Query 006890
Match_columns 627
No_of_seqs 407 out of 2916
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 15:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2413 Xaa-Pro aminopeptidase 100.0 2E-134 4E-139 1060.7 42.1 589 3-625 10-606 (606)
2 PRK09795 aminopeptidase; Provi 100.0 7.8E-63 1.7E-67 525.5 36.0 346 2-579 1-355 (361)
3 COG0006 PepP Xaa-Pro aminopept 100.0 2.9E-60 6.2E-65 510.2 34.4 361 163-580 5-381 (384)
4 TIGR02993 ectoine_eutD ectoine 100.0 1.3E-56 2.8E-61 481.5 33.2 364 162-581 5-389 (391)
5 PRK14575 putative peptidase; P 100.0 3E-55 6.6E-60 472.4 32.2 359 171-579 12-402 (406)
6 PRK14576 putative endopeptidas 100.0 1.1E-53 2.3E-58 460.3 32.4 358 172-579 13-401 (405)
7 PRK10879 proline aminopeptidas 100.0 3.7E-50 8.1E-55 435.8 31.1 349 166-582 4-428 (438)
8 PRK15173 peptidase; Provisiona 100.0 4.9E-49 1.1E-53 411.3 28.4 260 273-579 54-319 (323)
9 PRK12897 methionine aminopepti 100.0 4.3E-45 9.3E-50 369.2 24.8 216 308-557 2-242 (248)
10 PRK13607 proline dipeptidase; 100.0 2.4E-44 5.1E-49 389.4 28.8 223 299-557 150-433 (443)
11 cd01085 APP X-Prolyl Aminopept 100.0 2.4E-44 5.3E-49 356.7 24.7 216 318-557 1-219 (224)
12 PRK07281 methionine aminopepti 100.0 1.9E-44 4.1E-49 368.1 24.7 228 307-579 1-284 (286)
13 PRK12318 methionine aminopepti 100.0 1.3E-43 2.7E-48 364.4 25.2 227 304-576 36-290 (291)
14 TIGR00500 met_pdase_I methioni 100.0 4.4E-43 9.6E-48 354.8 24.4 215 309-557 2-241 (247)
15 KOG2737 Putative metallopeptid 100.0 7.4E-43 1.6E-47 347.0 24.0 236 302-582 177-474 (492)
16 PRK05716 methionine aminopepti 100.0 2E-42 4.3E-47 351.3 24.6 225 307-577 2-251 (252)
17 cd01090 Creatinase Creatine am 100.0 9.9E-42 2.2E-46 339.6 23.4 207 316-557 1-223 (228)
18 PRK12896 methionine aminopepti 100.0 1.9E-41 4.1E-46 344.7 24.0 218 306-557 6-249 (255)
19 cd01087 Prolidase Prolidase. E 100.0 2.2E-41 4.8E-46 341.6 22.7 206 316-557 1-238 (243)
20 PLN03158 methionine aminopepti 100.0 6.3E-41 1.4E-45 354.6 25.5 236 302-582 129-389 (396)
21 KOG2414 Putative Xaa-Pro amino 100.0 8.9E-40 1.9E-44 328.7 24.2 238 296-582 214-480 (488)
22 cd01091 CDC68-like Related to 100.0 8.6E-40 1.9E-44 327.7 22.3 212 316-557 1-237 (243)
23 cd01092 APP-like Similar to Pr 100.0 1.7E-39 3.8E-44 320.0 23.6 206 316-557 1-208 (208)
24 cd01086 MetAP1 Methionine Amin 100.0 1.1E-38 2.4E-43 320.9 23.2 208 316-557 1-233 (238)
25 PF00557 Peptidase_M24: Metall 100.0 1.7E-37 3.7E-42 305.6 20.0 203 317-554 1-207 (207)
26 cd01066 APP_MetAP A family inc 100.0 1.2E-35 2.5E-40 291.4 23.4 205 316-557 1-207 (207)
27 cd01089 PA2G4-like Related to 100.0 4.7E-35 1E-39 292.2 21.0 207 316-557 1-223 (228)
28 COG0024 Map Methionine aminope 100.0 4.5E-30 9.8E-35 253.1 24.1 222 309-576 4-253 (255)
29 TIGR00495 crvDNA_42K 42K curve 100.0 2.4E-29 5.3E-34 267.2 25.5 198 308-537 11-232 (389)
30 PTZ00053 methionine aminopepti 100.0 1.9E-29 4.1E-34 269.0 22.4 200 307-542 149-364 (470)
31 PRK08671 methionine aminopepti 100.0 2.4E-29 5.2E-34 259.3 21.4 194 315-545 1-196 (291)
32 TIGR00501 met_pdase_II methion 100.0 3.4E-29 7.4E-34 258.2 21.3 198 313-547 2-201 (295)
33 cd01088 MetAP2 Methionine Amin 100.0 3.9E-28 8.4E-33 250.3 20.8 195 316-547 1-197 (291)
34 KOG2738 Putative methionine am 100.0 3.9E-27 8.5E-32 228.4 19.9 223 308-575 114-360 (369)
35 KOG1189 Global transcriptional 99.9 5.4E-24 1.2E-28 228.0 18.9 260 296-597 123-400 (960)
36 COG5406 Nucleosome binding fac 99.8 6.7E-19 1.4E-23 185.4 17.4 232 296-557 156-412 (1001)
37 PF01321 Creatinase_N: Creatin 99.7 5.2E-16 1.1E-20 141.0 10.2 126 4-147 1-132 (132)
38 TIGR02993 ectoine_eutD ectoine 99.6 4.5E-15 9.8E-20 159.9 17.5 135 1-152 11-163 (391)
39 COG0006 PepP Xaa-Pro aminopept 99.6 5.2E-14 1.1E-18 151.6 19.0 329 2-446 11-367 (384)
40 PRK14575 putative peptidase; P 99.5 1.3E-12 2.9E-17 141.3 18.1 132 4-152 12-183 (406)
41 PRK14576 putative endopeptidas 99.3 2.6E-11 5.7E-16 131.2 17.5 130 6-152 14-182 (405)
42 KOG2775 Metallopeptidase [Gene 99.2 2.2E-10 4.8E-15 112.4 14.8 163 364-534 106-284 (397)
43 PF01321 Creatinase_N: Creatin 99.2 5.8E-11 1.3E-15 107.6 8.0 127 171-310 1-132 (132)
44 KOG2776 Metallopeptidase [Gene 99.1 1.8E-08 3.9E-13 101.8 20.6 156 307-492 12-182 (398)
45 PRK09795 aminopeptidase; Provi 98.2 4.8E-06 1E-10 89.1 8.9 106 170-294 2-110 (361)
46 PRK10879 proline aminopeptidas 98.0 0.00017 3.6E-09 79.2 15.5 64 2-69 7-79 (438)
47 PRK15173 peptidase; Provisiona 97.6 0.00049 1.1E-08 72.4 11.0 45 105-152 56-100 (323)
48 PLN03158 methionine aminopepti 97.0 0.0029 6.3E-08 68.0 9.6 113 434-553 127-246 (396)
49 KOG2413 Xaa-Pro aminopeptidase 96.6 0.0035 7.6E-08 68.5 6.6 102 171-292 11-128 (606)
50 cd01086 MetAP1 Methionine Amin 96.5 0.021 4.6E-07 57.2 10.6 99 449-553 2-104 (238)
51 PRK05716 methionine aminopepti 95.9 0.051 1.1E-06 55.0 10.3 95 450-552 13-113 (252)
52 KOG2414 Putative Xaa-Pro amino 95.7 0.086 1.9E-06 55.3 10.7 65 2-70 68-141 (488)
53 PRK12896 methionine aminopepti 95.4 0.079 1.7E-06 53.7 9.5 106 439-552 5-118 (255)
54 cd01088 MetAP2 Methionine Amin 95.1 0.16 3.6E-06 52.6 10.8 96 450-552 3-98 (291)
55 COG0024 Map Methionine aminope 94.8 0.12 2.6E-06 51.9 8.5 83 451-542 14-105 (255)
56 PRK13607 proline dipeptidase; 94.1 0.15 3.2E-06 56.1 8.0 60 6-67 17-85 (443)
57 KOG2738 Putative methionine am 93.6 0.25 5.4E-06 49.8 7.5 118 425-554 97-226 (369)
58 TIGR00495 crvDNA_42K 42K curve 91.3 1.5 3.3E-05 47.4 10.7 99 451-554 22-130 (389)
59 PF00557 Peptidase_M24: Metall 90.5 1.6 3.5E-05 42.4 9.3 94 450-552 2-98 (207)
60 cd01087 Prolidase Prolidase. E 89.4 2.9 6.2E-05 41.9 10.4 94 450-552 3-97 (243)
61 PRK12897 methionine aminopepti 89.3 3.3 7.2E-05 41.7 10.8 96 451-552 13-112 (248)
62 cd01092 APP-like Similar to Pr 89.1 2.7 5.8E-05 40.8 9.6 96 450-553 3-99 (208)
63 TIGR00501 met_pdase_II methion 87.9 4.7 0.0001 41.9 10.9 95 450-553 7-103 (295)
64 PRK08671 methionine aminopepti 87.7 5.3 0.00012 41.3 11.3 95 450-553 4-100 (291)
65 PRK07281 methionine aminopepti 87.5 3.6 7.9E-05 42.5 9.8 82 451-536 13-101 (286)
66 cd01066 APP_MetAP A family inc 87.1 3.3 7.1E-05 39.7 8.9 96 450-553 3-98 (207)
67 TIGR00500 met_pdase_I methioni 86.9 4.9 0.00011 40.3 10.3 95 451-553 12-112 (247)
68 cd01090 Creatinase Creatine am 86.7 4.9 0.00011 40.0 10.0 95 450-552 3-104 (228)
69 cd01089 PA2G4-like Related to 86.3 6.5 0.00014 39.0 10.6 99 450-553 3-111 (228)
70 PRK12318 methionine aminopepti 84.9 6.3 0.00014 40.8 10.1 137 394-552 7-153 (291)
71 PF05195 AMP_N: Aminopeptidase 84.2 4 8.6E-05 37.0 7.3 86 166-261 4-117 (134)
72 PF05195 AMP_N: Aminopeptidase 83.5 0.98 2.1E-05 41.0 2.9 64 2-69 7-77 (134)
73 PTZ00053 methionine aminopepti 82.7 10 0.00023 41.7 10.9 97 447-552 153-261 (470)
74 KOG1189 Global transcriptional 80.4 18 0.00039 41.5 11.6 113 43-156 21-146 (960)
75 PF14826 FACT-Spt16_Nlob: FACT 77.1 5.8 0.00013 37.3 5.9 134 2-136 7-159 (163)
76 cd01085 APP X-Prolyl Aminopept 72.8 19 0.00041 35.7 8.7 95 451-552 6-106 (224)
77 KOG2775 Metallopeptidase [Gene 56.3 47 0.001 34.1 7.6 75 459-539 96-176 (397)
78 PF14980 TIP39: TIP39 peptide 51.6 8.5 0.00018 27.7 1.2 19 585-603 28-47 (51)
79 cd01091 CDC68-like Related to 51.1 1.2E+02 0.0027 30.3 10.0 80 365-446 140-234 (243)
80 PF04784 DUF547: Protein of un 40.7 26 0.00057 30.9 2.9 24 582-605 2-27 (117)
81 KOG2776 Metallopeptidase [Gene 29.2 2.3E+02 0.0049 30.1 7.8 97 451-555 24-133 (398)
82 TIGR03241 arg_catab_astB succi 28.3 1.8E+02 0.0039 31.2 7.0 138 156-341 259-405 (443)
83 PF14826 FACT-Spt16_Nlob: FACT 27.5 1.2E+02 0.0027 28.4 5.3 57 167-231 5-79 (163)
84 PF00486 Trans_reg_C: Transcri 24.5 1.4E+02 0.0029 23.4 4.4 57 114-184 6-62 (77)
85 PF08003 Methyltransf_9: Prote 22.5 6.1E+02 0.013 26.5 9.5 73 105-183 140-213 (315)
86 smart00862 Trans_reg_C Transcr 20.5 2.2E+02 0.0048 22.1 4.9 57 114-183 6-62 (78)
87 KOG3303 Predicted alpha-helica 20.5 1E+02 0.0022 29.3 3.1 24 587-610 109-132 (192)
No 1
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-134 Score=1060.74 Aligned_cols=589 Identities=52% Similarity=0.916 Sum_probs=561.8
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCCCcCccCcCccccccccccccccCceEEEEeCCceEEEEcchhHHHHhccccCcE
Q 006890 3 EILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEW 82 (627)
Q Consensus 3 ~Rl~~Lr~~m~~~~~~~Da~li~~~d~h~sey~~~~~~~~~ylTGFtgs~g~~vvt~~~a~l~tD~RY~~qA~~~~~~~~ 82 (627)
.++.++|+.|+..+ ++|||||+.|+|||||++++|+|+.|+|||+||+|++|||.++|.|||||||+.||.+|++++|
T Consensus 10 ~~~~~~~~~~~~~~--i~aYi~Ps~DaH~sEy~~~~D~R~~flsGFsGsag~Avit~~~a~lwtD~RY~~QA~~qld~~W 87 (606)
T KOG2413|consen 10 FELMRLRELMKSPP--IDAYILPSTDAHQSEYIADRDERRAFLSGFSGSAGTAVITEEEAALWTDGRYFQQAEQQLDSNW 87 (606)
T ss_pred HHHHHHHHHhcCCC--ceEEEccCCchhhhhhhcchhhhhhhhcccCCCcceEEEecCcceEEEccHHHHHHHhhhcccc
Confidence 36789999999987 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC-CCHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHHHHhcCCeEEecCcChhhHhhhcCCCCCCCccccccc
Q 006890 83 KLMRMLED-PAVDVWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQI 161 (627)
Q Consensus 83 ~~~~~~~~-~~~~~~l~~~l~~~~~vg~d~~~~s~~~~~~l~~~l~~~~~~l~~~~~~lid~lr~~k~~~e~~~i~~~~~ 161 (627)
++++++.+ +.+.+||...++.+++||+||+++|+..|.++.+.+..++.+++++..|+||.+|..||+.+.+++..++.
T Consensus 88 ~l~k~~~~~~~v~~wl~~~l~~~~~vG~Dp~Lis~~~~~~~~~~l~s~~~~Lv~i~~nLVD~iW~~rP~~~~~~v~~l~~ 167 (606)
T KOG2413|consen 88 TLMKMGEDVPTVEEWLAKVLPEGSRVGIDPTLISFDAWKQLEKSLTSKGLELVPIPGNLVDEIWGDRPERPGNPVIVLDL 167 (606)
T ss_pred eeeeccCCCccHHHHHHHhCCCccccccCcceechhHHHhHHHHHhhCCCeEeeccccchhhhhccCCccCCCceEEeec
Confidence 99999988 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHHHhhccCCcEEEEecCCccceEEccccCCCCCCcceeEEEEEECCceEEEEeCCCCCHHHHHhhh
Q 006890 162 EFAGSSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLK 241 (627)
Q Consensus 162 ~~~G~~~~~ri~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d~~~~P~~~a~~lv~~~~~~L~v~~~~~~~~~~~~l~ 241 (627)
+|+|.++..|+..||..|+..+++++|++++|+|+||+|+||+|+||||||++|++|+.+++.||+++.++......++.
T Consensus 168 ~~~G~~~~~Kv~~LR~~l~~~~~~a~Vvs~LdeIaWllNLRGsDipynPv~~sY~~it~dei~lfvd~~k~~~~~~~~~~ 247 (606)
T KOG2413|consen 168 EFAGLSVDDKVDNLRKKLKEKKCDAFVVTALDEIAWLLNLRGSDIPYNPVFYSYAIITMDEIFLFVDNSKLSDESKKHLR 247 (606)
T ss_pred cccCcchhHHHHHHHHHHhhcCCcEEehhhHHHHHHHHhcccCcCCCCchhhhhhhhhhhhhheeecCcccCchhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hCCeEEeeCCchhHHHHHHhhccCCCCCCCCCCCEEEEcCCCCcHHHHhhcCCCeEEecCCccchhhhcCCHHHHHHHHH
Q 006890 242 ESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLNSDKVLLQQSPLALAKAIKNPVELDGLKK 321 (627)
Q Consensus 242 ~~~v~v~~y~~~~~~~~~~~~~~l~~~~~~~~~~~I~iD~~~~~~~~~~~l~~~~~~~~~~~i~~~r~iK~~~Ei~~~r~ 321 (627)
..++++.+|..+...+..++++ . ...++++.+ .+++.+...+++...+...+||..+|++||+.|+++||.
T Consensus 248 ~~~v~i~pY~~i~~~i~~~~~~-~-------~~~~i~ia~-~~~~~i~~~i~~~~~~~~~Spi~~~kAiKN~~E~~gmr~ 318 (606)
T KOG2413|consen 248 EDGVEIRPYDQIWSDIKNWASA-F-------ADKKIWISP-ETNYGIGELIGEDHSMIDPSPISRAKAIKNDDELKGMRN 318 (606)
T ss_pred hCceeeeeHHHHHHHHHHHhcc-c-------CceeEeecc-cceeeecccccccccccccCHHHHHHHhcChHHhhhhhh
Confidence 8999999999999988888753 1 245778877 678888888888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCccccc-CC
Q 006890 322 AHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSV-GP 400 (627)
Q Consensus 322 A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i~~~-G~ 400 (627)
|+..++.|+++++.|++..+.. ...+||.+++.+++++|.++.+|.|+||+||+++ |+
T Consensus 319 shirD~~Alve~~~wle~~~~~---------------------g~~itE~~~A~kle~fR~~~~~fmglSFeTIS~s~G~ 377 (606)
T KOG2413|consen 319 SHIRDGAALVEYFAWLEKELHK---------------------GYTITEYDAADKLEEFRSRQDHFMGLSFETISSSVGP 377 (606)
T ss_pred cchhhHHHHHHHHHHHhhhhhc---------------------CcccchhhHHHHHHHHHHhhccccCcCcceeeccCCC
Confidence 9999999999999999987743 2349999999999999999999999999999977 99
Q ss_pred CcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcccchHH
Q 006890 401 NAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLD 480 (627)
Q Consensus 401 n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~ 480 (627)
|+|++||.|.+++|+.+.+..+++||+|+||..||||+|||+++|+||++++++||.|+++|+++.+++||+|+.++.+|
T Consensus 378 NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g~~lD 457 (606)
T KOG2413|consen 378 NGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKGSVLD 457 (606)
T ss_pred CceeeecCCCccccceecCceEEEEccCcccccCccceeEEEecCCCCHHHHHHHHHHHHhhhHhhhcccCCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcccccccccccCccccCCCcCCCCC--CCCcccCCcEEeeCceeeecCccEEEEeEeeEEecCCcc
Q 006890 481 ILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKP--RNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTK 558 (627)
Q Consensus 481 ~~a~~~l~~~G~~~~h~~GHgvG~~l~vhE~P~~~~~~~--~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~~~g~~ 558 (627)
.+||..||+.|++|.|+||||||+||+|||+|..++.++ +..+|++|||+|+|||+|.+|.|||||||+++|.+.+.+
T Consensus 458 ~laR~~LW~~gLDy~HgTGHGVG~fLnVhE~P~~is~r~~~~~~~l~ag~~~s~EPGYY~dg~fGIRienv~~vvd~~~~ 537 (606)
T KOG2413|consen 458 ALARSALWKAGLDYGHGTGHGVGSFLNVHEGPIGIGYRPYSSNFPLQAGMVFSIEPGYYKDGEFGIRIENVVEVVDAGTK 537 (606)
T ss_pred HHHHHHHHhhccccCCCCCcccccceEeccCCceeeeeecCCCchhcCceEeccCCcccccCcceEEEeeEEEEEecccc
Confidence 999999999999999999999999999999999998875 678899999999999999999999999999999999988
Q ss_pred cccCCcceeeeecccccccccccccccCCCHHHHHHHHHHHHHHHHHHCCCCcH----HHHHHHHHccccC
Q 006890 559 FNFGDKGYLSFEHITWAPYQIKMINLKSLTPEEIDWLNAYHSKCRDILAPYLDE----AELAWLKKATEPA 625 (627)
Q Consensus 559 ~~~~~~~~~~fe~lT~~p~~~~~i~~~~l~~~e~~~ln~y~~~~~~~~~~~l~~----~~~~wl~~~~~~~ 625 (627)
++| +.||+||+||++|+++++||++|||++|+.|||.||++|+++|+|+|++ .+++||+++|+||
T Consensus 538 ~~~--~~~L~fe~lT~vP~q~klid~~LLs~eE~~~LN~Yh~~v~~~i~~~L~~~~~~~~~~WL~~~t~Pi 606 (606)
T KOG2413|consen 538 HNF--RGFLTFEPLTLVPYQTKLIDKSLLSEEEINWLNEYHAKVRSKIGPELQKEGRMEEYKWLINATQPI 606 (606)
T ss_pred ccc--cceeeeccceecceecccCChhhCCHHHHHHHHHHHHHHHHhccHHHhhccchhHHHHHHhhccCC
Confidence 888 7899999999999999999999999999999999999999999999985 5799999999997
No 2
>PRK09795 aminopeptidase; Provisional
Probab=100.00 E-value=7.8e-63 Score=525.50 Aligned_cols=346 Identities=25% Similarity=0.386 Sum_probs=292.8
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCcCccCcCccccccccccccccCceEEEEeCCceEEEEcchhHHHHhccccCc
Q 006890 2 AEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGE 81 (627)
Q Consensus 2 ~~Rl~~Lr~~m~~~~~~~Da~li~~~d~h~sey~~~~~~~~~ylTGFtgs~g~~vvt~~~a~l~tD~RY~~qA~~~~~~~ 81 (627)
++||++||++|++++ +||+||+++ .|++|||||+|++|+++|++++++||||+||++||++++++
T Consensus 1 ~~Rl~~l~~~m~~~~--lDa~lI~~~------------~n~~YLTGf~g~~g~llIt~~~~~l~td~ry~~qa~~~~~~- 65 (361)
T PRK09795 1 MTLLASLRDWLKAQQ--LDAVLLSSR------------QNKQPHLGISTGSGYVVISRESAHILVDSRYYADVEARAQG- 65 (361)
T ss_pred CcHHHHHHHHHHHCC--CCEEEECCc------------cccccccCccCCCeEEEEECCCCEEEcCcchHHHHHhhCCC-
Confidence 369999999999987 999999999 79999999999999999999999999999999999888764
Q ss_pred EEEEEcCCCCCHHHHHHhhCCCC--CEEEEcCCCCCHHHHHHHHHHHHhcCCeEEecCcChhhHhhhcCCCCCCCccccc
Q 006890 82 WKLMRMLEDPAVDVWMANNLPND--AAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQ 159 (627)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~--~~vg~d~~~~s~~~~~~l~~~l~~~~~~l~~~~~~lid~lr~~k~~~e~~~i~~~ 159 (627)
+++......+.+.+|+.+.++.. ++||||+..+++..++.|++.+ . .
T Consensus 66 ~~v~~~~~~~~~~~~L~~~L~~~~~~~Ig~e~~~~s~~~~~~L~~~l-----~---~----------------------- 114 (361)
T PRK09795 66 YQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSEL-----N---A----------------------- 114 (361)
T ss_pred ceEEEecCCccHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhc-----C---c-----------------------
Confidence 23332323334556777666532 5788888777765554332210 0 0
Q ss_pred cccccCCcHHHHHHHHHHHhhccCCcEEEEecCCccceEEccccCCCCCCcceeEEEEEECCceEEEEeCCCCCHHHHHh
Q 006890 160 QIEFAGSSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISF 239 (627)
Q Consensus 160 ~~~~~G~~~~~ri~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d~~~~P~~~a~~lv~~~~~~L~v~~~~~~~~~~~~ 239 (627)
T Consensus 115 -------------------------------------------------------------------------------- 114 (361)
T PRK09795 115 -------------------------------------------------------------------------------- 114 (361)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhCCeEEeeCCchhHHHHHHhhccCCCCCCCCCCCEEEEcCCCCcHHHHhhcCCCeEEecCCccchhhhcCCHHHHHHH
Q 006890 240 LKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLNSDKVLLQQSPLALAKAIKNPVELDGL 319 (627)
Q Consensus 240 l~~~~v~v~~y~~~~~~~~~~~~~~l~~~~~~~~~~~I~iD~~~~~~~~~~~l~~~~~~~~~~~i~~~r~iK~~~Ei~~~ 319 (627)
++++. .+..+|+||||+||+.|
T Consensus 115 --------------------------------------------------------~~~~~--~~~~lR~iKs~~Ei~~~ 136 (361)
T PRK09795 115 --------------------------------------------------------KLVSA--TPDVLRQIKTPEEVEKI 136 (361)
T ss_pred --------------------------------------------------------ccccc--cHHHHhcCCCHHHHHHH
Confidence 00000 13568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCcccccC
Q 006890 320 KKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVG 399 (627)
Q Consensus 320 r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i~~~G 399 (627)
|+|+++++.++..+...+ ++|+||.|+++.++..+. ..|....+|++|+++|
T Consensus 137 r~a~~i~~~~~~~~~~~i---------------------------~~G~tE~e~~~~~~~~~~-~~G~~~~~f~~iv~sG 188 (361)
T PRK09795 137 RLACGIADRGAEHIRRFI---------------------------QAGMSEREIAAELEWFMR-QQGAEKASFDTIVASG 188 (361)
T ss_pred HHHHHHHHHHHHHHHHhc---------------------------cCCCcHHHHHHHHHHHHH-HCCCCcCCCCeEEEEe
Confidence 999999999998877664 799999999999988764 5677788999999999
Q ss_pred CCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCC--CCHH---HHHHHHHHHHHHHHHHhccCCCCc
Q 006890 400 PNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGK--PSAH---EKACYTAVLKGHIALGNAVFPNGT 474 (627)
Q Consensus 400 ~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~--p~~e---~~~~y~~v~~~~~~~~~~~~p~G~ 474 (627)
+|++.||+.|++ ++|++||+|++|+|+.|+||++|+||||++|. ++++ ++++|+.+++++.+++++++| |+
T Consensus 189 ~~~~~ph~~~~~---~~l~~gd~v~~d~g~~~~gY~sd~tRt~~~g~~~~~~~~~~~~~~~~~v~~a~~~~~~~~rp-G~ 264 (361)
T PRK09795 189 WRGALPHGKASD---KIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRP-GV 264 (361)
T ss_pred ccccccCCCCCC---ceecCCCEEEEEeccccCCEeecceEEEEeCCcCCchhHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 999999999976 89999999999999999999999999999963 2333 789999999999999999998 99
Q ss_pred ccchHHHHHHHHHHHcCC--CCcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEE
Q 006890 475 CGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 475 ~~~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V 552 (627)
++++||.++++++++.|+ .|.|++||||| |++||.|.+. .+ ++.+|+|||||++|||+|.++.+|+||||+|+|
T Consensus 265 ~~~~v~~~~~~~~~~~g~~~~~~h~~GHgiG--l~~he~p~i~-~~-~~~~l~~gmv~~iEpgiy~~~~~gvriEd~v~v 340 (361)
T PRK09795 265 RCQQVDDAARRVITEAGYGDYFGHNTGHAIG--IEVHEDPRFS-PR-DTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLV 340 (361)
T ss_pred cHHHHHHHHHHHHHHcCCCccCCCCCCccCC--ccccCCCCcC-CC-CCCCcCCCCEEEECCEEEeCCCCEEEEeeEEEE
Confidence 999999999999999999 47899999999 9999999864 33 789999999999999999999999999999999
Q ss_pred ecCCcccccCCcceeeeeccccccccc
Q 006890 553 TDANTKFNFGDKGYLSFEHITWAPYQI 579 (627)
Q Consensus 553 ~~~g~~~~~~~~~~~~fe~lT~~p~~~ 579 (627)
|++|+ |+||..|.++
T Consensus 341 t~~G~------------e~Lt~~~~~l 355 (361)
T PRK09795 341 TPQGA------------EVLYAMPKTV 355 (361)
T ss_pred CCCCc------------EeCcCCCceE
Confidence 99998 8999888755
No 3
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-60 Score=510.20 Aligned_cols=361 Identities=28% Similarity=0.388 Sum_probs=295.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCcEEEEecCCccceEEccccCCCCCCccee-EEEEEE-CCceEEEEeCCCCCHHHHHhh
Q 006890 163 FAGSSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVH-AFAIVT-TNAAFLYVDKRKVSSEVISFL 240 (627)
Q Consensus 163 ~~G~~~~~ri~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d~~~~P~~~-a~~lv~-~~~~~L~v~~~~~~~~~~~~l 240 (627)
++......|+.+++..|++.+.|++++++..|+.|+||+... +... ..++++ .++++|+++..+.........
T Consensus 5 ~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~n~~yltg~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 79 (384)
T COG0006 5 FADEEYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAF-----GFERLQALLVPAEGEPVLFVRGRDEEAAKETSW 79 (384)
T ss_pred cchHHHHHHHHHHHHHHHHcCCcEEEecCCCceEEEeCCCCC-----cccceEEEEEcCCCceEEEEcchhHHHHHhhcc
Confidence 445567789999999999999999999999999999998841 1111 233444 445899999887544322211
Q ss_pred hhCCeEEeeCCchhH------HHHHHhhccCCCCCCCCCCCEEEEcCCC--CcHHHHhhcC----CCeEEecCCccchhh
Q 006890 241 KESGVEVRDYDAVSS------DVVLLQSNQLNPPADVQGSDLIWADPNS--CSYALYSKLN----SDKVLLQQSPLALAK 308 (627)
Q Consensus 241 ~~~~v~v~~y~~~~~------~~~~~~~~~l~~~~~~~~~~~I~iD~~~--~~~~~~~~l~----~~~~~~~~~~i~~~r 308 (627)
.....+..|.+-.+ .+..+.... . .....++++... .+...+..+. ..++++.++++..+|
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~lR 152 (384)
T COG0006 80 -IKLENVEVYEDDEDPAAPLDLLGALLEEL-G-----LAGKRIGIESASIFLTLAAFERLQAALPRAELVDASDLVDRLR 152 (384)
T ss_pred -cccCceEEEecCCccccHHHHHHHHHHhc-c-----ccccceEEEeccCccCHHHHHHHHhhCCCCEEeccHHHHHHHH
Confidence 11012333332222 222222111 0 135678888764 4555554443 347899999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCC
Q 006890 309 AIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFR 388 (627)
Q Consensus 309 ~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~ 388 (627)
+|||+.||+.||+|+.+++.|+.++++++ ++|+||.|++++++..+. ..|..
T Consensus 153 ~iKs~~EI~~ir~A~~i~~~a~~~~~~~~---------------------------~~g~tE~ev~a~l~~~~~-~~G~~ 204 (384)
T COG0006 153 LIKSPAEIAKIRKAAEIADAALEAALEAI---------------------------RPGMTEAEIAAELEYALR-KGGAE 204 (384)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------cCCCcHHHHHHHHHHHHH-HcCCC
Confidence 99999999999999999999999999986 689999999999999874 45667
Q ss_pred CCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Q 006890 389 GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNA 468 (627)
Q Consensus 389 ~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~ 468 (627)
++||.+|+++|+|+++|||.|++ +.+++||+|++|+|++|.||+||+||||++|+|+++|+++|+.|++||.+++++
T Consensus 205 ~~sf~~iv~~G~n~a~pH~~~~~---~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~~~~~~~iy~~V~~aq~aa~~~ 281 (384)
T COG0006 205 GPSFDTIVASGENAALPHYTPSD---RKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAA 281 (384)
T ss_pred ccCcCcEEeccccccCcCCCCCc---ccccCCCEEEEEeeeEECCccccceeEEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999987 888999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchHHHHHHHHHHHcCC--CCcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeeecCccEEEE
Q 006890 469 VFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRL 546 (627)
Q Consensus 469 ~~p~G~~~~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~Gvri 546 (627)
+|| |+++.+||.++|+++++.|+ +|.|++|||||+++++||.|..+..+ +..+|+||||||+|||+|.+|.+||||
T Consensus 282 ~rp-G~~~~~vd~~ar~~i~~~g~~~~~~h~~GHgvG~~l~vhE~p~~~~~~-~~~~L~~GMv~t~Epg~y~~g~~GirI 359 (384)
T COG0006 282 IRP-GVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYLSPG-SDTTLEPGMVFSIEPGIYIPGGGGVRI 359 (384)
T ss_pred hCC-CCcHHHHHHHHHHHHHhcCCcccccCCccccCCCCcccCcCccccCCC-CCccccCCcEEEeccccccCCCceEEE
Confidence 998 99999999999999999665 89999999999999999999633433 789999999999999999999999999
Q ss_pred eEeeEEecCCcccccCCcceeeeecccccccccc
Q 006890 547 ENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIK 580 (627)
Q Consensus 547 Ed~v~V~~~g~~~~~~~~~~~~fe~lT~~p~~~~ 580 (627)
||+|+||++|+ |+||..|.+..
T Consensus 360 Ed~vlVte~G~------------e~LT~~~~~~~ 381 (384)
T COG0006 360 EDTVLVTEDGF------------EVLTRVPKELL 381 (384)
T ss_pred EEEEEEcCCCc------------eecccCCccee
Confidence 99999999985 99996666543
No 4
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=100.00 E-value=1.3e-56 Score=481.45 Aligned_cols=364 Identities=16% Similarity=0.197 Sum_probs=288.9
Q ss_pred cccCCcHHHHHHHHHHHhhccCCcEEEEecCCccceEEccccCCCCCCcceeEEEEEE-CCceEEEEeCCCCCHHHHH-h
Q 006890 162 EFAGSSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVT-TNAAFLYVDKRKVSSEVIS-F 239 (627)
Q Consensus 162 ~~~G~~~~~ri~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d~~~~P~~~a~~lv~-~~~~~L~v~~~~~~~~~~~-~ 239 (627)
.|+-.++.+|++++|+.|+++++|++++++++|+.||||+.+.. +. ...+++|+ .+++.++++..+....... +
T Consensus 5 ~f~~~E~~~Rl~rl~~~m~~~~lDalli~~~~ni~YltG~~~~~--~~--~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~ 80 (391)
T TIGR02993 5 FFTRAEYQARLDKTRAAMEARGIDLLIVTDPSNMAWLTGYDGWS--FY--VHQCVLLPPEGEPIWYGRGQDANGAKRTAF 80 (391)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEcCcccceeeccCCCCc--eE--EEEEEEEcCCCceEEEehhhhhhhHhheee
Confidence 46667899999999999999999999999999999999998642 11 12456666 5567777765543322111 1
Q ss_pred hhhCCeEEeeCCch------hHHHHHHhhccCCCCCCCCCCCEEEEcCCC--CcHHHHhhc----CCCeEEecCCccchh
Q 006890 240 LKESGVEVRDYDAV------SSDVVLLQSNQLNPPADVQGSDLIWADPNS--CSYALYSKL----NSDKVLLQQSPLALA 307 (627)
Q Consensus 240 l~~~~v~v~~y~~~------~~~~~~~~~~~l~~~~~~~~~~~I~iD~~~--~~~~~~~~l----~~~~~~~~~~~i~~~ 307 (627)
+ ...++..|.+. .+....++ +.+..++ ....+||+|.+. +++..+..| +..++++++..+..+
T Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~g--~~~~~ig~e~~~~~~~~~~~~~l~~~l~~~~~~d~~~~~~~l 155 (391)
T TIGR02993 81 M--DHDNIVGYPDHYVQSTERHPMDYLS-EILQDRG--WDSLTIGVEMDNYYFSAAAFASLQKHLPNARFVDATALVNWQ 155 (391)
T ss_pred c--cccceeecccccccCCCCCHHHHHH-HHHHhcC--CCCCcEEEecCCCccCHHHHHHHHHhCCCCEEEehHHHHHHH
Confidence 1 11234444432 11222222 1222211 134579999774 677766655 446899999999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHh---h
Q 006890 308 KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRAS---K 384 (627)
Q Consensus 308 r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~---~ 384 (627)
|+|||++||++||+|+++++.++.++.+.+ ++|+||.|+++.+...... .
T Consensus 156 R~iKs~~EI~~lr~A~~i~~~~~~~~~~~i---------------------------~pG~tE~ei~~~~~~~~~~~~~~ 208 (391)
T TIGR02993 156 RAVKSETEISYMRVAARIVEKMHQRIFERI---------------------------EPGMRKCDLVADIYDAGIRGVDG 208 (391)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------cCCCCHHHHHHHHHHhhhhcccC
Confidence 999999999999999999999999887765 7999999999998653221 1
Q ss_pred cCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHH
Q 006890 385 EHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIA 464 (627)
Q Consensus 385 ~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~ 464 (627)
.|...++|.+|++||+|++.+|+.|++ ++|++||++++|+|+.|+||++|+||||++|+|+++++++|+.+++++.+
T Consensus 209 ~g~~~~~~~~iv~sG~~~a~pH~~~~~---~~l~~gd~v~iD~g~~~~GY~sD~tRT~~vG~p~~~~~~~~~~~~~a~~~ 285 (391)
T TIGR02993 209 FGGDYPAIVPLLPSGADASAPHLTWDD---SPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEA 285 (391)
T ss_pred cCCCcCCcccccccCccccCCCCCCCC---CcccCCCEEEEEeeeecccCccceeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 233356778899999999999999876 89999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcccchHHHHHHHHHHHcCCCCcccccccccccCccccCC----CcCCCCCCCCcccCCcEEeeCceeeecC
Q 006890 465 LGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGP----QSISFKPRNVPIHASMTATDEPGYYEDG 540 (627)
Q Consensus 465 ~~~~~~p~G~~~~~l~~~a~~~l~~~G~~~~h~~GHgvG~~l~vhE~P----~~~~~~~~~~~l~~Gmv~siEPg~y~~~ 540 (627)
++++++| |+++++|+.++++++.+.|+...|++||||| +++|+.+ ..++.+ ++.+|++||||++|||+|.++
T Consensus 286 ~i~~ikp-G~~~~dv~~~~~~~~~~~G~~~~h~~GhgiG--l~~~~~~~e~~~~l~~~-~~~~L~~GMv~tvEpgiy~~~ 361 (391)
T TIGR02993 286 GLEAAKP-GNTCEDIANAFFAVLKKYGIHKDSRTGYPIG--LSYPPDWGERTMSLRPG-DNTVLKPGMTFHFMTGLWMED 361 (391)
T ss_pred HHHHcCC-CCcHHHHHHHHHHHHHHcCCccCCCceeeec--cCcCCCCCCccccccCC-CCceecCCCEEEEcceeEeCC
Confidence 9999998 9999999999999999999977899999999 9887432 223333 678999999999999999987
Q ss_pred ccEEEEeEeeEEecCCcccccCCcceeeeeccccccccccc
Q 006890 541 NFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIKM 581 (627)
Q Consensus 541 ~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~~p~~~~~ 581 (627)
+|+||||+|+||++|+ |.||..|.++..
T Consensus 362 -~Gvried~v~VT~~G~------------e~Lt~~p~~l~~ 389 (391)
T TIGR02993 362 -WGLEITESILITETGV------------ECLSSVPRKLFV 389 (391)
T ss_pred -CCeEEeeEEEECCCcc------------eecccCCcccEe
Confidence 6999999999999998 899999977643
No 5
>PRK14575 putative peptidase; Provisional
Probab=100.00 E-value=3e-55 Score=472.40 Aligned_cols=359 Identities=19% Similarity=0.207 Sum_probs=285.7
Q ss_pred HHHHHHHHhhccCCcEEEEecCCccceEEccccCC-CCCCcceeEEEEEECC-c-eE-EEEeCCCCCHHHHHhhhhCCeE
Q 006890 171 KLKELREKLTNEKARGIIITTLDEVAWLYNIRGTD-VPYCPVVHAFAIVTTN-A-AF-LYVDKRKVSSEVISFLKESGVE 246 (627)
Q Consensus 171 ri~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d-~~~~P~~~a~~lv~~~-~-~~-L~v~~~~~~~~~~~~l~~~~v~ 246 (627)
-++++|+.|+++|+|++++++++|++||||+.+.. ..++|...+.++|+.+ + +. ++++..+......+......-+
T Consensus 12 ~~~rlr~~m~~~glD~lvl~~p~n~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~i~p~~E~~~~~~~~~~~~~~~ 91 (406)
T PRK14575 12 VSRKLRTIMERDNIDAVIVTTCDNFYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLIIMNEFEAASLTLDMPNAELKT 91 (406)
T ss_pred HHHHHHHHHHHcCCCEEeecCcchheeecccccccceecccCCceEEEEEcCCCCCceEEechhhhhhhccccccccccc
Confidence 37899999999999999999999999999998754 2344544466788755 3 55 5556555443221111000001
Q ss_pred EeeCCc---hh------------------HHHH-HHhhccCCCCCCCCCCCEEEEcCCCCcHHHHhhc----CCCeEEec
Q 006890 247 VRDYDA---VS------------------SDVV-LLQSNQLNPPADVQGSDLIWADPNSCSYALYSKL----NSDKVLLQ 300 (627)
Q Consensus 247 v~~y~~---~~------------------~~~~-~~~~~~l~~~~~~~~~~~I~iD~~~~~~~~~~~l----~~~~~~~~ 300 (627)
+..|.+ .+ +.+. .++ ..+.+++ ..+++||+|.+..+...++.| +..+++++
T Consensus 92 ~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~--~~~~~igve~~~~~~~~~~~l~~~lp~~~~~d~ 168 (406)
T PRK14575 92 FPVWVDVDDPFNMRDSANNNKERPIGPPIESVCNILK-DALNDAR--VLNKKIAIDLNIMSNGGKRVIDAVMPNVDFVDS 168 (406)
T ss_pred CCceEeeeccccccchhhhhhcCCCCCCHHHHHHHHH-HHHHhcC--CcCCEEEEccCCCCHHHHHHHHHhCCCCeEEEc
Confidence 223322 11 1100 111 1221111 246799999888887777655 45679999
Q ss_pred CCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHH
Q 006890 301 QSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESF 380 (627)
Q Consensus 301 ~~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~ 380 (627)
+..+..+|+|||+.||+.||+|++++++++.++++.+ ++|+||.|+++.+...
T Consensus 169 ~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~i---------------------------~pG~tE~elaa~~~~~ 221 (406)
T PRK14575 169 SSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLI---------------------------RVGCTSAELTAAYKAA 221 (406)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------cCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999998887764 7999999999999776
Q ss_pred HHhhcCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHH
Q 006890 381 RASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLK 460 (627)
Q Consensus 381 ~~~~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~ 460 (627)
... .+....++.+++++|++ +.+|+.|++ +++++||+|++|+|+.|+||++|+||||++|+||++|+++|+.+++
T Consensus 222 ~~~-~g~~~~~~~~~v~~G~~-~~~h~~~~~---~~l~~Gd~v~iD~g~~~~GY~sditRT~~vG~~~~~~~~~~~~~~~ 296 (406)
T PRK14575 222 VMS-KSETHFSRFHLISVGAD-FSPKLIPSN---TKACSGDLIKFDCGVDVDGYGADIARTFVVGEPPEITRKIYQTIRT 296 (406)
T ss_pred HHH-cCCCcCCcCceEEECCC-cccCCCCCC---CcCCCCCEEEEEeceEECCEeeeeEEEEECCCCCHHHHHHHHHHHH
Confidence 533 33333444478889988 568998875 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcccchHHHHHHHHHHHcCC--CCcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeee
Q 006890 461 GHIALGNAVFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYE 538 (627)
Q Consensus 461 ~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~ 538 (627)
++.+++++++| |+++++|+.++++++++.|+ .+.|++|||||+++++||.|.+.. + ++.+|+|||||++|||+|.
T Consensus 297 a~~~~~~~~rp-G~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~lg~~e~P~i~~-~-~~~~Le~GMv~tiEpgiy~ 373 (406)
T PRK14575 297 GHEHMLSMVAP-GVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVST-H-ATESFTSGMVLSLETPYYG 373 (406)
T ss_pred HHHHHHHHcCC-CCcHHHHHHHHHHHHHHcCCccccCCCCCCcccCCCCCccCCCCCC-C-CCCCcCCCCEEEECCeeec
Confidence 99999999998 99999999999999999999 367999999997789999998754 3 6789999999999999999
Q ss_pred cCccEEEEeEeeEEecCCcccccCCcceeeeeccccccccc
Q 006890 539 DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQI 579 (627)
Q Consensus 539 ~~~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~~p~~~ 579 (627)
++.+|+|+||+|+||++|+ |.||..|.++
T Consensus 374 ~g~gGvriEDtvlVT~~G~------------e~LT~~p~~l 402 (406)
T PRK14575 374 YNLGSIMIEDMILINKEGI------------EFLSKLPRDL 402 (406)
T ss_pred CCCcEEEEEeEEEEcCCCc------------ccCCCCCccc
Confidence 9999999999999999997 8999888654
No 6
>PRK14576 putative endopeptidase; Provisional
Probab=100.00 E-value=1.1e-53 Score=460.26 Aligned_cols=358 Identities=19% Similarity=0.182 Sum_probs=281.7
Q ss_pred HHHHHHHhhccCCcEEEEecCCccceEEccccCCCC-CCcceeEEEEEECC--ce-EEEEeCCCCCHHHHHhhhhCCeEE
Q 006890 172 LKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVP-YCPVVHAFAIVTTN--AA-FLYVDKRKVSSEVISFLKESGVEV 247 (627)
Q Consensus 172 i~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d~~-~~P~~~a~~lv~~~--~~-~L~v~~~~~~~~~~~~l~~~~v~v 247 (627)
-+++|++|+++++|++++++++||+||||+.+..+. +.+....+++++.+ ++ .++++..+............--++
T Consensus 13 ~~r~r~~M~~~gldalll~~p~ni~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~i~~~~e~~~~~~~~~~~~~~~~ 92 (405)
T PRK14576 13 SRKARVVMEREGIDALVVTVCDNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEFEAASTHFDMPNSVLKTF 92 (405)
T ss_pred HHHHHHHHHHcCCCEEEeccccceeeeccccccceeeeccCCeEEEEecCCCCCCcEEEechhhhhhhhccccccccccC
Confidence 578999999999999999999999999999865322 33434455555544 35 556655543332100000000012
Q ss_pred eeCCch---h-----------------HHH-HHHhhccCCCCCCCCCCCEEEEcCCCCcHHHHhh----cCCCeEEecCC
Q 006890 248 RDYDAV---S-----------------SDV-VLLQSNQLNPPADVQGSDLIWADPNSCSYALYSK----LNSDKVLLQQS 302 (627)
Q Consensus 248 ~~y~~~---~-----------------~~~-~~~~~~~l~~~~~~~~~~~I~iD~~~~~~~~~~~----l~~~~~~~~~~ 302 (627)
..|.+. . +.+ ..+ .+.+.+++ ..+.+|++|.+.++...+.. ++..++++++.
T Consensus 93 ~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g--~~~~rigve~~~~~~~~~~~l~~~~~~~~~vd~~~ 169 (405)
T PRK14576 93 PVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLV-KNALEDAG--VLDKTIAIELQAMSNGGKGVLDKVAPGLKLVDSTA 169 (405)
T ss_pred CceEeecCCcccchhhhccccCCCCcHHHHHHHH-HHHHHHhC--CCCCEEEEccCCCCHHHHHHHHhhCCCCeEEEcHH
Confidence 222211 0 111 111 12232222 24679999988777765544 45568999999
Q ss_pred ccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHH
Q 006890 303 PLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRA 382 (627)
Q Consensus 303 ~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~ 382 (627)
.+..+|+|||+.||+.||+|+++++.++..+++.+ ++|+||.|+++.++..+.
T Consensus 170 ~l~~lR~iKs~~EI~~~r~A~~i~~~~~~~~~~~i---------------------------~pG~tE~elaa~~~~~~~ 222 (405)
T PRK14576 170 LFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKI---------------------------RVGCTAAELTAAFKAAVM 222 (405)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------cCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887764 799999999999987664
Q ss_pred hhcCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHH
Q 006890 383 SKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGH 462 (627)
Q Consensus 383 ~~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~ 462 (627)
. .|....++.+++++|+| +.+|+.|++ +.+++||+|++|+|+.|+||++|+||||++|+|+++|+++|+.+++++
T Consensus 223 ~-~g~~~~~~~~~v~~G~~-~~~h~~~~~---~~l~~Gd~v~~d~g~~~~GY~sd~tRT~~~G~p~~~~~~~~~~~~~a~ 297 (405)
T PRK14576 223 S-FPETNFSRFNLISVGDN-FSPKIIADT---TPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGH 297 (405)
T ss_pred H-cCCCcCCCCCEEEECCc-ccCCCCCCC---cccCCCCEEEEEeceeECCEEeeeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 3 33233444589999999 568998876 899999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcccchHHHHHHHHHHHcCC--CCcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeeecC
Q 006890 463 IALGNAVFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDG 540 (627)
Q Consensus 463 ~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~ 540 (627)
.+++++++| |+++++|+.++++.+.+.|+ .+.|++|||||+++.+||.|.+. .+ ++.+|++||||++|||+|.+|
T Consensus 298 ~a~~~~~rP-G~~~~dv~~a~~~~~~~~G~~~~~~~~~GHgiG~~l~~~e~P~i~-~~-~~~~Le~GMv~~vEp~~y~~g 374 (405)
T PRK14576 298 EHMLSMVAP-GVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVPFVS-TQ-ATETFCPGMVLSLETPYYGIG 374 (405)
T ss_pred HHHHHHcCC-CCcHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcCcCCCcC-CC-CCCccCCCCEEEECCceeecC
Confidence 999999998 99999999999999999998 35689999999888999999853 33 678999999999999999999
Q ss_pred ccEEEEeEeeEEecCCcccccCCcceeeeeccccccccc
Q 006890 541 NFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQI 579 (627)
Q Consensus 541 ~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~~p~~~ 579 (627)
.+|+|+||+|+||++|+ |.||..|.++
T Consensus 375 ~ggvriEDtvlVTe~G~------------e~LT~~p~~l 401 (405)
T PRK14576 375 VGSIMLEDMILITDSGF------------EFLSKLDRDL 401 (405)
T ss_pred CCEEEEeeEEEECCCcc------------ccCCCCCccc
Confidence 99999999999999998 8999988754
No 7
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00 E-value=3.7e-50 Score=435.79 Aligned_cols=349 Identities=21% Similarity=0.284 Sum_probs=269.1
Q ss_pred CcHHHHHHHHHHHhhccCCcEEEEecCC----------------ccceEEccccCCCCCCcceeEEEEEEC-C----ceE
Q 006890 166 SSVVEKLKELREKLTNEKARGIIITTLD----------------EVAWLYNIRGTDVPYCPVVHAFAIVTT-N----AAF 224 (627)
Q Consensus 166 ~~~~~ri~~lr~~m~~~~~d~lll~~~d----------------ni~wLtg~rg~d~~~~P~~~a~~lv~~-~----~~~ 224 (627)
.++..|.++|.+.|... ..+++.+.+ |+.||||+.-.+ +.+++.+ + +.+
T Consensus 4 ~~~~~rR~~l~~~~~~~--~~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~ep~--------~~lv~~~~~~~~~~~~ 73 (438)
T PRK10879 4 QEFQRRRQALLAKMQPG--SAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPE--------AVLVLIKSDDTHNHSV 73 (438)
T ss_pred HHHHHHHHHHHhhCCCC--cEEEEeCCCccccCCCCCCCccCCCceeeeeCCCCCC--------eEEEEecCCCCCCeEE
Confidence 46788999999998652 244544432 689999876433 5555532 2 368
Q ss_pred EEEeCCCCCHHH--------HHhhhhCCeE-EeeCCchhHHHHHHhhccCCCCCCCCCCCEEEEcCCCC------cHHHH
Q 006890 225 LYVDKRKVSSEV--------ISFLKESGVE-VRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSC------SYALY 289 (627)
Q Consensus 225 L~v~~~~~~~~~--------~~~l~~~~v~-v~~y~~~~~~~~~~~~~~l~~~~~~~~~~~I~iD~~~~------~~~~~ 289 (627)
||+++.....++ ++.....|++ +.+++++.+.+..+..+ ...+..+.+.. .....
T Consensus 74 Lf~~~~d~~~e~W~G~~~~~~~a~~~~g~d~v~~~~~l~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
T PRK10879 74 LFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALPFSEINQQLYQLLNG----------LDVVYHAQGEYAYADEIVFSAL 143 (438)
T ss_pred EEeCCCCCCccEEcCcCCCHHHHHHHhCCCEEeeHHHHHHHHHHHhcC----------CceEEecCCccccchhHHHHHH
Confidence 999877644331 1112224554 77777777766655421 22344443321 11222
Q ss_pred hhcC---------CCeEEecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 006890 290 SKLN---------SDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEK 360 (627)
Q Consensus 290 ~~l~---------~~~~~~~~~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 360 (627)
..+. ...+++....+..+|+||||+||+.||+|+++++.++.++++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~d~~~~l~~lR~iKs~~EI~~~r~A~~i~~~a~~~~~~~~----------------------- 200 (438)
T PRK10879 144 EKLRKGSRQNLTAPATLTDWRPWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKC----------------------- 200 (438)
T ss_pred HHHHhhhccccCCcccchHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------
Confidence 2221 12466777889999999999999999999999999999887764
Q ss_pred ccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEE
Q 006890 361 KHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITR 440 (627)
Q Consensus 361 ~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tR 440 (627)
++|+||.|+++.+..... ..|...++|++|+++|+|++++||.|++ ++|++||+|++|+|+.|+||++|+||
T Consensus 201 ----~pG~tE~ei~a~~~~~~~-~~G~~~~~~~~iv~~G~na~~~H~~~~~---~~l~~GDlVliD~G~~~~GY~sDitR 272 (438)
T PRK10879 201 ----RPGMFEYQLEGEIHHEFN-RHGARYPSYNTIVGSGENGCILHYTENE---SEMRDGDLVLIDAGCEYKGYAGDITR 272 (438)
T ss_pred ----CCCCcHHHHHHHHHHHHH-HCCCCCCCCCcEEEEcCccccccCCCCc---cccCCCCEEEEEeCeEECCEEEEeEE
Confidence 789999999999887653 4566678999999999999999999875 89999999999999999999999999
Q ss_pred EEec-CCCCHHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHH----Hc--------------CC--CCccccc
Q 006890 441 TFHF-GKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLW----KY--------------GL--DYRHGTG 499 (627)
Q Consensus 441 T~~~-G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~----~~--------------G~--~~~h~~G 499 (627)
||++ |++|++|+++|++|++++.+++++++| |+++++|+.++++.+. +. ++ .|+|++|
T Consensus 273 T~~v~G~~s~~q~~~y~~vl~a~~aai~~~kp-G~~~~~v~~~~~~~~~~~l~~~Gl~~~~~~~~~~~~~~~~~~~Hg~G 351 (438)
T PRK10879 273 TFPVNGKFTPAQREIYDIVLESLETSLRLYRP-GTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLS 351 (438)
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHhCCcCCCHHHHHHhccCccccCCCCc
Confidence 9998 899999999999999999999999998 9999999999886543 22 33 5899999
Q ss_pred ccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeeecC---------ccEEEEeEeeEEecCCcccccCCcceeeee
Q 006890 500 HGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDG---------NFGIRLENVLVVTDANTKFNFGDKGYLSFE 570 (627)
Q Consensus 500 HgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~---------~~GvriEd~v~V~~~g~~~~~~~~~~~~fe 570 (627)
|||| |++||.|... .+ ++.+|+||||||+|||+|.+. .+||||||+|+||++|+ |
T Consensus 352 H~iG--ldvHd~~~~~-~~-~~~~L~~GmV~tvEPgiY~~~~~~~~~~~~~~GiRiED~VlVT~~G~------------e 415 (438)
T PRK10879 352 HWLG--LDVHDVGVYG-QD-RSRILEPGMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVITETGN------------E 415 (438)
T ss_pred cccC--cCcCcCCCcC-CC-CCCcCCCCCEEEECCEEEECCCcCcccccCccEEEeccEEEECCCcC------------e
Confidence 9999 9999998753 22 578999999999999999863 36999999999999998 8
Q ss_pred cccc-cccccccc
Q 006890 571 HITW-APYQIKMI 582 (627)
Q Consensus 571 ~lT~-~p~~~~~i 582 (627)
+||. +|.+.+.|
T Consensus 416 ~LT~~~pk~~~~i 428 (438)
T PRK10879 416 NLTASVVKKPDEI 428 (438)
T ss_pred EcCccCCCCHHHH
Confidence 9994 89855433
No 8
>PRK15173 peptidase; Provisional
Probab=100.00 E-value=4.9e-49 Score=411.33 Aligned_cols=260 Identities=21% Similarity=0.224 Sum_probs=230.7
Q ss_pred CCCEEEEcCCCCcHHHHhhc----CCCeEEecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006890 273 GSDLIWADPNSCSYALYSKL----NSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGAS 348 (627)
Q Consensus 273 ~~~~I~iD~~~~~~~~~~~l----~~~~~~~~~~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~ 348 (627)
.+++||+|.+.+++..++.| +..+++++++++..+|+||||+||+.||+|+++++.++..+++.+
T Consensus 54 ~~~rigve~~~~~~~~~~~l~~~l~~~~~~d~~~~i~~lR~iKs~~EI~~mr~A~~i~~~~~~~~~~~i----------- 122 (323)
T PRK15173 54 LNKKIAIDLNIMSNGGKRVIDAVMPNVDFVDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLI----------- 122 (323)
T ss_pred cCCEEEEecCccCHHHHHHHHhhCCCCeEEEhHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 46799999988888777766 446899999999999999999999999999999999998877654
Q ss_pred ccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeec
Q 006890 349 GYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSG 428 (627)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g 428 (627)
++|+||.|+++.+...... .+....++.+++++|+++ .+|+.|++ +.+++||+|++|+|
T Consensus 123 ----------------~~G~tE~el~a~~~~~~~~-~g~~~~~~~~~i~~G~~~-~~h~~~~~---~~l~~Gd~V~iD~g 181 (323)
T PRK15173 123 ----------------RVGCTSAELTAAYKAAVMS-KSETHFSRFHLISVGADF-SPKLIPSN---TKACSGDLIKFDCG 181 (323)
T ss_pred ----------------cCCCCHHHHHHHHHHHHHH-cCCCCCCCCcEEEECCCC-ccCCCCCC---CccCCCCEEEEEeC
Confidence 7899999999999765533 343334444678889884 68988875 89999999999999
Q ss_pred ceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC--CCcccccccccccC
Q 006890 429 AQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYL 506 (627)
Q Consensus 429 ~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l 506 (627)
++|+||++|+||||++|+|+++|+++|+.+++++.+++++++| |+++++|+.++++++++.|+ .+.|++|||||+++
T Consensus 182 ~~~~GY~aDitRT~~vG~p~~~~~~~y~~v~ea~~~~~~~irP-G~~~~dv~~a~~~~~~~~G~~~~~~~~~GHGiG~~l 260 (323)
T PRK15173 182 VDVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAP-GVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGVFL 260 (323)
T ss_pred ccCCCEeeeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHcCCccccCCCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999998 99999999999999999998 35688999999888
Q ss_pred ccccCCCcCCCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEEecCCcccccCCcceeeeeccccccccc
Q 006890 507 NVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQI 579 (627)
Q Consensus 507 ~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~~p~~~ 579 (627)
++||.|.+... ++.+|++||||++|||+|.++.+|+|+||+|+||++|+ |.||..|.++
T Consensus 261 g~~E~P~i~~~--~~~~Le~GMV~tiEPgiy~~g~ggvriEDtvlVTe~G~------------e~LT~~p~~l 319 (323)
T PRK15173 261 GLEESPFVSTH--ATESFTSGMVLSLETPYYGYNLGSIMIEDMILINKEGI------------EFLSKLPRDL 319 (323)
T ss_pred CcCCCCCCCCC--CCCccCCCCEEEECCEEEcCCCcEEEEeeEEEEcCCcc------------eeCCCCCccc
Confidence 99999987543 67899999999999999999999999999999999997 8999988754
No 9
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=4.3e-45 Score=369.16 Aligned_cols=216 Identities=18% Similarity=0.200 Sum_probs=195.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCC
Q 006890 308 KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHF 387 (627)
Q Consensus 308 r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~ 387 (627)
-.||||+||+.||+|+++++.++..+++.+ ++|+||.|+++.++..+.. .|.
T Consensus 2 ~~iKs~~EI~~~r~A~~i~~~~~~~~~~~~---------------------------~~G~tE~el~~~~~~~~~~-~G~ 53 (248)
T PRK12897 2 ITIKTKNEIDLMHESGKLLASCHREIAKIM---------------------------KPGITTKEINTFVEAYLEK-HGA 53 (248)
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHHHHhhc---------------------------CCCCcHHHHHHHHHHHHHH-cCC
Confidence 379999999999999999999998877654 7999999999999887643 343
Q ss_pred C-----CCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHH
Q 006890 388 R-----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGH 462 (627)
Q Consensus 388 ~-----~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~ 462 (627)
. ..+|++++++|+|++.+||.|++ ++|++||+|++|+|+.|+||++|+||||++|+|+++|+++|+.+++++
T Consensus 54 ~~~~~~~~~~~~~i~~g~n~~~~H~~p~~---~~l~~Gd~V~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~ 130 (248)
T PRK12897 54 TSEQKGYNGYPYAICASVNDEMCHAFPAD---VPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENAL 130 (248)
T ss_pred cccccccCCCCcceEeccCCEeecCCCCC---cccCCCCEEEEEeeEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3 24788889999999999999986 899999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcccchHHHHHHHHHHHcCC-CCcccccccccccCccccCCCcCCCC-C-CCCcccCCcEEeeCceee--
Q 006890 463 IALGNAVFPNGTCGHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHEGPQSISFK-P-RNVPIHASMTATDEPGYY-- 537 (627)
Q Consensus 463 ~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~-~~~h~~GHgvG~~l~vhE~P~~~~~~-~-~~~~l~~Gmv~siEPg~y-- 537 (627)
.+++++++| |+++++++.++++++++.|+ .+.|++||||| +++||.|.+.... + ++.+|+|||||++|||+|
T Consensus 131 ~~~i~~~kp-G~~~~dv~~a~~~~~~~~g~~~~~~~~GHgiG--l~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~~~ 207 (248)
T PRK12897 131 YKGIDQAVI-GNRVGDIGYAIESYVANEGFSVARDFTGHGIG--KEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVG 207 (248)
T ss_pred HHHHHhhcC-CCccchHHHHHHHHHHHcCCccCCCeEECccC--CcccCCCccCCCCCCCCCCCcCCCCEEEECCeEecC
Confidence 999999998 99999999999999999999 46899999999 9999999875322 1 567899999999999999
Q ss_pred ---------------ecCccEEEEeEeeEEecCCc
Q 006890 538 ---------------EDGNFGIRLENVLVVTDANT 557 (627)
Q Consensus 538 ---------------~~~~~GvriEd~v~V~~~g~ 557 (627)
.+|.+|+|+||||+||++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~g~r~edtv~Vt~~G~ 242 (248)
T PRK12897 208 MRYSKVDLNGWTARTMDGKLSAQYEHTIAITKDGP 242 (248)
T ss_pred CCceEECCCCcEEEcCCCCeEeecceEEEEeCCcc
Confidence 36778999999999999997
No 10
>PRK13607 proline dipeptidase; Provisional
Probab=100.00 E-value=2.4e-44 Score=389.36 Aligned_cols=223 Identities=25% Similarity=0.306 Sum_probs=192.1
Q ss_pred ecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHH
Q 006890 299 LQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLE 378 (627)
Q Consensus 299 ~~~~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~ 378 (627)
+....+..+|+|||++||+.||+|+++++.++..+++.+ ++|+||.|+++.+.
T Consensus 150 ~l~~~l~~lR~iKs~~EI~~mr~A~~i~~~a~~~~~~~i---------------------------~pG~tE~ei~~~~~ 202 (443)
T PRK13607 150 GVLDYLHYHRAYKTDYELACMREAQKIAVAGHRAAKEAF---------------------------RAGMSEFDINLAYL 202 (443)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------hcCCCHHHHHHHHH
Confidence 345678899999999999999999999999998887764 68999999998765
Q ss_pred HHHHhhcCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHH
Q 006890 379 SFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAV 458 (627)
Q Consensus 379 ~~~~~~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v 458 (627)
... ..+..+.+|++|+++|+|++++||.+++ .+.+++||+|++|+|+.|+||++|+||||+ |+++++++++|++|
T Consensus 203 ~~~--~~~~~~~~y~~iva~G~naa~~H~~~~~--~~~~~~Gd~vliD~Ga~~~GY~sDiTRTf~-g~~~~~~~~ly~~v 277 (443)
T PRK13607 203 TAT--GQRDNDVPYGNIVALNEHAAVLHYTKLD--HQAPAEMRSFLIDAGAEYNGYAADITRTYA-AKEDNDFAALIKDV 277 (443)
T ss_pred HHh--CCCCcCCCCCcEEEecCcceEecCCccC--CCCCCCCCEEEEEeeEEECCEEecceEEEe-cCCCHHHHHHHHHH
Confidence 432 2344567999999999999999999875 246899999999999999999999999999 88999999999999
Q ss_pred HHHHHHHHhccCCCCcccchHHHHHHHHHH----Hc--------------CC---CCcccccccccccCccccCCCcCC-
Q 006890 459 LKGHIALGNAVFPNGTCGHTLDILARLPLW----KY--------------GL---DYRHGTGHGVGSYLNVHEGPQSIS- 516 (627)
Q Consensus 459 ~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~----~~--------------G~---~~~h~~GHgvG~~l~vhE~P~~~~- 516 (627)
++++.+++++++| |+++.+|+.++++.+. +. |+ .|+|++||||| |++||.|....
T Consensus 278 ~~aq~aai~~ikP-G~~~~dv~~aa~~~i~~~L~~~Gl~~g~~~~~~~~~g~~~~~f~HglGH~iG--ldvHd~~~~~~~ 354 (443)
T PRK13607 278 NKEQLALIATMKP-GVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGITSPFFPHGLGHPLG--LQVHDVAGFMQD 354 (443)
T ss_pred HHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhCCCceEecCCCccCccC--cccccCCCcccc
Confidence 9999999999998 9999999999987663 22 33 47999999999 99999753211
Q ss_pred --------------CCCCCCcccCCcEEeeCceeeecC-------------------------ccEEEEeEeeEEecCCc
Q 006890 517 --------------FKPRNVPIHASMTATDEPGYYEDG-------------------------NFGIRLENVLVVTDANT 557 (627)
Q Consensus 517 --------------~~~~~~~l~~Gmv~siEPg~y~~~-------------------------~~GvriEd~v~V~~~g~ 557 (627)
.+ ...+|+||||||+|||+|+++ .+||||||+|+||++|+
T Consensus 355 ~~~~~~~~~~~~~~l~-~~~~L~~GmV~TvEPGiY~~~~ll~~~~~~~~~~~in~~~i~~~~~~GGvRIED~vlVT~~G~ 433 (443)
T PRK13607 355 DRGTHLAAPEKHPYLR-CTRVLEPGMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFGGIRIEDNVVVHENGV 433 (443)
T ss_pred cccccccccccccccc-cCCcCCCCcEEEECCeeeeChhhhchhhhhhhhhhccHHHHHhhcCCCEEeecceEEEcCCCC
Confidence 01 457899999999999999964 67999999999999998
No 11
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00 E-value=2.4e-44 Score=356.67 Aligned_cols=216 Identities=58% Similarity=1.041 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCC--cCHHHHHHHHHHHHHhhcCCCCCcCCcc
Q 006890 318 GLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVK--LTEVTVSDKLESFRASKEHFRGLSFPTI 395 (627)
Q Consensus 318 ~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~tE~ei~~~l~~~~~~~~g~~~~~f~~i 395 (627)
+||.|+..++.++.+.++++.+.+ ++| +||.||++.+++++....++.+.+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i-----------------------~~G~~~tE~eiaa~~~~~~~~~g~~~~~~f~~~ 57 (224)
T cd01085 1 GMRAAHIRDGVALVEFLAWLEQEV-----------------------PKGETITELSAADKLEEFRRQQKGYVGLSFDTI 57 (224)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh-----------------------ccCCCEeHHHHHHHHHHHHHHcCCCcCCCcceE
Confidence 378899999988888888876543 789 9999999999987754455666789999
Q ss_pred cccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 006890 396 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTC 475 (627)
Q Consensus 396 ~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~ 475 (627)
+++|+|++++|+.|+..++++|++||+|++|+|+.|+||++|+||||++|+|+++|+++|+.++++++++++.++|+|++
T Consensus 58 v~~g~n~~~~H~~p~~~~~r~l~~GD~V~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 137 (224)
T cd01085 58 SGFGPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTT 137 (224)
T ss_pred EEecCccCcCCCCcCcccCcccCCCCEEEEEeCccCCCcccccEEeecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999843348999999999999999999999999999999999999999999999999999888655999
Q ss_pred cchHHHHHHHHHHHcCCCCcccccccccccCccccCCCcC-CCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEEec
Q 006890 476 GHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSI-SFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 554 (627)
Q Consensus 476 ~~~l~~~a~~~l~~~G~~~~h~~GHgvG~~l~vhE~P~~~-~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~~ 554 (627)
+.+++.++++.+.+.|++|.|++|||||.+|++||.|.++ ..+ ++.+|+|||||++||++|.++.+|+|+||+|+||+
T Consensus 138 ~~~v~~~~~~~~~~~g~~~~h~~GHgIG~~l~~hE~P~i~~~~~-~~~~L~~GmvftiEP~iy~~g~~gvried~v~Vt~ 216 (224)
T cd01085 138 GSQLDALARQPLWKAGLDYGHGTGHGVGSFLNVHEGPQSISPAP-NNVPLKAGMILSNEPGYYKEGKYGIRIENLVLVVE 216 (224)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCCCCCCcCCcCC-CCCCcCCCCEEEECCEeEeCCCeEEEeeEEEEEee
Confidence 9999999999999999999999999999766899999875 333 67899999999999999999999999999999999
Q ss_pred CCc
Q 006890 555 ANT 557 (627)
Q Consensus 555 ~g~ 557 (627)
+|+
T Consensus 217 ~G~ 219 (224)
T cd01085 217 AET 219 (224)
T ss_pred CCc
Confidence 997
No 12
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.9e-44 Score=368.09 Aligned_cols=228 Identities=17% Similarity=0.193 Sum_probs=200.8
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhc-
Q 006890 307 AKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKE- 385 (627)
Q Consensus 307 ~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~- 385 (627)
|..+|||+||+.||+|+++++.++..+.+.+ +||+||.||++.++....+.+
T Consensus 1 m~~iKs~~EI~~mr~A~~i~~~~~~~~~~~i---------------------------~pG~te~ei~~~~~~~~~~~g~ 53 (286)
T PRK07281 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLI---------------------------KPGVDMWEVEEYVRRRCKEENV 53 (286)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------cCCCcHHHHHHHHHHHHHHcCC
Confidence 3579999999999999999999988876654 799999999999987654321
Q ss_pred -----CCC--CCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecc---------------------------ee
Q 006890 386 -----HFR--GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGA---------------------------QY 431 (627)
Q Consensus 386 -----g~~--~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~---------------------------~y 431 (627)
|+. ..+|++++++|.|++++|+.|++ ++|++||+|++|+|+ .|
T Consensus 54 ~~~~~G~~~~~~~f~~~v~~G~n~~~~H~~p~~---~~l~~Gd~v~iD~g~~~~~~~y~~d~~~~~~~~~~~~~~~~~~~ 130 (286)
T PRK07281 54 LPLQIGVDGAMMDYPYATCCGLNDEVAHAFPRH---YILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVEQMKKYTESY 130 (286)
T ss_pred cccccCCCCcccCCCcceEEeccccccCCCCCC---cCcCCCCEEEEEeccccccccccccccccccccccccccccccc
Confidence 122 26899999999999999999986 899999999999997 48
Q ss_pred cCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC-CCcccccccccccCcccc
Q 006890 432 QDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHE 510 (627)
Q Consensus 432 ~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~-~~~h~~GHgvG~~l~vhE 510 (627)
+||++|+||||++|+|+++|+++|+.+++++.+++++++| |+++++|+.++++++.+.|+ .+.|++||||| +++||
T Consensus 131 ~gy~~D~~rT~~vG~~~~~~~~l~~~~~ea~~~ai~~~kp-G~~~~di~~a~~~~~~~~G~~~~~~~~GHGIG--l~~hE 207 (286)
T PRK07281 131 RGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVV-GNRIGDIGAAIQEYAESRGYGVVRDLVGHGVG--PTMHE 207 (286)
T ss_pred CCEEeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHcCCccCCCeeeeeCC--CccCC
Confidence 9999999999999999999999999999999999999998 99999999999999999998 46799999999 99999
Q ss_pred CCCcCCCC-C-CCCcccCCcEEeeCceeee------------------cCccEEEEeEeeEEecCCcccccCCcceeeee
Q 006890 511 GPQSISFK-P-RNVPIHASMTATDEPGYYE------------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFE 570 (627)
Q Consensus 511 ~P~~~~~~-~-~~~~l~~Gmv~siEPg~y~------------------~~~~GvriEd~v~V~~~g~~~~~~~~~~~~fe 570 (627)
.|.+.... + ++.+|+|||||++|||+|. +|.+|+|+||+|+||++|+ |
T Consensus 208 ~P~i~~~~~~~~~~~Le~GMV~tiEPgiy~~~~~~~~~~~~gw~~~~~~g~~gvr~EdtvlVT~~G~------------e 275 (286)
T PRK07281 208 EPMVPNYGTAGRGLRLREGMVLTIEPMINTGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGP------------V 275 (286)
T ss_pred CCcCCCcccCCCCCEECCCCEEEECCeeEcCCcceecccCCCceEEecCCCcEEEeccEEEEeCCcc------------e
Confidence 99874321 1 5678999999999999986 4567899999999999997 8
Q ss_pred ccccccccc
Q 006890 571 HITWAPYQI 579 (627)
Q Consensus 571 ~lT~~p~~~ 579 (627)
.||..+.++
T Consensus 276 ~LT~~~~~~ 284 (286)
T PRK07281 276 ILTSQGEER 284 (286)
T ss_pred ECCCCCccc
Confidence 898766544
No 13
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00 E-value=1.3e-43 Score=364.37 Aligned_cols=227 Identities=20% Similarity=0.212 Sum_probs=199.2
Q ss_pred cchhhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHH
Q 006890 304 LALAKA-IKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRA 382 (627)
Q Consensus 304 i~~~r~-iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~ 382 (627)
+..++. ||||+||+.||+|+++++.++.++++.+ ++|+||.||++.+..+..
T Consensus 36 ~~~~~i~IKs~~EIe~~R~Aa~I~~~a~~a~~~~i---------------------------rpG~tE~Eiaa~~~~~~~ 88 (291)
T PRK12318 36 ASQYDIIIKTPEQIEKIRKACQVTARILDALCEAA---------------------------KEGVTTNELDELSRELHK 88 (291)
T ss_pred cCCCceEECCHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------cCCCCHHHHHHHHHHHHH
Confidence 444555 9999999999999999999998887664 799999999988876653
Q ss_pred hhcCC-------CCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHH
Q 006890 383 SKEHF-------RGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACY 455 (627)
Q Consensus 383 ~~~g~-------~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y 455 (627)
. .|. .+.+|++++++|.|++++|+.|++ ++|++||+|++|+|+.|.||++|+||||++|+|+++|+++|
T Consensus 89 ~-~G~~~~~~~~~~~~f~~~v~~g~n~~~~H~~p~~---~~l~~GD~V~vD~g~~~~GY~aDitRT~~vG~~~~~~~~~~ 164 (291)
T PRK12318 89 E-YNAIPAPLNYGSPPFPKTICTSLNEVICHGIPND---IPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVC 164 (291)
T ss_pred H-cCCCccccccCCCCCCcceEeeccceeecCCCCC---CccCCCCEEEEEEeEEECcEEEEEEEEEECCCCCHHHHHHH
Confidence 2 232 235798999999999999999986 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCCCC-CCCcccCCcEEeeC
Q 006890 456 TAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKP-RNVPIHASMTATDE 533 (627)
Q Consensus 456 ~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~~~-~~~~l~~Gmv~siE 533 (627)
+.+++++.+++++++| |+++++|+.++++++++.|+. +.|.+||||| |++||.|.+....+ ++.+|+|||||++|
T Consensus 165 ~~~~~a~~~~i~~~rp-G~~~~dv~~a~~~~~~~~G~~~~~~~~GHgIG--l~~hE~P~i~~~~~~~~~~L~~GMV~~iE 241 (291)
T PRK12318 165 QASLECLNAAIAILKP-GIPLYEIGEVIENCADKYGFSVVDQFVGHGVG--IKFHENPYVPHHRNSSKIPLAPGMIFTIE 241 (291)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCccCCCcccCCcC--ccccCCCcccCcCCCCCCEeCCCCEEEEC
Confidence 9999999999999998 999999999999999999984 5789999999 99999998865332 46789999999999
Q ss_pred ceeeecC---------ccEEE---------EeEeeEEecCCcccccCCcceeeeecccccc
Q 006890 534 PGYYEDG---------NFGIR---------LENVLVVTDANTKFNFGDKGYLSFEHITWAP 576 (627)
Q Consensus 534 Pg~y~~~---------~~Gvr---------iEd~v~V~~~g~~~~~~~~~~~~fe~lT~~p 576 (627)
|++|.++ .||+| +||||+||++|+ |.||..|
T Consensus 242 P~i~~~~~~g~~~~~~~~~~~~~~g~~~~~~edtv~VTe~G~------------e~LT~~~ 290 (291)
T PRK12318 242 PMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTILITETGY------------EILTLLD 290 (291)
T ss_pred CEEEcCCCceEEecCCCcEEEecCCCeeeeeeeEEEEcCCcc------------eeCCCCC
Confidence 9999863 33345 699999999998 8898776
No 14
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=100.00 E-value=4.4e-43 Score=354.83 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=192.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCC
Q 006890 309 AIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFR 388 (627)
Q Consensus 309 ~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~ 388 (627)
+||||+||+.||+|++++++++..+++.+ ++|+||.|+++.+...+.+ .|..
T Consensus 2 ~iKs~~Ei~~~r~A~~i~~~~~~~~~~~i---------------------------~~G~tE~el~~~~~~~~~~-~G~~ 53 (247)
T TIGR00500 2 SLKSPDEIEKIRKAGRLAAEVLEELEREV---------------------------KPGVSTKELDRIAKDFIEK-HGAK 53 (247)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------cCCCCHHHHHHHHHHHHHH-CCCC
Confidence 69999999999999999999998877654 7999999999999876643 3422
Q ss_pred -----CCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHH
Q 006890 389 -----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHI 463 (627)
Q Consensus 389 -----~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~ 463 (627)
..+|++++++|+|++++||.|++ ++|++||+|++|+|++|.||++|+||||++|+|+++|+++|+.+++++.
T Consensus 54 ~~~~~~~~~~~~~~~~~n~~~~H~~~~~---~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~a~~ 130 (247)
T TIGR00500 54 PAFLGYYGFPGSVCISVNEVVIHGIPDK---KVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEKLLECTEESLY 130 (247)
T ss_pred ccccCCCCCCceeEeccccEEEecCCCC---cccCCCCEEEEEEEEEECCEEEEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 23578888999999999999985 8999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCCC-C-CCCcccCCcEEeeCceeeec-
Q 006890 464 ALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFK-P-RNVPIHASMTATDEPGYYED- 539 (627)
Q Consensus 464 ~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~~-~-~~~~l~~Gmv~siEPg~y~~- 539 (627)
+++++++| |+++++|+.++++.+.+.|+. +.|.+||||| +.+||.|.+.... + ++.+|++||||++||++|.+
T Consensus 131 ~~~~~~kp-G~~~~~v~~~~~~~~~~~g~~~~~~~~GHgiG--~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~~~~ 207 (247)
T TIGR00500 131 KAIEEAKP-GNRIGEIGAAIQKYAEAKGFSVVREYCGHGIG--RKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGT 207 (247)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHcCCEeccCccCCccC--cccCCCCccCCcCcCCCCCEecCCCEEEEeeEEEcCC
Confidence 99999998 999999999999999999994 6788999999 9999999764321 1 57899999999999999973
Q ss_pred ----------------CccEEEEeEeeEEecCCc
Q 006890 540 ----------------GNFGIRLENVLVVTDANT 557 (627)
Q Consensus 540 ----------------~~~GvriEd~v~V~~~g~ 557 (627)
+.+|+|+||+|+||++|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~g~ried~v~Vt~~G~ 241 (247)
T TIGR00500 208 EEITTAADGWTVKTKDGSLSAQFEHTIVITDNGP 241 (247)
T ss_pred CcEEECCCCCEEEccCCCeEEEEeEEEEEcCCcc
Confidence 568999999999999998
No 15
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=100.00 E-value=7.4e-43 Score=347.00 Aligned_cols=236 Identities=30% Similarity=0.427 Sum_probs=205.8
Q ss_pred CccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHH
Q 006890 302 SPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFR 381 (627)
Q Consensus 302 ~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~ 381 (627)
..+...|.|||+.||+.||.|+++++.|+.++++.+ ++|+.|+++....+...
T Consensus 177 p~m~E~RviKs~~EieviRya~kISseaH~~vM~~~---------------------------~pg~~Eyq~eslF~hh~ 229 (492)
T KOG2737|consen 177 PILAECRVIKSSLEIEVIRYANKISSEAHIEVMRAV---------------------------RPGMKEYQLESLFLHHS 229 (492)
T ss_pred HHHhhheeeCCHHHHHHHHHHHhhccHHHHHHHHhC---------------------------CchHhHHhHHHHHHHhh
Confidence 457889999999999999999999999999999876 79999999999988765
Q ss_pred HhhcCCCCCcCCcccccCCCcccccc----cCCCCccCCCCCCCeEEEeecceecCcccceEEEEec-CCCCHHHHHHHH
Q 006890 382 ASKEHFRGLSFPTISSVGPNAAIMHY----SPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSAHEKACYT 456 (627)
Q Consensus 382 ~~~~g~~~~~f~~i~~~G~n~a~~h~----~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~-G~p~~e~~~~y~ 456 (627)
...+|+...+|.+|++||+|+++.|| .|++ +.|+.||+.++|.|+.|.+|++|||++|+. |+.|++||.+|+
T Consensus 230 y~~GGcRh~sYtcIc~sG~ns~vLHYgha~apNd---~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYn 306 (492)
T KOG2737|consen 230 YSYGGCRHLSYTCICASGDNSAVLHYGHAGAPND---RTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYN 306 (492)
T ss_pred hccCCccccccceeeecCCCcceeeccccCCCCC---cccCCCCEEEEecCcceeeeecccceeccCCCccchhHHHHHH
Confidence 56788899999999999999999999 6654 899999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHhccCCCCcccchHHHHHHHHHH----HcCC----------------CCcccccccccccCcccc---CCC
Q 006890 457 AVLKGHIALGNAVFPNGTCGHTLDILARLPLW----KYGL----------------DYRHGTGHGVGSYLNVHE---GPQ 513 (627)
Q Consensus 457 ~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~----~~G~----------------~~~h~~GHgvG~~l~vhE---~P~ 513 (627)
+|+.++.+++++++| |+.+.+++.++.+++- +.|+ .++||.||-+| |+||| .|.
T Consensus 307 aVLda~navm~a~Kp-Gv~W~Dmh~La~kvlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lG--lDvHDvGGyp~ 383 (492)
T KOG2737|consen 307 AVLDASNAVMEAMKP-GVWWVDMHKLAEKVLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLG--LDVHDVGGYPE 383 (492)
T ss_pred HHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHHhcCceeccHHHHHHhccCeeecccccccccc--ccccccCCCCC
Confidence 999999999999998 9999999998876553 3343 57999999999 99998 221
Q ss_pred -cCCCC-C------CCCcccCCcEEeeCceeeec--------------------------CccEEEEeEeeEEecCCccc
Q 006890 514 -SISFK-P------RNVPIHASMTATDEPGYYED--------------------------GNFGIRLENVLVVTDANTKF 559 (627)
Q Consensus 514 -~~~~~-~------~~~~l~~Gmv~siEPg~y~~--------------------------~~~GvriEd~v~V~~~g~~~ 559 (627)
.-.+. | ..+.|++|||+|+|||+|+- +.+||||||.|+||++|.
T Consensus 384 ~~~rp~~P~l~~LR~aR~L~e~MviTvEPGcYFi~~Ll~ealadp~~~~f~n~e~~~rfr~~GGVRIEdDv~vt~~G~-- 461 (492)
T KOG2737|consen 384 GVERPDEPGLRSLRTARHLKEGMVITVEPGCYFIDFLLDEALADPARAEFLNREVLQRFRGFGGVRIEDDVVVTKSGI-- 461 (492)
T ss_pred CCCCCCcchhhhhhhhhhhhcCcEEEecCChhHHHHHHHHHhcChHhhhhhhHHHHHHhhccCceEeeccEEEecccc--
Confidence 11111 1 35679999999999999961 468999999999999997
Q ss_pred ccCCcceeeeecccccccccccc
Q 006890 560 NFGDKGYLSFEHITWAPYQIKMI 582 (627)
Q Consensus 560 ~~~~~~~~~fe~lT~~p~~~~~i 582 (627)
|+||.+|.....|
T Consensus 462 ----------enlt~vprtveeI 474 (492)
T KOG2737|consen 462 ----------ENLTCVPRTVEEI 474 (492)
T ss_pred ----------ccccCCCCCHHHH
Confidence 9999999955444
No 16
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00 E-value=2e-42 Score=351.25 Aligned_cols=225 Identities=22% Similarity=0.235 Sum_probs=200.8
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcC
Q 006890 307 AKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEH 386 (627)
Q Consensus 307 ~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g 386 (627)
+-+||||+||+.||+|+++++.++..+++.+ ++|+||.|+++.+...... .|
T Consensus 2 ~~~iKs~~Ei~~~r~A~~i~~~~~~~a~~~i---------------------------~pG~se~ela~~~~~~~~~-~G 53 (252)
T PRK05716 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHV---------------------------KPGVTTKELDRIAEEYIRD-QG 53 (252)
T ss_pred ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------cCCCCHHHHHHHHHHHHHH-CC
Confidence 4579999999999999999999998877654 7899999999998876543 33
Q ss_pred C-----CCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHH
Q 006890 387 F-----RGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKG 461 (627)
Q Consensus 387 ~-----~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~ 461 (627)
. ...+|++++++|.|+..+|+.|++ ++|++||+|++|+|+.|.||++|++||+++|+|+++++++|+.++++
T Consensus 54 ~~~~~~~~~~~~~~~~~g~~~~~~h~~~~~---~~l~~Gd~v~id~g~~~~gY~~d~~RT~~vG~~~~~~~~~~~~~~~~ 130 (252)
T PRK05716 54 AIPAPLGYHGFPKSICTSVNEVVCHGIPSD---KVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDKRLCEVTKEA 130 (252)
T ss_pred CEecccCCCCCCcCeEecccceeecCCCCC---cccCCCCEEEEEEEEEECCEEEEeEEEEECCCCCHHHHHHHHHHHHH
Confidence 2 124677888999999999999876 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCC-CC-CCCcccCCcEEeeCceeee
Q 006890 462 HIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISF-KP-RNVPIHASMTATDEPGYYE 538 (627)
Q Consensus 462 ~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~-~~-~~~~l~~Gmv~siEPg~y~ 538 (627)
+.+++++++| |+++++|+.++++.+++.|+. ..|.+||||| +.+||.|.+..+ .+ ++.+|+|||||++||++|.
T Consensus 131 ~~~~~~~~~p-G~~~~dv~~~~~~~~~~~g~~~~~~~~GHgiG--~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~~ 207 (252)
T PRK05716 131 LYLGIAAVKP-GARLGDIGHAIQKYAEAEGFSVVREYCGHGIG--RKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINA 207 (252)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCeeecCccccccC--CccCCCCccCcCCCCCCCCEecCCCEEEEccEEEc
Confidence 9999999998 999999999999999999984 5688999999 999999977543 12 6789999999999999996
Q ss_pred -----------------cCccEEEEeEeeEEecCCcccccCCcceeeeeccccccc
Q 006890 539 -----------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPY 577 (627)
Q Consensus 539 -----------------~~~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~~p~ 577 (627)
+|.+|+|+||+|+||++|+ |.||..|.
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~~g~~~ed~v~Vt~~G~------------e~Lt~~~~ 251 (252)
T PRK05716 208 GKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTEDGP------------EILTLRPE 251 (252)
T ss_pred CCCceEEcCCCCEEEccCCCcEEeeeeEEEEcCCcc------------EEeeCCCC
Confidence 5778999999999999998 89998875
No 17
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00 E-value=9.9e-42 Score=339.58 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcC---
Q 006890 316 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSF--- 392 (627)
Q Consensus 316 i~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f--- 392 (627)
|+.||+|++++++++..+++.+ +||+||.|+++.+...+.+ .|..+.++
T Consensus 1 I~~ir~Aa~i~d~~~~~~~~~i---------------------------~pG~tE~ei~a~~~~~~~~-~ga~~~~~~~~ 52 (228)
T cd01090 1 IALIRHGARIADIGGAAVVEAI---------------------------REGVPEYEVALAGTQAMVR-EIAKTFPEVEL 52 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh---------------------------cCCCCHHHHHHHHHHHHHH-cCCccCCcccc
Confidence 6799999999999999887765 7999999999998776633 33222222
Q ss_pred ---CcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 006890 393 ---PTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAV 469 (627)
Q Consensus 393 ---~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~ 469 (627)
.+++++|+|++.+|+.|++ ++|++||+|++|+|+.|+||++|++|||++|+|+++|+++|+.+++++.++++++
T Consensus 53 ~~~~~~v~~G~~~~~~H~~~~~---r~l~~GD~v~~d~g~~~~GY~ad~~RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~ 129 (228)
T cd01090 53 MDTWTWFQSGINTDGAHNPVTN---RKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELI 129 (228)
T ss_pred cCcceEEEeeccccccCCCCCC---cccCCCCEEEEEEeEEECCEeeeeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3678999999999999875 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHHcCC--CCcccccccccccCccccCCCc----CCCCCCCCcccCCcEEeeCceeeec----
Q 006890 470 FPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQS----ISFKPRNVPIHASMTATDEPGYYED---- 539 (627)
Q Consensus 470 ~p~G~~~~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l~vhE~P~~----~~~~~~~~~l~~Gmv~siEPg~y~~---- 539 (627)
+| |+++++|++++++.+.++|+ .+.|++||||| +.+||.|.. +... ++.+|+|||||++||++|.+
T Consensus 130 rp-G~~~~~v~~a~~~~~~~~G~~~~~~~~~GHgiG--l~~he~~~~~g~~~~~~-~~~~Le~GMV~~iEP~i~~~~~~~ 205 (228)
T cd01090 130 KP-GARCKDIAAELNEMYREHDLLRYRTFGYGHSFG--VLSHYYGREAGLELRED-IDTVLEPGMVVSMEPMIMLPEGQP 205 (228)
T ss_pred CC-CCcHHHHHHHHHHHHHHcCCCcccccccCcccc--cccccCCCccccccCCC-CCCccCCCCEEEECCEEeecccCC
Confidence 98 99999999999999999998 46899999999 999998743 1222 56899999999999999984
Q ss_pred CccEEEEeEeeEEecCCc
Q 006890 540 GNFGIRLENVLVVTDANT 557 (627)
Q Consensus 540 ~~~GvriEd~v~V~~~g~ 557 (627)
|.+|+|+||+|+||++|+
T Consensus 206 g~gG~ried~v~Vt~~G~ 223 (228)
T cd01090 206 GAGGYREHDILVINENGA 223 (228)
T ss_pred CCcEEEeeeEEEECCCcc
Confidence 789999999999999997
No 18
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00 E-value=1.9e-41 Score=344.67 Aligned_cols=218 Identities=22% Similarity=0.180 Sum_probs=194.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhc
Q 006890 306 LAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKE 385 (627)
Q Consensus 306 ~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~ 385 (627)
++++|||++||+.||+|+++++.++..+++.+ ++|+||.|+++.+...... .
T Consensus 6 ~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i---------------------------~pG~te~el~~~~~~~~~~-~ 57 (255)
T PRK12896 6 RGMEIKSPRELEKMRKIGRIVATALKEMGKAV---------------------------EPGMTTKELDRIAEKRLEE-H 57 (255)
T ss_pred CceeECCHHHHHHHHHHHHHHHHHHHHHHhhc---------------------------cCCCCHHHHHHHHHHHHHH-C
Confidence 45689999999999999999999998877654 7999999999999876633 3
Q ss_pred CCC-----CCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHH
Q 006890 386 HFR-----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLK 460 (627)
Q Consensus 386 g~~-----~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~ 460 (627)
|.. ..+|++++++|.|...+|+.|++ ++|++||+|++|+|+.|.||++|++|||++|+|+++++++|+.+++
T Consensus 58 G~~~~~~~~~~~~~~~~~~~n~~~~h~~p~~---~~l~~Gd~v~iD~g~~~~gY~aD~~RT~~vG~~~~~~~~~~~~~~~ 134 (255)
T PRK12896 58 GAIPSPEGYYGFPGSTCISVNEEVAHGIPGP---RVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEKLCRVAEE 134 (255)
T ss_pred CCEeCcccCCCCCcceEecCCCeeEecCCCC---ccCCCCCEEEEEEeEEECcEEEeeEEEEECCCCCHHHHHHHHHHHH
Confidence 332 34677888889999999999876 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCcccchHHHHHHHHHHHcCC-CCcccccccccccCccccCCCcCCCC--C-CCCcccCCcEEeeCcee
Q 006890 461 GHIALGNAVFPNGTCGHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHEGPQSISFK--P-RNVPIHASMTATDEPGY 536 (627)
Q Consensus 461 ~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~-~~~h~~GHgvG~~l~vhE~P~~~~~~--~-~~~~l~~Gmv~siEPg~ 536 (627)
++.+++++++| |+++++|+.++++.+.+.|+ .+.|.+||||| +.+||.|.++... + ++.+|++||||++||++
T Consensus 135 a~~~~~~~~kp-G~~~~~v~~~~~~~~~~~G~~~~~~~~GHgiG--~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i 211 (255)
T PRK12896 135 ALWAGIKQVKA-GRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVG--RSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFL 211 (255)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCEeccCcccCCcC--cccccCCCccccCCCCCCCCEecCCcEEEEeceE
Confidence 99999999998 99999999999999999998 46789999999 9999999665321 2 56899999999999999
Q ss_pred e-----------------ecCccEEEEeEeeEEecCCc
Q 006890 537 Y-----------------EDGNFGIRLENVLVVTDANT 557 (627)
Q Consensus 537 y-----------------~~~~~GvriEd~v~V~~~g~ 557 (627)
| .++.+|+|+||||+||++|+
T Consensus 212 ~~g~~~~~~~~~~~~~~~~~~~~~~~~edtv~vt~~G~ 249 (255)
T PRK12896 212 NLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRDGP 249 (255)
T ss_pred EcCCCceEEcCCCCEEEecCCCeEEEEEEEEEEcCCcc
Confidence 8 46789999999999999997
No 19
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00 E-value=2.2e-41 Score=341.57 Aligned_cols=206 Identities=30% Similarity=0.392 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCcc
Q 006890 316 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTI 395 (627)
Q Consensus 316 i~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i 395 (627)
|+.||+|+++++.++.++++.+ ++|+||.|+++.++....+ .|.. ++|+++
T Consensus 1 i~~lr~A~~i~~~~~~~~~~~i---------------------------~pG~tE~ei~~~~~~~~~~-~G~~-~~~~~~ 51 (243)
T cd01087 1 IELMRKACDISAEAHRAAMKAS---------------------------RPGMSEYELEAEFEYEFRS-RGAR-LAYSYI 51 (243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC---------------------------cCCCcHHHHHHHHHHHHHH-cCCC-cCCCCe
Confidence 6799999999999998887664 7999999999999886643 4443 678999
Q ss_pred cccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEec-CCCCHHHHHHHHHHHHHHHHHHhccCCCCc
Q 006890 396 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSAHEKACYTAVLKGHIALGNAVFPNGT 474 (627)
Q Consensus 396 ~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~-G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~ 474 (627)
+++|+|++.+|+.|++ ++|++||+|++|+|++|+||++|++|||++ |+|+++++++|+.+++++.+++++++| |+
T Consensus 52 v~~g~~~~~~H~~~~~---~~l~~Gd~v~vD~g~~~~GY~ad~~Rt~~vgg~~~~~~~~~~~~~~~a~~~~i~~~rp-G~ 127 (243)
T cd01087 52 VAAGSNAAILHYVHND---QPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKP-GV 127 (243)
T ss_pred EEECCCccccCCCcCC---CcCCCCCEEEEEeCceECCEeeeeeEEEEeCCcCCHHHHHHHHHHHHHHHHHHHHhCC-CC
Confidence 9999999999999875 899999999999999999999999999999 699999999999999999999999998 99
Q ss_pred ccchHHHHHHHHHHHcC--------------------CCCcccccccccccCccccCCCcC-CCCCCCCcccCCcEEeeC
Q 006890 475 CGHTLDILARLPLWKYG--------------------LDYRHGTGHGVGSYLNVHEGPQSI-SFKPRNVPIHASMTATDE 533 (627)
Q Consensus 475 ~~~~l~~~a~~~l~~~G--------------------~~~~h~~GHgvG~~l~vhE~P~~~-~~~~~~~~l~~Gmv~siE 533 (627)
++++|+.++++++++.| -.+.|++||||| +++||.|.+. ..+ ++.+|++||||++|
T Consensus 128 ~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GhgiG--l~~~e~p~~~~~~~-~~~~l~~GMv~~iE 204 (243)
T cd01087 128 SYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLG--LDVHDVGGYLRYLR-RARPLEPGMVITIE 204 (243)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCchHhhhhhhhhhhhcCCCCccccC--cccccCccccccCC-CCCCCCCCCEEEEC
Confidence 99999999999987653 247899999999 9999999762 222 67899999999999
Q ss_pred ceeeecC----------ccEEEEeEeeEEecCCc
Q 006890 534 PGYYEDG----------NFGIRLENVLVVTDANT 557 (627)
Q Consensus 534 Pg~y~~~----------~~GvriEd~v~V~~~g~ 557 (627)
||+|.++ .+|+|+||+|+||++|+
T Consensus 205 p~iy~~~~~~~~~~~~~~~g~~ied~v~Vt~~G~ 238 (243)
T cd01087 205 PGIYFIPDLLDVPEYFRGGGIRIEDDVLVTEDGP 238 (243)
T ss_pred CEEEeCCcccccccccceeEEEeeeEEEEcCCcc
Confidence 9999987 79999999999999997
No 20
>PLN03158 methionine aminopeptidase; Provisional
Probab=100.00 E-value=6.3e-41 Score=354.63 Aligned_cols=236 Identities=18% Similarity=0.199 Sum_probs=206.2
Q ss_pred CccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHH
Q 006890 302 SPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFR 381 (627)
Q Consensus 302 ~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~ 381 (627)
+.+...|.|||++||+.||+|++++..++..+++.+ ++|+||.||++.+..+.
T Consensus 129 ~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~i---------------------------rpGvTe~EI~~~v~~~~ 181 (396)
T PLN03158 129 SDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAI---------------------------KPGVTTDEIDRVVHEAT 181 (396)
T ss_pred cccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------cCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999999999887764 79999999999998876
Q ss_pred HhhcCCC----CCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHH
Q 006890 382 ASKEHFR----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTA 457 (627)
Q Consensus 382 ~~~~g~~----~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~ 457 (627)
...+++. ...|+.++++|.|..++|+.|++ ++|++||+|++|+|+.|+||++|++|||++|+++++++++|+.
T Consensus 182 ~~~Ga~ps~l~y~~fp~svcts~N~~i~Hgip~~---r~L~~GDiV~iDvg~~~~GY~aD~tRT~~VG~~~~e~~~l~e~ 258 (396)
T PLN03158 182 IAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDA---RKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKC 258 (396)
T ss_pred HHcCCccccccccCCCceeeecccccccCCCCCC---ccCCCCCEEEEEEeEEECCEEEeEEeEEEcCCCCHHHHHHHHH
Confidence 4443332 23588889999999999999976 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCCCC--CCCcccCCcEEeeCc
Q 006890 458 VLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKP--RNVPIHASMTATDEP 534 (627)
Q Consensus 458 v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~~~--~~~~l~~Gmv~siEP 534 (627)
+++++.+++++++| |++.++|+.++++++.+.|+. +.|.+||||| +.+||.|.+..+.. ...+|+|||||+|||
T Consensus 259 ~~eal~~aI~~vkP-Gv~~~dI~~~i~~~~~~~G~~~v~~~~GHGIG--~~~He~P~i~~~~~~~~~~~l~~GMVfTIEP 335 (396)
T PLN03158 259 TYECLEKAIAIVKP-GVRYREVGEVINRHATMSGLSVVKSYCGHGIG--ELFHCAPNIPHYARNKAVGVMKAGQVFTIEP 335 (396)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHcCCCccCCccCCccc--cccCCCCCCCcccCCCCCCEecCCcEEEECC
Confidence 99999999999998 999999999999999999995 6788999999 99999998854321 236899999999999
Q ss_pred eeee-----------------cCccEEEEeEeeEEecCCcccccCCcceeeeecccc-cccccccc
Q 006890 535 GYYE-----------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITW-APYQIKMI 582 (627)
Q Consensus 535 g~y~-----------------~~~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~-~p~~~~~i 582 (627)
++|. +|.+|+|+||||+||++|+ |.||. .|..+.++
T Consensus 336 ~i~~g~~~~~~~~d~wt~~t~dG~~~aq~E~tvlVTe~G~------------EiLT~~~~~~~~~~ 389 (396)
T PLN03158 336 MINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGV------------EVLTARLPSSPDVF 389 (396)
T ss_pred eeccCcccceecCCCceEEecCCceeeEeeeEEEEeCCcc------------eECCCCCCCCcccc
Confidence 9984 3556889999999999998 88985 66655433
No 21
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-40 Score=328.74 Aligned_cols=238 Identities=27% Similarity=0.369 Sum_probs=207.1
Q ss_pred eEEecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHH
Q 006890 296 KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSD 375 (627)
Q Consensus 296 ~~~~~~~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~ 375 (627)
++..+...+.++|.||||.|++.||+|+.++++++.+.+.. .++...|..+.+
T Consensus 214 ~~~~~~~li~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~---------------------------sr~~~~E~~l~a 266 (488)
T KOG2414|consen 214 TVRPVSNLIERLRLIKSPAELELMREACNIASQTFSETMFG---------------------------SRDFHNEAALSA 266 (488)
T ss_pred ccccHHHHHHHHHccCCHHHHHHHHHHhhhhhHHHHHHHhh---------------------------ccCCcchhhHhh
Confidence 47778899999999999999999999999999987655432 156789999999
Q ss_pred HHHHHHHhhcCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEec-CCCCHHHHHH
Q 006890 376 KLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSAHEKAC 454 (627)
Q Consensus 376 ~l~~~~~~~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~-G~p~~e~~~~ 454 (627)
.++... +..|+.-.+|+|+|+.|.|+..+||..++ ..++++|+||+|.|+.+.||++|+||||++ |+.|+.|+++
T Consensus 267 ~~eye~-r~rGad~~AYpPVVAgG~na~tIHY~~Nn---q~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~L 342 (488)
T KOG2414|consen 267 LLEYEC-RRRGADRLAYPPVVAGGKNANTIHYVRNN---QLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDL 342 (488)
T ss_pred hhhhhe-eecCccccccCCeeecCcccceEEEeecc---cccCCCcEEEEecCcccCceEccceeccCCCCccCcHHHHH
Confidence 998643 35688889999999999999999999876 899999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHHHHhccCC-CCcccchHHHHH----HHHHHHcCC-------------CCcccccccccccCccccCCCcCC
Q 006890 455 YTAVLKGHIALGNAVFP-NGTCGHTLDILA----RLPLWKYGL-------------DYRHGTGHGVGSYLNVHEGPQSIS 516 (627)
Q Consensus 455 y~~v~~~~~~~~~~~~p-~G~~~~~l~~~a----~~~l~~~G~-------------~~~h~~GHgvG~~l~vhE~P~~~~ 516 (627)
|++|+..|...+..++| .|++.++|+... .+.|.+.|. .++|++||=+| |+|||-|.+.
T Consensus 343 YeavL~vq~ecik~c~~~~g~sL~~l~~~s~~Ll~~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLG--mDVHD~p~v~- 419 (488)
T KOG2414|consen 343 YEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIRKTDREEMIQAEKLCPHHVGHYLG--MDVHDCPTVS- 419 (488)
T ss_pred HHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhCcccchHHHHHhhhhcCCcccchhcC--cccccCCCCC-
Confidence 99999999999999985 378889988644 445566665 37899999999 9999999873
Q ss_pred CCCCCCcccCCcEEeeCceeeecCc---------cEEEEeEeeEEecCCcccccCCcceeeeeccc-ccccccccc
Q 006890 517 FKPRNVPIHASMTATDEPGYYEDGN---------FGIRLENVLVVTDANTKFNFGDKGYLSFEHIT-WAPYQIKMI 582 (627)
Q Consensus 517 ~~~~~~~l~~Gmv~siEPg~y~~~~---------~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT-~~p~~~~~i 582 (627)
.+.+|+||||||||||+|.|.. -||||||.|+|+++|+ ++|| .+|.+.+.|
T Consensus 420 ---r~~pL~pg~ViTIEPGvYIP~d~d~P~~FrGIGiRIEDDV~i~edg~------------evLT~a~pKei~~i 480 (488)
T KOG2414|consen 420 ---RDIPLQPGMVITIEPGVYIPEDDDPPEEFRGIGIRIEDDVAIGEDGP------------EVLTAACPKEIIEI 480 (488)
T ss_pred ---CCccCCCCceEEecCceecCccCCCchHhcCceEEeecceEeccCCc------------eeehhcccCCHHHH
Confidence 5688999999999999998753 4999999999999997 8999 588876544
No 22
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00 E-value=8.6e-40 Score=327.66 Aligned_cols=212 Identities=19% Similarity=0.289 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCC------
Q 006890 316 LDGLKKAHIRDGAAIVQYI-IWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFR------ 388 (627)
Q Consensus 316 i~~~r~A~~~~~~a~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~------ 388 (627)
|+++|+|+.+++.+|..++ ..++..+++ ...+||.+++..++..+. ..+..
T Consensus 1 ~~~~~~a~~~~~~~~~~~~~~~~~~~id~---------------------~~~~t~~~l~~~~e~~~~-~~~~~~~~~~~ 58 (243)
T cd01091 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQ---------------------EKKVTHSKLSDKVEKAIE-DKKKYKAKLDP 58 (243)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------cccccHHHHHHHHHHHHh-CchhhhcCCCH
Confidence 4689999999999997554 456655543 234999999999998774 33322
Q ss_pred ---CCcCCcccccCCCc-ccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHH
Q 006890 389 ---GLSFPTISSVGPNA-AIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIA 464 (627)
Q Consensus 389 ---~~~f~~i~~~G~n~-a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~ 464 (627)
+++|+||++||+|+ +++|+.+++ +.+..|++|++|+|+.|+||++|+||||++| |+++|+++|+.+++++.+
T Consensus 59 ~~~~~~y~~iv~sG~~~~~l~h~~~s~---~~~~~~~~vl~d~G~~y~gY~sditRT~~v~-p~~~~~~~y~~~~~a~~~ 134 (243)
T cd01091 59 EQLDWCYPPIIQSGGNYDLLKSSSSSD---KLLYHFGVIICSLGARYKSYCSNIARTFLID-PTSEQQKNYNFLLALQEE 134 (243)
T ss_pred HHcCcccCCeEeECcCcccCCCCCCCc---cccCCCCEEEEEeCcccCCEeecceEEEEcC-CCHHHHHHHHHHHHHHHH
Confidence 68999999999999 899998875 8899999999999999999999999999998 899999999999999999
Q ss_pred HHhccCCCCcccchHHHHHHHHHHHcCC----CCcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceee-ec
Q 006890 465 LGNAVFPNGTCGHTLDILARLPLWKYGL----DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY-ED 539 (627)
Q Consensus 465 ~~~~~~p~G~~~~~l~~~a~~~l~~~G~----~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y-~~ 539 (627)
++++++| |+++++|+.++++++.+.|. .|.|++||||| |++||.|.++..+ ++.+|++||||++|||+| .+
T Consensus 135 ~i~~lkp-G~~~~dv~~~a~~~i~~~~~~~~~~~~~~~GHgiG--le~hE~~~~l~~~-~~~~L~~GMvf~vepGi~~~~ 210 (243)
T cd01091 135 ILKELKP-GAKLSDVYQKTLDYIKKKKPELEPNFTKNLGFGIG--LEFRESSLIINAK-NDRKLKKGMVFNLSIGFSNLQ 210 (243)
T ss_pred HHHHcCC-CCcHHHHHHHHHHHHHHhChhHHHhCcCCcccccC--cccccCccccCCC-CCCCcCCCCEEEEeCCccccc
Confidence 9999998 99999999999999999874 57899999999 9999998766554 678999999999999999 43
Q ss_pred ---------CccEEEEeEeeEEecCCc
Q 006890 540 ---------GNFGIRLENVLVVTDANT 557 (627)
Q Consensus 540 ---------~~~GvriEd~v~V~~~g~ 557 (627)
+.||+||||||+||++|+
T Consensus 211 ~~~~~~~~~~~~gv~ieDtV~Vt~~G~ 237 (243)
T cd01091 211 NPEPKDKESKTYALLLSDTILVTEDEP 237 (243)
T ss_pred CccccCccCCeeEEEEEEEEEEcCCCC
Confidence 378999999999999997
No 23
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00 E-value=1.7e-39 Score=319.96 Aligned_cols=206 Identities=35% Similarity=0.480 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCcc
Q 006890 316 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTI 395 (627)
Q Consensus 316 i~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i 395 (627)
|++||+|+++++.++..+.+.+ ++|+||.|+++.+..... ..|..+.+|+++
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~---------------------------~~G~te~ei~~~~~~~~~-~~g~~~~~~~~~ 52 (208)
T cd01092 1 IELLRKAARIADKAFEELLEFI---------------------------KPGMTEREVAAELEYFMR-KLGAEGPSFDTI 52 (208)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC---------------------------cCCCCHHHHHHHHHHHHH-HcCCCCCCCCcE
Confidence 6799999999999998776543 789999999999988764 456667899999
Q ss_pred cccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 006890 396 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTC 475 (627)
Q Consensus 396 ~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~ 475 (627)
+++|+|+..+|+.|++ ++|++||++.+|+|++|+||++|++||+++|+|+++++++|+.+++++.+++++++| |++
T Consensus 53 v~~g~~~~~~h~~~~~---~~l~~gd~v~id~g~~~~gy~~d~~RT~~~g~~~~~~~~~~~~~~~~~~~~~~~~~p-G~~ 128 (208)
T cd01092 53 VASGPNSALPHGVPSD---RKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKP-GVT 128 (208)
T ss_pred EEECccccccCCCCCC---cCcCCCCEEEEEeeeeECCEeccceeEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCc
Confidence 9999999999999875 899999999999999999999999999999999999999999999999999999997 999
Q ss_pred cchHHHHHHHHHHHcCC--CCcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEEe
Q 006890 476 GHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 476 ~~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
+++|+.++++.+++.|+ +|.|++||||| +.+||.|.+ ..+ ++.+|++||||++||++|.++.+|+|+||+|+||
T Consensus 129 ~~di~~~~~~~~~~~g~~~~~~~~~Gh~iG--~~~~e~p~i-~~~-~~~~l~~gmv~~iep~~~~~~~~g~~~ed~v~vt 204 (208)
T cd01092 129 AKEVDKAARDVIEEAGYGEYFIHRTGHGVG--LEVHEAPYI-SPG-SDDVLEEGMVFTIEPGIYIPGKGGVRIEDDVLVT 204 (208)
T ss_pred HHHHHHHHHHHHHHcCccccCCCCCccccC--cccCcCCCc-CCC-CCCCcCCCCEEEECCeEEecCCCEEEeeeEEEEC
Confidence 99999999999999998 68999999999 999999985 333 6889999999999999999999999999999999
Q ss_pred cCCc
Q 006890 554 DANT 557 (627)
Q Consensus 554 ~~g~ 557 (627)
++|+
T Consensus 205 ~~g~ 208 (208)
T cd01092 205 EDGC 208 (208)
T ss_pred CCCC
Confidence 9984
No 24
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00 E-value=1.1e-38 Score=320.93 Aligned_cols=208 Identities=21% Similarity=0.249 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCC-----CC
Q 006890 316 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFR-----GL 390 (627)
Q Consensus 316 i~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~-----~~ 390 (627)
|+.||+|++++..++..+++.+ ++|+||.|+++.+...... .|.. ..
T Consensus 1 I~~lr~A~~i~~~~~~~~~~~~---------------------------~pG~tE~ev~~~~~~~~~~-~G~~~~~~~~~ 52 (238)
T cd01086 1 IEGMREAGRIVAEVLDELAKAI---------------------------KPGVTTKELDQIAHEFIEE-HGAYPAPLGYY 52 (238)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc---------------------------cCCCCHHHHHHHHHHHHHH-cCCCcccccCC
Confidence 6899999999999998877654 7999999999999876643 3332 23
Q ss_pred cCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccC
Q 006890 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVF 470 (627)
Q Consensus 391 ~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~ 470 (627)
+|++.+++|.|++.+|+.|++ ++|++||++++|+|+.|.||++|++|||++|+|+++++++|+.+++++.+++++++
T Consensus 53 ~~~~~~~~~~~~~~~h~~~~~---~~l~~Gd~v~id~g~~~~GY~ad~~RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (238)
T cd01086 53 GFPKSICTSVNEVVCHGIPDD---RVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVK 129 (238)
T ss_pred CCCcceecCCCCceeCCCCCC---cccCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778899999999999875 89999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCC-CC-CCCcccCCcEEeeCceeee---------
Q 006890 471 PNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISF-KP-RNVPIHASMTATDEPGYYE--------- 538 (627)
Q Consensus 471 p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~-~~-~~~~l~~Gmv~siEPg~y~--------- 538 (627)
| |+++++|+.++++++.+.|+. +.|.+||||| +.+||.|.+... .+ ++.+|++||||++||++|.
T Consensus 130 p-G~~~~~v~~~~~~~~~~~G~~~~~~~~GHgiG--~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~~~~~~~~~~~ 206 (238)
T cd01086 130 P-GNRIGDIGHAIEKYAEKNGYSVVREFGGHGIG--RKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGTYEVVTLP 206 (238)
T ss_pred C-CCCHHHHHHHHHHHHHHcCcceecCccccCCC--CccccCCCcCCccCCCCCCEecCCCEEEEeeEEECCCCceEECC
Confidence 8 999999999999999999994 5788999999 999999987521 12 6789999999999999996
Q ss_pred --------cCccEEEEeEeeEEecCCc
Q 006890 539 --------DGNFGIRLENVLVVTDANT 557 (627)
Q Consensus 539 --------~~~~GvriEd~v~V~~~g~ 557 (627)
+|.+|+|+||+|+||++|+
T Consensus 207 ~~~~~~~~~g~~g~~~edtv~Vte~G~ 233 (238)
T cd01086 207 DGWTVVTKDGSLSAQFEHTVLITEDGP 233 (238)
T ss_pred CCCEEEcCCCCEEEeeeeEEEEcCCcc
Confidence 5778999999999999998
No 25
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=100.00 E-value=1.7e-37 Score=305.65 Aligned_cols=203 Identities=31% Similarity=0.484 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCccc
Q 006890 317 DGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTIS 396 (627)
Q Consensus 317 ~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i~ 396 (627)
|+||+|+++++.++.++++.+ ++|+||.||++.+.+.+....|..+.+|++++
T Consensus 1 e~~R~a~~i~~~~~~~~~~~~---------------------------~~G~te~ei~~~~~~~~~~~~g~~~~~~~~~~ 53 (207)
T PF00557_consen 1 ECMRKAARIADAAMEAAMEAL---------------------------RPGMTEYEIAAAIERAMLRRHGGEEPAFPPIV 53 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------------STTCBHHHHHHHHHHHHHHHTTTTEESSESEE
T ss_pred CHHHHHHHHHHHHHHHHHHHc---------------------------cCCCcHHHHHHHHHHHHHHHcCCCcccCCceE
Confidence 689999999999999998876 78999999999999873345566778999999
Q ss_pred ccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCccc
Q 006890 397 SVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCG 476 (627)
Q Consensus 397 ~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~~ 476 (627)
++|+|+.++|+.|++ ++|++||+|.+|+|++|.||++|++||+++| |+++|+++|+.+++++.+++++++| |+++
T Consensus 54 ~~g~~~~~~~~~~~~---~~l~~gd~v~id~~~~~~gy~~d~~Rt~~~G-~~~~~~~~~~~~~~~~~~~~~~~~p-G~~~ 128 (207)
T PF00557_consen 54 GSGPNTDLPHYTPTD---RRLQEGDIVIIDFGPRYDGYHADIARTFVVG-PTPEQRRAYEAAREALEAAIEALRP-GVTG 128 (207)
T ss_dssp EECCCCGETTTBCCS---SBESTTEEEEEEEEEEETTEEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHHHH-ST-TSBH
T ss_pred ecCCcceecceeccc---eeeecCCcceeeccceeeeeEeeeeeEEEEe-ecccccchhhhhHHHHHhHhhhccc-cccc
Confidence 999999999998864 8999999999999999999999999999999 9999999999999999999999998 9999
Q ss_pred chHHHHHHHHHHHcCC--CCcccccccccccCccccC-CCcCCCCCCCCcccCCcEEeeCceee-ecCccEEEEeEeeEE
Q 006890 477 HTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEG-PQSISFKPRNVPIHASMTATDEPGYY-EDGNFGIRLENVLVV 552 (627)
Q Consensus 477 ~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l~vhE~-P~~~~~~~~~~~l~~Gmv~siEPg~y-~~~~~GvriEd~v~V 552 (627)
++|+.++++.+.+.|+ .+.|.+||||| +.+||. |.+...+ ++.+|++||||++||+++ .++.+|+++||+|+|
T Consensus 129 ~~v~~~~~~~~~~~g~~~~~~~~~GH~iG--~~~~~~~P~i~~~~-~~~~l~~gmv~~iep~~~~~~~~~g~~~ed~v~V 205 (207)
T PF00557_consen 129 SDVYEAVREVLEEYGLEEPYPHGLGHGIG--LEFHEPGPNIARPG-DDTVLEPGMVFAIEPGLYFIPGWGGVRFEDTVLV 205 (207)
T ss_dssp HHHHHHHHHHHHHTTEGEEBTSSSEEEES--SSSSEEEEEESSTT-TSSB--TTBEEEEEEEEEEETTSEEEEEBEEEEE
T ss_pred chhhHHHHHHHHhhcccceeeeccccccc--ccccccceeeeccc-ccceecCCCceeEeeeEEccCCCcEEEEEEEEEE
Confidence 9999999999999998 68999999999 999997 9974233 789999999999999999 678899999999999
Q ss_pred ec
Q 006890 553 TD 554 (627)
Q Consensus 553 ~~ 554 (627)
|+
T Consensus 206 te 207 (207)
T PF00557_consen 206 TE 207 (207)
T ss_dssp ES
T ss_pred Cc
Confidence 96
No 26
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00 E-value=1.2e-35 Score=291.43 Aligned_cols=205 Identities=31% Similarity=0.448 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCcc
Q 006890 316 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTI 395 (627)
Q Consensus 316 i~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i 395 (627)
|+.||+|+++++.++..++..+ +||+||.|+++.+..... ..|. +.+|+++
T Consensus 1 i~~~r~a~~i~~~~~~~~~~~~---------------------------~~G~te~ei~~~~~~~~~-~~g~-~~~~~~~ 51 (207)
T cd01066 1 IARLRKAAEIAEAAMAAAAEAI---------------------------RPGVTEAEVAAAIEQALR-AAGG-YPAGPTI 51 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHC---------------------------cCCCCHHHHHHHHHHHHH-HcCC-CCCCCcE
Confidence 5789999999999998887654 799999999999998764 3444 6788999
Q ss_pred cccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 006890 396 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTC 475 (627)
Q Consensus 396 ~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~ 475 (627)
+++|+|+..+|+.|++ +++++||++++|+|++|.||++|++||+++|+|+++++++|+.+.+++.+++++++| |++
T Consensus 52 v~~g~~~~~~h~~~~~---~~i~~gd~v~~d~g~~~~gy~~d~~rt~~~g~~~~~~~~~~~~~~~~~~~~~~~i~p-G~~ 127 (207)
T cd01066 52 VGSGARTALPHYRPDD---RRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRP-GVT 127 (207)
T ss_pred EEECccccCcCCCCCC---CCcCCCCEEEEEeceeECCCccceeceeEcCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 9999999999999875 899999999999999999999999999999999999999999999999999999998 999
Q ss_pred cchHHHHHHHHHHHcCC--CCcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEEe
Q 006890 476 GHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 476 ~~~l~~~a~~~l~~~G~--~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
+.+|+.++++.+.+.|+ ++.|++||||| +.+||.|.+ ... ++.+|++||||++||++|.++.+|+|+||+|+||
T Consensus 128 ~~ei~~~~~~~~~~~g~~~~~~~~~Gh~iG--~~~~e~~~~-~~~-~~~~l~~gmv~~iep~~~~~~~~g~~~ed~v~vt 203 (207)
T cd01066 128 AEEVDAAAREVLEEHGLGPNFGHRTGHGIG--LEIHEPPVL-KAG-DDTVLEPGMVFAVEPGLYLPGGGGVRIEDTVLVT 203 (207)
T ss_pred HHHHHHHHHHHHHHcCccccCCCCCccccC--cccCCCCCc-CCC-CCCCcCCCCEEEECCEEEECCCcEEEeeeEEEEe
Confidence 99999999999999998 58899999999 999999984 333 6789999999999999999988999999999999
Q ss_pred cCCc
Q 006890 554 DANT 557 (627)
Q Consensus 554 ~~g~ 557 (627)
++|+
T Consensus 204 ~~g~ 207 (207)
T cd01066 204 EDGP 207 (207)
T ss_pred CCCC
Confidence 9874
No 27
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=100.00 E-value=4.7e-35 Score=292.18 Aligned_cols=207 Identities=15% Similarity=0.166 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHh---------hcC
Q 006890 316 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRAS---------KEH 386 (627)
Q Consensus 316 i~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~---------~~g 386 (627)
++.||+|+++++.++..+++++ ++|+||.|++..++.+... ..+
T Consensus 1 ~~~~r~A~~I~~~~~~~~~~~i---------------------------~pG~te~ei~~~~e~~i~~~~~~~~~~~~~g 53 (228)
T cd01089 1 VTKYKTAGQIANKVLKQVISLC---------------------------VPGAKVVDLCEKGDKLILEELGKVYKKEKKL 53 (228)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc---------------------------cCCCcHHHHHHHHHHHHHHhhcccccCcccc
Confidence 3689999999999999887765 7899999998776654432 145
Q ss_pred CCCCcCCcccccCCCcccccccCCC-CccCCCCCCCeEEEeecceecCcccceEEEEecCCCCH-----HHHHHHHHHHH
Q 006890 387 FRGLSFPTISSVGPNAAIMHYSPQS-ETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSA-----HEKACYTAVLK 460 (627)
Q Consensus 387 ~~~~~f~~i~~~G~n~a~~h~~~~~-~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~-----e~~~~y~~v~~ 460 (627)
..+.+|+++++ .|++.+||.|.. .++++|++||+|++|+|+.|+||++|+||||++|+|++ +++++|+.+++
T Consensus 54 ~~g~~~~~~v~--~n~~~~H~~p~~~~~~~~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~~~~~~~~~~~~e 131 (228)
T cd01089 54 EKGIAFPTCIS--VNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHY 131 (228)
T ss_pred cCCCCcCeEec--cCceeecCCCCCCCCCcccCCCCEEEEEEEEEECCEEEEEEEEEEeCCcCccccchHHHHHHHHHHH
Confidence 66789988887 488899999853 24589999999999999999999999999999999885 89999999999
Q ss_pred HHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeeec
Q 006890 461 GHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYED 539 (627)
Q Consensus 461 ~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~ 539 (627)
++.+++++++| |+++++|+.++++.+.+.|+. +...+||++|+++..|+++.. -..+|++||||++||++|.+
T Consensus 132 a~~~~~~~~kp-G~~~~dv~~a~~~~~~~~G~~~~~~~~~h~~g~~~~~~~~~~~-----~~~~l~~gmvf~~ep~~~~~ 205 (228)
T cd01089 132 ALEAALRLLRP-GNQNSDITEAIQKVIVDYGCTPVEGVLSHQLKRVVSSGEGKAK-----LVECVKHGLLFPYPVLYEKE 205 (228)
T ss_pred HHHHHHHHhCC-CCcHHHHHHHHHHHHHHcCCEEecCccccCcCceEecCCCCcc-----chhhccCCcccccceeEccC
Confidence 99999999998 999999999999999999961 222334444434556766542 25679999999999999999
Q ss_pred CccEEEEeEeeEEecCCc
Q 006890 540 GNFGIRLENVLVVTDANT 557 (627)
Q Consensus 540 ~~~GvriEd~v~V~~~g~ 557 (627)
|.+|+|+||||+||++|+
T Consensus 206 g~~~~~~~~Tv~vt~~G~ 223 (228)
T cd01089 206 GEVVAQFKLTVLLTPNGV 223 (228)
T ss_pred CCeEEEEEEEEEEcCCCC
Confidence 999999999999999998
No 28
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.5e-30 Score=253.13 Aligned_cols=222 Identities=24% Similarity=0.323 Sum_probs=189.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHh-----
Q 006890 309 AIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRAS----- 383 (627)
Q Consensus 309 ~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~----- 383 (627)
.+|+++||+.||+|+++...++..+...+ +||+|-.||....+++...
T Consensus 4 ~ikt~~eiek~r~Ag~i~a~~l~~~~~~v---------------------------~pGvtt~Eld~~~~~~i~~~ga~p 56 (255)
T COG0024 4 SIKTPEEIEKMREAGKIAAKALKEVASLV---------------------------KPGVTTLELDEIAEEFIREKGAYP 56 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHHHHHHHcCcee
Confidence 38999999999999999999988776643 7999999999999997753
Q ss_pred -hcCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCC-HHHHHHHHHHHHH
Q 006890 384 -KEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPS-AHEKACYTAVLKG 461 (627)
Q Consensus 384 -~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~-~e~~~~y~~v~~~ 461 (627)
..|+.+..|+ ++..-|-..+||.|+ .+++|++||+|.||+|+.++||.+|.++||.+|+.+ +..+++.+++.++
T Consensus 57 a~~gy~g~~~~--~ciSvNe~v~HgiP~--d~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~ea 132 (255)
T COG0024 57 AFLGYKGFPFP--TCISVNEVVAHGIPG--DKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEA 132 (255)
T ss_pred hhccCcCCCcc--eEeehhheeeecCCC--CCcccCCCCEEEEEEEEEECCeeeeEEEEEECCCCChHHHHHHHHHHHHH
Confidence 2445554443 455578888999998 458999999999999999999999999999999766 4677799999999
Q ss_pred HHHHHhccCCCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCCCC--CCCcccCCcEEeeCceeee
Q 006890 462 HIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKP--RNVPIHASMTATDEPGYYE 538 (627)
Q Consensus 462 ~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~~~--~~~~l~~Gmv~siEPg~y~ 538 (627)
..+++++++| |++..+|-.+..++....|+. ....+||||| ..+||.|++..+.. ...+|+|||||+|||.+..
T Consensus 133 l~~~I~~vkp-G~~l~~Ig~aIq~~~~~~G~~vVr~~~GHgig--~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~ 209 (255)
T COG0024 133 LYAGIEAVKP-GARLGDIGRAIQEYAESRGFSVVRNLTGHGIG--RELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINT 209 (255)
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHHHcCCEEeecccCCccC--cccCCCCeeccccCCCCCcccCCCCEEEEeeEEEc
Confidence 9999999998 999999999999999999983 5667999999 79999999987543 2468999999999998753
Q ss_pred ------------------cCccEEEEeEeeEEecCCcccccCCcceeeeecccccc
Q 006890 539 ------------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAP 576 (627)
Q Consensus 539 ------------------~~~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~~p 576 (627)
++....+.|.||+||++|+ +.||..|
T Consensus 210 G~~~~~~~~~d~Wt~~t~d~~~~aq~EHTv~Vt~~g~------------eilT~~~ 253 (255)
T COG0024 210 GSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIVTEDGC------------EILTLRP 253 (255)
T ss_pred CCCceEecCCCCeEEEeCCCCEEeEEEEEEEEeCCCc------------EEeeCCC
Confidence 2346688999999999998 8888654
No 29
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.97 E-value=2.4e-29 Score=267.20 Aligned_cols=198 Identities=17% Similarity=0.133 Sum_probs=169.5
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhh---
Q 006890 308 KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASK--- 384 (627)
Q Consensus 308 r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~--- 384 (627)
-.+|||+||+.||+|++++..++..+.+++ +||+|+.||+...+++....
T Consensus 11 ~~i~~~~eI~~~r~Aa~Ia~~~l~~~~~~i---------------------------kpG~t~~el~~~~~~~i~~~~a~ 63 (389)
T TIGR00495 11 YSLSNPEVVTKYKMAGEIANNVLKSVVEAC---------------------------SPGAKVVDICEKGDAFIMEETAK 63 (389)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhC---------------------------CCCCCHHHHHHHHHHHHHHhhhh
Confidence 468999999999999999999998887764 79999999999877655321
Q ss_pred ------cCCCCCcCCcccccCCCcccccccCCCC-ccCCCCCCCeEEEeecceecCcccceEEEEecCC-----CCHHHH
Q 006890 385 ------EHFRGLSFPTISSVGPNAAIMHYSPQSE-TCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGK-----PSAHEK 452 (627)
Q Consensus 385 ------~g~~~~~f~~i~~~G~n~a~~h~~~~~~-~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~-----p~~e~~ 452 (627)
.+..+++|+++++ .|...+||.|... +++.|++||+|.||+|++|+||++|++|||++|+ ++++++
T Consensus 64 ~~~~~~~~~~g~afpt~vS--vN~~v~H~~P~~~d~~~~Lk~GDvVkIDlG~~idGY~aD~arTv~vG~~~~~~~t~~~~ 141 (389)
T TIGR00495 64 IFKKEKEMEKGIAFPTCIS--VNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKA 141 (389)
T ss_pred hhcccccccCCCCCCeEEe--cCCeeeCCCCCCCCCCcCcCCCCEEEEEEEEEECCEEEEEEEEEEECCcccccCCHHHH
Confidence 2356789998887 7888999999543 2488999999999999999999999999999995 467899
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC-CCcccccccccccCcccc-CCCcCC-CCC------CCCc
Q 006890 453 ACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHE-GPQSIS-FKP------RNVP 523 (627)
Q Consensus 453 ~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~-~~~h~~GHgvG~~l~vhE-~P~~~~-~~~------~~~~ 523 (627)
+++.++.+|+.+++++++| |++.++|+.++++++.++|+ .+.+.+||||| -.+|| .|.++. +.. ....
T Consensus 142 ~l~~aa~~A~~aai~~vkP-G~~~~dI~~ai~~v~~~~G~~~v~~~~gH~ig--r~~~~g~~~Ii~~~~~~~~~~~~~~~ 218 (389)
T TIGR00495 142 DVIAAAHLAAEAALRLVKP-GNTNTQVTEAINKVAHSYGCTPVEGMLSHQLK--QHVIDGEKVIISNPSDSQKKDHDTAE 218 (389)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHcCCeecCCceeeccc--ceeccCCCeeeecCCccccCCCCCCE
Confidence 9999999999999999997 99999999999999999999 46788999999 77888 776532 211 2467
Q ss_pred ccCCcEEeeCceee
Q 006890 524 IHASMTATDEPGYY 537 (627)
Q Consensus 524 l~~Gmv~siEPg~y 537 (627)
|++|||++|||.+.
T Consensus 219 le~gev~aIEp~vs 232 (389)
T TIGR00495 219 FEENEVYAVDILVS 232 (389)
T ss_pred ecCCCEEEEeeeec
Confidence 99999999999764
No 30
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.97 E-value=1.9e-29 Score=268.98 Aligned_cols=200 Identities=15% Similarity=0.112 Sum_probs=169.4
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHh---
Q 006890 307 AKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRAS--- 383 (627)
Q Consensus 307 ~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~--- 383 (627)
-+..+|++||+.||+|+.++..++..+..++ +||+||.||+..++.....
T Consensus 149 ~~~~~s~~EI~~~R~AaeIa~~vl~~~~~~I---------------------------kpG~se~EIa~~ie~~ir~~~~ 201 (470)
T PTZ00053 149 ELEKLSEEQYQDLRRAAEVHRQVRRYAQSVI---------------------------KPGVKLIDICERIESKSRELIE 201 (470)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------hCCCCHHHHHHHHHHHHHHHHH
Confidence 3344799999999999999999988877665 7899999999998875422
Q ss_pred hcCC-CCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHH
Q 006890 384 KEHF-RGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGH 462 (627)
Q Consensus 384 ~~g~-~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~ 462 (627)
..|. .+.+|++++ +.|.+.+||.|+.+++++|+.||+|.||+|++|+||++|++|||++| +++++++.++.+|+
T Consensus 202 ~~G~~~g~aFPt~v--S~N~~aaH~tP~~gd~~vLk~GDvVkID~G~~vdGYiaD~ArTv~vg---~~~~~L~eAv~eA~ 276 (470)
T PTZ00053 202 ADGLKCGWAFPTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFN---PKYDPLLQATKDAT 276 (470)
T ss_pred hcCCcccCCCCcee--ecCccccCCCCCCCCCcEecCCCeEEEEEeEEECCEEEeEEEEEEeC---HHHHHHHHHHHHHH
Confidence 2243 478999865 47888899999754558999999999999999999999999999997 68899999999999
Q ss_pred HHHHhccCCCCcccchHHHHHHHHHHHcCCC----------CcccccccccccC-ccccCCCcCCCCC-CCCcccCCcEE
Q 006890 463 IALGNAVFPNGTCGHTLDILARLPLWKYGLD----------YRHGTGHGVGSYL-NVHEGPQSISFKP-RNVPIHASMTA 530 (627)
Q Consensus 463 ~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~----------~~h~~GHgvG~~l-~vhE~P~~~~~~~-~~~~l~~Gmv~ 530 (627)
.+++++++| |+++++|+.++++++.++|+. +.|.+||||| + .+|++|.+....+ +..+|++||||
T Consensus 277 ~aaI~~~kp-Gv~~~dI~~AIqevies~G~e~~Gk~f~~k~I~nltGHgIG--~y~iHe~k~iP~v~~~~~~~LeeGmVf 353 (470)
T PTZ00053 277 NTGIKEAGI-DVRLSDIGAAIQEVIESYEVEIKGKTYPIKSIRNLNGHSIG--PYIIHGGKSVPIVKGGENTRMEEGELF 353 (470)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHcCCcccCcccccccccCCcccCCC--CccccCCCcCCeeCCCCCCEecCCCEE
Confidence 999999997 999999999999999999962 3799999999 6 8999665543222 56899999999
Q ss_pred eeCceeeecCcc
Q 006890 531 TDEPGYYEDGNF 542 (627)
Q Consensus 531 siEPg~y~~~~~ 542 (627)
+|||.+. .|.+
T Consensus 354 aIEPf~s-tG~G 364 (470)
T PTZ00053 354 AIETFAS-TGRG 364 (470)
T ss_pred EEcceee-CCCC
Confidence 9999875 4444
No 31
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.97 E-value=2.4e-29 Score=259.29 Aligned_cols=194 Identities=20% Similarity=0.208 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCc
Q 006890 315 ELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPT 394 (627)
Q Consensus 315 Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~ 394 (627)
+|+.||+|++++..++..+++.+ ++|+||.|+++.++..... .| .+++|++
T Consensus 1 ~i~~~r~A~~I~~~~~~~~~~~i---------------------------~pG~se~ei~~~~~~~i~~-~g-~~~afp~ 51 (291)
T PRK08671 1 ELEKYLEAGKIASKVREEAAKLI---------------------------KPGAKLLDVAEFVENRIRE-LG-AKPAFPC 51 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc---------------------------cCCCcHHHHHHHHHHHHHH-cC-CccCCCC
Confidence 58999999999999998877653 7899999999999987743 34 3689999
Q ss_pred ccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCc
Q 006890 395 ISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGT 474 (627)
Q Consensus 395 i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~ 474 (627)
++++|++ .+||.|...+++.|++||+|.+|+|++|+||++|++||+++| ++++++|+++.+|+.+++++++| |+
T Consensus 52 ~vs~n~~--~~H~~p~~~d~~~l~~GDvV~iD~G~~~dGY~aD~arT~~vG---~~~~~l~~a~~~a~~aai~~ikp-G~ 125 (291)
T PRK08671 52 NISINEV--AAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLG---GKYEDLVEASEEALEAAIEVVRP-GV 125 (291)
T ss_pred EEeeCCC--ccCCCCCCCCCcccCCCCEEEEEEeEEECCEEEEEEEEEEeC---hhHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 8887665 479999755568999999999999999999999999999999 47889999999999999999998 99
Q ss_pred ccchHHHHHHHHHHHcCC-CCcccccccccccCccccCCCcCCCCC-CCCcccCCcEEeeCceeeecCccEEE
Q 006890 475 CGHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHEGPQSISFKP-RNVPIHASMTATDEPGYYEDGNFGIR 545 (627)
Q Consensus 475 ~~~~l~~~a~~~l~~~G~-~~~h~~GHgvG~~l~vhE~P~~~~~~~-~~~~l~~Gmv~siEPg~y~~~~~Gvr 545 (627)
++++|+.++++.+.++|+ .+.|.+|||||.| .+||+|.+....+ ++.+|+|||||++||++. .|.+.++
T Consensus 126 ~~~dv~~~i~~vi~~~G~~~~~~~~GHgiG~~-~~he~p~ip~~~~~~~~~le~GmV~aIEp~~t-~G~G~v~ 196 (291)
T PRK08671 126 SVGEIGRVIEETIRSYGFKPIRNLTGHGLERY-ELHAGPSIPNYDEGGGVKLEEGDVYAIEPFAT-DGEGKVV 196 (291)
T ss_pred CHHHHHHHHHHHHHHcCCcccCCCcccCcCCC-cccCCCccCccCCCCCceeCCCCEEEEcceEE-CCCCeEe
Confidence 999999999999999999 5678999999943 7899998643322 578999999999999754 6666554
No 32
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.97 E-value=3.4e-29 Score=258.23 Aligned_cols=198 Identities=15% Similarity=0.120 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcC
Q 006890 313 PVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSF 392 (627)
Q Consensus 313 ~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f 392 (627)
-+||+.||+|+++++.++..+.+++ ++|+||.|+++.++..... .|. .++|
T Consensus 2 ~~~i~~~r~A~~I~~~~~~~~~~~i---------------------------~~G~se~el~~~~e~~~~~-~g~-~~aF 52 (295)
T TIGR00501 2 IERAEKWIEAGKIHSKVRREAADRI---------------------------VPGVKLLEVAEFVENRIRE-LGA-EPAF 52 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC---------------------------cCCCCHHHHHHHHHHHHHH-cCC-CCCC
Confidence 3789999999999999998887764 7999999999999987743 343 3789
Q ss_pred CcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 006890 393 PTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPN 472 (627)
Q Consensus 393 ~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~ 472 (627)
+++++. |...+||.|...+++.|++||+|++|+|++|+||++|++||+++|+ .++++|+++.+|+.+++++++|
T Consensus 53 p~~vs~--n~~~~H~~p~~~d~~~l~~GDvV~iD~G~~~dGY~aD~arT~~vG~---~~~~l~~a~~~A~~aai~~~kP- 126 (295)
T TIGR00501 53 PCNISI--NECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVKAAKDALYTAIKEIRA- 126 (295)
T ss_pred Ccceec--CCEeeCCCCCCCcCccCCCCCEEEEEEeEEECCEEEEEEEEEEeCc---HHHHHHHHHHHHHHHHHHHhcC-
Confidence 998774 6667899997655688999999999999999999999999999995 3689999999999999999998
Q ss_pred CcccchHHHHHHHHHHHcCC-CCcccccccccccCccccCCCcCCCCC-CCCcccCCcEEeeCceeeecCccEEEEe
Q 006890 473 GTCGHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHEGPQSISFKP-RNVPIHASMTATDEPGYYEDGNFGIRLE 547 (627)
Q Consensus 473 G~~~~~l~~~a~~~l~~~G~-~~~h~~GHgvG~~l~vhE~P~~~~~~~-~~~~l~~Gmv~siEPg~y~~~~~GvriE 547 (627)
|+++++|+.++++.+.++|+ .+.|.+|||+|.| .+|++|.+....+ ++.+|++||||++||+ +..|.+.++-+
T Consensus 127 Gv~~~dV~~ai~~vi~~~G~~~i~~~~GHgig~~-~~h~g~~ip~i~~~~~~~le~GmV~aIEP~-~~~G~G~v~~~ 201 (295)
T TIGR00501 127 GVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPY-RLHGGKSIPNVKERDTTKLEEGDVVAIEPF-ATDGVGYVTDG 201 (295)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeecCCCCcceecc-cccCCCccCeecCCCCCEeCCCCEEEEcee-EECCcCeEecC
Confidence 99999999999999999999 5789999999964 6788865422221 5688999999999995 56776655443
No 33
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.96 E-value=3.9e-28 Score=250.31 Aligned_cols=195 Identities=17% Similarity=0.138 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCCCCCcCCcc
Q 006890 316 LDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTI 395 (627)
Q Consensus 316 i~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~~~~~f~~i 395 (627)
++.||+|++++..++.++++.+ ++|+||.|+++.+++.... .| .+++|+++
T Consensus 1 ~~~~r~Aa~I~~~a~~~~~~~i---------------------------~pG~te~ei~~~~~~~i~~-~G-~~~afp~~ 51 (291)
T cd01088 1 LEKYREAGEIHRQVRKYAQSLI---------------------------KPGMTLLEIAEFVENRIRE-LG-AGPAFPVN 51 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc---------------------------cCCCcHHHHHHHHHHHHHH-cC-CCCCCCce
Confidence 3689999999999998887654 7999999999999987643 34 36789876
Q ss_pred cccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 006890 396 SSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTC 475 (627)
Q Consensus 396 ~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~ 475 (627)
+ +.|...+||.|+..+++.|++||+|.+|+|++|+||++|++||+++|+ +++++|+++++|+.+++++++| |++
T Consensus 52 i--s~n~~~~H~~p~~~d~~~l~~GDvV~iD~G~~~dGY~sD~arT~~vg~---~~~~l~ea~~~A~~~ai~~ikP-G~~ 125 (291)
T cd01088 52 L--SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAGP-DVR 125 (291)
T ss_pred e--ccCCEeeCCCCCCCCCcccCCCCEEEEEEEEEECCEEEEEEEEEecCh---hHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 4 467778999998656689999999999999999999999999999984 7889999999999999999998 999
Q ss_pred cchHHHHHHHHHHHcCC-CCcccccccccccCccccCCCcCCCCC-CCCcccCCcEEeeCceeeecCccEEEEe
Q 006890 476 GHTLDILARLPLWKYGL-DYRHGTGHGVGSYLNVHEGPQSISFKP-RNVPIHASMTATDEPGYYEDGNFGIRLE 547 (627)
Q Consensus 476 ~~~l~~~a~~~l~~~G~-~~~h~~GHgvG~~l~vhE~P~~~~~~~-~~~~l~~Gmv~siEPg~y~~~~~GvriE 547 (627)
+++|+.++++.+.++|+ .+.|.+|||||.| .+|++|.+..... ++.+|+|||||++||. +..|.+.++.+
T Consensus 126 ~~dV~~ai~~~i~~~G~~~~~~~~GHgig~~-~~h~~~~ip~~~~~~~~~le~gmV~aIEp~-~s~G~G~v~~~ 197 (291)
T cd01088 126 LGEIGEAIEEVIESYGFKPIRNLTGHSIERY-RLHAGKSIPNVKGGEGTRLEEGDVYAIEPF-ATTGKGYVHDG 197 (291)
T ss_pred HHHHHHHHHHHHHHcCCEEeecCCccCccCc-cccCCCccCccCCCCCCEeCCCCEEEEcee-EECCCCeeecC
Confidence 99999999999999999 5789999999942 6899876533221 5688999999999995 46777777643
No 34
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-27 Score=228.42 Aligned_cols=223 Identities=20% Similarity=0.201 Sum_probs=194.5
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHHHhhcCC
Q 006890 308 KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHF 387 (627)
Q Consensus 308 r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~~~~~g~ 387 (627)
-.|.++++|++||.|++++...+..+... ++||+|..||...+.+.....+.+
T Consensus 114 i~i~~~e~ie~mR~ac~LarevLd~Aa~~---------------------------v~PgvTTdEiD~~VH~a~Ierg~Y 166 (369)
T KOG2738|consen 114 IKILDPEGIEGMRKACRLAREVLDYAATL---------------------------VRPGVTTDEIDRAVHNAIIERGAY 166 (369)
T ss_pred eeccCHHHHHHHHHHHHHHHHHHHHHhhh---------------------------cCCCccHHHHHHHHHHHHHhcCCc
Confidence 45789999999999999999888765444 489999999999998866544444
Q ss_pred C----CCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHHHHHHHHHHHHHHH
Q 006890 388 R----GLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHI 463 (627)
Q Consensus 388 ~----~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e~~~~y~~v~~~~~ 463 (627)
. ...|+-.+++.-|..++|+.|.. |+|+.||++.||....++||+.|..+||++|+.+++.+++-+...++.+
T Consensus 167 PSPLnYy~FPKS~CTSVNEviCHGIPD~---RpLedGDIvNiDVtvY~~GyHGDlneTffvG~Vde~~k~LVkvT~EcL~ 243 (369)
T KOG2738|consen 167 PSPLNYYGFPKSVCTSVNEVICHGIPDS---RPLEDGDIVNIDVTVYLNGYHGDLNETFFVGNVDEKAKKLVKVTRECLE 243 (369)
T ss_pred CCCcccCCCchhhhcchhheeecCCCCc---CcCCCCCEEeEEEEEEeccccCccccceEeeccCHHHHHHHHHHHHHHH
Confidence 2 24788889999999999999986 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCCCC--CCCcccCCcEEeeCceeee--
Q 006890 464 ALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKP--RNVPIHASMTATDEPGYYE-- 538 (627)
Q Consensus 464 ~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~~~--~~~~l~~Gmv~siEPg~y~-- 538 (627)
.+++.++| |+...+|-.+..+...+.|+. ....+||||| --+|-.|.+..+.. ...++++||+|||||.+..
T Consensus 244 kaI~~~kp-Gv~freiG~iI~kha~~~g~sVVr~ycGHGig--~~FH~~PnipHya~n~a~GvM~~G~tFTIEPmit~G~ 320 (369)
T KOG2738|consen 244 KAIAIVKP-GVSFREIGNIIQKHATKNGYSVVRSYCGHGIG--RVFHCAPNIPHYAKNKAPGVMKPGQTFTIEPMITIGT 320 (369)
T ss_pred HHHHHhCC-chhHHHHHHHHHHHhhhcCceeehhhhccccc--cccccCCCchhhcccCCcceeecCceEEeeeeecccc
Confidence 99999998 999999999999999999996 5677999999 66799998866643 2467999999999998864
Q ss_pred ---------------cCccEEEEeEeeEEecCCcccccCCcceeeeeccccc
Q 006890 539 ---------------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWA 575 (627)
Q Consensus 539 ---------------~~~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~~ 575 (627)
+|......|.|++||+.|+ |.||..
T Consensus 321 ~~d~tWPD~WT~vTaDG~~sAQFEhTlLVT~tG~------------EILT~r 360 (369)
T KOG2738|consen 321 WEDITWPDDWTAVTADGKRSAQFEHTLLVTETGC------------EILTKR 360 (369)
T ss_pred cccccCCCCceEEecCCceecceeeEEEEecccc------------eehhcc
Confidence 3566789999999999998 788854
No 35
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=99.92 E-value=5.4e-24 Score=227.99 Aligned_cols=260 Identities=20% Similarity=0.263 Sum_probs=215.5
Q ss_pred eEEecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHH
Q 006890 296 KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYI-IWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVS 374 (627)
Q Consensus 296 ~~~~~~~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~ 374 (627)
..+|++-.+..+-++|++.||+.+|.|+..+...|.+++ ..+..++++ ...+|...+.
T Consensus 123 n~vDis~~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~---------------------ekkvthskLs 181 (960)
T KOG1189|consen 123 NKVDISLGLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDE---------------------EKKVTHSKLS 181 (960)
T ss_pred ceeehhhhhhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------cchhhhHHHH
Confidence 578888889999999999999999999999999998654 344555554 4567888888
Q ss_pred HHHHHHHHhh-------cCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCC
Q 006890 375 DKLESFRASK-------EHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKP 447 (627)
Q Consensus 375 ~~l~~~~~~~-------~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p 447 (627)
..++.+.... +.....+|+||++||.+..+-....++ +..| + ++++.+|++|++||++++||+.+ .|
T Consensus 182 D~~e~~I~~~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~sa~s~--~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dp 255 (960)
T KOG1189|consen 182 DLMESAIEDKKYSPGLDPDLLDMCYPPIIQSGGKYDLKPSAVSD--DNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DP 255 (960)
T ss_pred HHHHHHhhccccCcccCccccccccChhhhcCCccccccccccc--cccc--c-eEEeeccchhhhhhccccceeee-cc
Confidence 8877655321 112457999999999998763333332 3566 3 99999999999999999999999 49
Q ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC----CCcccccccccccCccccCCCcCCCCCCCCc
Q 006890 448 SAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL----DYRHGTGHGVGSYLNVHEGPQSISFKPRNVP 523 (627)
Q Consensus 448 ~~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~----~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~ 523 (627)
+.+|.+.|+.++.+|.+++..++| |+..++||..+-.++.+.+. ++....|.||| |+..|.-.+++.+ ++.+
T Consensus 256 ssemq~nY~fLl~aqe~il~~lrp-G~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~~iG--lEFREssl~inaK-nd~~ 331 (960)
T KOG1189|consen 256 SSEMQENYEFLLAAQEEILKLLRP-GTKIGDVYEKALDYVEKNKPELVPNFTKNLGFGIG--LEFRESSLVINAK-NDRV 331 (960)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHhcCcchhhhhhhhcccccc--eeeeccccccccc-chhh
Confidence 999999999999999999999998 99999999999999999987 57788999999 9999999988876 8899
Q ss_pred ccCCcEEeeCceeee------cCccEEEEeEeeEEecCCcccccCCcceeeeecccccccccccccccCCCHHHHHHHHH
Q 006890 524 IHASMTATDEPGYYE------DGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIKMINLKSLTPEEIDWLNA 597 (627)
Q Consensus 524 l~~Gmv~siEPg~y~------~~~~GvriEd~v~V~~~g~~~~~~~~~~~~fe~lT~~p~~~~~i~~~~l~~~e~~~ln~ 597 (627)
|++||||.|.-|+-. .+.|.+-|.|||+|+++++. +.||.++...+-+.+..-.++|=+=++.
T Consensus 332 lk~gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e~~p~-----------~vLT~~~K~~~dv~~~f~~eeeE~~~~~ 400 (960)
T KOG1189|consen 332 LKKGMVFNISLGFSNLTNPESKNSYALLLSDTVLVGEDPPA-----------EVLTDSAKAVKDVSYFFKDEEEEEELEK 400 (960)
T ss_pred hccCcEEEEeeccccccCcccccchhhhccceeeecCCCcc-----------hhhcccchhhcccceeeccchhhhhhhh
Confidence 999999999988863 24689999999999999973 8899988888888887776555444443
No 36
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.81 E-value=6.7e-19 Score=185.36 Aligned_cols=232 Identities=15% Similarity=0.160 Sum_probs=183.3
Q ss_pred eEEecCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHH
Q 006890 296 KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSD 375 (627)
Q Consensus 296 ~~~~~~~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~ 375 (627)
..+|++.-+..|-.+|+..||+.+|.+.+.++..|.-+...++..++. .-.+|...+..
T Consensus 156 N~~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~---------------------~~kit~~KlsD 214 (1001)
T COG5406 156 NASDVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDG---------------------AFKITHGKLSD 214 (1001)
T ss_pred chhhhhhhhhHHhccccHHHHhhccccchHHHHHHHHHHHHHHHHHhh---------------------hhhhccchHHH
Confidence 567888889999999999999999999999998888666666555543 23456666666
Q ss_pred HHHHHH------Hhh---c-----CCCCCcCCcccccCCCccc-ccccCCCCccCCCCCCCeEEEeecceecCcccceEE
Q 006890 376 KLESFR------ASK---E-----HFRGLSFPTISSVGPNAAI-MHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITR 440 (627)
Q Consensus 376 ~l~~~~------~~~---~-----g~~~~~f~~i~~~G~n~a~-~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tR 440 (627)
.++... ... - .-..++|.||++||....+ |..... +..+ .||+|++.+|.+|++||++++|
T Consensus 215 ~mes~iddv~f~q~~s~~l~~~~~d~lew~ytpiiqsg~~~Dl~psa~s~---~~~l-~gd~vl~s~GiRYn~YCSn~~R 290 (1001)
T COG5406 215 LMESLIDDVEFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSIDLTPSAFSF---PMEL-TGDVVLLSIGIRYNGYCSNMSR 290 (1001)
T ss_pred HhhhhcchhhhhhhcCccccccchhhhhhhcchhhccCceeecccccccC---chhh-cCceEEEEeeeeeccccccccc
Confidence 665421 110 0 1135789999999987654 222222 2555 5679999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC----CCcccccccccccCccccCCCcCC
Q 006890 441 TFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL----DYRHGTGHGVGSYLNVHEGPQSIS 516 (627)
Q Consensus 441 T~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~----~~~h~~GHgvG~~l~vhE~P~~~~ 516 (627)
|+.+. |+.||.+.|..++.+|..+...++| |+...+|+..+..++.+.|. +|...+|-+|| ++.++.-.+..
T Consensus 291 T~l~d-p~~e~~~Ny~fl~~lQk~i~~~~rp-G~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~ig--iefR~s~~~~n 366 (1001)
T COG5406 291 TILTD-PDSEQQKNYEFLYMLQKYILGLVRP-GTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIG--IEFRSSQKPFN 366 (1001)
T ss_pred eEEeC-CchHhhhhHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHhcCCccCchHhhhhhhhcc--cccccccccee
Confidence 99995 9999999999999999999999997 99999999999999999887 57788999999 99888666555
Q ss_pred CCCCCCcccCCcEEeeCceeee------cCccEEEEeEeeEEecCCc
Q 006890 517 FKPRNVPIHASMTATDEPGYYE------DGNFGIRLENVLVVTDANT 557 (627)
Q Consensus 517 ~~~~~~~l~~Gmv~siEPg~y~------~~~~GvriEd~v~V~~~g~ 557 (627)
.. ++++|++||+|.+.-|+-. ...|...+-||+-|+-+.+
T Consensus 367 vk-n~r~lq~g~~fnis~gf~nl~~~~~~Nnyal~l~dt~qi~ls~p 412 (1001)
T COG5406 367 VK-NGRVLQAGCIFNISLGFGNLINPHPKNNYALLLIDTEQISLSNP 412 (1001)
T ss_pred cc-CCceeccccEEEEeecccccCCCCcccchhhhhccceEeecCCc
Confidence 44 7799999999999988753 2468888888888877664
No 37
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=99.65 E-value=5.2e-16 Score=140.98 Aligned_cols=126 Identities=24% Similarity=0.365 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCcCccCcCcccccccccccc---ccCceEEE-EeCCceEEEEc-chhHHHHhccc
Q 006890 4 ILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGF---TGSAGLAL-ITMNEALLWTD-GRYFLQATQEL 78 (627)
Q Consensus 4 Rl~~Lr~~m~~~~~~~Da~li~~~d~h~sey~~~~~~~~~ylTGF---tgs~g~~v-vt~~~a~l~tD-~RY~~qA~~~~ 78 (627)
|+++||+.|+++| +|++||+++ .|++||||| +++.++++ |+.++++||+| ++|..+++...
T Consensus 1 Rl~rl~~~m~~~g--id~lll~~~------------~ni~YltG~~~~~~~~~~~l~i~~~~~~l~~~~~~~~~~~~~~~ 66 (132)
T PF01321_consen 1 RLERLRAAMAEAG--IDALLLTSP------------ENIRYLTGFRWQPGERPVLLVITADGAVLFVPKGEYERAAEESA 66 (132)
T ss_dssp HHHHHHHHHHHTT---SEEEEESH------------HHHHHHHS--ST-TSSEEEEEEESSSEEEEEEGGGHHHHHHHHT
T ss_pred CHHHHHHHHHHCC--CCEEEEcCh------------hhceEecCCCcCCCcceEEEEecccCcEEEeccccHHHHHHhhc
Confidence 8999999999998 999999999 899999999 88888877 89999999999 88888887762
Q ss_pred cCcEEEEEcCC-CCCHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHHHHhcCCeEEecCcChhhHhhhc
Q 006890 79 TGEWKLMRMLE-DPAVDVWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKN 147 (627)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~~l~~~l~~~~~vg~d~~~~s~~~~~~l~~~l~~~~~~l~~~~~~lid~lr~~ 147 (627)
.. .+++.+.+ .+.+.++|++.+.+.++||+|++.+|+..++.|++.++ +.++++. +++|+++|++
T Consensus 67 ~~-~~v~~~~~~~~~~~~~l~~~~~~~~~igve~~~~~~~~~~~l~~~~~--~~~~v~~-~~~i~~~R~I 132 (132)
T PF01321_consen 67 PD-DEVVEYEDPYEAIAEALKKLGPEGKRIGVEPDSLSAAEYQRLQEALP--GAEFVDA-SPLIEELRMI 132 (132)
T ss_dssp TS-SEEEEESTHHHHHHHHHHHHTTTTSEEEEETTTSBHHHHHHHHHHST--TSEEEEE-HHHHHHHHTS
T ss_pred CC-ceEEEEecccchHHHHHHHhCCCCCEEEEcCCcChHHHHHHHHHhCC--CCEEEEc-HHHHHHcCcC
Confidence 22 34454444 34567888888877799999999999999999999884 4699998 8899999974
No 38
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=99.64 E-value=4.5e-15 Score=159.91 Aligned_cols=135 Identities=16% Similarity=0.211 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHhcCCCCceEEEEcCCCCcCccCcCccccccccccccccCc----eEEEEeCC-ceEEEEcchhHHHHh
Q 006890 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSA----GLALITMN-EALLWTDGRYFLQAT 75 (627)
Q Consensus 1 ~~~Rl~~Lr~~m~~~~~~~Da~li~~~d~h~sey~~~~~~~~~ylTGFtgs~----g~~vvt~~-~a~l~tD~RY~~qA~ 75 (627)
|.+|+++||+.|++++ +|++||+++ .|++|||||+++. ..+||+.+ +.+|+++.++..+++
T Consensus 11 ~~~Rl~rl~~~m~~~~--lDalli~~~------------~ni~YltG~~~~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~ 76 (391)
T TIGR02993 11 YQARLDKTRAAMEARG--IDLLIVTDP------------SNMAWLTGYDGWSFYVHQCVLLPPEGEPIWYGRGQDANGAK 76 (391)
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEcCc------------ccceeeccCCCCceEEEEEEEEcCCCceEEEehhhhhhhHh
Confidence 4679999999999987 999999999 8999999999854 35667755 467777766666666
Q ss_pred ccccC-cEEEEEcC------CCCCHHHHHHhhCCC----CCEEEEcCCC--CCHHHHHHHHHHHHhcCCeEEecCcChhh
Q 006890 76 QELTG-EWKLMRML------EDPAVDVWMANNLPN----DAAIGVDPWC--VSIDTAQRWERAFAKKQQKLVQTSTNLVD 142 (627)
Q Consensus 76 ~~~~~-~~~~~~~~------~~~~~~~~l~~~l~~----~~~vg~d~~~--~s~~~~~~l~~~l~~~~~~l~~~~~~lid 142 (627)
.+... .-.+..+. ..+...+++.+.+++ .++||+|.+. +|+..+..|++.++ ++++++. +.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~e~~~~~~~~~~~~~l~~~l~--~~~~~d~-~~~~~ 153 (391)
T TIGR02993 77 RTAFMDHDNIVGYPDHYVQSTERHPMDYLSEILQDRGWDSLTIGVEMDNYYFSAAAFASLQKHLP--NARFVDA-TALVN 153 (391)
T ss_pred heeeccccceeecccccccCCCCCHHHHHHHHHHhcCCCCCcEEEecCCCccCHHHHHHHHHhCC--CCEEEeh-HHHHH
Confidence 44311 00111111 112233455554432 2479999774 89999999998874 4789988 88999
Q ss_pred HhhhcCCCCC
Q 006890 143 KVWKNRPPVE 152 (627)
Q Consensus 143 ~lr~~k~~~e 152 (627)
++|.+|++.|
T Consensus 154 ~lR~iKs~~E 163 (391)
T TIGR02993 154 WQRAVKSETE 163 (391)
T ss_pred HHHccCCHHH
Confidence 9999999998
No 39
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=99.58 E-value=5.2e-14 Score=151.62 Aligned_cols=329 Identities=19% Similarity=0.247 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCcCccCcCcccccccccccccc--Cc--eEEEEeCCc-eEEEEcchhHHHHhc
Q 006890 2 AEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTG--SA--GLALITMNE-ALLWTDGRYFLQATQ 76 (627)
Q Consensus 2 ~~Rl~~Lr~~m~~~~~~~Da~li~~~d~h~sey~~~~~~~~~ylTGFtg--s~--g~~vvt~~~-a~l~tD~RY~~qA~~ 76 (627)
..|+.+++..|.+++ +|+++++++ .|++|+|||+. .. ..++++.++ +.|+++++|..++..
T Consensus 11 ~~rl~~~~~~~~~~~--~~~~~~~~~------------~n~~yltg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 76 (384)
T COG0006 11 RARLARLRELMEEAG--LDALLLTSP------------SNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRGRDEEAAKE 76 (384)
T ss_pred HHHHHHHHHHHHHcC--CcEEEecCC------------CceEEEeCCCCCcccceEEEEEcCCCceEEEEcchhHHHHHh
Confidence 468999999999987 999999999 99999999994 33 355666654 999999999999988
Q ss_pred cccC---cEEEEEcCCCCC-HHHHHHhhCCC----CCEEEEcCCC--CCHHHHHHHHHHHHhcCCeEEecCcChhhHhhh
Q 006890 77 ELTG---EWKLMRMLEDPA-VDVWMANNLPN----DAAIGVDPWC--VSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWK 146 (627)
Q Consensus 77 ~~~~---~~~~~~~~~~~~-~~~~l~~~l~~----~~~vg~d~~~--~s~~~~~~l~~~l~~~~~~l~~~~~~lid~lr~ 146 (627)
.... ++..+.....+. ..+.+...+.. ...+|++... +++..+..++..++. .++++. +++++++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~--~~~~~~-~~~i~~lR~ 153 (384)
T COG0006 77 TSWIKLENVEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTLAAFERLQAALPR--AELVDA-SDLVDRLRL 153 (384)
T ss_pred hcccccCceEEEecCCccccHHHHHHHHHHhccccccceEEEeccCccCHHHHHHHHhhCCC--CEEecc-HHHHHHHHh
Confidence 7752 355554443322 22333333322 3679999875 899999999988754 388988 899999999
Q ss_pred cCCCCCCCccccccccccCCcHHHHHHHHHHHhhccCCcEEEEecCCccceEEccccCCCCCCcceeEEEEEECCceEEE
Q 006890 147 NRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLY 226 (627)
Q Consensus 147 ~k~~~e~~~i~~~~~~~~G~~~~~ri~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d~~~~P~~~a~~lv~~~~~~L~ 226 (627)
+|++.| |+.+|++++.. +..+.... .|+- ..
T Consensus 154 iKs~~E-------------------I~~ir~A~~i~--~~a~~~~~---~~~~-------------------------~g 184 (384)
T COG0006 154 IKSPAE-------------------IAKIRKAAEIA--DAALEAAL---EAIR-------------------------PG 184 (384)
T ss_pred cCCHHH-------------------HHHHHHHHHHH--HHHHHHHH---Hhcc-------------------------CC
Confidence 999998 99999988652 22221111 1110 13
Q ss_pred EeCCCCCHHHHHhhhhCCeEEeeCCchhHHHHHHhhccCCC--CCCC-----CCCCEEEEcCCCCcHHHHhhcCCCeEEe
Q 006890 227 VDKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNP--PADV-----QGSDLIWADPNSCSYALYSKLNSDKVLL 299 (627)
Q Consensus 227 v~~~~~~~~~~~~l~~~~v~v~~y~~~~~~~~~~~~~~l~~--~~~~-----~~~~~I~iD~~~~~~~~~~~l~~~~~~~ 299 (627)
+++.++...+...+...|.+..+|+.+ +++|.+.+ |..+ ..++.|.+|.+..-.....-+ ...+.
T Consensus 185 ~tE~ev~a~l~~~~~~~G~~~~sf~~i------v~~G~n~a~pH~~~~~~~~~~gd~vliD~G~~~~gY~sDi--TRT~~ 256 (384)
T COG0006 185 MTEAEIAAELEYALRKGGAEGPSFDTI------VASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDI--TRTFP 256 (384)
T ss_pred CcHHHHHHHHHHHHHHcCCCccCcCcE------EeccccccCcCCCCCcccccCCCEEEEEeeeEECCccccc--eeEEe
Confidence 467777777887777788777788888 67777766 4322 468899999874321111101 01122
Q ss_pred cCCccchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHH
Q 006890 300 QQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLES 379 (627)
Q Consensus 300 ~~~~i~~~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~ 379 (627)
...|-..+ |+...+.-.|+.+.++.+ +||++=.++.....+
T Consensus 257 ~G~~~~~~------------~~iy~~V~~aq~aa~~~~---------------------------rpG~~~~~vd~~ar~ 297 (384)
T COG0006 257 IGKPSDEQ------------REIYEAVLEAQEAAIAAI---------------------------RPGVTGGEVDAAARQ 297 (384)
T ss_pred cCCCCHHH------------HHHHHHHHHHHHHHHHHh---------------------------CCCCcHHHHHHHHHH
Confidence 22222222 244555555555555543 799999999998888
Q ss_pred HHHhhcCCCCCcCC--cccccCCCcccccccCC---CCccCCCCCCCeEEEeecceecC-cccceEEEEecCC
Q 006890 380 FRASKEHFRGLSFP--TISSVGPNAAIMHYSPQ---SETCAEMDPNSIYLCDSGAQYQD-GTTDITRTFHFGK 446 (627)
Q Consensus 380 ~~~~~~g~~~~~f~--~i~~~G~n~a~~h~~~~---~~~~~~l~~gd~vliD~g~~y~g-y~~D~tRT~~~G~ 446 (627)
...+ .|+ +..|. +--+.| ..--.|=.|. ...+..|++|-++.+..|..+.| +-.-+.-++++.+
T Consensus 298 ~i~~-~g~-~~~~~h~~GHgvG-~~l~vhE~p~~~~~~~~~~L~~GMv~t~Epg~y~~g~~GirIEd~vlVte 367 (384)
T COG0006 298 VLEK-AGY-GLYFLHGTGHGVG-FVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGIYIPGGGGVRIEDTVLVTE 367 (384)
T ss_pred HHHh-cCC-cccccCCccccCC-CCcccCcCccccCCCCCccccCCcEEEeccccccCCCceEEEEEEEEEcC
Confidence 7643 222 22222 112223 1122454442 33458999999999999966654 5678888998865
No 40
>PRK14575 putative peptidase; Provisional
Probab=99.47 E-value=1.3e-12 Score=141.30 Aligned_cols=132 Identities=14% Similarity=0.230 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCcCccCcCccccccccccccccCc---------eEEEEeCC-c-eE-EEEcchhH
Q 006890 4 ILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSA---------GLALITMN-E-AL-LWTDGRYF 71 (627)
Q Consensus 4 Rl~~Lr~~m~~~~~~~Da~li~~~d~h~sey~~~~~~~~~ylTGFtgs~---------g~~vvt~~-~-a~-l~tD~RY~ 71 (627)
-+++||+.|+++| +|+++|+++ .|++|||||.+.. ..+||+.+ + +. ++++..+.
T Consensus 12 ~~~rlr~~m~~~g--lD~lvl~~p------------~n~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~i~p~~E~ 77 (406)
T PRK14575 12 VSRKLRTIMERDN--IDAVIVTTC------------DNFYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLIIMNEFEA 77 (406)
T ss_pred HHHHHHHHHHHcC--CCEEeecCc------------chheeecccccccceecccCCceEEEEEcCCCCCceEEechhhh
Confidence 4679999999998 999999999 8999999998743 34788877 3 34 88888888
Q ss_pred HHHhccccC----cEEEEEcCCCCC-----------------HH---HHHHhhC----CCCCEEEEcCCCCCHHHHHHHH
Q 006890 72 LQATQELTG----EWKLMRMLEDPA-----------------VD---VWMANNL----PNDAAIGVDPWCVSIDTAQRWE 123 (627)
Q Consensus 72 ~qA~~~~~~----~~~~~~~~~~~~-----------------~~---~~l~~~l----~~~~~vg~d~~~~s~~~~~~l~ 123 (627)
..++.+... .+..+...++|. .. +.+++.+ ..+++||+|.+.++...++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~igve~~~~~~~~~~~l~ 157 (406)
T PRK14575 78 ASLTLDMPNAELKTFPVWVDVDDPFNMRDSANNNKERPIGPPIESVCNILKDALNDARVLNKKIAIDLNIMSNGGKRVID 157 (406)
T ss_pred hhhcccccccccccCCceEeeeccccccchhhhhhcCCCCCCHHHHHHHHHHHHHhcCCcCCEEEEccCCCCHHHHHHHH
Confidence 888754321 123333322221 01 1333333 2457999999999999999998
Q ss_pred HHHHhcCCeEEecCcChhhHhhhcCCCCC
Q 006890 124 RAFAKKQQKLVQTSTNLVDKVWKNRPPVE 152 (627)
Q Consensus 124 ~~l~~~~~~l~~~~~~lid~lr~~k~~~e 152 (627)
..++ +.++++. +++++++|.+|++.|
T Consensus 158 ~~lp--~~~~~d~-~~~l~~lR~iKs~~E 183 (406)
T PRK14575 158 AVMP--NVDFVDS-SSIFNELRVIKSPWE 183 (406)
T ss_pred HhCC--CCeEEEc-HHHHHHHHhcCCHHH
Confidence 8774 4789988 889999999999998
No 41
>PRK14576 putative endopeptidase; Provisional
Probab=99.34 E-value=2.6e-11 Score=131.23 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCcCccCcCccccccccccccccC-------ce--EEEEeCC-c--eEEEEcchhHHH
Q 006890 6 AALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGS-------AG--LALITMN-E--ALLWTDGRYFLQ 73 (627)
Q Consensus 6 ~~Lr~~m~~~~~~~Da~li~~~d~h~sey~~~~~~~~~ylTGFtgs-------~g--~~vvt~~-~--a~l~tD~RY~~q 73 (627)
+++|+.|+++| +|++|++++ .|++|||||+.. .+ ++|++.+ + ..++++.-....
T Consensus 14 ~r~r~~M~~~g--ldalll~~p------------~ni~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~i~~~~e~~~ 79 (405)
T PRK14576 14 RKARVVMEREG--IDALVVTVC------------DNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEFEAAS 79 (405)
T ss_pred HHHHHHHHHcC--CCEEEeccc------------cceeeeccccccceeeeccCCeEEEEecCCCCCCcEEEechhhhhh
Confidence 48999999998 999999999 899999999965 12 2333345 3 367887776666
Q ss_pred Hhcccc----CcEEEEEcCCCCC--H-----------------HHHHHhhCC----CCCEEEEcCCCCCHHHHHHHHHHH
Q 006890 74 ATQELT----GEWKLMRMLEDPA--V-----------------DVWMANNLP----NDAAIGVDPWCVSIDTAQRWERAF 126 (627)
Q Consensus 74 A~~~~~----~~~~~~~~~~~~~--~-----------------~~~l~~~l~----~~~~vg~d~~~~s~~~~~~l~~~l 126 (627)
++.... ..+..+...++|. + .+.+++.+. .+++||+|.+.++...+..|+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~rigve~~~~~~~~~~~l~~~~ 159 (405)
T PRK14576 80 THFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDAGVLDKTIAIELQAMSNGGKGVLDKVA 159 (405)
T ss_pred hhccccccccccCCceEeecCCcccchhhhccccCCCCcHHHHHHHHHHHHHHhCCCCCEEEEccCCCCHHHHHHHHhhC
Confidence 652210 0122222222221 1 122333332 346999999889999998888776
Q ss_pred HhcCCeEEecCcChhhHhhhcCCCCC
Q 006890 127 AKKQQKLVQTSTNLVDKVWKNRPPVE 152 (627)
Q Consensus 127 ~~~~~~l~~~~~~lid~lr~~k~~~e 152 (627)
.+.++++. +++++++|.+|++.|
T Consensus 160 --~~~~~vd~-~~~l~~lR~iKs~~E 182 (405)
T PRK14576 160 --PGLKLVDS-TALFNEIRMIKSPWE 182 (405)
T ss_pred --CCCeEEEc-HHHHHHHHcCCCHHH
Confidence 34789988 789999999999998
No 42
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=99.22 E-value=2.2e-10 Score=112.40 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=128.2
Q ss_pred CCCCcCHHHHHHHHHHHHH----hhcCCCCCcCCcccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceE
Q 006890 364 GTVKLTEVTVSDKLESFRA----SKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDIT 439 (627)
Q Consensus 364 ~~~g~tE~ei~~~l~~~~~----~~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~t 439 (627)
++||||-.||...|+..-. ..+-..|..|||-++ -|.+..||+|+.+...+|+.+|+..||+|.+.+|-..|.+
T Consensus 106 ikPGmtm~ei~e~iEnttR~li~e~gl~aGi~FPtG~S--lN~cAAHyTpNaGd~tVLqydDV~KiDfGthi~GrIiDsA 183 (397)
T KOG2775|consen 106 IKPGMTMIEICETIENTTRKLILENGLNAGIGFPTGCS--LNHCAAHYTPNAGDKTVLKYDDVMKIDFGTHIDGRIIDSA 183 (397)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHhccccccccCCCccc--ccchhhhcCCCCCCceeeeecceEEEeccccccCeEeeee
Confidence 4899999999999986321 223345789998766 5666689999988778999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC----------CCcccccccccccCccc
Q 006890 440 RTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL----------DYRHGTGHGVGSYLNVH 509 (627)
Q Consensus 440 RT~~~G~p~~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~----------~~~h~~GHgvG~~l~vh 509 (627)
.|+.|. |....+..+|.+|....+...-- .++..+|-+++.+++..+-. ....-.||+|+.| .+|
T Consensus 184 FTv~F~---p~~d~Ll~AvreaT~tGIkeaGi-DvRlcdiG~aiqEVmeSyEvEi~Gk~~~VKpIrnLnGHSI~~y-rIH 258 (397)
T KOG2775|consen 184 FTVAFN---PKYDPLLAAVREATNTGIKEAGI-DVRLCDIGEAIQEVMESYEVEINGKTYQVKPIRNLNGHSIAQY-RIH 258 (397)
T ss_pred eEEeeC---ccccHHHHHHHHHHhhhhhhcCc-eeeehhhhHHHHHHhhheEEEeCCceecceeccccCCCcccce-Eee
Confidence 999984 44556778888888888777653 67889999999999988754 2456689999987 678
Q ss_pred cCCCcC--CCCCCCCcccCCcEEeeCc
Q 006890 510 EGPQSI--SFKPRNVPIHASMTATDEP 534 (627)
Q Consensus 510 E~P~~~--~~~~~~~~l~~Gmv~siEP 534 (627)
-+-.+. ..+ ....+++|.+++||.
T Consensus 259 ~gksVPiVkgg-e~trmee~e~yAIET 284 (397)
T KOG2775|consen 259 GGKSVPIVKGG-EQTRMEEGEIYAIET 284 (397)
T ss_pred cCcccceecCC-cceeecCCeeEEEEe
Confidence 653331 122 678899999999995
No 43
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=99.17 E-value=5.8e-11 Score=107.65 Aligned_cols=127 Identities=18% Similarity=0.276 Sum_probs=91.6
Q ss_pred HHHHHHHHhhccCCcEEEEecCCccceEEccccCCCCCCcceeEEEE-EECCceEEEEeCCCCCHHHHHhhhhCCeEEee
Q 006890 171 KLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAI-VTTNAAFLYVDKRKVSSEVISFLKESGVEVRD 249 (627)
Q Consensus 171 ri~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d~~~~P~~~a~~l-v~~~~~~L~v~~~~~~~~~~~~l~~~~v~v~~ 249 (627)
|++++|++|++.|+|++++++++|+.||||++ +.|...++++ ++.++.+++++..+......+. ....++..
T Consensus 1 Rl~rl~~~m~~~gid~lll~~~~ni~YltG~~-----~~~~~~~~~l~i~~~~~~l~~~~~~~~~~~~~~--~~~~~v~~ 73 (132)
T PF01321_consen 1 RLERLRAAMAEAGIDALLLTSPENIRYLTGFR-----WQPGERPVLLVITADGAVLFVPKGEYERAAEES--APDDEVVE 73 (132)
T ss_dssp HHHHHHHHHHHTT-SEEEEESHHHHHHHHS-------ST-TSSEEEEEEESSSEEEEEEGGGHHHHHHHH--TTSSEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEcChhhceEecCCC-----cCCCcceEEEEecccCcEEEeccccHHHHHHhh--cCCceEEE
Confidence 79999999999999999999999999999997 2223334555 7888878899866554443332 35788899
Q ss_pred CCchhHHHHHHhhccCCCCCCCCCCCEEEEcCCCCcHHHHhhc----CCCeEEecCCccchhhhc
Q 006890 250 YDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKL----NSDKVLLQQSPLALAKAI 310 (627)
Q Consensus 250 y~~~~~~~~~~~~~~l~~~~~~~~~~~I~iD~~~~~~~~~~~l----~~~~~~~~~~~i~~~r~i 310 (627)
|.+..+.+..+....+. .+++||+|.+.+|+..++.| ++.+++++++++..+|+|
T Consensus 74 ~~~~~~~~~~~l~~~~~------~~~~igve~~~~~~~~~~~l~~~~~~~~~v~~~~~i~~~R~I 132 (132)
T PF01321_consen 74 YEDPYEAIAEALKKLGP------EGKRIGVEPDSLSAAEYQRLQEALPGAEFVDASPLIEELRMI 132 (132)
T ss_dssp ESTHHHHHHHHHHHHTT------TTSEEEEETTTSBHHHHHHHHHHSTTSEEEEEHHHHHHHHTS
T ss_pred EecccchHHHHHHHhCC------CCCEEEEcCCcChHHHHHHHHHhCCCCEEEEcHHHHHHcCcC
Confidence 88833333333332221 34899999998898887766 556999999999999986
No 44
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=99.06 E-value=1.8e-08 Score=101.82 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=119.6
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCcCHHHHHHHHHHHH-----
Q 006890 307 AKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFR----- 381 (627)
Q Consensus 307 ~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tE~ei~~~l~~~~----- 381 (627)
=..+-++.-+...|-|+.++..++..+.+.+ .+|.+-.||...-+.+.
T Consensus 12 d~tia~~~vvtKYk~AgeI~n~~lk~V~~~~---------------------------~~gasv~eiC~~GD~~i~E~t~ 64 (398)
T KOG2776|consen 12 DKTIANDSVVTKYKMAGEIVNKVLKSVVELC---------------------------QPGASVREICEKGDSLILEETG 64 (398)
T ss_pred ccccccHHHHhhhhhHHHHHHHHHHHHHHHh---------------------------cCCchHHHHHHhhhHHHHHHHH
Confidence 3456678888999999999999999887765 56777777777654432
Q ss_pred ----HhhcCCCCCcCCcccccCCCcccccccCCCCc-cCCCCCCCeEEEeecceecCcccceEEEEecCCCC-----HHH
Q 006890 382 ----ASKEHFRGLSFPTISSVGPNAAIMHYSPQSET-CAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPS-----AHE 451 (627)
Q Consensus 382 ----~~~~g~~~~~f~~i~~~G~n~a~~h~~~~~~~-~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~-----~e~ 451 (627)
..+....|.+|||-++ .|-+.+||.|-.+. +..|++||+|-||+|++.+||++.++.|+++|.++ ...
T Consensus 65 kiYK~eK~~~KGIAfPT~Is--vnncv~h~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~k 142 (398)
T KOG2776|consen 65 KIYKKEKDFEKGIAFPTSIS--VNNCVCHFSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRK 142 (398)
T ss_pred HHHhhhhhhhccccccceec--ccceeeccCcCCCCCcccccCCCEEEEEeeeeeccceeeeeeeEEeccCCCCcccCch
Confidence 1134457899999877 56677999996543 67899999999999999999999999999998543 344
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC
Q 006890 452 KACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL 492 (627)
Q Consensus 452 ~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~ 492 (627)
-++..++-.|.+++++.++| |.+-.+|-.+..+...+++.
T Consensus 143 ADvI~AAh~A~eaa~rllkp-gn~n~~vT~~i~k~aas~~c 182 (398)
T KOG2776|consen 143 ADVIAAAHLAAEAALRLLKP-GNTNTQVTRAIVKTAASYGC 182 (398)
T ss_pred hHHHHHHHHHHHHHHHHhCC-CCCCchhhHHHHHHHHHhCC
Confidence 45555555566778888897 98888887777766666553
No 45
>PRK09795 aminopeptidase; Provisional
Probab=98.18 E-value=4.8e-06 Score=89.15 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhccCCcEEEEecCCccceEEccccCCCCCCcceeEEEEEECCceEEEEeCCCCCHHHHHhhhhCCeEEee
Q 006890 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLKESGVEVRD 249 (627)
Q Consensus 170 ~ri~~lr~~m~~~~~d~lll~~~dni~wLtg~rg~d~~~~P~~~a~~lv~~~~~~L~v~~~~~~~~~~~~l~~~~v~v~~ 249 (627)
.|++++|+.|+++++|+++++.++|+.|||||+|+. ++++|+.++..++++.++..++..+ . .+.++..
T Consensus 2 ~Rl~~l~~~m~~~~lDa~lI~~~~n~~YLTGf~g~~--------g~llIt~~~~~l~td~ry~~qa~~~-~--~~~~v~~ 70 (361)
T PRK09795 2 TLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGS--------GYVVISRESAHILVDSRYYADVEAR-A--QGYQLHL 70 (361)
T ss_pred cHHHHHHHHHHHCCCCEEEECCccccccccCccCCC--------eEEEEECCCCEEEcCcchHHHHHhh-C--CCceEEE
Confidence 489999999999999999999999999999999864 5788898888899988765543222 2 2344443
Q ss_pred CCc---hhHHHHHHhhccCCCCCCCCCCCEEEEcCCCCcHHHHhhcCC
Q 006890 250 YDA---VSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLNS 294 (627)
Q Consensus 250 y~~---~~~~~~~~~~~~l~~~~~~~~~~~I~iD~~~~~~~~~~~l~~ 294 (627)
+.. +.+.+..+.. . .+.++|++|...+++..+..|.+
T Consensus 71 ~~~~~~~~~~L~~~L~----~----~~~~~Ig~e~~~~s~~~~~~L~~ 110 (361)
T PRK09795 71 LDATNTLTTIVNQIIA----D----EQLQTLGFEGQQVSWETAHRWQS 110 (361)
T ss_pred ecCCccHHHHHHHHHH----h----cCCcEEEEecCcccHHHHHHHHH
Confidence 322 1223333321 1 12368999998889888877753
No 46
>PRK10879 proline aminopeptidase P II; Provisional
Probab=97.95 E-value=0.00017 Score=79.16 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCc----CccCcCccccccccccccccCceEEEEeCC-----ceEEEEcch
Q 006890 2 AEILAALRSLMSSHDPPLHALVVPSEDYH----QSEYVSARDKRREFVSGFTGSAGLALITMN-----EALLWTDGR 69 (627)
Q Consensus 2 ~~Rl~~Lr~~m~~~~~~~Da~li~~~d~h----~sey~~~~~~~~~ylTGFtgs~g~~vvt~~-----~a~l~tD~R 69 (627)
.+|.++|.+.|.+. .++||++.+.. -.+|.=-.+.|.+|||||.--.+++|+.++ +..||++.+
T Consensus 7 ~~rR~~l~~~~~~~----~~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~ep~~~lv~~~~~~~~~~~~Lf~~~~ 79 (438)
T PRK10879 7 QRRRQALLAKMQPG----SAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVR 79 (438)
T ss_pred HHHHHHHHhhCCCC----cEEEEeCCCccccCCCCCCCccCCCceeeeeCCCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 45777777777653 46677766554 345665667889999999977676666442 246777554
No 47
>PRK15173 peptidase; Provisional
Probab=97.56 E-value=0.00049 Score=72.40 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=40.7
Q ss_pred CEEEEcCCCCCHHHHHHHHHHHHhcCCeEEecCcChhhHhhhcCCCCC
Q 006890 105 AAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVE 152 (627)
Q Consensus 105 ~~vg~d~~~~s~~~~~~l~~~l~~~~~~l~~~~~~lid~lr~~k~~~e 152 (627)
++||+|...+|...++.|++.++ +.++++. +++++++|.+|++.|
T Consensus 56 ~rigve~~~~~~~~~~~l~~~l~--~~~~~d~-~~~i~~lR~iKs~~E 100 (323)
T PRK15173 56 KKIAIDLNIMSNGGKRVIDAVMP--NVDFVDS-SSIFNELRVIKSPWE 100 (323)
T ss_pred CEEEEecCccCHHHHHHHHhhCC--CCeEEEh-HHHHHHHHccCCHHH
Confidence 68999999999999999998874 4789888 889999999999998
No 48
>PLN03158 methionine aminopeptidase; Provisional
Probab=97.01 E-value=0.0029 Score=68.02 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=79.1
Q ss_pred cccceEEEEecCCCC--HHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-Cc---ccccccccccCc
Q 006890 434 GTTDITRTFHFGKPS--AHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YR---HGTGHGVGSYLN 507 (627)
Q Consensus 434 y~~D~tRT~~~G~p~--~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~---h~~GHgvG~~l~ 507 (627)
..+++.|+..+..|. +.+|++...+.+++.++.++++| |++-.+|+.++++.+.+.|.. .+ ++..-++. ..
T Consensus 127 ~~~~~~~~~~IKsp~EIe~mR~A~~ia~~al~~a~~~irp-GvTe~EI~~~v~~~~~~~Ga~ps~l~y~~fp~svc--ts 203 (396)
T PLN03158 127 PNSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKP-GVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCC--TS 203 (396)
T ss_pred cccccccceeeCCHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHcCCccccccccCCCceee--ec
Confidence 356777888887655 45678888888899999999997 999999999999998888741 11 11111111 11
Q ss_pred ccc-CCCcCCCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEEe
Q 006890 508 VHE-GPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 508 vhE-~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
+.+ -+. ..+++.+|++|+++.++.|.+..|. ..-+..|++|.
T Consensus 204 ~N~~i~H---gip~~r~L~~GDiV~iDvg~~~~GY-~aD~tRT~~VG 246 (396)
T PLN03158 204 VNEVICH---GIPDARKLEDGDIVNVDVTVYYKGC-HGDLNETFFVG 246 (396)
T ss_pred ccccccC---CCCCCccCCCCCEEEEEEeEEECCE-EEeEEeEEEcC
Confidence 111 111 1125678999999999999998774 45888898884
No 49
>KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.0035 Score=68.53 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=75.5
Q ss_pred HHHHHHHHhhccCCcEEEEecCCc------------cceEEccccCCCCCCcceeEEEEEECCceEEEEeCCCCCHHHHH
Q 006890 171 KLKELREKLTNEKARGIIITTLDE------------VAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVIS 238 (627)
Q Consensus 171 ri~~lr~~m~~~~~d~lll~~~dn------------i~wLtg~rg~d~~~~P~~~a~~lv~~~~~~L~v~~~~~~~~~~~ 238 (627)
++.++|+.|+..+++++++.+.|. .+|++||.|+. ++++|+..++.|++|.+...++..
T Consensus 11 ~~~~~~~~~~~~~i~aYi~Ps~DaH~sEy~~~~D~R~~flsGFsGsa--------g~Avit~~~a~lwtD~RY~~QA~~- 81 (606)
T KOG2413|consen 11 ELMRLRELMKSPPIDAYILPSTDAHQSEYIADRDERRAFLSGFSGSA--------GTAVITEEEAALWTDGRYFQQAEQ- 81 (606)
T ss_pred HHHHHHHHhcCCCceEEEccCCchhhhhhhcchhhhhhhhcccCCCc--------ceEEEecCcceEEEccHHHHHHHh-
Confidence 689999999999999999999884 79999999986 899999999999999998877644
Q ss_pred hhhhCCeE-EeeCCc---hhHHHHHHhhccCCCCCCCCCCCEEEEcCCCCcHHHHhhc
Q 006890 239 FLKESGVE-VRDYDA---VSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKL 292 (627)
Q Consensus 239 ~l~~~~v~-v~~y~~---~~~~~~~~~~~~l~~~~~~~~~~~I~iD~~~~~~~~~~~l 292 (627)
.|.. .-. .+...+ +.+.+.... ..+.+||+|+..+++..+..+
T Consensus 82 qld~-~W~l~k~~~~~~~v~~wl~~~l----------~~~~~vG~Dp~Lis~~~~~~~ 128 (606)
T KOG2413|consen 82 QLDS-NWTLMKMGEDVPTVEEWLAKVL----------PEGSRVGIDPTLISFDAWKQL 128 (606)
T ss_pred hhcc-cceeeeccCCCccHHHHHHHhC----------CCccccccCcceechhHHHhH
Confidence 3432 111 112222 223332222 357889999998888777654
No 50
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.45 E-value=0.021 Score=57.22 Aligned_cols=99 Identities=16% Similarity=0.090 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-Ccc---cccccccccCccccCCCcCCCCCCCCcc
Q 006890 449 AHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRH---GTGHGVGSYLNVHEGPQSISFKPRNVPI 524 (627)
Q Consensus 449 ~e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h---~~GHgvG~~l~vhE~P~~~~~~~~~~~l 524 (627)
+..|++...+.+++.++.++++| |++-.+|..++++.+++.|.. +.+ +....+....+ ...|. ..+++.+|
T Consensus 2 ~~lr~A~~i~~~~~~~~~~~~~p-G~tE~ev~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~h---~~~~~~~l 76 (238)
T cd01086 2 EGMREAGRIVAEVLDELAKAIKP-GVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVN-EVVCH---GIPDDRVL 76 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHcCCCcccccCCCCCcceecCCC-CceeC---CCCCCccc
Confidence 35788999999999999999997 999999999999999999862 111 00011110011 00111 11256789
Q ss_pred cCCcEEeeCceeeecCccEEEEeEeeEEe
Q 006890 525 HASMTATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 525 ~~Gmv~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
++|+++.+++|....| |...++.|+++.
T Consensus 77 ~~Gd~v~id~g~~~~G-Y~ad~~RT~~~G 104 (238)
T cd01086 77 KDGDIVNIDVGVELDG-YHGDSARTFIVG 104 (238)
T ss_pred CCCCEEEEEEEEEECC-EEEEEEEEEECC
Confidence 9999999999986655 556889998885
No 51
>PRK05716 methionine aminopeptidase; Validated
Probab=95.93 E-value=0.051 Score=54.99 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC--Cccccccc----ccccCccccCCCcCCCCCCCCc
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHG----VGSYLNVHEGPQSISFKPRNVP 523 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~--~~h~~GHg----vG~~l~vhE~P~~~~~~~~~~~ 523 (627)
.+|++...+.+++.++.++++| |++-.+|+.++++.+++.|.. +.+..++. .| .+ .-.| ...+++.+
T Consensus 13 ~~r~A~~i~~~~~~~a~~~i~p-G~se~ela~~~~~~~~~~G~~~~~~~~~~~~~~~~~g--~~-~~~~---h~~~~~~~ 85 (252)
T PRK05716 13 KMRVAGRLAAEVLDEIEPHVKP-GVTTKELDRIAEEYIRDQGAIPAPLGYHGFPKSICTS--VN-EVVC---HGIPSDKV 85 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHCCCEecccCCCCCCcCeEec--cc-ceee---cCCCCCcc
Confidence 3577888888899999999997 999999999999999998863 11111111 11 11 0011 11125688
Q ss_pred ccCCcEEeeCceeeecCccEEEEeEeeEE
Q 006890 524 IHASMTATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 524 l~~Gmv~siEPg~y~~~~~GvriEd~v~V 552 (627)
|++||++.++.|.... .|..-+.-|+++
T Consensus 86 l~~Gd~v~id~g~~~~-gY~~d~~RT~~v 113 (252)
T PRK05716 86 LKEGDIVNIDVTVIKD-GYHGDTSRTFGV 113 (252)
T ss_pred cCCCCEEEEEEEEEEC-CEEEEeEEEEEC
Confidence 9999999999998764 466677777776
No 52
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=95.70 E-value=0.086 Score=55.29 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcC-CCCcCccCc---CccccccccccccccCceEEEEeC-C----ceEEEEcchh
Q 006890 2 AEILAALRSLMSSHDPPLHALVVPS-EDYHQSEYV---SARDKRREFVSGFTGSAGLALITM-N----EALLWTDGRY 70 (627)
Q Consensus 2 ~~Rl~~Lr~~m~~~~~~~Da~li~~-~d~h~sey~---~~~~~~~~ylTGFtgs~g~~vvt~-~----~a~l~tD~RY 70 (627)
.+|..+|-+++.++ +.+||.+ +=-|+|-=+ =-.+.+.+||||+.-..+++++++ | ...+|.+++-
T Consensus 68 ~~RR~rl~~ll~~~----a~~il~sap~~~msg~ipY~f~Qd~df~YLtGc~EP~~vl~l~~~d~~s~~~~lf~p~kd 141 (488)
T KOG2414|consen 68 KERRSRLMSLLPAN----AMVILGSAPVKYMSGAIPYTFRQDNDFYYLTGCLEPDAVLLLLKGDERSVAYDLFMPPKD 141 (488)
T ss_pred HHHHHHHHHhCCcc----cEEEEccCchhhhcCccceeeecCCCeEEEeccCCCCeeEEEeecccccceeeEecCCCC
Confidence 56888888888775 4555544 445666533 366789999999999999888853 2 2346665543
No 53
>PRK12896 methionine aminopeptidase; Reviewed
Probab=95.43 E-value=0.079 Score=53.68 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=70.5
Q ss_pred EEEEecCCCCH--HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-Ccc---ccc--ccccccCcccc
Q 006890 439 TRTFHFGKPSA--HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRH---GTG--HGVGSYLNVHE 510 (627)
Q Consensus 439 tRT~~~G~p~~--e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h---~~G--HgvG~~l~vhE 510 (627)
.|++.+-.+.+ ..|++...+.+++.++.+.++| |++-.+|...++..+.+.|.. ..+ +.. -..| .+ ..
T Consensus 5 ~~~~~vKs~~Ei~~~r~a~~i~~~~~~~~~~~i~p-G~te~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~n-~~ 80 (255)
T PRK12896 5 GRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEP-GMTTKELDRIAEKRLEEHGAIPSPEGYYGFPGSTCIS--VN-EE 80 (255)
T ss_pred CCceeECCHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHCCCEeCcccCCCCCcceEec--CC-Ce
Confidence 57777754433 3567777777888888899997 999999999999999998863 111 111 1112 21 11
Q ss_pred CCCcCCCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEE
Q 006890 511 GPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 511 ~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V 552 (627)
.++. .+++.+|++|.++.++.|....| |..-+.-|+++
T Consensus 81 ~~h~---~p~~~~l~~Gd~v~iD~g~~~~g-Y~aD~~RT~~v 118 (255)
T PRK12896 81 VAHG---IPGPRVIKDGDLVNIDVSAYLDG-YHGDTGITFAV 118 (255)
T ss_pred eEec---CCCCccCCCCCEEEEEEeEEECc-EEEeeEEEEEC
Confidence 1211 12557899999999999987654 55566666666
No 54
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=95.11 E-value=0.16 Score=52.57 Aligned_cols=96 Identities=8% Similarity=0.019 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCCCcccccccccccCccccCCCcCCCCCCCCcccCCcE
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMT 529 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv 529 (627)
.+|++...+.+++.++.+.++| |++..+|.....+.+.+.|....+.++=+++.. ..|-.|.. + ++.+|++|++
T Consensus 3 ~~r~Aa~I~~~a~~~~~~~i~p-G~te~ei~~~~~~~i~~~G~~~afp~~is~n~~-~~H~~p~~---~-d~~~l~~GDv 76 (291)
T cd01088 3 KYREAGEIHRQVRKYAQSLIKP-GMTLLEIAEFVENRIRELGAGPAFPVNLSINEC-AAHYTPNA---G-DDTVLKEGDV 76 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHcCCCCCCCceeccCCE-eeCCCCCC---C-CCcccCCCCE
Confidence 5678888889999999999997 999999999999999998853222222111110 11222211 1 4578999999
Q ss_pred EeeCceeeecCccEEEEeEeeEE
Q 006890 530 ATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 530 ~siEPg~y~~~~~GvriEd~v~V 552 (627)
+.++.|...+| |-.-+.-|+.+
T Consensus 77 V~iD~G~~~dG-Y~sD~arT~~v 98 (291)
T cd01088 77 VKLDFGAHVDG-YIADSAFTVDF 98 (291)
T ss_pred EEEEEEEEECC-EEEEEEEEEec
Confidence 99999987765 33334444444
No 55
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=94.84 E-value=0.12 Score=51.93 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC----CcccccccccccCcc-----ccCCCcCCCCCCC
Q 006890 451 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD----YRHGTGHGVGSYLNV-----HEGPQSISFKPRN 521 (627)
Q Consensus 451 ~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~----~~h~~GHgvG~~l~v-----hE~P~~~~~~~~~ 521 (627)
+|++-..+.+++..+...++| |++..+|+.++++++.+.|.. -.++..-.+. +++ |--|. ++
T Consensus 14 ~r~Ag~i~a~~l~~~~~~v~p-Gvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~c--iSvNe~v~HgiP~------d~ 84 (255)
T COG0024 14 MREAGKIAAKALKEVASLVKP-GVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTC--ISVNEVVAHGIPG------DK 84 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHcCceehhccCcCCCcceE--eehhheeeecCCC------CC
Confidence 456666677778888888997 999999999999999986651 1122222233 333 22232 46
Q ss_pred CcccCCcEEeeCceeeecCcc
Q 006890 522 VPIHASMTATDEPGYYEDGNF 542 (627)
Q Consensus 522 ~~l~~Gmv~siEPg~y~~~~~ 542 (627)
.+|++|.++.|.-|.+.+|.+
T Consensus 85 ~vlk~GDiv~IDvg~~~dG~~ 105 (255)
T COG0024 85 KVLKEGDIVKIDVGAHIDGYI 105 (255)
T ss_pred cccCCCCEEEEEEEEEECCee
Confidence 789999999999999988754
No 56
>PRK13607 proline dipeptidase; Provisional
Probab=94.10 E-value=0.15 Score=56.08 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCcCc-----cCcCcccccccccccccc-CceEEEEeC--C-ceEEEEc
Q 006890 6 AALRSLMSSHDPPLHALVVPSEDYHQS-----EYVSARDKRREFVSGFTG-SAGLALITM--N-EALLWTD 67 (627)
Q Consensus 6 ~~Lr~~m~~~~~~~Da~li~~~d~h~s-----ey~~~~~~~~~ylTGFtg-s~g~~vvt~--~-~a~l~tD 67 (627)
+++++.|++.+ .+++||.+..+... +|.=-.+.+.+||||+.- ..+++++.. + +.+||.+
T Consensus 17 ~r~~~~~~~~~--~~~i~l~~g~~~~~~~~D~~~~Frq~s~F~yl~G~~~~p~~~~~i~~~~~~~~~l~~~ 85 (443)
T PRK13607 17 QRTRDALAREG--LDALLIHSGELHRVFLDDHDYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYQP 85 (443)
T ss_pred HHHHHHHhccC--CCEEEEECCCcccccCCCCCCCcCcCCCcchhcCCCCCCCeEEEEEeCCCCEEEEEec
Confidence 34445666554 78888887766533 455566678889999964 344455432 2 4556654
No 57
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.25 Score=49.81 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=77.8
Q ss_pred EeecceecCcccceEEEEecCCCCHH----HHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC--------
Q 006890 425 CDSGAQYQDGTTDITRTFHFGKPSAH----EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL-------- 492 (627)
Q Consensus 425 iD~g~~y~gy~~D~tRT~~~G~p~~e----~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~-------- 492 (627)
.|.|.....-..+.++-+-+ ++++ +|+...+..+..+.+..+++| |++..+||.++.+..-+.|-
T Consensus 97 a~~g~s~se~~~~~s~~i~i--~~~e~ie~mR~ac~LarevLd~Aa~~v~P-gvTTdEiD~~VH~a~Ierg~YPSPLnYy 173 (369)
T KOG2738|consen 97 ADSGVSLSEQPEISSNEIKI--LDPEGIEGMRKACRLAREVLDYAATLVRP-GVTTDEIDRAVHNAIIERGAYPSPLNYY 173 (369)
T ss_pred hhcCCcccccccccccceec--cCHHHHHHHHHHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHHHhcCCcCCCcccC
Confidence 34454444444455554554 4444 566777778888899999998 99999999999998888874
Q ss_pred CCcccccccccccCccccCCCcCCCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEEec
Q 006890 493 DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 554 (627)
Q Consensus 493 ~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~~ 554 (627)
.|+..+--+|--. -.|-- |+.++||.|.++.|...+|..|..| -+..|++|.+
T Consensus 174 ~FPKS~CTSVNEv-iCHGI-------PD~RpLedGDIvNiDVtvY~~GyHG-DlneTffvG~ 226 (369)
T KOG2738|consen 174 GFPKSVCTSVNEV-ICHGI-------PDSRPLEDGDIVNIDVTVYLNGYHG-DLNETFFVGN 226 (369)
T ss_pred CCchhhhcchhhe-eecCC-------CCcCcCCCCCEEeEEEEEEeccccC-ccccceEeec
Confidence 1333222222210 01111 2678999999999999999887544 3556677765
No 58
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=91.25 E-value=1.5 Score=47.36 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC-CCcc--ccccccccc--Ccc-----ccCCCcCCCCCC
Q 006890 451 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL-DYRH--GTGHGVGSY--LNV-----HEGPQSISFKPR 520 (627)
Q Consensus 451 ~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~-~~~h--~~GHgvG~~--l~v-----hE~P~~~~~~~~ 520 (627)
.|++-..+.+++..+...++| |++-.+|+..+.+.+++.+- -|.. ...+|+++. +.+ |-.|.. +.+
T Consensus 22 ~r~Aa~Ia~~~l~~~~~~ikp-G~t~~el~~~~~~~i~~~~a~~~~~~~~~~~g~afpt~vSvN~~v~H~~P~~---~d~ 97 (389)
T TIGR00495 22 YKMAGEIANNVLKSVVEACSP-GAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCISVNNCVGHFSPLK---SDQ 97 (389)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhhhhhhcccccccCCCCCCeEEecCCeeeCCCCCC---CCC
Confidence 455556666677788888997 99999999999888887542 1111 112233311 111 222321 002
Q ss_pred CCcccCCcEEeeCceeeecCccEEEEeEeeEEec
Q 006890 521 NVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 554 (627)
Q Consensus 521 ~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~~ 554 (627)
+..|++|.++.+.-|...+| |..-+..|++|.+
T Consensus 98 ~~~Lk~GDvVkIDlG~~idG-Y~aD~arTv~vG~ 130 (389)
T TIGR00495 98 DYILKEGDVVKIDLGCHIDG-FIALVAHTFVVGV 130 (389)
T ss_pred CcCcCCCCEEEEEEEEEECC-EEEEEEEEEEECC
Confidence 47899999999999998876 5666888888853
No 59
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=90.46 E-value=1.6 Score=42.42 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHH-HHHcCCC-CcccccccccccCcccc-CCCcCCCCCCCCcccC
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLP-LWKYGLD-YRHGTGHGVGSYLNVHE-GPQSISFKPRNVPIHA 526 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~-l~~~G~~-~~h~~GHgvG~~l~vhE-~P~~~~~~~~~~~l~~ 526 (627)
..|++...+.+++.++.+.++| |++-.+|...+.+. +.+.|.. ..+..-=+.| .+. .|.. .+++.+|++
T Consensus 2 ~~R~a~~i~~~~~~~~~~~~~~-G~te~ei~~~~~~~~~~~~g~~~~~~~~~~~~g----~~~~~~~~---~~~~~~l~~ 73 (207)
T PF00557_consen 2 CMRKAARIADAAMEAAMEALRP-GMTEYEIAAAIERAMLRRHGGEEPAFPPIVGSG----PNTDLPHY---TPTDRRLQE 73 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST-TCBHHHHHHHHHHHHHHHTTTTEESSESEEEEC----CCCGETTT---BCCSSBEST
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHHcCCCcccCCceEecC----Ccceecce---eccceeeec
Confidence 4678888999999999999997 99999999999887 6777742 2222111122 111 1222 225678999
Q ss_pred CcEEeeCceeeecCccEEEEeEeeEE
Q 006890 527 SMTATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 527 Gmv~siEPg~y~~~~~GvriEd~v~V 552 (627)
|+++.++-|.-.. .|-.-+.-|+++
T Consensus 74 gd~v~id~~~~~~-gy~~d~~Rt~~~ 98 (207)
T PF00557_consen 74 GDIVIIDFGPRYD-GYHADIARTFVV 98 (207)
T ss_dssp TEEEEEEEEEEET-TEEEEEEEEEES
T ss_pred CCcceeeccceee-eeEeeeeeEEEE
Confidence 9999999877655 355566666655
No 60
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=89.44 E-value=2.9 Score=41.94 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCCCcccccccccccCccc-cCCCcCCCCCCCCcccCCc
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVH-EGPQSISFKPRNVPIHASM 528 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~~~h~~GHgvG~~l~vh-E~P~~~~~~~~~~~l~~Gm 528 (627)
..|++...+.++..++.+.++| |++-.+|...+...+.+.|... ..+.-|+ .+.+ ..|. ..+++.+|++|.
T Consensus 3 ~lr~A~~i~~~~~~~~~~~i~p-G~tE~ei~~~~~~~~~~~G~~~--~~~~~v~--~g~~~~~~H---~~~~~~~l~~Gd 74 (243)
T cd01087 3 LMRKACDISAEAHRAAMKASRP-GMSEYELEAEFEYEFRSRGARL--AYSYIVA--AGSNAAILH---YVHNDQPLKDGD 74 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHHcCCCc--CCCCeEE--ECCCccccC---CCcCCCcCCCCC
Confidence 4678888888899999999997 9999999999999999988651 1122222 1111 1222 122567899999
Q ss_pred EEeeCceeeecCccEEEEeEeeEE
Q 006890 529 TATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 529 v~siEPg~y~~~~~GvriEd~v~V 552 (627)
++.++.|....| |-.-+.-|+.|
T Consensus 75 ~v~vD~g~~~~G-Y~ad~~Rt~~v 97 (243)
T cd01087 75 LVLIDAGAEYGG-YASDITRTFPV 97 (243)
T ss_pred EEEEEeCceECC-EeeeeeEEEEe
Confidence 999998876543 44555566655
No 61
>PRK12897 methionine aminopeptidase; Reviewed
Probab=89.31 E-value=3.3 Score=41.70 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCCCc----ccccccccccCccccCCCcCCCCCCCCcccC
Q 006890 451 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYR----HGTGHGVGSYLNVHEGPQSISFKPRNVPIHA 526 (627)
Q Consensus 451 ~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~~~----h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~ 526 (627)
.|++-..+.+++.++.+.++| |++-.+|.......+++.|.... .+....|....+ --.|+ ..+++.+|++
T Consensus 13 ~r~A~~i~~~~~~~~~~~~~~-G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~i~~g~n-~~~~H---~~p~~~~l~~ 87 (248)
T PRK12897 13 MHESGKLLASCHREIAKIMKP-GITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVN-DEMCH---AFPADVPLTE 87 (248)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-CCcHHHHHHHHHHHHHHcCCcccccccCCCCcceEeccC-CEeec---CCCCCcccCC
Confidence 355666667778888888997 99999999999999999886411 011111110011 00111 1125678999
Q ss_pred CcEEeeCceeeecCccEEEEeEeeEE
Q 006890 527 SMTATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 527 Gmv~siEPg~y~~~~~GvriEd~v~V 552 (627)
|.++.++-|.-..| |..-+.-|++|
T Consensus 88 Gd~V~iD~g~~~~G-Y~sD~tRT~~v 112 (248)
T PRK12897 88 GDIVTIDMVVNLNG-GLSDSAWTYRV 112 (248)
T ss_pred CCEEEEEeeEEECC-EEEEEEEEEEc
Confidence 99999998875443 44556666666
No 62
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=89.06 E-value=2.7 Score=40.78 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-CcccccccccccCccccCCCcCCCCCCCCcccCCc
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASM 528 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gm 528 (627)
-.|+....+.++..++.+.++| |++-.+|....+..+.+.|.. +.+.+--+.| .+ ...|.. .+++.+|++|.
T Consensus 3 ~~r~a~~i~~~~~~~~~~~~~~-G~te~ei~~~~~~~~~~~g~~~~~~~~~v~~g--~~-~~~~h~---~~~~~~l~~gd 75 (208)
T cd01092 3 LLRKAARIADKAFEELLEFIKP-GMTEREVAAELEYFMRKLGAEGPSFDTIVASG--PN-SALPHG---VPSDRKIEEGD 75 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHCcC-CCCHHHHHHHHHHHHHHcCCCCCCCCcEEEEC--cc-ccccCC---CCCCcCcCCCC
Confidence 3577788888888888899997 999999999999999888863 3332222333 11 112221 12567899999
Q ss_pred EEeeCceeeecCccEEEEeEeeEEe
Q 006890 529 TATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 529 v~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
++.++.|.... .|-.-+..|+++.
T Consensus 76 ~v~id~g~~~~-gy~~d~~RT~~~g 99 (208)
T cd01092 76 LVLIDFGAIYD-GYCSDITRTVAVG 99 (208)
T ss_pred EEEEEeeeeEC-CEeccceeEEECC
Confidence 99999887544 3455566777765
No 63
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=87.86 E-value=4.7 Score=41.87 Aligned_cols=95 Identities=9% Similarity=0.065 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC--CcccccccccccCccccCCCcCCCCCCCCcccCC
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHAS 527 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~--~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~G 527 (627)
..|++-..+.+++..+.+.++| |++-.+|.......+.+.|-. |+..+. ++.. ..|-.|.. . ++..|++|
T Consensus 7 ~~r~A~~I~~~~~~~~~~~i~~-G~se~el~~~~e~~~~~~g~~~aFp~~vs--~n~~-~~H~~p~~---~-d~~~l~~G 78 (295)
T TIGR00501 7 KWIEAGKIHSKVRREAADRIVP-GVKLLEVAEFVENRIRELGAEPAFPCNIS--INEC-AAHFTPKA---G-DKTVFKDG 78 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHCcC-CCCHHHHHHHHHHHHHHcCCCCCCCccee--cCCE-eeCCCCCC---C-cCccCCCC
Confidence 3456666677778888889997 999999999999999998864 332221 2211 12433421 1 45689999
Q ss_pred cEEeeCceeeecCccEEEEeEeeEEe
Q 006890 528 MTATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 528 mv~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
.++.++.|...+| |-.-+.-|+++.
T Consensus 79 DvV~iD~G~~~dG-Y~aD~arT~~vG 103 (295)
T TIGR00501 79 DVVKLDLGAHVDG-YIADTAITVDLG 103 (295)
T ss_pred CEEEEEEeEEECC-EEEEEEEEEEeC
Confidence 9999999988765 555566676663
No 64
>PRK08671 methionine aminopeptidase; Provisional
Probab=87.75 E-value=5.3 Score=41.35 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC--CcccccccccccCccccCCCcCCCCCCCCcccCC
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHAS 527 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~--~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~G 527 (627)
..|++-..+.++...+.+.++| |++-.||.......+.+.|.. |+..+ ++|.. ..|-.|.. . ++.+|++|
T Consensus 4 ~~r~A~~I~~~~~~~~~~~i~p-G~se~ei~~~~~~~i~~~g~~~afp~~v--s~n~~-~~H~~p~~---~-d~~~l~~G 75 (291)
T PRK08671 4 KYLEAGKIASKVREEAAKLIKP-GAKLLDVAEFVENRIRELGAKPAFPCNI--SINEV-AAHYTPSP---G-DERVFPEG 75 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHHcCCccCCCCEE--eeCCC-ccCCCCCC---C-CCcccCCC
Confidence 4577778888888888999997 999999999999999988753 32212 22311 12333321 1 35689999
Q ss_pred cEEeeCceeeecCccEEEEeEeeEEe
Q 006890 528 MTATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 528 mv~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
.++.++.|....| |-.-+.-|+++.
T Consensus 76 DvV~iD~G~~~dG-Y~aD~arT~~vG 100 (291)
T PRK08671 76 DVVKLDLGAHVDG-YIADTAVTVDLG 100 (291)
T ss_pred CEEEEEEeEEECC-EEEEEEEEEEeC
Confidence 9999999987665 444455566653
No 65
>PRK07281 methionine aminopeptidase; Reviewed
Probab=87.53 E-value=3.6 Score=42.47 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCCC-cccc-ccccccc----Ccc-ccCCCcCCCCCCCCc
Q 006890 451 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDY-RHGT-GHGVGSY----LNV-HEGPQSISFKPRNVP 523 (627)
Q Consensus 451 ~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~~-~h~~-GHgvG~~----l~v-hE~P~~~~~~~~~~~ 523 (627)
.|++-..+.+++.++.+.++| |++-.+|++.++..+++.|... .+|. |++.++- ..+ ..-|+. .+++.+
T Consensus 13 mr~A~~i~~~~~~~~~~~i~p-G~te~ei~~~~~~~~~~~g~~~~~~G~~~~~~~f~~~v~~G~n~~~~H~---~p~~~~ 88 (286)
T PRK07281 13 MDRAGDFLASIHIGLRDLIKP-GVDMWEVEEYVRRRCKEENVLPLQIGVDGAMMDYPYATCCGLNDEVAHA---FPRHYI 88 (286)
T ss_pred HHHHHHHHHHHHHHHHHHCcC-CCcHHHHHHHHHHHHHHcCCcccccCCCCcccCCCcceEEeccccccCC---CCCCcC
Confidence 456667777788888889997 9999999999999999887521 1111 1111100 111 112222 226678
Q ss_pred ccCCcEEeeCcee
Q 006890 524 IHASMTATDEPGY 536 (627)
Q Consensus 524 l~~Gmv~siEPg~ 536 (627)
|++|.++.++-|.
T Consensus 89 l~~Gd~v~iD~g~ 101 (286)
T PRK07281 89 LKEGDLLKVDMVL 101 (286)
T ss_pred cCCCCEEEEEecc
Confidence 9999999999875
No 66
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=87.14 E-value=3.3 Score=39.72 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCCCcccccccccccCccccCCCcCCCCCCCCcccCCcE
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMT 529 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv 529 (627)
..|+.-..+.++..++...++| |++-.++....++.+.+.|..+.+.+-=+.| +........+++.++++|.+
T Consensus 3 ~~r~a~~i~~~~~~~~~~~~~~-G~te~ei~~~~~~~~~~~g~~~~~~~~v~~g------~~~~~~h~~~~~~~i~~gd~ 75 (207)
T cd01066 3 RLRKAAEIAEAAMAAAAEAIRP-GVTEAEVAAAIEQALRAAGGYPAGPTIVGSG------ARTALPHYRPDDRRLQEGDL 75 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHCcC-CCCHHHHHHHHHHHHHHcCCCCCCCcEEEEC------ccccCcCCCCCCCCcCCCCE
Confidence 4577788888899999999997 9999999999999999988733332222222 10111112224578999999
Q ss_pred EeeCceeeecCccEEEEeEeeEEe
Q 006890 530 ATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 530 ~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
+.++.|....| |-.-+..|+++.
T Consensus 76 v~~d~g~~~~g-y~~d~~rt~~~g 98 (207)
T cd01066 76 VLVDLGGVYDG-YHADLTRTFVIG 98 (207)
T ss_pred EEEEeceeECC-CccceeceeEcC
Confidence 99998876553 444455555553
No 67
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=86.94 E-value=4.9 Score=40.33 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-Cccc-cc----ccccccCccccCCCcCCCCCCCCcc
Q 006890 451 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRHG-TG----HGVGSYLNVHEGPQSISFKPRNVPI 524 (627)
Q Consensus 451 ~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h~-~G----HgvG~~l~vhE~P~~~~~~~~~~~l 524 (627)
.|++...+.+++.++.++++| |++-.+|...++..+++.|.. ..++ .+ .+.| .+ ...|+ ..+++.+|
T Consensus 12 ~r~A~~i~~~~~~~~~~~i~~-G~tE~el~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~--~n-~~~~H---~~~~~~~l 84 (247)
T TIGR00500 12 IRKAGRLAAEVLEELEREVKP-GVSTKELDRIAKDFIEKHGAKPAFLGYYGFPGSVCIS--VN-EVVIH---GIPDKKVL 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHCCCCccccCCCCCCceeEec--cc-cEEEe---cCCCCccc
Confidence 345566666677778888997 999999999999999998853 1111 11 1122 11 11111 22257789
Q ss_pred cCCcEEeeCceeeecCccEEEEeEeeEEe
Q 006890 525 HASMTATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 525 ~~Gmv~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
++|.++.++-|.-.. .|-.-+.-|++|.
T Consensus 85 ~~Gd~v~iD~g~~~~-gY~aD~~RT~~vG 112 (247)
T TIGR00500 85 KDGDIVNIDVGVIYD-GYHGDTAKTFLVG 112 (247)
T ss_pred CCCCEEEEEEEEEEC-CEEEEEEEEEEcC
Confidence 999999999887543 3555666677663
No 68
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=86.72 E-value=4.9 Score=39.97 Aligned_cols=95 Identities=13% Similarity=0.022 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCC---CCcccccc----cccccCccccCCCcCCCCCCCC
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL---DYRHGTGH----GVGSYLNVHEGPQSISFKPRNV 522 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~---~~~h~~GH----gvG~~l~vhE~P~~~~~~~~~~ 522 (627)
..|++-..+.+++.++.+.++| |++-.+|.+.+...+.+.|- .+.+..+. ..| .+ ...|.. .+++.
T Consensus 3 ~ir~Aa~i~d~~~~~~~~~i~p-G~tE~ei~a~~~~~~~~~ga~~~~~~~~~~~~~~v~~G--~~-~~~~H~---~~~~r 75 (228)
T cd01090 3 LIRHGARIADIGGAAVVEAIRE-GVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSG--IN-TDGAHN---PVTNR 75 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCccCCcccccCcceEEEee--cc-ccccCC---CCCCc
Confidence 4677888888999999999997 99999999998888888763 22211110 122 11 112222 12567
Q ss_pred cccCCcEEeeCceeeecCccEEEEeEeeEE
Q 006890 523 PIHASMTATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 523 ~l~~Gmv~siEPg~y~~~~~GvriEd~v~V 552 (627)
+|++|.++.++.|....| |..-++-|++|
T Consensus 76 ~l~~GD~v~~d~g~~~~G-Y~ad~~RT~~v 104 (228)
T cd01090 76 KVQRGDILSLNCFPMIAG-YYTALERTLFL 104 (228)
T ss_pred ccCCCCEEEEEEeEEECC-EeeeeEEEEEC
Confidence 899999999998865544 44556666665
No 69
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=86.29 E-value=6.5 Score=39.03 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHcCCC-Ccc--ccccccccc--Cc-----cccCCCcCCCCC
Q 006890 450 HEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLD-YRH--GTGHGVGSY--LN-----VHEGPQSISFKP 519 (627)
Q Consensus 450 e~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~~G~~-~~h--~~GHgvG~~--l~-----vhE~P~~~~~~~ 519 (627)
..|++-..+.+++.++.+.++| |++-.+|...+.+.+.+..-. |.. ....|.++. +. .|-.|... +
T Consensus 3 ~~r~A~~I~~~~~~~~~~~i~p-G~te~ei~~~~e~~i~~~~~~~~~~~~~g~~g~~~~~~v~~n~~~~H~~p~~~---~ 78 (228)
T cd01089 3 KYKTAGQIANKVLKQVISLCVP-GAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISVNNCVCHFSPLKS---D 78 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHHHhhcccccCcccccCCCCcCeEeccCceeecCCCCCC---C
Confidence 4678888888999999999997 999999987777766663221 111 111222210 11 12222210 1
Q ss_pred CCCcccCCcEEeeCceeeecCccEEEEeEeeEEe
Q 006890 520 RNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 553 (627)
Q Consensus 520 ~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~ 553 (627)
++.+|++|.++.++.|....| |-.-+..|++|.
T Consensus 79 ~~~~l~~Gd~v~iD~g~~~~G-Y~sD~tRT~~vG 111 (228)
T cd01089 79 ATYTLKDGDVVKIDLGCHIDG-YIAVVAHTIVVG 111 (228)
T ss_pred CCcccCCCCEEEEEEEEEECC-EEEEEEEEEEeC
Confidence 567899999999999987765 556677788774
No 70
>PRK12318 methionine aminopeptidase; Provisional
Probab=84.95 E-value=6.3 Score=40.81 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=78.8
Q ss_pred cccccCCCcccccccCCCCccCCCCCCCeEEEeecceecCcccceEEEEecCCCCHH---HHHHHHHHHHHHHHHHhccC
Q 006890 394 TISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAH---EKACYTAVLKGHIALGNAVF 470 (627)
Q Consensus 394 ~i~~~G~n~a~~h~~~~~~~~~~l~~gd~vliD~g~~y~gy~~D~tRT~~~G~p~~e---~~~~y~~v~~~~~~~~~~~~ 470 (627)
..+++|..--.+||.-..+ +...++ + ..|.+. +| +.+ +-+.| .|++-..+-+++.++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~--~~~~~~---~-------~~~~~~-~~-i~I-Ks~~EIe~~R~Aa~I~~~a~~a~~~~ir 71 (291)
T PRK12318 7 CWCGSGKKWKHCHYPTKPE--RSLENL---K-------QLYASQ-YD-III-KTPEQIEKIRKACQVTARILDALCEAAK 71 (291)
T ss_pred CccCCCccccccccccCcc--cccccc---c-------hhccCC-Cc-eEE-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567777766678764321 222221 1 222222 22 234 22333 35566666777888888999
Q ss_pred CCCcccchHHHHHHHHHHHcCCC-Cccccc-----ccccccCcccc-CCCcCCCCCCCCcccCCcEEeeCceeeecCccE
Q 006890 471 PNGTCGHTLDILARLPLWKYGLD-YRHGTG-----HGVGSYLNVHE-GPQSISFKPRNVPIHASMTATDEPGYYEDGNFG 543 (627)
Q Consensus 471 p~G~~~~~l~~~a~~~l~~~G~~-~~h~~G-----HgvG~~l~vhE-~P~~~~~~~~~~~l~~Gmv~siEPg~y~~~~~G 543 (627)
| |++-.+|..+++..+.+.|.. .....| ..|. ..... -|+ ..+++.+|++|.++.++.|....| |.
T Consensus 72 p-G~tE~Eiaa~~~~~~~~~G~~~~~~~~~~~~f~~~v~--~g~n~~~~H---~~p~~~~l~~GD~V~vD~g~~~~G-Y~ 144 (291)
T PRK12318 72 E-GVTTNELDELSRELHKEYNAIPAPLNYGSPPFPKTIC--TSLNEVICH---GIPNDIPLKNGDIMNIDVSCIVDG-YY 144 (291)
T ss_pred C-CCCHHHHHHHHHHHHHHcCCCccccccCCCCCCcceE--eeccceeec---CCCCCCccCCCCEEEEEEeEEECc-EE
Confidence 7 999999998888888877742 101111 1111 11111 111 112567899999999999876543 55
Q ss_pred EEEeEeeEE
Q 006890 544 IRLENVLVV 552 (627)
Q Consensus 544 vriEd~v~V 552 (627)
.-+.-|++|
T Consensus 145 aDitRT~~v 153 (291)
T PRK12318 145 GDCSRMVMI 153 (291)
T ss_pred EEEEEEEEC
Confidence 667777766
No 71
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=84.22 E-value=4 Score=37.02 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHHhhccCCcEEEEecCC----------------ccceEEccccCCCCCCcceeEEEEE-EC--CceEEE
Q 006890 166 SSVVEKLKELREKLTNEKARGIIITTLD----------------EVAWLYNIRGTDVPYCPVVHAFAIV-TT--NAAFLY 226 (627)
Q Consensus 166 ~~~~~ri~~lr~~m~~~~~d~lll~~~d----------------ni~wLtg~rg~d~~~~P~~~a~~lv-~~--~~~~L~ 226 (627)
..+.+|.++|.+.|.. -..+++.+.+ ++.||||+.-.+ +++++ .. ++.+||
T Consensus 4 ~~~~~RR~~l~~~l~~--~~~vil~~~~~~~~~~D~~y~FrQ~s~F~YLTG~~ep~--------~~lvl~~~~~~~~~LF 73 (134)
T PF05195_consen 4 EEYAERRKKLAEKLPD--NSIVILPGGPEKYRSNDIEYPFRQDSNFYYLTGFNEPD--------AVLVLKDGESGKSTLF 73 (134)
T ss_dssp HHHHHHHHHHHHHSHS--SEEEEEE----EEEETTEEE-----HHHHHHH---STT---------EEEEEECTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCC--CcEEEEECCCeeeecCCCccccccCCcEEEEeCCCCCC--------EEEEEecCCCCeEEEE
Confidence 4678999999999986 2344444433 588999876544 67777 32 478999
Q ss_pred EeCCCCCHHH--------HHhhhhCCe-EEeeCCchhHHHHHHh
Q 006890 227 VDKRKVSSEV--------ISFLKESGV-EVRDYDAVSSDVVLLQ 261 (627)
Q Consensus 227 v~~~~~~~~~--------~~~l~~~~v-~v~~y~~~~~~~~~~~ 261 (627)
+++.....++ ++..+..|+ ++.+.+++.+.+..+.
T Consensus 74 ~~~~d~~~e~W~G~~~~~e~a~~~~gvd~v~~~~~l~~~l~~~~ 117 (134)
T PF05195_consen 74 VPPKDPDDEIWDGPRPGPEEAKEIYGVDEVYYIDELEEVLSELL 117 (134)
T ss_dssp E----CCGHHCCSS--HHHHHHHHHT-SEEEEGGGHHHHHHHHH
T ss_pred eCCCCcCccEECccCCCHHHHHHHhCCCEEEEHHHHHHHHHHHH
Confidence 9876644332 222233466 6777777777776665
No 72
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=83.51 E-value=0.98 Score=41.02 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCc-Cc---cCcCccccccccccccccCceEEEE-eC--CceEEEEcch
Q 006890 2 AEILAALRSLMSSHDPPLHALVVPSEDYH-QS---EYVSARDKRREFVSGFTGSAGLALI-TM--NEALLWTDGR 69 (627)
Q Consensus 2 ~~Rl~~Lr~~m~~~~~~~Da~li~~~d~h-~s---ey~~~~~~~~~ylTGFtgs~g~~vv-t~--~~a~l~tD~R 69 (627)
.+|.++|.+.|.+. .++||++.++. .| +|.=-.+.+.+||||+.-..+++|+ .. ++..||++.+
T Consensus 7 ~~RR~~l~~~l~~~----~~vil~~~~~~~~~~D~~y~FrQ~s~F~YLTG~~ep~~~lvl~~~~~~~~~LF~~~~ 77 (134)
T PF05195_consen 7 AERRKKLAEKLPDN----SIVILPGGPEKYRSNDIEYPFRQDSNFYYLTGFNEPDAVLVLKDGESGKSTLFVPPK 77 (134)
T ss_dssp HHHHHHHHHHSHSS----EEEEEE----EEEETTEEE-----HHHHHHH---STT-EEEEEECTTEEEEEEE---
T ss_pred HHHHHHHHHhcCCC----cEEEEECCCeeeecCCCccccccCCcEEEEeCCCCCCEEEEEecCCCCeEEEEeCCC
Confidence 46888888888864 45666655443 22 5666667889999999988888888 22 3688888643
No 73
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=82.72 E-value=10 Score=41.75 Aligned_cols=97 Identities=11% Similarity=0.021 Sum_probs=55.7
Q ss_pred CCHHHHHHHH----HHHHHHHHHHhccCCCCcccchHHHHHHH----HHHHcCC----CCcccccccccccCccccCCCc
Q 006890 447 PSAHEKACYT----AVLKGHIALGNAVFPNGTCGHTLDILARL----PLWKYGL----DYRHGTGHGVGSYLNVHEGPQS 514 (627)
Q Consensus 447 p~~e~~~~y~----~v~~~~~~~~~~~~p~G~~~~~l~~~a~~----~l~~~G~----~~~h~~GHgvG~~l~vhE~P~~ 514 (627)
-++++.+.|. .+.++...+...++| |++-.+|...... .+.+.|. .|+. +=++.+. ..|-.|..
T Consensus 153 ~s~~EI~~~R~AaeIa~~vl~~~~~~Ikp-G~se~EIa~~ie~~ir~~~~~~G~~~g~aFPt--~vS~N~~-aaH~tP~~ 228 (470)
T PTZ00053 153 LSEEQYQDLRRAAEVHRQVRRYAQSVIKP-GVKLIDICERIESKSRELIEADGLKCGWAFPT--GCSLNHC-AAHYTPNT 228 (470)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHhcCCcccCCCCc--eeecCcc-ccCCCCCC
Confidence 4555544444 444455567777887 9998888775544 4444444 2322 2122211 12333331
Q ss_pred CCCCCCCCcccCCcEEeeCceeeecCccEEEEeEeeEE
Q 006890 515 ISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 515 ~~~~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V 552 (627)
+ ++.+|+.|.++.|.-|....|. -+=+.-|+++
T Consensus 229 ---g-d~~vLk~GDvVkID~G~~vdGY-iaD~ArTv~v 261 (470)
T PTZ00053 229 ---G-DKTVLTYDDVCKLDFGTHVNGR-IIDCAFTVAF 261 (470)
T ss_pred ---C-CCcEecCCCeEEEEEeEEECCE-EEeEEEEEEe
Confidence 1 3578999999999999877653 3334455554
No 74
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=80.38 E-value=18 Score=41.47 Aligned_cols=113 Identities=11% Similarity=0.138 Sum_probs=70.7
Q ss_pred ccccccccCceEEEEeCCceEEEEcchhH---HHHhc--ccc---CcEEEE-Ec-CCC-CCHHHHHHhhCC-CCCEEEEc
Q 006890 43 EFVSGFTGSAGLALITMNEALLWTDGRYF---LQATQ--ELT---GEWKLM-RM-LED-PAVDVWMANNLP-NDAAIGVD 110 (627)
Q Consensus 43 ~ylTGFtgs~g~~vvt~~~a~l~tD~RY~---~qA~~--~~~---~~~~~~-~~-~~~-~~~~~~l~~~l~-~~~~vg~d 110 (627)
-||-|+.-..-++|++++.-+++|-.+=. .++.. +.+ ..+.+. +. .+. ....+-|.+.++ .+++||+=
T Consensus 21 ~WLlGYEfpdTilv~~~~~i~iltSkkKa~~l~~~~~~~~~~~~~~~v~llvR~k~d~n~~~fdkii~~ik~~gk~vGvf 100 (960)
T KOG1189|consen 21 TWLLGYEFPDTILVLCKDKIYILTSKKKAEFLQKVTNLAQSSEGKPTVNLLVRDKNDDNKGLFDKIIKAIKSAGKKVGVF 100 (960)
T ss_pred HHHhccccCceEEEEecCcEEEEecchhHHHHHhhcccccCcccCcceEEEecccCccccccHHHHHHHHHhcCCeeeee
Confidence 48999988777788888887777755432 23211 111 123322 21 221 222233434443 45788875
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCeEEecCcChhhHhhhcCCCCCCCcc
Q 006890 111 P-WCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPV 156 (627)
Q Consensus 111 ~-~~~s~~~~~~l~~~l~~~~~~l~~~~~~lid~lr~~k~~~e~~~i 156 (627)
+ +.++-.+...+...+...+++.+++ +-.+..+|.+|+..|.+.|
T Consensus 101 ~ke~~~G~F~~~W~~~l~~~~fn~vDi-s~~ls~l~avKDd~Ei~~i 146 (960)
T KOG1189|consen 101 AKEKFQGEFMESWNKRLEAGGFNKVDI-SLGLSKLFAVKDDEEIANI 146 (960)
T ss_pred cccccchhHHHHHHHHhhhcCCceeeh-hhhhhhheeeccHHHHHHH
Confidence 4 4566677888888888778888888 6668999999999985544
No 75
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=77.05 E-value=5.8 Score=37.32 Aligned_cols=134 Identities=15% Similarity=0.155 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhcCC----CCceEEEEcCCC-CcCccCcCccccccccccccccCceEEEEeCCceEEEEcc---hhHHH
Q 006890 2 AEILAALRSLMSSHD----PPLHALVVPSED-YHQSEYVSARDKRREFVSGFTGSAGLALITMNEALLWTDG---RYFLQ 73 (627)
Q Consensus 2 ~~Rl~~Lr~~m~~~~----~~~Da~li~~~d-~h~sey~~~~~~~~~ylTGFtgs~g~~vvt~~~a~l~tD~---RY~~q 73 (627)
.+||++|.+..++.+ .++||++|.... ..-+.|.=- -.--.||.||.-..-++++|+++-+++|-. .|..|
T Consensus 7 ~~RL~~L~~~W~~~~~~~~~~~dal~i~~G~~~e~~~Y~Ks-~aLq~WLlGYEfpdTiiv~tk~~i~~ltS~KKa~~L~~ 85 (163)
T PF14826_consen 7 HKRLKRLYSSWKEHKDDLWGGADALVIAVGKADEDNPYSKS-TALQTWLLGYEFPDTIIVFTKKKIHFLTSKKKAKFLEP 85 (163)
T ss_dssp HHHHHHHHHHHHCCCHHTSTT-SEEEEEE-S--TTSTT-HH-HHHHHHHHSS--SSEEEEEETTEEEEEEEHHHHHCCCC
T ss_pred HHHHHHHHHHHhccCccccCCCCEEEEEeCCcccCccchhH-HHHHHHHhcccHhhhhhhhcCCEEEEEeCHHHHHHHHH
Confidence 479999999998873 258999887663 223333311 112359999988888889999988888865 34445
Q ss_pred Hhccc----cCcEEEEEcC-CC----CCHHHHHHhhCC-CCCEEEEcCC-CCCHHHHHHHHHHHHhcCCeEEec
Q 006890 74 ATQEL----TGEWKLMRML-ED----PAVDVWMANNLP-NDAAIGVDPW-CVSIDTAQRWERAFAKKQQKLVQT 136 (627)
Q Consensus 74 A~~~~----~~~~~~~~~~-~~----~~~~~~l~~~l~-~~~~vg~d~~-~~s~~~~~~l~~~l~~~~~~l~~~ 136 (627)
.++.. ...+++..-. .+ ....+-+.+.++ .+++||+=.+ ...=.+.+.+.+.+.+.+++.+++
T Consensus 86 l~~~~~~~~~~~v~ll~R~k~d~~~~~~~f~kl~~~ik~~g~~vG~~~Kd~~~G~f~~~w~~~l~~~~~~~vDv 159 (163)
T PF14826_consen 86 LKKPAKEGGSIPVELLVRNKKDPEKNKANFEKLIEAIKKAGKKVGVLAKDKFEGKFVDEWKEALKKSGFEKVDV 159 (163)
T ss_dssp HCCCTTTT-SSEEEEEEE-TT-HHHHHHHHHHHHHHHHCCTSEEEE-TT----SHHHHHHHHHHCHHCSEEEE-
T ss_pred HhhccccCCCceEEEEEeCCCCccchHHHHHHHHHHHHhcCCeEeEecCCCCCCchHHHHHHHHhhcCCceeec
Confidence 55321 1134444322 22 111122344443 5678998653 333456778888887777888877
No 76
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=72.77 E-value=19 Score=35.69 Aligned_cols=95 Identities=13% Similarity=-0.039 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC--cccchHHHHHHHHHHHcC-C---CCcccccccccccCccccCCCcCCCCCCCCcc
Q 006890 451 EKACYTAVLKGHIALGNAVFPNG--TCGHTLDILARLPLWKYG-L---DYRHGTGHGVGSYLNVHEGPQSISFKPRNVPI 524 (627)
Q Consensus 451 ~~~~y~~v~~~~~~~~~~~~p~G--~~~~~l~~~a~~~l~~~G-~---~~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l 524 (627)
+.+.-..+.++...+.+.++| | ++-.+|++.+.+.+...| + .|+..+.=|... ..+|-.|.. . ++.+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~i~~-G~~~tE~eiaa~~~~~~~~~g~~~~~~f~~~v~~g~n~-~~~H~~p~~---~-~~r~l 79 (224)
T cd01085 6 HIRDGVALVEFLAWLEQEVPK-GETITELSAADKLEEFRRQQKGYVGLSFDTISGFGPNG-AIVHYSPTE---E-SNRKI 79 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-CCCEeHHHHHHHHHHHHHHcCCCcCCCcceEEEecCcc-CcCCCCcCc---c-cCccc
Confidence 444445556777788888987 9 899999999887776554 1 122222222210 012222210 0 26789
Q ss_pred cCCcEEeeCceeeecCccEEEEeEeeEE
Q 006890 525 HASMTATDEPGYYEDGNFGIRLENVLVV 552 (627)
Q Consensus 525 ~~Gmv~siEPg~y~~~~~GvriEd~v~V 552 (627)
++|.++.++-|....| |-.-+.-|++|
T Consensus 80 ~~GD~V~iD~g~~~~g-Y~aD~~RT~~v 106 (224)
T cd01085 80 SPDGLYLIDSGGQYLD-GTTDITRTVHL 106 (224)
T ss_pred CCCCEEEEEeCccCCC-cccccEEeecC
Confidence 9999999999886654 44445555555
No 77
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=56.26 E-value=47 Score=34.06 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=48.0
Q ss_pred HHHHHHHHhccCCCCcccchHH----HHHHHHHHHcCCC--CcccccccccccCccccCCCcCCCCCCCCcccCCcEEee
Q 006890 459 LKGHIALGNAVFPNGTCGHTLD----ILARLPLWKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATD 532 (627)
Q Consensus 459 ~~~~~~~~~~~~p~G~~~~~l~----~~a~~~l~~~G~~--~~h~~GHgvG~~l~vhE~P~~~~~~~~~~~l~~Gmv~si 532 (627)
+++...+.+-++| |++.-+|- .-.|..+.+.|+. ....||-++-++ ..|-.|.. + +..+|+.+.|+-+
T Consensus 96 RqvR~yv~s~ikP-Gmtm~ei~e~iEnttR~li~e~gl~aGi~FPtG~SlN~c-AAHyTpNa---G-d~tVLqydDV~Ki 169 (397)
T KOG2775|consen 96 RQVRKYVQSIIKP-GMTMIEICETIENTTRKLILENGLNAGIGFPTGCSLNHC-AAHYTPNA---G-DKTVLKYDDVMKI 169 (397)
T ss_pred HHHHHHHHHhccC-cccHHHHHHHHHHHHHHHHHhccccccccCCCcccccch-hhhcCCCC---C-CceeeeecceEEE
Confidence 3344456677887 99887764 4556777777763 333455555443 34666653 2 5688999999888
Q ss_pred Cceeeec
Q 006890 533 EPGYYED 539 (627)
Q Consensus 533 EPg~y~~ 539 (627)
.-|....
T Consensus 170 DfGthi~ 176 (397)
T KOG2775|consen 170 DFGTHID 176 (397)
T ss_pred ecccccc
Confidence 8777654
No 78
>PF14980 TIP39: TIP39 peptide
Probab=51.59 E-value=8.5 Score=27.68 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=13.2
Q ss_pred cCCCHHHH-HHHHHHHHHHH
Q 006890 585 KSLTPEEI-DWLNAYHSKCR 603 (627)
Q Consensus 585 ~~l~~~e~-~~ln~y~~~~~ 603 (627)
.+|+.-|+ .|||.|-++..
T Consensus 28 rLl~amER~~WLnSYMqkLL 47 (51)
T PF14980_consen 28 RLLTAMERQKWLNSYMQKLL 47 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666665 59999987654
No 79
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=51.05 E-value=1.2e+02 Score=30.31 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=45.7
Q ss_pred CCCcCHHHHHHHHHHHHHhhcCC-CCCcCCcccccCCCcccccccC---CCCccCCCCCCCeEEEeecce-ec-------
Q 006890 365 TVKLTEVTVSDKLESFRASKEHF-RGLSFPTISSVGPNAAIMHYSP---QSETCAEMDPNSIYLCDSGAQ-YQ------- 432 (627)
Q Consensus 365 ~~g~tE~ei~~~l~~~~~~~~g~-~~~~f~~i~~~G~n~a~~h~~~---~~~~~~~l~~gd~vliD~g~~-y~------- 432 (627)
+||++=.++...+.+...+. +. ....|..-++.|--- -.|=.| +..++++|++|-++.+..|.. +.
T Consensus 140 kpG~~~~dv~~~a~~~i~~~-~~~~~~~~~~~~GHgiGl-e~hE~~~~l~~~~~~~L~~GMvf~vepGi~~~~~~~~~~~ 217 (243)
T cd01091 140 KPGAKLSDVYQKTLDYIKKK-KPELEPNFTKNLGFGIGL-EFRESSLIINAKNDRKLKKGMVFNLSIGFSNLQNPEPKDK 217 (243)
T ss_pred CCCCcHHHHHHHHHHHHHHh-ChhHHHhCcCCcccccCc-ccccCccccCCCCCCCcCCCCEEEEeCCcccccCccccCc
Confidence 79999999998888766432 21 111222112211100 011111 122347899999999999975 32
Q ss_pred ---CcccceEEEEecCC
Q 006890 433 ---DGTTDITRTFHFGK 446 (627)
Q Consensus 433 ---gy~~D~tRT~~~G~ 446 (627)
.|..=++-|+.|.+
T Consensus 218 ~~~~~gv~ieDtV~Vt~ 234 (243)
T cd01091 218 ESKTYALLLSDTILVTE 234 (243)
T ss_pred cCCeeEEEEEEEEEEcC
Confidence 35566788888854
No 80
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=40.73 E-value=26 Score=30.85 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=19.1
Q ss_pred ccccCCCHHHHH--HHHHHHHHHHHH
Q 006890 582 INLKSLTPEEID--WLNAYHSKCRDI 605 (627)
Q Consensus 582 i~~~~l~~~e~~--~ln~y~~~~~~~ 605 (627)
+|.+-|+.+|.- |||-||..+...
T Consensus 2 v~~~~l~~~e~lAFwIN~yNal~~h~ 27 (117)
T PF04784_consen 2 VDLSSLSREEKLAFWINLYNALVLHA 27 (117)
T ss_pred cChHHCCHHHHHHHHHHHHHHHHHHH
Confidence 456667888877 999999998664
No 81
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=29.20 E-value=2.3e+02 Score=30.08 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHH-------------cCCCCcccccccccccCccccCCCcCCC
Q 006890 451 EKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWK-------------YGLDYRHGTGHGVGSYLNVHEGPQSISF 517 (627)
Q Consensus 451 ~~~~y~~v~~~~~~~~~~~~p~G~~~~~l~~~a~~~l~~-------------~G~~~~h~~GHgvG~~l~vhE~P~~~~~ 517 (627)
.|..=+.+-++...+.+.+.| |++..+|-......+.+ .|.-|+ |-=.|-.+ ..|=.|... .
T Consensus 24 Yk~AgeI~n~~lk~V~~~~~~-gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfP--T~Isvnnc-v~h~sPlks-d 98 (398)
T KOG2776|consen 24 YKMAGEIVNKVLKSVVELCQP-GASVREICEKGDSLILEETGKIYKKEKDFEKGIAFP--TSISVNNC-VCHFSPLKS-D 98 (398)
T ss_pred hhhHHHHHHHHHHHHHHHhcC-CchHHHHHHhhhHHHHHHHHHHHhhhhhhhcccccc--ceecccce-eeccCcCCC-C
Confidence 344455666677788888887 99998886555444332 132222 11111111 113344421 1
Q ss_pred CCCCCcccCCcEEeeCceeeecCccEEEEeEeeEEecC
Q 006890 518 KPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDA 555 (627)
Q Consensus 518 ~~~~~~l~~Gmv~siEPg~y~~~~~GvriEd~v~V~~~ 555 (627)
.+..|++|.|+-|.-|..++| |-.-+..|++|++.
T Consensus 99 --~~~~Lk~GDvVKIdLG~HiDG-fiA~vaHT~VV~~~ 133 (398)
T KOG2776|consen 99 --ADYTLKEGDVVKIDLGVHIDG-FIALVAHTIVVGPA 133 (398)
T ss_pred --CcccccCCCEEEEEeeeeecc-ceeeeeeeEEeccC
Confidence 367899999999999999886 55668899999764
No 82
>TIGR03241 arg_catab_astB succinylarginine dihydrolase. Members of this family are succinylarginine dihydrolase (EC 3.5.3.23), the second of five enzymes in the arginine succinyltransferase (AST) pathway.
Probab=28.35 E-value=1.8e+02 Score=31.22 Aligned_cols=138 Identities=18% Similarity=0.188 Sum_probs=83.0
Q ss_pred cccccccccCCcHHHHHHHHHHHhhccCCcEEEEecCCc--------cceEEccccCCCCCCcceeEEEEEE-CCceEEE
Q 006890 156 VTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTLDE--------VAWLYNIRGTDVPYCPVVHAFAIVT-TNAAFLY 226 (627)
Q Consensus 156 i~~~~~~~~G~~~~~ri~~lr~~m~~~~~d~lll~~~dn--------i~wLtg~rg~d~~~~P~~~a~~lv~-~~~~~L~ 226 (627)
+|.|...|. ...+.++.||++|...+.+..+|.-++. -.||+| +-++-. .++..|+
T Consensus 259 Lf~He~AF~--d~~~~~~~ir~k~~~~~~~~~~ieVp~~~vsv~DAV~sYLFN-------------SQLlt~pdg~M~Lv 323 (443)
T TIGR03241 259 LFHHQQAFL--NQSQVLDELRAKLAGLGQQFVAIEVPDAEVSVADAVSSYLFN-------------SQLLSREDGKMMLV 323 (443)
T ss_pred eeEhHhhhc--CHHHHHHHHHHHhhccCCCeEEEEeccccCcHHHHHHHhhhc-------------ceeeecCCCcEEEE
Confidence 366777774 4567789999999766666666665543 145544 334433 3445566
Q ss_pred EeCCCCCHHHHHhhhhCCeEEeeCCchhHHHHHHhhccCCCCCCCCCCCEEEEcCCCCcHHHHhhcCCCeEEecCCccch
Q 006890 227 VDKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLNSDKVLLQQSPLAL 306 (627)
Q Consensus 227 v~~~~~~~~~~~~l~~~~v~v~~y~~~~~~~~~~~~~~l~~~~~~~~~~~I~iD~~~~~~~~~~~l~~~~~~~~~~~i~~ 306 (627)
++..- ++ -..++.++..+..+-. +-.....+|. .+.+... ..+.+.+
T Consensus 324 ~P~Ec-----r~-----------n~~v~~yl~~l~~~~~------PI~~v~~fDl-------rqSM~NG----GGPACLR 370 (443)
T TIGR03241 324 VPEEC-----RE-----------NAAVWAYLNELVAGGG------PIDEVRVFDL-------RESMRNG----GGPACLR 370 (443)
T ss_pred echHh-----hc-----------CHHHHHHHHHHHhcCC------CcceEEEecc-------hhhhhcC----CCceeee
Confidence 55321 11 1233444444432100 1122334442 2222211 2356889
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006890 307 AKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQM 341 (627)
Q Consensus 307 ~r~iK~~~Ei~~~r~A~~~~~~a~~~~~~~l~~~~ 341 (627)
+|.+-|+.|++.+-.+..+++.-+..+-.|++...
T Consensus 371 LRVvl~~~E~~Avnp~~lm~~~l~~~L~~wV~~hY 405 (443)
T TIGR03241 371 LRVVLNDAELAAVNPAVMMNDALFATLNAWVDRHY 405 (443)
T ss_pred eeeeCCHHHHhhcCcceecCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998899999997764
No 83
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=27.53 E-value=1.2e+02 Score=28.36 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHhhccC------CcEEEEecCC---c---------cceEEccccCCCCCCcceeEEEEEECCceEEEEe
Q 006890 167 SVVEKLKELREKLTNEK------ARGIIITTLD---E---------VAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVD 228 (627)
Q Consensus 167 ~~~~ri~~lr~~m~~~~------~d~lll~~~d---n---------i~wLtg~rg~d~~~~P~~~a~~lv~~~~~~L~v~ 228 (627)
.+.+|+++|.+..++.. +|++++.... + -.||+|+.=.| ...+++++..+++++
T Consensus 5 ~F~~RL~~L~~~W~~~~~~~~~~~dal~i~~G~~~e~~~Y~Ks~aLq~WLlGYEfpd--------Tiiv~tk~~i~~ltS 76 (163)
T PF14826_consen 5 TFHKRLKRLYSSWKEHKDDLWGGADALVIAVGKADEDNPYSKSTALQTWLLGYEFPD--------TIIVFTKKKIHFLTS 76 (163)
T ss_dssp HHHHHHHHHHHHHHCCCHHTSTT-SEEEEEE-S--TTSTT-HHHHHHHHHHSS--SS--------EEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCccccCCCCEEEEEeCCcccCccchhHHHHHHHHhcccHhh--------hhhhhcCCEEEEEeC
Confidence 57889999999998875 7888776552 2 47999876333 455678888887776
Q ss_pred CCC
Q 006890 229 KRK 231 (627)
Q Consensus 229 ~~~ 231 (627)
..+
T Consensus 77 ~KK 79 (163)
T PF14826_consen 77 KKK 79 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 84
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=24.50 E-value=1.4e+02 Score=23.41 Aligned_cols=57 Identities=18% Similarity=0.351 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcCCeEEecCcChhhHhhhcCCCCCCCccccccccccCCcHHHHHHHHHHHhhccCC
Q 006890 114 VSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEKA 184 (627)
Q Consensus 114 ~s~~~~~~l~~~l~~~~~~l~~~~~~lid~lr~~k~~~e~~~i~~~~~~~~G~~~~~ri~~lr~~m~~~~~ 184 (627)
+|..++.-|.-.+... -+.+.- +.+++.+|...... +..+....+.+||+.++..+.
T Consensus 6 Lt~~e~~lL~~L~~~~-~~~vs~-~~l~~~~w~~~~~~------------~~~~l~~~I~rLR~kL~~~~~ 62 (77)
T PF00486_consen 6 LTPKEFRLLELLLRNP-GRVVSR-EELIEALWGDEEDV------------SDNSLDVHISRLRKKLEDAGG 62 (77)
T ss_dssp SSHHHHHHHHHHHHTT-TSEEEH-HHHHHHHTSSSSTT------------CTHHHHHHHHHHHHHHHSSTT
T ss_pred cCHHHHHHHHHHHhCC-CCCCCH-HHhCChhhhccccc------------chhhHHHHHHHHHHHHhhcCC
Confidence 4555665454444333 466666 88999999766522 235667789999999988653
No 85
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=22.54 E-value=6.1e+02 Score=26.53 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=53.7
Q ss_pred CEEEEcCCCCCHHHHHHHHHHHHhcC-CeEEecCcChhhHhhhcCCCCCCCccccccccccCCcHHHHHHHHHHHhhccC
Q 006890 105 AAIGVDPWCVSIDTAQRWERAFAKKQ-QKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEK 183 (627)
Q Consensus 105 ~~vg~d~~~~s~~~~~~l~~~l~~~~-~~l~~~~~~lid~lr~~k~~~e~~~i~~~~~~~~G~~~~~ri~~lr~~m~~~~ 183 (627)
..|||||....+.+++.+++.+.... +.+.+ --|+.+-. ....+-|+.+-+-|.-.+-..-+..+++.|+.-|
T Consensus 140 ~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp---lgvE~Lp~---~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gG 213 (315)
T PF08003_consen 140 SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP---LGVEDLPN---LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGG 213 (315)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCCccEEEcC---cchhhccc---cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCC
Confidence 46999999999999988888774321 22222 24666543 2346778899999999999999999999998644
No 86
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=20.48 E-value=2.2e+02 Score=22.13 Aligned_cols=57 Identities=14% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhcCCeEEecCcChhhHhhhcCCCCCCCccccccccccCCcHHHHHHHHHHHhhccC
Q 006890 114 VSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTNEK 183 (627)
Q Consensus 114 ~s~~~~~~l~~~l~~~~~~l~~~~~~lid~lr~~k~~~e~~~i~~~~~~~~G~~~~~ri~~lr~~m~~~~ 183 (627)
+|...++-| ..|-...-..+.- +.+++.+|...++.. +-.+....+.+||+.+...+
T Consensus 6 Lt~~e~~lL-~~L~~~~~~~vs~-~~l~~~lw~~~~~~~-----------~~~~l~~~i~~LR~~l~~~~ 62 (78)
T smart00862 6 LTPKEFRLL-ELLLRNPGRVVSR-EELLEAVWGDDDDDV-----------DDNTLDVHISRLRKKLEDDG 62 (78)
T ss_pred cCHHHHHHH-HHHHhCCCCccCH-HHHHHHHcCCCCCCC-----------ccchHHHHHHHHHHHHhcCC
Confidence 355555533 3333222345544 789999997654111 12446678999999998754
No 87
>KOG3303 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=20.46 E-value=1e+02 Score=29.34 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCC
Q 006890 587 LTPEEIDWLNAYHSKCRDILAPYL 610 (627)
Q Consensus 587 l~~~e~~~ln~y~~~~~~~~~~~l 610 (627)
|+.+|++|+|+|.....+-.+|..
T Consensus 109 ls~~E~eyf~~Ys~~La~y~~~~g 132 (192)
T KOG3303|consen 109 LSHEEEEYFKNYSNLLAEYMGPLG 132 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcc
Confidence 788999999999998888887764
Done!