_consen 101 LGINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQGA-----GVAATAKHFPGHGAQDSH----RDLPSV 171 (299)
T ss_dssp TT-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHHCT-----TSEEEEEEETTGGCSCTT----TTTEEE
T ss_pred hhhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccccc-----cccccccccccccccccc----ccccee
Confidence 39999 99999999999999999999999999999999999999999 8999999999973 4443 444556
Q ss_pred cCCHHHHHHhccHHHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHhhhcCCCeEEEcChhhhhhhhccccccCCh
Q 006889 85 RVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTP 164 (627)
Q Consensus 85 ~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~ 164 (627)
+++.++|+|.||+||+.+|+++++.+||+||+.+|++|+|+|+.+|+++||++|||+|+|||||++|+++...+ +.
T Consensus 172 ~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~~ 247 (299)
T PF00933_consen 172 DVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNY----SI 247 (299)
T ss_dssp E--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCT----TH
T ss_pred cCCcccccchhcccchhcccccccceeeeeccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhcc----cc
Confidence 78999999999999999995566999999999999999999999999999999999999999999999997643 37
Q ss_pred HHHHHHHHHcCCCcCChhh----HHHHHHHHHhCCCCCHHHHHHHhhhhHHH
Q 006889 165 EEAAADAIKAGLDLDCGPF----LAIHTEGAVRGGLLREEDVNLALAYTITV 212 (627)
Q Consensus 165 ~~a~~~al~AG~D~~~~~~----~~~~l~~av~~G~~~~~~id~av~Ril~~ 212 (627)
.+++++||+||+||+|.+. ..+.|.++|++|.++++|||+|++|||++
T Consensus 248 ~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 248 EEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH
T ss_pred chHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Confidence 8999999999999998642 24899999999999999999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=6.2e-41 Score=352.60 Aligned_cols=189 Identities=19% Similarity=0.216 Sum_probs=157.2
Q ss_pred ccee-eCccccccCCCCCCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCCceEEeecccccccCCCCCCCCcccccccC
Q 006889 8 GLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARV 86 (627)
Q Consensus 8 G~~~-~aP~~di~r~p~~gr~~e~fgeDP~l~~~~a~a~v~GlQ~~~~~~~gv~a~~KHF~g~g~~~~~~~~r~~~~~~~ 86 (627)
|||+ |+|++||.++++| |+.|+|||||+++++|+.|||+|||+. ||++|+|||||||.+..+. .........
T Consensus 114 Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~-----gv~~~~KHFpG~G~~~~ds-h~~~~~~~~ 186 (337)
T PRK05337 114 GIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA-----GMAATGKHFPGHGAVEADS-HVETPVDER 186 (337)
T ss_pred CCCccccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC-----CCEEEecccCCCCCCcCCC-CCCCCCCCC
Confidence 9999 9999999965555 889999999999999999999999998 8999999999999653211 111111233
Q ss_pred CHHHHHHhccHHHHHHHHcCCCceEEec---cccCCCcccccCHHHHHHHHhhhcCCCeEEEcChhhhhhhhccccccCC
Q 006889 87 SKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (627)
Q Consensus 87 ~~~~l~e~~l~pF~~ai~~g~~~~vM~s---y~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~ 163 (627)
+.++|++.||+||+.+|++| +.+|||| |+.+|+.|||.|+++|+++||+||||+|+|||||++|.++.. ..+
T Consensus 187 ~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~----~~~ 261 (337)
T PRK05337 187 PLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV----AGD 261 (337)
T ss_pred CHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh----cCC
Confidence 66799999999999999988 8999999 899999999999999999999999999999999999987532 347
Q ss_pred hHHHHHHHHHcCCCcCChh---hHHHHHHHHHhCCCCCHHHHHHHhhhhHHHHHHh
Q 006889 164 PEEAAADAIKAGLDLDCGP---FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRL 216 (627)
Q Consensus 164 ~~~a~~~al~AG~D~~~~~---~~~~~l~~av~~G~~~~~~id~av~Ril~~k~~l 216 (627)
.++++++|++|||||+|.+ .....+.+++.+ +.+.+|+++++.+.
T Consensus 262 ~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 262 YAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred HHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 7889999999999998753 344566777755 66788888887653
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=3.1e-39 Score=324.69 Aligned_cols=214 Identities=41% Similarity=0.592 Sum_probs=154.2
Q ss_pred ceeeccCCcCCCccCCCCcEEEEEccCCcccccccccc-ccCCCCcCCHHHHHHHhhce---eeeccCCccccCCccchH
Q 006889 253 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNY-AGVACGYTTPLQGISRYAKT---IHQAGCFGVACNGNQLIG 328 (627)
Q Consensus 253 iVLLKN~~~~LPL~~~~~~~vaviG~~a~~~~~~~G~~-~g~~~~~~t~~~~l~~~~~~---~y~~g~~~~~~~~~~~~~ 328 (627)
||||||++++|||++++. +|+|+|+.+......+|++ ...+....+++++|+++... .+..++. .......++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999988643 9999999999876655544 33455678899999988542 2221111 112356788
Q ss_pred HHHHHhhcCCEEEEEecCCccccccc--------CCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCcceecccccCCC
Q 006889 329 AAEVAARQADATVLVMGLDQSIEAEF--------IDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDP 400 (627)
Q Consensus 329 ~a~~~a~~aD~vIv~vg~~~~~~~Eg--------~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~~g~P~~l~~~~~~~ 400 (627)
++++.++++|++||++|. .++|| .||.++.|+..|.+||+++++.+ +|+|||+++|+||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 899999999999999982 23343 69999999999999999999865 6899999999999997764 4
Q ss_pred CccEEEEccCCcchhHHHHHHHHhCCCCC-CCCccccCcccccCCCCCccccccccCCCCCCccccCCCCcccccCcCCC
Q 006889 401 RIGAILWVGYPGQAGGAAIADVLFGRANP-GKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMS 479 (627)
Q Consensus 401 ~v~Ail~a~~~G~e~g~AlAdVL~G~~nP-GkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~~ypFG~GLS 479 (627)
+++|||++|++|+++++|+||||||++|| ||||+|| |++. +++|...... ..+++|+|....++||||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLs 224 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLS 224 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS------THCCHHHHTTSESB-TT--B-
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-----ccCcccccCCCCccCcCCCCCE
Confidence 89999999999999999999999999999 9999997 8876 7778542111 1234577777899999999999
Q ss_pred CCC
Q 006889 480 YTT 482 (627)
Q Consensus 480 YTt 482 (627)
||+
T Consensus 225 yt~ 227 (227)
T PF01915_consen 225 YTY 227 (227)
T ss_dssp TT-
T ss_pred eeC
Confidence 996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.83 E-value=4.7e-21 Score=156.71 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=59.9
Q ss_pred eEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCC-CCEEecCeEEEEEEeCCC
Q 006889 544 HTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRRIPMGEHSLHIGDLK 613 (627)
Q Consensus 544 evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss 613 (627)
||||||+++|.+. .+|.|+|+||+||+|+|||+++|+|+|+. ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999986 89999999999999999999999999999 999999999 699999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.35 E-value=0.013 Score=50.35 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=44.0
Q ss_pred eEEEEEEEEeCCCC-CcceEEEEEEeCCCCCCCcchhhcccccc-ccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeE
Q 006889 527 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 604 (627)
Q Consensus 527 ~~~v~v~VtNtG~~-~G~evvQlY~~~p~~~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 604 (627)
.++++++|+|.|.. ++.-.|++|+.... .+-..| .|+||++++|+|++.. . .+|.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~~---------~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~G~ 76 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGNS---------VSTVTIPSLAPGESETVTFTWTP-P-------------SPGS 76 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTEE---------EEEEEESEB-TTEEEEEEEEEE--S-------------S-CE
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCce---------eccEEECCcCCCcEEEEEEEEEe-C-------------CCCe
Confidence 68999999999997 56678888886532 144555 6999999999999987 3 4688
Q ss_pred EEEEEe
Q 006889 605 HSLHIG 610 (627)
Q Consensus 605 y~i~vG 610 (627)
|.|.+-
T Consensus 77 ~~i~~~ 82 (101)
T PF07705_consen 77 YTIRVV 82 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887654
No 9
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=95.38 E-value=0.11 Score=43.50 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=33.7
Q ss_pred EEEEEEEEeCCCCC------cceEEEEEEeCCCCC-------CCcchhhccccccccCCCCeEEEEEEecCCCCceEEeC
Q 006889 528 LGLHVDIKNTGDMA------GTHTLLVFAKPPAGN-------WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 594 (627)
Q Consensus 528 ~~v~v~VtNtG~~~------G~evvQlY~~~p~~~-------~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~ 594 (627)
+.+.++|+|+++.+ .---.-+.|.++.+. ++.- ...+..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 56778888887742 111223344444432 2332 22344677999999999999998 5554
Q ss_pred CCCEEecCeEEEEE
Q 006889 595 FGIRRIPMGEHSLH 608 (627)
Q Consensus 595 ~~~~~~~~G~y~i~ 608 (627)
||+|++.
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999875
No 10
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.56 E-value=0.17 Score=41.75 Aligned_cols=65 Identities=18% Similarity=0.303 Sum_probs=36.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCC-C--CCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCe
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG-N--WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMG 603 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~-~--~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 603 (627)
.++++++|+|.|..+-.. +.+=++.|.+ . ..|. ++ ..|+|||+++++|.|..-.+ .++|
T Consensus 6 ~~~~~~tv~N~g~~~~~~-v~~~l~~P~GW~~~~~~~-~~-----~~l~pG~s~~~~~~V~vp~~-----------a~~G 67 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTN-VSLSLSLPEGWTVSASPA-SV-----PSLPPGESVTVTFTVTVPAD-----------AAPG 67 (78)
T ss_dssp EEEEEEEEE--SSS-BSS--EEEEE--TTSE---EEE-EE-------B-TTSEEEEEEEEEE-TT-------------SE
T ss_pred EEEEEEEEEECCCCceee-EEEEEeCCCCccccCCcc-cc-----ccCCCCCEEEEEEEEECCCC-----------CCCc
Confidence 689999999999765322 3343455643 1 1221 11 16999999999999987211 4589
Q ss_pred EEEEEE
Q 006889 604 EHSLHI 609 (627)
Q Consensus 604 ~y~i~v 609 (627)
+|.|.+
T Consensus 68 ~y~v~~ 73 (78)
T PF10633_consen 68 TYTVTV 73 (78)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 998866
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=92.04 E-value=1.2 Score=38.40 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=44.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeEEE
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 606 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~ 606 (627)
..+.+++|+|+|....+- -++.|....... -.-+..-.|+||++.++++++.+......++..-.-..+.|.+.
T Consensus 21 ~~~~~v~l~N~s~~p~~f----~v~~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~~~ 94 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARF----RVRQPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGSFE 94 (102)
T ss_pred EEEEEEEEEECCCCCEEE----EEEeCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeEEE
Confidence 578999999999998543 333443211111 01233445999999999999993255555543322234444444
Q ss_pred E
Q 006889 607 L 607 (627)
Q Consensus 607 i 607 (627)
|
T Consensus 95 i 95 (102)
T PF14874_consen 95 I 95 (102)
T ss_pred E
Confidence 3
No 12
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=90.54 E-value=0.46 Score=40.90 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCC--C--C-CCcchhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPA--G--N-WSPNKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~--~--~-~~P~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
-+++++|+|||+|+ +|+=-...- . . .-....=.|| .-|..+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 36889999999999 888222211 1 0 1111111121 3456789999999874
No 13
>PRK13202 ureB urease subunit beta; Reviewed
Probab=89.42 E-value=0.65 Score=40.12 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=29.6
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
+++++|+|||+|+ +|+=-...--...| ...=.|+ .-|..+|||+++|++.
T Consensus 22 ~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 22 RLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred eEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 6889999999999 88832221110001 0111111 3456799999999875
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=89.33 E-value=0.67 Score=39.89 Aligned_cols=51 Identities=25% Similarity=0.218 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCC--CC--C-CCcchhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPP--AG--N-WSPNKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p--~~--~-~~P~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
=+++++|+|||+|+ +|+=-... .. . .--...=.|+ .-|..+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999999 88822221 11 0 0001111111 3456799999999874
No 15
>PRK13203 ureB urease subunit beta; Reviewed
Probab=88.54 E-value=0.79 Score=39.55 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=29.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
-+++++|+|||+|+ +|+=-...--...| ...=.|+ .-|..+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999999 88832221110000 1111111 3356789999999874
No 16
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=87.42 E-value=0.77 Score=39.47 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=25.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
-+++++|+|||+|+ +|+=-...--...| ...=.|+ +-|..+|||+++|++-
T Consensus 19 ~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 19 ERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp EEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred cEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 57899999999999 88822221110111 0111111 3356789999999874
No 17
>PRK13201 ureB urease subunit beta; Reviewed
Probab=87.12 E-value=1.1 Score=40.52 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=30.5
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
-+++++|+|||+|+ ||+=-...--...| ...=.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999999 88822221110000 1111121 3456799999999875
No 18
>PRK13205 ureB urease subunit beta; Reviewed
Probab=86.18 E-value=1.2 Score=40.96 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=30.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
-+++++|+|||+|+ ||+=-...--...| ...=.|| .-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999999 88832221110011 1111121 3456799999999985
No 19
>PRK13204 ureB urease subunit beta; Reviewed
Probab=85.64 E-value=1.3 Score=40.91 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=30.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCC--C--C-CCcchhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPA--G--N-WSPNKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~--~--~-~~P~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
-.++++|+|||+|+ ||+=-...- . . .-....=.|+ .-|..+|||+++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999999 888222211 1 0 1001111111 3456799999999875
No 20
>PRK13198 ureB urease subunit beta; Reviewed
Probab=84.93 E-value=1.5 Score=40.51 Aligned_cols=51 Identities=20% Similarity=0.089 Sum_probs=30.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCC--C--C-CCcchhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPA--G--N-WSPNKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~--~--~-~~P~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
-+++++|+|||+|+ ||+=-...- . . .-....=.|+ .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 36889999999999 888222211 1 0 1011111122 3456799999999875
No 21
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=83.05 E-value=25 Score=38.90 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=57.0
Q ss_pred HHHcCCCceEEeccccCCC-----cccccCHHHHHHHHhhhcCCCeEEEcChhhhhhhhccccccCChHHHHHHHHHcC-
Q 006889 102 CVVEGKVASVMCSYNQVNG-----KPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG- 175 (627)
Q Consensus 102 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~~a~~~al~AG- 175 (627)
.|+++ ...+|.+.+++.| ..|+.++-+++.+|+-=+.. |.-+..-+ |=..+|+..|
T Consensus 60 ~iDe~-lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~AepG----------------EFs~RAFLNgK 121 (454)
T COG0486 60 IIDEV-LVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEPG----------------EFSKRAFLNGK 121 (454)
T ss_pred Eeeee-eEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCCC----------------cchHHHHhcCC
Confidence 45566 5678999999977 46888998888888764443 23333322 2234455444
Q ss_pred CCcCChh--------hHHHHHHHHHh--CCCCCHHHHHHHhhhhHHHHHHh
Q 006889 176 LDLDCGP--------FLAIHTEGAVR--GGLLREEDVNLALAYTITVQMRL 216 (627)
Q Consensus 176 ~D~~~~~--------~~~~~l~~av~--~G~~~~~~id~av~Ril~~k~~l 216 (627)
+|+.--. ........|++ +|.++ ++|++-.++++.+....
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~v 171 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGALS-QLINELREALLELLAQV 171 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHh
Confidence 6653210 11123344444 47774 57888888888877665
No 22
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=81.54 E-value=2.3 Score=36.45 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=29.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeC--CCC--C---CCcc---hh--hccccccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKP--PAG--N---WSPN---KQ--LIGFKKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~--p~~--~---~~P~---k~--L~gF~kv~l~pGes~~V~~~ 582 (627)
-+++++|.|||+|+ +|+=-.+ ... . +|.. +. .-.=+-|..+||+.|+|++-
T Consensus 20 ~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 20 PTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred cceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 46788899999998 8872211 111 1 1110 00 11113466799999999874
No 23
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=80.71 E-value=3.7 Score=30.11 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=26.3
Q ss_pred EEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEE
Q 006889 531 HVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLD 582 (627)
Q Consensus 531 ~v~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~ 582 (627)
+++++|+|+.. .+++--.+.-. ..+ .+.|-.|+|||+.+++++
T Consensus 1 ~F~~~N~g~~~----L~I~~v~tsCgCt~~-----~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP----LVITDVQTSCGCTTA-----EYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc----EEEEEeeEccCCEEe-----eCCcceECCCCEEEEEEE
Confidence 37889999876 33322222211 222 255656999999998876
No 24
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=80.18 E-value=2.6 Score=41.01 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
-+++++|+|||+|+ +|+=-...--...| .+.=.|| .-|..+|||+++|++-
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999999 88832221110111 1111122 3356789999998874
No 25
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=79.73 E-value=5.4 Score=34.64 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=22.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEec
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIH 584 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~ 584 (627)
.|+++++|.|... .++ .+. . .+ ....|.||++++++|+-.
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~----------~-~~-~~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIP----------D-LG-ISKVLPPGETATVTFTPL 83 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEG----------G-GT-EEEEE-TT-EEEEEEEE-
T ss_pred eEEEEEEECCCCc-EEE---EEC----------C-Cc-eEEEECCCCEEEEEEcCC
Confidence 5678889998885 222 111 1 22 235699999999998543
No 26
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=79.30 E-value=8.1 Score=32.62 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=31.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCC-CCCCCcchhhccccccccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPP-AGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p-~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
.+.++++|.|+.+ +.+-|.+. +....| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~~----~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAA----VTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCc----EEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 6889999986654 44444442 221333 4678999999999999954
No 27
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=77.08 E-value=6.5 Score=35.12 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=37.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCC-C-CCCcchhhcccccc-ccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPA-G-NWSPNKQLIGFKKV-HVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~-~-~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~ 585 (627)
+.+++|+|+|+ -.-.+|+.+.... . ...+...|.=+=.. .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999999 4567888887621 1 13333345555555 489999999999 544
No 28
>PRK13986 urease subunit alpha; Provisional
Probab=76.61 E-value=3.7 Score=40.39 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006889 528 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 528 ~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
=+++++|+|||+|+ +|+=-...--...| ...=.|| .-|..+||++++|++-
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999999 88822221100000 0111111 3456799999999875
No 29
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=76.33 E-value=5 Score=36.26 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=31.7
Q ss_pred EEEEEEEeCCCCC----cceEEEEEEeCCCCC---------------CCcc--hhhccccccccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMA----GTHTLLVFAKPPAGN---------------WSPN--KQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~----G~evvQlY~~~p~~~---------------~~P~--k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
+|+|+.+|+|+.+ |--.|- ..+... --|. .+..+..|+ |.|||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkl-iggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKV-IGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEccc-cCCCceEEEEEECCC
Confidence 5888999999876 554442 222110 0121 233333322 699999999999864
No 30
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=75.50 E-value=3.9 Score=40.52 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=32.1
Q ss_pred EEEeCCCCCcceEEEEEEeCCCCC---CCc--------chhhccccccccCCCCeEEEEEEecCCCCceEEeCCCC
Q 006889 533 DIKNTGDMAGTHTLLVFAKPPAGN---WSP--------NKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGI 597 (627)
Q Consensus 533 ~VtNtG~~~G~evvQlY~~~p~~~---~~P--------~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~ 597 (627)
++-|-|. |.-+++||-+.+... ..| .+.+....++.|.||||- +|.+.-.-++|-+.|.
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESi----TL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESI----TLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EE----EE-TTEEEEEEE-TTS
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeE----eeCCCCeeeEEecCCC
Confidence 4567665 788899999887543 233 356888999999999985 6677223355554443
No 31
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=74.16 E-value=6.5 Score=41.84 Aligned_cols=53 Identities=15% Similarity=0.340 Sum_probs=29.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEE--E----EeCCCC---C---CCcchhhccc-----c-ccccCCCCeEEEEEEec
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLV--F----AKPPAG---N---WSPNKQLIGF-----K-KVHVTAGALQSVRLDIH 584 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQl--Y----~~~p~~---~---~~P~k~L~gF-----~-kv~l~pGes~~V~~~l~ 584 (627)
+++++++|||+|+.+ |+| | +++.+. . ..| .+|.+- . .--|+||||++++++..
T Consensus 264 ~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P-~~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYP-DELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp EEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S----TTTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred EEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCc-hhhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 799999999998765 555 1 122111 1 223 355543 1 12489999999999984
No 32
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=72.84 E-value=13 Score=33.51 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=37.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCC------------------CCcchhhccccc-cccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN------------------WSPNKQLIGFKK-VHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~------------------~~P~k~L~gF~k-v~l~pGes~~V~~~l~~ 585 (627)
..+++++|+|+++..-+ +++++..-.+. ..+..+|....+ |.|+|+|+++|+|+|..
T Consensus 28 ~~~l~v~i~N~s~~~~t--v~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEIT--VKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred EEEEEEEEEeCCCCCEE--EEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 56788888898775433 34443331110 124555555554 57999999999999987
No 33
>COG1470 Predicted membrane protein [Function unknown]
Probab=71.83 E-value=4.7 Score=44.13 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=51.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEe-CCCC--CCCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCe
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAK-PPAG--NWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMG 603 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~-~p~~--~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 603 (627)
++.++|++.|.|.-+=+ .-|=++ .|.. ..--.-+++ -.||.|.|||+++|++++.+. . -.+||
T Consensus 285 t~sf~V~IeN~g~~~d~--y~Le~~g~pe~w~~~Fteg~~~-vt~vkL~~gE~kdvtleV~ps-~----------na~pG 350 (513)
T COG1470 285 TASFTVSIENRGKQDDE--YALELSGLPEGWTAEFTEGELR-VTSVKLKPGEEKDVTLEVYPS-L----------NATPG 350 (513)
T ss_pred ceEEEEEEccCCCCCce--eEEEeccCCCCcceEEeeCceE-EEEEEecCCCceEEEEEEecC-C----------CCCCC
Confidence 67899999999987622 122222 3332 100011111 367889999999999999982 1 24689
Q ss_pred EEEEEEeCCCc-----eEEEEEEEc
Q 006889 604 EHSLHIGDLKH-----SISLQANLE 623 (627)
Q Consensus 604 ~y~i~vG~ss~-----~~~~~~~~~ 623 (627)
+|.+.|-.+|. .+.+.+++-
T Consensus 351 ~Ynv~I~A~s~s~v~~e~~lki~~~ 375 (513)
T COG1470 351 TYNVTITASSSSGVTRELPLKIKNT 375 (513)
T ss_pred ceeEEEEEeccccceeeeeEEEEec
Confidence 99998876553 444544443
No 34
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=67.08 E-value=9.9 Score=33.13 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=33.8
Q ss_pred eEEEEEEEEeCCCCCcce-EEEEEEeCCCCCCCcc-hhhccccccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTH-TLLVFAKPPAGNWSPN-KQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~e-vvQlY~~~p~~~~~P~-k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
.++++++++|..+..-+. -+.+-+..-...+.+. .-.+-...+.|+|||++++++++.+
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 599999999999988444 1222111111222222 2233344567999999999999988
No 35
>COG1470 Predicted membrane protein [Function unknown]
Probab=65.75 E-value=22 Score=39.17 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=52.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcccccc-ccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeEE
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 605 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y 605 (627)
..++.+.|.|+|+.+=.. +-|=+..|.+= ..+.-.+ ++ .|+|||+++|.++++.- .+ -.+|+|
T Consensus 398 e~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW---ei~Vd~~-~I~sL~pge~~tV~ltI~vP--------~~---a~aGdY 461 (513)
T COG1470 398 EKTIRISIENSGNAPLTD-IKLTVNGPQGW---EIEVDES-TIPSLEPGESKTVSLTITVP--------ED---AGAGDY 461 (513)
T ss_pred cceEEEEEEecCCCccce-eeEEecCCccc---eEEECcc-cccccCCCCcceEEEEEEcC--------CC---CCCCcE
Confidence 468889999999776444 34556666541 1233344 45 58999999999999872 11 357999
Q ss_pred EEEEeCCCc----eEEEEEEEc
Q 006889 606 SLHIGDLKH----SISLQANLE 623 (627)
Q Consensus 606 ~i~vG~ss~----~~~~~~~~~ 623 (627)
+|.+-..|. +-+++++|+
T Consensus 462 ~i~i~~ksDq~s~e~tlrV~V~ 483 (513)
T COG1470 462 RITITAKSDQASSEDTLRVVVG 483 (513)
T ss_pred EEEEEEeeccccccceEEEEEe
Confidence 998876443 334444443
No 36
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=64.90 E-value=19 Score=33.51 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=41.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccc-cCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH-VTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~-l~pGes~~V~~~l~~ 585 (627)
-+.|.++.+|+++. ++-=+-+..+. -..-.++++|.++. |+||++.++.+-++-
T Consensus 86 mvsIql~ftN~s~~---~i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 86 MVSIQLTFTNNSDE---PIKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred cEEEEEEEEecCCC---eecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 47899999999985 44445555543 12345899999996 899999999998876
No 37
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=60.11 E-value=9.1 Score=40.66 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=34.6
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||++|+..|... .+|.+|.++ -... .++++++.+.+++..|+++. +||+|+
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADL--LSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 45689999999998643 456666543 2222 34555666554435555555 599987
No 38
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=59.14 E-value=27 Score=31.65 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=38.8
Q ss_pred eEEEEEEEEeCCCC----CcceEEEEEEeCCCCC---CCcchhhccccccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDM----AGTHTLLVFAKPPAGN---WSPNKQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~----~G~evvQlY~~~p~~~---~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
.-.+.+++||+|+. .|.=-|++. +.... ....++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 35789999999996 666667766 22222 12222333456778999999999998876
No 39
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=58.06 E-value=64 Score=26.69 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=44.0
Q ss_pred eEEEEEEEEeC-CC-CCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeE
Q 006889 527 SLGLHVDIKNT-GD-MAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 604 (627)
Q Consensus 527 ~~~v~v~VtNt-G~-~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 604 (627)
.+++++.+-|. .. ..|.. +++|+..... +. .+.....-.|.||++..|+|.+.. +.+ +.+..|.+.+..|
T Consensus 5 ~f~A~i~il~~~~~i~~Gy~-~~l~~~t~~~---~~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g- 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPGYQ-ATVHIGSIRQ---TA-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG- 76 (87)
T ss_pred EEEEEEEEEcCCCcccCCCE-eEEEEcCCEE---EE-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-
Confidence 46666666662 22 34443 5566655432 11 111111145899999999999643 456 4455567777777
Q ss_pred EEEEEe
Q 006889 605 HSLHIG 610 (627)
Q Consensus 605 y~i~vG 610 (627)
.++.+|
T Consensus 77 ~tva~G 82 (87)
T cd03708 77 RTKGVG 82 (87)
T ss_pred CcEEEE
Confidence 566665
No 40
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=57.71 E-value=29 Score=32.25 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=36.8
Q ss_pred eEEEEEEEEeCCCCCcceE-EEE--EEeC-CCCC--CCcchhhcccccc------ccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHT-LLV--FAKP-PAGN--WSPNKQLIGFKKV------HVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~ev-vQl--Y~~~-p~~~--~~P~k~L~gF~kv------~l~pGes~~V~~~l~~ 585 (627)
.+.|..+|||+|+++=++| +++ +-.. .... ..=..++.+|.+. .|+|||++.-++.++.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 6899999999999865443 222 2211 1111 2224455556322 2999999999888764
No 41
>COG1160 Predicted GTPases [General function prediction only]
Probab=57.00 E-value=29 Score=38.29 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEec
Q 006889 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (627)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~~ 387 (627)
+++..++++||++|+++... + .+.+...++.+.|. ..+||+|+|+|-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~-------Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----E-------GITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----C-------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 45677889999999988421 2 24555566666665 467899999884
No 42
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=52.41 E-value=12 Score=39.52 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||+||+..|... .+|.+|.++ -... .++++++.+..++..++++. +||+|+
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~a~~~~ivivv-tNPvDv 115 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEYAKPTVKVLVI-GNPVNT 115 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCchHH
Confidence 35689999999988643 345566442 2222 23445555544332444434 599987
No 43
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=49.88 E-value=52 Score=36.91 Aligned_cols=59 Identities=29% Similarity=0.398 Sum_probs=45.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCCCCEEecCeEEE
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 606 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~ 606 (627)
.+++.++|+-+|++. |.+||-+.. ++.+++.+..|.-+. +.|++.|.. +++|.|.
T Consensus 328 ~~~i~ftv~a~g~~~----vta~V~d~~------g~~~~~~~~~v~d~s-~~vtL~Ls~--------------~~AG~y~ 382 (478)
T PRK13211 328 AATLDFTVTATGDMN----VEATVYNHD------GEALGSKSQTVNDGS-QSVSLDLSK--------------LKAGHHM 382 (478)
T ss_pred cEEEEEEEEeccceE----EEEEEEcCC------CCeeeeeeEEecCCc-eeEEEeccc--------------CCCceEE
Confidence 588999999888664 777887654 678888888887755 888888876 5677777
Q ss_pred EEEe
Q 006889 607 LHIG 610 (627)
Q Consensus 607 i~vG 610 (627)
|.|-
T Consensus 383 Lvv~ 386 (478)
T PRK13211 383 LVVK 386 (478)
T ss_pred EEEE
Confidence 7654
No 44
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=49.14 E-value=40 Score=36.01 Aligned_cols=54 Identities=20% Similarity=0.439 Sum_probs=32.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEE--E----EeCCCC----C---CCcchhhc--ccc---ccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLV--F----AKPPAG----N---WSPNKQLI--GFK---KVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQl--Y----~~~p~~----~---~~P~k~L~--gF~---kv~l~pGes~~V~~~l~~ 585 (627)
+++++++|||.|+-+ |.| | +++.+. . ..| ++|. |-. ..-|+||||++|+++..-
T Consensus 283 ~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP-~~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 283 ALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYP-RELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred EEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCCh-HHHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 689999999998754 333 1 111111 1 233 3332 221 224899999999998764
No 45
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=48.00 E-value=50 Score=25.80 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHHhc-CCCEEEEEe
Q 006889 363 PGRQQELVSRVAKAS-RGPVVLVLM 386 (627)
Q Consensus 363 ~~~q~~Li~~v~~~~-~kpvVVVl~ 386 (627)
..+|.+|.+.+.... ++|+++|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 468999999998776 789998875
No 46
>PRK05442 malate dehydrogenase; Provisional
Probab=47.64 E-value=20 Score=38.14 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||+||++.|... .+|.+|.++ -.... ++.+++.+..++..++++. +||+|+
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 135 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVLVV-GNPANT 135 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHH
Confidence 45679999999888543 345566442 22223 3444555433234454444 599987
No 47
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=47.27 E-value=19 Score=38.21 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=33.3
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||+||+..|... .+|.+|.++ -... +++.+++.+..++..++++. +||+|+
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 56679999999988543 345565442 2222 34455555543344555544 599986
No 48
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=47.26 E-value=24 Score=27.48 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.1
Q ss_pred ecCeEEEEEEe
Q 006889 600 IPMGEHSLHIG 610 (627)
Q Consensus 600 ~~~G~y~i~vG 610 (627)
++||+|+|.|=
T Consensus 36 L~~G~Y~l~V~ 46 (66)
T PF07495_consen 36 LPPGKYTLEVR 46 (66)
T ss_dssp --SEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 78999999886
No 49
>PLN02303 urease
Probab=47.18 E-value=22 Score=42.17 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=30.5
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCc-----chhhccc-------cccccCCCCeEEEEEE
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NKQLIGF-------KKVHVTAGALQSVRLD 582 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P-----~k~L~gF-------~kv~l~pGes~~V~~~ 582 (627)
+++++|+|||+|+ ||+=-.+.--...| ...=.|| .-|..+|||+++|++.
T Consensus 151 ~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 151 AVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred eEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 6889999999999 88832221110011 1111122 3466799999999985
No 50
>PLN00135 malate dehydrogenase
Probab=46.96 E-value=20 Score=37.89 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||+||+..|... .+|.+|.++ -... .++++++.+..++..++++. +||+|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dl--l~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDV--MSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHH
Confidence 45679999999998643 345555432 1222 34455665532344555544 599987
No 51
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=46.62 E-value=97 Score=28.83 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=36.0
Q ss_pred ccccCCCCCceEEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcc-hhhccccccccCCCCeEEEEEEecC
Q 006889 517 VAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPN-KQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 517 ~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlY~~~p~~~-~~P~-k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
++...|++...+.+-|+|+ .....|++|...-... ..|- -.-+.-=...|.|||+..|-+.++.
T Consensus 59 VsN~lwEn~~~~~IcV~I~-----s~~~~i~fy~~~~~~~~~~~~sd~a~~~i~ftv~~ge~v~VGm~~~~ 124 (146)
T PF06510_consen 59 VSNHLWENGADVPICVTIS-----SSSDSIEFYTGDYDSYITGPGSDSARQSICFTVEPGESVKVGMIFDS 124 (146)
T ss_pred eecccccccCCceEEEEEe-----cCCCcEEEEecCCCccccCCccccccceEEEEecCCCeeEEEEEEec
Confidence 3334455311366777777 2356799998543322 1121 0111111245899999999999987
No 52
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.71 E-value=21 Score=37.91 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=33.0
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||++|++.|... .+|.+|.++ -.... ++.+++.+.+++..++++. +||+|+
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNT 133 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHH
Confidence 45689999999988643 345566443 22233 3444555443224554444 599987
No 53
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=43.04 E-value=45 Score=24.57 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCCHHHHHHHhhhhHHHHHHhC
Q 006889 187 HTEGAVRGGLLREEDVNLALAYTITVQMRLG 217 (627)
Q Consensus 187 ~l~~av~~G~~~~~~id~av~Ril~~k~~lG 217 (627)
..+..++...-+.+.|+..|..+|.+|..+|
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 4566777788899999999999999999988
No 54
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.89 E-value=1.1e+02 Score=29.54 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=49.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEE-eCCCCC-----CCcchhhccccccccCCCCeEEEEEEecCCCCceEEeCCCC---
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFA-KPPAGN-----WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGI--- 597 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~-~~p~~~-----~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~~~~--- 597 (627)
.++|+++|.|.|+-+-.+| +|.= ++|... +.+... |+ .|+||++.+-++.|.+ +....++-...
T Consensus 39 ~v~V~~~iyN~G~~~A~dV-~l~D~~fp~~~F~lvsG~~s~~---~~--~i~pg~~vsh~~vv~p-~~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDV-KLTDDSFPPEDFELVSGSLSAS---WE--RIPPGENVSHSYVVRP-KKSGYFNFTPAVVT 111 (181)
T ss_pred EEEEEEEEEECCCCeEEEE-EEECCCCCccccEeccCceEEE---EE--EECCCCeEEEEEEEee-eeeEEEEccCEEEE
Confidence 6999999999999876655 3433 233221 222211 22 4999999999999998 66777665443
Q ss_pred EEecCeEEEEEEeCCC
Q 006889 598 RRIPMGEHSLHIGDLK 613 (627)
Q Consensus 598 ~~~~~G~y~i~vG~ss 613 (627)
+..+.|.=...++.|+
T Consensus 112 Y~~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSS 127 (181)
T ss_pred EECCCCCceeEEEEec
Confidence 3344444444455443
No 55
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.21 E-value=25 Score=37.37 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=31.8
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.+|+||++.|... .++.+|..+ -... .++.+.+.+..++..++++. +||+|+
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l--~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDL--LKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 45679999999988643 234455332 2222 23445555543334555555 499976
No 56
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.83 E-value=30 Score=36.52 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHH----HHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~L----i~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||++|++.|..+ .+|.+|..+.|-....++ ++++.+.++ ..++++. .||+|+
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~ivv-sNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVIILI-TNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEe-cCcHHH
Confidence 45689999999988643 234443112333333334 445555443 4554444 599987
No 57
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=40.78 E-value=9.7 Score=35.21 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=30.5
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEecCcceec
Q 006889 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 333 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~----Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
..+.||++|++.|... .+|.+|.++ -....+ +.+++.+.+++.+ +++. .+|+|+
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p~~~-vivv-tNPvd~ 123 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAPDAI-VIVV-TNPVDV 123 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHSTTSE-EEE--SSSHHH
T ss_pred ccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCCccE-EEEe-CCcHHH
Confidence 4579999999887543 455555433 233333 3445555454434 3333 589986
No 58
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=40.43 E-value=82 Score=29.03 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=14.1
Q ss_pred ccCCCCeEEEEEEecC
Q 006889 570 HVTAGALQSVRLDIHV 585 (627)
Q Consensus 570 ~l~pGes~~V~~~l~~ 585 (627)
.|+|||+++++|+.+.
T Consensus 95 ~I~pGet~TitF~adK 110 (135)
T TIGR03096 95 VIKAGETKTISFKADK 110 (135)
T ss_pred EECCCCeEEEEEECCC
Confidence 4899999999999876
No 59
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.70 E-value=80 Score=26.91 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEE
Q 006889 330 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 384 (627)
Q Consensus 330 a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVV 384 (627)
..+..+++|+||++++. ....-...+++.|+..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~---------------vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDY---------------VSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCC---------------cChHHHHHHHHHHHHcCCcEEEE
Confidence 34567899999998853 34556778889998888987754
No 60
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=38.91 E-value=1e+02 Score=31.00 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=32.9
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC------CCcchhhccccccccCCCCeEEEEEEec
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGN------WSPNKQLIGFKKVHVTAGALQSVRLDIH 584 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~------~~P~k~L~gF~kv~l~pGes~~V~~~l~ 584 (627)
.++++|+|+|+. .-.+|..+...... ..|. -..|+||+++.|++-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPP-------l~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPP-------VARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCC-------eEEECCCCceEEEEEEC
Confidence 478888999976 47889988754321 1222 13589999999998643
No 61
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=38.76 E-value=22 Score=38.74 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHH----HHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELV----SRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li----~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||++|++.|... .+|.+|.++ -....+++ +++.+..++..+++ +.+||+|+
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~ivi-VVsNPvDv 175 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADL--LDINGQIFADQGKALNAVASKNCKVL-VVGNPCNT 175 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEE-EcCCcHHH
Confidence 45689999999888543 345555432 22233333 44444233344444 44699987
No 62
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=38.59 E-value=30 Score=36.82 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.+|+||+..|... .++.+|.++ -.... ++.+++.+..++..|+++. +||+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 45679999999888543 234444332 22223 3445555543344665555 599987
No 63
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=37.87 E-value=33 Score=36.28 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=34.5
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCC--hhHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~--~~q~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||+||++.|..+ .+|-+|.+|--. .-..++.+++.+.+. ..++++. .||+|+
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVv-tNPvD~ 123 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVV-TNPVDI 123 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEe-cCcHHH
Confidence 45679999999998654 555566543111 112455566666544 4554444 599987
No 64
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=37.30 E-value=23 Score=30.08 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=17.1
Q ss_pred CcchhhccccccccCCCCeEEEEEEecC
Q 006889 558 SPNKQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 558 ~P~k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
.|.--|+ .++.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~--~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQ--VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEE--EEEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEE--EEEEECCCCEEEEEEEEEE
Confidence 4555555 3678999999999998754
No 65
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=37.23 E-value=33 Score=38.56 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=34.7
Q ss_pred HHHhhhcCCCeEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCC
Q 006889 132 NTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC 180 (627)
Q Consensus 132 ~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~ 180 (627)
+=|++=+||+|.|+||.++.+.+.-. ....++++.+.---.-|.|+.|
T Consensus 73 gGlh~f~~w~g~ilTDSGgfQv~s~g-~~~ltpe~~i~~Q~~iGsDI~~ 120 (487)
T PRK13533 73 KGLHKLLGFDGPIMTDSGSYQLLVYG-DVEVTNEEILEFQRKIGSDIGV 120 (487)
T ss_pred CCHHHHhCCCCCeEeccCCcEEEEcC-CccCCHHHHHHHHHHhCCCEEe
Confidence 34677799999999999987755432 2345777765555567999987
No 66
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=35.21 E-value=75 Score=28.85 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.3
Q ss_pred HHHHHHhhcCCEEEEEec
Q 006889 328 GAAEVAARQADATVLVMG 345 (627)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg 345 (627)
.++...++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999998874
No 67
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=34.36 E-value=1e+02 Score=34.79 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=37.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhc-cccccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-GFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~-gF~kv~l~pGes~~V~~~l~~ 585 (627)
+-+++++|+|+|...-+-+.-.|.. |..-..|..+.. -+-.-.|.|||+..|+|.+..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 4589999999999876666666543 111011111111 122234899999999999987
No 68
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=33.99 E-value=34 Score=38.04 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||+||+..|... ++|.+|.++ -.... ++.+++.+..++..++++ .+||+|+
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dL--l~~N~~I~k~i~~~I~~~a~p~~ivIV-VsNPvDv 231 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADL--LDINGQIFAEQGKALNEVASRNVKVIV-VGNPCNT 231 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEE-cCCcHHH
Confidence 45679999999887543 456666543 22222 334455441233455444 4699987
No 69
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=33.99 E-value=48 Score=35.03 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||++|++.|..+ .+|.+|.++ -.... +..+++.+.++ ..++++. .||+|.
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~~p-~~iiivv-sNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAESCP-KAMILVI-TNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHhCC-CeEEEEe-cCchhh
Confidence 45689999999998643 345566543 22222 34445555443 4554444 599983
No 70
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=33.36 E-value=34 Score=30.02 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=30.4
Q ss_pred eEEEEEEEEeCCCCCcceEEEEE-----EeCCCCC---CCcch---hhccc--cccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVF-----AKPPAGN---WSPNK---QLIGF--KKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY-----~~~p~~~---~~P~k---~L~gF--~kv~l~pGes~~V~~~l~~ 585 (627)
..+.+++|+|.|+.+=.--+... ..+.... ..|.. ....| .++.|+||++++|+++++.
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 46889999999997543222222 1111111 11110 02333 4567899999999999998
No 71
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.18 E-value=1.4e+02 Score=33.03 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=33.8
Q ss_pred cchHHHHHHhhc--CCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCcceecc
Q 006889 325 QLIGAAEVAARQ--ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (627)
Q Consensus 325 ~~~~~a~~~a~~--aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~~g~P~~l~ 394 (627)
..+.+|...+.. .|++|++=|.- ...+|. +=++.++++++++ ++.|||.- .|.=.|..
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGGG--------S~eDL~-~Fn~e~v~~ai~~-~~~Pvis~--IGHE~D~t 238 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGGG--------SLEDLW-AFNDEAVARAIAA-SRIPVISA--VGHETDFT 238 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCC--------CHHHhh-ccCcHHHHHHHHc-CCCCEEEe--ccCCCCcc
Confidence 344555555555 48888865532 222221 2256789999986 67887643 36666554
No 72
>PRK05086 malate dehydrogenase; Provisional
Probab=32.91 E-value=38 Score=35.81 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~---~q~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.+|+||++.|... .++.+|.++ |.. --.++++++.+.+.+ .+++ +..||.|.
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~~~-~ivi-vvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTCPK-ACIG-IITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhCCC-eEEE-EccCchHH
Confidence 44578999999998643 233344332 111 234566667665433 4444 34599964
No 73
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=32.39 E-value=96 Score=31.74 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=34.7
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcch----hhcccccc-ccCCCCeEEEEEEec
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK----QLIGFKKV-HVTAGALQSVRLDIH 584 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k----~L~gF~kv-~l~pGes~~V~~~l~ 584 (627)
.++++|+|+|+. .-.||..+........|.+ .+.-.==+ .|+||+.+.|+|-..
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 478888999986 5899999865332222221 12222223 489999999997654
No 74
>PLN02602 lactate dehydrogenase
Probab=32.32 E-value=39 Score=36.33 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=32.0
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCcceec
Q 006889 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 333 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~----~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
..+.||+||++.|..+ .+|.+|.++ -.... ++++++.+.++ +.++++. .||+++
T Consensus 102 ~~~daDiVVitAG~~~---k~g~tR~dl--l~~N~~I~~~i~~~I~~~~p-~~ivivv-tNPvdv 159 (350)
T PLN02602 102 VTAGSDLCIVTAGARQ---IPGESRLNL--LQRNVALFRKIIPELAKYSP-DTILLIV-SNPVDV 159 (350)
T ss_pred HhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCchHH
Confidence 4689999999988643 345566433 22222 34455555443 4555544 499977
No 75
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=32.12 E-value=39 Score=35.40 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=33.1
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCCh--hHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~--~q~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||++|++.|... .+|.+|.++-+-. --.++.+++.+.+ ++.+++ +.++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi-v~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL-VVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-EccChHHH
Confidence 46789999999998643 3555664432211 1234455555544 345544 44699987
No 76
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=31.56 E-value=1e+02 Score=31.33 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchh---hcccccc-ccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQ---LIGFKKV-HVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~---L~gF~kv-~l~pGes~~V~~~l~~ 585 (627)
.++++|+|+|+. .-.||..+........|.+. +.-.=-+ .|+||+.+.|+|-...
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~ 100 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTA 100 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCC
Confidence 578889999987 58999999643322222211 1111112 4899999999987543
No 77
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.36 E-value=45 Score=35.25 Aligned_cols=55 Identities=25% Similarity=0.396 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||++|++.|..+ .+|.+|.++ -... .+.++++.+.++ ..++++. .||+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p-~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACP-KALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEEEc-cCchhh
Confidence 45689999999998643 345455432 2222 234455555443 4554444 599976
No 78
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=30.91 E-value=1.1e+02 Score=30.05 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=32.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccc----------cccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----------VHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~k----------v~l~pGes~~V~~~l~~ 585 (627)
..++++.|+=++. ++.=+|+|+--.|.+..+++.. |..| ..|.|||..+|+|+|.+
T Consensus 97 ~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 97 PPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 3566666664444 4477788877777764333222 3333 35899999999999987
No 79
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=30.08 E-value=1.8e+02 Score=29.36 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=33.6
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCC-Ccchhhccccc----cccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNW-SPNKQLIGFKK----VHVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~-~P~k~L~gF~k----v~l~pGes~~V~~~l~~ 585 (627)
.++++|+|+++. ..-.||..+.+..... .| |-= ..|+||+.++++|-...
T Consensus 44 ~~sv~i~N~~~~-~p~LvQsWv~~~~~~~~~p------FivtPPlfrl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSAS-NVFLIQSWVANADGSRSTD------FIITPPLFVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCCC-ccEEEEEEEecCCCCccCC------EEEcCCeEEECCCCceEEEEEECC
Confidence 578999999852 2356999997654321 11 211 24899999999987654
No 80
>PRK13555 azoreductase; Provisional
Probab=30.02 E-value=1.2e+02 Score=29.97 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=26.1
Q ss_pred hHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHH
Q 006889 327 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 375 (627)
Q Consensus 327 ~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~ 375 (627)
..+..+..+.||.+|++.=.. ++.+|..-+..|+.+..
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~~-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPLW-----------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCcc-----------cccchHHHHHHHHHHhc
Confidence 345567788999999875221 45677777777777764
No 81
>PRK13556 azoreductase; Provisional
Probab=29.96 E-value=1.3e+02 Score=29.43 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=26.7
Q ss_pred HHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHH
Q 006889 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK 375 (627)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~ 375 (627)
++..+..+.||.+|++.=.. ++..|..-+.+|+.+..
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-----------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-----------ccCCcHHHHHHHHHHhc
Confidence 45557788999999875221 45678877888888874
No 82
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.34 E-value=2e+02 Score=31.91 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=32.6
Q ss_pred chHHHHHHhhc---CCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCcceecc
Q 006889 326 LIGAAEVAARQ---ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (627)
Q Consensus 326 ~~~~a~~~a~~---aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~~g~P~~l~ 394 (627)
.+.++++.+.. .|++||+=|.- ...+|. +=++..+++++++ ++.|||.- .|.=.|.+
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGGG--------s~eDL~-~Fn~e~~~rai~~-~~~Pvis~--iGHe~D~t 233 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGGG--------SLEDLW-SFNDEKVARAIFL-SKIPIISA--VGHETDFT 233 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCCC--------CHHHhh-hcCcHHHHHHHHc-CCCCEEEe--cCcCCCcc
Confidence 34445544443 68888875532 122221 2256778899985 67887643 36666654
No 83
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=29.24 E-value=1.2e+02 Score=28.32 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.2
Q ss_pred hhhccccccccCCCCeEEEEEEecC
Q 006889 561 KQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 561 k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
..|.+-.++.|.|||+++++++++.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCC
Confidence 4567777888999999999999986
No 84
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=29.22 E-value=6.4e+02 Score=25.82 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=10.4
Q ss_pred hhcCCCeEEEcChhhhh
Q 006889 136 GQWRLDGYIVSDCDSVG 152 (627)
Q Consensus 136 ~e~gf~G~v~SD~~~~~ 152 (627)
++.||+.+.++|+..|.
T Consensus 29 e~aG~d~i~vGds~~~~ 45 (254)
T cd06557 29 DEAGVDVILVGDSLGMV 45 (254)
T ss_pred HHcCCCEEEECHHHHHH
Confidence 45566666666665553
No 85
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=28.32 E-value=2.1e+02 Score=26.25 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=38.6
Q ss_pred eEEEEEEEEeCCCCCcc-eEEEEEEeCCCCC------CCcchhhccc--cccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGT-HTLLVFAKPPAGN------WSPNKQLIGF--KKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~-evvQlY~~~p~~~------~~P~k~L~gF--~kv~l~pGes~~V~~~l~~ 585 (627)
.+.++.+++|+++.+=. =.+++-+.+..+. -.|..-|..- .+..|+||++.++++.+..
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 68999999999997521 2344555554442 2453333332 2446999999999998874
No 86
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=28.12 E-value=2e+02 Score=28.89 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=34.0
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccc-cccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK-VHVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~k-v~l~pGes~~V~~~l~~ 585 (627)
.++++|+|+|+. .-.||..+........+...+.--== ..|+||++++|+|....
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~ 91 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSG 91 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECC
Confidence 578999999986 48899999764321101000000001 24899999999987653
No 87
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=28.04 E-value=45 Score=33.33 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=40.6
Q ss_pred HHHHHHcCCCceEEeccccCCCcc-cccCHHHHHHHHhhhcCCCeEEEcChhhh
Q 006889 99 FKACVVEGKVASVMCSYNQVNGKP-TCADPDILKNTIHGQWRLDGYIVSDCDSV 151 (627)
Q Consensus 99 F~~ai~~g~~~~vM~sy~~vng~p-a~~s~~ll~~~LR~e~gf~G~v~SD~~~~ 151 (627)
|+.|++.. +.+||++||.-.|.| -+.....+|.-|.+-.++-|+.+=|-.-+
T Consensus 158 ~k~Al~~n-AaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 158 FKEALKYN-AAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred HHHHHHhc-chhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 68889876 789999999998865 33344468889999999999888776543
No 88
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=27.92 E-value=79 Score=23.93 Aligned_cols=21 Identities=19% Similarity=0.563 Sum_probs=16.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEE
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLV 548 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQl 548 (627)
.++.+++|+|+|...... |++
T Consensus 13 ~v~Yti~v~N~g~~~a~~-v~v 33 (53)
T TIGR01451 13 TITYTITVTNNGNVPATN-VVV 33 (53)
T ss_pred EEEEEEEEEECCCCceEe-EEE
Confidence 799999999999977543 444
No 89
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=27.85 E-value=49 Score=34.69 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 332 ~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
+..+.||++|++.|... .+|.+|.++ -... .++.+++.+.+ ...+++ +.+||.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~-p~~~vi-vvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSG-FDGIFL-VATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhC-CCeEEE-EeCCHHHH
Confidence 45679999999988643 345566432 2222 23445555543 345544 44699876
No 90
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=27.83 E-value=71 Score=27.99 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=27.7
Q ss_pred eEEEEEEEEeCCCCCcce-EEEEEEeCCCCC-CCcch----hhccccccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTH-TLLVFAKPPAGN-WSPNK----QLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~e-vvQlY~~~p~~~-~~P~k----~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
-+.|+|+|+|+|+-+-.- ..+..+.+.... -.|.. ....+--..|+||++.+..+-+..
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 589999999998865321 113344444432 11211 111144457999999876655443
No 91
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=27.75 E-value=51 Score=34.63 Aligned_cols=53 Identities=23% Similarity=0.409 Sum_probs=30.2
Q ss_pred hhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHH----HHHHHhcCCCEEEEEecCcceec
Q 006889 334 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELV----SRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 334 a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li----~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
.+.||++|+++|... .+|.+|.+ |-....+++ +++.+.++ ..++++. .||+++
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~--l~~~N~~iv~~i~~~I~~~~p-~~~iIv~-tNP~di 123 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSRED--LLSMNAGIVREVTGRIMEHSP-NPIIVVV-SNPLDA 123 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHH--HHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHH
Confidence 578999999998653 23334432 223333444 44554443 3444444 599987
No 92
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=27.15 E-value=1.9e+02 Score=29.28 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=35.2
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccc----cccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----VHVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~k----v~l~pGes~~V~~~l~~ 585 (627)
.++++|+|+++.. -.||..+.+.....++ -|-= ..|+||+.++++|....
T Consensus 45 ~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~-----pFivtPPlfRlep~~~~~lRI~~~~ 98 (237)
T PRK15224 45 GATLSVSNPQNYP--ILVQSSVKAADKSSPA-----PFLVMPPLFRLEANQQSQLRIVRTG 98 (237)
T ss_pred EEEEEEEcCCCCc--EEEEEEEeCCCCCccC-----CEEECCCeEEECCCCceEEEEEECC
Confidence 5788889999764 9999999865432111 1221 24899999999998764
No 93
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=27.14 E-value=1.5e+02 Score=29.76 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=34.2
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhcccccc-ccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV-HVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~kv-~l~pGes~~V~~~l~~ 585 (627)
.++++|+|+|+. .-.||..+.+.... ..+...+.-.=-+ .|+||+++.++|-...
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~ 95 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTG 95 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECC
Confidence 578899999986 68999998753211 0110011111112 4899999999976543
No 94
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=27.05 E-value=73 Score=25.67 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.8
Q ss_pred eEEEEEEEEeCCCCCcce
Q 006889 527 SLGLHVDIKNTGDMAGTH 544 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~e 544 (627)
.++.+++|+|+|+..-..
T Consensus 42 ~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATN 59 (76)
T ss_pred EEEEEEEEEECCCCeeEe
Confidence 799999999999998555
No 95
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=26.77 E-value=65 Score=33.92 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=30.2
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 333 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q----~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
..+.||++|+++|... .++.+|.++ -... .+.++++.+.++ ..++++. ++|+++
T Consensus 69 ~l~~aDiViitag~p~---~~~~~r~dl--~~~n~~i~~~~~~~i~~~~~-~~~viv~-~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPR---KEGMSRLDL--AKKNAKIVKKYAKQIAEFAP-DTKILVV-TNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHHCC-CeEEEEe-CCchHH
Confidence 4789999999998653 344454332 1111 233444444443 3444444 589876
No 96
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=26.64 E-value=2.3e+02 Score=26.96 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=23.9
Q ss_pred hcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 335 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 335 ~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
..+|+++|.+|. +.|+.++.+..+..+.+ |++..|..++.
T Consensus 100 ~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~--v~i~vG~~~d~ 139 (172)
T PF03808_consen 100 SGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG--VIIGVGGAFDF 139 (172)
T ss_pred cCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC--EEEEECchhhh
Confidence 456777776652 35777777776655544 33344666665
No 97
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=26.42 E-value=1.1e+02 Score=27.18 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=36.3
Q ss_pred EEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcccccccc-CCCCeEEEEE-EecCCCCc--e-EEeCCCCE
Q 006889 532 VDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHV-TAGALQSVRL-DIHVCKHL--S-VVDKFGIR 598 (627)
Q Consensus 532 v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l-~pGes~~V~~-~l~~~~~l--s-~~d~~~~~ 598 (627)
|+|+|.=+..|.-.|+||=+...- .+.-+.+.+..+ ..+.+.+++| .|++ -.. + ++|++++.
T Consensus 1 V~V~gi~~~~G~v~v~ly~~~~~f----~~~~~~~~~~~~~~~~~~~~~~f~~lp~-G~YAi~v~hD~N~Ng 67 (112)
T PF09912_consen 1 VTVEGIRNDKGQVRVALYNSAEGF----ENKKKALKRVKVPAKGGTVTITFEDLPP-GTYAIAVFHDENGNG 67 (112)
T ss_pred CEecccCCCCcEEEEEEEcChhch----hhcccceeEEEEEcCCCcEEEEECCCCC-ccEEEEEEEeCCCCC
Confidence 578888888999999999763211 122333344433 3445667777 4554 333 2 56776543
No 98
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=26.39 E-value=4e+02 Score=22.61 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=31.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhccccccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
..+++++++|+.+.+-.=--.+|==+..+- ..|. .-.++++.|.|+|+.+|+..-+.
T Consensus 25 ~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 25 LLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred eEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 589999999999888333333333345443 2222 25688899999999999877665
No 99
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=26.28 E-value=2.2e+02 Score=27.09 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=30.0
Q ss_pred hHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEec
Q 006889 327 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (627)
Q Consensus 327 ~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~~ 387 (627)
..+....++.+|++|+++... +| +.....++++.+. ..+.|+|||++-
T Consensus 84 ~~~~~~~~~~~D~ailvVda~-----~g-------~~~~~~~~l~~~~-~~~~p~ivvlNK 131 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAN-----DG-------IQPQTEEHLKILR-ELGIPIIVVLNK 131 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETT-----TB-------STHHHHHHHHHHH-HTT-SEEEEEET
T ss_pred eecccceecccccceeeeecc-----cc-------ccccccccccccc-ccccceEEeeee
Confidence 345566788999999998532 11 2334455666654 457788888773
No 100
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=26.00 E-value=2.5e+02 Score=23.43 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=40.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhccccccccCCCCeEEEEEEecCCCCceEEeC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 594 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv~l~pGes~~V~~~l~~~~~ls~~d~ 594 (627)
.+++.+++.|.+.....-.+++.+..+.... ... .-..+.+..++...+.+++.. .....|+.
T Consensus 19 ~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 19 KVSVEVEVRNESNKPLDVTVRVRLFDPEGKK--VVT--QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEETTSEE--EEE--EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEeCCCCcEEEEEEEEEECCCCCE--EEE--eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 5777777899999999999999888776431 111 112334566666666555555 45678876
No 101
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=25.21 E-value=1.2e+02 Score=20.27 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHhhhhH
Q 006889 186 IHTEGAVRGGLLREEDVNLALAYTI 210 (627)
Q Consensus 186 ~~l~~av~~G~~~~~~id~av~Ril 210 (627)
..|.+...+|.||++..++.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4678889999999999999888876
No 102
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=25.18 E-value=2.1e+02 Score=28.96 Aligned_cols=82 Identities=26% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHHHHcCCCceEEeccccCCCcccccCHHHHHHHHhhhcCCCeEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcC
Q 006889 100 KACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLD 179 (627)
Q Consensus 100 ~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~ 179 (627)
++..+.| +.+||+--.-|..----.|++.|+ +++++. +--||-|.+- .++.+ +..+++-|+|-+
T Consensus 145 rrLee~G-caavMPl~aPIGSg~G~~n~~~l~-iiie~a--~VPviVDAGi-----------G~pSd-Aa~aMElG~DaV 208 (262)
T COG2022 145 RRLEEAG-CAAVMPLGAPIGSGLGLQNPYNLE-IIIEEA--DVPVIVDAGI-----------GTPSD-AAQAMELGADAV 208 (262)
T ss_pred HHHHhcC-ceEeccccccccCCcCcCCHHHHH-HHHHhC--CCCEEEeCCC-----------CChhH-HHHHHhccccee
Confidence 3444445 889998766664333445787774 778776 6678878742 13333 577899999988
Q ss_pred Chh----------hHHHHHHHHHhCCCC
Q 006889 180 CGP----------FLAIHTEGAVRGGLL 197 (627)
Q Consensus 180 ~~~----------~~~~~l~~av~~G~~ 197 (627)
+.. .+.+...-||+.|++
T Consensus 209 L~NTAiA~A~DPv~MA~Af~~Av~AGrl 236 (262)
T COG2022 209 LLNTAIARAKDPVAMARAFALAVEAGRL 236 (262)
T ss_pred ehhhHhhccCChHHHHHHHHHHHHHhHH
Confidence 742 244555666666643
No 103
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=24.70 E-value=2.4e+02 Score=28.29 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcccccc----ccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv----~l~pGes~~V~~~l~~ 585 (627)
.++++|+|+|+. .-.||..+.+......|.+.=.-|-=+ .|+||+.++++|....
T Consensus 35 ~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~ 93 (226)
T PRK15218 35 DITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA 93 (226)
T ss_pred EEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC
Confidence 578888999986 599999998754322221110123222 4899999999998653
No 104
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=24.48 E-value=1.7e+02 Score=27.78 Aligned_cols=52 Identities=21% Similarity=0.061 Sum_probs=31.7
Q ss_pred chHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHH--hcCCCEEEEEecC
Q 006889 326 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK--ASRGPVVLVLMCG 388 (627)
Q Consensus 326 ~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~--~~~kpvVVVl~~g 388 (627)
...+..+....||.+|++.=.. +...|+.-+.+|+.+.. -.+||++++..+|
T Consensus 58 ~~~~~~~~i~~AD~iIi~tP~Y-----------~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g 111 (174)
T TIGR03566 58 DAERILQAIESADLLVVGSPVY-----------RGSYTGLFKHLFDLVDPNALIGKPVLLAATGG 111 (174)
T ss_pred HHHHHHHHHHHCCEEEEECCcC-----------cCcCcHHHHHHHHhcCHhHhCCCEEEEEEecC
Confidence 4566677888999999865322 33566666667766531 1356766655443
No 105
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=24.16 E-value=1.3e+02 Score=25.86 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEe
Q 006889 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 386 (627)
Q Consensus 328 ~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~ 386 (627)
....+....+|++|+++-.+. .+.....++++.+. .++|+++|++
T Consensus 71 ~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N 115 (116)
T PF01926_consen 71 RKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN 115 (116)
T ss_dssp HHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence 345566688999999885221 12244567778874 5688988875
No 106
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.12 E-value=2.4e+02 Score=29.64 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=33.0
Q ss_pred cchHHHHHHhh------cCCEEEEEecCCcccccccCCCCCCCCCh-hHHHHHHHHHHhcCCCEEEEEecCcceecc
Q 006889 325 QLIGAAEVAAR------QADATVLVMGLDQSIEAEFIDRAGLLLPG-RQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (627)
Q Consensus 325 ~~~~~a~~~a~------~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~-~q~~Li~~v~~~~~kpvVVVl~~g~P~~l~ 394 (627)
..+-++.+.+. ..|++|++=|. +...+ |+. +..++++++++ ++.|||.- .|.=.|..
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGG--------Gs~eD--L~~FN~e~varai~~-~~~Pvisa--IGHe~D~t 121 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGG--------GSIED--LWAFNDEEVARAIAA-SPIPVISA--IGHETDFT 121 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCC--------CChHH--hcccChHHHHHHHHh-CCCCEEEe--cCCCCCch
Confidence 34445555544 46888876542 22222 333 57789999986 67886643 36655553
No 107
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.09 E-value=1.9e+02 Score=32.86 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=35.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCC-C-------Ccc-h---hhc---ccc--ccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-W-------SPN-K---QLI---GFK--KVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~-~-------~P~-k---~L~---gF~--kv~l~pGes~~V~~~l~~ 585 (627)
..+.+++|+|+++.+ ..|.|+=+.|.+. + .|. . ..+ |-- ++.|+|||+++++|....
T Consensus 443 ~~~~~i~v~N~~~~~--v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v 516 (525)
T TIGR02231 443 EYAYRITLKNLRKEP--ERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKV 516 (525)
T ss_pred EEEEEEEEEcCCCCc--eEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEE
Confidence 468899999998875 3455555556543 1 121 1 111 211 356899999988887765
No 108
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=23.99 E-value=1.1e+02 Score=33.49 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCEEEEEec-Ccceecc---cccC----CCCccEEEEccCCcchhHHHHHHHHhCCC
Q 006889 367 QELVSRVAKASRGPVVLVLMC-GGPVDVS---FAKN----DPRIGAILWVGYPGQAGGAAIADVLFGRA 427 (627)
Q Consensus 367 ~~Li~~v~~~~~kpvVVVl~~-g~P~~l~---~~~~----~~~v~Ail~a~~~G~e~g~AlAdVL~G~~ 427 (627)
.++|+++.+.+++||++|.+| |+++..- +... ...|+.+|...-|=.-+..|+..+++|+.
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~~ 175 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGDN 175 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhhh
Confidence 456777666568899999887 6666542 2211 13688888776665556789999999984
No 109
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=23.56 E-value=71 Score=33.49 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=31.0
Q ss_pred HhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHH----HHHHHHhcCCCEEEEEecCcceec
Q 006889 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 333 ~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~L----i~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
.++.+|++|++.|... .+|.+|.++ -....++ .+++.+.++ ..+++ +.+||+++
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~~-~~~vi-vvsNP~d~ 122 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASGF-DGIFL-VASNPVDV 122 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEE-EecChHHH
Confidence 3579999999998643 345566432 2222333 344444443 44444 34599987
No 110
>PLN00106 malate dehydrogenase
Probab=23.56 E-value=1.6e+02 Score=31.34 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=46.0
Q ss_pred HHHhhcCCEEEEEecCCcccccccCCCCCCCCChh---HHHHHHHHHHhcCCCEEEEEecCccee-----cccc----cC
Q 006889 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGR---QQELVSRVAKASRGPVVLVLMCGGPVD-----VSFA----KN 398 (627)
Q Consensus 331 ~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~---q~~Li~~v~~~~~kpvVVVl~~g~P~~-----l~~~----~~ 398 (627)
.+..+.+|+||+..|... .+|.+|.++ |+.+ -.++++++.+.+. ..|+++. .||+| |.+. ..
T Consensus 81 ~~~l~~aDiVVitAG~~~---~~g~~R~dl-l~~N~~i~~~i~~~i~~~~p-~aivivv-SNPvD~~~~i~t~~~~~~s~ 154 (323)
T PLN00106 81 GDALKGADLVIIPAGVPR---KPGMTRDDL-FNINAGIVKTLCEAVAKHCP-NALVNII-SNPVNSTVPIAAEVLKKAGV 154 (323)
T ss_pred HHHcCCCCEEEEeCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCC-CeEEEEe-CCCccccHHHHHHHHHHcCC
Confidence 456789999999988543 234445432 1111 2345566665543 4555544 59998 4421 12
Q ss_pred CCCccEEEEccCCcchhHHHHHHHH
Q 006889 399 DPRIGAILWVGYPGQAGGAAIADVL 423 (627)
Q Consensus 399 ~~~v~Ail~a~~~G~e~g~AlAdVL 423 (627)
.|.-+.+=.+.....-....+|+.+
T Consensus 155 ~p~~~viG~~~LDs~Rl~~~lA~~l 179 (323)
T PLN00106 155 YDPKKLFGVTTLDVVRANTFVAEKK 179 (323)
T ss_pred CCcceEEEEecchHHHHHHHHHHHh
Confidence 2222333233455545556667665
No 111
>PTZ00325 malate dehydrogenase; Provisional
Probab=23.44 E-value=67 Score=34.11 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=33.4
Q ss_pred HHHhhcCCEEEEEecCCcccccccCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEecCcceec
Q 006889 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (627)
Q Consensus 331 ~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~---~q~~Li~~v~~~~~kpvVVVl~~g~P~~l 393 (627)
.+..+.+|+||++.|... .++.+|.++ |.. .-.++++++.+...+ -||++ +.+|++.
T Consensus 71 ~~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~~~-~iviv-~SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSAPK-AIVGI-VSNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHCCC-eEEEE-ecCcHHH
Confidence 356789999999998643 233444433 222 234566677665443 44443 3589887
No 112
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=22.95 E-value=2.7e+02 Score=28.42 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC-CCcchhhccccc----cccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKK----VHVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~-~~P~k~L~gF~k----v~l~pGes~~V~~~l~~ 585 (627)
.++++|+|+++.. -.||..+.+.... ..| |-= ..|+||+.++|+|....
T Consensus 57 ~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~p------FiVtPPLfRLep~~~~~lRIi~~~ 110 (246)
T PRK15233 57 STSFWIMNEKEYP--ILVQTQVYNDDKSSKAP------FIVTPPILKVESNARTRLKVIPTS 110 (246)
T ss_pred EEEEEEEcCCCCc--EEEEEEEecCCCCccCC------EEECCCeEEECCCCceEEEEEECC
Confidence 5788889998664 8999999865432 111 211 24899999999998764
No 113
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=22.82 E-value=92 Score=29.34 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=14.5
Q ss_pred cccCCCCeEEEEEEecC
Q 006889 569 VHVTAGALQSVRLDIHV 585 (627)
Q Consensus 569 v~l~pGes~~V~~~l~~ 585 (627)
+.|+||+|.+.++.++.
T Consensus 116 v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 116 VTLAPGKSGELVVVFTG 132 (158)
T ss_pred eEeCCCCcEEEEEEecC
Confidence 46999999999888874
No 114
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=22.78 E-value=2.3e+02 Score=28.67 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcccccc----ccCCCCeEEEEEEec
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV----HVTAGALQSVRLDIH 584 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv----~l~pGes~~V~~~l~ 584 (627)
.++++|+|+++. .-.||..+........|.+.=.-|-=+ .|+||+.++|+|...
T Consensus 27 ~~sv~l~N~~~~--p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~ 84 (233)
T PRK15246 27 AQSLTLSNDNTT--PMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS 84 (233)
T ss_pred eEEEEEEeCCCC--cEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC
Confidence 578899999976 689999997543222222110123222 489999999998765
No 115
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=22.71 E-value=4.2e+02 Score=27.69 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=39.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhhcc-ccccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIG-FKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L~g-F~kv~l~pGes~~V~~~l~~ 585 (627)
.+-|.|+|+|...-.-=..-+..+..+. ..+.|.+.= ++.=.|.||++..|-++.+.
T Consensus 203 ~vav~v~l~N~~g~~PW~~~~A~L~g~~--G~~lr~~~V~~~~~~i~PG~~grVvVe~e~ 260 (289)
T PF09544_consen 203 WVAVVVTLRNLSGQPPWTPGEARLTGPS--GEPLRALAVRWQEGPIAPGGSGRVVVEAEA 260 (289)
T ss_pred eEEEEEEEECCCCCCCceeeEEEEECCC--CCcceeeeeecccCccCCCCceeEEEEecC
Confidence 5789999999554433444466666554 344555444 66667999999999999986
No 116
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=22.61 E-value=1.1e+02 Score=26.43 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=13.1
Q ss_pred eEEEEEEEEeCCCCC
Q 006889 527 SLGLHVDIKNTGDMA 541 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~ 541 (627)
.+...|+|+|+|+.+
T Consensus 14 Gf~~~v~v~N~~~~~ 28 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSP 28 (101)
T ss_dssp EEEEEEEEEESSSST
T ss_pred CeEEEEEEEECCCCc
Confidence 489999999999875
No 117
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=22.44 E-value=2.9e+02 Score=27.86 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=34.4
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCC--CCcchhhccccc----cccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGN--WSPNKQLIGFKK----VHVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~--~~P~k~L~gF~k----v~l~pGes~~V~~~l~~ 585 (627)
.++++|+|+|+. .-.||..+.+.... ..| |-= ..|+||++++|+|-...
T Consensus 39 ~~si~i~N~~~~--p~LvQswv~~~~~~~~~~p------FivtPPlfrl~p~~~q~lRI~~~~ 93 (229)
T PRK15211 39 NISFEVTNQADQ--TYGGQVWIDNTTQGSSTVY------MVPAPPFFKVRPKEKQIIRIMKTD 93 (229)
T ss_pred eEEEEEEeCCCC--cEEEEEEEecCCCCCccCC------EEEcCCeEEECCCCceEEEEEECC
Confidence 578899999986 48999999764321 112 211 24899999999987653
No 118
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=22.42 E-value=2.5e+02 Score=27.79 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=40.5
Q ss_pred HHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCcceecccccCCCCccEEEEc
Q 006889 329 AAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWV 408 (627)
Q Consensus 329 ~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~~~~~kpvVVVl~~g~P~~l~~~~~~~~v~Ail~a 408 (627)
+.++....||.+|+..... |+..|..-...|+.++.+ +| +-=.. .-+|.-|.. .-++++..
T Consensus 80 ~l~~ef~aAD~vVi~~PM~-----------Nf~iPa~LK~yiD~i~~a-Gk-TFkYt-e~Gp~GLl~-----gKKv~~l~ 140 (202)
T COG1182 80 KLLEEFLAADKVVIAAPMY-----------NFNIPAQLKAYIDHIAVA-GK-TFKYT-ENGPVGLLT-----GKKVLILT 140 (202)
T ss_pred HHHHHHHhcCeEEEEeccc-----------ccCCCHHHHHHHHHHhcC-Cc-eEEec-cCCcccccC-----CceEEEEE
Confidence 3455667899999876322 688999999999999864 54 33222 235665531 23455554
Q ss_pred cCCc
Q 006889 409 GYPG 412 (627)
Q Consensus 409 ~~~G 412 (627)
...|
T Consensus 141 srGG 144 (202)
T COG1182 141 SRGG 144 (202)
T ss_pred CCCC
Confidence 4444
No 119
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=22.20 E-value=35 Score=30.06 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.4
Q ss_pred ccccCcCCCCCCceeCC
Q 006889 471 VFPFGHGMSYTTFAHTL 487 (627)
Q Consensus 471 ~ypFG~GLSYTtF~ys~ 487 (627)
.|-.-||+.||+|....
T Consensus 31 ~y~~~~g~g~~~f~~~~ 47 (110)
T PF06165_consen 31 EYEVRHGFGYTRFERED 47 (110)
T ss_dssp EEEEEEESSEEEEEEEE
T ss_pred cEEEEECCCeEEEEEEe
Confidence 57899999999998654
No 120
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=22.19 E-value=5e+02 Score=22.19 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=38.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEEEeC----CCCC-CCcchhhccccccccCCCCeEEEEEEecC
Q 006889 527 SLGLHVDIKNTGDMAGTHTLLVFAKP----PAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 527 ~~~v~v~VtNtG~~~G~evvQlY~~~----p~~~-~~P~k~L~gF~kv~l~pGes~~V~~~l~~ 585 (627)
..++++.|+|+.+.+ ++|+.++ ..+- ..|. ...++.+.|.++|+.+|...-+.
T Consensus 33 ~~~~~~~l~N~~~~~----~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 33 LLEAQATLSNTSSKP----LTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred eEEEEEEEEeCCCCC----EEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 589999999999877 5665554 4443 2222 56788899999999988876654
No 121
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=22.16 E-value=1.8e+02 Score=25.60 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=29.8
Q ss_pred EEEEEEEeCCCCCcceEEEEEEeCCCCCCCcchhh-ccccccccCCCCeEEEEEEecC
Q 006889 529 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQL-IGFKKVHVTAGALQSVRLDIHV 585 (627)
Q Consensus 529 ~v~v~VtNtG~~~G~evvQlY~~~p~~~~~P~k~L-~gF~kv~l~pGes~~V~~~l~~ 585 (627)
.-+++|+|...-+ ..+++=+..+. --+| .+...+.|+|||++++.|.|..
T Consensus 34 ~Y~lkl~Nkt~~~--~~~~i~~~g~~-----~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQP--RTYTISVEGLP-----GAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS---EEEEEEEES-S-----S-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCC--EEEEEEEecCC-----CeEEECCCcceEECCCCEEEEEEEEEE
Confidence 4678889988766 23555555432 2345 5667888999999999998876
No 122
>PRK00170 azoreductase; Reviewed
Probab=22.12 E-value=1.8e+02 Score=28.02 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=26.5
Q ss_pred chHHHHHHhhcCCEEEEEecCCcccccccCCCCCCCCChhHHHHHHHHH
Q 006889 326 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 374 (627)
Q Consensus 326 ~~~~a~~~a~~aD~vIv~vg~~~~~~~Eg~Dr~~l~L~~~q~~Li~~v~ 374 (627)
...+..+....||.+|++.=.. .+.+|+.-+.+|+.+.
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP~y-----------~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAPMY-----------NFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHHHHHHHHHCCEEEEeeccc-----------ccCCcHHHHHHHHhhe
Confidence 3456677788999999875221 3567777777887775
No 123
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=21.99 E-value=4.6e+02 Score=21.64 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=36.4
Q ss_pred eEEEEEEEEeC------CCCCcceEEEEEEeCCCCCCCcchhhcccccc-ccCCCCeEEEEEEecCCCCceEEeCCCCEE
Q 006889 527 SLGLHVDIKNT------GDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRR 599 (627)
Q Consensus 527 ~~~v~v~VtNt------G~~~G~evvQlY~~~p~~~~~P~k~L~gF~kv-~l~pGes~~V~~~l~~~~~ls~~d~~~~~~ 599 (627)
.+.+.+.+-+. ....-..-+++++..-.. +- .+.-+.+- .|+|||+..|.|.+.. .+. .+..+.++
T Consensus 5 ~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~---~~-~i~~l~~~~~i~~g~~~~v~l~l~~--pv~-~~~~~rf~ 77 (90)
T cd03707 5 KFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDV---TG-SITLPEGTEMVMPGDNVKMTVELIH--PIA-LEKGLRFA 77 (90)
T ss_pred EEEEEEEEEcccccCCCCcccCCceeEEEeccCeE---EE-EEEccCcccccCCCCEEEEEEEECC--cEE-EecCCEEE
Confidence 35566666553 233334455666654321 11 11222233 3899999999999975 453 33344555
Q ss_pred e
Q 006889 600 I 600 (627)
Q Consensus 600 ~ 600 (627)
+
T Consensus 78 l 78 (90)
T cd03707 78 I 78 (90)
T ss_pred E
Confidence 5
No 124
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=20.88 E-value=1.1e+02 Score=35.83 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=34.8
Q ss_pred HHHhhhcCCCeEEEcChhhhhhhhccccccCChHHHHHHHHHcCCCcCC
Q 006889 132 NTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC 180 (627)
Q Consensus 132 ~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D~~~ 180 (627)
+=|++-+||+|.|+||.++.+.+.-. ....++++.+.---.-|.|+.|
T Consensus 72 gGlH~f~~w~g~ilTDSGgfQv~s~g-~~~~tpe~~i~~Q~~iGsDI~~ 119 (639)
T PRK13534 72 KGIHSLIGFDGPIMTDSGSFQLSVYG-DVEVTNREIIEFQEKIGVDIGT 119 (639)
T ss_pred CChHHHhCCCCCeEecCCceeeeecC-ccccCHHHHHHHHHHhCCCEEE
Confidence 34667789999999999998765432 2345777765555567999987
No 125
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=20.75 E-value=2e+02 Score=29.13 Aligned_cols=83 Identities=25% Similarity=0.202 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCceEEeccccCCCcccccCHHHHHHHHhhhcCCCeEEEcChhhhhhhhccccccCChHHHHHHHHHcCCC
Q 006889 98 PFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLD 177 (627)
Q Consensus 98 pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~~LR~e~gf~G~v~SD~~~~~~~~~~~~~~~~~~~a~~~al~AG~D 177 (627)
-.+++.+.| +.+||+--.-|..----.|++.|. +++++. +=-||-|.+ + .++.+ +..|++-|+|
T Consensus 136 ~akrL~d~G-caavMPlgsPIGSg~Gi~n~~~l~-~i~~~~--~vPvIvDAG-i----------G~pSd-aa~AMElG~d 199 (247)
T PF05690_consen 136 LAKRLEDAG-CAAVMPLGSPIGSGRGIQNPYNLR-IIIERA--DVPVIVDAG-I----------GTPSD-AAQAMELGAD 199 (247)
T ss_dssp HHHHHHHTT--SEBEEBSSSTTT---SSTHHHHH-HHHHHG--SSSBEEES--------------SHHH-HHHHHHTT-S
T ss_pred HHHHHHHCC-CCEEEecccccccCcCCCCHHHHH-HHHHhc--CCcEEEeCC-C----------CCHHH-HHHHHHcCCc
Confidence 347777777 889999777774333456777775 667777 445666763 2 13444 5778999999
Q ss_pred cCChh----------hHHHHHHHHHhCCC
Q 006889 178 LDCGP----------FLAIHTEGAVRGGL 196 (627)
Q Consensus 178 ~~~~~----------~~~~~l~~av~~G~ 196 (627)
=.+.. .+......||+.|+
T Consensus 200 aVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 200 AVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp EEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred eeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 88732 24456666666653
No 126
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=20.04 E-value=1.2e+02 Score=20.57 Aligned_cols=25 Identities=12% Similarity=0.015 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHhhhhHHHHHHhCC
Q 006889 194 GGLLREEDVNLALAYTITVQMRLGM 218 (627)
Q Consensus 194 ~G~~~~~~id~av~Ril~~k~~lGl 218 (627)
.|.|+.+.+-+++.||...+.+-|-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999888764
Done!