BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006890
(627 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/644 (41%), Positives = 385/644 (59%), Gaps = 49/644 (7%)
Query: 2 AEILAALRSLMSSHD---PPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALIT 58
+E+L LR M + + P+ A ++PS D HQSEY++ D RR FVSGF GSAG A+IT
Sbjct: 7 SELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIIT 66
Query: 59 MNEALLWTDGRYFLQATQELTGEWKLMRM-LED-PAVDVWMANNLPNDAAIGVDPWCVSI 116
A +WTDGRYFLQA +++ W LM+M L+D P + W+ + LP + +GVDP +
Sbjct: 67 EEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPT 126
Query: 117 DTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELR 176
D ++ + L+ NLVDK+W +RP P+ +++ G S +K+ +LR
Sbjct: 127 DYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLR 186
Query: 177 EKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEV 236
K+ ++T LDE+AWL+N+RG+DV + PV ++AI+ L++D ++ +
Sbjct: 187 LKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPS 246
Query: 237 IS--FLKESGVE------VRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYAL 288
+ L + G+E V Y ++ S++ L AD+ + +W + SYA+
Sbjct: 247 VKEHLLLDLGLEAEYRIQVHPYKSILSELKALC-------ADLSPREKVWVS-DKASYAV 298
Query: 289 YSKLNSD-KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGA 347
+ D + + +P+ +AKA+KN E +G+++AHI+D A+ + WL+K++ +
Sbjct: 299 SETIPKDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPK---- 354
Query: 348 SGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHY 407
G V TE++ +DK E FR + F LSFPTISS GP AI+HY
Sbjct: 355 ----------------GGV--TEISAADKAEEFRRQQADFVDLSFPTISSTGPTGAIIHY 396
Query: 408 SPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGN 467
+P ET + + +YL DSGAQY+DGTTD+TRT HF P+A+EK C+T VLKGHIA+
Sbjct: 397 APVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSA 456
Query: 468 AVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKP-RNVPIHA 526
AVFP GT GH LD AR LW GLDY HGTGHGVGS+LNVHEGP IS+K + P+ A
Sbjct: 457 AVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEA 516
Query: 527 SMTATDEPGYYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIKMINLKS 586
M TDEPGYYEDG FGIR+ENV++V TK+NF ++G L+ E +T P Q KMI++ S
Sbjct: 517 GMIVTDEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDS 576
Query: 587 LTPEEIDWLNAYHSKCRDILAPYLD----EAELAWLKKATEPAS 626
LT +E DWLN YH CRD++ L + L WL + T+P S
Sbjct: 577 LTDKECDWLNNYHLTCRDVIGKELQKQGRQEALEWLIRETQPIS 620
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 17/220 (7%)
Query: 337 LDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTIS 396
++K Q I + FLE T ++ +G +TE ++ LE + KE G++F TI
Sbjct: 139 IEKIKQAIEISERAFLE---TVQQIRAG---MTEKEIAALLE-YTMRKEGAEGVAFDTIV 191
Query: 397 SVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYT 456
+ G +A+ H + D + + D GA Y++ DITR G+PS K ++
Sbjct: 192 ASGCRSALPHGKASDKVVERGD---VIVIDFGATYENYCADITRVVSIGEPSDEVKEVHS 248
Query: 457 AVLKGHIALGNAVFPNGTCGHTLDILARLPLWK--YGLDYRHGTGHGVGSYLNVHEGPQS 514
VL+ + G G LD +AR + + YG + H GHG+G L VHEGP +
Sbjct: 249 IVLEAQ-ERALKIAKAGVTGKLLDSVAREFIREKGYGEFFGHSLGHGIG--LEVHEGP-A 304
Query: 515 ISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 554
ISF+ + P+ ++ T EPG Y +G FGIR+E +V+ +
Sbjct: 305 ISFR-NDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVLKE 343
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 44 FVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPN 103
+ SGFTGS + LI+ N LL TD RY +QA QE E + ++ + V N+L
Sbjct: 34 YFSGFTGSFSIILISENTRLLITDSRYTVQAKQETDFEVREVKGGDFIDVLKKTVNDLKI 93
Query: 104 DAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEF 163
I ++ VS+ +R AF ++ + + ++ K+ +E Q IE
Sbjct: 94 -KTIALEEERVSLSLFRRISSAFGDRKFIGIDDEVKQM-RMVKDEGEIEKIK---QAIEI 148
Query: 164 AGSSVVEKLKELREKLTNEK 183
+ + +E ++++R +T ++
Sbjct: 149 SERAFLETVQQIRAGMTEKE 168
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 368 LTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDS 427
++E+ VS++LE F K+ SF I + G +A+ H SE E D
Sbjct: 161 VSEIEVSNELEFF-MRKQGATSSSFDIIVASGLRSALPH-GVASEKVIE--TGDFVTLDF 216
Query: 428 GAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILAR--L 485
GA Y+ +DITRT G+PS K Y VL+ + N + G G D L R +
Sbjct: 217 GAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGI-KAGLTGREADALTRDYI 275
Query: 486 PLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIR 545
YG + H TGHG+G L +HE P ++F+ V + M T EPG Y G G+R
Sbjct: 276 TEKGYGEYFGHSTGHGIG--LEIHEAP-GLAFRSDTV-LEPGMAVTVEPGIYIPGIGGVR 331
Query: 546 LENVLVVT 553
+E+ ++VT
Sbjct: 332 IEDDIIVT 339
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 42 REFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTG 80
R +++ FTG+AG+ LI+ A TD RY QA+++ G
Sbjct: 30 RRYMANFTGTAGVVLISKKRAQFITDFRYVEQASKQAVG 68
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 390 LSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSA 449
+SF I + GPN A H+ P + D + + D GA+Y +D+TRT G PS
Sbjct: 203 VSFEPIVASGPNGANPHHRPSHRKIRKGD---VVIFDYGAKYLGYCSDVTRTVVVGPPSE 259
Query: 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHGVGSYLN 507
K Y V + V G +D AR + KYG + H TGHG+G ++
Sbjct: 260 EVKKVYEIVKEAQETAVQKV-AEGIPAEVVDATARGIISKYGYGEYFIHRTGHGLG--ID 316
Query: 508 VHEGPQSISFKPRNVPI-HASMTATDEPGYYEDGNFGIRLENVLVVTD 554
VHE P P N I M T EPG Y G FG+R+E+ + + D
Sbjct: 317 VHEEPY---ISPGNKKILKDGMVFTIEPGIYLQGKFGVRIEDDVALVD 361
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 16/199 (8%)
Query: 368 LTEVTVSDKLESFRASKEHFRGL------SFPTISSVGPNAAIMHYSPQSETCAEMDPNS 421
+ E+T K A E+ + +F TI + G +A+ H + D
Sbjct: 151 IEEITEGKKEREVAAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGVASDKRIERGD--- 207
Query: 422 IYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDI 481
+ + D GA YQ +DITRT G P+ +K Y VL+ + P G LD
Sbjct: 208 LVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKP-GITAKELDS 266
Query: 482 LAR--LPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYED 539
+AR + + YG + H GHGVG L VHE P+ + + M T EPG Y
Sbjct: 267 IARNIIAEYGYGEYFNHSLGHGVG--LEVHEWPRVSQYD--ETVLREGMVITIEPGIYIP 322
Query: 540 GNFGIRLENVLVVTDANTK 558
G+R+E+ +++T +K
Sbjct: 323 KIGGVRIEDTILITKNGSK 341
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 13/189 (6%)
Query: 369 TEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSG 428
TE V+ + ++ H ++F + S GP+ A H+ ++ I + D G
Sbjct: 182 TEAQVAADIAEAIVAEGH-SAVAFVIVGS-GPHGADPHHGYSDR---KLQVGDIVVVDIG 236
Query: 429 AQYQDGT-TDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPL 487
Y+ G +D TRT+ G PS Y+A+ + A +AV P G +D AR L
Sbjct: 237 GTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDAVRP-GVTAAQVDAAARDVL 295
Query: 488 WKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIR 545
GL + H TGHG+G L VHE P ++ +P+ A M + EPG Y G +G R
Sbjct: 296 ADAGLAEYFVHRTGHGIG--LCVHEEPYIVAGN--ELPLVAGMAFSIEPGIYFPGRWGAR 351
Query: 546 LENVLVVTD 554
+E+++VVT+
Sbjct: 352 IEDIVVVTE 360
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAH 450
+F TI + G +A+ H + D + + D GA Y +DITRT G P+
Sbjct: 177 AFDTIIASGHRSALPHGVASDKRIERGD---LVVIDLGALYNHYNSDITRTIVVGSPNEK 233
Query: 451 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL-DYR-HGTGHGVGSYLNV 508
++ Y VL+ A P G LD +AR + +YG DY H GHGVG L +
Sbjct: 234 QREIYEIVLEAQKRAVEAAKP-GMTAKELDSIAREIIKEYGYGDYFIHSLGHGVG--LEI 290
Query: 509 HEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTK 558
HE P+ + + M T EPG Y G+R+E+ +++T+ K
Sbjct: 291 HEWPRISQYD--ETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENGAK 338
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 81/173 (46%), Gaps = 12/173 (6%)
Query: 389 GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPS 448
G++F I + G NAA H+ P + D I + D GA+++ +DITRT G+
Sbjct: 181 GIAFEPIVASGENAANPHHEPGERKIRKGD---IIILDYGARWKGYCSDITRTIGLGELD 237
Query: 449 AHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWK--YGLDYRHGTGHGVGSYL 506
Y V + AV G +D AR + K YG + H TGHG+G L
Sbjct: 238 ERLVKIYEVVKDAQESAFKAV-REGIKAKDVDSRAREVISKAGYGEYFIHRTGHGLG--L 294
Query: 507 NVHEGPQSISFKPRN-VPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTK 558
+VHE P P V + MT T EPG Y G G+R+E+ +VV + +
Sbjct: 295 DVHEEPY---IGPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGKGR 344
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ C EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYTENE--CXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 285
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 286 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 344
Query: 494 YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDGNFGI 544
+R HG+ ++L + + + R+ + M T EPG Y + GI
Sbjct: 345 HRPFFMHGLSAWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGI 404
Query: 545 RLENVLVVTDANTK 558
R+E+ +V+T+ +
Sbjct: 405 RIEDDIVITETGNE 418
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 87/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDGNFGI 544
+R HG+ +L + + + R+ + M T EPG Y + GI
Sbjct: 344 HRPFFMHGLSHWLGLDVADVGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYRGIGI 403
Query: 545 RLENVLVVTDANTK 558
R+E+ +V+T+ +
Sbjct: 404 RIEDDIVITETGNE 417
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ HG H +G L+VH+ + + R+ + M T PG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ HG H +G L+VH+ + + R+ + M T PG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L +G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIAAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L D+G +Y+ ITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGAITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ G H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMAGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 38/198 (19%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+ Y+ E EM + L D+G +Y+ DITRTF GK +
Sbjct: 228 SYNTIVGSGENGCILAYT---ENEXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 450 HEKACYTAVLKGHIALGNAVFPNGT-----CGHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 285 AQREIYDIVLES-LETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNA 343
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---------EDG 540
+ HG H +G L+VH+ + + R+ + M T EPG Y +
Sbjct: 344 HRPFFMHGLSHWLG--LDVHD--VGVYGQDRSRILEPGMVLTVEPGLYIAPDAEVPEQYR 399
Query: 541 NFGIRLENVLVVTDANTK 558
GIR+E+ +V+T+ +
Sbjct: 400 GIGIRIEDDIVITETGNE 417
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 352 LEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHY---- 407
+ EA +E + V + E + E + S+ R S+ I G N+A++HY
Sbjct: 202 ISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAG 261
Query: 408 SPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTF-HFGKPSAHEKACYTAVLKGHIALG 466
+P T D + L D G +Y +DIT +F GK +A +KA Y AVL+ A+
Sbjct: 262 APNDRTIQNGD---MCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVM 318
Query: 467 NAVFPN 472
A+ P
Sbjct: 319 GAMKPG 324
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 30/180 (16%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTF-HFGKPSA 449
+F TI + G NA ++HY A++ + L D GAQ DI+ TF G S+
Sbjct: 224 AFNTILASGKNATVLHYEDND---AQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSS 280
Query: 450 HEKACYTAVLKGHIALGNAVFPN----GTCGHTLDILAR-----------LPLWKYGLDY 494
+K Y VL + P H +LA L KY Y
Sbjct: 281 RQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKY---Y 337
Query: 495 RHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY-EDGNFGIRLENVLVVT 553
HG H +G L+ H+ ++K R + T EPG Y E+ + GIR+E+ ++VT
Sbjct: 338 YHGVSHFLG--LDTHDVG---TYKDR--VLEEGXVITIEPGLYIEEESIGIRIEDDILVT 390
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 77/203 (37%), Gaps = 44/203 (21%)
Query: 392 FPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHE 451
+ I ++ N AI+HY+ + A S +L D+GA + DITRT+ F E
Sbjct: 212 YGNIVALNENCAILHYT-HFDRVAPATHRS-FLIDAGANFNGYAADITRTYDFTGEG--E 267
Query: 452 KACYTAVLKGH-IALGNAVFPNGTCGHT-LDILARLP---------------LWKYGLD- 493
A A +K H IAL N + P G LD R+ + G+
Sbjct: 268 FAELVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITS 327
Query: 494 --YRHGTGHGVGSYLNVH--------------EGPQSISFKPRNVPIHASMTATDEPGYY 537
+ HG GH +G L VH E P+ F I A+ T EPG Y
Sbjct: 328 TFFPHGLGHHIG--LQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLY 385
Query: 538 EDGNFGIRLENVLVVTDANTKFN 560
F L L TD N N
Sbjct: 386 ----FIDSLLGDLAATDNNQHIN 404
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 382 ASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRT 441
AS++ + + +I ++ +A+I+HY Q +T A + S +L D+GA Y DITRT
Sbjct: 202 ASRQGDNDVPYTSIVALNEHASILHYM-QXDTVAPKESRS-FLIDAGANYHGYAADITRT 259
Query: 442 FHFGKPSAHEKACYTAVLKG 461
+ + H A + +++
Sbjct: 260 --YAQEGVHNSAMFRDLIQA 277
>pdb|3OVK|A Chain A, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|B Chain B, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|C Chain C, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|D Chain D, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
Length = 132
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 44 FVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTG 80
+++GF+G+A LIT +L TD RY L A + G
Sbjct: 37 YLTGFSGTAATVLITAKRRVLITDSRYTLLAKASVEG 73
>pdb|3O59|X Chain X, Dna Polymerase D Large Subunit Dp2(1-300) From Pyrococcus
Horikoshii
Length = 300
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 500 HGVGSYLNVHEGPQSISFKPRNVPIHASMTATDE 533
H S L H P+ + RN+PI + ATDE
Sbjct: 195 HRTVSRLQYHPSPEEVRLAXRNIPIEITGEATDE 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,725,306
Number of Sequences: 62578
Number of extensions: 846830
Number of successful extensions: 2194
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2139
Number of HSP's gapped (non-prelim): 28
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)