RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006890
(627 letters)
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 383 bits (985), Expect = e-131
Identities = 128/245 (52%), Positives = 167/245 (68%), Gaps = 21/245 (8%)
Query: 318 GLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKL 377
G++ AHIRDG A+V+++ WL++++ + +TE++ +DKL
Sbjct: 1 GMRAAHIRDGVALVEFLAWLEQEVPKGE---------------------TITELSAADKL 39
Query: 378 ESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTD 437
E FR ++ + GLSF TIS GPN AI+HYSP E+ ++ P+ +YL DSG QY DGTTD
Sbjct: 40 EEFRRQQKGYVGLSFDTISGFGPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYLDGTTD 99
Query: 438 ITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHG 497
ITRT H G+P+A +K YT VLKGHIAL A FP GT G LD LAR PLWK GLDY HG
Sbjct: 100 ITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYGHG 159
Query: 498 TGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDANT 557
TGHGVGS+LNVHEGPQSIS P NVP+ A M ++EPGYY++G +GIR+EN+++V +A T
Sbjct: 160 TGHGVGSFLNVHEGPQSISPAPNNVPLKAGMILSNEPGYYKEGKYGIRIENLVLVVEAET 219
Query: 558 KFNFG 562
G
Sbjct: 220 TEFGG 224
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 210 bits (536), Expect = 4e-62
Identities = 106/394 (26%), Positives = 165/394 (41%), Gaps = 47/394 (11%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWL--YNIRGTDVPYCPVVHAFAIVTTNAAFLYV 227
+L LRE + +++T+ +L ++ G + +V A L+V
Sbjct: 12 ARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVPA-----EGEPVLFV 66
Query: 228 DKRKVSS-EVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLI----WADPN 282
R + + S++K VEV + D + + L L I
Sbjct: 67 RGRDEEAAKETSWIKLENVEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTL 126
Query: 283 SCSYALYSKLNSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQ 342
+ L + L +++ + + IK+P E+ ++KA AA+ + + M
Sbjct: 127 AAFERLQAALPRAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGM- 185
Query: 343 EIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNA 402
TE ++ +LE K G SF TI + G NA
Sbjct: 186 --------------------------TEAEIAAELEYALR-KGGAEGPSFDTIVASGENA 218
Query: 403 AIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGH 462
A+ HY+P + + L D G Y +DITRTF GKPS ++ Y AVL+
Sbjct: 219 ALPHYTPSDRK---LRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQ 275
Query: 463 IALGNAVFPNGTCGHTLDILARLPLWK--YGLDYRHGTGHGVGSYLNVHEGPQSISFKPR 520
A A+ P G G +D AR L K YGL + HGTGHGVG L+VHE PQ +S
Sbjct: 276 EAAIAAIRP-GVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYLS-PGS 333
Query: 521 NVPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 554
+ + M + EPG Y G G+R+E+ ++VT+
Sbjct: 334 DTTLEPGMVFSIEPGIYIPGGGGVRIEDTVLVTE 367
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 178 bits (454), Expect = 2e-52
Identities = 69/189 (36%), Positives = 100/189 (52%), Gaps = 9/189 (4%)
Query: 369 TEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSG 428
TE ++ +LE+ ++ RG +FP I + GPNAA+ HY P + + L D G
Sbjct: 26 TERELAAELEAAFLARGGARGPAFPPIVASGPNAAVPHYIPSDRV---LKDGDLVLIDVG 82
Query: 429 AQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLW 488
A+Y +DITRTF GKP+ ++ Y AVL+ A AV P G G +D AR L
Sbjct: 83 AEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQEAAIAAVKP-GVTGGDVDAAAREVLE 141
Query: 489 KYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYE-DGNFGIR 545
+ G + HG GHG+G L+VH+ IS + + M T EPG Y G G+R
Sbjct: 142 EGGYGEYFPHGLGHGIG--LDVHDEGPYISRGGNDRVLEPGMVFTIEPGIYFIPGWGGVR 199
Query: 546 LENVLVVTD 554
+E+ ++VT+
Sbjct: 200 IEDTVLVTE 208
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 131 bits (332), Expect = 4e-35
Identities = 69/193 (35%), Positives = 95/193 (49%), Gaps = 13/193 (6%)
Query: 365 TVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYL 424
+TE V+ +LE F G SF TI + GPN+A+ H P + +++ + L
Sbjct: 23 KPGMTEREVAAELEYFMRKLGA-EGPSFDTIVASGPNSALPHGVP---SDRKIEEGDLVL 78
Query: 425 CDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILAR 484
D GA Y +DITRT G+PS K Y VL+ A AV P T +D AR
Sbjct: 79 IDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKE-VDKAAR 137
Query: 485 LPLWKYGL-DY-RHGTGHGVGSYLNVHEGPQSISFKPRN-VPIHASMTATDEPGYYEDGN 541
+ + G +Y H TGHGVG L VHE P P + + M T EPG Y G
Sbjct: 138 DVIEEAGYGEYFIHRTGHGVG--LEVHEAP---YISPGSDDVLEEGMVFTIEPGIYIPGK 192
Query: 542 FGIRLENVLVVTD 554
G+R+E+ ++VT+
Sbjct: 193 GGVRIEDDVLVTE 205
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 113 bits (285), Expect = 8e-29
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 10/181 (5%)
Query: 376 KLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGT 435
+A + + PTI G A+ HY P + + L D G Y
Sbjct: 32 AAAIEQALRAAGGYPAGPTIVGSGARTALPHYRPDDRR---LQEGDLVLVDLGGVYDGYH 88
Query: 436 TDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPL--WKYGLD 493
D+TRTF G+PS ++ Y AV + A A+ P T +D AR L G +
Sbjct: 89 ADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEE-VDAAAREVLEEHGLGPN 147
Query: 494 YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 553
+ H TGHG+G L +HE P + + M EPG Y G G+R+E+ ++VT
Sbjct: 148 FGHRTGHGIG--LEIHEPPVLKAGDDT--VLEPGMVFAVEPGLYLPGGGGVRIEDTVLVT 203
Query: 554 D 554
+
Sbjct: 204 E 204
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 85.3 bits (212), Expect = 1e-18
Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 36/198 (18%)
Query: 390 LSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPS 448
L++ I + G NAAI+HY + + D + L D+GA+Y +DITRTF GK +
Sbjct: 46 LAYSYIVAAGSNAAILHYVHNDQPLKDGD---LVLIDAGAEYGGYASDITRTFPVNGKFT 102
Query: 449 AHEKACYTAVLKGHIALGNAVFPNG--------TCGHTLDILARLPLWKYGLD------- 493
++ Y AVL A A P + L L + K +D
Sbjct: 103 DEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGA 162
Query: 494 ----YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY---EDGNF---- 542
+ HG GH +G L+VH+ + + R P+ M T EPG Y + +
Sbjct: 163 YAKFFPHGLGHYLG--LDVHDVGGYLRYLRRARPLEPGMVITIEPGIYFIPDLLDVPEYF 220
Query: 543 ---GIRLE-NVLVVTDAN 556
GIR+E +VLV D
Sbjct: 221 RGGGIRIEDDVLVTEDGP 238
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 70.4 bits (172), Expect = 6e-13
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF---GKP 447
SF TI + G A+ H + A + ++ D GA YQ +D+TRT G
Sbjct: 180 SFDTIVASGWRGALPHGKASDKIVAAGEFVTL---DFGALYQGYCSDMTRTLLVNGEGVS 236
Query: 448 SAHEK--ACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWK--YGLDYRHGTGHGVG 503
+ Y VL+ +A +A+ P G +D AR + + YG + H TGH +G
Sbjct: 237 AESHPLFNVYQIVLQAQLAAISAIRP-GVRCQQVDDAARRVITEAGYGDYFGHNTGHAIG 295
Query: 504 SYLNVHEGPQSISFKPR-NVPIHASMTATDEPGYYEDGNFGIRLENVLVVT 553
+ VHE P+ F PR + M T EPG Y G G+R+E+V++VT
Sbjct: 296 --IEVHEDPR---FSPRDTTTLQPGMLLTVEPGIYLPGQGGVRIEDVVLVT 341
Score = 33.0 bits (75), Expect = 0.43
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 35 VSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVD 94
+S+R ++ + G + +G +I+ A + D RY+ A E + + +L+
Sbjct: 21 LSSRQNKQPHL-GISTGSGYVVISRESAHILVDSRYY--ADVEARAQGYQLHLLDATNTL 77
Query: 95 VWMANNLPND---AAIGVDPWCVSIDTAQRWE 123
+ N + D +G + VS +TA RW+
Sbjct: 78 TTIVNQIIADEQLQTLGFEGQQVSWETAHRWQ 109
>gnl|CDD|216431 pfam01321, Creatinase_N, Creatinase/Prolidase N-terminal domain.
This family includes the N-terminal non-catalytic
domains from creatinase and prolidase. The exact
function of this domain is uncertain.
Length = 128
Score = 62.3 bits (152), Expect = 8e-12
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 28/146 (19%)
Query: 5 LAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLAL-ITMNEAL 63
L LR LM+ L AL++ S + +++GFTGS GLAL +T + A
Sbjct: 2 LERLRELMAEAG--LDALLLTSPE------------NIRYLTGFTGSRGLALVVTADGAT 47
Query: 64 LWTD-GRYFLQATQELTG----EWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDT 118
L TD RY A + + E+ L D + +G + +++
Sbjct: 48 LLTDALRYTEAAEESVPDLEVIEYDDAEALAD-----LLKELGLELKRLGFEGDHLTVAE 102
Query: 119 AQRWERAFAKKQQKLVQTSTNLVDKV 144
+R + A + LV S L++++
Sbjct: 103 YERLKEALPDAE--LVDAS-GLIEEL 125
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 59.0 bits (143), Expect = 3e-09
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 46/199 (23%)
Query: 391 SFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GKPSA 449
S+ TI G N I+HY+ E +EM + L D+G +Y+ DITRTF GK +
Sbjct: 226 SYNTIVGSGENGCILHYT---ENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTP 282
Query: 450 HEKACYTAVLKGHIALGNAVFPNGTC-----GHTLDI----LARLPLWKYGLD------- 493
++ Y VL+ + ++ GT G + I L +L + K +D
Sbjct: 283 AQREIYDIVLES-LETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENA 341
Query: 494 YR----HGTGHGVGSYLNVHE----GPQSISFKPRNVPIHASMTATDEPGYY-------- 537
+R HG H +G L+VH+ G R+ + M T EPG Y
Sbjct: 342 HRPFFMHGLSHWLG--LDVHDVGVYGQD------RSRILEPGMVLTVEPGLYIAPDADVP 393
Query: 538 -EDGNFGIRLENVLVVTDA 555
+ GIR+E+ +V+T+
Sbjct: 394 EQYRGIGIRIEDDIVITET 412
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 48.1 bits (114), Expect = 8e-06
Identities = 64/266 (24%), Positives = 102/266 (38%), Gaps = 61/266 (22%)
Query: 308 KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVK 367
+ IK+P E++ H+R A I +Y G A+ KK
Sbjct: 175 RMIKSPWEIE-----HLRKSAEITEY--------------------GIASAAKKIRVGCT 209
Query: 368 LTEVTVSDKLESFRASKEHFRGLSFPTIS--SVGPNAAIMHYSPQ---SETCAEMDPNSI 422
E+T + F+A+ F +F + SVG N +SP+ T A+ +
Sbjct: 210 AAELTAA-----FKAAVMSFPETNFSRFNLISVGDN-----FSPKIIADTTPAK--VGDL 257
Query: 423 YLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFP----NGTCGHT 478
D G D+ RTF G+P + Y + GH + + V P T
Sbjct: 258 IKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDST 317
Query: 479 LDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGP-----QSISFKPRNVPIHASMTATDE 533
+ ++ L Y R GHG G +L + E P + +F P M + E
Sbjct: 318 MAVIKTSGLPHY---NRGHLGHGDGVFLGLEEVPFVSTQATETFCP-------GMVLSLE 367
Query: 534 PGYYEDGNFGIRLENVLVVTDANTKF 559
YY G I LE+++++TD+ +F
Sbjct: 368 TPYYGIGVGSIMLEDMILITDSGFEF 393
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 37.5 bits (88), Expect = 0.012
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 498 TGHGVGSYLNVHEGPQSISFKPR---NVPIHASMTATDEP 534
TGHGVG ++HE P I N + MT EP
Sbjct: 172 TGHGVG--RSLHEEPSVILTYTDPLPNRLLRPGMTLAVEP 209
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 38.1 bits (88), Expect = 0.013
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 24/198 (12%)
Query: 370 EVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGA 429
E+T + K S+ HF + SVG + + ++ C+ + D G
Sbjct: 213 ELTAAYKAAVMSKSETHFSRFH---LISVGADFSPKLIPSNTKACS----GDLIKFDCGV 265
Query: 430 QYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWK 489
DI RTF G+P + Y + GH + + V P D + + K
Sbjct: 266 DVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEV-IKK 324
Query: 490 YGL-DYRHG-TGHGVGSYLNVHEGPQSISFKPRNVPIHAS------MTATDEPGYYEDGN 541
GL +Y G GHG G +L + E P V HA+ M + E YY
Sbjct: 325 SGLPNYNRGHLGHGNGVFLGLEESP--------FVSTHATESFTSGMVLSLETPYYGYNL 376
Query: 542 FGIRLENVLVVTDANTKF 559
I +E+++++ +F
Sbjct: 377 GSIMIEDMILINKEGIEF 394
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 37.6 bits (88), Expect = 0.014
Identities = 40/163 (24%), Positives = 55/163 (33%), Gaps = 25/163 (15%)
Query: 383 SKEHFRGLSFPTISSVGPNAAIMHYSP-QSETCAEMDPNSIYLCDSGAQYQDGTTDITRT 441
+ ++G FPT SV N + H P + E D I D GA D T
Sbjct: 57 AFLGYKGFPFPTCISV--NEVVAHGIPGDKKVLKEGDIVKI---DVGAHIDGYIGDTAIT 111
Query: 442 FHFGKPSAHEKACYTAVLKGHIALG-NAVFPNGTC---GHTLDILARLPLWKYGL----D 493
F G+ S + K + G AV P G + A G +
Sbjct: 112 FVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAE----SRGFSVVRN 167
Query: 494 YRHGTGHGVGSYLNVHEGPQSISFKPR--NVPIHASMTATDEP 534
TGHG+G +HE P ++ V + M EP
Sbjct: 168 L---TGHGIG--RELHEEPSIPNYGKDGTGVRLKEGMVFAIEP 205
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 37.8 bits (87), Expect = 0.015
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 24/198 (12%)
Query: 370 EVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGA 429
E+T + K S+ HF + SVG + + ++ C+ + D G
Sbjct: 130 ELTAAYKAAVMSKSETHFSRFH---LISVGADFSPKLIPSNTKACS----GDLIKFDCGV 182
Query: 430 QYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWK 489
DI RTF G+P + Y + GH + + V P D + + K
Sbjct: 183 DVDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEV-IKK 241
Query: 490 YGL-DYRHG-TGHGVGSYLNVHEGPQSISFKPRNVPIHAS------MTATDEPGYYEDGN 541
GL +Y G GHG G +L + E P V HA+ M + E YY
Sbjct: 242 SGLPNYNRGHLGHGNGVFLGLEESP--------FVSTHATESFTSGMVLSLETPYYGYNL 293
Query: 542 FGIRLENVLVVTDANTKF 559
I +E+++++ +F
Sbjct: 294 GSIMIEDMILINKEGIEF 311
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase. Members
of this family are N-carbamoylputrescine amidase
(3.5.1.53). Bacterial genes are designated AguB. The
AguAB pathway replaces SpeB for conversion of agmatine
to putrescine in two steps rather than one [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 279
Score = 31.9 bits (73), Expect = 0.78
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 18/93 (19%)
Query: 106 AIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAG 165
AIG +P +D+ W+R Q + NLV V NR + T + F G
Sbjct: 175 AIGSEPHDPDLDSRDHWQRV----MQG--HAAANLVPVVAANR--IGTEIGDGGEQTFYG 226
Query: 166 SSVV-----EKLKELREKLTNEKARGIIITTLD 193
SS + E + E +++ T D
Sbjct: 227 SSFIADHTGELVAEA-----GRSEEAVLVATFD 254
>gnl|CDD|182270 PRK10151, PRK10151, ribosomal-protein-L7/L12-serine
acetyltransferase; Provisional.
Length = 179
Score = 31.3 bits (71), Expect = 0.88
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 1 MAEILA-----ALRSLMSSHDPPLHALVVPSEDYHQS-----EYVSARDKRREFVSG 47
M EI+ L ++ SH PLH LV ++ + Q ++V + + R+ V G
Sbjct: 1 MTEIIPVSESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQG 57
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 31.8 bits (73), Expect = 1.0
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 401 NAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLK 460
+AA++HY+ + + A + S +L D+GA+Y DITRT+ +A E + A++K
Sbjct: 223 HAAVLHYT-KLDHQAPAEMRS-FLIDAGAEYNGYAADITRTY-----AAKEDNDFAALIK 275
Query: 461 G 461
Sbjct: 276 D 276
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 31.8 bits (72), Expect = 1.2
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 438 ITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHG 497
++RT GKP+ AVL+G A A P TC + ++ L KYG+
Sbjct: 259 LSRTVFLGKPTQAFLDAEKAVLEGMEAGLAAAKPGNTCEDIANAFFKV-LKKYGIHKDSR 317
Query: 498 TGHGVGSYLNVHEGPQSISFKP-RNVPIHASMTATDEPG-YYEDGNFGIRLENVLVVTD 554
TG+ +G G +++S +P N + MT G + ED I E++L+
Sbjct: 318 TGYPIGLSYPPDWGERTMSLRPGDNTVLQPGMTFHFMTGLWMEDWGLEIT-ESILITET 375
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 30.8 bits (70), Expect = 1.6
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 380 FRASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAE 416
++ K+ +G++FPT + N + H+SP
Sbjct: 47 YKKEKKLEKGIAFPT--CISVNNCVCHFSPLKSDATY 81
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 31.0 bits (70), Expect = 1.9
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 380 FRASKEHFRGLSFPTISSVGPNAAIMHYSP 409
F+ KE +G++FPT + N + H+SP
Sbjct: 65 FKKEKEMEKGIAFPT--CISVNNCVGHFSP 92
>gnl|CDD|217555 pfam03433, EspA, EspA-like secreted protein. EspA is the
prototypical member of this family. EspA, together with
EspB, EspD and Tir are exported by a type III secretion
system. These proteins are essential for attaching and
effacing lesion formation. EspA is a structural protein
and a major component of a large, transiently expressed,
filamentous surface organelle which forms a direct link
between the bacterium and the host cell.
Length = 188
Score = 30.2 bits (68), Expect = 2.2
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 229 KRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYAL 288
K K+ +VI ++K++G+ V D S L + P + DL + AL
Sbjct: 96 KVKLPQDVIKYMKDNGILV---DGKSILDYLDK----YPDKGLDKGDL-----QAVKAAL 143
Query: 289 YSKLNSDKVLLQQSPLALAKAIKN 312
+ N + QS L + K +
Sbjct: 144 ENDSNRATDFVSQSQLQIQKMSQT 167
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 30.6 bits (70), Expect = 2.8
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYN-IRGTDVPYCPVVHAFAIVTTNAAFLYVD 228
+KL+EL E+ E+ +LD+ + + VD
Sbjct: 509 KKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKEEKDKETEEDEPEGPKIIVD 568
Query: 229 KRKVSSEVISFLKESGVEVR-------DYDAVSSDVV 258
R++ S V LK G EV DY VS V
Sbjct: 569 SRELRSNVARHLKRLGAEVELKTLEVGDY-VVSDRVA 604
>gnl|CDD|224859 COG1948, MUS81, ERCC4-type nuclease [DNA replication,
recombination, and repair].
Length = 254
Score = 29.6 bits (67), Expect = 3.9
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 224 FLYVDKRKVSSEVISFLKESGV-------EVRDYDAVSSDVVL 259
+ VD R++ SEV LK GV EV DY VS DV++
Sbjct: 29 VVIVDSRELRSEVPRLLKRLGVKVEVRTLEVGDY-VVSDDVIV 70
>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated.
Length = 366
Score = 29.6 bits (67), Expect = 4.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQ 31
MA I A LR+L+ P +VVP++ Y+Q
Sbjct: 75 MAAITAVLRALL----RPGDTVVVPADGYYQ 101
>gnl|CDD|132526 TIGR03487, cas_csp2, CRISPR-associated protein Cas8c/Csp2, subtype
PGING. Members of this protein family are cas, or
CRISPR-associated, proteins. The two sequences in the
alignment seed are found within cas gene clusters that
are adjacent to CRISPR DNA repeats in two members of the
order Bacteroidales, Porphyromonas gingivalis W83 and
Bacteroides forsythus ATCC 43037. This cas protein
family is unique to the Pging (Porphyromonas gingivalis)
subtype.
Length = 489
Score = 29.6 bits (66), Expect = 5.1
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 281 PNSCSYALYSKLNSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQ 340
+ + LNS ++ Q+ A K D ++ + G + +II DK
Sbjct: 25 LEEIKFEIEKALNSFRIQAQEP---FAGGSKAQFSFDKIEDGDTKKGIFLSPHIISKDKH 81
Query: 341 MQEIYGASGYFLEGE--ATKEKKHSGTVKLTEVTVSD 375
Q+++GA+ FLE + K +K E+ +S+
Sbjct: 82 AQKLWGAAAKFLEIDYLGKDNDKCDDLLKKDEIGMSE 118
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 29.9 bits (68), Expect = 5.1
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 20/72 (27%)
Query: 446 KPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSY 505
KP+ E A TA+ +A A P G + G G G+
Sbjct: 151 KPA--EDAPLTALRLAELAE-EAGLPAGALNV-------VT----------GLGAEAGAA 190
Query: 506 LNVHEGPQSISF 517
L H G ISF
Sbjct: 191 LVAHPGVDHISF 202
>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional.
Length = 493
Score = 29.8 bits (67), Expect = 5.4
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 152 ETYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTLDEVA-WLYNIRGTDVPYCP 210
TY QQ G S +K ++ +K+ ++ +G ++ VA W YN D P
Sbjct: 122 ATYQQQFQQFLTEGQSQSQKFRDEHQKI-HQFRQGDVVALPAGVAHWFYN--DGDA---P 175
Query: 211 VVHAFAIVTTNAA 223
VV + N A
Sbjct: 176 VVALYVYDINNNA 188
>gnl|CDD|150843 pfam10232, Med8, Mediator of RNA polymerase II transcription
complex subunit 8. Arc32, or Med8, is one of the
subunits of the Mediator complex of RNA polymerase II.
The region conserved contains two alpha helices
putatively necessary for binding to other subunits
within the core of the Mediator complex. The N-terminus
of Med8 binds to the essential core Head part of
Mediator and the C-terminus hinges to Med18 on the
non-essential part of the Head that also includes Med20.
Length = 226
Score = 29.1 bits (65), Expect = 5.5
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 84 LMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDK 143
L+R DP V+ WM DTA + E QQ + +N +DK
Sbjct: 94 LLRTKPDPEVEEWMKQARQKAENSTK-------DTAAKQEVEIDILQQN--KEVSNWLDK 144
Query: 144 VWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTN 181
V K R ++ EF S VE + E+ TN
Sbjct: 145 VTKLR----------EEWEFESSHRVEIEQTSEEEDTN 172
>gnl|CDD|237024 PRK11922, PRK11922, RNA polymerase sigma factor; Provisional.
Length = 231
Score = 29.2 bits (66), Expect = 6.2
Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 39/147 (26%)
Query: 5 LAALRSLMSSHDPPLHAL---VVPS----EDYHQSEYVSARDKRREFVSGFTGSAG---- 53
AA +LM H+ L+ ++ + ED Q Y+ A + F G A
Sbjct: 29 EAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRA----LGTFRGDASLSTW 84
Query: 54 LALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWC 113
L+ I +NEAL GR L+ + L M M A P + DP
Sbjct: 85 LSRIVLNEAL----GR--LRRRRRLVN-LAEMVMASTIAGGERTPLADPAE-----DP-- 130
Query: 114 VSIDTAQRWERAFAKKQ-QKLVQTSTN 139
ERA A+++ + L++ + +
Sbjct: 131 ---------ERAAARREIRALLERAID 148
>gnl|CDD|218675 pfam05648, PEX11, Peroxisomal biogenesis factor 11 (PEX11). This
family consists of several peroxisomal biogenesis factor
11 (PEX11) proteins from several eukaryotic species. The
PEX11 peroxisomal membrane proteins promote peroxisome
division in multiple eukaryotes.
Length = 225
Score = 28.8 bits (65), Expect = 8.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 560 NFGDKGYLSFEHITWA 575
N G YL F+HI W
Sbjct: 92 NLGYALYLPFDHILWL 107
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 29.2 bits (66), Expect = 8.2
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 40 KRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVD----- 94
KR G G A AL + E + + R FL+A QE +W M ED
Sbjct: 302 KRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWW-KWMEEDENNASTPIK 360
Query: 95 --VWMAN---NLPNDAAIGVD 110
MA +DA + VD
Sbjct: 361 PERVMAAIQKIADDDAVLSVD 381
>gnl|CDD|215748 pfam00147, Fibrinogen_C, Fibrinogen beta and gamma chains,
C-terminal globular domain.
Length = 221
Score = 28.6 bits (64), Expect = 9.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 28 DYHQSEYVSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYF 71
Y + +K R VSG++G+AG AL+T +++ + +G +F
Sbjct: 108 LYDKFTVGDEANKYRLSVSGYSGTAGNALMTAGDSMTYHNGMFF 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,303,614
Number of extensions: 3160464
Number of successful extensions: 2940
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2904
Number of HSP's successfully gapped: 43
Length of query: 627
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 524
Effective length of database: 6,369,140
Effective search space: 3337429360
Effective search space used: 3337429360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.9 bits)