RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 006890
(627 letters)
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 893 bits (2310), Expect = 0.0
Identities = 262/642 (40%), Positives = 379/642 (59%), Gaps = 49/642 (7%)
Query: 2 AEILAALRSLMSSHD---PPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALIT 58
+E+L LR M + + P+ A ++PS D HQSEY++ D RR FVSGF GSAG A+IT
Sbjct: 7 SELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIIT 66
Query: 59 MNEALLWTDGRYFLQATQELTGEWKLMRML--EDPAVDVWMANNLPNDAAIGVDPWCVSI 116
A +WTDGRYFLQA +++ W LM+M + P + W+ + LP + +GVDP +
Sbjct: 67 EEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPT 126
Query: 117 DTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELR 176
D ++ + L+ NLVDK+W +RP P+ +++ G S +K+ +LR
Sbjct: 127 DYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLR 186
Query: 177 EKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEV 236
K+ ++T LDE+AWL+N+RG+DV + PV ++AI+ L++D ++ +
Sbjct: 187 LKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPS 246
Query: 237 I--------SFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYAL 288
+ E ++V Y ++ S++ L AD+ + +W + SYA+
Sbjct: 247 VKEHLLLDLGLEAEYRIQVHPYKSILSELKAL-------CADLSPREKVW-VSDKASYAV 298
Query: 289 YSKLNSD-KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGA 347
+ D + + +P+ +AKA+KN E +G+++AHI+D A+ + WL+K++ +
Sbjct: 299 SETIPKDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPKG--- 355
Query: 348 SGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHY 407
+TE++ +DK E FR + F LSFPTISS GP AI+HY
Sbjct: 356 -------------------GVTEISAADKAEEFRRQQADFVDLSFPTISSTGPTGAIIHY 396
Query: 408 SPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGN 467
+P ET + + +YL DSGAQY+DGTTD+TRT HF P+A+EK C+T VLKGHIA+
Sbjct: 397 APVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSA 456
Query: 468 AVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRN-VPIHA 526
AVFP GT GH LD AR LW GLDY HGTGHGVGS+LNVHEGP IS+K + P+ A
Sbjct: 457 AVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEA 516
Query: 527 SMTATDEPGYYEDGNFGIRLENVLVVTDANTKFNFGDKGYLSFEHITWAPYQIKMINLKS 586
M TDEPGYYEDG FGIR+ENV++V TK+NF ++G L+ E +T P Q KMI++ S
Sbjct: 517 GMIVTDEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDS 576
Query: 587 LTPEEIDWLNAYHSKCRDILAPYLDEAE----LAWLKKATEP 624
LT +E DWLN YH CRD++ L + L WL + T+P
Sbjct: 577 LTDKECDWLNNYHLTCRDVIGKELQKQGRQEALEWLIRETQP 618
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 160 bits (408), Expect = 3e-44
Identities = 91/391 (23%), Positives = 155/391 (39%), Gaps = 61/391 (15%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
EK++ LR GI++T ++ N GT +++ A D
Sbjct: 5 EKIERLRSAFDEAGIDGILLTNEHSRRYMANFTGTA--------GVVLISKKRAQFITDF 56
Query: 230 RKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALY 289
R +++++ + Y+ V +++ ++ G + + ++ +Y+ Y
Sbjct: 57 R--------YVEQASKQAVGYEIVQHAGLIID--EVAKQVKELGIQKLGFEQDTLTYSSY 106
Query: 290 SKLNS--DKVLLQQSP-LALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYG 346
S D + S + + IK E+ LK+A A I D + I
Sbjct: 107 SAHKEAIDAEFIPTSGLVEKLRLIKTDSEIKILKEA-----AQIA------DAAFEHILS 155
Query: 347 ASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMH 406
+ G ++E+ VS++LE F K+ SF I + G +A+ H
Sbjct: 156 ---FIRPG-------------VSEIEVSNELE-FFMRKQGATSSSFDIIVASGLRSALPH 198
Query: 407 YSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALG 466
+ ++ D GA Y+ +DITRT G+PS K Y VL+ +
Sbjct: 199 GVA---SEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGV 255
Query: 467 NAVFPNGTCGHTLDILARLPLWKYGLD--YRHGTGHGVGSYLNVHEGPQSISFKPRN-VP 523
N + G G D L R + + G + H TGHG+G L +HE P R+
Sbjct: 256 NGIKA-GLTGREADALTRDYITEKGYGEYFGHSTGHGIG--LEIHEAP---GLAFRSDTV 309
Query: 524 IHASMTATDEPGYYEDGNFGIRLENVLVVTD 554
+ M T EPG Y G G+R+E+ ++VT
Sbjct: 310 LEPGMAVTVEPGIYIPGIGGVRIEDDIIVTS 340
Score = 58.4 bits (142), Expect = 2e-09
Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 1 MAEILAALRSLMSSHDPPLHALVV-PSEDYHQSEYVSARDKRREFVSGFTGSAGLALITM 59
E + LRS + +++ R +++ FTG+AG+ LI+
Sbjct: 3 AMEKIERLRSAFDEAG--IDGILLTNEHS-------------RRYMANFTGTAGVVLISK 47
Query: 60 NEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTA 119
A TD RY QA+++ G +++++ +V +G + ++ +
Sbjct: 48 KRAQFITDFRYVEQASKQAVG-YEIVQHAGLIIDEVAKQVKELGIQKLGFEQDTLTYSSY 106
Query: 120 QRWERAF 126
+ A
Sbjct: 107 SAHKEAI 113
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 158 bits (401), Expect = 3e-43
Identities = 85/395 (21%), Positives = 154/395 (38%), Gaps = 63/395 (15%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYC---PVVHAFAIVTTNAAFLY 226
++ + L + ++ E +I + N Y + +++ N L
Sbjct: 2 DRSERLIQLISEEGIDAFLIMNI------ENSARASSVYFSGFTGSFSIILISENTRLLI 55
Query: 227 VDKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSY 286
D R + +E+ EVR+ + L + I + S
Sbjct: 56 TDSR----YTVQAKQETDFEVREVKGGDFI------DVLKKTVNDLKIKTIALEEERVSL 105
Query: 287 ALYSKLNS--DKVLLQQSPLALAK--AIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQ 342
+L+ +++S + + +K+ E++ +K+A I ++
Sbjct: 106 SLFRRISSAFGDRKFIGIDDEVKQMRMVKDEGEIEKIKQA-----IEIS------ERAFL 154
Query: 343 EIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNA 402
E G +TE ++ LE + KE G++F TI + G +
Sbjct: 155 ETVQ---QIRAG-------------MTEKEIAALLE-YTMRKEGAEGVAFDTIVASGCRS 197
Query: 403 AIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGH 462
A+ H + ++ + + D GA Y++ DITR G+PS K ++ VL+
Sbjct: 198 ALPHGKA---SDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQ 254
Query: 463 IALGNAVFPNGTCGHTLDILARLPLWKYGL-DY-RHGTGHGVGSYLNVHEGPQSISFKPR 520
G G LD +AR + + G ++ H GHG+G L VHEGP + R
Sbjct: 255 ERALKIAKA-GVTGKLLDSVAREFIREKGYGEFFGHSLGHGIG--LEVHEGP---AISFR 308
Query: 521 N-VPIHASMTATDEPGYYEDGNFGIRLENVLVVTD 554
N P+ ++ T EPG Y +G FGIR+E +V+ +
Sbjct: 309 NDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVLKE 343
Score = 62.6 bits (153), Expect = 1e-10
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 13/139 (9%)
Query: 5 LAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMNEALL 64
L L+S + A ++ ++ + SGFTGS + LI+ N LL
Sbjct: 4 SERLIQLISEEG--IDAFLI-------MNIENSARASSVYFSGFTGSFSIILISENTRLL 54
Query: 65 WTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQRWER 124
TD RY +QA QE E + ++ D + N I ++ VS+ +R
Sbjct: 55 ITDSRYTVQAKQETDFEVREVKG-GDFIDVLKKTVNDLKIKTIALEEERVSLSLFRRISS 113
Query: 125 AFAKKQQKLVQTSTNLVDK 143
AF + K + + V +
Sbjct: 114 AFGDR--KFIGID-DEVKQ 129
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 155 bits (395), Expect = 2e-42
Identities = 85/392 (21%), Positives = 146/392 (37%), Gaps = 67/392 (17%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
EK+K++ E + ++I V ++ + ++T +A LYV +
Sbjct: 6 EKVKKIIEFMDKNSIDAVLIAKNPNVYYISGASPLA-------GGYILITGESATLYVPE 58
Query: 230 RKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALY 289
E +ES + V + + ++G + + +S Y
Sbjct: 59 L----EYEMAKEESNIPVEKFKKMD-----------EFYKALEGIKSLGIE-SSLPYGFI 102
Query: 290 SKLNSDKVLLQQSP----LALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIY 345
+L + + + + IK+ E+ ++KA I DK +
Sbjct: 103 EELKKKANIKEFKKVDDVIRDMRIIKSEKEIKIIEKA-----CEIA------DKAVMAAI 151
Query: 346 GASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIM 405
EG E V+ K+E + +F TI + G +A+
Sbjct: 152 E---EITEG-------------KKEREVAAKVE-YLMKMNGAEKPAFDTIIASGYRSALP 194
Query: 406 HYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIAL 465
H + ++ + + D GA YQ +DITRT G P+ +K Y VL+
Sbjct: 195 HGVA---SDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKKA 251
Query: 466 GNAVFPNGTCGHTLDILARLPLWKYGL-DY-RHGTGHGVGSYLNVHEGPQSISFKPRN-V 522
+ P G LD +AR + +YG +Y H GHGVG L VHE P +
Sbjct: 252 VESAKP-GITAKELDSIARNIIAEYGYGEYFNHSLGHGVG--LEVHEWP---RVSQYDET 305
Query: 523 PIHASMTATDEPGYYEDGNFGIRLENVLVVTD 554
+ M T EPG Y G+R+E+ +++T
Sbjct: 306 VLREGMVITIEPGIYIPKIGGVRIEDTILITK 337
Score = 52.2 bits (126), Expect = 2e-07
Identities = 20/146 (13%), Positives = 53/146 (36%), Gaps = 27/146 (18%)
Query: 1 MAEILAALRSLMSSHDPPLHALVV-PSEDYHQSEYVSARDKRREFVSGFTGSAG-LALIT 58
M E + + M + + A+++ + + ++SG + AG LIT
Sbjct: 4 MNEKVKKIIEFMDKNS--IDAVLIAKNPN-------------VYYISGASPLAGGYILIT 48
Query: 59 MNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDT 118
A L+ + A +E + + +++ L ++G++ +
Sbjct: 49 GESATLYVPELEYEMAKEESNIPVEKFKKMDEF------YKALEGIKSLGIES-SLPYGF 101
Query: 119 AQRWERAFAKKQQKLVQTSTNLVDKV 144
+ ++ K+ K V +++ +
Sbjct: 102 IEELKKKANIKEFKKV---DDVIRDM 124
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 152 bits (385), Expect = 7e-41
Identities = 90/389 (23%), Positives = 150/389 (38%), Gaps = 49/389 (12%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
+L G++IT ++ +L R + A + + + + +
Sbjct: 17 RRLAAAAAATEQAGLAGLVITPGYDLRYLIGSRADT---FERLTALVLPASGVPTIVLPR 73
Query: 230 RKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALY 289
+++S S + GV VRD+ L+ PA +D + A
Sbjct: 74 LELASLKESAASDLGVCVRDWVDGDDPYQLVAVALGGAPAATAVTDSMPAL----HLLPL 129
Query: 290 SKLNSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASG 349
+ +L L + +K E+D L KA A + D+ +
Sbjct: 130 ADALGVLPVLATDVLRQLRMVKEAAEVDALAKA-----GAAI------DRVHARVPA--- 175
Query: 350 YFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSP 409
+ + G TE V+ + E ++F + S GP+ A H+
Sbjct: 176 FLVPG-------------RTEAQVAADIA-EAIVAEGHSAVAFVIVGS-GPHGADPHHGY 220
Query: 410 QSETCAEMDPNSIYLCDSGAQYQDG-TTDITRTFHFGKPSAHEKACYTAVLKGHIALGNA 468
S+ ++ I + D G Y+ G +D TRT+ G PS Y+A+ + A +A
Sbjct: 221 -SDR--KLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDA 277
Query: 469 VFPNGTCGHTLDILARLPLWK--YGLDYRHGTGHGVGSYLNVHEGPQSISFKPRN-VPIH 525
V P G +D AR L + H TGHG+G L VHE P N +P+
Sbjct: 278 VRP-GVTAAQVDAAARDVLADAGLAEYFVHRTGHGIG--LCVHEEP---YIVAGNELPLV 331
Query: 526 ASMTATDEPGYYEDGNFGIRLENVLVVTD 554
A M + EPG Y G +G R+E+++VVT+
Sbjct: 332 AGMAFSIEPGIYFPGRWGARIEDIVVVTE 360
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 150 bits (382), Expect = 1e-40
Identities = 87/387 (22%), Positives = 142/387 (36%), Gaps = 51/387 (13%)
Query: 171 KLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKR 230
+L++ L G +I+ + +L +R +V + A+
Sbjct: 2 RLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHEVG--ERLAILAVSAEGDYRFLAPSL 59
Query: 231 KVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYS 290
D + + + + + D + AD
Sbjct: 60 ----YENVVNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRAD----WLIGIM 111
Query: 291 KLNSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGY 350
KL S + + IK+ E+ ++ A + I DK +EI +
Sbjct: 112 KLGKFTFQPLSSLIKELRMIKDKEEVKMMEHA-----SRIA------DKVFEEILT---W 157
Query: 351 FLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQ 410
L G + E ++ K+E +E G++F I + G NAA H+ P
Sbjct: 158 DLIG-------------MKERELALKIELL--IRELSDGIAFEPIVASGENAANPHHEP- 201
Query: 411 SETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVF 470
E ++ I + D GA+++ +DITRT G+ Y V + AV
Sbjct: 202 GER--KIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQESAFKAVR 259
Query: 471 PNGTCGHTLDILARLPLWKYGL-DY-RHGTGHGVGSYLNVHEGPQSISFKPRN-VPIHAS 527
G +D AR + K G +Y H TGHG+G L+VHE P P V +
Sbjct: 260 E-GIKAKDVDSRAREVISKAGYGEYFIHRTGHGLG--LDVHEEP---YIGPDGEVILKNG 313
Query: 528 MTATDEPGYYEDGNFGIRLENVLVVTD 554
MT T EPG Y G G+R+E+ +VV +
Sbjct: 314 MTFTIEPGIYVPGLGGVRIEDDIVVDE 340
Score = 30.7 bits (70), Expect = 1.4
Identities = 4/84 (4%), Positives = 17/84 (20%), Gaps = 21/84 (25%)
Query: 5 LAALRSLMSSHDPPLHALVV-PSEDYHQSEYVSARDKRREFVSGFTGSA-----GLALIT 58
L L+ ++ P + +++G + ++
Sbjct: 3 LEKFIHLLGERG--FDGALISPGTN-------------LYYLTGLRLHEVGERLAILAVS 47
Query: 59 MNEALLWTDGRYFLQATQELTGEW 82
+ + +
Sbjct: 48 AEGDYRFLAPSLYENVVNNFPATF 71
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 137 bits (346), Expect = 2e-35
Identities = 63/405 (15%), Positives = 111/405 (27%), Gaps = 67/405 (16%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPV-VHAFAIVTTNAAFLYVD 228
+ LR L E I T+ + + +D YC +VT +
Sbjct: 25 NRQARLRAHLAAENIDAAIFTSYHNINYY-----SDFLYCSFGRPYALVVTEDDVISISA 79
Query: 229 KRKVSSEVISFLKES-GVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYA 287
+ + + G + Y D Q P + I + + +
Sbjct: 80 NI----DGGQPWRRTVGTDNIVYTDWQRDNYFAAIQQALP-----KARRIGIEHDHLNLQ 130
Query: 288 LYSKLN---SDKVLLQQSPLALA-KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQE 343
KL D L+ + + + IK+ E ++ A I D
Sbjct: 131 NRDKLAARYPDAELVDVAAACMRMRMIKSAEEHVMIRHG-----ARIA------DIGGAA 179
Query: 344 IYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESF--RASKEHFRG---LSFPTISSV 398
+ EA + + E V+ RA + F + T
Sbjct: 180 VV---------EALGD----Q---VPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQS 223
Query: 399 GPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAV 458
G N H T +++ I + T + RT S +
Sbjct: 224 GINTDGAHNPV---TTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVN 280
Query: 459 LKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL-DY-RHGTGHGVGSYLNVHEGP--QS 514
++ H A + P C + K+ + Y G GH G H
Sbjct: 281 VEVHEAGLKLIKPGARCSD-IARELNEIFLKHDVLQYRTFGYGHSFG--TLSHYYGREAG 337
Query: 515 ISFKPRN-VPIHASMTATDEPGYYED----GNFGIRLENVLVVTD 554
+ + + M + EP G G R ++L+V +
Sbjct: 338 LELREDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHDILIVNE 382
Score = 45.8 bits (109), Expect = 3e-05
Identities = 19/149 (12%), Positives = 47/149 (31%), Gaps = 22/149 (14%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFT----GSAGLAL 56
A A LR+ +++ + + A + YH Y S F G +
Sbjct: 23 YANRQARLRAHLAAEN--IDAAIF--TSYHNINYYS----------DFLYCSFGRPYALV 68
Query: 57 ITMNEALLWTDGRYFLQATQELTGEWKLMRM-LEDPAVDVWMANNLPNDAAIGVDPWCVS 115
+T ++ + + Q + G ++ + + LP IG++ ++
Sbjct: 69 VTEDDVISISANIDGGQPWRRTVGTDNIVYTDWQRDNYFAAIQQALPKARRIGIEHDHLN 128
Query: 116 IDTAQRWERAFAKKQQKLVQTSTNLVDKV 144
+ + + + V ++
Sbjct: 129 LQNRDKLAARYPDAELVDV---AAACMRM 154
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 126 bits (318), Expect = 1e-31
Identities = 51/405 (12%), Positives = 101/405 (24%), Gaps = 68/405 (16%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFA-IVTTNAAFLYVD 228
+ LR + ++ T+ + + + YC +A ++ A
Sbjct: 26 RRZBRLRAWMAKSBIDAVLFTSYHNINYY-----SGWLYCYFGRKYAZVIBZVKAVTISK 80
Query: 229 KRKVSSEVISFLKES-GVEVRDYDAVSSDVVLLQSNQLNPPADVQG--SDLIWADPNSCS 285
+ + S G + D D +L A G D + B
Sbjct: 81 GI----DGGMPWRRSFGBNIVYTDW-KRDNFYSAVKKLVKGAKZIGIEHDHVTLB----H 131
Query: 286 YALYSKLNSDKVLLQQSPLALA-KAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEI 344
K + + + IK+ E B +++ A I D
Sbjct: 132 RRZLZKALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZG-----ARIS------DIGGAAT 180
Query: 345 YGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSV------ 398
A E V+ +Z R + +
Sbjct: 181 A---------AAISAGV-------PEYEVAIATT-BAMVRZIARBFPYVELMDTWIWFQS 223
Query: 399 GPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAV 458
G N H T ++ I + T + RT + +
Sbjct: 224 GINTDGAHNPV---TBRVVZRGDILSLNCFPMIFGYYTALERTLFLZZVBDASLZIWZKN 280
Query: 459 LKGHIALGNAVFPNGTCGHTLDILARLPLWKYGL--DYRHGTGHGVGSYLNVHEGP--QS 514
H + P C + ++ L G GH G + H
Sbjct: 281 TAVHRRGLZLIKPGARCKD-IASELNBMYRZWDLLRYRTFGYGHSFG--VLBHYYGREAG 337
Query: 515 ISFKPRN-VPIHASMTATDEPGYYED----GNFGIRLENVLVVTD 554
+ + + M + EP + G G R ++LV+ +
Sbjct: 338 VELREDIZTVLEPGMVVSMEPMVMBPEGEPGAGGYREHDILVIKE 382
Score = 48.1 bits (115), Expect = 6e-06
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 10/126 (7%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMN 60
M LR+ M+ B + A++ YH Y S ++ + G +I
Sbjct: 24 MTRRZBRLRAWMAKSB--IDAVLF--TSYHNINYYSG------WLYCYFGRKYAZVIBZV 73
Query: 61 EALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQ 120
+A+ + G + G+ + + + + IG++ V++B +
Sbjct: 74 KAVTISKGIDGGMPWRRSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLBHRR 133
Query: 121 RWERAF 126
Z+A
Sbjct: 134 ZLZKAL 139
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 119 bits (300), Expect = 5e-29
Identities = 33/267 (12%), Positives = 73/267 (27%), Gaps = 23/267 (8%)
Query: 302 SPLALAKAIKNPVELDGLKKA-HIRDGA--AIVQYIIWLDKQMQEIYGASGYFLEGEATK 358
L+ +K+ E L + D + ++ + +I + L +
Sbjct: 169 LGLSKVWEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKI---TNAKLSDKIEN 225
Query: 359 EKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVGPNAAIM-HYSPQSETCAEM 417
+ +K +S ++ I G + ++
Sbjct: 226 KIDDVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGN 285
Query: 418 DPNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGH 477
L G +Y + ++ITRTF PS Y +L + + G
Sbjct: 286 G---CILASCGIRYNNYCSNITRTFLID-PSEEMANNYDFLLTLQKEIVTNILKPGRTPK 341
Query: 478 TLDILARLPLWKYGLDYR----HGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDE 533
+ + K + G +G L + ++ K I
Sbjct: 342 EVYESVIEYIEKTKPELVPNFTKNIGSLIG--LEFRDSNFILNVKNDYRKIQRGDCFNIS 399
Query: 534 PGYYE------DGNFGIRLENVLVVTD 554
G+ N+ ++L + + +
Sbjct: 400 FGFNNLKDSQSANNYALQLADTVQIPL 426
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 113 bits (283), Expect = 6e-27
Identities = 54/427 (12%), Positives = 123/427 (28%), Gaps = 62/427 (14%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPY------------CPVVHAFAI 217
++L L NE+ + D + PY +
Sbjct: 15 KRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALHTWLLGYEFPSTLIL 74
Query: 218 VTTNAAFLYVDKRK--------------VSSEVISFLKESGVEVRDYDAVSSDVVLLQSN 263
+ + + K ++ K++ + ++ + +
Sbjct: 75 LEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKK 134
Query: 264 QLNPPADVQGSDLIWADPNSCSYALYSKLNSDKVLLQQSP-LALAKAIKNPVELDGLKKA 322
P D I + +++ + S+ L+ S LA AIK+ EL +K A
Sbjct: 135 VGVFPKDKTQGKFI-----NEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGA 189
Query: 323 -HIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFR 381
+ + ++ + + + + + T S KL
Sbjct: 190 SRVSVAV----MSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDID 245
Query: 382 ASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRT 441
+ + I G + + + + D + LC G +Y+ +++ RT
Sbjct: 246 LDQL---EWCYTPIIQSGGSYDLKPSAITDDRNLHGD---VVLCSLGFRYKSYCSNVGRT 299
Query: 442 FHFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCGHTLDILARLPLWKYGLDYR----HG 497
+ F P + ++ Y+ ++ L G + + D
Sbjct: 300 YLFD-PDSEQQKNYSFLVALQKKLFEYCRD-GAVIGDIYTKILGLIRAKRPDLEPNFVRN 357
Query: 498 TGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGY----------YEDGNFGIRLE 547
G G+G + E ++ K + A MT G+ + + + L
Sbjct: 358 LGAGIG--IEFRESSLLVNAK-NPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEYALLLI 414
Query: 548 NVLVVTD 554
+ + +T
Sbjct: 415 DTIQITR 421
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 109 bits (273), Expect = 2e-25
Identities = 55/404 (13%), Positives = 119/404 (29%), Gaps = 52/404 (12%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
+ + L + + G+++ + + + + ++ + + D
Sbjct: 81 FRHRRLTDHVVARGYAGLLMFDPLNIRYATDSTNMQLWNTHNPFRATLLCADGYMVMWDY 140
Query: 230 RKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLI--------WADP 281
+ +S +S E R + + + + L+
Sbjct: 141 K--NSPFLSEFNPLVREQRAGADLFYFDRGDKVDVAADVFANEVRILLRDHAPGLRRLAV 198
Query: 282 NSCSYALYSKLNSD--KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDK 339
+ L + +++ + A+++K P E+ ++ A +
Sbjct: 199 DKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCA-----------SHACEV 247
Query: 340 QMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSFPTISSVG 399
++++ + + K G E + L S + + G
Sbjct: 248 AVRKME---------DFARSKVGDGVT--CENDIWAILHSEN--VRRGGEWIETRLLASG 294
Query: 400 PNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGT-TDITRTFHFGKPSAHEKACYTAV 458
P + C N I D+ G TDI+R++ G Y
Sbjct: 295 PRSNPWFQECGPRVCQ---RNEIISFDTDLVGAYGICTDISRSWWIGDQKPRADMIYAMQ 351
Query: 459 LKG-HIALGNAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISF 517
HI + G L + K+ HGVG E P +++
Sbjct: 352 HGVEHIRTNMEMLKPGVMIPELSANTHVLDAKFQKQKYGCLMHGVGL---CDEWP-LVAY 407
Query: 518 KPRNV------PIHASMTATDEPG-YYEDGNFGIRLENVLVVTD 554
V P+ MT E E G+F I+LE+ +++T+
Sbjct: 408 PDHAVAGAYDYPLEPGMTLCVEALISEEGGDFSIKLEDQVLITE 451
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 98.2 bits (245), Expect = 2e-24
Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMN 60
+ AL + +++ + A++V ++SGFTGS +I +
Sbjct: 10 FLQRRRALSAQLAAKR--IDAMLVTH------------LTHIRYLSGFTGSNAALIINKD 55
Query: 61 E-ALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTA 119
A + TDGRY Q +++ + L + +++ +G + +S+
Sbjct: 56 LSARISTDGRYITQIAEQVPD----IESLMARNCAPALLSDINGPKRVGFEADYLSVSQC 111
Query: 120 QRWERAFAKKQQKLVQTSTNLVDK 143
+ ++ + L+ + ++K
Sbjct: 112 EELRKSAGSDVE-LIPVT-GAIEK 133
Score = 35.0 bits (81), Expect = 0.022
Identities = 17/127 (13%), Positives = 49/127 (38%), Gaps = 28/127 (22%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTN-AAFLYVD 228
++ + L +L ++ +++T L + +L G++ A I+ + +A + D
Sbjct: 12 QRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSN--------AALIINKDLSARISTD 63
Query: 229 KR---KVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCS 285
R +++ +V +E + ++ +D+ G + + + S
Sbjct: 64 GRYITQIAEQV------PDIESLMARNCAPALL----------SDINGPKRVGFEADYLS 107
Query: 286 YALYSKL 292
+ +L
Sbjct: 108 VSQCEEL 114
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 90.9 bits (226), Expect = 7e-22
Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 22/144 (15%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMN 60
+ + L M+ L AL+V +++GF+G+A LIT
Sbjct: 8 LEQRLGHCLRQMAEKG--LEALLVTH------------LTNSYYLTGFSGTAATVLITAK 53
Query: 61 EALLWTDGRYFLQATQELTG-EWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTA 119
+L TD RY L A + G + R ++ A+ + +G + VS
Sbjct: 54 RRVLITDSRYTLLAKASVEGFDIIESRTPLKVVAELLEADQI---DCLGFEDQ-VSFSFY 109
Query: 120 QRWERAFAKKQQKLVQTSTNLVDK 143
Q + + L+ S V+
Sbjct: 110 QAMQAELSGIT--LLAQS-GFVEH 130
Score = 39.3 bits (92), Expect = 6e-04
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
++L ++ + +++T L +L GT A ++T L D
Sbjct: 10 QRLGHCLRQMAEKGLEALLVTHLTNSYYLTGFSGTA--------ATVLITAKRRVLITDS 61
Query: 230 R 230
R
Sbjct: 62 R 62
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 95.8 bits (239), Expect = 3e-21
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 24/181 (13%)
Query: 388 RGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GK 446
+ +F TI + G NA ++HY D + L D GAQ DI+ TF G
Sbjct: 221 KHHAFNTILASGKNATVLHYEDNDAQIQNGD---LVLLDLGAQKDYYNADISYTFPANGT 277
Query: 447 PSAHEKACYTAVLKGHIALGNAVFPNGTCG--HTL------DILARLPLWKYGLDYR--- 495
S+ +K Y VL + P + + + L + +
Sbjct: 278 FSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYY 337
Query: 496 -HGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPG-YYEDGNFGIRLENVLVVT 553
HG H +G L+ H+ ++ + M T EPG Y E+ + GIR+E+ ++VT
Sbjct: 338 YHGVSHFLG--LDTHDVGTY-----KDRVLEEGMVITIEPGLYIEEESIGIRIEDDILVT 390
Query: 554 D 554
Sbjct: 391 K 391
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 81.6 bits (202), Expect = 1e-18
Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 20/143 (13%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMN 60
M L + + L AL+V +++ F G+ IT N
Sbjct: 4 MQRRLERFDAKLVQSG--LDALLVTG------------QNNIYYLTDFWGTNATVFITKN 49
Query: 61 EALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQ 120
L TD RY L A Q + G + + ++ + IG D VS Q
Sbjct: 50 RRLFLTDSRYTLIAKQSVHGFDIIESKDPLKDIVKFVEVD--KLETIGFDNQ-VSFAYYQ 106
Query: 121 RWERAFAKKQQKLVQTSTNLVDK 143
+ F L + N +++
Sbjct: 107 ALQAIFEGY--TLSPQT-NFMEE 126
Score = 39.3 bits (92), Expect = 7e-04
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
+L+ KL +++T + + +L + GT+ A +T N D
Sbjct: 6 RRLERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTN--------ATVFITKNRRLFLTDS 57
Query: 230 R 230
R
Sbjct: 58 R 58
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 84.2 bits (209), Expect = 2e-17
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 36/196 (18%)
Query: 388 RGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHF-GK 446
R S+ TI G N I+HY+ E EM + L D+G +Y+ DITRTF GK
Sbjct: 225 RYPSYNTIVGSGENGCILHYT---ENECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGK 281
Query: 447 PSAHEKACYTAVLKGHIALGNAVFP-------NGTCGHTL-DILARLPLWKYGLD----- 493
+ ++ Y VL+ P G + L +L + K +D
Sbjct: 282 FTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQ 341
Query: 494 ------YRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHASMTATDEPGYY--EDG----- 540
+ HG H +G L+VH+ + R+ + M T PG Y D
Sbjct: 342 NAHRPFFMHGLSHWLG--LDVHDVGV--YGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQ 397
Query: 541 --NFGIRLENVLVVTD 554
GIR+E+ +V+T+
Sbjct: 398 YRGIGIRIEDDIVITE 413
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 77.9 bits (192), Expect = 3e-15
Identities = 61/264 (23%), Positives = 96/264 (36%), Gaps = 72/264 (27%)
Query: 377 LESFRASKEHFRGLSFPTISSVGPNAAIMHYS-PQSETCAEMDPNSIYLCDSGAQYQDGT 435
E + S+ R S+ I G N+A++HY + + + L D G +Y
Sbjct: 227 FEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFA 286
Query: 436 TDITRTFHF-GKPSAHEKACYTAVLKGHIALGNAVFPNGT--------CGHTLDILARLP 486
+DIT +F GK +A +KA Y AVL+ A+ A+ P L+ LA +
Sbjct: 287 SDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMG 346
Query: 487 LWKYGLD-----------YRHGTGHGVGSYLNVH-------EGPQSISFKPRNV----PI 524
+ +D HG GH +G ++VH + R++ +
Sbjct: 347 ILSGSVDAMVQAHLGAVFMPHGLGHFLG--IDVHDVGGYPEGVERIDEPGLRSLRTARHL 404
Query: 525 HASMTATDEPGYY--------------------ED------GNFGIRLENVLVVTDANTK 558
M T EPG Y + G G+R+E +VVT
Sbjct: 405 QPGMVLTVEPGIYFIDHLLDEALADPARASFFNREVLQRFRGFGGVRIEEDVVVT----- 459
Query: 559 FNFGDKGYLSFEHITWAPYQIKMI 582
D G E +T P ++ I
Sbjct: 460 ----DSGI---ELLTCVPRTVEEI 476
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 75.2 bits (185), Expect = 2e-14
Identities = 47/231 (20%), Positives = 78/231 (33%), Gaps = 61/231 (26%)
Query: 381 RASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITR 440
A++ + I ++ N AI+HY+ + +L D+GA + DITR
Sbjct: 201 LATQHSENDNPYGNIVALNENCAILHYTHFD--RVAPATHRSFLIDAGANFNGYAADITR 258
Query: 441 TFHF-GKPSAHEKACYTAVLKGHIALGNAVFP--------NGTCGHTLDILARLPLWKYG 491
T+ F G+ + + IAL N + P L+ +
Sbjct: 259 TYDFTGEGEF--AELVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLS 316
Query: 492 LD-----------YRHGTGH--G-----VGSYLNVHEG-----PQSISFKPRNVPIHASM 528
D + HG GH G VG ++ +G P+ F I A+
Sbjct: 317 ADEIVAKGITSTFFPHGLGHHIGLQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQ 376
Query: 529 TATDEPGYY------------EDGNF-------------GIRLENVLVVTD 554
T EPG Y ++ GIR+E+ ++V +
Sbjct: 377 VFTIEPGLYFIDSLLGDLAATDNNQHINWDKVAELKPFGGIRIEDNIIVHE 427
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 73.5 bits (181), Expect = 6e-14
Identities = 49/234 (20%), Positives = 79/234 (33%), Gaps = 64/234 (27%)
Query: 381 RASKEHFRGLSFPTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITR 440
AS++ + + +I ++ +A+I+HY + +L D+GA Y DITR
Sbjct: 201 AASRQGDNDVPYTSIVALNEHASILHYMQCDT--VAPKESRSFLIDAGANYHGYAADITR 258
Query: 441 TF----HFGKPSAHEKACYTAVLKGHIALGNAVFPNGTCG--HTL------DILARLPLW 488
T+ SA + AV K + L +++ P H L IL +
Sbjct: 259 TYAQEGVH--NSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMV 316
Query: 489 KYGLD-----------YRHGTGH--G-----VGSYLNVHEG-PQSISFKPRNV----PIH 525
+ HG GH G VG +N G P+ + +
Sbjct: 317 NLTPPEIVEMGITRTFFPHGIGHFLGLQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVE 376
Query: 526 ASMTATDEPGYY------------EDGNF-------------GIRLENVLVVTD 554
A T EPG Y + GIR+E+ ++V
Sbjct: 377 ARQVFTIEPGLYFIDSLLRDLKATPASKYINWDTIDAYKPFGGIRIEDNIIVHR 430
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 3e-10
Identities = 70/493 (14%), Positives = 140/493 (28%), Gaps = 164/493 (33%)
Query: 3 EILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMNEA 62
+L L+ L+ DP + S + S + + R L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRL---------LKSKPYENC 246
Query: 63 LLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQRW 122
LL +V +
Sbjct: 247 LLVLL--------------------------NVQ-------------NAKAW-------- 259
Query: 123 ERAFAKKQQKLVQT-STNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTN 181
AF + L+ T + D + T ++ L LT
Sbjct: 260 -NAFNLSCKILLTTRFKQVTDFL----SAATTTHIS--------------LDHHSMTLTP 300
Query: 182 EKARGIIITTLDEVAWLYNIRGTDVPY--CPVVHAFAI----------VTTNAAFLYVDK 229
++ + +++ +L + R D+P + + + T + +V+
Sbjct: 301 DEVKSLLLK------YL-DCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 230 RKVSSEVISFLKE-SGVEVRD-YDAVSSDVVLLQSNQLNPPADVQGSDLIWAD-PNSCSY 286
K+++ + S L E R +D + + + + P + LIW D S
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPS-AHIPTILLS--LIWFDVIKSDVM 405
Query: 287 ALYSKLNSDKVLLQQSPLALAKAI-----KNPVELDGLKKAHIRDGAAIVQYII------ 335
+ +KL+ L+++ P +I + V+L+ H + Y I
Sbjct: 406 VVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---IVDHYNIPKTFDS 461
Query: 336 ------WLDKQMQEIYGASGYFLEGEATKEK------------------KHSGTVKLTEV 371
+LD Q Y G+ L+ E+ +H T
Sbjct: 462 DDLIPPYLD---QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 372 TVSDKLESFRASKEHFRGLSFPTISSVGPNAAIMHYSPQSE--------TC----AEMDP 419
++ + L+ + K + + P + AI+ + P+ E T A M
Sbjct: 519 SILNTLQQLKFYKPYIC-DNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 420 NSIYLCDSGAQYQ 432
+ ++ Q Q
Sbjct: 576 DEAIFEEAHKQVQ 588
Score = 55.6 bits (133), Expect = 4e-08
Identities = 102/704 (14%), Positives = 184/704 (26%), Gaps = 248/704 (35%)
Query: 3 EILAALRSLMSSHDPPLHALVVPSEDYHQSEYV--SARDKRREFVSGFTGSA-------- 52
++ +S++S + H ++ + + + K+ E V F
Sbjct: 37 DVQDMPKSILSKEEID-HIIMSKDAV-SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 53 -----------GLALITMNEAL--LWTDGR----YFLQATQELTGEWKLMRMLE--DPAV 93
+ E L+ D + Y + Q KL + L PA
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQALLELRPAK 151
Query: 94 DV-----------WMANNLPNDAAIGVDP-----WCVSIDTAQRWERAFAKKQQKLVQTS 137
+V W+A ++ + W +++ + QKL+
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNS-PETVLEMLQKLL--- 206
Query: 138 TNLVDKVWKNRP-PVETYPVTVQQIEFAGSSVVEKLKELREKLTNEK-ARGIIITTLDEV 195
+D W +R + + I+ ELR L ++ +++ L V
Sbjct: 207 -YQIDPNWTSRSDHSSNIKLRIHSIQ----------AELRRLLKSKPYENCLLV--LLNV 253
Query: 196 AWLYNIRGTDVPYCPVVHAFAI-----VTT----NAAFLYVDKRKVSSEVISFLKESGVE 246
N + +AF + +TT FL S +
Sbjct: 254 -Q--NAK--------AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD---HHSMTLT 299
Query: 247 VRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYSKLNSDKVLLQQSPLAL 306
+ ++ + + L P + + P L
Sbjct: 300 PDEVKSLLLKYLDCRPQDL-PREVLTTN----------------------------PRRL 330
Query: 307 AKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTV 366
+ + IRDG A W KH
Sbjct: 331 S-----------IIAESIRDGLATWDN--W------------------------KHVNCD 353
Query: 367 KLTEVTVSDKLESFRAS--KEHFRGLS-FPTISSVGPNAAI------MHYSPQSETCAEM 417
KLT + L + ++ F LS FP P+A I + + ++ +
Sbjct: 354 KLTT-IIESSLNVLEPAEYRKMFDRLSVFP------PSAHIPTILLSLIWFDVIKSDVMV 406
Query: 418 DPNSIYLCDSGA---QYQDGTT---DITRTFHF---GKPSAHEK--ACYTAVLKGHIALG 466
N L Q ++ T I + + H Y
Sbjct: 407 VVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN---------- 454
Query: 467 NAVFPNGTCGHTLDILARLPLWKYGLDYRHGTGHGVGSYLNVHEGPQSISFKPRNVPIHA 526
P L +P + Y H +G +L E P+ ++
Sbjct: 455 ---IPKTFDSDDL-----IPPYLDQYFYSH-----IGHHLKNIEHPERMTLFRM------ 495
Query: 527 SMTATDEPGYYEDGNF---GIRLENVLVVTDANTKFNFGD-KGYLSFEHIT-WAPYQIKM 581
+ D F IR ++ + K Y +I P ++
Sbjct: 496 ---------VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--PYICDNDPKYERL 544
Query: 582 IN--LKSL-TPEEIDWLNAYHSKCRDIL--------APYLDEAE 614
+N L L EE N SK D+L +EA
Sbjct: 545 VNAILDFLPKIEE----NLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 51.4 bits (122), Expect = 7e-07
Identities = 79/547 (14%), Positives = 150/547 (27%), Gaps = 182/547 (33%)
Query: 174 ELREKLTNEKARGII-----ITTLDEVAWLYNIRGTDVPYCPVVHAF--AIVTTNAAFLY 226
+ L+ E+ II ++ + W + ++ V F ++ N FL
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEVLRINYKFLM 95
Query: 227 VDKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSY 286
K S + +E RD L NQ+ +V
Sbjct: 96 -SPIKTEQRQPSMMTRMYIEQRD--------RLYNDNQVFAKYNVSRLQPYLKLRQ---- 142
Query: 287 ALYSKLNSDKVLLQ------QSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLD-- 338
AL + VL+ ++ +AL V L + + I WL+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALD------VCLSYKVQCKMDFK------IFWLNLK 190
Query: 339 ---------KQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRG 389
+ +Q++ Y ++ T HS +KL ++ +L SK +
Sbjct: 191 NCNSPETVLEMLQKLL----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 390 L-------------SF------------PTISSVGPNAAIMHYS----------PQSET- 413
L +F ++ A H S + ++
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 414 ---CAEMD------------PNSIYLCDSGAQYQDGTTDITRTFHFGKPSAHE--KACY- 455
+ P + + +DG H ++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 456 ---TAVLKGH-IALGNAVFPNGTCGH-TLDILARLPLW----------------KYGLDY 494
A + L +VFP H +L+ +W KY L
Sbjct: 365 VLEPAEYRKMFDRL--SVFPPSA--HIPTILLSL--IWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 495 RHGTGHGVGSYLNVHEGPQSISFKPRNVP-IHASMTATDEPGYYEDGNFGIRLENVLVVT 553
+ S +++ + K N +H S+ +Y N+
Sbjct: 419 K----QPKESTISIPSIYLELKVKLENEYALHRSIVD-----HY----------NIPKTF 459
Query: 554 DANTKFNFGDKGYLSFEHITWAPYQIKMINLKSLTPEEIDWLNAYHSKCRDILAPYLDEA 613
D++ Y + HI + +K I PE + R + +LD
Sbjct: 460 DSDDLIPPYLDQYF-YSHI---GHHLKNIEH----PERMTLF-------RMV---FLD-- 499
Query: 614 ELAWLKK 620
+L++
Sbjct: 500 -FRFLEQ 505
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 4e-07
Identities = 95/665 (14%), Positives = 184/665 (27%), Gaps = 230/665 (34%)
Query: 6 AALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGF-TGSAGLAL----ITMN 60
+ R L SH H L+VP+ + + A + +F + G A T
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPT-----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 61 EALLWTDGRY--FL-----QATQELTGEWKLMRMLEDPAVDVWMANN--------LPNDA 105
E L G++ ++ + + ++ + + ++ N L +
Sbjct: 59 E--LV--GKFLGYVSSLVEPSKVGQFDQ--VLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 106 AIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTN-----LVDKVWKNRPPVETYPVTVQQ 160
++ + + + + + L V + +
Sbjct: 113 DT-------TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAI---- 159
Query: 161 IEFAGSSVVEK-LKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVT 219
F G + +ELR+ LY Y +V I
Sbjct: 160 --FGGQGNTDDYFEELRD--------------------LYQT------YHVLVGDL-I-- 188
Query: 220 TNAAFLYVDKRKVSSEVISFLKESGVEVRDYDAVSSDVV-LLQSNQLNPPADVQGSDLIW 278
K S+E +S L + ++ +++ L++ P D L+
Sbjct: 189 -----------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLS 233
Query: 279 ADPNSCSYALYSKLNSDKVLLQQSPLA----LAKAI-KNPVELDGLKKAHIRDGAAIV-- 331
P SC L ++Q LA AK + P EL K +V
Sbjct: 234 I-PISC------PLI---GVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 332 --------------------QYIIWLDKQMQEIYGASGYFLEGEATKEKKHSG------- 364
+ ++ + E Y + L ++ +
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS--LPPSILEDSLENNEGVPSPM 338
Query: 365 -TVK-LTEVTVSDKLESFRASKEHFRGLSFPTISSV-GPNAAIMHYSPQS---------- 411
++ LT+ V D + + + + IS V G ++ PQS
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVE---ISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 412 -ETCAEMDPNSI------------YLCDSGAQYQDGTTDITRTFHFGKPSAH-EKACYTA 457
+ + +D + I +L + FH S A +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFL------------PVASPFH----SHLLVPA--SD 437
Query: 458 VLKGHIALGNAVFPNGTCG----HTLDILARLPLWKYGLDYRHGTGHGVGS------YLN 507
++ + N F T D G D R +G L
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFD----------GSDLRVLSGSISERIVDCIIRLP 487
Query: 508 VH-----EGPQS--ISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVT-DANTKF 559
V + + + F P +T ++ G G+R+ ++ T D N
Sbjct: 488 VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT------GVRV--IVAGTLDINPDD 539
Query: 560 NFGDK 564
++G K
Sbjct: 540 DYGFK 544
Score = 44.3 bits (104), Expect = 1e-04
Identities = 38/303 (12%), Positives = 83/303 (27%), Gaps = 130/303 (42%)
Query: 173 KELREKLTNEKARGIIITTLDEV-AWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRK 231
+L + T++ A+ + + + G + IV N L +
Sbjct: 1633 MDLYK--TSKAAQDV----WNRADNHFKDTYGFSIL--------DIVINNPVNLTI---- 1674
Query: 232 VSSEVISFLKESGVEVRD-YDAVSSDVVL---LQSNQLNPPADVQGSDLIWADPNS---- 283
F E G +R+ Y A+ + ++ L++ ++ + + +
Sbjct: 1675 ------HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 284 ----------CSYALYSKLNSDKVLLQQSPLA------------LAKAIKNPVELDGLKK 321
A + L S ++ + A LA + +E ++
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM--SIE-SLVEV 1785
Query: 322 AHIRDG-------------------AAI-------------VQYIIWLDKQMQEIYGASG 349
R G AI +QY++ + + +G
Sbjct: 1786 VFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV------ERVGKRTG 1838
Query: 350 YFLE--------------GE------------ATKEKKHSGTVKLTEVTVSDKLESFRAS 383
+ +E G+ K +K + + E+ S LE
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK----IDIIELQKSLSLEEV--- 1891
Query: 384 KEH 386
+ H
Sbjct: 1892 EGH 1894
Score = 40.0 bits (93), Expect = 0.002
Identities = 55/306 (17%), Positives = 94/306 (30%), Gaps = 107/306 (34%)
Query: 335 IW--LDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEHFRGLSF 392
+W D ++ YG S + T+ E + +E++ + F
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNL-----------TIHFGGEKGKRIRENYSAMIF 1693
Query: 393 PTISSVGPNAAIMHYSPQSETCAEMDPNSIYLCDSGAQYQDGTTDITRTFHFGKPS--AH 450
TI + E++ +S + G T+ F +P+
Sbjct: 1694 ETIVD--------GKLKTEKIFKEINEHSTSYTFRS---EKGLLSATQ---FTQPALTLM 1739
Query: 451 EKACYTAVLK--GHIALGNAVFPNGTCGHTL----------DIL-----ARLPLWKYGLD 493
EKA + LK G I +A F GH+L D++ + +
Sbjct: 1740 EKAAF-EDLKSKGLIP-ADATF----AGHSLGEYAALASLADVMSIESLVEV------VF 1787
Query: 494 YRHGTGHGVGSYLN--VHEGPQSISFKPRNVPIHASMTATDEPGYYEDGNFGIRLENVL- 550
YR G + V S + M A + PG L+ V+
Sbjct: 1788 YR-------GMTMQVAVPRDELGRS--------NYGMIAIN-PGRVAASFSQEALQYVVE 1831
Query: 551 --------VVTDANTKFNF--------GDK-------GYLSFEHITWAPYQIKMINLK-S 586
+V N +N GD L+F + +I +I L+ S
Sbjct: 1832 RVGKRTGWLVEIVN--YNVENQQYVAAGDLRALDTVTNVLNFIKLQ----KIDIIELQKS 1885
Query: 587 LTPEEI 592
L+ EE+
Sbjct: 1886 LSLEEV 1891
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; 2.00A {Streptococcus pneumoniae}
Length = 138
Score = 32.7 bits (75), Expect = 0.12
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 166 SSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPV-VHAFAIVTTN-AA 223
S+ + KL+++ L +EK +++ + +L T P F V +
Sbjct: 1 SNAMSKLQQILTYLESEKLDVAVVSDPVTINYL-----TGFYSDPHERQMFLFVLADQEP 55
Query: 224 FLYVDKRKVSSEVISFLKESGVEVRDYD 251
L+V EV V Y
Sbjct: 56 LLFVPAL----EVERASSTVSFPVVGYV 79
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae}
PDB: 3peb_A*
Length = 132
Score = 29.3 bits (66), Expect = 1.8
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCP-VVHAFAIVTTN-AAFLYV 227
KL +R L + +A + + V +L T P F V + L+V
Sbjct: 3 SKLNRIRHHLHSVQAELAVFSDPVTVNYL-----TGFFCDPHERQMFLFVYEDRDPILFV 57
Query: 228 DKRKVSSEVISFLKESGVEVRDYD 251
EV + V Y
Sbjct: 58 PAL----EVSRAKQSVPFPVFGYI 77
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2
d.41.2.2
Length = 441
Score = 30.1 bits (68), Expect = 2.3
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 559 FNFGDKGYLSFEHITWAPYQIKMINLKSLTPEEIDWLNAYHSKCRDILAPYLDEAELAWL 618
N + + E I W Q + T EEI++L + PYL A + ++
Sbjct: 49 TNRSSQLTFNKEAINWLKEQFSYLGNLRFTEEEIEYL---KQEI-----PYLPSAYIKYI 100
Query: 619 K 619
Sbjct: 101 S 101
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G
midwest center for structural genomics; 1.85A
{Streptococcus pyogenes m1 gas}
Length = 132
Score = 28.2 bits (63), Expect = 3.6
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCP--VVHAFAIVTTNAAFLYV 227
KL ++R L + A I + + +L T P + A L+V
Sbjct: 3 AKLDQIRLYLDQKGAELAIFSDPVTINYL-----TGFFCDPHERQLFLFVYHDLAPVLFV 57
Query: 228 DKRKVSSEVISFLKESGVEVRDYD 251
EV + V Y
Sbjct: 58 PAL----EVARASQAISFPVFGYV 77
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 29.4 bits (66), Expect = 4.2
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 503 GSYLNVHEGPQSISFK------PRNVPIHASMTATDEPGYYEDGNFGIRLENVLVVTDAN 556
S + + + + ++ K PR +++T P +D N + +V
Sbjct: 237 DSAIFMEDTEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPG 296
Query: 557 TKFNFGDKGYLSFEHI 572
Y ++E +
Sbjct: 297 AAATIDGTTYATYEDL 312
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 4.3
Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 32/117 (27%)
Query: 518 KPRNVPIHASM----TATD-------EPGYYEDGNFGIRLENVLVVTDANTKFNFGDKGY 566
VPI+ + TATD PG G E+ V A+ N +
Sbjct: 1195 LKMGVPIYGIVAMAATATDKIGRSVPAPG---KGILTTAREHHSSVKYASPNLNMKYRK- 1250
Query: 567 LSFEHITWAPYQIKMINLKSLTPEEIDWLNAYH--SKCRDILAPYLDEAELAWLKKA 621
+ +K E++ L P D+ E +
Sbjct: 1251 --------RQLVTREAQIKDWVENELEALKL-EAEE------IPSEDQNEFLLERTR 1292
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 28.6 bits (64), Expect = 6.4
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 554 DANTKFNFG--DKGYLSFEHITWAPYQIKMINLKSLTPEEIDWLNAYHSKCRDILAPYLD 611
A +F F ++ + E +I+ + SLT +E ++L + PYL
Sbjct: 27 RAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTRDEKEFL---QREL-----PYLP 78
Query: 612 EAELAWLK 619
+ +L
Sbjct: 79 PIYIDFLD 86
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 28.0 bits (62), Expect = 8.4
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 17 PPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGS 51
PLH +VV ++ H E E + F +
Sbjct: 229 KPLHVMVVLAKTLHFME--------FECLREFADA 255
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 28.3 bits (63), Expect = 9.1
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 578 QIKMINLKSLTPEEIDWLNAYHSKCRDILAPYLDEAELAWLKK 620
Q+ L+ +E WL + + L+WL
Sbjct: 79 QLDHARTLRLSKKENIWL---AGNTFYGRSQIFEPEFLSWLSS 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,875,379
Number of extensions: 606071
Number of successful extensions: 1665
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1573
Number of HSP's successfully gapped: 53
Length of query: 627
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 528
Effective length of database: 3,937,614
Effective search space: 2079060192
Effective search space used: 2079060192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)