Query 006891
Match_columns 627
No_of_seqs 494 out of 4306
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 15:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0042 Glycerol-3-phosphate d 100.0 3.9E-98 8E-103 754.7 42.1 542 51-614 50-646 (680)
2 PLN02464 glycerol-3-phosphate 100.0 1.2E-88 2.7E-93 752.9 63.0 573 49-627 49-627 (627)
3 COG0578 GlpA Glycerol-3-phosph 100.0 3.4E-82 7.4E-87 663.8 52.6 513 69-613 10-530 (532)
4 PRK11101 glpA sn-glycerol-3-ph 100.0 7E-69 1.5E-73 589.6 55.5 488 69-607 4-500 (546)
5 PRK12266 glpD glycerol-3-phosp 100.0 3.4E-68 7.3E-73 579.9 53.5 491 70-596 5-504 (508)
6 PRK13369 glycerol-3-phosphate 100.0 6.6E-67 1.4E-71 570.6 51.6 473 69-576 4-486 (502)
7 TIGR03377 glycerol3P_GlpA glyc 100.0 3.6E-64 7.8E-69 551.9 51.4 473 87-607 1-478 (516)
8 PRK11728 hydroxyglutarate oxid 100.0 2.5E-33 5.5E-38 298.4 35.1 347 71-451 2-393 (393)
9 COG0579 Predicted dehydrogenas 100.0 2E-32 4.3E-37 283.3 30.8 358 70-454 2-375 (429)
10 PF01266 DAO: FAD dependent ox 100.0 2.9E-32 6.3E-37 286.8 27.7 340 73-450 1-358 (358)
11 TIGR01373 soxB sarcosine oxida 100.0 1.4E-30 2.9E-35 279.1 36.3 343 69-454 28-385 (407)
12 PRK12409 D-amino acid dehydrog 100.0 2E-30 4.4E-35 278.0 34.6 354 72-454 2-406 (410)
13 PRK00711 D-amino acid dehydrog 100.0 1.1E-29 2.3E-34 273.2 34.2 348 73-454 2-402 (416)
14 PRK11259 solA N-methyltryptoph 100.0 1E-28 2.2E-33 262.0 35.4 340 70-454 2-360 (376)
15 TIGR03364 HpnW_proposed FAD de 100.0 3.2E-28 6.9E-33 257.0 30.5 330 72-446 1-365 (365)
16 PRK01747 mnmC bifunctional tRN 100.0 1.9E-28 4.1E-33 276.8 30.5 334 71-454 260-633 (662)
17 TIGR01377 soxA_mon sarcosine o 100.0 1.9E-27 4.2E-32 252.6 35.2 339 72-454 1-360 (380)
18 TIGR03329 Phn_aa_oxid putative 100.0 1.9E-27 4E-32 257.9 34.7 347 69-454 22-394 (460)
19 TIGR01320 mal_quin_oxido malat 100.0 5.2E-27 1.1E-31 253.4 31.1 370 72-452 1-443 (483)
20 COG0665 DadA Glycine/D-amino a 100.0 1.5E-26 3.2E-31 246.4 31.9 351 69-454 2-367 (387)
21 KOG2665 Predicted FAD-dependen 100.0 2.7E-28 5.9E-33 232.7 15.7 356 69-452 46-452 (453)
22 TIGR02352 thiamin_ThiO glycine 100.0 2.3E-26 4.9E-31 240.3 28.7 319 88-453 1-335 (337)
23 PRK13339 malate:quinone oxidor 100.0 1.8E-25 3.9E-30 239.4 33.0 373 69-452 4-450 (497)
24 PRK05257 malate:quinone oxidor 100.0 1.6E-25 3.6E-30 241.8 33.0 373 69-452 3-448 (494)
25 PTZ00383 malate:quinone oxidor 99.9 3.2E-25 7E-30 238.5 31.7 360 69-456 43-476 (497)
26 TIGR03197 MnmC_Cterm tRNA U-34 99.9 1.5E-24 3.2E-29 230.2 25.7 318 86-454 1-362 (381)
27 KOG2853 Possible oxidoreductas 99.9 5.5E-24 1.2E-28 205.4 26.2 351 70-454 85-482 (509)
28 KOG2844 Dimethylglycine dehydr 99.9 8.5E-24 1.8E-28 220.2 23.1 342 71-454 39-401 (856)
29 KOG2820 FAD-dependent oxidored 99.9 6.4E-22 1.4E-26 191.8 28.5 350 69-455 5-379 (399)
30 KOG2852 Possible oxidoreductas 99.8 8.6E-20 1.9E-24 172.9 17.3 334 71-454 10-363 (380)
31 KOG3923 D-aspartate oxidase [A 99.8 4.5E-19 9.8E-24 169.3 20.9 319 71-455 3-337 (342)
32 PF06039 Mqo: Malate:quinone o 99.7 2.9E-15 6.2E-20 153.7 31.0 333 70-408 2-399 (488)
33 PRK06481 fumarate reductase fl 99.7 5.5E-16 1.2E-20 169.8 22.4 194 69-298 59-253 (506)
34 PRK07121 hypothetical protein; 99.6 5.9E-15 1.3E-19 161.7 17.2 206 69-298 18-241 (492)
35 PRK06185 hypothetical protein; 99.6 4.5E-13 9.7E-18 143.7 24.3 147 229-385 105-252 (407)
36 TIGR01813 flavo_cyto_c flavocy 99.6 1.3E-13 2.8E-18 149.2 18.8 192 73-298 1-194 (439)
37 PRK09078 sdhA succinate dehydr 99.5 3.7E-13 8.1E-18 150.0 19.6 204 69-298 10-214 (598)
38 PF00890 FAD_binding_2: FAD bi 99.5 3.7E-13 8E-18 144.8 18.9 197 73-297 1-204 (417)
39 COG0644 FixC Dehydrogenases (f 99.5 6.2E-12 1.3E-16 134.0 28.0 211 226-454 89-306 (396)
40 PRK07573 sdhA succinate dehydr 99.5 1.9E-13 4E-18 153.1 17.0 216 49-298 16-234 (640)
41 PTZ00139 Succinate dehydrogena 99.5 4.6E-13 1E-17 149.5 19.5 204 69-298 27-231 (617)
42 PRK06452 sdhA succinate dehydr 99.5 5.5E-13 1.2E-17 147.8 19.7 197 68-296 2-198 (566)
43 PLN00128 Succinate dehydrogena 99.5 5.5E-13 1.2E-17 148.8 19.1 202 69-298 48-252 (635)
44 PRK08958 sdhA succinate dehydr 99.5 6.5E-13 1.4E-17 147.6 19.6 200 69-298 5-208 (588)
45 PRK06134 putative FAD-binding 99.5 8.3E-13 1.8E-17 147.0 20.5 72 227-302 212-284 (581)
46 PRK12839 hypothetical protein; 99.5 4.3E-13 9.2E-18 148.4 18.0 70 229-300 211-280 (572)
47 PRK08274 tricarballylate dehyd 99.5 5.3E-13 1.2E-17 145.5 18.5 190 70-298 3-194 (466)
48 TIGR02032 GG-red-SF geranylger 99.5 2.8E-12 6.1E-17 131.0 22.8 200 228-449 87-293 (295)
49 PRK12845 3-ketosteroid-delta-1 99.5 6.4E-13 1.4E-17 146.7 17.8 63 232-298 217-280 (564)
50 PRK12842 putative succinate de 99.5 1.3E-12 2.7E-17 145.6 20.2 66 232-301 214-280 (574)
51 PRK07057 sdhA succinate dehydr 99.5 7E-13 1.5E-17 147.6 18.1 205 68-298 9-213 (591)
52 PLN02697 lycopene epsilon cycl 99.5 3E-11 6.4E-16 131.4 29.1 205 227-454 187-409 (529)
53 PRK12835 3-ketosteroid-delta-1 99.5 6.2E-13 1.3E-17 147.7 16.5 63 233-298 214-277 (584)
54 PRK04176 ribulose-1,5-biphosph 99.5 1.6E-12 3.6E-17 129.1 17.7 70 229-299 101-176 (257)
55 PRK08626 fumarate reductase fl 99.5 9.5E-13 2.1E-17 147.7 17.6 65 232-298 158-222 (657)
56 PRK12837 3-ketosteroid-delta-1 99.5 1.6E-12 3.4E-17 142.8 18.5 63 232-298 173-237 (513)
57 PRK07804 L-aspartate oxidase; 99.5 1.8E-12 3.8E-17 143.1 18.7 195 69-297 14-211 (541)
58 PLN02815 L-aspartate oxidase 99.5 1.2E-12 2.7E-17 144.7 17.2 194 69-297 27-223 (594)
59 PRK08641 sdhA succinate dehydr 99.5 2.3E-12 4.9E-17 143.5 19.3 195 71-297 3-201 (589)
60 PRK08205 sdhA succinate dehydr 99.5 1.8E-12 3.8E-17 144.5 18.1 198 70-298 4-208 (583)
61 PRK07803 sdhA succinate dehydr 99.4 2.4E-12 5.3E-17 144.1 18.5 196 69-298 6-215 (626)
62 PRK06263 sdhA succinate dehydr 99.4 2.8E-12 6E-17 142.0 18.4 193 69-297 5-198 (543)
63 PRK05945 sdhA succinate dehydr 99.4 3.2E-12 6.9E-17 142.3 18.5 195 70-298 2-199 (575)
64 PTZ00306 NADH-dependent fumara 99.4 2.6E-12 5.6E-17 153.1 18.3 202 61-298 402-622 (1167)
65 TIGR01812 sdhA_frdA_Gneg succi 99.4 6.3E-12 1.4E-16 140.2 19.5 191 73-297 1-192 (566)
66 PRK12844 3-ketosteroid-delta-1 99.4 8.3E-12 1.8E-16 138.2 20.1 63 232-298 208-271 (557)
67 PRK06069 sdhA succinate dehydr 99.4 7.4E-12 1.6E-16 139.5 18.8 195 68-297 2-201 (577)
68 PRK09077 L-aspartate oxidase; 99.4 9.7E-12 2.1E-16 137.3 19.1 197 69-297 6-208 (536)
69 PRK09231 fumarate reductase fl 99.4 9.3E-12 2E-16 138.4 18.9 193 69-297 2-197 (582)
70 PRK07395 L-aspartate oxidase; 99.4 5.7E-12 1.2E-16 138.9 16.9 190 69-297 7-198 (553)
71 TIGR01176 fum_red_Fp fumarate 99.4 1.1E-11 2.3E-16 137.6 19.1 193 70-298 2-197 (580)
72 PRK08071 L-aspartate oxidase; 99.4 8.7E-12 1.9E-16 136.7 17.8 189 71-297 3-191 (510)
73 TIGR02023 BchP-ChlP geranylger 99.4 1.5E-10 3.2E-15 123.3 26.3 204 228-454 88-301 (388)
74 PRK07843 3-ketosteroid-delta-1 99.4 7.4E-12 1.6E-16 138.7 16.7 63 232-298 208-271 (557)
75 PRK06854 adenylylsulfate reduc 99.4 1.1E-11 2.4E-16 138.4 18.0 186 69-298 9-197 (608)
76 PRK06175 L-aspartate oxidase; 99.4 8.7E-12 1.9E-16 133.9 16.6 187 70-297 3-190 (433)
77 PRK10015 oxidoreductase; Provi 99.4 1.6E-10 3.6E-15 124.0 26.2 68 229-305 105-172 (429)
78 TIGR00551 nadB L-aspartate oxi 99.4 1.4E-11 3E-16 134.8 18.1 189 71-298 2-191 (488)
79 PRK12843 putative FAD-binding 99.4 1.7E-11 3.8E-16 136.4 19.1 66 229-298 218-284 (578)
80 PRK08275 putative oxidoreducta 99.4 1E-11 2.3E-16 137.7 17.1 65 232-297 137-201 (554)
81 PRK08773 2-octaprenyl-3-methyl 99.4 2.2E-11 4.7E-16 130.0 18.9 86 228-322 109-194 (392)
82 TIGR01811 sdhA_Bsu succinate d 99.4 1.4E-11 3E-16 137.4 17.6 192 74-297 1-197 (603)
83 PRK12834 putative FAD-binding 99.4 1.4E-11 3E-16 136.6 17.2 206 70-298 3-229 (549)
84 COG1635 THI4 Ribulose 1,5-bisp 99.3 1.8E-11 3.9E-16 112.9 14.3 70 228-298 105-180 (262)
85 PRK10157 putative oxidoreducta 99.3 7.8E-11 1.7E-15 126.6 21.8 70 228-306 104-173 (428)
86 TIGR01790 carotene-cycl lycope 99.3 7.5E-10 1.6E-14 118.0 29.1 204 228-454 81-299 (388)
87 PF05834 Lycopene_cycl: Lycope 99.3 2.9E-10 6.2E-15 120.1 24.8 200 227-453 82-290 (374)
88 PLN00093 geranylgeranyl diphos 99.3 5.2E-10 1.1E-14 120.4 26.5 76 228-306 128-208 (450)
89 TIGR02061 aprA adenosine phosp 99.3 2.5E-11 5.5E-16 134.4 16.3 186 73-298 1-193 (614)
90 PRK07512 L-aspartate oxidase; 99.3 2.8E-11 6E-16 132.8 16.6 190 69-297 7-198 (513)
91 TIGR00292 thiazole biosynthesi 99.3 5.3E-11 1.1E-15 117.9 16.7 68 230-297 98-171 (254)
92 PRK08244 hypothetical protein; 99.3 6.8E-10 1.5E-14 122.0 27.1 72 229-306 97-168 (493)
93 TIGR02028 ChlP geranylgeranyl 99.3 3.2E-10 6.9E-15 120.8 23.1 209 228-454 89-307 (398)
94 PRK07494 2-octaprenyl-6-methox 99.3 3.9E-11 8.5E-16 127.8 15.8 69 229-306 108-176 (388)
95 PLN02463 lycopene beta cyclase 99.3 1.9E-09 4.2E-14 115.5 27.9 204 227-454 109-331 (447)
96 PRK07333 2-octaprenyl-6-methox 99.3 1.3E-10 2.9E-15 124.5 18.9 70 228-306 107-176 (403)
97 COG2081 Predicted flavoprotein 99.3 1.2E-10 2.5E-15 117.8 17.0 58 231-296 110-167 (408)
98 PRK06184 hypothetical protein; 99.3 4.8E-10 1E-14 123.5 23.2 71 231-307 108-178 (502)
99 COG1053 SdhA Succinate dehydro 99.3 4.9E-11 1.1E-15 130.3 14.8 198 69-296 4-202 (562)
100 PRK06126 hypothetical protein; 99.3 3.3E-10 7.1E-15 126.1 21.7 74 229-306 123-197 (545)
101 PRK07608 ubiquinone biosynthes 99.3 2.2E-10 4.7E-15 122.1 19.4 70 228-307 107-177 (388)
102 PF01494 FAD_binding_3: FAD bi 99.3 3.4E-10 7.4E-15 118.7 20.4 74 229-306 108-181 (356)
103 PF03486 HI0933_like: HI0933-l 99.3 5.4E-11 1.2E-15 125.5 14.1 60 230-296 107-166 (409)
104 PF01946 Thi4: Thi4 family; PD 99.3 3.3E-11 7.1E-16 112.2 10.5 67 229-296 93-165 (230)
105 PRK08020 ubiF 2-octaprenyl-3-m 99.2 3.5E-10 7.6E-15 120.7 19.9 85 229-322 109-194 (391)
106 PLN02985 squalene monooxygenas 99.2 4.9E-10 1.1E-14 122.6 20.8 74 228-306 143-217 (514)
107 TIGR01988 Ubi-OHases Ubiquinon 99.2 1.2E-09 2.6E-14 116.2 22.3 69 229-306 103-172 (385)
108 COG0654 UbiH 2-polyprenyl-6-me 99.2 8E-10 1.7E-14 117.5 20.6 68 229-304 101-169 (387)
109 PRK08013 oxidoreductase; Provi 99.2 3.1E-10 6.7E-15 121.3 17.5 70 228-306 107-177 (400)
110 PRK07364 2-octaprenyl-6-methox 99.2 4.7E-10 1E-14 120.7 19.1 69 232-306 121-190 (415)
111 TIGR01984 UbiH 2-polyprenyl-6- 99.2 1.1E-09 2.4E-14 116.5 21.0 69 229-306 102-171 (382)
112 PRK13800 putative oxidoreducta 99.2 2.7E-10 5.8E-15 133.0 17.3 191 69-297 11-206 (897)
113 PRK06834 hypothetical protein; 99.2 3E-09 6.6E-14 116.0 24.4 67 232-307 100-166 (488)
114 PRK11445 putative oxidoreducta 99.2 1.1E-08 2.3E-13 107.4 27.2 202 229-454 96-301 (351)
115 PRK06183 mhpA 3-(3-hydroxyphen 99.2 2.3E-09 5.1E-14 119.0 22.7 72 230-306 111-183 (538)
116 PRK07190 hypothetical protein; 99.2 2.6E-09 5.6E-14 116.5 22.3 66 232-306 109-174 (487)
117 PRK05714 2-octaprenyl-3-methyl 99.2 1.3E-09 2.9E-14 116.8 19.8 70 228-306 108-177 (405)
118 PRK09126 hypothetical protein; 99.2 9E-10 2E-14 117.6 18.0 67 231-306 109-176 (392)
119 PRK07045 putative monooxygenas 99.2 9.1E-09 2E-13 109.6 25.5 66 230-302 104-170 (388)
120 PRK08401 L-aspartate oxidase; 99.2 7.1E-10 1.5E-14 120.5 16.6 176 72-299 2-178 (466)
121 PRK05732 2-octaprenyl-6-methox 99.1 7.3E-09 1.6E-13 110.7 23.0 67 231-306 111-178 (395)
122 TIGR01372 soxA sarcosine oxida 99.1 8.4E-09 1.8E-13 121.6 25.3 63 534-599 505-567 (985)
123 TIGR02485 CobZ_N-term precorri 99.1 9.9E-10 2.2E-14 118.6 16.1 62 232-298 123-185 (432)
124 PRK06847 hypothetical protein; 99.1 7.6E-09 1.7E-13 109.7 22.2 63 228-298 103-165 (375)
125 PRK08294 phenol 2-monooxygenas 99.1 1.1E-08 2.4E-13 114.9 23.8 76 229-306 138-219 (634)
126 TIGR02730 carot_isom carotene 99.1 3.8E-09 8.2E-14 116.0 19.5 58 232-296 229-286 (493)
127 PRK05192 tRNA uridine 5-carbox 99.1 8E-10 1.7E-14 120.3 13.8 64 227-298 95-159 (618)
128 PF12831 FAD_oxidored: FAD dep 99.1 1.4E-10 3E-15 124.7 7.6 72 229-306 87-158 (428)
129 PRK08850 2-octaprenyl-6-methox 99.1 2.9E-09 6.3E-14 114.1 17.8 67 231-306 110-177 (405)
130 PLN02661 Putative thiazole syn 99.1 2.5E-09 5.4E-14 108.8 15.9 63 232-296 172-244 (357)
131 TIGR01989 COQ6 Ubiquinone bios 99.1 2.8E-09 6E-14 115.3 16.3 72 229-307 114-193 (437)
132 PRK06617 2-octaprenyl-6-methox 99.1 2.7E-09 5.9E-14 113.0 15.7 69 228-306 100-169 (374)
133 COG1233 Phytoene dehydrogenase 99.1 3.3E-09 7.1E-14 115.8 16.2 56 232-294 224-279 (487)
134 PRK08243 4-hydroxybenzoate 3-m 99.1 4.2E-08 9.1E-13 104.7 24.4 69 232-306 103-172 (392)
135 KOG1298 Squalene monooxygenase 99.0 9.6E-09 2.1E-13 102.3 17.5 71 229-304 144-215 (509)
136 PRK08849 2-octaprenyl-3-methyl 99.0 6.7E-09 1.5E-13 110.4 18.0 66 232-306 110-176 (384)
137 PRK07538 hypothetical protein; 99.0 3.9E-08 8.5E-13 105.6 23.8 75 228-306 98-174 (413)
138 PRK08132 FAD-dependent oxidore 99.0 1.7E-08 3.7E-13 112.4 20.8 71 231-307 124-195 (547)
139 TIGR01789 lycopene_cycl lycope 99.0 6.4E-08 1.4E-12 101.9 23.4 150 228-406 85-239 (370)
140 PRK13977 myosin-cross-reactive 99.0 6E-09 1.3E-13 112.4 15.5 66 232-298 226-295 (576)
141 PRK08163 salicylate hydroxylas 99.0 5.8E-09 1.3E-13 111.5 15.1 66 228-302 105-171 (396)
142 PRK06996 hypothetical protein; 99.0 1.1E-08 2.4E-13 109.2 17.2 74 228-306 111-184 (398)
143 PF00732 GMC_oxred_N: GMC oxid 99.0 2.3E-09 4.9E-14 109.8 11.1 69 236-305 196-268 (296)
144 KOG2404 Fumarate reductase, fl 98.9 1.3E-08 2.8E-13 99.0 13.8 56 246-304 159-217 (477)
145 PRK07588 hypothetical protein; 98.9 2.7E-08 5.8E-13 106.2 17.6 64 230-303 101-164 (391)
146 TIGR03378 glycerol3P_GlpB glyc 98.9 3.8E-08 8.2E-13 103.1 18.1 67 232-303 263-330 (419)
147 TIGR02734 crtI_fam phytoene de 98.9 2.7E-08 5.9E-13 109.7 16.9 58 232-296 219-276 (502)
148 PRK06753 hypothetical protein; 98.9 2.3E-07 5.1E-12 98.3 23.1 67 229-306 95-161 (373)
149 COG0029 NadB Aspartate oxidase 98.9 2.3E-08 4.9E-13 103.8 14.5 189 73-299 9-199 (518)
150 PRK07208 hypothetical protein; 98.9 4.3E-08 9.3E-13 107.5 17.1 62 232-295 218-279 (479)
151 TIGR01810 betA choline dehydro 98.9 5.7E-08 1.2E-12 107.7 17.9 68 236-306 197-266 (532)
152 PTZ00367 squalene epoxidase; P 98.9 2E-07 4.3E-12 102.9 21.8 35 70-104 32-66 (567)
153 PLN02612 phytoene desaturase 98.9 3.2E-06 6.9E-11 94.1 31.1 60 231-296 307-366 (567)
154 TIGR00136 gidA glucose-inhibit 98.9 2.4E-08 5.3E-13 108.6 13.8 63 227-296 91-154 (617)
155 PF01134 GIDA: Glucose inhibit 98.9 1.6E-08 3.4E-13 104.7 11.4 62 227-296 90-152 (392)
156 PF04820 Trp_halogenase: Trypt 98.8 5.7E-09 1.2E-13 112.6 8.0 65 226-297 148-212 (454)
157 TIGR00275 flavoprotein, HI0933 98.8 2.9E-08 6.2E-13 105.8 13.1 57 231-296 104-160 (400)
158 PRK05868 hypothetical protein; 98.8 2.5E-07 5.3E-12 97.9 19.9 64 231-304 104-167 (372)
159 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 8E-08 1.7E-12 102.3 16.2 69 232-305 103-171 (390)
160 KOG4254 Phytoene desaturase [C 98.8 6E-08 1.3E-12 98.7 13.8 71 217-296 251-321 (561)
161 PLN02172 flavin-containing mon 98.8 9.1E-08 2E-12 103.3 16.1 61 232-296 111-173 (461)
162 PRK07233 hypothetical protein; 98.8 5.9E-06 1.3E-10 89.4 30.5 56 232-295 198-253 (434)
163 PRK06475 salicylate hydroxylas 98.8 6.5E-07 1.4E-11 95.8 22.1 71 229-305 104-175 (400)
164 TIGR02731 phytoene_desat phyto 98.8 3E-07 6.6E-12 100.1 19.1 65 231-296 212-276 (453)
165 TIGR02733 desat_CrtD C-3',4' d 98.8 3.8E-07 8.3E-12 100.3 19.9 62 232-295 232-293 (492)
166 PRK02106 choline dehydrogenase 98.8 2.2E-07 4.8E-12 103.7 18.2 60 244-306 213-273 (560)
167 PRK05675 sdhA succinate dehydr 98.8 1.9E-07 4.2E-12 103.8 17.0 67 231-298 125-191 (570)
168 PRK07236 hypothetical protein; 98.7 1.3E-07 2.9E-12 100.6 14.0 36 69-104 4-39 (386)
169 PF13738 Pyr_redox_3: Pyridine 98.7 1.7E-07 3.7E-12 90.1 13.4 58 231-296 81-138 (203)
170 PTZ00363 rab-GDP dissociation 98.7 6.2E-07 1.3E-11 95.9 18.7 61 232-298 232-292 (443)
171 PLN02487 zeta-carotene desatur 98.7 1.3E-05 2.9E-10 88.4 28.0 62 233-296 296-360 (569)
172 TIGR02462 pyranose_ox pyranose 98.7 7.4E-07 1.6E-11 97.1 17.4 59 245-303 227-287 (544)
173 COG3573 Predicted oxidoreducta 98.6 3.5E-07 7.6E-12 89.6 12.6 36 69-104 3-38 (552)
174 KOG2415 Electron transfer flav 98.6 2.4E-07 5.2E-12 93.3 10.0 77 228-305 179-268 (621)
175 PRK05329 anaerobic glycerol-3- 98.6 5E-06 1.1E-10 88.3 20.5 62 232-298 259-320 (422)
176 TIGR01292 TRX_reduct thioredox 98.6 8.9E-07 1.9E-11 90.6 14.2 34 72-105 1-34 (300)
177 PRK05249 soluble pyridine nucl 98.6 1.5E-06 3.3E-11 94.7 16.8 39 69-107 3-42 (461)
178 PLN02785 Protein HOTHEAD 98.6 1.9E-06 4.2E-11 95.7 17.2 66 240-306 228-301 (587)
179 TIGR02732 zeta_caro_desat caro 98.5 6.4E-06 1.4E-10 89.8 19.3 62 233-296 220-284 (474)
180 PLN02927 antheraxanthin epoxid 98.5 8.5E-07 1.8E-11 98.6 12.5 36 69-104 79-114 (668)
181 COG2072 TrkA Predicted flavopr 98.5 1.9E-06 4.1E-11 92.7 14.1 36 69-104 6-42 (443)
182 TIGR01424 gluta_reduc_2 glutat 98.5 2.1E-06 4.5E-11 93.1 14.5 37 71-107 2-38 (446)
183 TIGR03143 AhpF_homolog putativ 98.5 1.7E-06 3.7E-11 96.2 14.0 35 71-105 4-38 (555)
184 COG0492 TrxB Thioredoxin reduc 98.5 1.1E-06 2.5E-11 89.1 11.5 59 231-299 60-118 (305)
185 TIGR03219 salicylate_mono sali 98.4 4.6E-06 9.9E-11 89.7 16.4 64 229-303 102-165 (414)
186 PRK06467 dihydrolipoamide dehy 98.4 4.9E-06 1.1E-10 90.8 16.3 35 70-104 3-37 (471)
187 TIGR01816 sdhA_forward succina 98.4 3.3E-06 7.1E-11 94.0 15.1 66 231-298 118-183 (565)
188 PRK15317 alkyl hydroperoxide r 98.4 3.7E-06 8E-11 92.9 15.4 57 232-296 266-322 (517)
189 PRK06370 mercuric reductase; V 98.4 3.7E-06 8.1E-11 91.7 15.2 41 69-109 3-43 (463)
190 COG3075 GlpB Anaerobic glycero 98.4 1E-05 2.2E-10 79.7 15.9 60 233-297 259-318 (421)
191 PRK06115 dihydrolipoamide dehy 98.4 5.3E-06 1.2E-10 90.4 15.3 34 71-104 3-36 (466)
192 COG2303 BetA Choline dehydroge 98.4 9.9E-06 2.1E-10 89.5 17.3 68 237-306 207-277 (542)
193 PRK05976 dihydrolipoamide dehy 98.4 7.7E-06 1.7E-10 89.4 16.2 38 70-107 3-40 (472)
194 COG0445 GidA Flavin-dependent 98.4 1E-06 2.2E-11 92.5 8.3 64 227-297 95-159 (621)
195 KOG1335 Dihydrolipoamide dehyd 98.4 1.2E-05 2.6E-10 80.7 15.4 67 231-299 251-319 (506)
196 PF13450 NAD_binding_8: NAD(P) 98.4 5.5E-07 1.2E-11 69.7 4.7 34 76-109 1-34 (68)
197 PRK06416 dihydrolipoamide dehy 98.3 9.6E-06 2.1E-10 88.5 15.0 37 70-106 3-39 (462)
198 COG3380 Predicted NAD/FAD-depe 98.3 2E-06 4.2E-11 82.5 7.8 33 72-104 2-34 (331)
199 PTZ00058 glutathione reductase 98.3 9E-06 1.9E-10 89.8 14.2 39 69-107 46-84 (561)
200 TIGR03140 AhpF alkyl hydropero 98.3 1.4E-05 2.9E-10 88.3 15.5 56 233-296 268-323 (515)
201 PLN02507 glutathione reductase 98.3 2.1E-05 4.5E-10 86.3 16.9 34 69-102 23-56 (499)
202 COG1231 Monoamine oxidase [Ami 98.3 5.9E-06 1.3E-10 85.6 11.5 40 69-108 5-44 (450)
203 COG2509 Uncharacterized FAD-de 98.3 2.7E-05 5.8E-10 80.4 15.8 72 225-303 166-237 (486)
204 PRK10262 thioredoxin reductase 98.2 1.4E-05 3.1E-10 82.7 13.9 37 69-105 4-40 (321)
205 PF00743 FMO-like: Flavin-bind 98.2 8.2E-06 1.8E-10 89.5 12.0 65 230-296 82-150 (531)
206 PRK06327 dihydrolipoamide dehy 98.2 2.9E-05 6.2E-10 85.0 15.9 33 70-102 3-35 (475)
207 KOG1399 Flavin-containing mono 98.2 1.6E-05 3.4E-10 84.7 12.6 62 232-296 90-153 (448)
208 KOG2614 Kynurenine 3-monooxyge 98.2 6.4E-06 1.4E-10 84.1 8.9 33 72-104 3-35 (420)
209 PRK14989 nitrite reductase sub 98.1 0.0014 3.1E-08 76.1 28.0 55 533-593 421-475 (847)
210 PTZ00153 lipoamide dehydrogena 98.1 4.4E-05 9.5E-10 85.7 14.8 35 69-103 114-148 (659)
211 COG1249 Lpd Pyruvate/2-oxoglut 98.1 0.00015 3.2E-09 77.7 18.0 63 231-299 213-277 (454)
212 PF13454 NAD_binding_9: FAD-NA 98.1 6.6E-05 1.4E-09 68.8 13.2 34 75-108 1-39 (156)
213 TIGR01438 TGR thioredoxin and 98.1 7.2E-05 1.6E-09 81.8 15.6 33 71-103 2-34 (484)
214 TIGR01423 trypano_reduc trypan 98.0 9E-05 2E-09 80.9 15.5 34 70-103 2-36 (486)
215 PRK08255 salicylyl-CoA 5-hydro 98.0 0.00019 4.1E-09 82.9 18.5 32 73-104 2-35 (765)
216 PRK07845 flavoprotein disulfid 98.0 0.00013 2.7E-09 79.7 16.1 34 73-106 3-36 (466)
217 PRK12769 putative oxidoreducta 98.0 7.8E-05 1.7E-09 84.8 14.7 59 238-297 512-585 (654)
218 KOG1238 Glucose dehydrogenase/ 98.0 0.0001 2.2E-09 79.8 14.3 61 245-306 267-329 (623)
219 TIGR02374 nitri_red_nirB nitri 98.0 0.0021 4.4E-08 74.7 25.2 58 533-595 409-466 (785)
220 KOG0029 Amine oxidase [Seconda 97.9 9.3E-06 2E-10 88.0 5.5 39 69-107 13-51 (501)
221 PRK08010 pyridine nucleotide-d 97.9 9.4E-06 2E-10 88.0 5.6 34 71-104 3-36 (441)
222 TIGR01421 gluta_reduc_1 glutat 97.9 9.8E-06 2.1E-10 87.9 5.3 37 71-107 2-38 (450)
223 PRK09897 hypothetical protein; 97.9 0.00025 5.5E-09 77.7 16.1 38 72-109 2-42 (534)
224 PF13434 K_oxygenase: L-lysine 97.9 9.3E-05 2E-09 76.8 11.9 34 71-104 2-36 (341)
225 KOG2311 NAD/FAD-utilizing prot 97.8 0.0001 2.2E-09 76.1 10.6 35 69-103 26-60 (679)
226 COG2907 Predicted NAD/FAD-bind 97.8 0.00014 2.9E-09 72.5 10.8 37 70-107 7-43 (447)
227 PRK06116 glutathione reductase 97.8 2E-05 4.2E-10 85.8 5.1 38 70-107 3-40 (450)
228 TIGR00031 UDP-GALP_mutase UDP- 97.8 2.6E-05 5.6E-10 81.6 5.5 37 72-108 2-38 (377)
229 PRK07818 dihydrolipoamide dehy 97.8 2.5E-05 5.4E-10 85.3 5.6 39 71-109 4-42 (466)
230 PLN02576 protoporphyrinogen ox 97.8 2.6E-05 5.6E-10 86.0 5.7 39 69-107 10-50 (496)
231 PRK07251 pyridine nucleotide-d 97.8 2.7E-05 5.9E-10 84.3 5.7 34 71-104 3-36 (438)
232 PRK06292 dihydrolipoamide dehy 97.8 2.8E-05 6E-10 84.9 5.5 37 70-106 2-38 (460)
233 TIGR01350 lipoamide_DH dihydro 97.8 2.7E-05 5.9E-10 85.0 5.4 37 71-107 1-37 (461)
234 PRK14694 putative mercuric red 97.7 3.3E-05 7.1E-10 84.4 5.7 39 69-107 4-42 (468)
235 PRK12809 putative oxidoreducta 97.7 0.00048 1E-08 78.1 15.1 37 71-107 310-346 (639)
236 PLN02268 probable polyamine ox 97.7 3.2E-05 6.9E-10 83.8 5.4 36 73-108 2-37 (435)
237 COG3349 Uncharacterized conser 97.7 2.9E-05 6.3E-10 82.1 4.8 36 73-108 2-37 (485)
238 TIGR02053 MerA mercuric reduct 97.7 3.4E-05 7.4E-10 84.2 5.3 37 72-108 1-37 (463)
239 COG1148 HdrA Heterodisulfide r 97.7 4E-05 8.6E-10 79.3 4.8 38 71-108 124-161 (622)
240 COG1252 Ndh NADH dehydrogenase 97.7 0.004 8.6E-08 65.3 19.5 63 230-303 207-269 (405)
241 PRK11883 protoporphyrinogen ox 97.7 4.2E-05 9.1E-10 83.2 5.0 36 73-108 2-39 (451)
242 PRK09564 coenzyme A disulfide 97.7 0.0003 6.5E-09 76.4 11.5 33 73-105 2-36 (444)
243 TIGR00562 proto_IX_ox protopor 97.6 4.9E-05 1.1E-09 83.0 5.2 36 72-107 3-42 (462)
244 PRK13748 putative mercuric red 97.6 5.7E-05 1.2E-09 84.6 5.4 38 70-107 97-134 (561)
245 COG0562 Glf UDP-galactopyranos 97.6 8.5E-05 1.9E-09 73.2 5.3 36 72-107 2-38 (374)
246 PRK12771 putative glutamate sy 97.6 0.00026 5.6E-09 79.2 9.8 38 71-108 137-174 (564)
247 PRK05335 tRNA (uracil-5-)-meth 97.6 8.2E-05 1.8E-09 78.1 5.0 33 72-104 3-35 (436)
248 PLN02546 glutathione reductase 97.5 0.0001 2.2E-09 81.5 5.4 34 69-102 77-110 (558)
249 PRK13512 coenzyme A disulfide 97.5 0.0008 1.7E-08 72.8 11.8 32 73-104 3-36 (438)
250 PLN02568 polyamine oxidase 97.5 0.00014 3.1E-09 80.2 5.9 40 69-108 3-47 (539)
251 COG1232 HemY Protoporphyrinoge 97.5 0.00012 2.5E-09 77.7 4.8 35 73-107 2-38 (444)
252 PRK12416 protoporphyrinogen ox 97.4 0.00013 2.8E-09 79.7 4.8 35 73-107 3-43 (463)
253 KOG0405 Pyridine nucleotide-di 97.4 0.0013 2.8E-08 65.6 11.1 46 69-115 18-63 (478)
254 PLN02676 polyamine oxidase 97.4 0.00021 4.6E-09 78.1 5.9 39 70-108 25-64 (487)
255 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00017 3.6E-09 76.4 4.8 33 72-104 1-33 (433)
256 PRK14727 putative mercuric red 97.4 0.00018 3.9E-09 78.8 5.1 36 69-104 14-49 (479)
257 PTZ00052 thioredoxin reductase 97.3 0.00019 4.1E-09 78.9 4.8 33 71-103 5-37 (499)
258 TIGR03315 Se_ygfK putative sel 97.3 0.00025 5.4E-09 82.6 5.9 39 70-108 536-574 (1012)
259 PF07992 Pyr_redox_2: Pyridine 97.3 0.00026 5.6E-09 67.7 5.1 32 73-104 1-32 (201)
260 PRK12831 putative oxidoreducta 97.3 0.00031 6.7E-09 76.5 5.9 38 69-106 138-175 (464)
261 PF06100 Strep_67kDa_ant: Stre 97.3 0.0026 5.7E-08 67.3 12.2 65 232-298 207-276 (500)
262 PRK05976 dihydrolipoamide dehy 97.3 0.0032 6.8E-08 69.0 13.6 33 72-104 181-213 (472)
263 PLN02328 lysine-specific histo 97.3 0.00034 7.4E-09 79.6 5.7 39 70-108 237-275 (808)
264 PRK06115 dihydrolipoamide dehy 97.2 0.0043 9.3E-08 67.8 14.0 34 71-104 174-207 (466)
265 TIGR01350 lipoamide_DH dihydro 97.2 0.0037 7.9E-08 68.3 13.2 34 71-104 170-203 (461)
266 PRK04965 NADH:flavorubredoxin 97.2 0.0049 1.1E-07 65.4 13.7 60 239-306 190-250 (377)
267 PLN02529 lysine-specific histo 97.2 0.00042 9.2E-09 78.4 5.7 36 70-105 159-194 (738)
268 TIGR03169 Nterm_to_SelD pyridi 97.2 0.0013 2.8E-08 69.4 8.7 32 73-104 1-35 (364)
269 PRK07818 dihydrolipoamide dehy 97.2 0.006 1.3E-07 66.7 14.1 33 72-104 173-205 (466)
270 PF00070 Pyr_redox: Pyridine n 97.2 0.00071 1.5E-08 54.2 5.0 31 74-104 2-32 (80)
271 TIGR01316 gltA glutamate synth 97.1 0.0044 9.6E-08 67.3 12.7 33 72-104 273-305 (449)
272 PRK06416 dihydrolipoamide dehy 97.1 0.0053 1.2E-07 67.0 13.1 33 72-104 173-205 (462)
273 TIGR01316 gltA glutamate synth 97.1 0.00066 1.4E-08 73.6 5.8 38 69-106 131-168 (449)
274 PRK12831 putative oxidoreducta 97.1 0.0058 1.3E-07 66.5 13.0 33 72-104 282-314 (464)
275 PRK12779 putative bifunctional 97.1 0.00062 1.3E-08 79.9 5.7 36 70-105 305-340 (944)
276 TIGR02053 MerA mercuric reduct 97.1 0.007 1.5E-07 66.1 13.5 33 72-104 167-199 (463)
277 COG3634 AhpF Alkyl hydroperoxi 97.1 0.0016 3.4E-08 65.0 7.3 62 232-299 266-328 (520)
278 PRK06912 acoL dihydrolipoamide 97.0 0.00066 1.4E-08 74.0 5.2 35 73-107 2-36 (458)
279 PRK06912 acoL dihydrolipoamide 97.0 0.0076 1.7E-07 65.7 13.4 33 72-104 171-203 (458)
280 PF13434 K_oxygenase: L-lysine 97.0 0.0052 1.1E-07 63.9 11.5 47 246-294 293-339 (341)
281 PRK09754 phenylpropionate diox 97.0 0.01 2.3E-07 63.3 14.1 33 72-104 145-177 (396)
282 PRK12810 gltD glutamate syntha 97.0 0.00083 1.8E-08 73.4 5.8 65 238-304 335-410 (471)
283 PRK09853 putative selenate red 97.0 0.00078 1.7E-08 78.2 5.8 37 71-107 539-575 (1019)
284 PRK07846 mycothione reductase; 97.0 0.00072 1.6E-08 73.4 4.8 35 71-107 1-35 (451)
285 PRK04965 NADH:flavorubredoxin 97.0 0.0048 1.1E-07 65.4 11.1 33 72-104 3-37 (377)
286 PRK06370 mercuric reductase; V 97.0 0.0094 2E-07 65.1 13.5 33 72-104 172-204 (463)
287 PRK06327 dihydrolipoamide dehy 97.0 0.01 2.3E-07 64.9 13.9 33 72-104 184-216 (475)
288 PLN02852 ferredoxin-NADP+ redu 97.0 0.0011 2.3E-08 72.0 5.9 37 71-107 26-64 (491)
289 PRK11749 dihydropyrimidine deh 97.0 0.0011 2.3E-08 72.3 5.9 37 70-106 139-175 (457)
290 PRK12778 putative bifunctional 97.0 0.00099 2.1E-08 77.2 5.8 36 70-105 430-465 (752)
291 PRK12775 putative trifunctiona 96.9 0.00095 2.1E-08 79.1 5.6 57 240-297 617-687 (1006)
292 KOG0404 Thioredoxin reductase 96.9 0.0031 6.8E-08 59.1 7.5 58 232-299 70-127 (322)
293 PF10518 TAT_signal: TAT (twin 96.9 0.00059 1.3E-08 41.3 1.8 18 1-18 2-19 (26)
294 TIGR03140 AhpF alkyl hydropero 96.9 0.011 2.3E-07 65.5 12.9 50 245-296 401-450 (515)
295 PRK05249 soluble pyridine nucl 96.9 0.011 2.4E-07 64.4 12.9 34 71-104 175-208 (461)
296 COG4529 Uncharacterized protei 96.8 0.011 2.5E-07 62.2 11.9 38 72-109 2-43 (474)
297 TIGR03452 mycothione_red mycot 96.8 0.0011 2.4E-08 72.0 4.6 35 71-107 2-36 (452)
298 KOG4716 Thioredoxin reductase 96.8 0.0017 3.7E-08 64.4 5.2 44 69-112 17-61 (503)
299 KOG1276 Protoporphyrinogen oxi 96.8 0.0013 2.8E-08 67.6 4.4 35 71-105 11-47 (491)
300 TIGR02374 nitri_red_nirB nitri 96.8 0.005 1.1E-07 71.5 10.0 57 533-593 471-528 (785)
301 PF04324 Fer2_BFD: BFD-like [2 96.8 0.001 2.3E-08 48.9 2.8 52 535-591 2-54 (55)
302 PRK07251 pyridine nucleotide-d 96.8 0.014 3E-07 63.3 12.7 33 72-104 158-190 (438)
303 PRK12814 putative NADPH-depend 96.8 0.0017 3.7E-08 73.8 5.7 37 70-106 192-228 (652)
304 PRK06467 dihydrolipoamide dehy 96.8 0.016 3.4E-07 63.4 13.1 33 72-104 175-207 (471)
305 PRK06116 glutathione reductase 96.8 0.017 3.8E-07 62.7 13.4 33 72-104 168-200 (450)
306 PRK14989 nitrite reductase sub 96.8 0.0087 1.9E-07 69.7 11.4 58 531-593 480-537 (847)
307 PRK09564 coenzyme A disulfide 96.7 0.016 3.6E-07 62.8 13.0 33 72-104 150-182 (444)
308 TIGR01421 gluta_reduc_1 glutat 96.7 0.017 3.7E-07 62.8 12.9 33 72-104 167-199 (450)
309 PLN03000 amine oxidase 96.7 0.0018 3.9E-08 73.9 5.5 39 70-108 183-221 (881)
310 KOG2960 Protein involved in th 96.7 0.00063 1.4E-08 63.0 1.4 35 70-104 75-111 (328)
311 TIGR01318 gltD_gamma_fam gluta 96.7 0.0023 5E-08 69.8 5.9 37 70-106 140-176 (467)
312 PRK06567 putative bifunctional 96.7 0.0019 4E-08 74.3 5.2 56 239-295 647-727 (1028)
313 TIGR01292 TRX_reduct thioredox 96.7 0.025 5.5E-07 57.6 13.0 48 246-296 191-238 (300)
314 PRK15317 alkyl hydroperoxide r 96.6 0.023 5E-07 62.9 13.0 50 245-296 400-449 (517)
315 PRK14727 putative mercuric red 96.5 0.025 5.5E-07 61.9 12.8 32 72-103 189-220 (479)
316 PRK08010 pyridine nucleotide-d 96.5 0.022 4.8E-07 61.7 12.2 33 72-104 159-191 (441)
317 PLN02976 amine oxidase 96.5 0.003 6.5E-08 74.9 5.6 39 70-108 692-730 (1713)
318 PLN02507 glutathione reductase 96.5 0.027 5.8E-07 62.0 12.9 33 72-104 204-236 (499)
319 PTZ00058 glutathione reductase 96.5 0.027 5.8E-07 62.6 12.7 34 71-104 237-270 (561)
320 PRK12770 putative glutamate sy 96.5 0.0038 8.2E-08 65.5 5.8 37 71-107 18-54 (352)
321 PRK11749 dihydropyrimidine deh 96.5 0.028 6.2E-07 61.2 12.8 32 72-103 274-306 (457)
322 KOG0685 Flavin-containing amin 96.5 0.0035 7.5E-08 65.5 5.1 36 70-105 20-56 (498)
323 TIGR01317 GOGAT_sm_gam glutama 96.5 0.0038 8.2E-08 68.4 5.7 35 71-105 143-177 (485)
324 TIGR01424 gluta_reduc_2 glutat 96.5 0.03 6.6E-07 60.8 12.7 33 72-104 167-199 (446)
325 PRK10262 thioredoxin reductase 96.5 0.037 8E-07 57.2 12.8 53 243-297 196-249 (321)
326 PRK12778 putative bifunctional 96.4 0.029 6.2E-07 65.2 13.0 32 72-103 571-603 (752)
327 PTZ00153 lipoamide dehydrogena 96.4 0.04 8.7E-07 62.2 13.6 33 72-104 313-345 (659)
328 PTZ00188 adrenodoxin reductase 96.4 0.0052 1.1E-07 65.9 5.8 37 71-107 39-76 (506)
329 PRK07845 flavoprotein disulfid 96.3 0.043 9.4E-07 59.9 13.1 33 72-104 178-210 (466)
330 TIGR01438 TGR thioredoxin and 96.3 0.05 1.1E-06 59.6 13.4 31 72-102 181-211 (484)
331 TIGR03385 CoA_CoA_reduc CoA-di 96.3 0.059 1.3E-06 58.1 13.9 33 72-104 138-170 (427)
332 TIGR01423 trypano_reduc trypan 96.3 0.049 1.1E-06 59.6 13.1 52 238-296 237-288 (486)
333 TIGR01318 gltD_gamma_fam gluta 96.2 0.059 1.3E-06 58.8 13.0 33 72-104 283-316 (467)
334 PRK14694 putative mercuric red 96.2 0.061 1.3E-06 58.8 13.1 31 72-102 179-209 (468)
335 PRK06292 dihydrolipoamide dehy 96.2 0.068 1.5E-06 58.3 13.4 33 72-104 170-202 (460)
336 PRK13984 putative oxidoreducta 96.2 0.007 1.5E-07 68.4 5.8 39 70-108 282-320 (604)
337 PRK13748 putative mercuric red 96.1 0.054 1.2E-06 60.7 12.7 32 72-103 271-302 (561)
338 PRK12779 putative bifunctional 96.1 0.068 1.5E-06 63.1 13.4 32 72-103 448-479 (944)
339 PF00996 GDI: GDP dissociation 96.0 0.0074 1.6E-07 64.2 4.8 53 232-291 232-284 (438)
340 PTZ00052 thioredoxin reductase 96.0 0.099 2.1E-06 57.6 13.6 31 72-102 183-213 (499)
341 PTZ00318 NADH dehydrogenase-li 96.0 0.078 1.7E-06 57.1 12.5 56 237-304 233-288 (424)
342 PRK12770 putative glutamate sy 95.9 0.082 1.8E-06 55.5 12.3 33 72-104 173-206 (352)
343 PRK12810 gltD glutamate syntha 95.8 0.08 1.7E-06 57.9 11.9 33 72-104 282-315 (471)
344 KOG1336 Monodehydroascorbate/f 95.8 0.089 1.9E-06 55.4 11.4 54 237-296 260-313 (478)
345 COG0493 GltD NADPH-dependent g 95.8 0.0098 2.1E-07 63.9 4.5 35 72-106 124-158 (457)
346 PRK09754 phenylpropionate diox 95.8 0.011 2.5E-07 63.0 5.1 65 231-304 185-250 (396)
347 PLN02546 glutathione reductase 95.7 0.14 3.1E-06 56.9 13.5 33 72-104 253-285 (558)
348 COG1206 Gid NAD(FAD)-utilizing 95.7 0.011 2.4E-07 58.8 3.9 34 72-105 4-37 (439)
349 PRK12775 putative trifunctiona 95.3 0.18 3.9E-06 60.2 13.0 32 72-103 572-604 (1006)
350 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.026 5.7E-07 52.9 4.8 31 74-104 2-32 (180)
351 KOG3855 Monooxygenase involved 95.2 0.019 4.1E-07 59.0 4.0 36 69-104 34-73 (481)
352 TIGR03862 flavo_PP4765 unchara 95.2 0.091 2E-06 55.1 9.2 68 230-306 84-161 (376)
353 PTZ00318 NADH dehydrogenase-li 95.0 0.025 5.4E-07 61.0 4.5 35 70-104 9-43 (424)
354 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.045 9.8E-07 50.1 4.6 31 74-104 2-32 (157)
355 KOG4405 GDP dissociation inhib 94.5 0.04 8.7E-07 56.4 4.1 50 69-118 6-56 (547)
356 COG5044 MRS6 RAB proteins gera 94.5 0.061 1.3E-06 54.6 5.3 42 70-111 5-46 (434)
357 KOG1800 Ferredoxin/adrenodoxin 94.4 0.057 1.2E-06 55.0 5.0 38 71-108 20-59 (468)
358 PRK12814 putative NADPH-depend 94.4 0.44 9.5E-06 54.3 12.8 33 72-104 324-357 (652)
359 COG3486 IucD Lysine/ornithine 94.4 0.86 1.9E-05 47.3 13.4 36 69-104 3-39 (436)
360 PF02558 ApbA: Ketopantoate re 94.3 0.065 1.4E-06 48.5 4.8 31 74-104 1-31 (151)
361 KOG2403 Succinate dehydrogenas 94.2 0.045 9.7E-07 58.3 3.9 35 70-104 54-88 (642)
362 TIGR01372 soxA sarcosine oxida 94.1 0.56 1.2E-05 56.2 13.4 59 243-305 362-421 (985)
363 PRK10509 bacterioferritin-asso 94.0 0.14 3E-06 38.8 5.2 53 536-593 3-55 (64)
364 PRK06567 putative bifunctional 94.0 0.27 5.8E-06 57.2 9.9 31 72-102 551-584 (1028)
365 COG0446 HcaD Uncharacterized N 94.0 0.063 1.4E-06 57.3 4.8 34 71-104 136-169 (415)
366 COG0569 TrkA K+ transport syst 93.8 0.071 1.5E-06 51.9 4.2 32 73-104 2-33 (225)
367 PF03721 UDPG_MGDP_dh_N: UDP-g 93.5 0.088 1.9E-06 49.5 4.3 32 73-104 2-33 (185)
368 PRK06129 3-hydroxyacyl-CoA deh 93.5 0.087 1.9E-06 54.1 4.5 32 73-104 4-35 (308)
369 KOG0399 Glutamate synthase [Am 93.5 0.094 2E-06 60.1 4.9 35 71-105 1785-1819(2142)
370 PRK01438 murD UDP-N-acetylmura 93.2 0.1 2.2E-06 57.3 4.8 33 72-104 17-49 (480)
371 PLN02852 ferredoxin-NADP+ redu 93.2 1.3 2.9E-05 48.2 13.3 51 245-296 288-354 (491)
372 TIGR02811 formate_TAT formate 93.0 0.057 1.2E-06 41.0 1.7 16 1-16 9-24 (66)
373 PRK07066 3-hydroxybutyryl-CoA 93.0 0.14 3E-06 52.5 5.1 32 73-104 9-40 (321)
374 TIGR02354 thiF_fam2 thiamine b 92.8 0.25 5.3E-06 47.2 6.2 35 71-105 21-56 (200)
375 PRK07819 3-hydroxybutyryl-CoA 92.5 0.16 3.5E-06 51.4 4.8 32 73-104 7-38 (286)
376 PRK02705 murD UDP-N-acetylmura 92.5 0.14 3.1E-06 55.8 4.8 32 73-104 2-33 (459)
377 COG2906 Bfd Bacterioferritin-a 92.5 0.35 7.6E-06 35.8 5.1 51 536-592 3-53 (63)
378 TIGR01409 TAT_signal_seq Tat ( 92.5 0.098 2.1E-06 32.6 1.9 16 1-16 1-16 (29)
379 PRK06249 2-dehydropantoate 2-r 92.4 0.19 4.1E-06 51.8 5.2 33 71-103 5-37 (313)
380 PRK08293 3-hydroxybutyryl-CoA 92.4 0.16 3.5E-06 51.5 4.7 32 73-104 5-36 (287)
381 KOG1439 RAB proteins geranylge 92.4 0.071 1.5E-06 54.7 2.0 42 70-111 3-44 (440)
382 PRK09260 3-hydroxybutyryl-CoA 92.2 0.17 3.7E-06 51.4 4.6 32 73-104 3-34 (288)
383 PF01593 Amino_oxidase: Flavin 91.9 0.15 3.3E-06 54.4 4.0 53 236-296 213-265 (450)
384 KOG2304 3-hydroxyacyl-CoA dehy 91.9 0.16 3.5E-06 48.0 3.4 33 72-104 12-44 (298)
385 PRK07846 mycothione reductase; 91.6 0.22 4.8E-06 54.1 4.8 34 71-104 166-199 (451)
386 TIGR01470 cysG_Nterm siroheme 91.5 0.28 6.1E-06 47.0 4.8 32 72-103 10-41 (205)
387 COG1179 Dinucleotide-utilizing 91.4 0.36 7.8E-06 46.4 5.3 37 71-107 30-67 (263)
388 PRK07530 3-hydroxybutyryl-CoA 91.4 0.25 5.4E-06 50.3 4.7 32 72-103 5-36 (292)
389 PF13738 Pyr_redox_3: Pyridine 91.3 0.21 4.5E-06 47.5 3.8 34 71-104 167-200 (203)
390 PRK06035 3-hydroxyacyl-CoA deh 91.3 0.26 5.6E-06 50.1 4.7 32 73-104 5-36 (291)
391 PRK14106 murD UDP-N-acetylmura 91.2 0.3 6.5E-06 53.1 5.5 34 71-104 5-38 (450)
392 PRK05708 2-dehydropantoate 2-r 91.2 0.27 5.9E-06 50.3 4.8 32 72-103 3-34 (305)
393 PRK06719 precorrin-2 dehydroge 91.2 0.33 7.1E-06 44.3 4.8 32 71-102 13-44 (157)
394 PF01262 AlaDh_PNT_C: Alanine 91.1 0.33 7.2E-06 44.9 4.8 34 71-104 20-53 (168)
395 PRK06718 precorrin-2 dehydroge 91.0 0.33 7.2E-06 46.4 4.8 32 71-102 10-41 (202)
396 KOG2755 Oxidoreductase [Genera 90.9 0.16 3.6E-06 49.1 2.5 31 74-104 2-34 (334)
397 COG1249 Lpd Pyruvate/2-oxoglut 90.9 0.29 6.4E-06 52.7 4.8 33 72-104 174-206 (454)
398 PRK15116 sulfur acceptor prote 90.8 0.46 1E-05 47.3 5.8 36 70-105 29-65 (268)
399 PRK13512 coenzyme A disulfide 90.8 0.28 6E-06 53.1 4.6 33 72-104 149-181 (438)
400 COG1251 NirB NAD(P)H-nitrite r 90.6 0.37 8E-06 53.6 5.2 57 534-596 413-469 (793)
401 PF01488 Shikimate_DH: Shikima 90.6 0.46 1E-05 42.1 5.1 33 71-103 12-45 (135)
402 COG0686 Ald Alanine dehydrogen 90.6 0.22 4.7E-06 49.6 3.1 34 70-103 167-200 (371)
403 PRK05808 3-hydroxybutyryl-CoA 90.5 0.33 7.1E-06 49.1 4.6 32 73-104 5-36 (282)
404 PF02254 TrkA_N: TrkA-N domain 90.3 0.48 1E-05 40.6 4.8 31 74-104 1-31 (116)
405 PRK12921 2-dehydropantoate 2-r 90.1 0.35 7.6E-06 49.5 4.4 30 73-102 2-31 (305)
406 COG1250 FadB 3-hydroxyacyl-CoA 90.0 0.33 7.1E-06 49.2 4.0 31 73-103 5-35 (307)
407 PRK06522 2-dehydropantoate 2-r 90.0 0.39 8.4E-06 49.1 4.7 31 73-103 2-32 (304)
408 PRK07688 thiamine/molybdopteri 90.0 0.47 1E-05 49.2 5.2 35 71-105 24-59 (339)
409 TIGR01763 MalateDH_bact malate 89.9 0.4 8.7E-06 49.0 4.6 31 73-103 3-34 (305)
410 COG1748 LYS9 Saccharopine dehy 89.8 0.4 8.7E-06 50.2 4.5 31 73-103 3-34 (389)
411 PF13241 NAD_binding_7: Putati 89.8 0.26 5.7E-06 41.4 2.7 33 71-103 7-39 (103)
412 PLN02545 3-hydroxybutyryl-CoA 89.8 0.43 9.3E-06 48.7 4.7 32 73-104 6-37 (295)
413 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.8 0.39 8.5E-06 52.6 4.7 33 72-104 6-38 (503)
414 TIGR03452 mycothione_red mycot 89.7 0.4 8.6E-06 52.2 4.7 33 72-104 170-202 (452)
415 PF00899 ThiF: ThiF family; I 89.7 0.48 1E-05 42.0 4.4 35 72-106 3-38 (135)
416 cd01080 NAD_bind_m-THF_DH_Cycl 89.6 0.56 1.2E-05 43.3 4.9 34 70-103 43-77 (168)
417 PRK11730 fadB multifunctional 89.6 0.37 8.1E-06 55.4 4.6 32 73-104 315-346 (715)
418 cd05292 LDH_2 A subgroup of L- 89.6 0.46 9.9E-06 48.7 4.8 32 73-104 2-35 (308)
419 TIGR02437 FadB fatty oxidation 89.5 0.38 8.3E-06 55.2 4.6 32 73-104 315-346 (714)
420 PRK08229 2-dehydropantoate 2-r 89.4 0.42 9.1E-06 49.8 4.4 31 73-103 4-34 (341)
421 PRK08268 3-hydroxy-acyl-CoA de 89.4 0.52 1.1E-05 51.9 5.3 33 72-104 8-40 (507)
422 cd01487 E1_ThiF_like E1_ThiF_l 89.4 0.52 1.1E-05 43.8 4.6 32 74-105 2-34 (174)
423 cd01483 E1_enzyme_family Super 89.1 0.67 1.5E-05 41.5 5.0 33 74-106 2-35 (143)
424 PRK12475 thiamine/molybdopteri 88.8 0.62 1.3E-05 48.3 5.1 35 71-105 24-59 (338)
425 PRK06130 3-hydroxybutyryl-CoA 88.8 0.54 1.2E-05 48.3 4.7 31 73-103 6-36 (311)
426 TIGR00518 alaDH alanine dehydr 88.8 0.58 1.3E-05 49.3 5.0 33 71-103 167-199 (370)
427 COG1251 NirB NAD(P)H-nitrite r 88.8 1.7 3.6E-05 48.6 8.4 53 533-590 472-524 (793)
428 TIGR02441 fa_ox_alpha_mit fatt 88.6 0.49 1.1E-05 54.5 4.6 32 73-104 337-368 (737)
429 TIGR02356 adenyl_thiF thiazole 88.5 0.75 1.6E-05 43.9 5.1 35 71-105 21-56 (202)
430 PRK04148 hypothetical protein; 88.5 0.48 1E-05 41.7 3.4 32 72-104 18-49 (134)
431 cd01075 NAD_bind_Leu_Phe_Val_D 88.3 0.72 1.6E-05 44.0 4.9 32 72-103 29-60 (200)
432 TIGR03143 AhpF_homolog putativ 88.2 0.5 1.1E-05 52.8 4.3 33 72-104 144-176 (555)
433 TIGR02355 moeB molybdopterin s 88.1 0.79 1.7E-05 45.1 5.1 36 71-106 24-60 (240)
434 PRK14619 NAD(P)H-dependent gly 87.9 0.79 1.7E-05 47.0 5.2 33 72-104 5-37 (308)
435 PRK08644 thiamine biosynthesis 87.9 0.81 1.8E-05 44.1 4.9 35 71-105 28-63 (212)
436 KOG3851 Sulfide:quinone oxidor 87.9 0.52 1.1E-05 47.1 3.6 36 69-104 37-74 (446)
437 cd01339 LDH-like_MDH L-lactate 87.6 0.62 1.3E-05 47.6 4.2 30 74-103 1-31 (300)
438 PTZ00082 L-lactate dehydrogena 87.5 0.78 1.7E-05 47.2 4.9 33 72-104 7-40 (321)
439 PRK14620 NAD(P)H-dependent gly 87.4 0.72 1.6E-05 47.7 4.6 31 73-103 2-32 (326)
440 COG1004 Ugd Predicted UDP-gluc 87.4 0.72 1.6E-05 47.8 4.4 32 73-104 2-33 (414)
441 PRK12549 shikimate 5-dehydroge 87.3 0.82 1.8E-05 46.2 4.8 32 72-103 128-160 (284)
442 PRK08328 hypothetical protein; 87.2 0.99 2.2E-05 44.1 5.2 35 71-105 27-62 (231)
443 PRK11064 wecC UDP-N-acetyl-D-m 87.1 0.8 1.7E-05 49.1 4.9 33 72-104 4-36 (415)
444 PF13478 XdhC_C: XdhC Rossmann 87.1 0.68 1.5E-05 41.1 3.6 31 74-104 1-31 (136)
445 PRK14618 NAD(P)H-dependent gly 87.0 0.81 1.7E-05 47.4 4.7 31 73-103 6-36 (328)
446 PF00056 Ldh_1_N: lactate/mala 86.8 1.1 2.4E-05 40.0 4.9 32 73-104 2-36 (141)
447 PRK11154 fadJ multifunctional 86.8 0.71 1.5E-05 53.1 4.5 31 73-103 311-342 (708)
448 PRK00094 gpsA NAD(P)H-dependen 86.7 0.85 1.8E-05 47.1 4.7 31 73-103 3-33 (325)
449 PRK08223 hypothetical protein; 86.7 1.5 3.4E-05 43.9 6.2 35 71-105 27-62 (287)
450 cd00401 AdoHcyase S-adenosyl-L 86.5 0.89 1.9E-05 48.3 4.7 33 72-104 203-235 (413)
451 TIGR03026 NDP-sugDHase nucleot 86.5 0.78 1.7E-05 49.2 4.4 32 73-104 2-33 (411)
452 PRK07531 bifunctional 3-hydrox 86.4 0.83 1.8E-05 50.2 4.6 32 73-104 6-37 (495)
453 cd00755 YgdL_like Family of ac 86.4 1.5 3.2E-05 42.8 5.9 36 71-106 11-47 (231)
454 cd05311 NAD_bind_2_malic_enz N 86.3 1 2.2E-05 43.9 4.7 33 72-104 26-61 (226)
455 TIGR03736 PRTRC_ThiF PRTRC sys 86.3 1.1 2.4E-05 43.9 4.9 36 70-105 10-56 (244)
456 PRK05690 molybdopterin biosynt 86.3 1.1 2.4E-05 44.2 5.0 35 71-105 32-67 (245)
457 TIGR02440 FadJ fatty oxidation 86.3 0.83 1.8E-05 52.4 4.6 32 73-104 306-338 (699)
458 PF03446 NAD_binding_2: NAD bi 86.0 1.1 2.5E-05 41.0 4.7 31 73-103 3-33 (163)
459 cd00757 ThiF_MoeB_HesA_family 86.0 1.8 3.8E-05 42.3 6.2 35 71-105 21-56 (228)
460 PRK09424 pntA NAD(P) transhydr 85.8 0.89 1.9E-05 49.6 4.4 34 71-104 165-198 (509)
461 PRK02472 murD UDP-N-acetylmura 85.8 0.91 2E-05 49.3 4.5 32 73-104 7-38 (447)
462 PRK06223 malate dehydrogenase; 85.7 1.1 2.3E-05 46.0 4.8 32 72-103 3-35 (307)
463 PRK07417 arogenate dehydrogena 85.7 0.96 2.1E-05 45.7 4.3 31 73-103 2-32 (279)
464 PRK04308 murD UDP-N-acetylmura 85.6 1.3 2.7E-05 48.1 5.5 33 72-104 6-38 (445)
465 PRK00066 ldh L-lactate dehydro 85.4 1.4 3.1E-05 45.2 5.5 34 70-103 5-40 (315)
466 cd05291 HicDH_like L-2-hydroxy 85.1 1.2 2.6E-05 45.7 4.8 32 73-104 2-35 (306)
467 PRK15057 UDP-glucose 6-dehydro 84.9 1.1 2.3E-05 47.6 4.3 31 73-104 2-32 (388)
468 PF00670 AdoHcyase_NAD: S-aden 84.8 1.3 2.8E-05 40.3 4.2 33 72-104 24-56 (162)
469 PRK12548 shikimate 5-dehydroge 84.7 1.2 2.7E-05 45.1 4.6 32 72-103 127-159 (289)
470 TIGR02000 NifU_proper Fe-S clu 84.7 1.6 3.5E-05 44.0 5.3 57 531-592 131-187 (290)
471 cd01485 E1-1_like Ubiquitin ac 84.4 1.8 3.9E-05 41.2 5.3 35 71-105 19-54 (198)
472 COG3634 AhpF Alkyl hydroperoxi 84.3 0.8 1.7E-05 46.3 2.8 31 72-102 355-385 (520)
473 PLN02572 UDP-sulfoquinovose sy 84.1 1.1 2.4E-05 48.6 4.1 30 73-102 49-79 (442)
474 cd01078 NAD_bind_H4MPT_DH NADP 83.8 1.8 4E-05 40.9 5.1 32 72-103 29-61 (194)
475 cd05191 NAD_bind_amino_acid_DH 83.8 2.3 5E-05 34.2 5.0 33 72-105 24-57 (86)
476 cd01492 Aos1_SUMO Ubiquitin ac 83.6 2.8 6E-05 39.9 6.2 35 71-105 21-56 (197)
477 PTZ00117 malate dehydrogenase; 83.5 1.7 3.7E-05 44.7 5.1 34 71-104 5-39 (319)
478 TIGR01505 tartro_sem_red 2-hyd 83.3 1.4 3.1E-05 44.7 4.4 30 74-103 2-31 (291)
479 KOG1371 UDP-glucose 4-epimeras 83.0 1.2 2.6E-05 44.9 3.5 31 73-103 4-35 (343)
480 cd05293 LDH_1 A subgroup of L- 82.9 2 4.4E-05 44.0 5.3 33 72-104 4-38 (312)
481 PRK04690 murD UDP-N-acetylmura 82.8 1.5 3.3E-05 47.9 4.6 33 72-104 9-41 (468)
482 TIGR01915 npdG NADPH-dependent 82.7 1.8 3.9E-05 41.9 4.7 31 73-103 2-33 (219)
483 PRK01710 murD UDP-N-acetylmura 82.7 1.6 3.5E-05 47.5 4.8 32 73-104 16-47 (458)
484 TIGR02853 spore_dpaA dipicolin 82.7 1.7 3.7E-05 44.0 4.6 33 71-103 151-183 (287)
485 COG0771 MurD UDP-N-acetylmuram 82.6 1.4 3.1E-05 47.1 4.1 35 71-105 7-41 (448)
486 PLN02353 probable UDP-glucose 82.4 1.7 3.7E-05 47.2 4.8 32 73-104 3-36 (473)
487 TIGR01381 E1_like_apg7 E1-like 82.4 2.4 5.2E-05 47.1 5.8 35 71-105 338-373 (664)
488 PRK03803 murD UDP-N-acetylmura 82.3 1.6 3.4E-05 47.4 4.5 33 72-104 7-39 (448)
489 cd01484 E1-2_like Ubiquitin ac 82.2 2 4.2E-05 42.0 4.7 32 74-105 2-34 (234)
490 cd01486 Apg7 Apg7 is an E1-lik 82.1 2 4.3E-05 43.3 4.7 33 73-105 1-34 (307)
491 PTZ00142 6-phosphogluconate de 82.0 1.6 3.4E-05 47.5 4.3 33 72-104 2-34 (470)
492 TIGR00936 ahcY adenosylhomocys 82.0 1.8 4E-05 45.8 4.6 33 72-104 196-228 (406)
493 PF03807 F420_oxidored: NADP o 81.9 2.5 5.5E-05 34.6 4.6 30 74-103 2-35 (96)
494 PRK08017 oxidoreductase; Provi 81.9 2 4.2E-05 42.4 4.7 31 73-103 4-35 (256)
495 PRK06153 hypothetical protein; 81.9 1.6 3.5E-05 45.5 4.1 35 71-105 176-211 (393)
496 COG1893 ApbA Ketopantoate redu 81.8 1.6 3.5E-05 44.6 4.1 32 73-104 2-33 (307)
497 cd05290 LDH_3 A subgroup of L- 81.7 2 4.4E-05 43.9 4.8 30 74-103 2-33 (307)
498 COG1252 Ndh NADH dehydrogenase 81.7 1.2 2.5E-05 47.1 3.1 33 72-104 156-201 (405)
499 PRK03369 murD UDP-N-acetylmura 81.6 1.8 4E-05 47.5 4.8 32 72-103 13-44 (488)
500 TIGR00507 aroE shikimate 5-deh 81.5 2 4.4E-05 43.0 4.7 32 72-103 118-149 (270)
No 1
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.9e-98 Score=754.67 Aligned_cols=542 Identities=56% Similarity=0.944 Sum_probs=511.2
Q ss_pred CCCCchHHHHHHHHhccCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhcc
Q 006891 51 AVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFN 130 (627)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~ 130 (627)
..+|+|+..++.++ .+.+|||+|||||.+|+.+|+.++.||+||.|||++||++|+|++|++++|||.||+++++.+
T Consensus 50 ~~~PsRe~~l~~l~---~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~ 126 (680)
T KOG0042|consen 50 ASLPSREDLLEALK---STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISN 126 (680)
T ss_pred CCCCCHHHHHHHhh---cCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHh
Confidence 33558899999988 466799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccc
Q 006891 131 LDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLA 210 (627)
Q Consensus 131 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~ 210 (627)
++...+++++++|.|+.++++.+||++.++|+++|+|+||+.+|+|.|.++|+++++...+....++++++..+.+|.+
T Consensus 127 lD~~qyrlV~eaL~ER~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL- 205 (680)
T KOG0042|consen 127 LDYEQYRLVKEALNERANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPML- 205 (680)
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCccccCCcceeeehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccc-
Confidence 9999999999999999999999999999999999999999999999999999999987788889999999999999999
Q ss_pred cccccCCceEEEEecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEe
Q 006891 211 MKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVN 290 (627)
Q Consensus 211 ~~~~~~~~~g~~~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~ 290 (627)
+.+.+.|++.|+||+.|+.+++..++-.|..+|+.+.++.+|.+|+++++| +|.|+.+.|..||++.+|+|+.|||
T Consensus 206 ---~~~~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~-kv~Ga~~rD~iTG~e~~I~Ak~VVN 281 (680)
T KOG0042|consen 206 ---RKDNLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG-KVIGARARDHITGKEYEIRAKVVVN 281 (680)
T ss_pred ---cccCceeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC-ceeeeEEEEeecCcEEEEEEEEEEe
Confidence 889999999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred ccCCChHHHhhhhcCCCCCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEecCCcEEEecCCCCCCCCCCCCCC
Q 006891 291 AAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPH 370 (627)
Q Consensus 291 AtG~~s~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~ 370 (627)
|||+++|.|++|.+...++.+.|+.|+|+++|..++|...|++.|.++|||++|++||.|.+++|+||.+.+...++.|+
T Consensus 282 ATGpfsDsIr~Mdd~~~~~i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFflPWqg~TIaGTTD~pt~v~~~P~Pt 361 (680)
T KOG0042|consen 282 ATGPFSDSIRKMDDEDAKPICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFLPWQGKTIAGTTDIPTSVTHSPTPT 361 (680)
T ss_pred CCCCccHHHHhhcccccCceeccCCceeEEcccccCCcccccccCCCCCCcEEEEeccCCceeeccCCCCCCCCCCCCCC
Confidence 99999999999998887788999999999999999999999999999999999999999999999999997777899999
Q ss_pred HHHHHHHHHHHhhhcccC--CCccceeeeeeeeeccccCCCC-CCCCCCcccceeeecCCCeEEEecChhhhHHHHHHHH
Q 006891 371 EDEIQFILDAISDYLNVK--VRRTDVLSAWSGIRPLAMDPSA-KNTESISRDHVVCEDFPGLVTITGGKWTTYRSMAEDA 447 (627)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~--l~~~~i~~~~aG~Rp~~~d~~~-~~~~~~~r~~~i~~~~~gl~~~~Gg~~t~~~~~Ae~~ 447 (627)
++++++||+++++|+.++ +.+.||.+.|+|+||+..||.. .++..++|+|+|..+++||++++||||||+|.|||++
T Consensus 362 E~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGKWTTyR~MAEeT 441 (680)
T KOG0042|consen 362 EDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGKWTTYRHMAEET 441 (680)
T ss_pred HHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEecCcchhHHHHHHHH
Confidence 999999999999999544 8899999999999999999843 6788999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCC-CCCCCcccccccCCCCCCcchHHHHHHHHhhhhhccCCCCCCCCCCHHHHHHHHHhhCCcHHHHHHH
Q 006891 448 VNAAIKSGKLNP-SNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAII 526 (627)
Q Consensus 448 ~~~~~~~~~~~~-~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~~~~v~~~ 526 (627)
+|.+++..+|.+ ..+|.|+.+.|.|+++|.+..+..|.++|+ ++.+.++||.+.||++|.+|+.+
T Consensus 442 Vd~aI~~~~lk~~~~~cvT~~l~l~Ga~~wt~~~~~~LvQdyg--------------~e~~vA~hLs~tYG~rA~~Va~~ 507 (680)
T KOG0042|consen 442 VDAAIKAGDLKPARKPCVTKKLKLEGAEGWTPNMYIRLVQDYG--------------MESDVAQHLSQTYGDRAFRVAKM 507 (680)
T ss_pred HHHHHHhCCCCCCCCcccccceEEeccCCCcHHHHHHHHHHhC--------------CcHHHHHHHHHhhcchHHHHHHH
Confidence 999999988876 567999999999999999999999999998 89999999999999999999999
Q ss_pred HhccCC-----CCccccCCCccHHHHHHHHHhcCCCChhHHHHhh-----------------------------------
Q 006891 527 AQNEGL-----GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARR----------------------------------- 566 (627)
Q Consensus 527 ~~~~~~-----~~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RR----------------------------------- 566 (627)
+++... +.++++..||++|||.|+|.+|+++++.|++.||
T Consensus 508 ~k~tgkk~Pivg~rl~~~fpyleAEv~y~v~~e~a~~~~Dv~arr~r~~~~q~~~ar~fl~~~mg~~~~~~~~~~~~i~~ 587 (680)
T KOG0042|consen 508 AKSTGKKWPIVGKRLHPEFPYLEAEVRYGVVREYACTPVDVIARRLREKKKQIEYARTFLNSEMGLSKESTSQMSIPIKL 587 (680)
T ss_pred HHhcCCcCccccccccCCCCchHHHHHhhhhHhhhccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccc
Confidence 987755 5799999999999999999999999999999999
Q ss_pred ---------cccccCCh-HHHhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhc
Q 006891 567 ---------CRLAFLDT-DAAGRALPRIIEIMATEH-KWDKSRRKQELQKAKEFLETFK 614 (627)
Q Consensus 567 ---------tr~~~~~~-~~~~~~~~~v~~~~~~~l-~w~~~~~~~e~~~~~~~~~~~~ 614 (627)
+|+++++. +.+..++..|.++|..+. +||.++.+++++++..++..+.
T Consensus 588 ~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v 646 (680)
T KOG0042|consen 588 TPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFV 646 (680)
T ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhccee
Confidence 66788877 778899999999999999 9999999999999887765444
No 2
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=100.00 E-value=1.2e-88 Score=752.86 Aligned_cols=573 Identities=84% Similarity=1.291 Sum_probs=498.6
Q ss_pred CCCCCCchHHHHHHHHhccCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhh
Q 006891 49 SKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAV 128 (627)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~ 128 (627)
..+..+.|...++.+.......+|||||||||++|+++|++|+++|++|+|||++++++|+|++|++++|+|++|+.+..
T Consensus 49 ~~~~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~~ 128 (627)
T PLN02464 49 PNASVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAV 128 (627)
T ss_pred cCCCCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcccchhhhhhhHHHHHHHHh
Confidence 34556788888877631111356999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCc
Q 006891 129 FNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPT 208 (627)
Q Consensus 129 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~ 208 (627)
+..++..+.++++++.++..+++.+|++++++++++|.+.++...+.+.+..+++.+....+++..++++++++.+.+|.
T Consensus 129 ~~~~~~~~~l~~e~l~er~~l~~~ap~l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~ 208 (627)
T PLN02464 129 FQLDYGQLKLVFHALEERKQLIENAPHLCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPT 208 (627)
T ss_pred hCCCccceeehHHHHHHHHHHHhhChhhccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCC
Confidence 66777788889999999999999999999999999998888777778888888888765566666789999999999999
Q ss_pred cccccccC----CceEEEEecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CCCeEEEEEEEecCCCcEEEE
Q 006891 209 LAMKAKDR----SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDT 283 (627)
Q Consensus 209 l~~~~~~~----~~~g~~~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~-~g~~v~gV~~~d~~~g~~~~i 283 (627)
+ +.+ .+.+++.|.+|++||.+++..+++.|+++|++++++++|++|..++ +| ++++|++.|..+++...+
T Consensus 209 L----~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g-~v~gV~v~d~~tg~~~~i 283 (627)
T PLN02464 209 L----AKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTG-RIVGARVRDNLTGKEFDV 283 (627)
T ss_pred C----CccccccceeEEEEecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCC-cEEEEEEEECCCCcEEEE
Confidence 9 544 5788888999999999999999999999999999999999998864 46 899999987556665679
Q ss_pred EcCeEEeccCCChHHHhhhhcCCCCCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEecCCcEEEecCCCCCCC
Q 006891 284 YAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVI 363 (627)
Q Consensus 284 ~A~~VV~AtG~~s~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~~g~~~iG~t~~~~~~ 363 (627)
.||.||||+|+|++.|.++++....+.+.|.||.|++++....+...+++++.+.+|+.+|++||.|++++|+|+++.+.
T Consensus 284 ~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~hlvl~~~~~~~~~~~i~~~~~dgr~~~~~P~~g~~liGtTd~~~~~ 363 (627)
T PLN02464 284 YAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSKTPI 363 (627)
T ss_pred EeCEEEECCCHhHHHHHHhccCcCCCceEeeeeEEEecccccCCCCceEEecCCCCCCEEEEEecCCcEEEecCCCCCCC
Confidence 99999999999999999998755445699999999999876555555677776789999999999889999999988666
Q ss_pred CCCCCCCHHHHHHHHHHHhhhccc-CCCccceeeeeeeeeccccCCCCCCCCCCcccceeeecCCCeEEEecChhhhHHH
Q 006891 364 TLLPEPHEDEIQFILDAISDYLNV-KVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGKWTTYRS 442 (627)
Q Consensus 364 ~~~~~~~~~~~~~ll~~~~~~~~~-~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~~~gl~~~~Gg~~t~~~~ 442 (627)
+.++.++++++++|++.++++| | .+...+|+++|+|+||+++|+....+..++|+|+|....+|+++++||||||+|.
T Consensus 364 ~~~~~~t~~ei~~Ll~~a~~~~-~~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk~Tt~R~ 442 (627)
T PLN02464 364 TMLPEPHEDEIQFILDAISDYL-NVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVTITGGKWTTYRS 442 (627)
T ss_pred CCCCCCCHHHHHHHHHHHHHhh-CCCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEecCCCeEEEECChHHHHHH
Confidence 6688899999999999999999 6 7999999999999999998865456788899999988778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCcccccccCCCCCCcchHHHHHHHHhhhhhccCCCCCCCCCCHHHHHHHHHhhCCcHHH
Q 006891 443 MAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQ 522 (627)
Q Consensus 443 ~Ae~~~~~~~~~~~~~~~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~~~~ 522 (627)
|||+++|.+++.+.+.+..+|+|..+||+|+.+|.+....++.+++..++..+|++.....++.+.++||..+||+++..
T Consensus 443 mAe~~~d~~~~~~~l~~~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~a~~ 522 (627)
T PLN02464 443 MAEDAVDAAIKSGKLSPTNGCVTTDLPLVGAEGYEPSLFTQLAQQYVRMKRTYGGKVVPGAMDTAAAKHLAHAYGGRADR 522 (627)
T ss_pred HHHHHHHHHHHhcccCCCCCCCcCCcccCCCCccchhhHHHHHHHhhhhhhhccccccccCCCHHHHHHHHHhhchHHHH
Confidence 99999999998654556678999999999998877544445555543222233333333347999999999999999999
Q ss_pred HHHHHhccCCCCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHHHHH
Q 006891 523 VAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQE 602 (627)
Q Consensus 523 v~~~~~~~~~~~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~w~~~~~~~e 602 (627)
|+++++++.++.++|+|++|+++||+|||++||++++.|+|+||||++|++++++.+|+++|+++|+++|||+.+++++|
T Consensus 523 v~~~~~~~~~~~~~~~~~~~~~aEv~~ai~~e~a~~~~D~l~RRtrl~~~~~~~~~~~~~~v~~i~a~~l~w~~~~~~~e 602 (627)
T PLN02464 523 VAEIAQNEGLGKRLAHGYPFLEAEVAYCARHEYCESAVDFIARRTRLAFLDTDAAVRALPRVVEILAAEHGWDKSRKKQE 602 (627)
T ss_pred HHhhccccccccccccCCCcHHHHHHHHHHccCcCCHHHHHHHhccCcccChhHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99998777888999999999999999999999999999999999999999777899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccccCCCCC
Q 006891 603 LQKAKEFLETFKSSKNKQFHDGKHK 627 (627)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (627)
++++++++++|....+.+|+|++|+
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (627)
T PLN02464 603 LQKAKEFLETFKSSKNAQFNDGKHN 627 (627)
T ss_pred HHHHHHHHHHhhcccccccccccCC
Confidence 9999999999999999999999995
No 3
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.4e-82 Score=663.76 Aligned_cols=513 Identities=40% Similarity=0.599 Sum_probs=456.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||+||||||+|+.+|++|+.+|++|+|+|++|+++|||++|++++|||+||+++ .++.+++|++.|+..
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-------~e~~lvrEal~Er~v 82 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-------YEFSLVREALAEREV 82 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhh-------cchHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999986 478899999999999
Q ss_pred HHHHCCCCcccCCCccccCC-chhHHHHHHHHHHHHHhhc-CCCCCCccccCHHHHHhhCCccccccccCCceEEEEecC
Q 006891 149 VIRNAPHLSNALPCMTPCFD-WFEVVYYWVGLKMYDLVAG-RHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~g~~~~~~l~~-~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~ 226 (627)
+.+++||+++++++++|.+. +...+.+..|+.+|+.+.. ....|..+.++..+...++|.+ +.+.+.|++.|.|
T Consensus 83 L~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l----~~~~l~ga~~y~D 158 (532)
T COG0578 83 LLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPAL----KKDGLKGAFRYPD 158 (532)
T ss_pred HHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCccc----chhhccceEEEcc
Confidence 99999999999999999988 5677888899999999986 5566778899988999999999 7888999999999
Q ss_pred ceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
+++|+.+++..++..|.++|++++++++|+++.+++ | |+||.++|..||+..+|+|+.||||||+|+++++++++..
T Consensus 159 ~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~--v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~ 235 (532)
T COG0578 159 GVVDDARLVAANARDAAEHGAEILTYTRVESLRREG-G--VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE 235 (532)
T ss_pred ceechHHHHHHHHHHHHhcccchhhcceeeeeeecC-C--EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhccc
Confidence 999999999999999999999999999999999976 3 9999999988999999999999999999999999998755
Q ss_pred CC--CceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEecCCcEEEecCCCCCC-CCCCCCCCHHHHHHHHHHHhh
Q 006891 307 VQ--PMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISD 383 (627)
Q Consensus 307 ~~--~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~~g~~~iG~t~~~~~-~~~~~~~~~~~~~~ll~~~~~ 383 (627)
.. ..++|+||+|+|+++ ..+...+++++...|++.+|++||.+.++||+||.+++ +++++.++++|+++|++.++.
T Consensus 236 ~~~~~~vr~skGsHlVv~~-~~~~~~a~~~~~~~d~r~~f~iP~~~~~liGTTD~~~~~~~~~~~~~~eEidyll~~~~~ 314 (532)
T COG0578 236 QSPHIGVRPSKGSHLVVDK-KFPINQAVINRCRKDGRIVFAIPYEGKTLIGTTDTDYDGDPEDPRITEEEIDYLLDAVNR 314 (532)
T ss_pred CCCCccceeccceEEEecc-cCCCCceEEeecCCCCceEEEecCCCCEEeeccccccCCCcccCCCCHHHHHHHHHHHHh
Confidence 33 259999999999998 66666788887555999999999999999999999976 488999999999999999997
Q ss_pred hcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeecC--CCeEEEecChhhhHHHHHHHHHHHHHHcCCCCCCC
Q 006891 384 YLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSN 461 (627)
Q Consensus 384 ~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~~--~gl~~~~Gg~~t~~~~~Ae~~~~~~~~~~~~~~~~ 461 (627)
++.+.++..+|+++|+|+||+..|. .++++++||+|.|..+. +|+++++||||||||.|||+++|.+++.++. .+
T Consensus 315 ~~~~~l~~~dI~~syaGVRPL~~~~-~~~~~~isR~~~l~~~~~~~glltv~GGKlTTyR~maE~a~d~v~~~lg~--~~ 391 (532)
T COG0578 315 YLAPPLTREDILSTYAGVRPLVDDG-DDDTSAISRDHVLFDHAELAGLLTVAGGKLTTYRKMAEDALDAVCEKLGI--RP 391 (532)
T ss_pred hhhccCChhheeeeeeeeeeccCCC-CCchhhccCceEEEecCCCCCeEEEecchhHHhHHHHHHHHHHHHHhcCC--CC
Confidence 7778999999999999999998753 45799999999999877 8999999999999999999999999999664 38
Q ss_pred CCCcccccccCCCCCCcchHHHHHHHHhhhhhccCCCCCCCCCCHHHHHHHHHhhCCcHHHHHHHHhcc-CCCCccccCC
Q 006891 462 GCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNE-GLGKRLAHGY 540 (627)
Q Consensus 462 ~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~~~~v~~~~~~~-~~~~~~~~~~ 540 (627)
+|.|...||+|+++... +.+...+.. .....++...++||.+.||+++..||+.+... ++... ...
T Consensus 392 ~~~t~~~~LpGg~~~~~--~~~~~~~~~---------~~~~~l~~~~~r~l~~~YGs~~~~l~~~~~~~~~~~~~--~~~ 458 (532)
T COG0578 392 PCTTADLPLPGGDENAA--LAELAAALG---------AAYPGLPSALARHLARLYGSRAELLLALAAVLADLGEH--ALS 458 (532)
T ss_pred CcccCCCCCCCCCcchh--hHHHHHHhc---------cccCCCcHHHHHHHHHhhCcCHHHHHHHhhhccccccc--cCC
Confidence 99999999999873221 222222221 12234899999999999999999999987533 43332 367
Q ss_pred CccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 006891 541 PFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAKEFLETF 613 (627)
Q Consensus 541 ~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~w~~~~~~~e~~~~~~~~~~~ 613 (627)
+++++|++|++++||+.|+.|+|.|||+++|....+ ..|.++++++|+.+++|+.++..++.+++.+.+.++
T Consensus 459 ~~~~ael~y~~~~E~a~~~~D~l~RRt~~~l~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 530 (532)
T COG0578 459 DLYEAELRYLVRHEMALTLEDILARRTKLGLLLADV-LAAADAVAAVMAEELGWSAERPAAEGQALREALFTY 530 (532)
T ss_pred cchHHHHHHHHHhhhcCCHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHhh
Confidence 789999999999999999999999999999998877 899999999999999999999999999998888765
No 4
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=100.00 E-value=7e-69 Score=589.58 Aligned_cols=488 Identities=25% Similarity=0.326 Sum_probs=393.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
..+|||+|||||++|+++|++|+++|++|+||||+++++|+|++|+|++|+|++|... ....+.+.+.++..
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~--------~~~~~~~~~~e~~~ 75 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVT--------DAESARECISENQI 75 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhccc--------CHHHHHHHHHHHHH
Confidence 4469999999999999999999999999999999999999999999999999988642 23455666777766
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCce
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~ 228 (627)
+.+..++++.+.+.++......+..+. ...++... ..|++ .++++++++.+.+|.+ + +.+.+++.+.+|+
T Consensus 76 l~~~a~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~~-~~Gi~-~~~l~~~e~~~~eP~l----~-~~~~ga~~~~dg~ 145 (546)
T PRK11101 76 LKRIARHCVEPTDGLFITLPEDDLAFQ---ATFIRACE-EAGIE-AEAIDPQQALILEPAV----N-PALIGAVKVPDGT 145 (546)
T ss_pred HHHhchHhhcccCCceEEeccccHHHH---HHHHHHHH-HcCCC-cEEECHHHHHHhCCCc----C-ccceEEEEecCcE
Confidence 777777766554433322221111111 12223332 56775 7899999999999999 4 4467888777999
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~ 308 (627)
+||.+++.+++..|.++|++++++++|++|..++ + +|+||++.|..+++..+|+|+.||||||+|+++|.++.+.+
T Consensus 146 vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~-~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~-- 221 (546)
T PRK11101 146 VDPFRLTAANMLDAKEHGAQILTYHEVTGLIREG-D-TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR-- 221 (546)
T ss_pred ECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-C-eEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC--
Confidence 9999999999999999999999999999999876 5 89999998755666678999999999999999999988764
Q ss_pred CceecCcceEEEecCCCCCCCcceecc--cCCCCcEEEEEecCCcEEEecCCCCC--CCCCCCCCCHHHHHHHHHHHhhh
Q 006891 309 PMICPSSGVHIVLPDYYSPEGMGLIVP--KTKDGRVVFMLPWLGRTVAGTTDSDT--VITLLPEPHEDEIQFILDAISDY 384 (627)
Q Consensus 309 ~~i~p~kG~~lv~~~~~~~~~~~~~~~--~~~dg~~~~~~P~~g~~~iG~t~~~~--~~~~~~~~~~~~~~~ll~~~~~~ 384 (627)
.++.|.||+|++++.... ..++.+ .+.++. +++|+++.+++|+|+++. +++++..+++++++++++.+.++
T Consensus 222 ~~i~p~kG~~lv~~~~~~---~~vi~~~~~~~~~~--~~vp~~~~~liGtT~~~~~~~~~~~~~~t~~~i~~Ll~~~~~l 296 (546)
T PRK11101 222 IRMFPAKGSLLIMDHRIN---NHVINRCRKPADAD--ILVPGDTISLIGTTSTRIDYDQIDDNRVTAEEVDILLREGEKL 296 (546)
T ss_pred CceeecceEEEEECCccC---ceeEeccCCCCCCC--EEEecCCEEEEeeCCCCccCCCcCCCCCCHHHHHHHHHHHHHh
Confidence 569999999999976432 112221 123443 467988889999998764 34566889999999999999999
Q ss_pred cccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec-----CCCeEEEecChhhhHHHHHHHHHHHHHHcCCCCC
Q 006891 385 LNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNP 459 (627)
Q Consensus 385 ~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~-----~~gl~~~~Gg~~t~~~~~Ae~~~~~~~~~~~~~~ 459 (627)
+ |.+...+|+++|+|+||++.++...++.++||+|.|..+ .+||++++|||||++|+|||+++|+++++++ .
T Consensus 297 ~-P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGkltt~r~~Ae~v~d~v~~~l~--~ 373 (546)
T PRK11101 297 A-PVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLG--N 373 (546)
T ss_pred C-CCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECChHHHHHHHHHHHHHHHHHhcC--C
Confidence 9 899999999999999999753333457889999876542 3789999999999999999999999999854 4
Q ss_pred CCCCCcccccccCCCCCCcchHHHHHHHHhhhhhccCCCCCCCCCCHHHHHHHHHhhCCcHHHHHHHHhccCCCCccccC
Q 006891 460 SNGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHG 539 (627)
Q Consensus 460 ~~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~~~~v~~~~~~~~~~~~~~~~ 539 (627)
..+|+|+..||+|+..+... .....+. ++.+.++++..+||+++..|++... .....+|+|
T Consensus 374 ~~~~~t~~~~l~g~~~~~~~---~~~~~~~--------------~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lic~c 434 (546)
T PRK11101 374 TRPCTTADTPLPGSQEPAEV---TLRKVIS--------------LPAPLRGSAVYRHGDRAPAWLSEGR--LDRSLVCEC 434 (546)
T ss_pred CCCCcCCCcccCCccccchh---hHHHhcC--------------CCHHHHHHHHHhcCccHHHHHhhcc--CCCceecCC
Confidence 56899999999998754321 1111212 6888999999999999999986533 334579999
Q ss_pred CCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006891 540 YPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAK 607 (627)
Q Consensus 540 ~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~w~~~~~~~e~~~~~ 607 (627)
++|+++||+|||++|++.++.| |+||||+||+.| ||.+|.++++++|+++++|++++...+++++.
T Consensus 435 e~v~~aEv~~ai~~e~a~~l~d-l~RRtr~gmg~c-qg~~c~~~~~~~~~~~~~~~~~~~~~~l~~~~ 500 (546)
T PRK11101 435 EAVTAGEVRYAVENLNVNNLLD-LRRRTRVGMGTC-QGELCACRAAGLLQRFNVTTPAQSIEQLSTFL 500 (546)
T ss_pred CCccHHHHHHHHHhcCCCCHHH-HHHHHhCCcCcc-hhhHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 9999999999999999999999 999999999977 79999999999999999999999999988864
No 5
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-68 Score=579.86 Aligned_cols=491 Identities=32% Similarity=0.436 Sum_probs=390.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (627)
.+|||||||||++|+++|++|+++|++|+||||+++++|+|++|++++|+|++|+++ .++.++++++.++..+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~-------~~~~l~~e~l~er~~l 77 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH-------YEFRLVREALAEREVL 77 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh-------ccHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999875 3678899999999999
Q ss_pred HHHCCCCcccCCCccccCCch-hHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCce
Q 006891 150 IRNAPHLSNALPCMTPCFDWF-EVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (627)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~~~-~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~ 228 (627)
.+..|++++++++++|.+... ..+..+.|+.+|+.+.....++..+.+...... ..|.+ . +.+.+++.|.+++
T Consensus 78 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~-~~~~L----~-~~l~g~~~~~dg~ 151 (508)
T PRK12266 78 LRMAPHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDP-AGSPL----K-PEITRGFEYSDCW 151 (508)
T ss_pred HHhCCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcc-cCCCc----c-hhhcEEEEEcCcc
Confidence 999999999999988876532 222345667777766533333333333332211 12555 3 4467788899999
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhh-hcCCC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQNV 307 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~-~g~~~ 307 (627)
+||.+++..++..|.++|++++++++|+++..++ + .++|.+.+..+|+..+|+||.||||+|+|++.+.++ +|...
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~--~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~ 228 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARREN-G--LWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS 228 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-C--EEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCC
Confidence 9999999999999999999999999999998865 3 356777764566667899999999999999999775 46554
Q ss_pred CCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEec-CCcEEEecCCCCC-CCCCCCCCCHHHHHHHHHHHhhhc
Q 006891 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPW-LGRTVAGTTDSDT-VITLLPEPHEDEIQFILDAISDYL 385 (627)
Q Consensus 308 ~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~-~g~~~iG~t~~~~-~~~~~~~~~~~~~~~ll~~~~~~~ 385 (627)
..++.|.||+|++++..... ...++++ .+||+++|++|| +|++++|+|+.+. +++++..+++++++++++.++++|
T Consensus 229 ~~~i~p~kG~~lvl~~~~~~-~~~~~~~-~~dgr~v~~~P~~~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~ 306 (508)
T PRK12266 229 PYGIRLVKGSHIVVPRLFDH-DQAYILQ-NPDGRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYF 306 (508)
T ss_pred CcceeeeeeEEEEECCcCCC-CcEEEEe-CCCCCEEEEEEeCCCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 45799999999999864432 2233444 678999999999 5799999998764 355678899999999999999999
Q ss_pred ccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec----CCCeEEEecChhhhHHHHHHHHHHHHHHcCCCCCCC
Q 006891 386 NVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSN 461 (627)
Q Consensus 386 ~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~----~~gl~~~~Gg~~t~~~~~Ae~~~~~~~~~~~~~~~~ 461 (627)
++.++..+|++.|+|+||+++|+ .++++.++|+|+|..+ .+||++++|||||++|.|||+++|.+++.++ +..
T Consensus 307 p~~l~~~~ii~~waG~RPl~~d~-~~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk~Tt~r~mAe~~~~~~~~~l~--~~~ 383 (508)
T PRK12266 307 KKQLTPADVVWTYSGVRPLCDDE-SDSAQAITRDYTLELDDENGGAPLLSVFGGKITTYRKLAEHALEKLAPYLP--QMG 383 (508)
T ss_pred CCCCCHHHEEEEeeeeEeeCCCC-CCCcccCCcceEEEecccCCCCCeEEEEcChHHHHHHHHHHHHHHHHHhcC--CCC
Confidence 44799999999999999999875 3568889999999865 4689999999999999999999999999854 456
Q ss_pred CCCcccccccCCCCCCcchHHHHHHHHhhhhhccCCCCCCCCCCHHHHHHHHHhhCCcHHHHHHHHhcc-CCCCccccCC
Q 006891 462 GCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNE-GLGKRLAHGY 540 (627)
Q Consensus 462 ~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~~~~v~~~~~~~-~~~~~~~~~~ 540 (627)
+|+|+..||+|+..+.... ..+...... ..+.++.+.++||.++||+++..|++++++. ++...+ |+
T Consensus 384 ~~~t~~~~l~g~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~~~~~~~--~~ 451 (508)
T PRK12266 384 PAWTAGAPLPGGDFPGDRF-DALAAALRR---------RYPWLPEALARRLARAYGTRAERLLGGATSLADLGEHF--GH 451 (508)
T ss_pred CCCcCCcccCCCCCCcccH-HHHHHHHHH---------hcCCcCHHHHHHHHHhhhhHHHHHHHhcccchhhcccc--CC
Confidence 8999999999986432211 111111110 0112688999999999999999999987653 333333 66
Q ss_pred CccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCH
Q 006891 541 PFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDK 596 (627)
Q Consensus 541 ~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~w~~ 596 (627)
+++++||.|++++|||+|+.|+|.||||++|....++ .+.+..+.+.+++...
T Consensus 452 ~~~~aev~~~~~~e~a~~~~D~l~RRt~l~~~~~~~~---~~~~~~~~~~~~~~~~ 504 (508)
T PRK12266 452 GLYEAEVDYLVEHEWARTAEDILWRRTKLGLRLDAEQ---QARLEAWLAARRAAAA 504 (508)
T ss_pred CccHHHHHHHHHhhCCCCHHHHHHHhcccccccCHHH---HHHHHHHHHHhhcccc
Confidence 8999999999999999999999999999999754443 4555577777776544
No 6
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-67 Score=570.60 Aligned_cols=473 Identities=33% Similarity=0.450 Sum_probs=382.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.+|||+|||||++|+++|++|+++|++|+||||+++++|+|++|++++|+|++|+.. ..++++++++.++..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~-------~~~~l~~e~~~e~~~ 76 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEY-------YEFRLVREALIEREV 76 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHh-------ccHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999999999999864 367889999999999
Q ss_pred HHHHCCCCcccCCCccccCCc-hhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 149 VIRNAPHLSNALPCMTPCFDW-FEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
+.+..|+++.++++++|.... ......+.|..+|+.+.....++..+.++..+....+| + . +.+.+++.+.++
T Consensus 77 l~~~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~-l----~-~~~~~a~~~~dg 150 (502)
T PRK13369 77 LLAAAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAP-L----K-PEYTKGFEYSDC 150 (502)
T ss_pred HHHhCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCC-c----h-HhcCEEEEEcCe
Confidence 999999999988877775432 22334556778888775445566677777776655566 4 2 457788889999
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhh-hcCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-ADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~-~g~~ 306 (627)
++||.+++..++..|.++|++++++++|+++..++ ..++|.+.+.. |+..+++|+.||||+|+|+++|.++ +|..
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~---~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~ 226 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREG---GLWRVETRDAD-GETRTVRARALVNAAGPWVTDVIHRVAGSN 226 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC---CEEEEEEEeCC-CCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence 99999999999999999999999999999998865 34567777633 6667899999999999999999874 4654
Q ss_pred CCCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEecC-CcEEEecCCCCCC-CCCCCCCCHHHHHHHHHHHhhh
Q 006891 307 VQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTV-ITLLPEPHEDEIQFILDAISDY 384 (627)
Q Consensus 307 ~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~~-g~~~iG~t~~~~~-~~~~~~~~~~~~~~ll~~~~~~ 384 (627)
....+.|.||+|++++....+. ..++++ ..||+.+|++||. +.+++|+|+.+.+ ++++..++++++++|++.++++
T Consensus 227 ~~~~v~p~kG~~lv~~~~~~~~-~~~~~~-~~dgr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~ 304 (502)
T PRK13369 227 SSRNVRLVKGSHIVVPKFWDGA-QAYLFQ-NPDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRY 304 (502)
T ss_pred CCcceEEeeEEEEEeCCccCCC-ceEEEe-CCCCeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHh
Confidence 3356999999999997544322 223444 5789999999996 6789999997743 5568889999999999999999
Q ss_pred cccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec----CCCeEEEecChhhhHHHHHHHHHHHHHHcCCCCCC
Q 006891 385 LNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPS 460 (627)
Q Consensus 385 ~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~----~~gl~~~~Gg~~t~~~~~Ae~~~~~~~~~~~~~~~ 460 (627)
|++.++..+|++.|+|+||+++|+ .++++.++|+|.|..+ .+|+++++|||||++|+|||+++|++++.++ ..
T Consensus 305 ~~~~l~~~~i~~~waGlRPl~~d~-~~~~~~~sR~~~i~~~~~~g~~gli~i~Ggk~Tt~r~~Ae~v~d~~~~~l~--~~ 381 (502)
T PRK13369 305 FKEKLRREDVVHSFSGVRPLFDDG-AGNPSAVTRDYVFDLDAETGGAPLLSVFGGKITTFRKLAEHALERLKPFFP--QM 381 (502)
T ss_pred hCCCCCHhHEEEEeeceEEcCCCC-CCCcccCCcceEEeeccccCCCCeEEEeCChHhhHHHHHHHHHHHHHHhcC--CC
Confidence 944899999999999999999875 3567888999999865 3689999999999999999999999999854 45
Q ss_pred CCCCcccccccCCCCCCcchHHHHHHHHhhhhhccCCCCCCCCCCHHHHHHHHHhhCCcHHHHHHHHhccCCCCccccC-
Q 006891 461 NGCLTQNLRLVGGDGWDPSSFTVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHG- 539 (627)
Q Consensus 461 ~~~~t~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~~~~v~~~~~~~~~~~~~~~~- 539 (627)
.+|+|+..||+|+..+... ...+..++.. ....++.+.++||.++||++|..|++++++.. .++.|
T Consensus 382 ~~~~t~~~~l~g~~~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~l~~~yG~~a~~v~~~~~~~~---~~~~~~ 448 (502)
T PRK13369 382 GGDWTAGAPLPGGDIANAD-FDTFADDLRD---------RYPWLPRPLAHRYARLYGTRAKDVLGGARSLE---DLGRHF 448 (502)
T ss_pred CCCCCCCcccCCcCCCccC-HHHHHHHHHh---------hcCCCCHHHHHHHHHhhhhHHHHHHHhcccch---hhhccc
Confidence 6899999999998643221 1122111110 01127889999999999999999998875432 24444
Q ss_pred -CCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHH
Q 006891 540 -YPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDA 576 (627)
Q Consensus 540 -~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~ 576 (627)
++++++||.|+|++|||+|+.|+|.||||++|....+
T Consensus 449 ~~~~~~aev~~~~~~e~a~~~~D~l~RRt~l~~~~~~~ 486 (502)
T PRK13369 449 GGGLTEAEVRYLVAREWARTAEDILWRRTKLGLHLSAA 486 (502)
T ss_pred CCCccHHHHHHHHHhhcCCCHHHHHHHhhhcccccCHH
Confidence 5899999999999999999999999999999974433
No 7
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=100.00 E-value=3.6e-64 Score=551.88 Aligned_cols=473 Identities=24% Similarity=0.300 Sum_probs=384.4
Q ss_pred HHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHCCCCcccCCCcccc
Q 006891 87 ALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPC 166 (627)
Q Consensus 87 A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 166 (627)
|++|+++|++|+||||+++++|+|++|+|++|+|++|... ....+.+++.++..+.+..++.+.+.+.++..
T Consensus 1 ArdLa~rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~--------~~~~a~~~~~~~~~l~~~a~~~~~~~g~L~va 72 (516)
T TIGR03377 1 MRDLALRGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVT--------DQESARECIEENRILKRIARHCVEDTGGLFIT 72 (516)
T ss_pred ChhHHHCCCCEEEEeCCCcccccccccccCcCcchhhhcc--------CHHHHHHHHHHHHHHHHhChHhccCCCceEEe
Confidence 6899999999999999999999999999999999988653 34456677777777777788777766654433
Q ss_pred CCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceechHHHHHHHHHHHHHcC
Q 006891 167 FDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVGLALTAALAG 246 (627)
Q Consensus 167 ~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~~~~l~~~l~~~a~~~G 246 (627)
....+..+.. ..+... ...|++ .++++++++.+.+|.+ + ..+.+++.+.+|++||.+++.++++.|.++|
T Consensus 73 ~~~~~~~~~~---~~~~~~-~~~gi~-~~~l~~~e~~~~~P~l----~-~~~~ga~~~~dg~vdp~~l~~al~~~A~~~G 142 (516)
T TIGR03377 73 LPEDDLEFQK---QFLAAC-REAGIP-AEEIDPAEALRLEPNL----N-PDLIGAVKVPDGTVDPFRLVAANVLDAQEHG 142 (516)
T ss_pred cCcccHHHHH---HHHHHH-HHCCCC-ceEECHHHHHHHCCCC----C-hhheEEEEeCCcEECHHHHHHHHHHHHHHcC
Confidence 2221211111 122222 256776 7899999999999998 4 3467788777999999999999999999999
Q ss_pred CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCCCceecCcceEEEecCCCC
Q 006891 247 AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS 326 (627)
Q Consensus 247 v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~ 326 (627)
++|+++++|++|..++ + +++||++.|..+|+..+|+|+.||||||+|++.|.+++|.+ .++.|.||+|++++....
T Consensus 143 a~i~~~t~V~~i~~~~-~-~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~~~~~~ 218 (516)
T TIGR03377 143 ARIFTYTKVTGLIREG-G-RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD--IRMFPAKGALLIMNHRIN 218 (516)
T ss_pred CEEEcCcEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC--CceecceEEEEEECCccc
Confidence 9999999999999866 5 89999997755676678999999999999999999998874 579999999999975432
Q ss_pred CCCcceecccCCCCcEEEEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHhhhcccCCCccceeeeeeeeecccc
Q 006891 327 PEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAM 406 (627)
Q Consensus 327 ~~~~~~~~~~~~dg~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~ 406 (627)
+.....+ +.+.++. |++|+++.+++|+|+++.+++++..+++++++++++.+.++| |.+...+|+++|+|+||+..
T Consensus 219 ~~~~~~~-~~~~~g~--~~~P~~~~~liGtT~~~~~~~~~~~~~~~~v~~ll~~~~~~~-P~l~~~~i~~~~aGvRPl~~ 294 (516)
T TIGR03377 219 NTVINRC-RKPSDAD--ILVPGDTISIIGTTSERIDDPDDLPVTQEEVDVLLREGAKLA-PMLAQTRILRAFAGVRPLVA 294 (516)
T ss_pred ccccccc-cCCCCCc--EEEECCCeEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhC-cccccCCEEEEEeecccccC
Confidence 2111111 1134554 578998999999999876666778899999999999999999 89999999999999999986
Q ss_pred CCCCCCCCCCcccceeeec-----CCCeEEEecChhhhHHHHHHHHHHHHHHcCCCCCCCCCCcccccccCCCCCCcchH
Q 006891 407 DPSAKNTESISRDHVVCED-----FPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLNPSNGCLTQNLRLVGGDGWDPSSF 481 (627)
Q Consensus 407 d~~~~~~~~~~r~~~i~~~-----~~gl~~~~Gg~~t~~~~~Ae~~~~~~~~~~~~~~~~~~~t~~~~l~g~~~~~~~~~ 481 (627)
++...+..+++|+|.|..+ .+|+++++|||||++|+|||+++|+++++++ ...+|+|+..||+|+.++.+ .
T Consensus 295 ~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGkltt~r~~Ae~~~d~~~~~l~--~~~~~~t~~~~l~~~~~~~~--~ 370 (516)
T TIGR03377 295 VDDDPSGRNISRGIVLLDHAERDGLPGFITITGGKLTTYRLMAEWATDVVCKKLG--NDRPCRTADEPLPGSEDPTA--V 370 (516)
T ss_pred CCCCCCccccCCCeEEeecccccCCCCeEEEecchHHHHHHHHHHHHHHHHHHcC--CCCCCCCCCccccCccchHH--H
Confidence 5433446788999977542 3789999999999999999999999999854 45689999999999876532 2
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCHHHHHHHHHhhCCcHHHHHHHHhccCCCCccccCCCccHHHHHHHHHhcCCCChhH
Q 006891 482 TVLAQQYVRMKRTYGGKFVPGVMDTAVAKHLSHAYGIMAEQVAIIAQNEGLGKRLAHGYPFLEAEVAYCARNEYCESAVD 561 (627)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~yG~~~~~v~~~~~~~~~~~~~~~~~~~~~aei~~a~~~e~~~~~~D 561 (627)
..+...+. ++.+.++++..+||+++..|++.. +...+.+|+|++|+++||+|||++|++.++.|
T Consensus 371 ~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~ic~ce~v~~~Ei~~ai~~~~a~~l~d 434 (516)
T TIGR03377 371 KTLKKLIS--------------LPSPIAGSAVYRHGERAPQVLKDN--RLDNQVICECEMVTAGEVEYAIRELDVNNLVD 434 (516)
T ss_pred HHHHHHhC--------------CCHHHHHHHHHhhCccHHHHHhcc--cCCCCcCCCCccccHHHHHHHHHhcCCCCHHH
Confidence 22322222 788899999999999999988643 24458899999999999999999999999999
Q ss_pred HHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006891 562 FVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRRKQELQKAK 607 (627)
Q Consensus 562 ~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~w~~~~~~~e~~~~~ 607 (627)
|+||||+||+.| ||.+|.++++++|+++++|+.++...+++++.
T Consensus 435 -l~RRtr~gmg~c-qg~~c~~~~~~~~~~~~~~~~~~~~~~l~~f~ 478 (516)
T TIGR03377 435 -LRRRTRLGMGTC-QGEFCAYRAAGLLSREGLIDPEQSTELLREFL 478 (516)
T ss_pred -HHHHHhcCcCcc-ccchHHHHHHHHHHHhhCCChhhhHHHHHHHH
Confidence 999999999977 79999999999999999999999998887754
No 8
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=2.5e-33 Score=298.38 Aligned_cols=347 Identities=19% Similarity=0.217 Sum_probs=242.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCC-CCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 71 PLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~-~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
.+||+||||||+|+++|++|+++ |++|+||||+. ++.++|++|+|++|+++.+..... ...+..+......
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~------~~~l~~~~~~~~~ 75 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSL------KARFCRRGNEATK 75 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHH------HHHHHHHHHHHHH
Confidence 38999999999999999999999 99999999985 789999999999998864432110 1122222222222
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
.+........+..+.++......+...+ ...++... ..+++ .++++.+++.+.+|.+ . ...+.+.+.+|
T Consensus 76 ~~~~~~~~~~~~~G~l~~~~~~~~~~~l---~~~~~~~~-~~g~~-~~~l~~~el~~~~P~l----~--~~~al~~p~~g 144 (393)
T PRK11728 76 AFCDQHGIPYEECGKLLVATSELELERM---EALYERAR-ANGIE-VERLDAEELREREPNI----R--GLGAIFVPSTG 144 (393)
T ss_pred HHHHHcCCCcccCCEEEEEcCHHHHHHH---HHHHHHHH-HCCCc-EEEeCHHHHHHhCCCc----c--ccceEEcCCce
Confidence 2222111111122222222221111111 12223332 45665 8899999999999988 3 34455667799
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
++++..++..|.+.++++|++++++++|+++..+++ .+ .|.+ .++ ++.||.||+|+|.|+..+++++|.+.
T Consensus 145 ~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~--~~-~V~~---~~g---~i~ad~vV~A~G~~s~~l~~~~g~~~ 215 (393)
T PRK11728 145 IVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHAN--GV-VVRT---TQG---EYEARTLINCAGLMSDRLAKMAGLEP 215 (393)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC--eE-EEEE---CCC---EEEeCEEEECCCcchHHHHHHhCCCC
Confidence 999999999999999999999999999999987653 33 3433 122 68999999999999999999988765
Q ss_pred CCceecCcceEEEecCCCCCCCcceecccCCC---CcEEEEEec-CCcEEEecCCCCCC--CCCCCC-C-----------
Q 006891 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW-LGRTVAGTTDSDTV--ITLLPE-P----------- 369 (627)
Q Consensus 308 ~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~d---g~~~~~~P~-~g~~~iG~t~~~~~--~~~~~~-~----------- 369 (627)
+.++.|.||+++.+.....+....++++.+.. ...+|+.|. +|++++|++..... ...+.. .
T Consensus 216 ~~~v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (393)
T PRK11728 216 DFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTY 295 (393)
T ss_pred CCceEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHhc
Confidence 56799999999998754322223445542211 235788996 67899998554322 111211 1
Q ss_pred ----------CHHHHHHH---------HHHHhhhcccCCCccceeeeeeeeec--cccCCCCCCCCCCcccceeeecCCC
Q 006891 370 ----------HEDEIQFI---------LDAISDYLNVKVRRTDVLSAWSGIRP--LAMDPSAKNTESISRDHVVCEDFPG 428 (627)
Q Consensus 370 ----------~~~~~~~l---------l~~~~~~~~~~l~~~~i~~~~aG~Rp--~~~d~~~~~~~~~~r~~~i~~~~~g 428 (627)
+.+.++++ ++.+.+++ |.|...+++..|+|+|| .++|+ ....||+|... ++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-P~l~~~~i~~~~~G~Rp~~~~~d~------~~~~d~~i~~~-~~ 367 (393)
T PRK11728 296 PGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYC-PSLTLSDLQPYPAGVRAQAVSRDG------KLVDDFLFVET-PR 367 (393)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhC-CCCCHHHcccCCCceeeeeeCCCC------CccCceEEecC-CC
Confidence 45566666 58999999 99999999999999999 76663 22357877644 78
Q ss_pred eEEEecCh---hhhHHHHHHHHHHHH
Q 006891 429 LVTITGGK---WTTYRSMAEDAVNAA 451 (627)
Q Consensus 429 l~~~~Gg~---~t~~~~~Ae~~~~~~ 451 (627)
++++.|+. +|.+++||++|++++
T Consensus 368 ~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 368 SLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred EEEEcCCCCchHHccHHHHHHHHhhC
Confidence 99999985 999999999999863
No 9
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=2e-32 Score=283.33 Aligned_cols=358 Identities=22% Similarity=0.245 Sum_probs=261.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC--CeEEEEcCC-CCCCCCcCCCCCcccchhhhhhhhhccCCcchHHH-HHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATRG--LRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL-VFHALEE 145 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G--~~V~lvEk~-~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~-~~~~l~~ 145 (627)
.+||||||||||+|+++|++|++++ ++|+||||. +++.++|++|++.+|.|+.|....+. ..+.. ..+.+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slk----a~l~~~g~~~~-- 75 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLK----AKLCVAGNINE-- 75 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchh----hHHHHHHHHHH--
Confidence 4699999999999999999999998 999999998 58999999999999999877543110 01100 00011
Q ss_pred HHHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEec
Q 006891 146 RKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY 225 (627)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~ 225 (627)
.....+..-.+.+. +.+.-.....+..++. ++|+.+. .++++..+.++++++.+++|.+ ......+.+.+.
T Consensus 76 ~~~~kq~~~~f~~~-g~l~vA~~e~e~~~L~---~l~~~~~-~ngv~~~~~ld~~~i~~~eP~l----~~~~~aal~~p~ 146 (429)
T COG0579 76 FAICKQLGIPFINC-GKLSVATGEEEVERLE---KLYERGK-ANGVFDLEILDKEEIKELEPLL----NEGAVAALLVPS 146 (429)
T ss_pred HHHHHHhCCccccc-CeEEEEEChHHHHHHH---HHHHHHh-hCCCcceeecCHHHHHhhCccc----cccceeeEEcCC
Confidence 00001111111222 2233333333333332 3444443 6777778999999999999999 544555566788
Q ss_pred CceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcC
Q 006891 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~ 305 (627)
.+.+|+..++.+|++.++++|++++++++|++|.++++| ++-+.+ .+|+.. ++||.||||+|.+++.|+++.|.
T Consensus 147 ~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg--~~~~~~---~~g~~~-~~ak~Vin~AGl~Ad~la~~~g~ 220 (429)
T COG0579 147 GGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG--VFVLNT---SNGEET-LEAKFVINAAGLYADPLAQMAGI 220 (429)
T ss_pred CceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc--eEEEEe---cCCcEE-EEeeEEEECCchhHHHHHHHhCC
Confidence 999999999999999999999999999999999998864 332333 455533 99999999999999999999998
Q ss_pred CCCCceecCcceEEEecCCCCCCCcceecccCCC---CcEEEEEec-CCcEEEecCCCCCC--CCCCCCCCHHHHHHHHH
Q 006891 306 NVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW-LGRTVAGTTDSDTV--ITLLPEPHEDEIQFILD 379 (627)
Q Consensus 306 ~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~d---g~~~~~~P~-~g~~~iG~t~~~~~--~~~~~~~~~~~~~~ll~ 379 (627)
+....+.|++|++++++..........+++.+.. +..+.+.|. +|++++|++....+ ...+...+.+..+.+..
T Consensus 221 ~~~~~~~P~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~ 300 (429)
T COG0579 221 PEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRK 300 (429)
T ss_pred CcccccCccceEEEEEcccccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhhccccccccchhhhHHH
Confidence 8667899999999999875555456667764333 355666774 68999999987652 22346677888888888
Q ss_pred HHhhhcccCCC-ccceeeeeeeeeccccCCCCCCCCCCcccceeee--cCCCeEEEecCh---hhhHHHHHHHHHHHHHH
Q 006891 380 AISDYLNVKVR-RTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE--DFPGLVTITGGK---WTTYRSMAEDAVNAAIK 453 (627)
Q Consensus 380 ~~~~~~~~~l~-~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~--~~~gl~~~~Gg~---~t~~~~~Ae~~~~~~~~ 453 (627)
...+.+ +.+. .......++|.||...++. .-..+++|-. +.+++++++|.+ +|.++++|+.++.++.+
T Consensus 301 ~~~~~~-~~~~~~~~~~~~y~~~r~~~~~~~-----~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~ 374 (429)
T COG0579 301 ANSRGM-PDLGIKNNVLANYAGIRPILKEPR-----LPALDFIIPEAKDEDWFINVAGIRSQGLTADPAIAGGVLELLTE 374 (429)
T ss_pred hhhhhc-ccccccccchhhhheecccccccc-----ccccceecccccCCCCceeeeeEEccccccChhHhhhHhhhccc
Confidence 888888 7776 5678899999999763311 1114666653 346888999986 99999999999998876
Q ss_pred c
Q 006891 454 S 454 (627)
Q Consensus 454 ~ 454 (627)
.
T Consensus 375 ~ 375 (429)
T COG0579 375 R 375 (429)
T ss_pred c
Confidence 5
No 10
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=100.00 E-value=2.9e-32 Score=286.77 Aligned_cols=340 Identities=26% Similarity=0.350 Sum_probs=241.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHHHHH
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRN 152 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (627)
||+||||||+|+++|++|+++|++|+|||++++++++|+++.++++++..... +....++..+.+.....+...
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~ 74 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYP------DPQYARLARESVEFWRELAEE 74 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHS------SHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccc------cccccchhhhhccchhhhhhh
Confidence 89999999999999999999999999999999999999999999988741110 111233444444444444333
Q ss_pred CCCCc--ccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEE-EEecCcee
Q 006891 153 APHLS--NALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGA-VVYYDGQM 229 (627)
Q Consensus 153 ~~~~~--~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~-~~~~~g~~ 229 (627)
.+.-. ...+.+............ ....+.+. ..++ ..++++.+++.+.+|.+ . .....+ +.+.++++
T Consensus 75 ~~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~~~~~~~~p~~----~-~~~~~~~~~~~~g~i 144 (358)
T PF01266_consen 75 YGIPVGFRPCGSLYLAEDEEDAESL---ERLLDRLR-RNGI-PYELLSPEELRELFPFL----N-PRIEGGVFFPEGGVI 144 (358)
T ss_dssp TTSSCEEEECEEEEEESSHHHHHHH---HHHHHHHH-HTTT-TEEEEEHHHHHHHSTTS----S-TTTEEEEEETTEEEE
T ss_pred cCcccccccccccccccchhhhhhc---cccccccc-cccc-cccccchhhhhhhhccc----c-cchhhhhcccccccc
Confidence 33211 122222222221111111 12233332 4555 48999999999999998 5 444444 55667889
Q ss_pred chHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCCC
Q 006891 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP 309 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~~ 309 (627)
++.+++..|.+.+++.|++|+++++|++|..++ + ++.||.+.+ .+++||.||+|+|+|+..|.++++...
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~-~v~gv~~~~------g~i~ad~vV~a~G~~s~~l~~~~~~~~-- 214 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-G-RVTGVRTSD------GEIRADRVVLAAGAWSPQLLPLLGLDL-- 214 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-T-EEEEEEETT------EEEEECEEEE--GGGHHHHHHTTTTSS--
T ss_pred cccchhhhhHHHHHHhhhhccccccccchhhcc-c-ccccccccc------cccccceeEecccccceeeeecccccc--
Confidence 999999999999999999999999999999987 4 788887732 259999999999999999999887653
Q ss_pred ceecCcceEEEecCCCCCCCcceeccc--CCCCcEEEEEecCCcEEEecCCCCCCCCCC--------CCCCHHHHHHHHH
Q 006891 310 MICPSSGVHIVLPDYYSPEGMGLIVPK--TKDGRVVFMLPWLGRTVAGTTDSDTVITLL--------PEPHEDEIQFILD 379 (627)
Q Consensus 310 ~i~p~kG~~lv~~~~~~~~~~~~~~~~--~~dg~~~~~~P~~g~~~iG~t~~~~~~~~~--------~~~~~~~~~~ll~ 379 (627)
++.|.+|+++.++.........+.... ..+...+|++|+.|.+++|+++........ ...+++ ++.+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 293 (358)
T PF01266_consen 215 PLRPVRGQVLVLEPPESPLAPAILFPPVIFGPSDGVYIRPRPGGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLE 293 (358)
T ss_dssp TEEEEEEEEEEEEGCCSGSSSEEEEEEECESSCTEEEEEEETTEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHH
T ss_pred cccccceEEEEEccCCcccccccccccccccccccceecccccccccccccccccccccccccccccccccHH-HHHhHH
Confidence 689999999988754333322222221 123467899998899999965532211001 011223 678999
Q ss_pred HHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec--CCCeEEEecCh---hhhHHHHHHHHHHH
Q 006891 380 AISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGGK---WTTYRSMAEDAVNA 450 (627)
Q Consensus 380 ~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~--~~gl~~~~Gg~---~t~~~~~Ae~~~~~ 450 (627)
.+.+++ |.+...++.+.|+|+||.++| +.|+|... .+|++.++|.. ++.++.+|+.++|+
T Consensus 294 ~~~~~~-p~l~~~~v~~~~~g~r~~t~d----------~~p~ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 294 RLARLL-PGLGDAEVVRSWAGIRPFTPD----------GRPIIGELPGSPNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp HHHHHS-GGGGGSEEEEEEEEEEEEETT----------SECEEEEESSEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhhhccccccccceeeeccC----------CCeeeeecCCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 999999 899999999999999999988 46888764 46899887753 99999999999875
No 11
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=1.4e-30 Score=279.06 Aligned_cols=343 Identities=17% Similarity=0.240 Sum_probs=239.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-CC-eEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR-GL-RVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~-G~-~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (627)
...+||+|||||++|+++||+|+++ |. +|+||||+.+++|+|++|+++++.++.+.. ...+...+...+
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~---------~~~~~~~s~~l~ 98 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPE---------SAELYEHAMKLW 98 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCcc---------ccHHHHHHHHHH
Confidence 4569999999999999999999996 95 999999999999999999999986653321 111112222222
Q ss_pred HHHHHHC--CCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccC-----Cce
Q 006891 147 KQVIRNA--PHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR-----SLK 219 (627)
Q Consensus 147 ~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~-----~~~ 219 (627)
..+.+.. ....+..+.+.......+.... ...+..+ ...|++ .++++++++.+.+|.+ +.+ ...
T Consensus 99 ~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l---~~~~~~~-~~~g~~-~~~l~~~el~~~~P~l----~~~~~~~~~~~ 169 (407)
T TIGR01373 99 EGLSQDLNYNVMFSQRGVLNLCHSTADMDDG---ARRVNAM-RLNGVD-AELLSPEQVRRVIPIL----DFSPDARFPVV 169 (407)
T ss_pred HHHHHHhCCCcCEEeccEEEEeCCHHHHHHH---HHHHHHH-HHcCCC-eEEeCHHHHHHhCCCC----cccccccccee
Confidence 2221111 1111222222222221111111 1222222 245775 7899999999999998 432 234
Q ss_pred EEE-EecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 220 GAV-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 220 g~~-~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
+++ .+.+|.++|..++..+++.+.++|++++.+++|+++..++++ ++++|.+. +| .+.|+.||+|+|+|+..
T Consensus 170 ga~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~~~v~t~---~g---~i~a~~vVvaagg~~~~ 242 (407)
T TIGR01373 170 GGLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGG-RVIGVETT---RG---FIGAKKVGVAVAGHSSV 242 (407)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCC-cEEEEEeC---Cc---eEECCEEEECCChhhHH
Confidence 444 456889999999999999999999999999999999865445 67667552 23 68999999999999999
Q ss_pred HhhhhcCCCCCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEecC-CcEEEecCCCCCCCCCCCCCCHHHHHHH
Q 006891 299 VRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFI 377 (627)
Q Consensus 299 l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~~-g~~~iG~t~~~~~~~~~~~~~~~~~~~l 377 (627)
+.++++.. .++.+.+++.++.+.. .+....++.. . ...+|+.|.. |.+++|.+.+..+ ..+...+.+.++.+
T Consensus 243 l~~~~g~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~~y~~p~~~g~~~ig~~~~~~~-~~~~~~~~~~~~~l 315 (407)
T TIGR01373 243 VAAMAGFR--LPIESHPLQALVSEPL-KPIIDTVVMS--N-AVHFYVSQSDKGELVIGGGIDGYN-SYAQRGNLPTLEHV 315 (407)
T ss_pred HHHHcCCC--CCcCcccceEEEecCC-CCCcCCeEEe--C-CCceEEEEcCCceEEEecCCCCCC-ccCcCCCHHHHHHH
Confidence 98888765 3577888887765432 1111122221 2 2346888864 6788987653221 12333467788999
Q ss_pred HHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec-CCCeEEEecC---hhhhHHHHHHHHHHHHHH
Q 006891 378 LDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVTITGG---KWTTYRSMAEDAVNAAIK 453 (627)
Q Consensus 378 l~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~-~~gl~~~~Gg---~~t~~~~~Ae~~~~~~~~ 453 (627)
++.+.++| |.+....+.+.|+|+||.++| ..|+|+.. .+|++.++|. +++++|.+|+.+++++.+
T Consensus 316 ~~~~~~~~-P~l~~~~~~~~w~G~~~~t~D----------~~PiIg~~~~~gl~~a~G~~g~G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 316 LAAILEMF-PILSRVRMLRSWGGIVDVTPD----------GSPIIGKTPLPNLYLNCGWGTGGFKATPASGTVFAHTLAR 384 (407)
T ss_pred HHHHHHhC-CCcCCCCeEEEeccccccCCC----------CCceeCCCCCCCeEEEeccCCcchhhchHHHHHHHHHHhC
Confidence 99999999 888888899999999999999 47888875 4799999884 399999999999999875
Q ss_pred c
Q 006891 454 S 454 (627)
Q Consensus 454 ~ 454 (627)
.
T Consensus 385 ~ 385 (407)
T TIGR01373 385 G 385 (407)
T ss_pred C
Confidence 4
No 12
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=100.00 E-value=2e-30 Score=277.96 Aligned_cols=354 Identities=18% Similarity=0.169 Sum_probs=229.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC-CCCCCcCCCCCcccchhhh--------------hhhhhc------c
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRY--------------LEKAVF------N 130 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~-~~~g~S~~~~~~i~~g~~~--------------~~~~~~------~ 130 (627)
+||+|||||++|+++|++|+++|.+|+||||++ ++.|+|++|+|++++.... ...... .
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPK 81 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecCC
Confidence 599999999999999999999999999999997 7899999999998753311 000000 0
Q ss_pred CCcch---------------------HHHHHHHHHHHHHHHHHCCC--CcccCCCccccCCchhHHHHHHHHHHHHHhhc
Q 006891 131 LDYGQ---------------------LKLVFHALEERKQVIRNAPH--LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAG 187 (627)
Q Consensus 131 ~~~~~---------------------~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~ 187 (627)
+.... .++..+.......+.+.... ....-+.+.......+.... ...++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l---~~~~~~~~- 157 (410)
T PRK12409 82 PSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHA---KRVNALLA- 157 (410)
T ss_pred CCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHHhc---cHHHHHHH-
Confidence 00000 01111111111111111110 01111222222221111111 11222232
Q ss_pred CCCCCCccccCHHHHHhhCCccccccccCCceEE-EEecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCe
Q 006891 188 RHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGA-VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNR 266 (627)
Q Consensus 188 ~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~-~~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~ 266 (627)
..+++ .++++++++.+.+|.+ .. .+.++ +.+.++++++..++..+.+.+++.|++++++++|+++..++ + .
T Consensus 158 ~~g~~-~~~l~~~e~~~~~P~l----~~-~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~-~ 229 (410)
T PRK12409 158 EGGLE-RRAVTPEEMRAIEPTL----TG-EYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG-G-G 229 (410)
T ss_pred hcCCC-eEEcCHHHHHHhCCCC----cc-ccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-C-E
Confidence 45664 7899999999999998 43 34445 44568899999999999999999999999999999998765 3 4
Q ss_pred EEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCCCceecCcceEEEecCCCC--CCCcceecccCCCCcEEE
Q 006891 267 IIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYS--PEGMGLIVPKTKDGRVVF 344 (627)
Q Consensus 267 v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~--~~~~~~~~~~~~dg~~~~ 344 (627)
++ +.+.+...++..+++|+.||+|+|+|+..+.++++.. .++.|.+|++++++.... +...+.+.....+....+
T Consensus 230 ~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~--~~i~p~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 306 (410)
T PRK12409 230 VV-LTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR--VNVYPVKGYSITVNLDDEASRAAAPWVSLLDDSAKIVT 306 (410)
T ss_pred EE-EEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC--CccccCCceEEEeecCCccccccCCceeeeecCCcEEE
Confidence 43 4443311100246899999999999999998887654 468999999887642211 111121111112222222
Q ss_pred EEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeee
Q 006891 345 MLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE 424 (627)
Q Consensus 345 ~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~ 424 (627)
..+..+++++|++.+.. ..+..++.+.++.+++.+.++| |.+....+. .|+|+||+++| +.|+|+.
T Consensus 307 ~~~~~~~~~igg~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~-~w~G~r~~t~D----------~~PiiG~ 372 (410)
T PRK12409 307 SRLGADRFRVAGTAEFN--GYNRDIRADRIRPLVDWVRRNF-PDVSTRRVV-PWAGLRPMMPN----------MMPRVGR 372 (410)
T ss_pred EecCCCcEEEEEEEEec--CCCCCCCHHHHHHHHHHHHHhC-CCCCccccc-eecccCCCCCC----------CCCeeCC
Confidence 12234677788776542 2344567788999999999999 888776665 79999999998 4788886
Q ss_pred c-CCCeEEEecC---hhhhHHHHHHHHHHHHHHc
Q 006891 425 D-FPGLVTITGG---KWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 425 ~-~~gl~~~~Gg---~~t~~~~~Ae~~~~~~~~~ 454 (627)
. .+|+|.++|. ++|++|.+|+.+++++.+.
T Consensus 373 ~~~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~~~ 406 (410)
T PRK12409 373 GRRPGVFYNTGHGHLGWTLSAATADLVAQVVAQK 406 (410)
T ss_pred CCCCCEEEecCCcccchhhcccHHHHHHHHHcCC
Confidence 4 4799998874 4999999999999998754
No 13
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.98 E-value=1.1e-29 Score=273.21 Aligned_cols=348 Identities=17% Similarity=0.140 Sum_probs=232.7
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC-CCCCCCcCCCCCcccchhhhhhh-------hh---c----------cC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEK-------AV---F----------NL 131 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~-~~~~g~S~~~~~~i~~g~~~~~~-------~~---~----------~~ 131 (627)
||+|||||++|+++|++|+++|.+|+|+|+. .++.++|++|+|++|+++.+... .+ . ..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDG 81 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCCC
Confidence 7999999999999999999999999999998 47899999999999988643210 00 0 00
Q ss_pred CcchH-----------------------HHHHHHHHHHHHHHHHCC-C-CcccCCCccccCCchhHHHHHHHHHHHHHhh
Q 006891 132 DYGQL-----------------------KLVFHALEERKQVIRNAP-H-LSNALPCMTPCFDWFEVVYYWVGLKMYDLVA 186 (627)
Q Consensus 132 ~~~~~-----------------------~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~ 186 (627)
..... .+.....+....+.+... . ..+..+.+....+..+.... .+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l---~~~~~~~- 157 (416)
T PRK00711 82 DPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAA---AKDIAVL- 157 (416)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHHHHH---HHHHHHH-
Confidence 00000 001111111111111100 0 01111111111111111111 1122223
Q ss_pred cCCCCCCccccCHHHHHhhCCcccccccc--CCceEEE-EecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC
Q 006891 187 GRHLLHLSRYYSAQESAELFPTLAMKAKD--RSLKGAV-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA 263 (627)
Q Consensus 187 ~~~g~~~~~~l~~~~~~~~~p~l~~~~~~--~~~~g~~-~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~ 263 (627)
...|++ .++++++++.+.+|.+ .. +.+.+++ .+.++++||..++..+.+.++++|++|+++++|+++..++
T Consensus 158 ~~~g~~-~~~l~~~e~~~~~P~l----~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~- 231 (416)
T PRK00711 158 EEAGVP-YELLDRDELAAVEPAL----AGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG- 231 (416)
T ss_pred HHcCCC-ceecCHHHHHHhCCCc----cCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-
Confidence 256775 8899999999999987 31 3445554 5668999999999999999999999999999999998876
Q ss_pred CCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCCCceecCcceEEEecCCCCCCCcceecccCCCCcEE
Q 006891 264 SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVV 343 (627)
Q Consensus 264 g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~ 343 (627)
+ ++++|+.. + .++.||.||+|+|+|+..+.+.++.+ .++.|.+|+++.++..... ..+.... ......+
T Consensus 232 ~-~~~~v~t~----~--~~~~a~~VV~a~G~~~~~l~~~~g~~--~pi~p~rg~~~~~~~~~~~-~~p~~~~-~~~~~~~ 300 (416)
T PRK00711 232 G-RITGVQTG----G--GVITADAYVVALGSYSTALLKPLGVD--IPVYPLKGYSLTVPITDED-RAPVSTV-LDETYKI 300 (416)
T ss_pred C-EEEEEEeC----C--cEEeCCEEEECCCcchHHHHHHhCCC--cccCCccceEEEEecCCCC-CCCceeE-EecccCE
Confidence 4 66666542 1 36899999999999999998887765 4689999988766432111 1111110 1112222
Q ss_pred EEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceee
Q 006891 344 FMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVC 423 (627)
Q Consensus 344 ~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~ 423 (627)
++.+.++++++|++.+.. ..+..++++..+.+.+.+.++| |.+....+.+.|+|+||.++| ..|+|+
T Consensus 301 ~~~~~~~~~~iG~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~~w~G~r~~t~D----------~~PiIG 367 (416)
T PRK00711 301 AITRFDDRIRVGGMAEIV--GFDLRLDPARRETLEMVVRDLF-PGGGDLSQATFWTGLRPMTPD----------GTPIVG 367 (416)
T ss_pred EEeecCCceEEEEEEEec--CCCCCCCHHHHHHHHHHHHHHC-CCcccccccceeeccCCCCCC----------CCCEeC
Confidence 233345778898765442 2234566778888999999999 888877889999999999998 468887
Q ss_pred ec-CCCeEEEecC---hhhhHHHHHHHHHHHHHHc
Q 006891 424 ED-FPGLVTITGG---KWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 424 ~~-~~gl~~~~Gg---~~t~~~~~Ae~~~~~~~~~ 454 (627)
.. .+|++.++|. ++|++|.+|+.+++++.+.
T Consensus 368 ~~~~~gl~~a~G~~g~G~~~ap~~g~~la~li~g~ 402 (416)
T PRK00711 368 ATRYKNLWLNTGHGTLGWTMACGSGQLLADLISGR 402 (416)
T ss_pred CcCCCCEEEecCCchhhhhhhhhHHHHHHHHHcCC
Confidence 64 3799999874 4999999999999998754
No 14
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.97 E-value=1e-28 Score=261.99 Aligned_cols=340 Identities=18% Similarity=0.127 Sum_probs=227.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC--CCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~--g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
.++||+||||||+|+++|++|+++|++|+|||++..++ ++|..+.++++..+... .....+..+++....
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~--------~~~~~l~~~s~~~~~ 73 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEG--------PAYVPLVLRAQELWR 73 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCC--------chhhHHHHHHHHHHH
Confidence 35899999999999999999999999999999987653 45555555554322110 011222223333222
Q ss_pred HHHHHC-CCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccC-CceEEEEec
Q 006891 148 QVIRNA-PHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR-SLKGAVVYY 225 (627)
Q Consensus 148 ~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~-~~~g~~~~~ 225 (627)
.+.+.. .......+.+...... ..... .....+ ...|++ .++++++++.+++|.+ +.. ...+.+.+.
T Consensus 74 ~l~~~~~~~~~~~~G~l~~~~~~--~~~~~---~~~~~~-~~~g~~-~~~l~~~~~~~~~P~l----~~~~~~~a~~~~~ 142 (376)
T PRK11259 74 ELERESGEPLFVRTGVLNLGPAD--SDFLA---NSIRSA-RQHGLP-HEVLDAAEIRRRFPQF----RLPDGYIALFEPD 142 (376)
T ss_pred HHHHHhCCccEEEECCEEEcCCC--CHHHH---HHHHHH-HHcCCC-cEEECHHHHHHhCCCC----cCCCCceEEEcCC
Confidence 222211 1111111222211111 11111 122222 245665 7899999999999988 433 344556677
Q ss_pred CceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcC
Q 006891 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~ 305 (627)
+|+++|.+++..+.+.+.+.|++++++++|+++..+++ .+ .|+. .+| .+.||.||+|+|+|+..+..++.
T Consensus 143 ~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~---~~g---~~~a~~vV~A~G~~~~~l~~~~~- 212 (376)
T PRK11259 143 GGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD--GV-TVTT---ADG---TYEAKKLVVSAGAWVKDLLPPLE- 212 (376)
T ss_pred CCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC--eE-EEEe---CCC---EEEeeEEEEecCcchhhhccccc-
Confidence 99999999999999999999999999999999998653 22 2433 222 68999999999999998877532
Q ss_pred CCCCceecCcceEEEecCCCC---CCCcceecccCCCCcEEEEEec-CCc-EEEecCCCCC-----CCCCCCCCCHHHHH
Q 006891 306 NVQPMICPSSGVHIVLPDYYS---PEGMGLIVPKTKDGRVVFMLPW-LGR-TVAGTTDSDT-----VITLLPEPHEDEIQ 375 (627)
Q Consensus 306 ~~~~~i~p~kG~~lv~~~~~~---~~~~~~~~~~~~dg~~~~~~P~-~g~-~~iG~t~~~~-----~~~~~~~~~~~~~~ 375 (627)
.++.|.+++++.+..... ....+.+.....+++.+|++|. ++. +++|++.... +..+.....++..+
T Consensus 213 ---~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (376)
T PRK11259 213 ---LPLTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGA 289 (376)
T ss_pred ---CCceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHH
Confidence 357899999888764211 1112222221345666888997 456 8898876411 11111222366789
Q ss_pred HHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec--CCCeEEEecC---hhhhHHHHHHHHHHH
Q 006891 376 FILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNA 450 (627)
Q Consensus 376 ~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~--~~gl~~~~Gg---~~t~~~~~Ae~~~~~ 450 (627)
.+++.+.++| |.+.. +.+.|+|+||.++| ..|+|+.. .+|++.++|. ++|.+|.+|+.++++
T Consensus 290 ~l~~~~~~~~-P~~~~--~~~~~~g~~~~t~D----------~~P~ig~~~~~~gl~~~~G~~g~G~~~ap~~g~~la~l 356 (376)
T PRK11259 290 ELRPFLRNYL-PGVGP--CLRGAACTYTNTPD----------EHFIIDTLPGHPNVLVASGCSGHGFKFASVLGEILADL 356 (376)
T ss_pred HHHHHHHHHC-CCCCc--cccceEEecccCCC----------CCceeecCCCCCCEEEEecccchhhhccHHHHHHHHHH
Confidence 9999999999 77654 88999999999998 47888864 4799999885 499999999999999
Q ss_pred HHHc
Q 006891 451 AIKS 454 (627)
Q Consensus 451 ~~~~ 454 (627)
|.+.
T Consensus 357 i~~~ 360 (376)
T PRK11259 357 AQDG 360 (376)
T ss_pred HhcC
Confidence 9764
No 15
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.97 E-value=3.2e-28 Score=257.03 Aligned_cols=330 Identities=17% Similarity=0.143 Sum_probs=213.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHHHH
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIR 151 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (627)
+||+|||||++|+++|++|+++|++|+|||++..+.|+|++|.|+++....... ..+.+..+.......+.+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~--------~~~~l~~~~~~~~~~l~~ 72 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPG--------PAWDRARRSREIWLELAA 72 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCCc--------cHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999889999999998864211100 011222222222222222
Q ss_pred HCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEE-ecCceec
Q 006891 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDGQMN 230 (627)
Q Consensus 152 ~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~-~~~g~~~ 230 (627)
.........+.+.......+.... ....+.. ...+++ .++++++++.+.+|.+ ..+...++++ +.++++|
T Consensus 73 ~~~~~~~~~g~l~~~~~~~~~~~~---~~~~~~~-~~~g~~-~~~l~~~~~~~~~p~l----~~~~~~~~~~~~~~g~v~ 143 (365)
T TIGR03364 73 KAGIWVRENGSLHLARTEEELAVL---EEFAATR-EPAEYR-VELLTPAEVAAKFPAL----RLDGLRGGLHSPDELRVE 143 (365)
T ss_pred HcCCCEEeCCEEEEeCCHHHHHHH---HHHHHhh-hhcCCC-eEEECHHHHHHhCCCC----CccCceEEEEcCCCeeEC
Confidence 211111222222222111111111 0111111 133443 7899999999999988 4455556654 5689999
Q ss_pred hHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCCC
Q 006891 231 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQP 309 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~~ 309 (627)
|..++..+.+.+.++ |++++++++|++|.. + . |.+. .| .+.|+.||+|+|+|+..|.+.++.. .
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~-~---v~t~---~g---~i~a~~VV~A~G~~s~~l~~~~~~~--~ 208 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET---G-T---VRTS---RG---DVHADQVFVCPGADFETLFPELFAA--S 208 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C-e---EEeC---CC---cEEeCEEEECCCCChhhhCcchhhc--c
Confidence 999999999988875 999999999999853 2 2 3331 23 4789999999999999887665433 3
Q ss_pred ceecCcceEEEecCCCC-CCC----cc--------eec---------------cc-CCCCcEEEEEecC-CcEEEecCCC
Q 006891 310 MICPSSGVHIVLPDYYS-PEG----MG--------LIV---------------PK-TKDGRVVFMLPWL-GRTVAGTTDS 359 (627)
Q Consensus 310 ~i~p~kG~~lv~~~~~~-~~~----~~--------~~~---------------~~-~~dg~~~~~~P~~-g~~~iG~t~~ 359 (627)
++.|.||+.+.+++... ... .+ +.. +. ...+..+|+.|.. |++++|.+.+
T Consensus 209 ~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~ 288 (365)
T TIGR03364 209 GVRRCKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHE 288 (365)
T ss_pred CcceEEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCccc
Confidence 58899999888754221 000 00 000 00 0123457889974 6799998865
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeecCCCeEEEecC---h
Q 006891 360 DTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGG---K 436 (627)
Q Consensus 360 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~~~gl~~~~Gg---~ 436 (627)
.... .+...+.+..+.+.+.+.+++ .+...++.+.|+|+||.++| ..+++....+|++.++|. +
T Consensus 289 ~~~~-~~~~~~~~~~~~l~~~~~~~~--~l~~~~~~~~w~G~r~~t~d----------~~~v~~~~~~g~~~a~G~~g~G 355 (365)
T TIGR03364 289 YGLA-PDPFDDEEIDNLILAEAKTIL--GLPDLDIVERWQGVYASSPP----------APIFLERPDDGVTVVVVTSGAG 355 (365)
T ss_pred ccCC-CCCcchHHHHHHHHHHHHHhc--CCCCCceEEEEeEEecCCCC----------CCceecCCCCCeEEEEecCCCc
Confidence 4321 122224445566777777664 57777899999999999987 356665445799999874 3
Q ss_pred hhhHHHHHHH
Q 006891 437 WTTYRSMAED 446 (627)
Q Consensus 437 ~t~~~~~Ae~ 446 (627)
++++|.+|++
T Consensus 356 ~~~ap~~~~~ 365 (365)
T TIGR03364 356 MTLSFGLAEE 365 (365)
T ss_pred ccccccccCC
Confidence 9999999863
No 16
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.97 E-value=1.9e-28 Score=276.76 Aligned_cols=334 Identities=19% Similarity=0.137 Sum_probs=223.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC-CCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHH----HHHHH
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVF----HALEE 145 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~-~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~----~~l~~ 145 (627)
.+||+||||||+|+++|++|+++|++|+|||++. +++|+|+++.|++++.+...... ..++.. .++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~-------~~~l~~~a~~~a~~~ 332 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNA-------LSRFFRAAFLFARRF 332 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCH-------HHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999985 88999999999997654321110 011111 11111
Q ss_pred HHHHHHHCCC-CcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEe
Q 006891 146 RKQVIRNAPH-LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY 224 (627)
Q Consensus 146 ~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~ 224 (627)
...+.+.... .....+.+.......+.. .+...+.........++++.+++.+.+|.. ....+.+.+
T Consensus 333 ~~~l~~~~~~~~~~~~G~l~~a~~~~~~~------~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~------~~~~g~~~p 400 (662)
T PRK01747 333 YDALPAAGVAFDHDWCGVLQLAWDEKSAE------KIAKMLALGLPAELARALDAEEAEELAGLP------VPCGGIFYP 400 (662)
T ss_pred HHHHHhcCCCCCCCCCceEEeecCchHHH------HHHHHHhccCchHhhhhCCHHHHHHHhCCC------CCCCcEEeC
Confidence 1111100000 011112222221111111 111222111111136788998888877643 233455667
Q ss_pred cCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhc
Q 006891 225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (627)
Q Consensus 225 ~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g 304 (627)
.+|+++|..++.++.+.+.+ |++++++++|+++..+++ .+. |.+ .++ ..+.|+.||+|+|.|+..+....
T Consensus 401 ~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~--~~~-v~t---~~g--~~~~ad~VV~A~G~~s~~l~~~~- 470 (662)
T PRK01747 401 QGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDD--GWQ-LDF---AGG--TLASAPVVVLANGHDAARFAQTA- 470 (662)
T ss_pred CCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC--EEE-EEE---CCC--cEEECCEEEECCCCCcccccccc-
Confidence 78999999999999999999 999999999999988663 343 433 223 35689999999999998886643
Q ss_pred CCCCCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEe-c-CCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHh
Q 006891 305 QNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLP-W-LGRTVAGTTDSDTVITLLPEPHEDEIQFILDAIS 382 (627)
Q Consensus 305 ~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P-~-~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~ 382 (627)
..++.|.||+++.++..........++ ..+ .|++| . +|.+++|.|.+..+ .+..++.++.+.+++.+.
T Consensus 471 ---~lpl~p~RGqv~~~~~~~~~~~~~~~~--~~~---~Y~~p~~~~g~~~iGat~~~~~--~~~~~~~~~~~~~~~~l~ 540 (662)
T PRK01747 471 ---HLPLYSVRGQVSHLPTTPALSALKQVL--CYD---GYLTPQPANGTHCIGASYDRDD--TDTAFREADHQENLERLA 540 (662)
T ss_pred ---CCCcccccceEEeecCCccccccCcee--ECC---ceeCCCCCCCceEeCcccCCCC--CCCCCCHHHHHHHHHHHH
Confidence 246899999998876432110101111 112 37888 4 56788999886532 345677888999999999
Q ss_pred hhcccCC-----CccceeeeeeeeeccccCCCCCCCCCCcccceeee----------------------c--CCCeEEEe
Q 006891 383 DYLNVKV-----RRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE----------------------D--FPGLVTIT 433 (627)
Q Consensus 383 ~~~~~~l-----~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~----------------------~--~~gl~~~~ 433 (627)
+++ |.+ ....+...|+|+||.++| +.|+|+. . .+|++.++
T Consensus 541 ~~~-P~l~~~~~~~~~~~~~~aG~R~~tpD----------~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~gl~v~~ 609 (662)
T PRK01747 541 ECL-PQALWAKEVDVSALQGRVGFRCASRD----------RLPMVGNVPDEAATLAEYAALANQQPARDAPRLPGLYVAG 609 (662)
T ss_pred HhC-CCchhhhccCccccCceEEEeccCCC----------cccccCCCCCHHHHHHHHHhhhhccccccCCCCCCeEEEe
Confidence 999 765 355688999999999999 4677765 2 36899998
Q ss_pred cC---hhhhHHHHHHHHHHHHHHc
Q 006891 434 GG---KWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 434 Gg---~~t~~~~~Ae~~~~~~~~~ 454 (627)
|. ++|++|.+|+.++++|++.
T Consensus 610 G~gs~Gl~~ap~~a~~lA~li~g~ 633 (662)
T PRK01747 610 ALGSRGLCSAPLGAELLASQIEGE 633 (662)
T ss_pred cccccHHHHHHHHHHHHHHHHhCC
Confidence 84 4999999999999998743
No 17
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.97 E-value=1.9e-27 Score=252.61 Aligned_cols=339 Identities=15% Similarity=0.142 Sum_probs=223.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC--CCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHH
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS--SGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~--~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (627)
|||+|||||++|+++|++|+++|++|+|||+.+.+ .++|..++++++... ... ....+..++++....+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~--~~~-------~~~~l~~~s~~~~~~l 71 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAY--PED-------FYTPMMLECYQLWAQL 71 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeecc--Cch-------hHhHHHHHHHHHHHHH
Confidence 69999999999999999999999999999998754 244444555554321 111 1122333333333333
Q ss_pred HHHCCC-CcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCce-EEEEecCc
Q 006891 150 IRNAPH-LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLK-GAVVYYDG 227 (627)
Q Consensus 150 ~~~~~~-~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~-g~~~~~~g 227 (627)
.+.... +....+.+...... . ... ...++.+. ..+++ .++++++++.+.+|.+ +.+... +.+.+.+|
T Consensus 72 ~~~~~~~~~~~~G~l~~~~~~-~-~~~---~~~~~~~~-~~g~~-~~~l~~~e~~~~~P~l----~~~~~~~~~~~~~~g 140 (380)
T TIGR01377 72 EKEAGTKLHRQTGLLLLGPKE-N-QFL---KTIQATLS-RHGLE-HELLSSKQLKQRFPNI----RVPRNEVGLLDPNGG 140 (380)
T ss_pred HHHhCCeeEeecCeEEEcCCC-c-HHH---HHHHHHHH-HcCCC-eEEcCHHHHHHhCCCC----cCCCCceEEEcCCCc
Confidence 222111 11111212111111 1 111 12223332 45665 7899999999999988 433333 44556789
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
+++|..++..+.+.++++|++++.+++|+++..++ + .+ .|++. ++ ++.|+.||+|+|+|+..++++++..
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~-~~-~v~~~---~~---~i~a~~vV~aaG~~~~~l~~~~g~~- 210 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEPTE-L-LV-TVKTT---KG---SYQANKLVVTAGAWTSKLLSPLGIE- 210 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-C-eE-EEEeC---CC---EEEeCEEEEecCcchHHHhhhcccC-
Confidence 99999999999999999999999999999998865 3 33 34431 22 6899999999999999999988765
Q ss_pred CCceecCcceEEEecCCCCC-----CCcceecccCCCCcEEEEEecC--CcEEEecCCC-CC-C---CCCCCCCCHHHHH
Q 006891 308 QPMICPSSGVHIVLPDYYSP-----EGMGLIVPKTKDGRVVFMLPWL--GRTVAGTTDS-DT-V---ITLLPEPHEDEIQ 375 (627)
Q Consensus 308 ~~~i~p~kG~~lv~~~~~~~-----~~~~~~~~~~~dg~~~~~~P~~--g~~~iG~t~~-~~-~---~~~~~~~~~~~~~ 375 (627)
.++.|.+++...+...... ...+.++. ......+|+.|.. +..++|.... .. + ...+..+++..++
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (380)
T TIGR01377 211 -IPLQPLRINVCYWREKEPGSYGVSQAFPCFLV-LGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQ 288 (380)
T ss_pred -CCceEEEEEEEEEecCCccccCccCCCCEEEE-eCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHH
Confidence 3577888876655322111 11222222 1122347888864 2455553221 10 0 1112346778899
Q ss_pred HHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec--CCCeEEEecC---hhhhHHHHHHHHHHH
Q 006891 376 FILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNA 450 (627)
Q Consensus 376 ~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~--~~gl~~~~Gg---~~t~~~~~Ae~~~~~ 450 (627)
.+.+.+.+++ |.+.... ...|.|+||.++| ..|+|+.. .+|++.++|+ +||++|.+|+.++++
T Consensus 289 ~l~~~~~~~~-P~l~~~~-~~~~~~~~~~t~D----------~~piIg~~p~~~~l~va~G~~g~G~~~~p~~g~~la~l 356 (380)
T TIGR01377 289 ILRKFVRDHL-PGLNGEP-KKGEVCMYTNTPD----------EHFVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKILAEL 356 (380)
T ss_pred HHHHHHHHHC-CCCCCCc-ceeeEEEeccCCC----------CCeeeecCCCCCCEEEEecCCccceeccHHHHHHHHHH
Confidence 9999999999 8887533 5789999999998 47899875 4799999875 499999999999999
Q ss_pred HHHc
Q 006891 451 AIKS 454 (627)
Q Consensus 451 ~~~~ 454 (627)
|.+.
T Consensus 357 i~~~ 360 (380)
T TIGR01377 357 AMKL 360 (380)
T ss_pred HhcC
Confidence 8754
No 18
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.96 E-value=1.9e-27 Score=257.90 Aligned_cols=347 Identities=16% Similarity=0.079 Sum_probs=220.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchH-HH---HHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQL-KL---VFHA 142 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~-~~---~~~~ 142 (627)
+.++||+|||||++|+++|++|+++ |.+|+|||++.+++|+|++|+|++++...........+..... .+ ..+.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 101 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQA 101 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHHH
Confidence 4568999999999999999999998 9999999999999999999999775321110100000100111 11 1112
Q ss_pred HHHHHHHHHH---CCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCce
Q 006891 143 LEERKQVIRN---APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLK 219 (627)
Q Consensus 143 l~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~ 219 (627)
+.+...+.+. ...+. ..+.+.......+.... ....+.+. ..|++..++++.+++.+.+|.. ....
T Consensus 102 ~~~~~~l~~~~~i~~~~~-~~G~l~~a~~~~~~~~l---~~~~~~~~-~~G~~~~~~l~~~e~~~~~~~~------~~~~ 170 (460)
T TIGR03329 102 VLEIAAFCEQHNIDAQLR-LDGTLYTATNPAQVGSM---DPVVDALE-RRGINSWQRLSEGELARRTGSA------RHLE 170 (460)
T ss_pred HHHHHHHHHHhCCCCCcc-cCCEEEEecCHHHHHHH---HHHHHHHH-HhCCCCeEEcCHHHHHHHhCCC------cceE
Confidence 2222222111 11111 12222222221111111 11222332 4566545899999999888743 2233
Q ss_pred EEEEecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHH
Q 006891 220 GAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (627)
Q Consensus 220 g~~~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l 299 (627)
+.+.+.++++||.+++..|++.+++.|++|+++++|++|.. + ..+.|++ .. ..+.|+.||+|+|+|+..+
T Consensus 171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~---~~~~v~t---~~---g~v~A~~VV~Atga~s~~l 240 (460)
T TIGR03329 171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G---QPAVVRT---PD---GQVTADKVVLALNAWMASH 240 (460)
T ss_pred EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C---CceEEEe---CC---cEEECCEEEEccccccccc
Confidence 45667789999999999999999999999999999999975 3 2233433 12 3689999999999999888
Q ss_pred hhhhcCCCCCceecCcceEEEecCCCCCC-----CcceecccCCCCc--EEEEEec-CCcEEEecCCCCC--CCCCC--C
Q 006891 300 RKLADQNVQPMICPSSGVHIVLPDYYSPE-----GMGLIVPKTKDGR--VVFMLPW-LGRTVAGTTDSDT--VITLL--P 367 (627)
Q Consensus 300 ~~~~g~~~~~~i~p~kG~~lv~~~~~~~~-----~~~~~~~~~~dg~--~~~~~P~-~g~~~iG~t~~~~--~~~~~--~ 367 (627)
...++. .+.|.+++++++.+..... ..+..+ .|.+ ..|+.|. +|++++|...... ....+ .
T Consensus 241 ~~~~~~----~~~p~~~~~~~t~pl~~~~~~~~~~~~~~~---~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~~~~~ 313 (460)
T TIGR03329 241 FPQFER----SIAIVSSDMVITEPAPDLLAATGLDHGTSV---LDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRMLPVF 313 (460)
T ss_pred ChhhcC----eEEEeccceEecCCCcHHHHhhcCCCCceE---ecchhhhhheeECCCCcEEEcCCccccccCccccccc
Confidence 775543 3566777766554211000 011111 1222 2466665 4568888653221 11111 1
Q ss_pred CCCHHHHHHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec--CCCeEEEecC---hhhhHHH
Q 006891 368 EPHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRS 442 (627)
Q Consensus 368 ~~~~~~~~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~--~~gl~~~~Gg---~~t~~~~ 442 (627)
.......+.+.+.+.++| |.+....+.+.|+|+||+++| ..|+|+.. .+|++.++|. ++++++.
T Consensus 314 ~~~~~~~~~l~~~~~~~f-P~L~~~~i~~~W~G~~~~t~D----------~~P~iG~~~~~~gl~~a~G~~G~Gv~~a~~ 382 (460)
T TIGR03329 314 NQPSPYEALLTRSLRKFF-PALAEVPIAASWNGPSDRSVT----------GLPFFGRLNGQPNVFYGFGYSGNGVAPSRM 382 (460)
T ss_pred CCchHHHHHHHHHHHHhC-CCcCCCeeeEEEeceeCCCCC----------CCceeeeecCCCCEEEEeCcCCCChhHHHH
Confidence 122334577888899999 889888899999999999998 47888864 4799999873 4999999
Q ss_pred HHHHHHHHHHHc
Q 006891 443 MAEDAVNAAIKS 454 (627)
Q Consensus 443 ~Ae~~~~~~~~~ 454 (627)
+|+.+++++.+.
T Consensus 383 ~G~~lA~li~g~ 394 (460)
T TIGR03329 383 GGQILSSLVLGL 394 (460)
T ss_pred HHHHHHHHhcCC
Confidence 999999998653
No 19
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.96 E-value=5.2e-27 Score=253.40 Aligned_cols=370 Identities=14% Similarity=0.133 Sum_probs=228.2
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCeEEEEcCC-CCCCCCcC--CCCCcccchh---hhhhhhhccCCcchHH---HHH
Q 006891 72 LDILVIGGGATGCGVALDAATR--GLRVGLVERE-DFSSGTSS--RSTKLIHGGV---RYLEKAVFNLDYGQLK---LVF 140 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~-~~~~g~S~--~~~~~i~~g~---~~~~~~~~~~~~~~~~---~~~ 140 (627)
+||+||||||+|+++|++|+++ |.+|+|+||. +++.++|+ +|+|.+|.+. .|...... +...+. ...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~--~~~~l~~a~~~~ 78 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMAD--GSIDIAKAVGIN 78 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCC--CchhHHHHHHHH
Confidence 6999999999999999999997 9999999996 48888998 5899999887 33221100 000110 111
Q ss_pred HHHHHHHHHH-HHCCC--------CcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCC-Cccc-cCHHHHHhhCCcc
Q 006891 141 HALEERKQVI-RNAPH--------LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH-LSRY-YSAQESAELFPTL 209 (627)
Q Consensus 141 ~~l~~~~~~~-~~~~~--------~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~-~~~~-l~~~~~~~~~p~l 209 (627)
+.......++ ..... +..+.+.+.......+...+. ..+..+ ..+++. ..++ ++++++.+.+|.+
T Consensus 79 ~~~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~---~~~~~~-~~~g~~~~~~~~l~~~el~~~eP~l 154 (483)
T TIGR01320 79 EQFQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLK---KRYEAL-KGHPLFEGMEFSEDPATFAEWLPLM 154 (483)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHH---HHHHHH-hcCCCccCceEeCCHHHHHHhCCCc
Confidence 1111111111 00000 111122222222222222221 223333 245553 2454 7999999999998
Q ss_pred ccccccC-CceEEEEecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeE
Q 006891 210 AMKAKDR-SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVV 288 (627)
Q Consensus 210 ~~~~~~~-~~~g~~~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~V 288 (627)
......+ ...+.+.+.++++||..++.++.+.++++|++|+++++|+++..++++ .+ .|.+.+..+|+..+++|++|
T Consensus 155 ~~~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~-~v-~v~~~~~~~g~~~~i~A~~V 232 (483)
T TIGR01320 155 AAGRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDG-SW-TVTVKNTRTGGKRTLNTRFV 232 (483)
T ss_pred ccCCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC-eE-EEEEeeccCCceEEEECCEE
Confidence 2100001 334445677899999999999999999999999999999999986543 32 34443323444457999999
Q ss_pred EeccCCChHHHhhhhcCCC--CCceecCcceEEEecCC-CCCCCcceecccCCCCcEEEEEecC------CcE--EEecC
Q 006891 289 VNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDY-YSPEGMGLIVPKTKDGRVVFMLPWL------GRT--VAGTT 357 (627)
Q Consensus 289 V~AtG~~s~~l~~~~g~~~--~~~i~p~kG~~lv~~~~-~~~~~~~~~~~~~~dg~~~~~~P~~------g~~--~iG~t 357 (627)
|||+|+|++.|++++|... ...+.|.+|+++.++.+ ......+.+++....+...|.+|+. |.. ++||+
T Consensus 233 V~AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~ 312 (483)
T TIGR01320 233 FVGAGGGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPY 312 (483)
T ss_pred EECCCcchHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcC
Confidence 9999999999999998762 45789999999998754 2223345566533333335677643 333 49999
Q ss_pred CC--CCC--CCC--C--CCCCHHHH-------------------------HHHHHHHhhhcccCCCccceeeeeeeeecc
Q 006891 358 DS--DTV--ITL--L--PEPHEDEI-------------------------QFILDAISDYLNVKVRRTDVLSAWSGIRPL 404 (627)
Q Consensus 358 ~~--~~~--~~~--~--~~~~~~~~-------------------------~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~ 404 (627)
.. +.- ... + ...+..++ ...++.+++++ |.++..|+....+|+|+.
T Consensus 313 A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-p~~~~~d~~~~~~GiR~Q 391 (483)
T TIGR01320 313 AGWSPKFLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSALREFY-PEAIDSDWELIVAGQRVQ 391 (483)
T ss_pred CCcchHhhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCHHHcEEccCceEEE
Confidence 87 310 011 1 11111111 12345567888 899999999999999998
Q ss_pred ccCCCCCCC--CCCc-ccceeeecCCCeEEE-ecC--hhhhHHHHHHHHHHHHH
Q 006891 405 AMDPSAKNT--ESIS-RDHVVCEDFPGLVTI-TGG--KWTTYRSMAEDAVNAAI 452 (627)
Q Consensus 405 ~~d~~~~~~--~~~~-r~~~i~~~~~gl~~~-~Gg--~~t~~~~~Ae~~~~~~~ 452 (627)
..+.+. .. +.+. .+++|.. .++.+++ .+- ..|++..+|+++++...
T Consensus 392 ~i~~~~-~~~~g~l~~g~~~i~~-~~~~~~~l~~~SPgaTss~~i~~~v~~~~~ 443 (483)
T TIGR01320 392 VIKKDP-EKGGGVLEFGTTLIAD-ADGSIAGLLGASPGASTAVSIMLDLLERCF 443 (483)
T ss_pred EEecCC-CCCcCEEecCCeEEEC-CCCeEEEecCCCchHHhhHHHHHHHHHHHh
Confidence 765321 11 1222 2456654 3465554 443 59999999999998654
No 20
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.96 E-value=1.5e-26 Score=246.41 Aligned_cols=351 Identities=21% Similarity=0.226 Sum_probs=229.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhh-h-hhccCCcchHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLE-K-AVFNLDYGQLKLVFHALEER 146 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~-~-~~~~~~~~~~~~~~~~l~~~ 146 (627)
+.++||+||||||+|+++||+|+++|.+|+|+|++..+.|+|++|++.+...+.... . ....... .....|+.+.+.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLAD-LSLALWRELSEE 80 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhH-HHHHHHHHHHHH
Confidence 346899999999999999999999999999999999888999999887765433211 0 0000000 001111111111
Q ss_pred HHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEE-EEec
Q 006891 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGA-VVYY 225 (627)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~-~~~~ 225 (627)
.. ....+.... .+...... ..............+. ..... .+.++..+..+.+|.+ ..+...++ +.+.
T Consensus 81 ~~---~~~~~~~~~-~i~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~p~l----~~~~~~~a~~~~~ 149 (387)
T COG0665 81 LG---TGAGLRRRG-LLDLAARE-GLKGLAQLERLAAELE-AAGED-AELLDAAEAAELEPAL----GPDFVCGGLFDPT 149 (387)
T ss_pred hC---cchhcchhh-hhhhhhcc-ccchHHHHHHHHHHHH-hcCCC-ceeCCHHHHHHhCCCC----CcccceeeEecCC
Confidence 10 000111110 00000000 0000000011111111 12211 2678899999999998 54545555 4567
Q ss_pred CceechHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhc
Q 006891 226 DGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g 304 (627)
+++++|..++..+++.+.++| ..+..+++|..+..+ + ++++|.+. .| ++.|+.||+|+|.|+..+..+.+
T Consensus 150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~---~g---~i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETD---GG---TIEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeC---Cc---cEEeCEEEEcCchHHHHHHHhcC
Confidence 899999999999999999999 566669999999886 2 34555542 22 49999999999999999999888
Q ss_pred CCCCCceecCcceEEEecCCCCCCCcc---eecccCCCCcEEEEEec-CCcEEEecCCCCCC-CCCCCCCCHHHHHHHHH
Q 006891 305 QNVQPMICPSSGVHIVLPDYYSPEGMG---LIVPKTKDGRVVFMLPW-LGRTVAGTTDSDTV-ITLLPEPHEDEIQFILD 379 (627)
Q Consensus 305 ~~~~~~i~p~kG~~lv~~~~~~~~~~~---~~~~~~~dg~~~~~~P~-~g~~~iG~t~~~~~-~~~~~~~~~~~~~~ll~ 379 (627)
....++.|.+|+++.++......... ... .......|++|. ++.+++|.+.+... ...+....+..+.++++
T Consensus 221 -~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (387)
T COG0665 221 -ELPLPLRPVRGQALTTEPPEGLLADGLAPVVL--VVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLR 297 (387)
T ss_pred -CCcCccccccceEEEecCCCccccccccceEE--EecCCceEEEEcCCCcEEEeecccccCCCCccccCcchhHHHHHH
Confidence 33457899999999887543211111 111 122334678885 67889999876642 21222211114779999
Q ss_pred HHhhhcccCCCccceeeeeeeeeccc-cCCCCCCCCCCcccceeee-c-CCCeEEEecC---hhhhHHHHHHHHHHHHHH
Q 006891 380 AISDYLNVKVRRTDVLSAWSGIRPLA-MDPSAKNTESISRDHVVCE-D-FPGLVTITGG---KWTTYRSMAEDAVNAAIK 453 (627)
Q Consensus 380 ~~~~~~~~~l~~~~i~~~~aG~Rp~~-~d~~~~~~~~~~r~~~i~~-~-~~gl~~~~Gg---~~t~~~~~Ae~~~~~~~~ 453 (627)
.+.+++ |.+....+.+.|+|+||.+ +| +.|+|+. . .+|++.++|. ++|++|.+|+.+++++.+
T Consensus 298 ~~~~~~-P~l~~~~~~~~w~g~~~~t~pd----------~~P~iG~~~~~~~l~~a~G~~~~G~~~~p~~g~~lA~li~g 366 (387)
T COG0665 298 VARALL-PGLADAGIEAAWAGLRPPTTPD----------GLPVIGRAAPLPNLYVATGHGGHGFTLAPALGRLLADLILG 366 (387)
T ss_pred HHHHhC-ccccccccceeeeccccCCCCC----------CCceeCCCCCCCCEEEEecCCCcChhhccHHHHHHHHHHcC
Confidence 999999 8988888899999999987 88 4788884 3 4799999986 399999999999999987
Q ss_pred c
Q 006891 454 S 454 (627)
Q Consensus 454 ~ 454 (627)
.
T Consensus 367 ~ 367 (387)
T COG0665 367 G 367 (387)
T ss_pred C
Confidence 5
No 21
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.96 E-value=2.7e-28 Score=232.75 Aligned_cols=356 Identities=20% Similarity=0.263 Sum_probs=257.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCC-CCCCCCcCCCCCcccchhhhhhhhhc-cCCcchHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKAVF-NLDYGQLKLVFHALE 144 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~-~~~~g~S~~~~~~i~~g~~~~~~~~~-~~~~~~~~~~~~~l~ 144 (627)
...||+|||||||+|++.|++|.-+ +++|.|+||. +++-.+|++|++.+|.|+.|.+..+. .++-....+.++.+.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 5679999999999999999999999 9999999998 68889999999999999998765433 345555566666666
Q ss_pred HHHHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhh--cCCCCCCccccCHHHHHhhCCccccccccCCceEEE
Q 006891 145 ERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA--GRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAV 222 (627)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~--~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~ 222 (627)
+...-+.....+ +-..+..+.+. +..++. .+++++..+++...++.+++|+. ..+.+.+
T Consensus 126 e~~IpyKk~GKL-------IVAt~~~Eipr------Ld~L~~~g~qN~v~glrmieg~ei~~~EP~c------rgvkAl~ 186 (453)
T KOG2665|consen 126 EKKIPYKKTGKL-------IVATESEEIPR------LDALMHRGTQNGVPGLRMIEGSEIMEMEPYC------RGVKALL 186 (453)
T ss_pred hcCCChhhcceE-------EEEeChhhcch------HHHHHHhhhhcCCCCeeeeccchhhhcChhh------hhhhhhc
Confidence 654433222222 11222223332 222222 37899999999999999999988 6677778
Q ss_pred EecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhh
Q 006891 223 VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (627)
Q Consensus 223 ~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~ 302 (627)
.+..|.+|-..++..+.+..+..|..+.++-++..+.++.++---.-+++ .+|+..+++.+.||-|+|..++.+...
T Consensus 187 sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv---~ngk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 187 SPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVV---LNGKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred CCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEE---ecCccceeEEeEEEEeccccHhHHHHH
Confidence 89999999999999999999999999999999999987654300011333 245556899999999999999999999
Q ss_pred hcCCCCCceecCcceEEEecCCCCCCCcceecccCCCCcEEEE----Eec-CCcEEEecCCC---------CCC------
Q 006891 303 ADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFM----LPW-LGRTVAGTTDS---------DTV------ 362 (627)
Q Consensus 303 ~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~----~P~-~g~~~iG~t~~---------~~~------ 362 (627)
.|.+..+.|.|.+|.++.+.+......++-++| .+|.|+-|+ .|+ ++.+++|+... +.+
T Consensus 264 sgc~~dPriVpfrG~ylll~~ek~h~vk~niyP-vpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~ 342 (453)
T KOG2665|consen 264 SGCELDPRIVPFRGEYLLLKPEKLHLVKGNIYP-VPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDL 342 (453)
T ss_pred hCCCCCCeeeeccchhhhcChHHhccccCceee-CCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccch
Confidence 998888899999999888765555444555565 445553332 343 34455554321 000
Q ss_pred --------------CCCCCCCCHH----HHHHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeee
Q 006891 363 --------------ITLLPEPHED----EIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE 424 (627)
Q Consensus 363 --------------~~~~~~~~~~----~~~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~ 424 (627)
...+..+++- .+..-+..+++++ |+++..+|.+-.+|+|....|. .+++..||++..
T Consensus 343 ~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyi-Pdlk~~di~rGpaGvRaqald~----~gnlv~DFVfd~ 417 (453)
T KOG2665|consen 343 VEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYI-PDLKDSDIERGPAGVRAQALDG----DGNLVDDFVFDG 417 (453)
T ss_pred hhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhC-ccccccccccCcccccchhccC----CCCCchheEEec
Confidence 0011122222 2233347889999 9999999999999999766563 456667898875
Q ss_pred c----CCCeEEEecC---hhhhHHHHHHHHHHHHH
Q 006891 425 D----FPGLVTITGG---KWTTYRSMAEDAVNAAI 452 (627)
Q Consensus 425 ~----~~gl~~~~Gg---~~t~~~~~Ae~~~~~~~ 452 (627)
+ .++++++.+. ..|++.+||++++|.+.
T Consensus 418 g~g~~~p~llh~rnapSPgaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 418 GEGHLVPRLLHVRNAPSPGATSSLAIAKMIADKFL 452 (453)
T ss_pred CccccccceEEecCCCCccchhhHHHHHHHHHHhc
Confidence 3 3678998876 39999999999998764
No 22
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.95 E-value=2.3e-26 Score=240.26 Aligned_cols=319 Identities=22% Similarity=0.251 Sum_probs=220.5
Q ss_pred HHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhh--hhhhhhccCCcchHHHHHHHHHHHHHHHHH------CCCCccc
Q 006891 88 LDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVR--YLEKAVFNLDYGQLKLVFHALEERKQVIRN------APHLSNA 159 (627)
Q Consensus 88 ~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~ 159 (627)
|+|+++|.+|+||||+.++.|+|++|+|+++.... |... ....+..++......+.+. .+...+.
T Consensus 1 ~~La~~G~~V~vle~~~~~~gaS~~~~g~~~~~~~~~~~~~-------~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~ 73 (337)
T TIGR02352 1 WELAKRGHSVTLFDRDPMGGGASWAAAGMLAPHAECEYAED-------PLFDLALESLRLYPEWLEALKELTGLDTGYHQ 73 (337)
T ss_pred ChHHHCCCceEEEcCCCCCcccchhhhcCcccccccccCCc-------hHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEE
Confidence 57999999999999999999999999999865431 1111 1122222222222222111 1111122
Q ss_pred CCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEE-ecCceechHHHHHHH
Q 006891 160 LPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDGQMNDSRLNVGL 238 (627)
Q Consensus 160 ~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~-~~~g~~~~~~l~~~l 238 (627)
.+.+.......+.... .+..+.. ...+. ..++++++++.+.+|.+ +. ...++++ +.+|+++|..++..+
T Consensus 74 ~G~l~~a~~~~~~~~l---~~~~~~~-~~~~~-~~~~l~~~e~~~~~p~l----~~-~~~~g~~~~~~g~v~p~~l~~~l 143 (337)
T TIGR02352 74 CGTLVVAFDEDDVEHL---RQLADLQ-SATGM-EVEWLSGRALRRLEPYL----SG-GIRGAVFYPDDAHVDPRALLKAL 143 (337)
T ss_pred ccEEEEeCCHHHHHHH---HHHHHHH-HhcCC-ceEEcCHHHHHHhCCCC----Cc-ccceEEEcCCCceEChHHHHHHH
Confidence 2222221111111111 1122222 24555 48999999999999998 43 3445544 568999999999999
Q ss_pred HHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCCCceecCcceE
Q 006891 239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGVH 318 (627)
Q Consensus 239 ~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~~~i~p~kG~~ 318 (627)
++.+.++|++++.+++|++|..++ + ++++|.+. . ..++||.||+|+|+|+..|.. .++.|.+|++
T Consensus 144 ~~~~~~~g~~~~~~~~v~~i~~~~-~-~~~~v~~~---~---g~~~a~~vV~a~G~~~~~l~~-------~~~~~~~g~~ 208 (337)
T TIGR02352 144 EKALEKLGVEIIEHTEVQHIEIRG-E-KVTAIVTP---S---GDVQADQVVLAAGAWAGELLP-------LPLRPVRGQP 208 (337)
T ss_pred HHHHHHcCCEEEccceEEEEEeeC-C-EEEEEEcC---C---CEEECCEEEEcCChhhhhccc-------CCccccCceE
Confidence 999999999999999999999865 5 67777542 2 278999999999999998765 2478999999
Q ss_pred EEecCCCCCC-CcceecccCCCCcEEEEEecC-CcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHhhhcccCCCccceee
Q 006891 319 IVLPDYYSPE-GMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVRRTDVLS 396 (627)
Q Consensus 319 lv~~~~~~~~-~~~~~~~~~~dg~~~~~~P~~-g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~i~~ 396 (627)
++++....+. ....... ......|++|.. |.+++|+++...+ .+..++.+.++.+++.+.++| |.+....+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~--~~~~~~y~~p~~~g~~~iG~~~~~~~--~~~~~~~~~~~~l~~~~~~~~-P~l~~~~~~~ 283 (337)
T TIGR02352 209 LRLEAPAVPLLNRPLRAV--VYGRRVYIVPRRDGRLVVGATMEESG--FDTTPTLGGIKELLRDAYTIL-PALKEARLLE 283 (337)
T ss_pred EEeeccccccCCcccceE--EEcCCEEEEEcCCCeEEEEEeccccC--ccCCCCHHHHHHHHHHHHHhC-CCcccCcHHH
Confidence 9886432111 1111001 112346888964 6689999876532 355677889999999999999 8888888999
Q ss_pred eeeeeeccccCCCCCCCCCCcccceeeec--CCCeEEEecC---hhhhHHHHHHHHHHHHHH
Q 006891 397 AWSGIRPLAMDPSAKNTESISRDHVVCED--FPGLVTITGG---KWTTYRSMAEDAVNAAIK 453 (627)
Q Consensus 397 ~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~--~~gl~~~~Gg---~~t~~~~~Ae~~~~~~~~ 453 (627)
.|+|+||+++| +.|+|+.. .+|+|.++|. +++++|.+|+.+++++.+
T Consensus 284 ~~~g~r~~t~D----------~~piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 284 TWAGLRPGTPD----------NLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLILG 335 (337)
T ss_pred heecCCCCCCC----------CCCEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHhc
Confidence 99999999998 47888864 4689988774 399999999999999874
No 23
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.95 E-value=1.8e-25 Score=239.37 Aligned_cols=373 Identities=16% Similarity=0.141 Sum_probs=227.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcC-CCCCCCCcCC--CCCcccchhhhhhhhhc----cCCcchHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVER-EDFSSGTSSR--STKLIHGGVRYLEKAVF----NLDYGQLKLV 139 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk-~~~~~g~S~~--~~~~i~~g~~~~~~~~~----~~~~~~~~~~ 139 (627)
...+|||||||||+|+++|+.|++. |.+|+|+|| ..++.++|++ |+|.+|.|.-....... .........+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i 83 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEI 83 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHH
Confidence 4568999999999999999999998 899999999 6788889855 88888877522111000 0000000011
Q ss_pred HHHHHHHHHHHHHCC---------CCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCC-CCcccc-CHHHHHhhCCc
Q 006891 140 FHALEERKQVIRNAP---------HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLL-HLSRYY-SAQESAELFPT 208 (627)
Q Consensus 140 ~~~l~~~~~~~~~~~---------~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~-~~~~~l-~~~~~~~~~p~ 208 (627)
.+.......++...+ .+..+.+.+.......+..++. ..+..+. ..++ +..+++ +++++.+++|.
T Consensus 84 ~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~---~r~~~~~-~~~~f~~~~~~~d~~el~~~~P~ 159 (497)
T PRK13339 84 NEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLK---KRYEALK-QHPMFDNIEYTEDIEVMAKWMPL 159 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHH---HHHHHhh-ccCCCCCcEEecCHHHHHHhCCc
Confidence 111111111111111 1122222222222222222221 2233332 3333 357888 79999999999
Q ss_pred ccccccc-CCceEEEEecCceechHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcC
Q 006891 209 LAMKAKD-RSLKGAVVYYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK 286 (627)
Q Consensus 209 l~~~~~~-~~~~g~~~~~~g~~~~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~ 286 (627)
+...... ....+.+.+.++.+|+..++.++.+.+.+ .|++++++++|++|.+++++ .+ .|.+.+..+++..+++||
T Consensus 160 l~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~-~w-~v~v~~t~~g~~~~i~Ad 237 (497)
T PRK13339 160 MMPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDG-GW-EVTVKDRNTGEKREQVAD 237 (497)
T ss_pred ccCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCC-CE-EEEEEecCCCceEEEEcC
Confidence 8210001 23444455678899999999999999965 49999999999999887333 22 244332123322368999
Q ss_pred eEEeccCCChHHHhhhhcCCC--CCceecCcceEEEecCCCCC-CCcceecccCCCCcEEEEEecC------Cc--EEEe
Q 006891 287 VVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPWL------GR--TVAG 355 (627)
Q Consensus 287 ~VV~AtG~~s~~l~~~~g~~~--~~~i~p~kG~~lv~~~~~~~-~~~~~~~~~~~dg~~~~~~P~~------g~--~~iG 355 (627)
.||+|+|+|++.|++++|... ...+.|.||+++.++.+... .+.+.+++..+.+...|.+|+. |. +++|
T Consensus 238 ~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~G 317 (497)
T PRK13339 238 YVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPEVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFG 317 (497)
T ss_pred EEEECCCcchHHHHHHcCCCccCCCceEeeeEEEEEecCHHHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEEC
Confidence 999999999999999998753 25799999999998752211 1123466543333334566643 33 5788
Q ss_pred cCCCCCC--CCC--------CCCC--C-------HHH--------------HHHHHHHHhhhcccCCCccceeeeeeeee
Q 006891 356 TTDSDTV--ITL--------LPEP--H-------EDE--------------IQFILDAISDYLNVKVRRTDVLSAWSGIR 402 (627)
Q Consensus 356 ~t~~~~~--~~~--------~~~~--~-------~~~--------------~~~ll~~~~~~~~~~l~~~~i~~~~aG~R 402 (627)
|+..... ... .... . ... -...++.+++++ |.++..|+....+|+|
T Consensus 318 P~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~-P~~~~~D~~~~~aGiR 396 (497)
T PRK13339 318 PYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTFY-PEARAEDWRLYTAGKR 396 (497)
T ss_pred CCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHhC-CCCCHHHeeEcCCceE
Confidence 8765420 000 0000 0 000 123566678888 8999999999999999
Q ss_pred ccccCCCCCCCCCCcccceee-----ecCCCeEEE-ecC--hhhhHHHHHHHHHHHHH
Q 006891 403 PLAMDPSAKNTESISRDHVVC-----EDFPGLVTI-TGG--KWTTYRSMAEDAVNAAI 452 (627)
Q Consensus 403 p~~~d~~~~~~~~~~r~~~i~-----~~~~gl~~~-~Gg--~~t~~~~~Ae~~~~~~~ 452 (627)
+...+. ...+..+|++. ...++.+++ .+- ..|++..+|++|++.+.
T Consensus 397 ~Q~i~~----~~~~~~dfl~~g~~~i~~~~~s~~~lna~SPgATssl~ia~~v~~~~f 450 (497)
T PRK13339 397 VQVIKD----TPEHGKGFIQFGTEVVNSQDHSVIALLGESPGASTSVSVALEVLERNF 450 (497)
T ss_pred EEEEeC----CCCccCCEEEecceeeecCCCeEEEecCCCcHHHhhHHHHHHHHHHHh
Confidence 987653 22333366543 134564444 443 49999999999998754
No 24
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.95 E-value=1.6e-25 Score=241.84 Aligned_cols=373 Identities=14% Similarity=0.130 Sum_probs=227.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCC-CCCCCcC--CCCCcccchh---hhhhhhhccCCcchHHH--
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTSS--RSTKLIHGGV---RYLEKAVFNLDYGQLKL-- 138 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~-~~~g~S~--~~~~~i~~g~---~~~~~~~~~~~~~~~~~-- 138 (627)
+..+||+||||||+|+++||+|+++ |++|+||||.+ ++.++|+ +|+|.+|.+. .|... .....++.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~----~~~g~~~~~~ 78 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPE----KADGSIDISK 78 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCC----CCCCchhHHH
Confidence 4568999999999999999999985 88999999985 5777777 6999999874 22210 00011111
Q ss_pred H---H----HHHHHHHHHHHHC----C-CCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCC-Cccc-cCHHHHHh
Q 006891 139 V---F----HALEERKQVIRNA----P-HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH-LSRY-YSAQESAE 204 (627)
Q Consensus 139 ~---~----~~l~~~~~~~~~~----~-~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~-~~~~-l~~~~~~~ 204 (627)
. . .+......+.+.. + .+....+.+.......+...+. ..++.+. .+++. ..++ ++++++.+
T Consensus 79 a~~~~~~~~~s~~~~~~l~~~g~~~~~~~~~~~~G~l~la~~e~e~~~l~---~~~~~~~-~~g~~~~~~~~~d~~el~e 154 (494)
T PRK05257 79 AVKINEQFQISRQFWAYLVEKGVLPDPRSFINPVPHMSFVWGEDNVAFLK---KRYEALK-ANPLFAGMEFSEDPAQIKE 154 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccCCeEEEEECHHHHHHHH---HHHHHHH-hCCCCCCCEEeCCHHHHHH
Confidence 0 0 0111111111110 0 0111222222222222222211 2233332 44542 3566 48999999
Q ss_pred hCCccccccccC-CceEEEEecCceechHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEE
Q 006891 205 LFPTLAMKAKDR-SLKGAVVYYDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFD 282 (627)
Q Consensus 205 ~~p~l~~~~~~~-~~~g~~~~~~g~~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~ 282 (627)
.+|.+....+.+ ...+.+.+.++.+|+..++.+|.+.+++.| ++++++++|+++..++++ .+ .|.+.+..+|+..+
T Consensus 155 ~eP~l~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg-~~-~v~~~~~~~G~~~~ 232 (494)
T PRK05257 155 WAPLMMEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG-SW-TVTVKDLKTGEKRT 232 (494)
T ss_pred hCcccccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC-CE-EEEEEEcCCCceEE
Confidence 999982100112 334445677889999999999999999987 899999999999986655 33 34443223454346
Q ss_pred EEcCeEEeccCCChHHHhhhhcCCC--CCceecCcceEEEecCCCCC-CCcceecccCCCCcEEEEEec------CCc--
Q 006891 283 TYAKVVVNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPW------LGR-- 351 (627)
Q Consensus 283 i~A~~VV~AtG~~s~~l~~~~g~~~--~~~i~p~kG~~lv~~~~~~~-~~~~~~~~~~~dg~~~~~~P~------~g~-- 351 (627)
+.|++||+|+|+|++.|+++.|... ..++.|.+|++++++.+... .+..-+++...-+...|.+|+ .|.
T Consensus 233 i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~ 312 (494)
T PRK05257 233 VRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPEVVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRS 312 (494)
T ss_pred EEcCEEEECCCcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHHHHhcCCeEEecCCCCCCCCCCCCCCCCcEECCcee
Confidence 9999999999999999999998762 34689999999999754211 112224443222333345553 243
Q ss_pred EEEecCCCCCCC-CCCCC-------CC-----------HHH--------------HHHHHHHHhhhcccCCCccceeeee
Q 006891 352 TVAGTTDSDTVI-TLLPE-------PH-----------EDE--------------IQFILDAISDYLNVKVRRTDVLSAW 398 (627)
Q Consensus 352 ~~iG~t~~~~~~-~~~~~-------~~-----------~~~--------------~~~ll~~~~~~~~~~l~~~~i~~~~ 398 (627)
+++||+...... ..+.. .. ... -...++.+++++ |.++..|+....
T Consensus 313 ~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~d~~~~~ 391 (494)
T PRK05257 313 LLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFY-PNAKPEDWELIV 391 (494)
T ss_pred EEECCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhC-CCCCHHHceEcC
Confidence 678887653210 00000 00 000 123556677888 899988999999
Q ss_pred eeeeccccCCCCCCCCCCcccceeeecCCCeEEE-ecC--hhhhHHHHHHHHHHHHH
Q 006891 399 SGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTI-TGG--KWTTYRSMAEDAVNAAI 452 (627)
Q Consensus 399 aG~Rp~~~d~~~~~~~~~~r~~~i~~~~~gl~~~-~Gg--~~t~~~~~Ae~~~~~~~ 452 (627)
+|+|+...+.+....+.+.-++.+....+|.+++ .|- ..|++..+|+++++.+.
T Consensus 392 aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~~~l~~~SPgat~s~~i~~~v~~~~~ 448 (494)
T PRK05257 392 AGQRVQIIKKDPKKGGVLQFGTEVVSSADGSIAALLGASPGASTAVPIMLEVLEKCF 448 (494)
T ss_pred CceEeEEEccCCCCCCEEECCcEEEecCCCeEEEEcCCCchHHHHHHHHHHHHHHhC
Confidence 9999988764222235566675333344565644 443 59999999999998754
No 25
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.95 E-value=3.2e-25 Score=238.46 Aligned_cols=360 Identities=16% Similarity=0.185 Sum_probs=220.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-C-CeEEEEcCCC-CCCCCc--CCCCCcccchhhhhhhhhccCCcchHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR-G-LRVGLVERED-FSSGTS--SRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHAL 143 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~-G-~~V~lvEk~~-~~~g~S--~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l 143 (627)
+..+|||||||||+|+++|++|+++ + .+|+||||.+ ++.++| ++|++.+|.|..+... ++.......+..
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y-----~~~kA~~~~~~~ 117 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNY-----TLEKARKVKRQA 117 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcC-----CHHHHHHHHHHH
Confidence 4569999999999999999999996 3 6999999985 666666 5678888887533210 111112222211
Q ss_pred HHHHHHHHHCC-----CCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCcccccc----c
Q 006891 144 EERKQVIRNAP-----HLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKA----K 214 (627)
Q Consensus 144 ~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~----~ 214 (627)
.....+....+ ......+.+.......+..++. ..++.+. ..+ +..++++++++.+.+|.+.... +
T Consensus 118 ~~~~~~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~---~~~~~~~-~~~-~~~e~ld~~el~e~eP~v~~~~~~~~~ 192 (497)
T PTZ00383 118 DMLRNYLTKLPPSERDSIIFKMQKMVLGVGEKECEFLE---KRYPVFK-ELF-PSMQLLDKKEIHRVEPRVVLKNNHTLR 192 (497)
T ss_pred HHHHHHHHHhcccccccceeeCCEEEEEECHHHHHHHH---HHHHHHH-ccC-CCeEEECHHHHHHhCcccccCcccccc
Confidence 11111111111 1111222222222222222221 2233333 333 3489999999999999872100 0
Q ss_pred cCCceEEEEecC-ceechHHHHHHHHHHHHH----cC--CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCe
Q 006891 215 DRSLKGAVVYYD-GQMNDSRLNVGLALTAAL----AG--AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKV 287 (627)
Q Consensus 215 ~~~~~g~~~~~~-g~~~~~~l~~~l~~~a~~----~G--v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~ 287 (627)
.+...+.+.+.+ +.+|+..++..+++.+++ +| ++|+++++|++|.++++ .++.|.+. . .+++||.
T Consensus 193 ~e~~~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~--~~~~V~T~---~---G~i~A~~ 264 (497)
T PTZ00383 193 EEPLAALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND--SLYKIHTN---R---GEIRARF 264 (497)
T ss_pred ccceEEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC--CeEEEEEC---C---CEEEeCE
Confidence 123333445556 589999999999999999 88 78999999999998753 45555442 2 2699999
Q ss_pred EEeccCCChHHHhhhhcCCCCCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEe-------cCCcEEEecCCCC
Q 006891 288 VVNAAGPFCDSVRKLADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLP-------WLGRTVAGTTDSD 360 (627)
Q Consensus 288 VV~AtG~~s~~l~~~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P-------~~g~~~iG~t~~~ 360 (627)
||+|+|+|+..|++++|......+.|.+|++++++. ...+.+++.... ..-|..| .++.+++|||..+
T Consensus 265 VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~~~~~~----~~~~kVY~v~~p-~~Pf~~vH~d~~i~~~g~~~~GP~A~~ 339 (497)
T PTZ00383 265 VVVSACGYSLLFAQKMGYGLEYSCLPVAGSFYFSGN----ILNGKVYTVQNP-ALPFAAVHGDPDIIAKGKTRFGPTALP 339 (497)
T ss_pred EEECcChhHHHHHHHhCCCCCCCEEecCceEEEcCh----hhcCceecCCCC-CCCCcCccCCCccCCCCeEEEccCccc
Confidence 999999999999999998767789999999988763 123334432211 1111111 1456889999764
Q ss_pred CC--CCC------------CCCC-----------CHHHHH----------------HHHHHHhhhcccCCCccceee--e
Q 006891 361 TV--ITL------------LPEP-----------HEDEIQ----------------FILDAISDYLNVKVRRTDVLS--A 397 (627)
Q Consensus 361 ~~--~~~------------~~~~-----------~~~~~~----------------~ll~~~~~~~~~~l~~~~i~~--~ 397 (627)
.. ... ++.. ...-.. ..++.+++++ |.++..|+.. .
T Consensus 340 ~~~~e~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~-P~~~~~d~~~~~~ 418 (497)
T PTZ00383 340 LPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLKDARKIV-PSLTRKDLRYCVG 418 (497)
T ss_pred chHHhCCCCCchHHHHHhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHhcCHHHHHHHHHHhC-CCCCHHHeeeccC
Confidence 21 001 0110 011112 2345566888 8999888886 4
Q ss_pred eeeeeccccCCCCCCCCCCc-ccceeeecCCCeEEEecC--hhhhHHHHHHHHHHHHHHcCC
Q 006891 398 WSGIRPLAMDPSAKNTESIS-RDHVVCEDFPGLVTITGG--KWTTYRSMAEDAVNAAIKSGK 456 (627)
Q Consensus 398 ~aG~Rp~~~d~~~~~~~~~~-r~~~i~~~~~gl~~~~Gg--~~t~~~~~Ae~~~~~~~~~~~ 456 (627)
++|+||...|.. ...+. ..-+| ...+|.+...|- +-||+..-|+.=+..|++.++
T Consensus 419 ~~GvR~Q~i~~~---~~~L~~g~~~i-~~~~~~i~~~~~spgast~l~~~~~d~~~~~~~~~ 476 (497)
T PTZ00383 419 YGGVRPQLIDKV---SKKLLLGEGKI-DPGKGIIFNITPSPGATTCLGNAESDMREICERLG 476 (497)
T ss_pred CCceEEEEEECC---CCeEecCceEE-ecCCCcEEeccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 669999887632 11110 11111 134675556554 478999999999999998854
No 26
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.93 E-value=1.5e-24 Score=230.21 Aligned_cols=318 Identities=19% Similarity=0.166 Sum_probs=210.9
Q ss_pred HHHHHHHCCCeEEEEcCC-CCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHH----HHHHHHHHHHH-CCCCccc
Q 006891 86 VALDAATRGLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFH----ALEERKQVIRN-APHLSNA 159 (627)
Q Consensus 86 ~A~~La~~G~~V~lvEk~-~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~-~~~~~~~ 159 (627)
+||+|+++|++|+|||++ .+++|+|++|+|+++....+.... ...+... +......+.+. .+...+.
T Consensus 1 ~A~~La~~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~-------~~~l~~~~~~~a~~l~~~l~~~~~~~~~~~ 73 (381)
T TIGR03197 1 TAYSLARRGWQVTLYEQDEAPAQGASGNPQGALYPLLSADDNP-------LSRFFLAAFLYARRFYRQLAEAGFPFDHEW 73 (381)
T ss_pred ChHHHHhCCCeeEEEeCCCcccccCCCChhheeeeecCCCCCH-------HHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 599999999999999996 588999999999998654322110 1111111 11111111111 0111122
Q ss_pred CCCccccCCchhHHHHHHHHHHHHHhhcCCCCC--CccccCHHHHHhhCCccccccccCCceEEEEecCceechHHHHHH
Q 006891 160 LPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLH--LSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDSRLNVG 237 (627)
Q Consensus 160 ~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~--~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~~~~l~~~ 237 (627)
.+.+.......+.. .+.... ...+++ ..++++.+++...++.. ....+.+.+.+|++||..++..
T Consensus 74 ~G~L~~a~~~~~~~------~l~~~~-~~~~~~~~~~~~l~~~e~~~~~~~~------~~~gal~~~~~g~idp~~~~~~ 140 (381)
T TIGR03197 74 CGVLQLAYDEKEAE------RLQKLL-EQLGFPEELARWVDAEQASQLAGIP------LPYGGLFFPQGGWLSPPQLCRA 140 (381)
T ss_pred CceEEecCChHHHH------HHHHHH-HhcCCCHHHheeCCHHHHHHhcCCC------CCCCceEeCCCcccChHHHHHH
Confidence 22222222211111 111111 123433 24578888888876532 2333445667999999999999
Q ss_pred HHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCCCceecCcce
Q 006891 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQPMICPSSGV 317 (627)
Q Consensus 238 l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~~~i~p~kG~ 317 (627)
|.+.+.+ |++++++++|++|..++ + + ++|++ .+|. .++||.||+|+|+|+..+.++. ..++.|.||+
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~-~-~-~~v~t---~~g~--~~~a~~vV~a~G~~~~~l~~~~----~~pi~p~rg~ 207 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDG-E-G-WQLLD---ANGE--VIAASVVVLANGAQAGQLAQTA----HLPLRPVRGQ 207 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcC-C-e-EEEEe---CCCC--EEEcCEEEEcCCcccccccccc----cCCccccccc
Confidence 9999999 99999999999998865 3 3 33443 2332 5899999999999999987753 3468999999
Q ss_pred EEEecCCCCCCCcceecccCCCCcEEEEEecC-CcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHhhhcccCCC-----c
Q 006891 318 HIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLNVKVR-----R 391 (627)
Q Consensus 318 ~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~~-g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~-----~ 391 (627)
++.++..........++. .+ .|++|.. |.+++|.|.+..+ .+..++.+.++.+++.+.++| |.+. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~--~~---~y~~p~~~g~~~iG~t~~~~~--~~~~~~~~~~~~~~~~~~~~~-P~l~~~~~~~ 279 (381)
T TIGR03197 208 VSHLPATEALSALKTVLC--YD---GYLTPANNGEHCIGASYDRND--DDLALREADHAENLERLAECL-PALAWASEVD 279 (381)
T ss_pred eeeccCCCcccccCceEe--CC---ceecccCCCceEeecccCCCC--CCCCcCHHHHHHHHHHHHHhC-cccchhhccC
Confidence 988864321111112221 12 3788864 6788998876532 345667888999999999999 7876 5
Q ss_pred cceeeeeeeeeccccCCCCCCCCCCcccceeeec---------------------------CCCeEEEecC---hhhhHH
Q 006891 392 TDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED---------------------------FPGLVTITGG---KWTTYR 441 (627)
Q Consensus 392 ~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~---------------------------~~gl~~~~Gg---~~t~~~ 441 (627)
.++.+.|+|+||.++| +.|+|+.. .+|++.++|. +++++|
T Consensus 280 ~~~~~~~~G~r~~t~D----------~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap 349 (381)
T TIGR03197 280 ISALQGRVGVRCASPD----------HLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAP 349 (381)
T ss_pred ccccCceEEEeccCCC----------cCccCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccchHHHHHH
Confidence 7899999999999998 35666643 4689999885 499999
Q ss_pred HHHHHHHHHHHHc
Q 006891 442 SMAEDAVNAAIKS 454 (627)
Q Consensus 442 ~~Ae~~~~~~~~~ 454 (627)
.+|+.++++|.+.
T Consensus 350 ~~g~~la~~i~~~ 362 (381)
T TIGR03197 350 LAAEILAAQICGE 362 (381)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998643
No 27
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.93 E-value=5.5e-24 Score=205.36 Aligned_cols=351 Identities=21% Similarity=0.211 Sum_probs=217.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC----CCeEEEEcCCCC-CCCCcCCCCCcccchhhhhhhhhccCCcchHHH-HHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATR----GLRVGLVEREDF-SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKL-VFHAL 143 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~----G~~V~lvEk~~~-~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~-~~~~l 143 (627)
..+||||||||..|+++|+.|.++ |++|+|||+++. .+.++.-| -||+..+.+.-... ++.+ ..+++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lS----vGGi~QQFSlpEnI---qmSLF~a~Fl 157 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLS----VGGICQQFSLPENI---QMSLFTAEFL 157 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeee----ecceeeecccchhh---hhhhHHHHHH
Confidence 368999999999999999999764 799999999974 33333333 35554332211111 1111 11222
Q ss_pred HHHHHHHHH----CCCC-cccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCc
Q 006891 144 EERKQVIRN----APHL-SNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSL 218 (627)
Q Consensus 144 ~~~~~~~~~----~~~~-~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~ 218 (627)
.....-+.. .+.+ ..+.+.+.... ..+...+... ..+....|. ..+.++++++..+||++ +.+++
T Consensus 158 r~a~ehl~~~d~~~vdl~f~P~GyL~LA~-ee~ae~m~s~----~kvQ~e~GA-k~eLls~d~Lt~rfPwl----ntegV 227 (509)
T KOG2853|consen 158 RNAREHLGILDSEQVDLNFFPTGYLRLAS-EEEAEMMRSN----SKVQNELGA-KVELLSPDELTKRFPWL----NTEGV 227 (509)
T ss_pred HHHHHhhccccCCCCCcccCCCceEEEcc-hhhHHHHHHh----HHHHHhhcc-hhcccCHHHHhhhCCcc----cccce
Confidence 211111111 0111 11111111111 1111111111 122234555 37899999999999999 66554
Q ss_pred e-EEE-EecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEc---------CCC------CeEEEEEEEecCCCcEE
Q 006891 219 K-GAV-VYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKD---------EAS------NRIIGARIRNNLSGKEF 281 (627)
Q Consensus 219 ~-g~~-~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~---------~~g------~~v~gV~~~d~~~g~~~ 281 (627)
. +.+ ...+|++||+.+...+.+.+...|+.+. +-+|+.++.+ ++| .++.||.++- .++...
T Consensus 228 aLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m-~d~~~r 305 (509)
T KOG2853|consen 228 ALASLGVEKEGWFDPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRM-NDALAR 305 (509)
T ss_pred eeeecccccccccCHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEec-CchhcC
Confidence 3 333 2468999999999999999999999986 4578888764 222 1456666652 334456
Q ss_pred EEEcCeEEeccCCChHHHhhhhcCC-------CCCceecCcceEEEecCCCCC-CCcceecccCCCCcEEEEEecC--Cc
Q 006891 282 DTYAKVVVNAAGPFCDSVRKLADQN-------VQPMICPSSGVHIVLPDYYSP-EGMGLIVPKTKDGRVVFMLPWL--GR 351 (627)
Q Consensus 282 ~i~A~~VV~AtG~~s~~l~~~~g~~-------~~~~i~p~kG~~lv~~~~~~~-~~~~~~~~~~~dg~~~~~~P~~--g~ 351 (627)
.+++..+|||+|+|+.++++++|+. .+.+|.|+|..++++..+..| .+.++++. ...+|+...+ ++
T Consensus 306 ~vk~al~V~aAGa~s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~PGl~~Pl~iD----psG~f~Rrdglg~n 381 (509)
T KOG2853|consen 306 PVKFALCVNAAGAWSGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVPGLDTPLTID----PSGVFFRRDGLGGN 381 (509)
T ss_pred ceeEEEEEeccCccHHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCCCCCCCceeEC----CCccEEEecCCCCc
Confidence 8999999999999999999999754 356789999987777554444 34555543 3357777743 67
Q ss_pred EEEecCCCC--CCCCCCCCCCHHHH-HHHHHHHhhhcccCCCccceeeeeeeeecccc-CCCCCCCCCCcccceeeecC-
Q 006891 352 TVAGTTDSD--TVITLLPEPHEDEI-QFILDAISDYLNVKVRRTDVLSAWSGIRPLAM-DPSAKNTESISRDHVVCEDF- 426 (627)
Q Consensus 352 ~~iG~t~~~--~~~~~~~~~~~~~~-~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~-d~~~~~~~~~~r~~~i~~~~- 426 (627)
.++|.+... .++..+..++.+.+ +.+.-.+...+ |.+....|.++|+|++.... | .+.+|+.++
T Consensus 382 fl~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~nRV-P~fetakVqsaWaGyyD~NtfD----------~ngViG~HP~ 450 (509)
T KOG2853|consen 382 FLCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLANRV-PAFETAKVQSAWAGYYDHNTFD----------DNGVIGEHPL 450 (509)
T ss_pred eecccCCccccCCCccccccChHHHHhhhhHHHHhcc-cccceeeeeehhcccccccccc----------cCCcccCCcc
Confidence 777766332 12222333443322 23333333334 78888999999999997643 3 256677654
Q ss_pred -CCeEEEecC---hhhhHHHHHHHHHHHHHHc
Q 006891 427 -PGLVTITGG---KWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 427 -~gl~~~~Gg---~~t~~~~~Ae~~~~~~~~~ 454 (627)
.||+.++|. ++..++++|+.++++|.+.
T Consensus 451 y~Nly~atGFsghGvqqs~avgRAiaElIldG 482 (509)
T KOG2853|consen 451 YTNLYMATGFSGHGVQQSPAVGRAIAELILDG 482 (509)
T ss_pred eeeeeeeecccccchhcchHHHHHHHHHHhcC
Confidence 588888773 3888889998888888753
No 28
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.92 E-value=8.5e-24 Score=220.23 Aligned_cols=342 Identities=23% Similarity=0.255 Sum_probs=238.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCe-EEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHH
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLR-VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~-V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (627)
..||||||||+.|+++||+||++|.+ ++++|+....+|++..+.|++.- ++.....+..+..... .+.+.+++...
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~-lr~~dv~~qlia~~~~-~l~~~leeEtg- 115 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQ-LFPSDVELQLIAHTSR-VLYRELEEETG- 115 (856)
T ss_pred cccEEEEcCCchhHHHHHHHHHccccceEEEeeeeeccccccccccceee-ccCCchhHHHHHHHHH-HHHHHHHHhcC-
Confidence 48999999999999999999999999 55666677888999888888754 3322211000000011 11111111111
Q ss_pred HHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhh---cCCCCCCccccCHHHHHhhCCccccccccCCceEEE-Eec
Q 006891 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVA---GRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAV-VYY 225 (627)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~---~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~-~~~ 225 (627)
....+.+.-.+.+. ..+.. +..+..+. ..+|+. .+.|++++..+++|.+ +.+++.+++ .+.
T Consensus 116 --l~tGwiq~G~~~lA-s~~~R-------~de~kR~~S~g~a~g~e-~~lLsPee~~~~~pLL----n~d~v~g~Ly~P~ 180 (856)
T KOG2844|consen 116 --LHTGWIQNGGIFLA-SNRQR-------LDEYKRLMSRGKAHGVE-SELLSPEETQELFPLL----NVDDVYGGLYSPG 180 (856)
T ss_pred --CCcceecCCceEEe-cCHHH-------HHHHHHHHHhhhhccce-eeecCHHHHHHhCccc----chhHheeeeecCC
Confidence 11122222222221 11111 12222221 246665 8999999999999999 778887775 578
Q ss_pred CceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcC
Q 006891 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~ 305 (627)
||.+||..++.+|+..|++.|+.|+.+++|++|....+ +..||.+. .+.|++..||||||.|+.++-.|.+.
T Consensus 181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--~~~gVeT~------~G~iet~~~VNaaGvWAr~Vg~m~gv 252 (856)
T KOG2844|consen 181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD--KFGGVETP------HGSIETECVVNAAGVWAREVGAMAGV 252 (856)
T ss_pred CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC--Cccceecc------CcceecceEEechhHHHHHhhhhcCC
Confidence 99999999999999999999999999999999988764 56688653 24799999999999999999999986
Q ss_pred CCCCceecCcceEEEecCCCCCCC--cceecccCCCCcEEEEEecCCcEEEecCCCCC--C-------CCCCCCCCHHHH
Q 006891 306 NVQPMICPSSGVHIVLPDYYSPEG--MGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDT--V-------ITLLPEPHEDEI 374 (627)
Q Consensus 306 ~~~~~i~p~kG~~lv~~~~~~~~~--~~~~~~~~~dg~~~~~~P~~g~~~iG~t~~~~--~-------~~~~~~~~~~~~ 374 (627)
+ .++.|.+.++++..+-..-.. .+.+. ..|++ +|+.-+.+.++.|+..... . ...-..++.+.+
T Consensus 253 k--vPL~p~~H~YvvT~~IeGi~s~t~p~ir--D~DgS-vylR~~~~gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F 327 (856)
T KOG2844|consen 253 K--VPLVPMHHAYVVTSRIEGVSSLTRPNIR--DLDGS-VYLRQQGDGILFGGYESNPIFTEGVPPGFATGLQEPDWDHF 327 (856)
T ss_pred c--ccceeeeeeEEEecccCCccCCCcccee--cccce-EEEEecCCceeccccccCceeccccCCccccccccccHhhh
Confidence 5 468899988888754321111 11222 34554 6777788888888765321 0 001123567778
Q ss_pred HHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeecC--CCeEEEecCh---hhhHHHHHHHHHH
Q 006891 375 QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGGK---WTTYRSMAEDAVN 449 (627)
Q Consensus 375 ~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~~--~gl~~~~Gg~---~t~~~~~Ae~~~~ 449 (627)
...++.+.+.+ |.+....|.+.-.|.-.++|| ..|++++++ .|++..+|.+ +..+=.+++.+++
T Consensus 328 ~~hlesai~r~-P~l~k~~i~~~v~gpe~ftPD----------~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~la~ 396 (856)
T KOG2844|consen 328 EPHLEAAIERV-PVLEKAGIKSLVNGPETFTPD----------HLPIMGESPEVRGYWVACGFNSAGLSFGGGCGKYLAE 396 (856)
T ss_pred HHHHHHHHHhC-chhhhcCccceecCccccCCc----------cccccCCCccccceEEeecCCccceeccCchhHHHHH
Confidence 88888888888 899999999999999999998 367888754 6999998865 8888899999999
Q ss_pred HHHHc
Q 006891 450 AAIKS 454 (627)
Q Consensus 450 ~~~~~ 454 (627)
+|+..
T Consensus 397 wi~~g 401 (856)
T KOG2844|consen 397 WIIHG 401 (856)
T ss_pred HhhcC
Confidence 98854
No 29
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.91 E-value=6.4e-22 Score=191.77 Aligned_cols=350 Identities=13% Similarity=0.098 Sum_probs=216.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC--CCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~--g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (627)
....||+|||+|+.|+++||+|+++|.+++|+|+.+++. |+|..-+.++... |.+. ...+++.++++++
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~--Y~e~-------~Y~~m~~ea~e~W 75 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPA--YAED-------KYMSMVLEAYEKW 75 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechh--hhhH-------HHHHHHHHHHHHH
Confidence 346899999999999999999999999999999997644 4554444444322 1111 1234455666655
Q ss_pred HHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCC-ccccccccCCceEEEEec
Q 006891 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFP-TLAMKAKDRSLKGAVVYY 225 (627)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p-~l~~~~~~~~~~g~~~~~ 225 (627)
..+..........-..++-. ..+....-..+...+ ...++. .+.++.+++.++|| ... -+++..|...+.
T Consensus 76 ~~~~~~~g~~~~~~t~~~~~----~~~e~~~~~sv~~~~-k~~~l~-h~~l~seEvrk~fP~~~~---l~d~~~G~~n~~ 146 (399)
T KOG2820|consen 76 RNLPEESGVKLHCGTGLLIS----GDPERQRLDSVAANL-KRKGLA-HSVLISEEVRKRFPSNIP---LPDGWQGVVNES 146 (399)
T ss_pred HhChhhhceeecccceeeec----CcHHHHHHHHHHHHH-hhhhhh-hhhhhHHHHHHhCCCCcc---CCcchhhccccc
Confidence 44322222111111000000 111101111222222 134543 78899999999999 431 245666777788
Q ss_pred CceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhh-h
Q 006891 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL-A 303 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~-~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~-~ 303 (627)
.|++++...+.++...+++.|+.|+.+.+|+.+...+ +| ..++|.+ .+|. .+.||.+|+++|+|...+++. +
T Consensus 147 gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~-~~v~V~T---t~gs--~Y~akkiI~t~GaWi~klL~~~~ 220 (399)
T KOG2820|consen 147 GGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEG-NHVSVQT---TDGS--IYHAKKIIFTVGAWINKLLPTSL 220 (399)
T ss_pred ccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCC-ceeEEEe---ccCC--eeecceEEEEecHHHHhhcCccc
Confidence 9999999999999999999999999999999887543 23 3444544 3343 689999999999999999874 3
Q ss_pred cCCCCCceecCcceEEEecC----C--CCCCCcceecccCCCC-cEEEEEecCC---cEEE--ecC--CCCCCC-CCCCC
Q 006891 304 DQNVQPMICPSSGVHIVLPD----Y--YSPEGMGLIVPKTKDG-RVVFMLPWLG---RTVA--GTT--DSDTVI-TLLPE 368 (627)
Q Consensus 304 g~~~~~~i~p~kG~~lv~~~----~--~~~~~~~~~~~~~~dg-~~~~~~P~~g---~~~i--G~t--~~~~~~-~~~~~ 368 (627)
+.. .++.|.+=....... + ....+..+++++..+. -+.|..|..+ ..-+ +-. ..+.+. .....
T Consensus 221 ~~~--~Pv~~i~ltvcywk~~~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~ 298 (399)
T KOG2820|consen 221 AIG--FPVAPIQLTVCYWKTKKNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKR 298 (399)
T ss_pred ccC--CccceeEeehhhheeecCCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCccc
Confidence 333 234443321111100 0 1111223444444554 3455566432 2211 111 111111 11122
Q ss_pred CCHHHHHHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeecC--CCeEEEecC---hhhhHHHH
Q 006891 369 PHEDEIQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDF--PGLVTITGG---KWTTYRSM 443 (627)
Q Consensus 369 ~~~~~~~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~~--~gl~~~~Gg---~~t~~~~~ 443 (627)
+....++.+....+++. |.++....+.+..|++..|+| .+|+|+..+ .|++...|+ +|..+|.+
T Consensus 299 s~~~~idl~~~f~~~~~-p~l~~~~p~~t~~C~YT~TpD----------~~FviD~~P~~~Nv~Vg~G~SGHGFK~aP~i 367 (399)
T KOG2820|consen 299 SLPKAIDLMRRFLRTFG-PDLDDRSPINTKMCMYTDTPD----------ANFVIDKHPQYDNVFVGGGGSGHGFKFAPNI 367 (399)
T ss_pred CcchHHHHHHHHHHHhC-ccccCCCcceeeEEEeeCCCC----------cCeeeecCCCcccEEEecCCCCcceeecchH
Confidence 33446666666667777 899888888999999999999 479998754 577777665 39999999
Q ss_pred HHHHHHHHHHcC
Q 006891 444 AEDAVNAAIKSG 455 (627)
Q Consensus 444 Ae~~~~~~~~~~ 455 (627)
++.+++++.+.+
T Consensus 368 Gk~lae~~~~~~ 379 (399)
T KOG2820|consen 368 GKYLAEMAMGDL 379 (399)
T ss_pred HHHHHHHhhhcc
Confidence 999999998763
No 30
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.84 E-value=8.6e-20 Score=172.95 Aligned_cols=334 Identities=16% Similarity=0.130 Sum_probs=205.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC------CeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHH
Q 006891 71 PLDILVIGGGATGCGVALDAATRG------LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALE 144 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G------~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~ 144 (627)
...|+||||||.|+++||.|++.+ +.|+|+|+..+++|+||..+|++.. +-.......+....+++..+.-.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~--wc~~s~~~~La~lsfkLh~~Lsd 87 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAK--WCQPSIIQPLATLSFKLHEELSD 87 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHh--hhCCcccchhhHHHHHHHHHHHH
Confidence 468999999999999999999998 8999999999999999999988751 11111111222223333222111
Q ss_pred HHHHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEe
Q 006891 145 ERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY 224 (627)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~ 224 (627)
+.....+. -.+.+..+.-..+|.. +. -...+ ...+|+.++.+... ..+ +-..
T Consensus 88 eydGvnnw---gYRaltTws~ka~~en----------~~--p~k~p-egldWi~~e~v~~~-ssi-----------G~t~ 139 (380)
T KOG2852|consen 88 EYDGVNNW---GYRALTTWSCKADWEN----------TN--PAKVP-EGLDWIQRERVQKC-SSI-----------GSTN 139 (380)
T ss_pred hhcCcccc---cceeeeEEEEEeeccc----------CC--cccCC-cchhhhhhHHhhhh-eec-----------cCCC
Confidence 11110000 0000000000000000 00 00111 12344444332211 111 1124
Q ss_pred cCceechHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhh
Q 006891 225 YDGQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (627)
Q Consensus 225 ~~g~~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~ 303 (627)
..++++|..++..++..|.+.| |+++++ +|.++. ++.+ ++.+|-.+. ..+......++.||+++|+|+..|....
T Consensus 140 ttaqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~-dEk~-r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskllp~~ 215 (380)
T KOG2852|consen 140 TTAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVS-DEKH-RINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLLPFT 215 (380)
T ss_pred ccceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEee-cccc-cccccchhh-hcCceEEeeeeEEEEecCCCchhhcccc
Confidence 5689999999999999999886 888775 677876 3345 777775532 1122346677899999999999987753
Q ss_pred cCCCCCceecCcceEEEecCCCCCCC-cceec-ccCCCC-----cEEEEEecCCcEEEecCCCCC---CCCCCCCCCHHH
Q 006891 304 DQNVQPMICPSSGVHIVLPDYYSPEG-MGLIV-PKTKDG-----RVVFMLPWLGRTVAGTTDSDT---VITLLPEPHEDE 373 (627)
Q Consensus 304 g~~~~~~i~p~kG~~lv~~~~~~~~~-~~~~~-~~~~dg-----~~~~~~P~~g~~~iG~t~~~~---~~~~~~~~~~~~ 373 (627)
+|...|-..++++....+.. ..++. -.+.|| .-+|..+.....++|.+++.. ++.++....++.
T Consensus 216 ------rIsglrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~npek 289 (380)
T KOG2852|consen 216 ------RISGLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPEDSDDVFVNPEK 289 (380)
T ss_pred ------ccceeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcccccceeCHHH
Confidence 24444433444543332221 11111 112333 123444444566788887653 244566788999
Q ss_pred HHHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeecCCCeEEEecCh---hhhHHHHHHHHHHH
Q 006891 374 IQFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVTITGGK---WTTYRSMAEDAVNA 450 (627)
Q Consensus 374 ~~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~~~gl~~~~Gg~---~t~~~~~Ae~~~~~ 450 (627)
+++|-+.+..+. +.++...+....+++-|.+.++ .-|+|+....|+|.++|+. +|.+|+.+..++++
T Consensus 290 i~~Lk~~a~~v~-s~l~ks~v~~~qacfLP~sn~t---------g~PvIget~sg~yVaagHscWGItnaPaTG~~mAEl 359 (380)
T KOG2852|consen 290 IIELKEMADLVS-SELTKSNVLDAQACFLPTSNIT---------GIPVIGETKSGVYVAAGHSCWGITNAPATGKCMAEL 359 (380)
T ss_pred HHHHHHHHHHhh-hhhccchhhhhhhccccccCCC---------CCceEeecCCceEEeecccccceecCcchhHHHHHH
Confidence 999988888877 7888888999999999998764 4789998778999999985 79999999999999
Q ss_pred HHHc
Q 006891 451 AIKS 454 (627)
Q Consensus 451 ~~~~ 454 (627)
+++.
T Consensus 360 lldg 363 (380)
T KOG2852|consen 360 LLDG 363 (380)
T ss_pred Hhcc
Confidence 8865
No 31
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.83 E-value=4.5e-19 Score=169.30 Aligned_cols=319 Identities=16% Similarity=0.114 Sum_probs=203.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-------CeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHH
Q 006891 71 PLDILVIGGGATGCGVALDAATRG-------LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHAL 143 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G-------~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l 143 (627)
..+|+|||+|++|+++|+.+.+.+ .+|.+++-..+..-+|-..+|++...... ... .....++.+...
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~-~~~----~~~~~~w~k~tf 77 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSD-GTP----QEINRQWGKDTF 77 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCC-CCc----HHHHHHHHHHHH
Confidence 368999999999999998888854 68999987766666777777776544211 000 001122222222
Q ss_pred HHHHHHHH--HCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEE
Q 006891 144 EERKQVIR--NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGA 221 (627)
Q Consensus 144 ~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~ 221 (627)
+....+.+ .++.. --.+++.+..++......-...+. .-+..++.++.+++. .+|.. ...+
T Consensus 78 ~~l~~l~rs~~a~~a---GV~l~sg~~ls~~e~~~~~~~~w~-----diV~~fr~l~e~EL~-~f~~~--------~~~G 140 (342)
T KOG3923|consen 78 NYLAHLARSEEAGEA---GVCLVSGHILSDSESLDDQQRSWG-----DIVYGFRDLTERELL-GFPDY--------STYG 140 (342)
T ss_pred HHHHHHhcccccccc---ceEEeeeeeeccCCCchhhhhhHH-----hhhhhhhcCCHHHhc-CCCCc--------cccc
Confidence 22222221 11110 001111111111000000000011 112346778887765 44432 3345
Q ss_pred EEecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhh
Q 006891 222 VVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRK 301 (627)
Q Consensus 222 ~~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~ 301 (627)
..+.....++..++..|.+.+.++|+++. .-+|.+|..-. .-.+|.||||||.|+..|+.
T Consensus 141 ~~~Tt~~sE~~~ylpyl~k~l~e~Gvef~-~r~v~~l~E~~-------------------~~~~DVivNCtGL~a~~L~g 200 (342)
T KOG3923|consen 141 IHFTTYLSEGPKYLPYLKKRLTENGVEFV-QRRVESLEEVA-------------------RPEYDVIVNCTGLGAGKLAG 200 (342)
T ss_pred eeEEEeeccchhhhHHHHHHHHhcCcEEE-EeeeccHHHhc-------------------cCCCcEEEECCccccccccC
Confidence 66777777889999999999999999985 34565553210 12479999999999988865
Q ss_pred hhcCCCCCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHH
Q 006891 302 LADQNVQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAI 381 (627)
Q Consensus 302 ~~g~~~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~ 381 (627)
. ..++|.||+.+.++. |..+.+++. .+.+ .|++|-.+.+.+|++.++.++ +..++.++...|++..
T Consensus 201 D------d~~yPiRGqVl~V~A---pWvkhf~~~--D~~~-ty~iP~~~~V~lGg~~Q~g~w--~~ei~~~D~~dIl~rc 266 (342)
T KOG3923|consen 201 D------DDLYPIRGQVLKVDA---PWVKHFIYR--DFSR-TYIIPGTESVTLGGTKQEGNW--NLEITDEDRRDILERC 266 (342)
T ss_pred C------cceeeccceEEEeeC---CceeEEEEe--cCCc-cEEecCCceEEEccccccCcc--cCcCChhhHHHHHHHH
Confidence 2 239999999999874 445556654 2222 599999999999999887544 6788999999999999
Q ss_pred hhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcc-cceeeec-CCC--eEEEecC---hhhhHHHHHHHHHHHHHHc
Q 006891 382 SDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISR-DHVVCED-FPG--LVTITGG---KWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 382 ~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r-~~~i~~~-~~g--l~~~~Gg---~~t~~~~~Ae~~~~~~~~~ 454 (627)
.++. |.|...+|++.|+|+||..+.- | +..+... .+. +++-.|. ++|+++.+|-+++.++...
T Consensus 267 ~aL~-P~l~~a~ii~E~vGlRP~Rk~v---------RlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~~~ 336 (342)
T KOG3923|consen 267 CALE-PSLRHAEIIREWVGLRPGRKQV---------RLEAELRTRGGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVLDA 336 (342)
T ss_pred HHhC-cccccceehhhhhcccCCCCce---------eeeeeeecCCCccceeEeeccCCCCceecccchHHHHHHHHHHH
Confidence 9999 9999999999999999986430 1 1111111 122 2455553 4999999999999998876
Q ss_pred C
Q 006891 455 G 455 (627)
Q Consensus 455 ~ 455 (627)
+
T Consensus 337 l 337 (342)
T KOG3923|consen 337 L 337 (342)
T ss_pred h
Confidence 3
No 32
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.74 E-value=2.9e-15 Score=153.68 Aligned_cols=333 Identities=15% Similarity=0.108 Sum_probs=194.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCC-CCCCCc--CCCCCcccchhhhhhhhhccCC-cchHHH---HH
Q 006891 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVERED-FSSGTS--SRSTKLIHGGVRYLEKAVFNLD-YGQLKL---VF 140 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~-~~~g~S--~~~~~~i~~g~~~~~~~~~~~~-~~~~~~---~~ 140 (627)
.++|||+|||||+|++.++.|++. .++|.|+||-+ ++..+| ..|+|..|.++--+.......+ .-++.. +.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In 81 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN 81 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence 469999999999999999999986 78999999975 554444 4678888877532211000000 001111 11
Q ss_pred HHHHHHHHHHH-H--CCC------CcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCcccc-CHHHHHhhCCccc
Q 006891 141 HALEERKQVIR-N--APH------LSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYY-SAQESAELFPTLA 210 (627)
Q Consensus 141 ~~l~~~~~~~~-~--~~~------~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l-~~~~~~~~~p~l~ 210 (627)
+..+....++. . ... ++.+.+.+.-.....+..+++ +-|+.+....-.+..++. +++++.+..|.+.
T Consensus 82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLk---kR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm 158 (488)
T PF06039_consen 82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLK---KRYEALKEHPLFPGMEFSEDPEQIAEWAPLVM 158 (488)
T ss_pred HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHH---HHHHHHhcCCCCCCcEEccCHHHHHhhCCeec
Confidence 11111111111 1 111 222332222222233344433 234444433334445666 5778888888873
Q ss_pred cccccCCceEEEE-ecCceechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeE
Q 006891 211 MKAKDRSLKGAVV-YYDGQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVV 288 (627)
Q Consensus 211 ~~~~~~~~~g~~~-~~~g~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~V 288 (627)
..++.....++.. ....-+|-..++..|.+.+++. |++++++++|++|.+.++| -|-|.+.|..+|+..+++|+.|
T Consensus 159 ~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg--~W~v~~~~~~~~~~~~v~a~FV 236 (488)
T PF06039_consen 159 EGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDG--RWEVKVKDLKTGEKREVRAKFV 236 (488)
T ss_pred CCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCC--CEEEEEEecCCCCeEEEECCEE
Confidence 2222222233333 3344588899999999999988 9999999999999998876 2446777767788889999999
Q ss_pred EeccCCChHHHhhhhcCCC--CCceecCcceEEEecCCCC-CCCcceecccCCCCcEEEEEec------CC--cEEEecC
Q 006891 289 VNAAGPFCDSVRKLADQNV--QPMICPSSGVHIVLPDYYS-PEGMGLIVPKTKDGRVVFMLPW------LG--RTVAGTT 357 (627)
Q Consensus 289 V~AtG~~s~~l~~~~g~~~--~~~i~p~kG~~lv~~~~~~-~~~~~~~~~~~~dg~~~~~~P~------~g--~~~iG~t 357 (627)
++.+|+++-.|++..|++. .....|+.|+.++.+.+.. ..+.+-++-+..-|..-+-+|+ +| .+++||+
T Consensus 237 fvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPHlDtRiidGk~~llFGP~ 316 (488)
T PF06039_consen 237 FVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSVPHLDTRIIDGKKSLLFGPF 316 (488)
T ss_pred EECCchHhHHHHHHcCChhhcccCCCcccceEEecCCHHHHHHhcceeeeeCCCCCCCccCccCCchhcCCCcceeecCc
Confidence 9999999999999888631 3456799999988864321 0011111111111111112221 12 3567777
Q ss_pred CCCCC----------CCCCCCCC------------HHHH-----------HHHHHHHhhhcccCCCccceeeeeeeeecc
Q 006891 358 DSDTV----------ITLLPEPH------------EDEI-----------QFILDAISDYLNVKVRRTDVLSAWSGIRPL 404 (627)
Q Consensus 358 ~~~~~----------~~~~~~~~------------~~~~-----------~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~ 404 (627)
....+ ......++ .+-. +.-++.+++++ |.....|..-..+|.|+.
T Consensus 317 Agfs~KfLK~GS~~Dl~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~~s~~~r~~~Lr~f~-P~a~~~DW~l~~AGqRvQ 395 (488)
T PF06039_consen 317 AGFSPKFLKNGSYLDLFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVLQSKEDRMEALRKFY-PSAKPEDWELITAGQRVQ 395 (488)
T ss_pred cccchHHhcCCcHHHHHhhcCcccHHHHHHHHhhhhhHHHHHHHhhccCHHHHHHHHHHhC-ccCChhceEEEecCceee
Confidence 54211 00000000 1111 22445677788 888888888889999998
Q ss_pred ccCC
Q 006891 405 AMDP 408 (627)
Q Consensus 405 ~~d~ 408 (627)
..+.
T Consensus 396 iIkk 399 (488)
T PF06039_consen 396 IIKK 399 (488)
T ss_pred EEec
Confidence 8653
No 33
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.71 E-value=5.5e-16 Score=169.77 Aligned_cols=194 Identities=14% Similarity=0.201 Sum_probs=115.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCccc-chhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH-GGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
+.++||||||+|++|+++|+.|++.|++|+||||....+|+|..+++.+. .+..+........ +.... +.+.
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d---~~~~~---~~~~- 131 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIAD---SNDKF---YEET- 131 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCC---CHHHH---HHHH-
Confidence 34699999999999999999999999999999999877777766655442 2222221111111 11111 1111
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
++.......+ .+...+........+|+. ..|++ +..+. .... ......+.+.++
T Consensus 132 --~~~~~~~~d~---------~l~~~~~~~s~~~i~wl~-~~Gv~-~~~~~------~~~g-------~~~~r~~~p~~g 185 (506)
T PRK06481 132 --LKGGGGTNDK---------ALLRYFVDNSASAIDWLD-SMGIK-LDNLT------ITGG-------MSEKRTHRPHDG 185 (506)
T ss_pred --HHhcCCCCCH---------HHHHHHHhccHHHHHHHH-HcCce-Eeecc------cCCC-------CCCCceeccCCC
Confidence 1111111000 001111111223345554 34543 11110 0000 001111223344
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
......++..|.+.+++.|++++++++|++|+.++ | +|+||++.. .+++...++||.||+|+|+|+.+
T Consensus 186 ~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g-~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 186 SAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKD-G-KVTGVKVKI-NGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred CCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-C-EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccC
Confidence 44556788889999999999999999999998765 6 899998865 34455689999999999999855
No 34
>PRK07121 hypothetical protein; Validated
Probab=99.63 E-value=5.9e-15 Score=161.70 Aligned_cols=206 Identities=23% Similarity=0.244 Sum_probs=116.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccc--hhhhhhhhhccCCcchHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHG--GVRYLEKAVFNLDYGQLKLVFHALEER 146 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~--g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (627)
+.++||||||+|++|+++|++|++.|++|+||||....+|+|..+++++.. +.+.+....... +.....+.+..
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d---~~~~~~~~~~~- 93 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFED---SPENMYAYLRV- 93 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCC---CHHHHHHHHHH-
Confidence 346999999999999999999999999999999998878888887776542 444332211111 11111111111
Q ss_pred HHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccc----ccc--------c
Q 006891 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLA----MKA--------K 214 (627)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~----~~~--------~ 214 (627)
.......+ ..-..+........+|+. ..|++........ ...+|.-. ... .
T Consensus 94 -----~~~~~~d~---------~l~~~~~~~s~~~i~wl~-~~Gv~f~~~~~~~--~~~~p~~~~~~~~~g~~~~~~~~~ 156 (492)
T PRK07121 94 -----AVGPGVDE---------EKLRRYCEGSVEHFDWLE-GLGVPFERSFFPE--KTSYPPNDEGLYYSGNEKAWPFAE 156 (492)
T ss_pred -----HhCCCCCH---------HHHHHHHHccHHHHHHHH-HcCcEEEeccCCC--cccCCCCCcccccchhhcchhhhh
Confidence 11111000 000111111122334443 3444311100000 00011000 000 0
Q ss_pred -cCCceEEEE-ecCcee-chHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEc-CeEEe
Q 006891 215 -DRSLKGAVV-YYDGQM-NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVN 290 (627)
Q Consensus 215 -~~~~~g~~~-~~~g~~-~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A-~~VV~ 290 (627)
......... ...+.. +...++..|.+.+++.|++|+++++|++|+.+++| +|+||++.+ +++...|+| |.||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~--~~~~~~i~a~k~VVl 233 (492)
T PRK07121 157 IAKPAPRGHRVQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG-RVVGVEARR--YGETVAIRARKGVVL 233 (492)
T ss_pred ccCCcccceecCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC-CEEEEEEEe--CCcEEEEEeCCEEEE
Confidence 000000111 111111 45678889999999999999999999999987667 899999864 455568999 99999
Q ss_pred ccCCChHH
Q 006891 291 AAGPFCDS 298 (627)
Q Consensus 291 AtG~~s~~ 298 (627)
|||+|+.+
T Consensus 234 AtGg~~~N 241 (492)
T PRK07121 234 AAGGFAMN 241 (492)
T ss_pred CCCCcCcC
Confidence 99998853
No 35
>PRK06185 hypothetical protein; Provisional
Probab=99.57 E-value=4.5e-13 Score=143.73 Aligned_cols=147 Identities=19% Similarity=0.139 Sum_probs=89.9
Q ss_pred echHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
+....+...|.+.+.+. |++++++++|+++..++ + ++++|.+.. .+| ..+++||.||.|+|.+| .+++.+++..
T Consensus 105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~-~v~~v~~~~-~~g-~~~i~a~~vI~AdG~~S-~vr~~~gi~~ 179 (407)
T PRK06185 105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-G-RVTGVRART-PDG-PGEIRADLVVGADGRHS-RVRALAGLEV 179 (407)
T ss_pred eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-C-EEEEEEEEc-CCC-cEEEEeCEEEECCCCch-HHHHHcCCCc
Confidence 44456777787777664 89999999999999876 4 788887754 233 25799999999999999 5888887653
Q ss_pred CCceecCcceEEEecCCCCCCCcceecccCCCCcEEEEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHhhhc
Q 006891 308 QPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYL 385 (627)
Q Consensus 308 ~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~dg~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 385 (627)
...+.++..+.+..+..+......+....++..+.++|..+...++.+..... .....+...+.+.+.+.+.+
T Consensus 180 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 252 (407)
T PRK06185 180 --REFGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRGDYWQCGYVIPKGG---YAALRAAGLEAFRERVAELA 252 (407)
T ss_pred --cccCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCCCeEEEEEEecCCC---chhhhhhhHHHHHHHHHHhC
Confidence 34455555444432211111111111122344567788766666665543211 12233444566666666665
No 36
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.55 E-value=1.3e-13 Score=149.22 Aligned_cols=192 Identities=18% Similarity=0.194 Sum_probs=113.0
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CeEEEEcCCCCCCCCcCCCCCcccch-hhhhhhhhccCCcchHHHHHHHHHHHHHHH
Q 006891 73 DILVIGGGATGCGVALDAATRG-LRVGLVEREDFSSGTSSRSTKLIHGG-VRYLEKAVFNLDYGQLKLVFHALEERKQVI 150 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G-~~V~lvEk~~~~~g~S~~~~~~i~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (627)
||||||+|++|+++|+.|+++| .+|+||||.+..+|+|..+++.+... ........... +.+...+.+ +
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~---~~~~~~~~~------~ 71 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIED---SPELFIKDT------L 71 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCC---CHHHHHHHH------H
Confidence 8999999999999999999999 99999999988888888877655422 21111110111 111111111 1
Q ss_pred HHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceec
Q 006891 151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230 (627)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~ 230 (627)
+.......+ .....+........+|+. .+++ ..... . ..+ ..........+.++..+
T Consensus 72 ~~~~~~~~~---------~l~~~~~~~~~~~i~wl~--~~~~-~~~~~---~--~~~------~~~~~~~~~~~~~g~~~ 128 (439)
T TIGR01813 72 KGGRGINDP---------ELVRILAEESADAVDWLQ--DGVG-ARLDD---L--IQL------GGHSVPRAHRPTGGAGS 128 (439)
T ss_pred HhcCCCCCH---------HHHHHHHhccHHHHHHHH--hCCC-eeecc---c--ccc------CCcCCCccccCCCCCCC
Confidence 111111100 000011111112234443 2222 11100 0 000 00001111223344456
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
...++..|.+.+++.|++++++++|++|+.+++| +|+||++.+ .++....+.+|.||+|+|+|+.+
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g-~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n 194 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQG-TVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSN 194 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCC-cEEEEEEEe-CCCeEEEEecceEEEecCCCCCC
Confidence 6788999999999999999999999999997667 899999875 34444567899999999999863
No 37
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=3.7e-13 Score=149.98 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=114.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||||||+|++|+++|+.|++.|++|+||||..+..+.|..+.|.+....... ...+.....+.
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~-------~~Ds~e~~~~d------ 76 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNM-------GEDDWRWHMYD------ 76 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCC-------CCCCHHHHHHH------
Confidence 45699999999999999999999999999999998776666655555443221100 01111111100
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccc-cccCCceEEEEecCc
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMK-AKDRSLKGAVVYYDG 227 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~-~~~~~~~g~~~~~~g 227 (627)
.++....++.+ ..-..+...+....+++. ..|++....-+.......+...... ...+......+..+
T Consensus 77 ~~~~g~~~~d~---------~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d- 145 (598)
T PRK09078 77 TVKGSDWLGDQ---------DAIEYMCREAPAAVYELE-HYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAAD- 145 (598)
T ss_pred HHHhccCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCcceecCCCceeecccCceecccCCCCccceeEecCC-
Confidence 00111111111 001111222223344554 4666521110100000000000000 00000001111111
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
.....++..|.+.+++.|+++++++.|++|+.+++| +|+||.+.+..+|+...|.|+.||+|||+++..
T Consensus 146 -~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 146 -RTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGG-VCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred -CCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence 123467888888899999999999999999987657 999999865456777789999999999999854
No 38
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.52 E-value=3.7e-13 Score=144.84 Aligned_cols=197 Identities=23% Similarity=0.225 Sum_probs=108.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchh-hhhhhhhccCCcchHHHHHHHHHHHHHHHH
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGV-RYLEKAVFNLDYGQLKLVFHALEERKQVIR 151 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (627)
||||||+|++|+++|+.|+++|++|+||||....+|+|..+++.+.... ..+...... .+... .+.+ +++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~---d~~~~---~~~~---~~~ 71 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIE---DSPEE---FFQD---IMA 71 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTT---CHHHH---HHHH---HHH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeeccccccccccc---ccccc---ccee---eec
Confidence 8999999999999999999999999999999876667766666554222 111110000 11111 1111 111
Q ss_pred HCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEe--cC---
Q 006891 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVY--YD--- 226 (627)
Q Consensus 152 ~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~--~~--- 226 (627)
.......+ .+...+........+++. ..+++....-........++.. .......+ .+
T Consensus 72 ~~~~~~~~---------~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~g~~~~~~~g~~-------~~~~~~~~~~~~~~~ 134 (417)
T PF00890_consen 72 AGGGLNDP---------DLVRAFVENSPEAIDWLE-ELGVPFRRDEDGPFAPTPFGGH-------SPRWRSPPGNPDPPF 134 (417)
T ss_dssp HTTT-S-H---------HHHHHHHHHHHHHHHHHH-HTT--B-BGTTSSBCEEEETTE-------SSTEEEEESSTTSSS
T ss_pred cccccccc---------chhhhhhhcccceehhhh-hhcccccccccccccccccCCc-------cccceeeeccccccc
Confidence 11111100 001112222233445554 2354421100000000000000 00001111 11
Q ss_pred -ceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 227 -GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 227 -g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
.......++..+.+.+++.|++|+++++|++|++++ + +|+||++.+..+|+...|+|+.||+|||.++.
T Consensus 135 ~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g-~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 135 GGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITED-G-RVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-T-EEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-C-ceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 112446788999999999999999999999999976 6 99999998656788889999999999999996
No 39
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.52 E-value=6.2e-12 Score=133.98 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=112.3
Q ss_pred CceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcC
Q 006891 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~ 305 (627)
...++...+...|++.|++.|++++..++|+.+..++++ .+.++ . .+. .+++||.||.|+|..+ .+.+.++.
T Consensus 89 ~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~-~~~~~-~----~~~-~e~~a~~vI~AdG~~s-~l~~~lg~ 160 (396)
T COG0644 89 GYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDG-VVVGV-R----AGD-DEVRAKVVIDADGVNS-ALARKLGL 160 (396)
T ss_pred eEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCc-EEEEE-E----cCC-EEEEcCEEEECCCcch-HHHHHhCC
Confidence 345677889999999999999999999999999998865 44333 2 122 6899999999999987 66677765
Q ss_pred CCCCceecCcceEEEecCCCCCCCccee-cc-cCCCCcEEEEEecCC-cEEEecCCCCCCCCCCCCCCHHHHHHHHHHHh
Q 006891 306 NVQPMICPSSGVHIVLPDYYSPEGMGLI-VP-KTKDGRVVFMLPWLG-RTVAGTTDSDTVITLLPEPHEDEIQFILDAIS 382 (627)
Q Consensus 306 ~~~~~i~p~kG~~lv~~~~~~~~~~~~~-~~-~~~dg~~~~~~P~~g-~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~ 382 (627)
....+-.-.-++.-++..+.......++ .+ ....+...|++|.++ ..-+|....... ....+. . +.++...
T Consensus 161 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~--~~~~~~---~-~~l~~f~ 234 (396)
T COG0644 161 KDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD--PSLSPF---L-ELLERFK 234 (396)
T ss_pred CCCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC--cCCCch---H-HHHHHHH
Confidence 5100000011222222211111111222 11 123345678999874 466776543221 111111 1 2222222
Q ss_pred hhc--ccCCCccceeeeeeeeeccccCCCCCCCCCCccccee-eecCCCeEEE-ecChhhhHHHHHHHHHHHHHHc
Q 006891 383 DYL--NVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVV-CEDFPGLVTI-TGGKWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 383 ~~~--~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i-~~~~~gl~~~-~Gg~~t~~~~~Ae~~~~~~~~~ 454 (627)
... .+.+....++..-+|.-|...-. ... +..+-++ ..+.-|+++. +|++...+-.-|+.+++.+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~ip~~g~~---~~~-~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~ 306 (396)
T COG0644 235 EHPAIRKLLLGGKILEYAAGGIPEGGPA---SRP-LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEA 306 (396)
T ss_pred hCcccchhccCCceEEEeeeecccCCcC---CCc-cccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 111 01111235666667777765221 110 2222222 2234565544 5556655556666666665554
No 40
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.52 E-value=1.9e-13 Score=153.11 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=117.0
Q ss_pred CCCCCCchHHHHHHHHhccCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC-CCCCcCCCCCcccchhhhhhhh
Q 006891 49 SKAVVPSRVVQESALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGGVRYLEKA 127 (627)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~-~~g~S~~~~~~i~~g~~~~~~~ 127 (627)
++|+...++....++. ++.++||||||+|++|+++|+.|++.|++|+||||... +.++|..+.|.+.....+..
T Consensus 16 ~~~~~~~~~~~~~~~~---~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~-- 90 (640)
T PRK07573 16 EKWDRYKFHLKLVNPA---NKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQN-- 90 (640)
T ss_pred hhhhhccccccccCCc---cccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccc--
Confidence 4566555555444444 45679999999999999999999999999999999754 44445444433321111100
Q ss_pred hccCCcchHHHHHHHHHHHHHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCC
Q 006891 128 VFNLDYGQLKLVFHALEERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFP 207 (627)
Q Consensus 128 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p 207 (627)
. ..+.... +.. .+.....++.+- .-..+........+++. ..|++..+..+..-....+.
T Consensus 91 -~---~Ds~~~~---~~d---~~~~g~~~~d~~---------lv~~l~~~s~~~i~wL~-~~GV~f~~~~~g~~~~~~~g 150 (640)
T PRK07573 91 -D---GDSVYRL---FYD---TVKGGDFRAREA---------NVYRLAEVSVNIIDQCV-AQGVPFAREYGGLLANRSFG 150 (640)
T ss_pred -c---CCCHHHH---HHH---HHHhcCCCCCHH---------HHHHHHHHHHHHHHHHH-hcCCccccCCCCceeccccC
Confidence 0 0111111 111 111111111100 01111222234455664 46665321111000000000
Q ss_pred ccccccccCCceEEEEecC--ceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEc
Q 006891 208 TLAMKAKDRSLKGAVVYYD--GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA 285 (627)
Q Consensus 208 ~l~~~~~~~~~~g~~~~~~--g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A 285 (627)
. ......++..+ |..--..+...|.+.+++.|++|++++.|++|+.++ | +|+||.+.+..+|....|.|
T Consensus 151 g-------hs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g-~V~GV~~~~~~~g~~~~i~A 221 (640)
T PRK07573 151 G-------AQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLVVVD-G-RARGIVARNLVTGEIERHTA 221 (640)
T ss_pred C-------cccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEEEEEEEeC-C-EEEEEEEEECCCCcEEEEEC
Confidence 0 00111111111 111011223556667778899999999999999875 6 99999997644666678999
Q ss_pred CeEEeccCCChHH
Q 006891 286 KVVVNAAGPFCDS 298 (627)
Q Consensus 286 ~~VV~AtG~~s~~ 298 (627)
|.||+|||+++..
T Consensus 222 kaVVLATGG~g~~ 234 (640)
T PRK07573 222 DAVVLATGGYGNV 234 (640)
T ss_pred CEEEECCCCcccC
Confidence 9999999998853
No 41
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.51 E-value=4.6e-13 Score=149.47 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=115.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||||||||++|+++|++|++.|++|+||||....+++|..+.|.+....... . ..+.....+-
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~----~---~Ds~e~~~~D------ 93 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNM----T---EDDWRWHAYD------ 93 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCC----C---CCCHHHHHHH------
Confidence 34699999999999999999999999999999999876666665554443211100 0 1122111110
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccc-cCCceEEEEecCc
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAK-DRSLKGAVVYYDG 227 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~-~~~~~g~~~~~~g 227 (627)
.++....++.+ .+-..+...+....++|. ..|++..+.-+.......+........ ........+..+
T Consensus 94 ~~~~g~~~~d~---------~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d- 162 (617)
T PTZ00139 94 TVKGSDWLGDQ---------DAIQYMCREAPQAVLELE-SYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAAD- 162 (617)
T ss_pred HHHHhCCCCCH---------HHHHHHHHHHHHHHHHHH-hcCCceEeCCCCcEeecccCcccccccCCCccceeeecCC-
Confidence 01111111111 011112222334445554 467653221110000000000000000 000000001111
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
-....++..|.+.+++.|+++++++.+++|+.+++| +|.||.+.+..+|+...+.||.||+|||+++..
T Consensus 163 -~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 163 -RTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDG-ECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred -CcHHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCC-EEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 124578889999999999999999999999985457 999999866457777789999999999998743
No 42
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.51 E-value=5.5e-13 Score=147.80 Aligned_cols=197 Identities=16% Similarity=0.089 Sum_probs=111.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 68 ~~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
++.++||||||+|++|+++|+.+++.|.+|+||||.....+.|..+.|.+...+ ...... ..+.+...+...
T Consensus 2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~--~~~~~~---~Ds~e~~~~d~~--- 73 (566)
T PRK06452 2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYI--PGNSDP---NDNPDYMTYDTV--- 73 (566)
T ss_pred CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhc--cccCCC---cccHHHHHHHHH---
Confidence 356799999999999999999999999999999999765555555544332110 000000 011111111100
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
.....+..+ ..-..+........+||. ..|++..+.-+.......+.. .......+..+
T Consensus 74 ---~~g~~~~d~---------~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~r~~~~~~- 132 (566)
T PRK06452 74 ---KGGDYLVDQ---------DAAELLSNKSGEIVMLLE-RWGALFNRQPDGRVAVRYFGG-------QTYPRTRFVGD- 132 (566)
T ss_pred ---HhhccCCCH---------HHHHHHHHHHHHHHHHHH-HCCCccccCCCCcEeccCCcC-------ccCCeeEecCC-
Confidence 001111100 001112222223445554 456652110000000000100 00111111111
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
.....++..|.+.+.+.|+++++++.+++|+.++ | +|+||.+.+..+++...++||.||+|||+++
T Consensus 133 -~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 133 -KTGMALLHTLFERTSGLNVDFYNEWFSLDLVTDN-K-KVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred -CCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 1235677888888888899999999999999875 7 9999999874456666899999999999987
No 43
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.50 E-value=5.5e-13 Score=148.85 Aligned_cols=202 Identities=13% Similarity=0.066 Sum_probs=115.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||||||+|++|+++|++|++.|++|+||||..+..+.|..+.|.+....... ...+.....+-.
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~-------~~Ds~e~~~~Dt----- 115 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-------TEDDWRWHMYDT----- 115 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCC-------CCCCHHHHHHHH-----
Confidence 34689999999999999999999999999999999876666665554443211100 011222111100
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCC-ceEEE--Eec
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRS-LKGAV--VYY 225 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~-~~g~~--~~~ 225 (627)
++....++.+ .+-..+........+++. ..|++..+.-+.......+... .... ..+.. ...
T Consensus 116 -~~~g~~~~d~---------~lv~~l~~~s~~~i~~L~-~~Gv~F~~~~~g~~~~~~~gg~----s~~~~~~g~~~r~~~ 180 (635)
T PLN00128 116 -VKGSDWLGDQ---------DAIQYMCREAPKAVIELE-NYGLPFSRTEDGKIYQRAFGGQ----SLDFGKGGQAYRCAC 180 (635)
T ss_pred -HHhhCCCCCH---------HHHHHHHHhHHHHHHHHH-hCCCccccCCCCceeecccccc----ccccCCCcceeeeec
Confidence 0111111111 001112222223445554 4666532110000000000000 0000 00000 001
Q ss_pred CceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
.+-.....++..|.+.+.+.|++|+.++.+++|+.+++| +|.||.+.+..+|+...|.||.||+|||+++..
T Consensus 181 ~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 181 AADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDG-ACQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCC-EEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 111124568888988898999999999999999987557 999999876456777789999999999999754
No 44
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.50 E-value=6.5e-13 Score=147.63 Aligned_cols=200 Identities=14% Similarity=0.085 Sum_probs=114.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
..++||||||+|++|+++|+.|++.|++|+||||..+..|.|..+.|.+...... . ...+.+...+..
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~---~----~~Ds~e~~~~D~----- 72 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGN---T----HEDNWEWHMYDT----- 72 (588)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCC---C----CCCCHHHHHHHH-----
Confidence 3468999999999999999999999999999999976665555554433211100 0 001222111111
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccC----CceEEEEe
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR----SLKGAVVY 224 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~----~~~g~~~~ 224 (627)
++....++.+ ..-..+...+....++|. ..|++..+.-+.......+... ... .....++.
T Consensus 73 -~~~g~~~~d~---------~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~----~~~~~~~~~~r~~~~ 137 (588)
T PRK08958 73 -VKGSDYIGDQ---------DAIEYMCKTGPEAILELE-HMGLPFSRLDDGRIYQRPFGGQ----SKNFGGEQAARTAAA 137 (588)
T ss_pred -HHHhCCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeecccccc----cccccccccceeEec
Confidence 1111111111 011122222334445554 4676532110000000000000 000 00011111
Q ss_pred cCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 225 ~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
.+ -....++..|.+.+.+.|+++++++.+++|+.+++| +|.||.+.+..+|+...++||.||+|||+++..
T Consensus 138 ~~--~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 138 AD--RTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDG-AVVGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred CC--CCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCC-EEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 11 123567888888888899999999999999987557 999999866456776789999999999999853
No 45
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.50 E-value=8.3e-13 Score=146.98 Aligned_cols=72 Identities=26% Similarity=0.302 Sum_probs=60.1
Q ss_pred ceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEc-CeEEeccCCChHHHhhh
Q 006891 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSVRKL 302 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A-~~VV~AtG~~s~~l~~~ 302 (627)
..+++..++..|.+.+++.|++|+++++|++|+.++ | +|+||++.+ ++....++| |.||+|||+|+.++..+
T Consensus 212 ~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g-~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 212 HLVNGNALVARLLKSAEDLGVRIWESAPARELLRED-G-RVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-C-EEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 345677899999999999999999999999999875 6 999998864 334457899 99999999999876543
No 46
>PRK12839 hypothetical protein; Provisional
Probab=99.50 E-value=4.3e-13 Score=148.44 Aligned_cols=70 Identities=26% Similarity=0.294 Sum_probs=57.0
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHh
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~ 300 (627)
+++..++..|.+.+++.|++|+++++|++|+.+++| +|+||++.+ .++....+.+|.||+|||+|+.+..
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g-~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~~ 280 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNG-RVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDVD 280 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCC-cEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCHH
Confidence 467788899999999999999999999999987557 999999875 4454333345999999999997653
No 47
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.50 E-value=5.3e-13 Score=145.54 Aligned_cols=190 Identities=24% Similarity=0.234 Sum_probs=107.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC--CCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF--SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~--~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
.++||||||+|++|+++|+.|+++|.+|+||||.+. .+|+|..+.++......... .. .........++.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~-~~--~~~~~~~~~~~~~~--- 76 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQD-VL--VGAYPEEEFWQDLL--- 76 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchh-hc--cccccHHHHHHHHH---
Confidence 458999999999999999999999999999999863 56667666653221110000 00 00011111111111
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
+.......+ .+...+........+|+. ..|++ +....... ..+ . . ....+..+
T Consensus 77 ---~~~~~~~~~---------~~~~~~~~~s~~~~~wl~-~~Gv~-~~~~~~~~---~~~-~------~---~~~~~~g~ 129 (466)
T PRK08274 77 ---RVTGGRTDE---------ALARLLIRESSDCRDWMR-KHGVR-FQPPLSGA---LHV-A------R---TNAFFWGG 129 (466)
T ss_pred ---HhhCCCCCH---------HHHHHHHHcCHHHHHHHH-hCCce-EeecCCCc---ccc-C------C---CCeeecCC
Confidence 111111000 000011111112334443 34543 21111000 000 0 0 00111111
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
...++..|.+.+++.|++++++++|++|+.++ + +|+||++.+ .+++...++||.||+|||+|..+
T Consensus 130 ---g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g-~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n 194 (466)
T PRK08274 130 ---GKALVNALYRSAERLGVEIRYDAPVTALELDD-G-RFVGARAGS-AAGGAERIRAKAVVLAAGGFESN 194 (466)
T ss_pred ---HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-C-eEEEEEEEc-cCCceEEEECCEEEECCCCCCCC
Confidence 46788889999999999999999999999865 6 899998853 34555689999999999988743
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.50 E-value=2.8e-12 Score=131.05 Aligned_cols=200 Identities=17% Similarity=0.152 Sum_probs=109.5
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
.++...+...+.+.+.+.|++++++++|+++..+++ .+ .+.+. ++ ..+++||.||.|+|.++ .+.+.++...
T Consensus 87 ~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~-~~~~~---~~-~~~~~a~~vv~a~G~~s-~~~~~~~~~~ 158 (295)
T TIGR02032 87 VIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RV-VVIVR---GG-EGTVTAKIVIGADGSRS-IVAKKLGLRK 158 (295)
T ss_pred EEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EE-EEEEc---Cc-cEEEEeCEEEECCCcch-HHHHhcCCCC
Confidence 356678888999999999999999999999988764 33 23332 22 34799999999999998 5777766542
Q ss_pred CCceecCcceEEEecCCC--CCCCc-ceecc-cCCCCcEEEEEecCC-cEEEecCCCCCCCCCCCCCCHHHHHHHHHHHh
Q 006891 308 QPMICPSSGVHIVLPDYY--SPEGM-GLIVP-KTKDGRVVFMLPWLG-RTVAGTTDSDTVITLLPEPHEDEIQFILDAIS 382 (627)
Q Consensus 308 ~~~i~p~kG~~lv~~~~~--~~~~~-~~~~~-~~~dg~~~~~~P~~g-~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~ 382 (627)
.. .....+....++.+. ...+. .+.+. ...++..+|++|..+ ...+|.+..... . ..+.++.++...
T Consensus 159 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~---~----~~~~~~~~~~~~ 230 (295)
T TIGR02032 159 EP-RELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE---E----GEDLKKYLKDFL 230 (295)
T ss_pred CC-cceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC---C----CCCHHHHHHHHH
Confidence 11 111112222332221 11111 12221 112356789999864 466776543211 1 123344444444
Q ss_pred hhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeee-cCCCeEEE-ecChhhhHHHHHHHHHH
Q 006891 383 DYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVTI-TGGKWTTYRSMAEDAVN 449 (627)
Q Consensus 383 ~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~-~~~gl~~~-~Gg~~t~~~~~Ae~~~~ 449 (627)
+.+ |.+....+...+.+..|..... ....++.++.. +.-+.++. +|.++.++-.-|..+++
T Consensus 231 ~~~-~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~ 293 (295)
T TIGR02032 231 ARR-PELKDAETVEVIGAPIPIGRPD-----DKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAE 293 (295)
T ss_pred HhC-cccccCcEEeeeceeeccCCCC-----CccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHh
Confidence 445 5566666777777777764221 11112222222 33344444 33345555555554443
No 49
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.49 E-value=6.4e-13 Score=146.65 Aligned_cols=63 Identities=30% Similarity=0.429 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEc-CeEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A-~~VV~AtG~~s~~ 298 (627)
..++..|.+.+++.|++|+++++|++|+.++ | +|+||++.+ +++...|.| |.||+|||+|..+
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~-g-~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG-G-RVTGAVVDH--RGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC-C-EEEEEEEEE--CCcEEEEEcCCEEEEecCCcccc
Confidence 4567788888999999999999999999764 7 999998864 455567777 6899999999865
No 50
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.49 E-value=1.3e-12 Score=145.60 Aligned_cols=66 Identities=29% Similarity=0.409 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEc-CeEEeccCCChHHHhh
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDSVRK 301 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A-~~VV~AtG~~s~~l~~ 301 (627)
..++..|.+.+++.|++|+++++|++|+.++ + +|+||++.+ .++ ...+.+ +.||+|||.|+.+...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g-~V~GV~~~~-~~~-~~~i~a~k~VVlAtGg~~~n~~~ 280 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-G-RVVGARVID-AGG-ERRITARRGVVLACGGFSHDLAR 280 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-C-EEEEEEEEc-CCc-eEEEEeCCEEEEcCCCccchHHH
Confidence 4577778888999999999999999999875 6 999999875 223 356788 5899999999976643
No 51
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.49 E-value=7e-13 Score=147.60 Aligned_cols=205 Identities=14% Similarity=0.135 Sum_probs=113.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 68 NSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 68 ~~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
++.++||||||+|++|+++|+.|++.|++|+||||.....+.|..+.|.+........ ..+..... .
T Consensus 9 ~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~-------~ds~~~~~---~--- 75 (591)
T PRK07057 9 PRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMS-------EDNWHYHF---Y--- 75 (591)
T ss_pred ccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCccccccccc-------ccChhHhH---H---
Confidence 3567999999999999999999999999999999987766666555443332211000 01111100 0
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
..+.....++.+ ..-..+...+....+++. ..|++....-+.......+..-................+
T Consensus 76 dt~~~g~~~~d~---------~~v~~~~~~a~~~i~~L~-~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~- 144 (591)
T PRK07057 76 DTIKGSDWLGDQ---------DAIEFMCREAPNVVYELE-HFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAAD- 144 (591)
T ss_pred HHHHhcCCCCCH---------HHHHHHHHHHHHHHHHHH-hcCCcceeCCCCcEeeeccCCccccccCCccceeeecCC-
Confidence 001111111111 011112222334445553 456542110000000000000000000000011111111
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
.....++..|.+.+.+.|++++.++.+++|+.+++| +|.||.+.+..+++...+.||.||+|||+++..
T Consensus 145 -~tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 145 -RTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDADG-DVLGVTALEMETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred -CChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCC-eEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence 123568888888888999999999999999987557 999999876456666688999999999998753
No 52
>PLN02697 lycopene epsilon cyclase
Probab=99.47 E-value=3e-11 Score=131.38 Aligned_cols=205 Identities=12% Similarity=0.104 Sum_probs=114.4
Q ss_pred ceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
+.++...+...|.+.+.+.|+++ .+++|+++..++++ +..++.. +| .++.|+.||.|+|.++..+.......
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~--~~vv~~~---dG--~~i~A~lVI~AdG~~S~rl~~~~~~~ 258 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG--LRLVACE---DG--RVIPCRLATVASGAASGRLLQYEVGG 258 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc--EEEEEEc---CC--cEEECCEEEECCCcChhhhhccccCC
Confidence 35778889999999999999998 67899999886643 3323332 34 37999999999999996554321111
Q ss_pred CCCceecCcceEEEecC-CCCCCCcceecc-c-----------CCCCcEEEEEecC-CcEEE-ecCCCCCCCCCCCCCCH
Q 006891 307 VQPMICPSSGVHIVLPD-YYSPEGMGLIVP-K-----------TKDGRVVFMLPWL-GRTVA-GTTDSDTVITLLPEPHE 371 (627)
Q Consensus 307 ~~~~i~p~kG~~lv~~~-~~~~~~~~~~~~-~-----------~~dg~~~~~~P~~-g~~~i-G~t~~~~~~~~~~~~~~ 371 (627)
.........|+.+.++. +..+. ..+++. . ......+|++|.. +..+| ++.... .+..+.
T Consensus 259 ~~~~~Q~a~Gi~ve~~~~~~d~~-~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~-----~~~l~~ 332 (529)
T PLN02697 259 PRVCVQTAYGVEVEVENNPYDPS-LMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLAS-----KDAMPF 332 (529)
T ss_pred CCcccEEEEEEEEEecCCCCCcc-hheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeecc-----CCCCCH
Confidence 11235566777776654 22222 222211 0 0112578999986 56677 654211 111223
Q ss_pred HHHH-HHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeee-cCCCeEEE-ecChhhhHHHHHHHHH
Q 006891 372 DEIQ-FILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVTI-TGGKWTTYRSMAEDAV 448 (627)
Q Consensus 372 ~~~~-~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~-~~~gl~~~-~Gg~~t~~~~~Ae~~~ 448 (627)
+.++ .|.+.+.+. .+....|++.-.|+.|+..+. .. . .+.++.. +..|+++- +|+.+..+..-|..++
T Consensus 333 ~~l~~~L~~~l~~~---Gi~~~~i~~~E~g~iPm~g~~--~~---~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A 403 (529)
T PLN02697 333 DLLKKRLMSRLETM---GIRILKTYEEEWSYIPVGGSL--PN---T-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYA 403 (529)
T ss_pred HHHHHHHHHHHHhC---CCCcceEEEEEeeeecCCCCC--cc---c-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHH
Confidence 3333 333333331 344566788888888985321 11 1 1223333 34466654 5666644444444444
Q ss_pred HHHHHc
Q 006891 449 NAAIKS 454 (627)
Q Consensus 449 ~~~~~~ 454 (627)
+.|.+.
T Consensus 404 ~~ia~~ 409 (529)
T PLN02697 404 SVIARI 409 (529)
T ss_pred HHHHHH
Confidence 444444
No 53
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.47 E-value=6.2e-13 Score=147.68 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcC-eEEeccCCChHH
Q 006891 233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCDS 298 (627)
Q Consensus 233 ~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~-~VV~AtG~~s~~ 298 (627)
.++..+.+.+++.|++|+++++|++|+.+++| +|+||++.. +++...|+|+ .||+|||+|..+
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g-~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N 277 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDG-AVVGAVVER--EGRTLRIGARRGVILATGGFDHD 277 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCC-cEEEEEEEe--CCcEEEEEeceeEEEecCcccCC
Confidence 35556777788899999999999999998668 999999864 5666789996 699999999854
No 54
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.47 E-value=1.6e-12 Score=129.05 Aligned_cols=70 Identities=29% Similarity=0.285 Sum_probs=57.1
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecC------CCcEEEEEcCeEEeccCCChHHH
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL------SGKEFDTYAKVVVNAAGPFCDSV 299 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~------~g~~~~i~A~~VV~AtG~~s~~l 299 (627)
+++..+...|.+.+.+.|++++++++|.++..+++| +|.||.+.+.. ..+...++||.||+|||.++...
T Consensus 101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g-~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDP-RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCC-cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 567889999999999999999999999999987666 89999875310 11236899999999999999544
No 55
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.47 E-value=9.5e-13 Score=147.72 Aligned_cols=65 Identities=26% Similarity=0.295 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
..++..|.+.+.+.|++|++++.|++|+.++ | +|.||++.+..+|+...+.||.||+|||+|+..
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-K-RCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-C-EEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 3566778888889999999999999999865 6 999999987557777788999999999998854
No 56
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.46 E-value=1.6e-12 Score=142.85 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcC-eEEeccCCChHH
Q 006891 232 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~-~VV~AtG~~s~~ 298 (627)
..++..+.+.+.+. |++|+++++|++|+.++ | +|+||++.. +++...|+|+ .||+|||+|..+
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g-~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~n 237 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVED-G-RVVGAVVER--GGERRRVRARRGVLLAAGGFEQN 237 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-C-EEEEEEEEE--CCcEEEEEeCceEEEeCCCccCC
Confidence 35667777776664 99999999999999874 7 999998864 5666789995 899999999644
No 57
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.46 E-value=1.8e-12 Score=143.13 Aligned_cols=195 Identities=15% Similarity=0.116 Sum_probs=110.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||||||+|++|+++|+.|++.|.+|+||||....+|+|..+.|.+...... ..+.....+.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~---------~ds~e~~~~d------ 78 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDP---------GDSPEAHVAD------ 78 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCC---------CCCHHHHHHH------
Confidence 3469999999999999999999999999999999987766666555443321100 0111111111
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCce
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~ 228 (627)
.+.....++.+- .-..+........+++. ..|++....-+..-....+.. ...... .+..+.
T Consensus 79 ~~~~g~g~~d~~---------~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~G~~~~~~~~g-------~~~~r~-~~~~~d 140 (541)
T PRK07804 79 TLVAGAGLCDPD---------AVRSLVAEGPRAVRELV-ALGARFDESPDGRWALTREGG-------HSRRRI-VHAGGD 140 (541)
T ss_pred HHHhcCCCCCHH---------HHHHHHHHHHHHHHHHH-HcCCccccCCCCcEeeeccCC-------eecCee-EecCCC
Confidence 001111111110 01111222223345554 356542110000000000000 000001 111112
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec---CCCcEEEEEcCeEEeccCCChH
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~---~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
.....+...|.+.+++.|+++++++.|++|+.+++| +|.||.+.+. .++....+.||.||+|||+++.
T Consensus 141 ~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 141 ATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG-AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC-eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 234678888888888999999999999999987657 9999988632 1222357899999999999874
No 58
>PLN02815 L-aspartate oxidase
Probab=99.46 E-value=1.2e-12 Score=144.74 Aligned_cols=194 Identities=15% Similarity=0.135 Sum_probs=111.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||||||+|++|+++|+.|++.| +|+||||....+|+|..+.|.+...... ..+.....+..
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~---------~Ds~e~~~~d~----- 91 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDP---------SDSVESHMRDT----- 91 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCC---------CCCHHHHHHHH-----
Confidence 55699999999999999999999999 9999999988777776665544321110 01111111111
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCce
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~ 228 (627)
+.....++.+ ..-..+...+....++|. ..|++....-+..-....+.. ......+.. +.
T Consensus 92 -~~~g~~~~d~---------~lv~~~~~~s~e~i~~L~-~~Gv~F~~~~~g~~~~~~~gg-------~s~~R~~~~--~d 151 (594)
T PLN02815 92 -IVAGAFLCDE---------ETVRVVCTEGPERVKELI-AMGASFDHGEDGNLHLAREGG-------HSHHRIVHA--AD 151 (594)
T ss_pred -HHhccCCCcH---------HHHHHHHHHHHHHHHHHH-HhCCeeeecCCCCccccCCCC-------CccCceeec--CC
Confidence 0111111110 011112222334445554 456542110000000000000 000001111 11
Q ss_pred echHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCe--EEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNR--IIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~--v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
.....++..|.+.+.+. |+++++++.+++|+.+++|.+ |+||.+.+..+|....+.||.||+|||+++.
T Consensus 152 ~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 152 MTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 23456778888888765 899999999999998644413 8999987645676678899999999999874
No 59
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=2.3e-12 Score=143.51 Aligned_cols=195 Identities=16% Similarity=0.091 Sum_probs=110.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHHH
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVI 150 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (627)
.+||||||+|++|+++|+.|++.|++|+||||..+..++|..+.|.+....... ... .+.....+. .+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~---~~~---Ds~e~~~~d------~~ 70 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTK---GEG---DSPWIHFDD------TV 70 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcC---CCC---CCHHHHHHH------HH
Confidence 479999999999999999999999999999999887777766655543221100 000 111111110 11
Q ss_pred HHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceec
Q 006891 151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230 (627)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~ 230 (627)
.....++.+ ..-..+........+++. ..|++..+.-+.......+..- ..... ...+...
T Consensus 71 ~~g~~~~d~---------~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~-------~~~R~--~~~~~~t 131 (589)
T PRK08641 71 YGGDFLANQ---------PPVKAMCEAAPGIIHLLD-RMGVMFNRTPEGLLDFRRFGGT-------LHHRT--AFAGATT 131 (589)
T ss_pred HhcCCcCCH---------HHHHHHHHHHHHHHHHHH-HcCCCcccCCCCcEeeeccCCe-------ecccc--cccCCCc
Confidence 111111111 001111222223344553 4565421110000000000000 00000 0111123
Q ss_pred hHHHHHHHHHHHHHcC----CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 231 DSRLNVGLALTAALAG----AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~G----v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
...++..|.+.+.+.+ ++++.++.+++|+.+++| +|.||.+.+..+++...+.||.||+|||+++.
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEG-VCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCC-EEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 4567777877776544 789999999999987557 99999998744666567899999999999885
No 60
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.45 E-value=1.8e-12 Score=144.47 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=112.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (627)
.++||||||+|++|+++|++|++. ++|+||||..+..++|+.+.|.+....... .........+ ..
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~-------~~D~~e~~~~------d~ 69 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANV-------EEDNWEWHTF------DT 69 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCC-------CCCCHHHHHH------HH
Confidence 468999999999999999999986 999999999877766666654443221100 0111111110 01
Q ss_pred HHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccC----CceEEEEec
Q 006891 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDR----SLKGAVVYY 225 (627)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~----~~~g~~~~~ 225 (627)
+.....++.+ ..-..+...+....+++. ..|++..+..+.......++.. ... ......+..
T Consensus 70 ~~~g~~~~d~---------~~v~~~~~~~~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~----s~~~~~~~~~r~~~~~ 135 (583)
T PRK08205 70 VKGGDYLVDQ---------DAAEIMAKEAIDAVLDLE-KMGLPFNRTPEGKIDQRRFGGH----TRDHGKAPVRRACYAA 135 (583)
T ss_pred HHhhcCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCccccCCCCceeecccccc----cccccCCCccceeccC
Confidence 1111111110 011112222233345554 4666522211111101111111 000 000011111
Q ss_pred CceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC---CCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA---SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~---g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
+ .....++..|.+.+++.|+++++++.|++|+.+++ | +|.||.+.+..+++...|.||.||+|||+++..
T Consensus 136 ~--~tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 136 D--RTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGP-VAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred C--CCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCC-cEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 1 12456788888889999999999999999998653 6 899998865456665678999999999998854
No 61
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.44 E-value=2.4e-12 Score=144.11 Aligned_cols=196 Identities=20% Similarity=0.184 Sum_probs=111.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||||||+|++|+++|+.|++.|++|+||||..+..++|..++|.+........ ...+.....+ .
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~------~~ds~~~~~~---D--- 73 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVN------PKDNWQVHFR---D--- 73 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCC------CCCCHHHHHH---H---
Confidence 456999999999999999999999999999999998777767666554443221100 0011111111 0
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHH-hhCCccccccccCCceEEEEecCc
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~-~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
.+.....+..+ . +-..+...+....+++. ..|++. .......+. ..+.. .......+. +
T Consensus 74 ~~~~g~~l~d~--------~-~v~~~~~~s~~~i~~L~-~~Gv~f-~~~~~g~~~~~~~gg-------~~~~r~~~~--~ 133 (626)
T PRK07803 74 TMRGGKFLNNW--------R-MAELHAKEAPDRVWELE-TYGALF-DRTKDGRISQRNFGG-------HTYPRLAHV--G 133 (626)
T ss_pred HHHHhccCCcH--------H-HHHHHHHHhHHHHHHHH-HCCCce-EecCCCceeeeecCC-------cccCeEEec--C
Confidence 00111111110 0 00111111223334554 466652 211100000 00000 000001111 1
Q ss_pred eechHHHHHHHHHHHHHc--------C-----CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCC
Q 006891 228 QMNDSRLNVGLALTAALA--------G-----AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~--------G-----v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~ 294 (627)
......++..|.+.+++. | +++++++.|++|+.++ | +|.||.+.+..+++...+.|+.||+|||+
T Consensus 134 ~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 134 DRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-G-RIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred CCcHHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 112356777787777766 7 9999999999999865 6 89999876545666678999999999999
Q ss_pred ChHH
Q 006891 295 FCDS 298 (627)
Q Consensus 295 ~s~~ 298 (627)
++..
T Consensus 212 ~~~~ 215 (626)
T PRK07803 212 IGKS 215 (626)
T ss_pred ccCC
Confidence 7644
No 62
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.44 E-value=2.8e-12 Score=142.03 Aligned_cols=193 Identities=22% Similarity=0.243 Sum_probs=107.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC-CCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~-~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
+.++||||||+|++|+++|+.+ +.|.+|+||||... .+|+|..+.+.+...... ..+.....+.+
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~---------~d~~~~~~~d~---- 70 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNP---------EDSFEKHFEDT---- 70 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCC---------CCCHHHHHHHH----
Confidence 4569999999999999999999 99999999999865 445555554433211100 01111111111
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
+.....+..+ ..-..+........+++. ..|++..+.-+. .... .+. .........+..+
T Consensus 71 --~~~~~~~~d~---------~lv~~~~~~s~~~i~~L~-~~Gv~f~~~~~g-~~~~-~~~-----~g~~~~r~~~~~~- 130 (543)
T PRK06263 71 --MKGGAYLNDP---------KLVEILVKEAPKRLKDLE-KFGALFDRTEDG-EIAQ-RPF-----GGQSFNRTCYAGD- 130 (543)
T ss_pred --HHHhcCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCcceeCCCC-ceee-ccc-----CCeEcCeEEECCC-
Confidence 0111111110 001111111223344453 456542110000 0000 000 0000000111111
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
.....++..|.+.+++.|+++++++.|++|+.++++ +|+||.+.+..+++...|+||.||+|||+++.
T Consensus 131 -~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 131 -RTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENR-EVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCc-EEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 123567788888888899999999999999987655 69999886544566678999999999999874
No 63
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.43 E-value=3.2e-12 Score=142.31 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=108.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
.++||||||||++|+++|++|++. |++|+||||..+.++.|..++|.+........ . ........+ .
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~----~--~ds~e~~~~---d-- 70 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVD----P--EDSWEAHAF---D-- 70 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCC----C--CCCHHHHHH---H--
Confidence 358999999999999999999987 48999999997655555444433322211000 0 011111110 0
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHH-hhCCccccccccCCceEEEEecC
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESA-ELFPTLAMKAKDRSLKGAVVYYD 226 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~-~~~p~l~~~~~~~~~~g~~~~~~ 226 (627)
.+.....++.+ .....+........+++. ..|++. ......... ..+.. .......+..+
T Consensus 71 -~~~~~~~l~d~---------~~v~~l~~~a~~~i~~L~-~~Gv~f-~~~~~g~~~~~~~gg-------~~~~r~~~~~~ 131 (575)
T PRK05945 71 -TVKGSDYLADQ---------DAVAILTQEAPDVIIDLE-HLGVLF-SRLPDGRIAQRAFGG-------HSHNRTCYAAD 131 (575)
T ss_pred -HHHHhCCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCce-EECCCCcEeeccccc-------cccCeeEecCC
Confidence 01111111111 001111222223334443 456652 111100000 00000 00001111111
Q ss_pred ceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
.....++..|.+.+.+.|+++++++.|++|+.++ | +|.||.+.+..+++...+.|+.||+|||+++..
T Consensus 132 --~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 132 --KTGHAILHELVNNLRRYGVTIYDEWYVMRLILED-N-QAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred --CChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 1235678888888888999999999999999865 6 899998755345655679999999999998753
No 64
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.43 E-value=2.6e-12 Score=153.06 Aligned_cols=202 Identities=22% Similarity=0.256 Sum_probs=115.4
Q ss_pred HHHHhccCCCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCccc-chhhhhhhhhccCCcchHHHH
Q 006891 61 SALIAANNSNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIH-GGVRYLEKAVFNLDYGQLKLV 139 (627)
Q Consensus 61 ~~~~~~~~~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~-~g~~~~~~~~~~~~~~~~~~~ 139 (627)
.+|. ++.++||||||+|++|+++|+++++.|.+|+||||....+|+|..+++.++ .+.+++...... ....
T Consensus 402 ~~i~---~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~---D~~~-- 473 (1167)
T PTZ00306 402 KRIA---GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVL---DGGK-- 473 (1167)
T ss_pred cccc---cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhccc---ccHH--
Confidence 4554 577899999999999999999999999999999999877777766655443 233332211000 0111
Q ss_pred HHHHHHHHHHHHHC-CCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCc
Q 006891 140 FHALEERKQVIRNA-PHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSL 218 (627)
Q Consensus 140 ~~~l~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~ 218 (627)
.+.+ ..+ ... ..... ..+-..+........+|+. ..|++. ..+.. +... . .
T Consensus 474 --~~~~-d~~-~~~~~~~~d---------~~lv~~~~~~s~e~idwL~-~~Gv~f-~~~~~------~gg~------~-~ 525 (1167)
T PTZ00306 474 --FFER-DTH-LSGKGGHCD---------PGLVKTLSVKSADAISWLS-SLGVPL-TVLSQ------LGGA------S-R 525 (1167)
T ss_pred --HHHH-HHH-HhccCCCCC---------HHHHHHHHHhhHHHHHHHH-HcCCCc-eeeec------cCCC------C-C
Confidence 1111 000 110 00110 0011112222234455664 456542 21110 0000 0 0
Q ss_pred eEEEEec---Cceec--hHHHHHHHHHHHHH---cCCEEEcCcEEEEEEEcCC----C---CeEEEEEEEec--CCCcEE
Q 006891 219 KGAVVYY---DGQMN--DSRLNVGLALTAAL---AGAAVLNHAEVISLIKDEA----S---NRIIGARIRNN--LSGKEF 281 (627)
Q Consensus 219 ~g~~~~~---~g~~~--~~~l~~~l~~~a~~---~Gv~i~~~t~V~~l~~~~~----g---~~v~gV~~~d~--~~g~~~ 281 (627)
.....+. ++... ...++..+.+.+++ .|++|++++++++|+.+++ | .+|+||++++. .+|+..
T Consensus 526 ~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~ 605 (1167)
T PTZ00306 526 KRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVM 605 (1167)
T ss_pred CceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEE
Confidence 0011111 12111 24456667666655 4999999999999998642 1 17999999862 156667
Q ss_pred EEEcCeEEeccCCChHH
Q 006891 282 DTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 282 ~i~A~~VV~AtG~~s~~ 298 (627)
.|+||.||+|||+|..+
T Consensus 606 ~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 606 DLLADAVILATGGFSND 622 (1167)
T ss_pred EEEeceEEEecCCcccC
Confidence 89999999999999864
No 65
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.42 E-value=6.3e-12 Score=140.22 Aligned_cols=191 Identities=17% Similarity=0.155 Sum_probs=107.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCc-chHHHHHHHHHHHHHHHH
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDY-GQLKLVFHALEERKQVIR 151 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 151 (627)
||||||+|++|+++|+.|++.|++|+||||....++.|..+.|.+...... ... .......+ . .+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~-------~~~~d~~e~~~~---d---~~~ 67 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGN-------VDPDDSWEWHAY---D---TVK 67 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCC-------CCCCccHHHHHH---H---HHH
Confidence 899999999999999999999999999999987665555544433222110 000 11111110 0 001
Q ss_pred HCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceech
Q 006891 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND 231 (627)
Q Consensus 152 ~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~~ 231 (627)
....+..+ ..-..+........+++. ..|++....-+.......+.. .......+..+ ...
T Consensus 68 ~~~~~~d~---------~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~r~~~~~~--~~G 128 (566)
T TIGR01812 68 GSDYLADQ---------DAVEYMCQEAPKAILELE-HWGVPFSRTPDGRIAQRPFGG-------HSKDRTCYAAD--KTG 128 (566)
T ss_pred HhCCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCcceecCCCcEeeccccc-------cccCeeEECCC--CCH
Confidence 11111110 001111122223345554 456542111010000000000 00001111111 123
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
..+...|.+.+++.|+++++++.|++|+.++ | +|+||.+.+..+|+...+.||.||+|||+++.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-G-RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 4677888888888999999999999999875 7 99999886544566568999999999999874
No 66
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.42 E-value=8.3e-12 Score=138.22 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEc-CeEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A-~~VV~AtG~~s~~ 298 (627)
..++..|.+.+++.|++++++++|++|+.++ | +|+||++.. +++...+.| +.||+|||+++.+
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-G-RVVGVVVVR--DGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-C-EEEEEEEEE--CCeEEEEEecceEEEecCCccCC
Confidence 5677788888999999999999999999875 7 999998864 466678899 5899999999864
No 67
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=7.4e-12 Score=139.55 Aligned_cols=195 Identities=17% Similarity=0.102 Sum_probs=110.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCC---CeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHH-HHHH
Q 006891 68 NSNPLDILVIGGGATGCGVALDAATRG---LRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLV-FHAL 143 (627)
Q Consensus 68 ~~~~~DVvIIGgGi~G~~~A~~La~~G---~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~-~~~l 143 (627)
++.++||||||+|++|+++|+.|++.| ++|+||||....++.|..+.|.+...... . ...+.... ...+
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~--~-----~~ds~e~~~~d~~ 74 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYP--E-----KGDSFDLHAYDTV 74 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeecc--c-----cCCCHHHHHHHHH
Confidence 466799999999999999999999998 89999999987666666655444322110 0 00111111 1111
Q ss_pred HHHHHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEE
Q 006891 144 EERKQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV 223 (627)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~ 223 (627)
. ....++.+ .+-..+........+++. ..|++....-+..-....+.. .......+
T Consensus 75 ~-------~g~~~~d~---------~lv~~~~~~s~~~i~~L~-~~Gv~f~~~~~G~~~~~~~~g-------~~~~r~~~ 130 (577)
T PRK06069 75 K-------GSDFLADQ---------DAVEVFVREAPEEIRFLD-HWGVPWSRRPDGRISQRPFGG-------MSFPRTTF 130 (577)
T ss_pred H-------hhcccCCH---------HHHHHHHHHHHHHHHHHH-HcCCeeEecCCCcEeeeecCC-------cccceeeE
Confidence 1 11111110 001111222223345554 456652110000000000000 00101111
Q ss_pred ecCceechHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 224 YYDGQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 224 ~~~g~~~~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
..+ .....++..|.+.+.+ .|+++++++.|++|+.++ | +|+||.+.+..+++...+.|+.||+|||+++.
T Consensus 131 ~~d--~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 131 AAD--KTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-G-VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred cCC--CchHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 111 1235577788887776 699999999999999865 6 89999886544565567899999999999863
No 68
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.40 E-value=9.7e-12 Score=137.26 Aligned_cols=197 Identities=19% Similarity=0.180 Sum_probs=110.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||||||+|++|+++|+.|++. .+|+||||....+|+|..+.|.+...... ..+..... ..
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~---------~ds~e~~~---~d--- 69 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDE---------TDSIESHV---ED--- 69 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCC---------CccHHHHH---HH---
Confidence 5579999999999999999999986 89999999987777776666544322110 01111111 11
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCce
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~ 228 (627)
.+.....++.+ ..-..+...+....+++. ..|++..+.-+........+... ........+...+
T Consensus 70 ~~~~g~~~~d~---------~~v~~~~~~~~~~i~~L~-~~Gv~f~~~~~~~g~~~~~~~~~---gg~~~~r~~~~~~-- 134 (536)
T PRK09077 70 TLIAGAGLCDE---------DAVRFIAENAREAVQWLI-DQGVPFTTDEQANGEEGYHLTRE---GGHSHRRILHAAD-- 134 (536)
T ss_pred HHHHccCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCccccCCCCCccccccccCC---CCccCCceEecCC--
Confidence 00111111110 011112222334445554 45654211100000000000000 0000001111111
Q ss_pred echHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcC-----CCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDE-----ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~-----~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
.....+...|.+.+.+. |+++++++.|++|+.++ +| +|+||.+.+..+++...|.||.||+|||+++.
T Consensus 135 ~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 135 ATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR-RVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC-EEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 12345677777777765 89999999999999754 36 89999987645676678999999999999874
No 69
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.40 E-value=9.3e-12 Score=138.40 Aligned_cols=193 Identities=15% Similarity=0.118 Sum_probs=109.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (627)
+.++||||||+|++|+++|+.|++. |.+|+||||....++.|..+.|.+..... . ..+.+...+..
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~------~---~ds~e~~~~d~--- 69 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQ------D---HDSFDYHFHDT--- 69 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcC------C---CCCHHHHHHHH---
Confidence 5569999999999999999999987 58999999997766666555544332110 0 01111111111
Q ss_pred HHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecC
Q 006891 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (627)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~ 226 (627)
+.....++.+ ..-..+........++|. ..|++..+.-+..-....+... .....+...+
T Consensus 70 ---~~~g~~~~d~---------~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~-------~~~r~~~~~~ 129 (582)
T PRK09231 70 ---VAGGDWLCEQ---------DVVEYFVHHCPTEMTQLE-QWGCPWSRKPDGSVNVRRFGGM-------KIERTWFAAD 129 (582)
T ss_pred ---HHhcccCCCH---------HHHHHHHHHHHHHHHHHH-HcCCCcccCCCCceeeeccccc-------cCCeeEecCC
Confidence 0111111110 001112222223445554 4676522110000000001000 0001111111
Q ss_pred ceechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
. ....++..|.+.+.+. |++++.++.+++|+.++ | +|.||++.+..+|+...++||.||+|||+++.
T Consensus 130 ~--~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 130 K--TGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-G-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred C--cHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-C-EEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 1 2345677777777765 89999999999999865 6 89999876544666678999999999999884
No 70
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.39 E-value=5.7e-12 Score=138.94 Aligned_cols=190 Identities=18% Similarity=0.166 Sum_probs=107.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
+.++||||||+|++|+++|++|+ .|.+|+||||....+|+|..+.|.+...... ..+.....+ .
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~---------~ds~e~~~~---d--- 70 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAP---------DDSPKLHYE---D--- 70 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccC---------CCCHHHHHH---H---
Confidence 56799999999999999999997 4999999999987776666555444322110 011111111 1
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCce
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~ 228 (627)
.++....++.+ ..-..+........+|+. ..|++..+. +.. . ...+.- .......+...+.
T Consensus 71 ~~~~g~~~~d~---------~lv~~~~~~s~~~i~wL~-~~Gv~f~~~-~~~-~-~~~~~~-----g~s~~r~~~~~d~- 131 (553)
T PRK07395 71 TLKAGAGLCDP---------EAVRFLVEQAPEAIASLV-EMGVAFDRH-GQH-L-ALTLEA-----AHSRPRVLHAADT- 131 (553)
T ss_pred HHHhcCCCCCH---------HHHHHHHHHHHHHHHHHH-hcCCeeecC-CCc-e-eeeccc-----ccccCeEEEeCCC-
Confidence 11111111110 001112222223445554 456642111 100 0 000000 0000111111111
Q ss_pred echHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcC-CCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~-~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
....++..|.+.+++. |+++++++.|++|+.++ +| +|.||.+.+ ++....+.||.||+|||+++.
T Consensus 132 -~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g-~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 132 -TGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETG-RCQGISLLY--QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred -ChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCC-EEEEEEEEE--CCeEEEEEcCEEEEcCCCCcc
Confidence 2356777888877764 99999999999999874 37 999998864 555557899999999999754
No 71
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.39 E-value=1.1e-11 Score=137.60 Aligned_cols=193 Identities=18% Similarity=0.092 Sum_probs=110.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
.++||||||+|++|+++|+.|++. |++|+||||....++.|..+.|.+...... ..+.+...+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~---------~ds~e~~~~d----- 67 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGD---------DDSLDEHFHD----- 67 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCC---------CCCHHHHHHH-----
Confidence 358999999999999999999987 689999999987666665555444311100 0112111111
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
.+.....++.+ .+-..+...+....++|. ..|++..+.-+..-....+... .....+...+.
T Consensus 68 -t~~~g~~~~d~---------~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~-------~~~R~~~~~~~ 129 (580)
T TIGR01176 68 -TVSGGDWLCEQ---------DVVEYFVAEAPKEMVQLE-HWGCPWSRKPDGRVNVRRFGGM-------KKERTWFAADK 129 (580)
T ss_pred -HHHhcCCcCcH---------HHHHHHHHHhHHHHHHHH-HcCCccEecCCCceeeeccCCc-------cCCeeeecCCC
Confidence 11111111110 001111222223344454 4666532110100000001000 00011111111
Q ss_pred eechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
....++..|.+.+.+. |++++.++.+++|+.++ | +|.||.+.+..+|+...+.|+.||+|||+++..
T Consensus 130 --~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 130 --TGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-G-RVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred --CHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-C-EEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 2356788888877764 89999999999999875 6 999998866456766789999999999998853
No 72
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.39 E-value=8.7e-12 Score=136.68 Aligned_cols=189 Identities=19% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHHH
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVI 150 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (627)
++||||||+|++|+++|++|++ |.+|+||||..+.+|+|..+.|.+...... ..+.....+...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~---------~ds~e~~~~d~~------ 66 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVAT---------YDSPNDHFEDTL------ 66 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccC---------CCCHHHHHHHHH------
Confidence 5899999999999999999986 999999999987776665555544322110 011211111110
Q ss_pred HHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceec
Q 006891 151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230 (627)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~ 230 (627)
.....++.+ ..-..+........+++. ..|++..+.-+..-....+.. ......+ +..+...
T Consensus 67 ~~g~~~~d~---------~~v~~~~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~r~~-~~~gd~~ 128 (510)
T PRK08071 67 VAGCHHNNE---------RAVRYLVEEGPKEIQELI-ENGMPFDGDETGPLHLGKEGA-------HRKRRIL-HAGGDAT 128 (510)
T ss_pred HhccCcCCH---------HHHHHHHHHHHHHHHHHH-HcCCccccCCCCceeeccCcC-------ccCCeEE-ecCCCCc
Confidence 111111110 001111122223334443 356642110000000000000 0000111 1122234
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
+..++..|.+.+. .|+++++++.|++|+.++ | +|.||.+.+ .+++...+.||.||+|||+++.
T Consensus 129 g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g-~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 129 GKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-G-RCIGVLTKD-SEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHHh-cCCEEEECeEhhheeecC-C-EEEEEEEEE-CCCcEEEEEcCeEEEecCCCcc
Confidence 5667788877765 699999999999998865 6 899999876 4566568899999999999885
No 73
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.38 E-value=1.5e-10 Score=123.28 Aligned_cols=204 Identities=17% Similarity=0.125 Sum_probs=107.7
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec---CCCcEEEEEcCeEEeccCCChHHHhhhhc
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~---~~g~~~~i~A~~VV~AtG~~s~~l~~~~g 304 (627)
.++...+-..|.+.|.+.|++++.. .|+++..++++ + .|++.+. .+++..+++||.||.|+|.++ .+++.++
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S-~v~r~lg 162 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--V-TLTYRTPKKGAGGEKGSVEADVVIGADGANS-PVAKELG 162 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--E-EEEEEeccccCCCcceEEEeCEEEECCCCCc-HHHHHcC
Confidence 4677788889999999999999754 69999876643 3 3555431 123345799999999999998 6777776
Q ss_pred CCCCCc-eecCcceEEEecCC---CCCCCcceecc-cCCCCcEEEEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHH
Q 006891 305 QNVQPM-ICPSSGVHIVLPDY---YSPEGMGLIVP-KTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILD 379 (627)
Q Consensus 305 ~~~~~~-i~p~kG~~lv~~~~---~~~~~~~~~~~-~~~dg~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~ 379 (627)
...... ....+ +++..+.. ..+....+++. ....+...|++|..+...+|..... . ..+ .+.+++
T Consensus 163 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~-----~-~~~---~~~~~~ 232 (388)
T TIGR02023 163 LPKNLPRVIAYQ-ERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGT-----H-GFD---AKQLQA 232 (388)
T ss_pred CCCCCcEEEEEE-EEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECC-----C-CCC---HHHHHH
Confidence 542111 11111 22222221 11111112221 1123456788998776666652111 0 112 223333
Q ss_pred HHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeee-cCCCeEEE-ecChhhhHHHHHHHHHHHHHHc
Q 006891 380 AISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVTI-TGGKWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 380 ~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~-~~~gl~~~-~Gg~~t~~~~~Ae~~~~~~~~~ 454 (627)
.+.+.+ + +...+++...++.-|+.+-+ ....+.++.. +..|++.- +|+++..+..-|..+++.+.+.
T Consensus 233 ~l~~~~-~-~~~~~~~~~~~~~ip~~~~~------~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~ 301 (388)
T TIGR02023 233 NLRRRA-G-LDGGQTIRREAAPIPMKPRP------RWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEY 301 (388)
T ss_pred HHHHhh-C-CCCceEeeeeeEeccccccc------cccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHH
Confidence 343333 1 22233455555555552210 0112223332 44566654 5556666666666666666654
No 74
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.38 E-value=7.4e-12 Score=138.70 Aligned_cols=63 Identities=27% Similarity=0.368 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcC-eEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAK-VVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~-~VV~AtG~~s~~ 298 (627)
..+...|.+.+++.|++++++++|++|+.++ | +|+||++.. +++...|.|+ .||+|||++..+
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g-~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVED-G-RVTGVHAAE--SGEPQLIRARRGVILASGGFEHN 271 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-C-EEEEEEEEe--CCcEEEEEeceeEEEccCCcCcC
Confidence 3456677777888999999999999999865 6 999998864 4556789996 699999998753
No 75
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.38 E-value=1.1e-11 Score=138.41 Aligned_cols=186 Identities=22% Similarity=0.177 Sum_probs=103.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEER 146 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (627)
+.++||||||+|++|+++|+.|++. |.+|+||||.....+.+ .+++....+..... . .+.....+.+
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~----~---ds~e~~~~d~--- 77 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGE----G---ETPEDYVRYV--- 77 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCcccccccccc----C---CCHHHHHHHH---
Confidence 4569999999999999999999998 99999999987643222 22221000000000 0 0111111111
Q ss_pred HHHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecC
Q 006891 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYD 226 (627)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~ 226 (627)
+.....++.+ ..-..+........+++. ..|++.....+. ..++ . +.. .
T Consensus 78 ---~~~~~~~~d~---------~lv~~~~~~s~~~i~~L~-~~Gv~f~~~~~G----~~~~--------~---g~~---~ 126 (608)
T PRK06854 78 ---RKDLMGIVRE---------DLVYDIARHVDSVVHLFE-EWGLPIWKDENG----KYVR--------R---GRW---Q 126 (608)
T ss_pred ---HHhccCCCCH---------HHHHHHHHhHHHHHHHHH-HcCCeeeecCCC----Cccc--------c---CCc---c
Confidence 1111111110 001111112223444553 456542111000 0000 0 000 0
Q ss_pred ceechHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 227 GQMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
-.+++..+...|.+.+++.| +++++++.|++|+.++ | +|+||.+.+..+++...+.||.||+|||+|+..
T Consensus 127 ~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (608)
T PRK06854 127 IMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-N-RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGI 197 (608)
T ss_pred CCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-C-EEEEEEEEEccCCcEEEEECCEEEECCCchhhc
Confidence 01245567777888888876 9999999999998865 6 899998754345655689999999999999853
No 76
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.38 E-value=8.7e-12 Score=133.94 Aligned_cols=187 Identities=14% Similarity=0.169 Sum_probs=103.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQV 149 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 149 (627)
.++||||||+|.+|+++|+.|+ .|++|+||||.+..++.|..+.+.+.. ... ..+.....+.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~----~~~------~d~~~~~~~d~~----- 66 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISV----ARN------KDDITSFVEDTL----- 66 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhhee----CCC------CCCHHHHHHHHH-----
Confidence 4689999999999999999985 799999999998766665544432221 000 012211111110
Q ss_pred HHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCcee
Q 006891 150 IRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQM 229 (627)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~ 229 (627)
........ ...-..+........+|+. ..|++. ..-.. .. .++.. ........+.+.+ .
T Consensus 67 -~~g~~~~d---------~~lv~~~~~~s~e~i~wL~-~~Gv~f-~~~~~-~~--~~~~~----g~~~~~r~~~~~~--~ 125 (433)
T PRK06175 67 -KAGQYENN---------LEAVKILANESIENINKLI-DMGLNF-DKDEK-EL--SYTKE----GAHSVNRIVHFKD--N 125 (433)
T ss_pred -HHhCCCCC---------HHHHHHHHHHHHHHHHHHH-HcCCcc-ccCCC-ce--eeecc----CccccCeEEecCC--C
Confidence 11110000 0001112222234445554 345542 11000 00 00000 0000001111111 1
Q ss_pred chHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 230 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
....++..|.+.+++ .|++|+++++|++|+.++ + +|+||.+.+ +++...++||.||+|||+++.
T Consensus 126 ~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~-~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 126 TGKKVEKILLKKVKKRKNITIIENCYLVDIIEND-N-TCIGAICLK--DNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-C-EEEEEEEEE--CCcEEEEEcCeEEEccCcccc
Confidence 245677888887775 499999999999998865 6 899987653 344457999999999999774
No 77
>PRK10015 oxidoreductase; Provisional
Probab=99.37 E-value=1.6e-10 Score=124.04 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=53.6
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~ 305 (627)
+....+-..|.+.+++.|++++.+++|+++..++ + ++.+|.. +. .++.|+.||.|+|.++ .+.+.++.
T Consensus 105 v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~-~v~~v~~-----~~-~~i~A~~VI~AdG~~s-~v~~~lg~ 172 (429)
T PRK10015 105 VLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG-N-KVTGVQA-----GD-DILEANVVILADGVNS-MLGRSLGM 172 (429)
T ss_pred eehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC-C-EEEEEEe-----CC-eEEECCEEEEccCcch-hhhcccCC
Confidence 4556777788899999999999999999998765 5 6766643 22 4799999999999987 66666654
No 78
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.37 E-value=1.4e-11 Score=134.79 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=109.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHHH
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVI 150 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (627)
++||||||+|++|+++|+.|++.|. |+||||.+...|+|..+.|.+...... ..+.+...+. .+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~---------~ds~e~~~~d------~~ 65 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAE---------TDSIDSHVED------TL 65 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecC---------CCCHHHHHHH------HH
Confidence 4899999999999999999999998 999999987666666655544322110 0111111111 11
Q ss_pred HHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceec
Q 006891 151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230 (627)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~ 230 (627)
.....++.+- .-..+........+++. ..|++..+.-+..-....+.. ......+.. +...
T Consensus 66 ~~~~~~~d~~---------~v~~~~~~~~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg-------~~~~r~~~~--~~~~ 126 (488)
T TIGR00551 66 AAGAGICDRE---------AVEFVVSDARSAVQWLV-DQGVLFDRHEQGSYALTREGG-------HSYRRILHA--ADAT 126 (488)
T ss_pred HhcCCcCCHH---------HHHHHHHhHHHHHHHHH-HcCCcceeCCCCCccccCCCC-------cCCCeEEEe--CCCC
Confidence 1111111110 01111222233445554 456542111110000000000 001111111 1224
Q ss_pred hHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 231 ~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
...+...|.+.+++ .|+++++++.|++|+.++ | +|.||.+.+ . +....+.|+.||+|||+|+..
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g-~v~Gv~~~~-~-~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIET-G-RVVGVWVWN-R-ETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-C-EEEEEEEEE-C-CcEEEEEcCEEEECCCcccCC
Confidence 56788889888887 699999999999999865 6 899998875 2 444578999999999999853
No 79
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.37 E-value=1.7e-11 Score=136.38 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=55.4
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEc-CeEEeccCCChHH
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPFCDS 298 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A-~~VV~AtG~~s~~ 298 (627)
.++..++..|.+.+++.|++++++++|++|+.++ | +|+||.+.+ +++...+.| +.||+|||+++.+
T Consensus 218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g-~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 218 VMGNALIGRLLYSLRARGVRILTQTDVESLETDH-G-RVIGATVVQ--GGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-C-EEEEEEEec--CCeEEEEEccceEEECCCCcccC
Confidence 3466788899999999999999999999999864 6 999998864 455567887 7899999999865
No 80
>PRK08275 putative oxidoreductase; Provisional
Probab=99.37 E-value=1e-11 Score=137.66 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
..+...|.+.+++.|+++++++.|++|+.+++| +|.||.+.+..+|+...+.||.||+|||+++.
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADG-RVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCC-eEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 467788888888999999999999999987457 89999876544566567899999999999874
No 81
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.37 E-value=2.2e-11 Score=130.00 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=62.6
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
.++...+...|.+.+.+.|++++++++|+++..+++ .++ |++. +|+ ++.||.||.|+|.++ .+++.+++..
T Consensus 109 ~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~---~g~--~~~a~~vV~AdG~~S-~vr~~~g~~~ 179 (392)
T PRK08773 109 IVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD--RVR-LRLD---DGR--RLEAALAIAADGAAS-TLRELAGLPV 179 (392)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC--eEE-EEEC---CCC--EEEeCEEEEecCCCc-hHHHhhcCCc
Confidence 456678888999999999999999999999988764 332 4442 343 689999999999999 7888887654
Q ss_pred CCceecCcceEEEec
Q 006891 308 QPMICPSSGVHIVLP 322 (627)
Q Consensus 308 ~~~i~p~kG~~lv~~ 322 (627)
+..-++.++....++
T Consensus 180 ~~~~~~~~~~~~~v~ 194 (392)
T PRK08773 180 SRHDYAQRGVVAFVD 194 (392)
T ss_pred eEEEeccEEEEEEEE
Confidence 222244455544443
No 82
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.36 E-value=1.4e-11 Score=137.36 Aligned_cols=192 Identities=17% Similarity=0.144 Sum_probs=102.8
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEcCCC-CCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHHHHHH
Q 006891 74 ILVIGGGATGCGVALDAATRGLRVGLVERED-FSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQVIRN 152 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~~V~lvEk~~-~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (627)
|||||+|++|+++|+.|++.|++|+||||.. ++.+.|..++|.+.+...... . ..+..... .. .+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~---~---~ds~e~~~---~d---~~~~ 68 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKG---D---GDSPWRHF---DD---TVKG 68 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCC---C---CCCHHHHH---HH---HHHh
Confidence 7999999999999999999999999999987 655555555443322111100 0 01111111 11 1111
Q ss_pred CCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceechH
Q 006891 153 APHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMNDS 232 (627)
Q Consensus 153 ~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~~~ 232 (627)
...++.+ ..-..+........+|+. ..|++..+.-+..-....++.. .....++..+. ...
T Consensus 69 g~~~~d~---------~lv~~l~~~s~~~i~~L~-~~Gv~f~~~~~g~~~~~~~gg~-------~~~R~~~~~~~--tG~ 129 (603)
T TIGR01811 69 GDFRARE---------SPVKRLAVASPEIIDLMD-AMGVPFAREYGGLLDTRSFGGV-------QVSRTAYARGQ--TGQ 129 (603)
T ss_pred cCCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCEEEecCCCccccccccCc-------ccCcceecCCC--Chh
Confidence 1111110 001111111223445554 4566421111000000011100 00011111111 123
Q ss_pred HHHHHHHHHHHH----cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 233 RLNVGLALTAAL----AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 233 ~l~~~l~~~a~~----~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
.++..|.+.+++ .|++++++++|++|+.+++| +|+||.+.+..+++...+.||.||+|||+++.
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~g-rV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGN-RARGIIARNLVTGEIETHSADAVILATGGYGN 197 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence 455555554443 48999999999999987667 99999997644666678999999999999864
No 83
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.36 E-value=1.4e-11 Score=136.60 Aligned_cols=206 Identities=15% Similarity=0.053 Sum_probs=105.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC--CCCCCcCCCCCcccc-hhhhhhhhhccCCcchHHHHHHHHHHH
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED--FSSGTSSRSTKLIHG-GVRYLEKAVFNLDYGQLKLVFHALEER 146 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~--~~~g~S~~~~~~i~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~ 146 (627)
.++||||||+|++|+++|+.|++.|++|+||||.+ ..+|+|..+++.++. +...+.....+ .+.+...+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~---ds~e~~~~d---- 75 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIK---DSLELALQD---- 75 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcc---cCHHHHHHH----
Confidence 56999999999999999999999999999999998 556666656554432 21111111011 111111111
Q ss_pred HHHHHHCCCCcccCCCccccCCchhHHHHHH-HHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEec
Q 006891 147 KQVIRNAPHLSNALPCMTPCFDWFEVVYYWV-GLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYY 225 (627)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~ 225 (627)
++........+ .. + ...+...+... .....+|+. ..|++........+.....+.. ....... .+..
T Consensus 76 --~~~~~~~~~~~-~~-~--~~~~~~~~~~~~s~e~i~wL~-~~Gv~f~~~~~~~~~~~~~~~~----~~~~~~r-~~~~ 143 (549)
T PRK12834 76 --WLGSAGFDRPE-DH-W--PRQWAEAYVDFAAGEKRSWLH-SLGLRFFPVVGWAERGGGDAGG----HGNSVPR-FHIT 143 (549)
T ss_pred --HHhccCCCCcc-cc-c--hHHHHHHHHHhCCHHHHHHHH-HcCCeeEecCCccccCCcccCC----cccccCc-eecC
Confidence 11111110000 00 0 00001111211 224445554 4555421111000000000000 0000000 1111
Q ss_pred CceechHHHHHHHHHHHH----HcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCC-------------CcEEEEEcCeE
Q 006891 226 DGQMNDSRLNVGLALTAA----LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS-------------GKEFDTYAKVV 288 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~----~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~-------------g~~~~i~A~~V 288 (627)
++ ....++..|.+.++ +.|++|++++++++|+.++ | +|+||++.+..+ ++...|+||.|
T Consensus 144 ~~--~G~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~-g-~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaV 219 (549)
T PRK12834 144 WG--TGPGVVEPFERRVREAAARGLVRFRFRHRVDELVVTD-G-AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAV 219 (549)
T ss_pred CC--CcHHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC-C-EEEEEEEEecccccccccccccccccceEEEecCEE
Confidence 10 12345566655543 2369999999999999875 7 999999742111 12458899999
Q ss_pred EeccCCChHH
Q 006891 289 VNAAGPFCDS 298 (627)
Q Consensus 289 V~AtG~~s~~ 298 (627)
|+|||+|+.+
T Consensus 220 ILATGGf~~n 229 (549)
T PRK12834 220 IVTSGGIGGN 229 (549)
T ss_pred EEeCCCcccC
Confidence 9999999855
No 84
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.8e-11 Score=112.87 Aligned_cols=70 Identities=26% Similarity=0.351 Sum_probs=55.5
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec---CCC---cEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~---~~g---~~~~i~A~~VV~AtG~~s~~ 298 (627)
..|+..++..++..|.+.|++|++.+.|.+++..++. +|.||.+.=. ..+ +...++|++||-|||.-+.-
T Consensus 105 v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~-rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v 180 (262)
T COG1635 105 VADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDP-RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEV 180 (262)
T ss_pred EecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCC-ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHH
Confidence 3577889999999999999999999999999887755 7999886410 001 23578999999999988743
No 85
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.35 E-value=7.8e-11 Score=126.65 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=55.1
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
.++...+-..|.+.+++.|++++.+++|+++..++ + ++.++.. ++ .++.|+.||.|+|.++ .+.+.++..
T Consensus 104 ~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g-~v~~v~~----~g--~~i~A~~VI~A~G~~s-~l~~~lgl~ 173 (428)
T PRK10157 104 SVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD-G-KVVGVEA----DG--DVIEAKTVILADGVNS-ILAEKLGMA 173 (428)
T ss_pred eeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC-C-EEEEEEc----CC--cEEECCEEEEEeCCCH-HHHHHcCCC
Confidence 35567788889999999999999999999998765 5 6655532 23 3789999999999987 677777654
No 86
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.35 E-value=7.5e-10 Score=117.98 Aligned_cols=204 Identities=17% Similarity=0.099 Sum_probs=112.8
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhh-cCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA-DQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~-g~~ 306 (627)
.++...+...+.+.+.+.|++++ .++|+.+..+++ ..+.|++. +| .+++|+.||.|+|.++ .+.... +..
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~--~~~~v~~~---~g--~~~~a~~VI~A~G~~s-~~~~~~~~~~ 151 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV--ALSTVYCA---GG--QRIQARLVIDARGFGP-LVQYVRFPLN 151 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC--ceeEEEeC---CC--CEEEeCEEEECCCCch-hcccccCCCC
Confidence 47788899999999999999986 568998887632 33445442 33 3789999999999997 332211 111
Q ss_pred CCCceecCcceEEEecCCCCCCCcceeccc--CC-------CCc--EEEEEecC-CcEEEecCCCCCCCCCCCCCCHHHH
Q 006891 307 VQPMICPSSGVHIVLPDYYSPEGMGLIVPK--TK-------DGR--VVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEI 374 (627)
Q Consensus 307 ~~~~i~p~kG~~lv~~~~~~~~~~~~~~~~--~~-------dg~--~~~~~P~~-g~~~iG~t~~~~~~~~~~~~~~~~~ 374 (627)
..+...+|..+.++.........+++.. .. ... .+|++|.. +..+++.|.... ....+.+++
T Consensus 152 --~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~----~~~~~~~~~ 225 (388)
T TIGR01790 152 --VGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLAD----RPALPRDRL 225 (388)
T ss_pred --ceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccC----CCCCCHHHH
Confidence 2234456776666532222122222210 11 123 78899975 567787654211 122334444
Q ss_pred HHHHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeee-cCCCeEEE-ecChhhhHHHHHHHHHHHHH
Q 006891 375 QFILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVTI-TGGKWTTYRSMAEDAVNAAI 452 (627)
Q Consensus 375 ~~ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~-~~~gl~~~-~Gg~~t~~~~~Ae~~~~~~~ 452 (627)
+..+...-+-+ .+....++..-.|+.|+.... . . .++.++.. +..|+++- +|..+..+-.-|..+++.+.
T Consensus 226 ~~~l~~~~~~~--g~~~~~i~~~~~~~iP~~~~~--~-~---~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~ 297 (388)
T TIGR01790 226 RQRILARLNAQ--GWQIKTIEEEEWGALPVGLPG--P-F---LPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIA 297 (388)
T ss_pred HHHHHHHHHHc--CCeeeEEEeeeeEEEecccCC--C-c---cCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHH
Confidence 44333222222 233334555556777885321 0 1 12334433 33455544 56667777777777777766
Q ss_pred Hc
Q 006891 453 KS 454 (627)
Q Consensus 453 ~~ 454 (627)
+.
T Consensus 298 ~~ 299 (388)
T TIGR01790 298 QA 299 (388)
T ss_pred HH
Confidence 54
No 87
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.34 E-value=2.9e-10 Score=120.11 Aligned_cols=200 Identities=21% Similarity=0.283 Sum_probs=117.4
Q ss_pred ceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
..++...+-..+.+.+. .+..++.+++|++|..++++ ..|++. +|. +++|+.||.|.|..+. ....
T Consensus 82 ~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~---~~v~~~---~g~--~i~a~~VvDa~g~~~~-~~~~---- 147 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDG---VLVVLA---DGR--TIRARVVVDARGPSSP-KARP---- 147 (374)
T ss_pred EEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCce---EEEEEC---CCC--EEEeeEEEECCCcccc-cccc----
Confidence 35777888888888888 44456678999999887643 224442 344 8999999999996554 1111
Q ss_pred CCCceecCcceEEEecCC-CCCCCccee---cccC-CCCcEEEEEecC-CcEEEecCCCCCCCCCCCCCCHHHHHHHH-H
Q 006891 307 VQPMICPSSGVHIVLPDY-YSPEGMGLI---VPKT-KDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFIL-D 379 (627)
Q Consensus 307 ~~~~i~p~kG~~lv~~~~-~~~~~~~~~---~~~~-~dg~~~~~~P~~-g~~~iG~t~~~~~~~~~~~~~~~~~~~ll-~ 379 (627)
.......|..+.++.+ +.+....++ .++. ..-+.+|++|.. +..+|..|.-. ..+..+.++++.-+ +
T Consensus 148 --~~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs----~~~~~~~~~~~~~l~~ 221 (374)
T PF05834_consen 148 --LGLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFS----PRPALPEEELKARLRR 221 (374)
T ss_pred --cccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEc----CCCCCCHHHHHHHHHH
Confidence 1123335666666554 233222221 1212 223689999986 67788766421 12223455554433 3
Q ss_pred HHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeec-CCCeEEE-ecChhhhHHHHHHHHHHHHHH
Q 006891 380 AISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCED-FPGLVTI-TGGKWTTYRSMAEDAVNAAIK 453 (627)
Q Consensus 380 ~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~-~~gl~~~-~Gg~~t~~~~~Ae~~~~~~~~ 453 (627)
.+.+ + .++..+|++.-.|+-|++..+. .... ...++..+ ..|+++. +|..+..+...|+.+++.+.+
T Consensus 222 ~l~~-~--g~~~~~i~~~E~G~IPm~~~~~---~~~~-~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 222 YLER-L--GIDDYEILEEERGVIPMTTGGF---PPRF-GQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred HHHH-c--CCCceeEEEeecceeecccCCC---cccc-CCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 3333 2 5566779999999999953321 1111 12244433 4566655 455577777777777777665
No 88
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.33 E-value=5.2e-10 Score=120.43 Aligned_cols=76 Identities=17% Similarity=0.074 Sum_probs=53.3
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC-CCeEEEEEEEec----CCCcEEEEEcCeEEeccCCChHHHhhh
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNN----LSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~-g~~v~gV~~~d~----~~g~~~~i~A~~VV~AtG~~s~~l~~~ 302 (627)
.++...+-..|.+.|.+.|++++.. .++++..+.+ + ..+.|++.+. .+|+..+++||.||.|.|.+| .+++.
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~-~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~ 204 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPN-GPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKD 204 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCC-CcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHH
Confidence 4677788888999999999999765 5888765321 1 2234555431 014445899999999999998 77777
Q ss_pred hcCC
Q 006891 303 ADQN 306 (627)
Q Consensus 303 ~g~~ 306 (627)
++..
T Consensus 205 lg~~ 208 (450)
T PLN00093 205 IDAG 208 (450)
T ss_pred hCCC
Confidence 7654
No 89
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.32 E-value=2.5e-11 Score=134.43 Aligned_cols=186 Identities=20% Similarity=0.177 Sum_probs=102.3
Q ss_pred cEEEECCChHHHHHHHHHH----HCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 73 DILVIGGGATGCGVALDAA----TRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La----~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
||||||+|++|++||+.|+ +.|++|+||||..+...+ +.+.|+...+....... ...+.....+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~-s~A~G~~gi~~~~~~~~----g~Ds~e~~~~d~~---- 71 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSG-AVAQGLSAINTYLGTRF----GENNAEDYVRYVR---- 71 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCC-ccccccchhhhhhhccc----CCCCHHHHHHHHH----
Confidence 8999999999999999998 789999999998764322 23444321121111100 0011111111110
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEE-ecCc
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVV-YYDG 227 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~-~~~g 227 (627)
.....++.+ ..-..+...+....++|. ..|++..+.-..... .+ . +... ...|
T Consensus 72 --~~~~gl~d~---------~lV~~lv~~s~~~i~~L~-~~Gv~F~~~~~~G~~---~~--------~---g~~~~~~gG 125 (614)
T TIGR02061 72 --TDLMGLVRE---------DLIFDMARHVDDSVHLFE-EWGLPLWIKPEDGKY---VR--------E---GRWQIMIHG 125 (614)
T ss_pred --HhcCCCCcH---------HHHHHHHHHHHHHHHHHH-HcCCCceecCCCCcc---cc--------C---CCcccCcCc
Confidence 111111111 011122223334455554 467653210000000 00 0 0000 0112
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC--CCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~--g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
..+...+...+.+.++++++++.|++|+.+++ | +|+||++.+..+|+...+.||.||+|||+|+..
T Consensus 126 ----~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G-rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 193 (614)
T TIGR02061 126 ----ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN-RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNV 193 (614)
T ss_pred ----hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC-eEEEEEEEEeCCCcEEEEECCEEEECCCccccc
Confidence 23333444455666789999999999998653 6 999999876567776789999999999999853
No 90
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.32 E-value=2.8e-11 Score=132.83 Aligned_cols=190 Identities=17% Similarity=0.122 Sum_probs=104.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC-CCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS-SGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~-~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
+.++||||||+|++|+++|+.|+ |.+|+||||...+ +|+|..+.|.+...... . .+.....+.+
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~------~---ds~e~~~~d~---- 71 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGP------D---DSPALHAADT---- 71 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCC------C---CCHHHHHHHH----
Confidence 56799999999999999999997 6799999999873 44554444433221100 0 1111111111
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
+.....++.+ ..-..+........+|+. ..|++..+.-+..-....+. .......+. ..+
T Consensus 72 --~~~~~g~~d~---------~~v~~~~~~s~~~i~wL~-~~Gv~f~~~~~G~~~~~~~~-------~~~~~r~~~-~~g 131 (513)
T PRK07512 72 --LAAGAGLCDP---------AVAALITAEAPAAIEDLL-RLGVPFDRDADGRLALGLEA-------AHSRRRIVH-VGG 131 (513)
T ss_pred --HHhhCCCCCH---------HHHHHHHHHHHHHHHHHH-HhCCccccCCCCcccccccc-------CccCCcEEE-cCC
Confidence 0111111110 001111222223445554 45654211000000000000 000001111 112
Q ss_pred eechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
...+..++..|.+.+.+. |+++++++.|++|+.++ | +|+||++.+ ++....+.||.||+|||+++.
T Consensus 132 ~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g-~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 132 DGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDD-G-AVAGVLAAT--AGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEECcChhheeecC-C-EEEEEEEEe--CCeEEEEECCEEEEcCCCCcC
Confidence 223567888888888775 89999999999998765 6 999998865 333457899999999999864
No 91
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.32 E-value=5.3e-11 Score=117.87 Aligned_cols=68 Identities=28% Similarity=0.385 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec---CCC---cEEEEEcCeEEeccCCChH
Q 006891 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~---~~g---~~~~i~A~~VV~AtG~~s~ 297 (627)
+...+...|.+.+.+.|+++++++.|.++..++++.+|.||.+... ..+ +...++|+.||.|||..+.
T Consensus 98 ~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 98 DSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred eHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 5567888999999999999999999999998764336899987421 011 2468999999999998873
No 92
>PRK08244 hypothetical protein; Provisional
Probab=99.31 E-value=6.8e-10 Score=122.03 Aligned_cols=72 Identities=24% Similarity=0.222 Sum_probs=54.3
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
+....+...|.+.+++.|++++++++|+++..+++ .++ |++.+ .+| ..+++||+||.|.|.+| .+++.+++.
T Consensus 97 i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~-~~g-~~~i~a~~vVgADG~~S-~vR~~lgi~ 168 (493)
T PRK08244 97 LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GVE-VVVRG-PDG-LRTLTSSYVVGADGAGS-IVRKQAGIA 168 (493)
T ss_pred ecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eEE-EEEEe-CCc-cEEEEeCEEEECCCCCh-HHHHhcCCC
Confidence 33456667777778888999999999999988764 343 55543 234 24799999999999998 688887754
No 93
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.30 E-value=3.2e-10 Score=120.82 Aligned_cols=209 Identities=19% Similarity=0.150 Sum_probs=104.2
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CCCeEEEEEEEecC----CCcEEEEEcCeEEeccCCChHHHhhh
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNL----SGKEFDTYAKVVVNAAGPFCDSVRKL 302 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~-~g~~v~gV~~~d~~----~g~~~~i~A~~VV~AtG~~s~~l~~~ 302 (627)
.++-..+-..|.+.|.+.|++++..+ ++++.... .+ ..++|++.... +|+..+++||.||.|+|..| .+++.
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~-~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~ 165 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADAD-DPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKE 165 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCC-ceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHH
Confidence 46667777889999999999998775 77775421 12 34556654211 14445899999999999998 78887
Q ss_pred hcCCCCCceecCcceEEEecCCCCC--CCcc-eecc-cCCCCcEEEEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHH
Q 006891 303 ADQNVQPMICPSSGVHIVLPDYYSP--EGMG-LIVP-KTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFIL 378 (627)
Q Consensus 303 ~g~~~~~~i~p~kG~~lv~~~~~~~--~~~~-~~~~-~~~dg~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll 378 (627)
++..........+ ..+.++..... .... +.+- ....+...|++|..+...||..... ... .++.++
T Consensus 166 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~~~VG~g~~~------~~~---~~~~~~ 235 (398)
T TIGR02028 166 IDAGDYSYAIAFQ-ERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVA------AKP---EIKRLQ 235 (398)
T ss_pred hCCCCcceEEEEE-EEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCeEEEEEEeCC------CCc---cHHHHH
Confidence 7754210000000 11122221100 0111 1111 0122335789998776667763211 011 123343
Q ss_pred HHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeeecCCCeEE-EecChhhhHHHHHHHHHHHHHHc
Q 006891 379 DAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCEDFPGLVT-ITGGKWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 379 ~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~~~~gl~~-~~Gg~~t~~~~~Ae~~~~~~~~~ 454 (627)
+.+...+...+....++...+|.-|+..- ........++..+.-|+++ ++|+++-.+-.-|+.+++.+.+.
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~~~ip~~~~-----~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~ 307 (398)
T TIGR02028 236 SGIRARAAGKVAGGRIIRVEAHPIPEHPR-----PRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEE 307 (398)
T ss_pred HhhhhhhhhccCCCcEEEEEEEecccccc-----ccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 33333221122233455556665554211 0001112223334456665 46666555555555555555443
No 94
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.30 E-value=3.9e-11 Score=127.84 Aligned_cols=69 Identities=23% Similarity=0.186 Sum_probs=51.5
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
++...+...|.+.+.+.+...+++++|+++..++++ +. |++. +|+ +++||.||.|+|.++ .+++.++.+
T Consensus 108 i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~--~~-v~~~---~g~--~~~a~~vI~AdG~~S-~vr~~~g~~ 176 (388)
T PRK07494 108 IPNWLLNRALEARVAELPNITRFGDEAESVRPREDE--VT-VTLA---DGT--TLSARLVVGADGRNS-PVREAAGIG 176 (388)
T ss_pred eEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe--EE-EEEC---CCC--EEEEeEEEEecCCCc-hhHHhcCCC
Confidence 556678888888888875444789999999887643 32 4442 343 789999999999998 688877765
No 95
>PLN02463 lycopene beta cyclase
Probab=99.29 E-value=1.9e-09 Score=115.49 Aligned_cols=204 Identities=16% Similarity=0.155 Sum_probs=106.2
Q ss_pred ceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 227 GQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
+.++...+...+.+.+.+.|++++ .++|+++..++++ +.|++. +| .+++|+.||.|+|..+. +.+... .
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~---~~V~~~---dG--~~i~A~lVI~AdG~~s~-l~~~~~-~ 177 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK---SLVVCD---DG--VKIQASLVLDATGFSRC-LVQYDK-P 177 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe---EEEEEC---CC--CEEEcCEEEECcCCCcC-ccCCCC-C
Confidence 356778888899999989999996 5799999887643 345553 34 37999999999999874 332111 0
Q ss_pred CCCceecCcceEEEecCCCCCCCcceecc----cC---------CC--CcEEEEEecC-CcEEEecCCCCCCCCCCCCCC
Q 006891 307 VQPMICPSSGVHIVLPDYYSPEGMGLIVP----KT---------KD--GRVVFMLPWL-GRTVAGTTDSDTVITLLPEPH 370 (627)
Q Consensus 307 ~~~~i~p~kG~~lv~~~~~~~~~~~~~~~----~~---------~d--g~~~~~~P~~-g~~~iG~t~~~~~~~~~~~~~ 370 (627)
.........|....++.........+++. +. .. ...+|++|.. +..+++.|.--. .+..+
T Consensus 178 ~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s----~~~~~ 253 (447)
T PLN02463 178 FNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVA----RPGLP 253 (447)
T ss_pred CCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeec----CCCCC
Confidence 00111112222232222111111111100 00 00 2478999986 457777764211 11223
Q ss_pred HHHHHH-HHHHHhhhcccCCCccceeeeeeeeeccccCCCCCCCCCCcccceeee-cCCCeEEE-ecChhhhHHHHHHHH
Q 006891 371 EDEIQF-ILDAISDYLNVKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVCE-DFPGLVTI-TGGKWTTYRSMAEDA 447 (627)
Q Consensus 371 ~~~~~~-ll~~~~~~~~~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~~-~~~gl~~~-~Gg~~t~~~~~Ae~~ 447 (627)
.++++. +.+.+. .+ .+....|.+.-.|+-|+... .. .. .+.++.. +..|+++- +|+.+..+..-|..+
T Consensus 254 ~~~lk~~L~~~l~-~~--Gi~~~~i~~~E~~~IPmg~~--~~---~~-~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~ 324 (447)
T PLN02463 254 MDDIQERMVARLR-HL--GIKVKSVEEDEKCVIPMGGP--LP---VI-PQRVLGIGGTAGMVHPSTGYMVARTLAAAPIV 324 (447)
T ss_pred HHHHHHHHHHHHH-HC--CCCcceeeeeeeeEeeCCCC--CC---CC-CCCEEEecchhcCcCCCccccHHHHHHHHHHH
Confidence 444443 333333 22 34445677777778888422 01 11 2234443 34465554 565555555555555
Q ss_pred HHHHHHc
Q 006891 448 VNAAIKS 454 (627)
Q Consensus 448 ~~~~~~~ 454 (627)
++.+.+.
T Consensus 325 a~~~~~~ 331 (447)
T PLN02463 325 ADAIVEY 331 (447)
T ss_pred HHHHHHH
Confidence 5555444
No 96
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.28 E-value=1.3e-10 Score=124.46 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=55.8
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
.++...+...|.+.+.+.|++++++++|+++..+++ .+ .|++. +|. .+.||.||.|+|.++ .+++.++..
T Consensus 107 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v-~v~~~---~g~--~~~ad~vI~AdG~~S-~vr~~~g~~ 176 (403)
T PRK07333 107 MVENRVLINALRKRAEALGIDLREATSVTDFETRDE--GV-TVTLS---DGS--VLEARLLVAADGARS-KLRELAGIK 176 (403)
T ss_pred EeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--EE-EEEEC---CCC--EEEeCEEEEcCCCCh-HHHHHcCCC
Confidence 467788899999999999999999999999988764 33 24442 343 689999999999998 588887765
No 97
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.28 E-value=1.2e-10 Score=117.80 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
...++.+++..+++.||+++++++|.++..++++ ..+.+ .+|+ +|+|+.+|+|+|+-|
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~---f~l~t---~~g~--~i~~d~lilAtGG~S 167 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG---FRLDT---SSGE--TVKCDSLILATGGKS 167 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecCce---EEEEc---CCCC--EEEccEEEEecCCcC
Confidence 3578899999999999999999999999998743 22333 2343 799999999999654
No 98
>PRK06184 hypothetical protein; Provisional
Probab=99.28 E-value=4.8e-10 Score=123.50 Aligned_cols=71 Identities=24% Similarity=0.170 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
-..+...|.+.+.+.|++++++++|+++..++++ |+ |++.+ .+ ...+++||+||.|+|.+| .+++.+++..
T Consensus 108 q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~-v~~~~-~~-~~~~i~a~~vVgADG~~S-~vR~~lgi~~ 178 (502)
T PRK06184 108 QWRTERILRERLAELGHRVEFGCELVGFEQDADG--VT-ARVAG-PA-GEETVRARYLVGADGGRS-FVRKALGIGF 178 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EE-EEEEe-CC-CeEEEEeCEEEECCCCch-HHHHhCCCCc
Confidence 3456677888888889999999999999987754 43 33432 12 235899999999999999 6888887653
No 99
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.27 E-value=4.9e-11 Score=130.28 Aligned_cols=198 Identities=19% Similarity=0.212 Sum_probs=119.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERKQ 148 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 148 (627)
..+|||||||||.+|+.+|..+++.|++|+||||.....|.|..+.|-+...+.-.... ...+.+..+.....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~----~~ds~e~~~~dtvk--- 76 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDV----EGDSPELHFYDTVK--- 76 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccc----cCCCHHHHHHHHHh---
Confidence 45799999999999999999999999999999999766677766655544332111000 00011111111000
Q ss_pred HHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCce
Q 006891 149 VIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQ 228 (627)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~ 228 (627)
-...+..+- .-..+.........+|. .+|.+..+..+.....+.+... ... -.+..+-
T Consensus 77 ---g~d~l~dqd---------~i~~~~~~ap~~v~~Le-~~G~~f~r~~~G~~~~r~fgg~----~~~-----rt~~~~~ 134 (562)
T COG1053 77 ---GGDGLGDQD---------AVEAFADEAPEAVDELE-KWGVPFSRTEDGRIYQRRFGGH----SKP-----RTCFAAD 134 (562)
T ss_pred ---ccCCcCCHH---------HHHHHHHhhHHHHHHHH-HhCCCcccCCCccccccccCCc----CCC-----cceecCC
Confidence 001111000 00111112223334443 5666655555543333333332 100 1122222
Q ss_pred echHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 229 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
-....++..|.+.+.+ ++.+++.+..+++|..++++ .|.||+..+..+++...+++|.||+|||+.+
T Consensus 135 ~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~-~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 135 KTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGG-GVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred CCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCC-cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 3345678888888888 67789999999999988765 6999999887888878889999999999887
No 100
>PRK06126 hypothetical protein; Provisional
Probab=99.27 E-value=3.3e-10 Score=126.14 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=56.9
Q ss_pred echHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
++...+...|.+.+.+. |++++++++|+++..+++ .|+ +++.+..+|+..+++||+||.|.|.+| .+++.+++.
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S-~VR~~lgi~ 197 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD--GVT-ATVEDLDGGESLTIRADYLVGCDGARS-AVRRSLGIS 197 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC--eEE-EEEEECCCCcEEEEEEEEEEecCCcch-HHHHhcCCc
Confidence 33455667777777764 899999999999998774 454 556554556656899999999999999 688888754
No 101
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.27 E-value=2.2e-10 Score=122.12 Aligned_cols=70 Identities=20% Similarity=0.120 Sum_probs=54.2
Q ss_pred eechHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 228 QMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
.++...+...|.+.+++.| ++++ +++|+++..+++ .+ .|++. +| .+++||.||.|+|.++. +++.++..
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~--~~-~v~~~---~g--~~~~a~~vI~adG~~S~-vr~~~~~~ 176 (388)
T PRK07608 107 IVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD--AA-TLTLA---DG--QVLRADLVVGADGAHSW-VRSQAGIK 176 (388)
T ss_pred EEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC--eE-EEEEC---CC--CEEEeeEEEEeCCCCch-HHHhcCCC
Confidence 4667888899999999888 9998 899999987664 33 24442 34 37999999999999985 88877765
Q ss_pred C
Q 006891 307 V 307 (627)
Q Consensus 307 ~ 307 (627)
.
T Consensus 177 ~ 177 (388)
T PRK07608 177 A 177 (388)
T ss_pred c
Confidence 3
No 102
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.26 E-value=3.4e-10 Score=118.73 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=57.4
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
++...+...|.+.+++.|++++++++|+++..+++ .++ +.+.+..+|+..+++||.||-|.|.+| .+++.++..
T Consensus 108 ~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~-~~~~~~~~g~~~~i~adlvVgADG~~S-~vR~~l~~~ 181 (356)
T PF01494_consen 108 IDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVT-VVVRDGEDGEEETIEADLVVGADGAHS-KVRKQLGID 181 (356)
T ss_dssp EEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEE-EEEEETCTCEEEEEEESEEEE-SGTT--HHHHHTTGG
T ss_pred hhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccc-cccccccCCceeEEEEeeeecccCccc-chhhhcccc
Confidence 44567888899999999999999999999998875 444 344454567667899999999999999 777777654
No 103
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.26 E-value=5.4e-11 Score=125.50 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
....++..|.+.+++.|++++++++|.+|..+++ .+..|.+. + ...+.||.||+|+|+-+
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~~---~--~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--GVFGVKTK---N--GGEYEADAVILATGGKS 166 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--EEEEEEET---T--TEEEEESEEEE----SS
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--ceeEeecc---C--cccccCCEEEEecCCCC
Confidence 4567889999999999999999999999998774 66667662 2 24899999999999765
No 104
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.25 E-value=3.3e-11 Score=112.17 Aligned_cols=67 Identities=30% Similarity=0.382 Sum_probs=50.8
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec---CCC---cEEEEEcCeEEeccCCCh
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG---KEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~---~~g---~~~~i~A~~VV~AtG~~s 296 (627)
.|+..++..|+..+.+.|++|++.+.|.++...+++ +|.||.+.-. ..| +...|+||.||-|||.-+
T Consensus 93 ~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~-rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 93 ADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDD-RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp S-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSC-EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred EcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCC-eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 577889999999999999999999999999877655 9999987521 111 236899999999999876
No 105
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.25 E-value=3.5e-10 Score=120.68 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=59.6
Q ss_pred echHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
++...+...|.+.+.+. |++++++++|+++..++++ + .|.+. +|+ +++||.||.|.|.+| .+++.++...
T Consensus 109 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~-~v~~~---~g~--~~~a~~vI~AdG~~S-~vR~~~~~~~ 179 (391)
T PRK08020 109 VENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--W-ELTLA---DGE--EIQAKLVIGADGANS-QVRQMAGIGV 179 (391)
T ss_pred EEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--E-EEEEC---CCC--EEEeCEEEEeCCCCc-hhHHHcCCCc
Confidence 55667778888887776 9999999999999877643 2 24442 343 789999999999999 5888887653
Q ss_pred CCceecCcceEEEec
Q 006891 308 QPMICPSSGVHIVLP 322 (627)
Q Consensus 308 ~~~i~p~kG~~lv~~ 322 (627)
....++..+..+.++
T Consensus 180 ~~~~y~~~~~~~~~~ 194 (391)
T PRK08020 180 HGWQYRQSCMLISVK 194 (391)
T ss_pred cccCCCceEEEEEEE
Confidence 333344444444443
No 106
>PLN02985 squalene monooxygenase
Probab=99.24 E-value=4.9e-10 Score=122.64 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=57.0
Q ss_pred eechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
.++..++...|.+.+.+. |++++. .+|+++..++ + .+.||++.+ .+|+..++.||.||.|.|.+| .+++.++..
T Consensus 143 ~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~~~-~-~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S-~vR~~l~~~ 217 (514)
T PLN02985 143 SFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIEEK-G-VIKGVTYKN-SAGEETTALAPLTVVCDGCYS-NLRRSLNDN 217 (514)
T ss_pred eeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEEcC-C-EEEEEEEEc-CCCCEEEEECCEEEECCCCch-HHHHHhccC
Confidence 455678888898888776 688875 4688887765 5 788898865 456666788999999999998 788777654
No 107
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.22 E-value=1.2e-09 Score=116.23 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=54.2
Q ss_pred echHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 229 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
++...+...|.+.+.+.| ++++++++|+++..+++ .+ .|+. .+|+ .+.+|.||.|.|.++ .+++.++.+
T Consensus 103 i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~--~~-~v~~---~~g~--~~~~~~vi~adG~~S-~vr~~l~~~ 172 (385)
T TIGR01988 103 VENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD--HV-ELTL---DDGQ--QLRARLLVGADGANS-KVRQLAGIP 172 (385)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC--ee-EEEE---CCCC--EEEeeEEEEeCCCCC-HHHHHcCCC
Confidence 556778889999998888 99999999999988764 33 2444 2354 689999999999998 677777654
No 108
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.22 E-value=8e-10 Score=117.51 Aligned_cols=68 Identities=24% Similarity=0.235 Sum_probs=55.8
Q ss_pred echHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhc
Q 006891 229 MNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g 304 (627)
+.-..+...|.+.+.+.+ ++++++++|+.+..+++ .++ |++. .+|+ ++.||.||-|.|.+| .+++.++
T Consensus 101 ~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~-v~l~--~dG~--~~~a~llVgADG~~S-~vR~~~~ 169 (387)
T COG0654 101 VPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVT-VTLS--FDGE--TLDADLLVGADGANS-AVRRAAG 169 (387)
T ss_pred eEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceE-EEEc--CCCc--EEecCEEEECCCCch-HHHHhcC
Confidence 445678888888888876 89999999999999874 565 6664 1454 899999999999998 8888887
No 109
>PRK08013 oxidoreductase; Provisional
Probab=99.22 E-value=3.1e-10 Score=121.35 Aligned_cols=70 Identities=23% Similarity=0.215 Sum_probs=54.0
Q ss_pred eechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 228 QMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
.+....+...|.+.+.+. |++++++++|+++..++++ + .|.+. +|+ +++||.||-|.|.+| .+++.+++.
T Consensus 107 ~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v-~v~~~---~g~--~i~a~lvVgADG~~S-~vR~~~~~~ 177 (400)
T PRK08013 107 IIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--A-FLTLK---DGS--MLTARLVVGADGANS-WLRNKADIP 177 (400)
T ss_pred EEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--E-EEEEc---CCC--EEEeeEEEEeCCCCc-HHHHHcCCC
Confidence 345567778888888775 8999999999999887643 2 24442 343 799999999999998 888888765
No 110
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.22 E-value=4.7e-10 Score=120.68 Aligned_cols=69 Identities=23% Similarity=0.197 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 232 SRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 232 ~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
..+...|.+.+.+. |++++++++|+++..++++ + .|++.+ ++...+++||.||.|.|.+| .+++.++..
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~-~v~~~~--~~~~~~i~adlvIgADG~~S-~vR~~~~~~ 190 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--A-TVTLEI--EGKQQTLQSKLVVAADGARS-PIRQAAGIK 190 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--e-EEEEcc--CCcceEEeeeEEEEeCCCCc-hhHHHhCCC
Confidence 45667777777665 7999999999999887643 3 255542 23334799999999999999 777777654
No 111
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.21 E-value=1.1e-09 Score=116.45 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=54.6
Q ss_pred echHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 229 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
++...+...|.+.+.+ .|++++++++|+++..++++ + .|.+ .+|+ ++.||.||.|.|.++ .+++.++..
T Consensus 102 i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~-~v~~---~~g~--~~~ad~vV~AdG~~S-~vr~~l~~~ 171 (382)
T TIGR01984 102 VELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--V-RVTL---DNGQ--QLRAKLLIAADGANS-KVRELLSIP 171 (382)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--E-EEEE---CCCC--EEEeeEEEEecCCCh-HHHHHcCCC
Confidence 5677889999999888 49999999999999887643 3 2444 2343 689999999999998 588887755
No 112
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.20 E-value=2.7e-10 Score=133.04 Aligned_cols=191 Identities=22% Similarity=0.231 Sum_probs=101.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC-CCCcCCCCCcccchhhhhhhhhccCCcchHHHHHHHHHHHH
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS-SGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVFHALEERK 147 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~-~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 147 (627)
+.++||||||||++|+++|+.+++.|++|+||||.... +|++... .+|+... ... ...+..... ..
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g----~~gi~~~---~~~-~~ds~e~~~---~D-- 77 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMG----MDGVNNA---VIP-GKAEPEDYV---AE-- 77 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCC----chhhhcc---cCC-CccCHHHHH---HH--
Confidence 45699999999999999999999999999999998753 2222111 1222100 000 001111110 10
Q ss_pred HHHHHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCc
Q 006891 148 QVIRNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDG 227 (627)
Q Consensus 148 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g 227 (627)
.+.....++.+ ..-..+...+....+++. .+|++..+..+....... . ... +.+...+
T Consensus 78 -t~~~g~gl~d~---------~~v~~~~~~a~~~i~~L~-~~Gv~f~~~~~G~~~~~~---~----~~~---~~~~~~~- 135 (897)
T PRK13800 78 -ITRANDGIVNQ---------RTVYQTATRGFAMVQRLE-RYGVKFEKDEHGEYAVRR---V----HRS---GSYVLPM- 135 (897)
T ss_pred -HHhhcCCCCCH---------HHHHHHHHhHHHHHHHHH-HcCCceeeCCCCCEeeee---e----ccC---CCccccC-
Confidence 00111111110 001111122223344554 466653211110000000 0 000 0000000
Q ss_pred eechHHHHHHHHHHHHHc----CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 228 QMNDSRLNVGLALTAALA----GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~----Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
-....+...|.+.+.+. ++.+.+++.+++|+.++ | +|.||.+.+..+|+...|.||.||+|||+++.
T Consensus 136 -~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 136 -PEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG-G-RAVGAAALNTRTGEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred -CCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC-C-EEEEEEEEecCCCcEEEEECCEEEECCCcccc
Confidence 12244555666665543 68888888888998764 7 99999987656777778999999999999874
No 113
>PRK06834 hypothetical protein; Provisional
Probab=99.20 E-value=3e-09 Score=116.05 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
..+...|.+.+++.|++++++++|+++..++++ +. |++ .+|. +++||+||.|.|.+| .+++.+|+..
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~-v~~---~~g~--~i~a~~vVgADG~~S-~vR~~lgi~~ 166 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VD-VEL---SDGR--TLRAQYLVGCDGGRS-LVRKAAGIDF 166 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EE-EEE---CCCC--EEEeCEEEEecCCCC-CcHhhcCCCC
Confidence 456777888888899999999999999987743 32 333 2343 789999999999999 6888887653
No 114
>PRK11445 putative oxidoreductase; Provisional
Probab=99.19 E-value=1.1e-08 Score=107.44 Aligned_cols=202 Identities=12% Similarity=0.087 Sum_probs=100.7
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCCC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNVQ 308 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~~ 308 (627)
++...+-..+.+ +.+.|+++++++.|+++..++++ + .|++. .+|+..+++||.||.|+|..| .+++.++....
T Consensus 96 i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~-~v~~~--~~g~~~~i~a~~vV~AdG~~S-~vr~~l~~~~~ 168 (351)
T PRK11445 96 IDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--Y-HVIFR--ADGWEQHITARYLVGADGANS-MVRRHLYPDHQ 168 (351)
T ss_pred ccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--E-EEEEe--cCCcEEEEEeCEEEECCCCCc-HHhHHhcCCCc
Confidence 556666555555 45678999999999999887644 2 24442 245445799999999999998 57666654311
Q ss_pred CceecCcceEEEecCCC-CCCCcceec-ccCCCCcEEEEEecCCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHhhhcc
Q 006891 309 PMICPSSGVHIVLPDYY-SPEGMGLIV-PKTKDGRVVFMLPWLGRTVAGTTDSDTVITLLPEPHEDEIQFILDAISDYLN 386 (627)
Q Consensus 309 ~~i~p~kG~~lv~~~~~-~~~~~~~~~-~~~~dg~~~~~~P~~g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 386 (627)
. ....+....+.... .+. ...++ +...+ ...|.+|.++...+|... +. ....+.++.+.+.+.++.
T Consensus 169 ~--~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~-~~~W~~p~~~~~~~g~~~-~~------~~~~~~~~~l~~~l~~~~- 236 (351)
T PRK11445 169 I--RKYVAIQQWFAEKHPVPF-YSCIFDNEITD-CYSWSISKDGYFIFGGAY-PM------KDGRERFETLKEKLSAFG- 236 (351)
T ss_pred h--hhEEEEEEEecCCCCCCC-cceEEeccCCC-ceEEEeCCCCcEEecccc-cc------cchHHHHHHHHHHHHhcc-
Confidence 1 11111111222111 111 11222 21223 367888987777676443 11 111223344334333321
Q ss_pred cCCCccceeeeeeeeeccccCCCCCCCCCCcccceee-ecCCCeEEE-ecChhhhHHHHHHHHHHHHHHc
Q 006891 387 VKVRRTDVLSAWSGIRPLAMDPSAKNTESISRDHVVC-EDFPGLVTI-TGGKWTTYRSMAEDAVNAAIKS 454 (627)
Q Consensus 387 ~~l~~~~i~~~~aG~Rp~~~d~~~~~~~~~~r~~~i~-~~~~gl~~~-~Gg~~t~~~~~Ae~~~~~~~~~ 454 (627)
..+ .+++..-.+. ++.+.. .... ...++.++. .+..|++.- +|+++..+-.-|+.+++.+.+.
T Consensus 237 ~~~--~~~~~~~~~~-~~~~~~-~~~~-~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 237 FQF--GKPVKTEACT-VLRPSR-WQDF-VCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ 301 (351)
T ss_pred ccc--cccccccccc-ccCccc-cccc-ccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc
Confidence 111 1122222221 111110 0000 001122222 234455544 5667888888888888887654
No 115
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.18 E-value=2.3e-09 Score=118.96 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 230 NDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
+-..+...|.+.+.+. |++++++++|+++..++++ | .|++++ .+|+..+++||+||.|.|.+| .+++.++..
T Consensus 111 ~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v-~v~~~~-~~G~~~~i~ad~vVgADG~~S-~vR~~lg~~ 183 (538)
T PRK06183 111 HQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--V-TVTLTD-ADGQRETVRARYVVGCDGANS-FVRRTLGVP 183 (538)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--E-EEEEEc-CCCCEEEEEEEEEEecCCCch-hHHHHcCCe
Confidence 3345666677777664 9999999999999988754 3 255543 246556899999999999998 688877754
No 116
>PRK07190 hypothetical protein; Provisional
Probab=99.18 E-value=2.6e-09 Score=116.50 Aligned_cols=66 Identities=23% Similarity=0.245 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
..+...|.+.+.+.|++++++++|+++.+++++ ++ +.+ .+|+ +++||+||.|+|.+| .+++.+|+.
T Consensus 109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~-v~~---~~g~--~v~a~~vVgADG~~S-~vR~~lgi~ 174 (487)
T PRK07190 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CL-TTL---SNGE--RIQSRYVIGADGSRS-FVRNHFNVP 174 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eE-EEE---CCCc--EEEeCEEEECCCCCH-HHHHHcCCC
Confidence 455666777888899999999999999987754 32 333 2343 799999999999988 788887765
No 117
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.18 E-value=1.3e-09 Score=116.78 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=54.6
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
.++...+...|.+.+.+.|++++++++|+++..++++ + .|++. +|+ ++.||.||.|+|.|| .+++.++..
T Consensus 108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~---~g~--~~~a~~vVgAdG~~S-~vR~~lg~~ 177 (405)
T PRK05714 108 IVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--W-LLTLA---DGR--QLRAPLVVAADGANS-AVRRLAGCA 177 (405)
T ss_pred EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--E-EEEEC---CCC--EEEeCEEEEecCCCc-hhHHhcCCC
Confidence 3455677778888888889999999999999887643 3 24442 343 789999999999999 788888765
No 118
>PRK09126 hypothetical protein; Provisional
Probab=99.17 E-value=9e-10 Score=117.55 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 231 ~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
...+...+.+.+.+ .|++++++++|+++..++++ + .|.+. +|+ ++.||.||.|.|.++ .+++.+++.
T Consensus 109 ~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~-~v~~~---~g~--~~~a~~vI~AdG~~S-~vr~~~g~~ 176 (392)
T PRK09126 109 NHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--A-QVTLA---NGR--RLTARLLVAADSRFS-ATRRQLGIG 176 (392)
T ss_pred HHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--E-EEEEc---CCC--EEEeCEEEEeCCCCc-hhhHhcCCC
Confidence 34555666666544 69999999999999886643 3 35443 343 789999999999988 677777654
No 119
>PRK07045 putative monooxygenase; Reviewed
Probab=99.16 E-value=9.1e-09 Score=109.64 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhh
Q 006891 230 NDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~ 302 (627)
.-..+...|.+.+.+ .|++++++++|+++..++++ .++.|+.. +|+ ++.+|.||-|.|.+| .+++.
T Consensus 104 ~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~---~g~--~~~~~~vIgADG~~S-~vR~~ 170 (388)
T PRK07045 104 PCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADG-TVTSVTLS---DGE--RVAPTVLVGADGARS-MIRDD 170 (388)
T ss_pred cHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCC-cEEEEEeC---CCC--EEECCEEEECCCCCh-HHHHH
Confidence 345566777777654 58999999999999987766 55566653 343 789999999999998 66664
No 120
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.15 E-value=7.1e-10 Score=120.53 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=97.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHHHHH-HHHHHHHHHH
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLKLVF-HALEERKQVI 150 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 150 (627)
+||||||+|++|+++|+.|++.|++|+||||... .++|..+.+ |+.+... . ..+..... +.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~-~~~s~~a~g----gi~~~~~---~--~ds~e~~~~d~~~------ 65 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK-KSNSYLAQA----GIAFPIL---E--GDSIRAHVLDTIR------ 65 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC-CCCcHHHcC----CcccccC---C--CCcHHHHHHHHHH------
Confidence 6999999999999999999999999999999853 222222222 2211000 0 01111111 1111
Q ss_pred HHCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceec
Q 006891 151 RNAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMN 230 (627)
Q Consensus 151 ~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~ 230 (627)
....+..+ ..-..+........+++. ..|++.... . .+.. ......+...+ ..
T Consensus 66 -~~~~~~d~---------~~v~~~~~~~~~~i~~L~-~~Gv~f~~~----~---~~~g-------~~~~r~~~~~~--~~ 118 (466)
T PRK08401 66 -AGKYINDE---------EVVWNVISKSSEAYDFLT-SLGLEFEGN----E---LEGG-------HSFPRVFTIKN--ET 118 (466)
T ss_pred -HhcCCCCH---------HHHHHHHHHHHHHHHHHH-HcCCCcccC----C---CcCC-------ccCCeEEECCC--Cc
Confidence 11111110 000111112223345554 456542110 0 0000 00111111111 12
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHH
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l 299 (627)
...++..|.+.+++.|++++++ .++.|..++ | +++||.+. + ..+.|+.||+|||+|+...
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g-~v~Gv~~~----g--~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN-G-KAYGVFLD----G--ELLKFDATVIATGGFSGLF 178 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-C-EEEEEEEC----C--EEEEeCeEEECCCcCcCCC
Confidence 3568888999999999999875 899998754 6 89888762 3 2689999999999999654
No 121
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.13 E-value=7.3e-09 Score=110.68 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 231 DSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 231 ~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
...+...+.+.+.+ .|++++++++|+++..++++ + .|++. ++ ..+.+|.||.|+|.++ .+++.++..
T Consensus 111 ~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~-~v~~~---~g--~~~~a~~vI~AdG~~S-~vr~~~~~~ 178 (395)
T PRK05732 111 LHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--V-RVTLD---DG--ETLTGRLLVAADGSHS-ALREALGID 178 (395)
T ss_pred hHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--E-EEEEC---CC--CEEEeCEEEEecCCCh-hhHHhhCCC
Confidence 34555666666655 48999999999999876643 3 24442 34 3689999999999998 588877765
No 122
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.13 E-value=8.4e-09 Score=121.63 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=55.0
Q ss_pred CccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCHHHH
Q 006891 534 KRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDKSRR 599 (627)
Q Consensus 534 ~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~w~~~~~ 599 (627)
..+|+||.||.++|+.|++. ..+..+-|||.||+||+.| ||..|...++++|+++.|-+.+++
T Consensus 505 ~~~~~~edvt~~~i~~a~~~--g~~~~~~~K~~tr~GmG~c-QGr~c~~~~~~~~a~~~~~~~~~~ 567 (985)
T TIGR01372 505 AFVDYQNDVTAKDVELAVRE--GFESVEHLKRYTTLGMATD-QGKTSNVNGLAIMAEALGKSIPEV 567 (985)
T ss_pred cccCccccCcHHHHHHHHHh--cCCCHHHHHHhhcCCCccc-CchhhHHHHHHHHHHHHCcChHhc
Confidence 46678999999999999986 4455566999999999998 799999999999999999887765
No 123
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.13 E-value=9.9e-10 Score=118.59 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDE-ASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~-~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
..++..|.+.+++.|++|+++++|++|+.++ +| +|+||...+ + ...++||.||+|||+++.+
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g-~v~gv~~~~---~-~~~i~ak~VIlAtGG~~~n 185 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDG-AHDGPLTTV---G-THRITTQALVLAAGGLGAN 185 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCC-eEEEEEEcC---C-cEEEEcCEEEEcCCCcccC
Confidence 5688899999999999999999999999863 46 888887632 2 2578999999999998753
No 124
>PRK06847 hypothetical protein; Provisional
Probab=99.12 E-value=7.6e-09 Score=109.71 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=49.6
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
.++...+...|.+.+.+.|++++++++|+++..+++ .+ .|.+. +|+ ++.+|.||.|+|.++..
T Consensus 103 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~~-~v~~~---~g~--~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 103 GIMRPALARILADAARAAGADVRLGTTVTAIEQDDD--GV-TVTFS---DGT--TGRYDLVVGADGLYSKV 165 (375)
T ss_pred cCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC--EE-EEEEc---CCC--EEEcCEEEECcCCCcch
Confidence 456678888999989889999999999999987663 33 34442 343 68999999999999844
No 125
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.11 E-value=1.1e-08 Score=114.89 Aligned_cols=76 Identities=22% Similarity=0.205 Sum_probs=55.3
Q ss_pred echHHHHHHHHHHHHHcCC--EEEcCcEEEEEEEcCCC-CeEEEEEEEec---CCCcEEEEEcCeEEeccCCChHHHhhh
Q 006891 229 MNDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEAS-NRIIGARIRNN---LSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv--~i~~~t~V~~l~~~~~g-~~v~gV~~~d~---~~g~~~~i~A~~VV~AtG~~s~~l~~~ 302 (627)
++-.++...|.+.+.+.|. ++.++++++++..++++ +.| .|++++. .+|+..+++||+||-|.|..| .+++.
T Consensus 138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S-~VR~~ 215 (634)
T PRK08294 138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARS-RVRKA 215 (634)
T ss_pred eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCCCCceEEEEeCEEEECCCCch-HHHHh
Confidence 4455677788888877764 77889999999876422 123 3666542 135446899999999999998 88888
Q ss_pred hcCC
Q 006891 303 ADQN 306 (627)
Q Consensus 303 ~g~~ 306 (627)
+|+.
T Consensus 216 lgi~ 219 (634)
T PRK08294 216 IGRE 219 (634)
T ss_pred cCCC
Confidence 8765
No 126
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.10 E-value=3.8e-09 Score=116.05 Aligned_cols=58 Identities=21% Similarity=0.376 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
..++..|.+.++++|++|+++++|++|..++ + ++.+|++. +|+ ++.||.||+|+|+|.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~-~~~gv~~~---~g~--~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-G-KAVGVKLA---DGE--KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-C-cEEEEEeC---CCC--EEEcCEEEECCChHH
Confidence 5788999999999999999999999998876 5 78888874 343 689999999999985
No 127
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.10 E-value=8e-10 Score=120.26 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=51.7
Q ss_pred ceechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
+++|...+...+.+.+.+. |++++ .+.|+++..++ + +|.||.+. +| ..+.|+.||+|||.|+..
T Consensus 95 aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-g-rV~GV~t~---dG--~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 95 AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVEN-G-RVVGVVTQ---DG--LEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-C-EEEEEEEC---CC--CEEECCEEEEeeCcchhc
Confidence 5788889999998888766 78875 67899998866 5 89999874 34 379999999999988643
No 128
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.09 E-value=1.4e-10 Score=124.71 Aligned_cols=72 Identities=29% Similarity=0.386 Sum_probs=0.0
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
++|..+...+.+.+.+.|+++++++.|.++..++ + +|+||++.+ ..| ..+|+||.||-|||. ..|....|.+
T Consensus 87 ~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~-~i~~V~~~~-~~g-~~~i~A~~~IDaTG~--g~l~~~aG~~ 158 (428)
T PF12831_consen 87 FDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-G-RITGVIVET-KSG-RKEIRAKVFIDATGD--GDLAALAGAP 158 (428)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-c-ccccccccc-ccc-ccccccccccccccc--cccccccccc
Confidence 3444555555566677899999999999999976 6 899999976 345 579999999999995 3677776654
No 129
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.09 E-value=2.9e-09 Score=114.08 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 231 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
...+...|.+.+.+. |++++++++|+++..++++ + .|++. +|+ +++||.||.|.|.+| .+++.++..
T Consensus 110 ~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~-~v~~~---~g~--~~~a~lvIgADG~~S-~vR~~~~~~ 177 (405)
T PRK08850 110 NRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--A-WLTLD---NGQ--ALTAKLVVGADGANS-WLRRQMDIP 177 (405)
T ss_pred HHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--E-EEEEC---CCC--EEEeCEEEEeCCCCC-hhHHHcCCC
Confidence 345556777776664 7999999999999887643 2 35543 344 789999999999998 778877765
No 130
>PLN02661 Putative thiazole synthesis
Probab=99.09 E-value=2.5e-09 Score=108.85 Aligned_cols=63 Identities=17% Similarity=0.094 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEe------cCCC---cEEEEEcCeEEeccCCCh
Q 006891 232 SRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRN------NLSG---KEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 232 ~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d------~~~g---~~~~i~A~~VV~AtG~~s 296 (627)
..++..|.+.+.+ .|+++++++.|.+|+.++ + ++.||.+.. ..++ +...|+||.||+|||...
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-D-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-C-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 4556677776655 689999999999999976 6 899998631 1111 234789999999999654
No 131
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.07 E-value=2.8e-09 Score=115.28 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=52.4
Q ss_pred echHHHHHHHHHHHHHcC---CEEEcCcEEEEEEEc-----CCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHh
Q 006891 229 MNDSRLNVGLALTAALAG---AAVLNHAEVISLIKD-----EASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVR 300 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~G---v~i~~~t~V~~l~~~-----~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~ 300 (627)
+....+...|.+.+.+.+ ++++++++|+++..+ +++ .-+.|++ .+|+ +++||.||-|.|.+| .++
T Consensus 114 i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~-~~v~v~~---~~g~--~i~a~llVgADG~~S-~vR 186 (437)
T TIGR01989 114 IENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS-NWVHITL---SDGQ--VLYTKLLIGADGSNS-NVR 186 (437)
T ss_pred EEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC-CceEEEE---cCCC--EEEeeEEEEecCCCC-hhH
Confidence 455667778888887765 899999999999753 112 1123444 3454 799999999999998 788
Q ss_pred hhhcCCC
Q 006891 301 KLADQNV 307 (627)
Q Consensus 301 ~~~g~~~ 307 (627)
+.+++..
T Consensus 187 ~~~gi~~ 193 (437)
T TIGR01989 187 KAANIDT 193 (437)
T ss_pred HHcCCCc
Confidence 8887664
No 132
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.06 E-value=2.7e-09 Score=112.97 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=53.2
Q ss_pred eechHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 228 QMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
.+....+...|.+.+.+.+ ++++++++|+++..++++ +. |.+. +. +++||.||.|.|.+| .+++.++..
T Consensus 100 ~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~-v~~~----~~--~~~adlvIgADG~~S-~vR~~l~~~ 169 (374)
T PRK06617 100 VVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SI-IKFD----DK--QIKCNLLIICDGANS-KVRSHYFAN 169 (374)
T ss_pred EEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EE-EEEc----CC--EEeeCEEEEeCCCCc-hhHHhcCCC
Confidence 3556788888888888875 899999999999887643 32 4442 22 799999999999998 777777654
No 133
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.05 E-value=3.3e-09 Score=115.78 Aligned_cols=56 Identities=29% Similarity=0.331 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCC
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~ 294 (627)
..++.+|++.++++|++|+++++|++|..++ | +.++++.. .| ..+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g-~g~~~~~~---~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEG-G-KGVGVRTS---DG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeC-C-cceEEecc---cc--ceeccceeEecCch
Confidence 5789999999999999999999999999987 5 54444432 23 47889999999888
No 134
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.05 E-value=4.2e-08 Score=104.66 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEE-cCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIK-DEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~-~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
..+...|++.+.+.|++++++++|+++.. +++ ...|++. .+|+..+++||.||-|.|.+| .+++.++..
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~---~~~V~~~--~~G~~~~i~ad~vVgADG~~S-~vR~~~~~~ 172 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHDFDSD---RPYVTYE--KDGEEHRLDCDFIAGCDGFHG-VSRASIPAG 172 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCC---ceEEEEE--cCCeEEEEEeCEEEECCCCCC-chhhhcCcc
Confidence 45667788888889999999999999976 332 2345553 246556899999999999998 777777643
No 135
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.05 E-value=9.6e-09 Score=102.33 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=56.1
Q ss_pred echHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhc
Q 006891 229 MNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g 304 (627)
++..++++.|.+.|.. .+|++. .-.|.+|..++ | .|.||+.++ ..|++.+..|...|+|.|-|| ++++.+-
T Consensus 144 FhnGRFvq~lR~ka~slpNV~~e-eGtV~sLlee~-g-vvkGV~yk~-k~gee~~~~ApLTvVCDGcfS-nlRrsL~ 215 (509)
T KOG1298|consen 144 FHNGRFVQRLRKKAASLPNVRLE-EGTVKSLLEEE-G-VVKGVTYKN-KEGEEVEAFAPLTVVCDGCFS-NLRRSLC 215 (509)
T ss_pred eeccHHHHHHHHHHhcCCCeEEe-eeeHHHHHhcc-C-eEEeEEEec-CCCceEEEecceEEEecchhH-HHHHHhc
Confidence 4567899999887765 478875 45788888876 6 899999988 455568889999999999999 6776653
No 136
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.05 E-value=6.7e-09 Score=110.41 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 232 SRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 232 ~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
..+...|.+.+.+ .|++++++++|+++..++++ ++ |++. +|. +++||.||.|.|.+| .+++.++..
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~-v~~~---~g~--~~~~~lvIgADG~~S-~vR~~~gi~ 176 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NR-VTLE---SGA--EIEAKWVIGADGANS-QVRQLAGIG 176 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EE-EEEC---CCC--EEEeeEEEEecCCCc-hhHHhcCCC
Confidence 3455566666555 47999999999999987643 32 5553 343 799999999999998 777777654
No 137
>PRK07538 hypothetical protein; Provisional
Probab=99.04 E-value=3.9e-08 Score=105.64 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=53.9
Q ss_pred eechHHHHHHHHHHHHH-cCC-EEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcC
Q 006891 228 QMNDSRLNVGLALTAAL-AGA-AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~-~Gv-~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~ 305 (627)
.++...+...|.+.+.+ .|. .++++++|+++..++++ .+ +.+.+..+|+..+++||.||.|.|.+| .+++.++.
T Consensus 98 ~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~--~~~~~~~~g~~~~~~adlvIgADG~~S-~vR~~l~~ 173 (413)
T PRK07538 98 SIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TV--VFLGDRAGGDLVSVRGDVLIGADGIHS-AVRAQLYP 173 (413)
T ss_pred EEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eE--EEEeccCCCccceEEeeEEEECCCCCH-HHhhhhcC
Confidence 35667787888888766 474 69999999999887654 33 344432334446899999999999998 67666654
Q ss_pred C
Q 006891 306 N 306 (627)
Q Consensus 306 ~ 306 (627)
.
T Consensus 174 ~ 174 (413)
T PRK07538 174 D 174 (413)
T ss_pred C
Confidence 3
No 138
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.02 E-value=1.7e-08 Score=112.41 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 231 DSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
-..+...|.+.+.+. |++++++++|+++..++++ ++ +.+.+ .++ ..+++||.||.|.|.++ .+++.+|++.
T Consensus 124 q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--v~-v~~~~-~~g-~~~i~ad~vVgADG~~S-~vR~~lg~~~ 195 (547)
T PRK08132 124 QYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG--VT-LTVET-PDG-PYTLEADWVIACDGARS-PLREMLGLEF 195 (547)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE--EE-EEEEC-CCC-cEEEEeCEEEECCCCCc-HHHHHcCCCC
Confidence 345666777777765 7999999999999987643 32 44443 233 24789999999999998 5888887653
No 139
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.01 E-value=6.4e-08 Score=101.92 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=83.6
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQNV 307 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~~ 307 (627)
.++...+-..+.+.+. ..++.+++|+++ +.+ . |++. +|+ ++.|+.||.|.|..+..... .
T Consensus 85 ~I~r~~f~~~l~~~l~---~~i~~~~~V~~v--~~~--~---v~l~---dg~--~~~A~~VI~A~G~~s~~~~~-~---- 144 (370)
T TIGR01789 85 SMTSTRFHEGLLQAFP---EGVILGRKAVGL--DAD--G---VDLA---PGT--RINARSVIDCRGFKPSAHLK-G---- 144 (370)
T ss_pred EEEHHHHHHHHHHhhc---ccEEecCEEEEE--eCC--E---EEEC---CCC--EEEeeEEEECCCCCCCcccc-c----
Confidence 4555566666654432 236678999988 332 2 4553 343 79999999999987643222 1
Q ss_pred CCceecCcceEEEecCCCCCCCcceec----ccCCCCcEEEEEecC-CcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHh
Q 006891 308 QPMICPSSGVHIVLPDYYSPEGMGLIV----PKTKDGRVVFMLPWL-GRTVAGTTDSDTVITLLPEPHEDEIQFILDAIS 382 (627)
Q Consensus 308 ~~~i~p~kG~~lv~~~~~~~~~~~~~~----~~~~dg~~~~~~P~~-g~~~iG~t~~~~~~~~~~~~~~~~~~~ll~~~~ 382 (627)
...-..|..+.+..++.+.. ..++ ++....+.+|++|.. +..+|..|.-. ..+..+.++++.-+....
T Consensus 145 --~~Q~f~G~~~r~~~p~~~~~-~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s----~~~~l~~~~l~~~l~~~~ 217 (370)
T TIGR01789 145 --GFQVFLGREMRLQEPHGLEN-PIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYA----DDPLLDRNALSQRIDQYA 217 (370)
T ss_pred --eeeEEEEEEEEEcCCCCCCc-cEEEeeeccCCCCceEEEECcCCCCeEEEEEEecc----CCCCCCHHHHHHHHHHHH
Confidence 12334566566655543332 2222 112334788999976 67778655311 113344555544333221
Q ss_pred hhcccCCCccceeeeeeeeecccc
Q 006891 383 DYLNVKVRRTDVLSAWSGIRPLAM 406 (627)
Q Consensus 383 ~~~~~~l~~~~i~~~~aG~Rp~~~ 406 (627)
+- ..+....|++.-.|+.|++.
T Consensus 218 ~~--~g~~~~~i~~~e~g~iPm~~ 239 (370)
T TIGR01789 218 RA--NGWQNGTPVRHEQGVLPVLL 239 (370)
T ss_pred HH--hCCCceEEEEeeeeEEeeec
Confidence 11 24445567777779999864
No 140
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.00 E-value=6e-09 Score=112.43 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEc-CC--CCeEEEEEEEecCCCcEEEE-EcCeEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKD-EA--SNRIIGARIRNNLSGKEFDT-YAKVVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~-~~--g~~v~gV~~~d~~~g~~~~i-~A~~VV~AtG~~s~~ 298 (627)
..++..|.+.++++||+|+++++|++|..+ ++ + +|+||.+.....++...+ .+|.||+++|.++++
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~-~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKK-TATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCce-EEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 678899999999999999999999999985 22 4 899999863112222333 459999999998865
No 141
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.00 E-value=5.8e-09 Score=111.48 Aligned_cols=66 Identities=11% Similarity=0.116 Sum_probs=49.1
Q ss_pred eechHHHHHHHHHHHHHcC-CEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhh
Q 006891 228 QMNDSRLNVGLALTAALAG-AAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKL 302 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~G-v~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~ 302 (627)
.++...+...|.+.+.+.| ++++++++|+++..++++ +. |+. .+|+ ++.||.||.|.|.+|. +++.
T Consensus 105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~-v~~---~~g~--~~~ad~vV~AdG~~S~-~r~~ 171 (396)
T PRK08163 105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VT-VFD---QQGN--RWTGDALIGCDGVKSV-VRQS 171 (396)
T ss_pred EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eE-EEE---cCCC--EEecCEEEECCCcChH-HHhh
Confidence 3566778888888887775 899999999999876543 32 333 2343 6899999999999994 4443
No 142
>PRK06996 hypothetical protein; Provisional
Probab=98.99 E-value=1.1e-08 Score=109.24 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=53.3
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
.++...+...|.+.+.+.|++++++++++++..++++ |+ +.+.+ .+| ..+++||.||.|.|..+..+.+.++..
T Consensus 111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~-v~~~~-~~g-~~~i~a~lvIgADG~~~s~~r~~~~~~ 184 (398)
T PRK06996 111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VT-LALGT-PQG-ARTLRARIAVQAEGGLFHDQKADAGDS 184 (398)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EE-EEECC-CCc-ceEEeeeEEEECCCCCchHHHHHcCCC
Confidence 4556788899999999999999999999999876644 22 33322 122 247999999999997544555666554
No 143
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.99 E-value=2.3e-09 Score=109.84 Aligned_cols=69 Identities=22% Similarity=0.126 Sum_probs=50.9
Q ss_pred HHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCc--EEEEEcCeEEeccCC-ChHHHhhhhcC
Q 006891 236 VGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGK--EFDTYAKVVVNAAGP-FCDSVRKLADQ 305 (627)
Q Consensus 236 ~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~--~~~i~A~~VV~AtG~-~s~~l~~~~g~ 305 (627)
..++..+.+. |++|+.++.|++|+.+.++.+++||++.+ .++. ...+.+|.||+|+|+ .+..|+...|+
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~-~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVD-NDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEE-TTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeee-cCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 4455555566 99999999999998752233999999998 3443 456788999999997 46777776665
No 144
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.95 E-value=1.3e-08 Score=99.00 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=45.8
Q ss_pred CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh---HHHhhhhc
Q 006891 246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC---DSVRKLAD 304 (627)
Q Consensus 246 Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s---~~l~~~~g 304 (627)
-++|..+++|++|..++ | +|.||+..| .+|+...+.++.||+|+|+|+ ..+++..+
T Consensus 159 ~~ki~~nskvv~il~n~-g-kVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~ 217 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNN-G-KVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYG 217 (477)
T ss_pred HHhhhhcceeeeeecCC-C-eEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhC
Confidence 37899999999999755 7 999999988 788878899999999999876 33444433
No 145
>PRK07588 hypothetical protein; Provisional
Probab=98.94 E-value=2.7e-08 Score=106.16 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhh
Q 006891 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~ 303 (627)
.-..+...|.+. ...|++++++++|+++..+++ .+. |++. +|+ ++.+|.||.|.|.+| .+++..
T Consensus 101 ~r~~l~~~L~~~-~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~---~g~--~~~~d~vIgADG~~S-~vR~~~ 164 (391)
T PRK07588 101 PRGDLAAAIYTA-IDGQVETIFDDSIATIDEHRD--GVR-VTFE---RGT--PRDFDLVIGADGLHS-HVRRLV 164 (391)
T ss_pred EHHHHHHHHHHh-hhcCeEEEeCCEEeEEEECCC--eEE-EEEC---CCC--EEEeCEEEECCCCCc-cchhhc
Confidence 334555555553 345899999999999988764 332 4442 354 578999999999998 556543
No 146
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.94 E-value=3.8e-08 Score=103.06 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCC-hHHHhhhh
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLA 303 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~-s~~l~~~~ 303 (627)
.++..+|.+.++++|++++.+++|+++..++ + ++++|.+.+ +....+.||.||+|+|+| +..|.+..
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~-~v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-N-RVTRIHTRN---HRDIPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-C-eEEEEEecC---CccceEECCEEEEccCCCcCHHHHhhc
Confidence 5788899999999999999999999999876 4 788776532 323589999999999999 88887654
No 147
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.91 E-value=2.7e-08 Score=109.69 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
..++.+|.+.++++|++|+++++|++|..++ + ++++|++. +|+ ++.||.||+|++...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~-~~~~V~~~---~g~--~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-G-RATAVHLA---DGE--RLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-C-EEEEEEEC---CCC--EEECCEEEECCcHHH
Confidence 5788999999999999999999999999876 5 78888774 343 689999999999743
No 148
>PRK06753 hypothetical protein; Provisional
Probab=98.90 E-value=2.3e-07 Score=98.26 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=46.6
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcCC
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQN 306 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~~ 306 (627)
++-..+...|.+.+. +.+++++++|+++..+++ .+ .|++. +|+ ++++|.||.|.|.+| .+++.++..
T Consensus 95 i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~--~v-~v~~~---~g~--~~~~~~vigadG~~S-~vR~~~~~~ 161 (373)
T PRK06753 95 LHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETD--KV-TIHFA---DGE--SEAFDLCIGADGIHS-KVRQSVNAD 161 (373)
T ss_pred ccHHHHHHHHHHhCC--CceEEECCEEEEEEecCC--cE-EEEEC---CCC--EEecCEEEECCCcch-HHHHHhCCC
Confidence 444556566655443 468999999999987653 33 24442 343 689999999999998 777776643
No 149
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.90 E-value=2.3e-08 Score=103.78 Aligned_cols=189 Identities=18% Similarity=0.146 Sum_probs=108.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCCcccchhhhhhhhhccCCcchHH-HHHHHHHHHHHHHH
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFNLDYGQLK-LVFHALEERKQVIR 151 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~~i~~g~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 151 (627)
||+|||+|++|+++|+.|++. ++|+||-|.....++|.+..|-|...+.-.. +.+ .+...+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~D---------s~~~Hv~DTL~A------ 72 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDD---------SPELHVADTLAA------ 72 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCC---------CHHHHHHHHHHh------
Confidence 999999999999999999988 9999999998877777777655543221100 111 11111111
Q ss_pred HCCCCcccCCCccccCCchhHHHHHHHHHHHHHhhcCCCCCCccccCHHHHHhhCCccccccccCCceEEEEecCceech
Q 006891 152 NAPHLSNALPCMTPCFDWFEVVYYWVGLKMYDLVAGRHLLHLSRYYSAQESAELFPTLAMKAKDRSLKGAVVYYDGQMND 231 (627)
Q Consensus 152 ~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~l~~~~~~~~~p~l~~~~~~~~~~g~~~~~~g~~~~ 231 (627)
...++... .-......+....+++. ..|++..+.....-...++-. ......+. ..+ ...
T Consensus 73 -G~glcD~~---------aV~~iv~~~~~ai~~Li-~~Gv~FDr~~~g~~~lt~Egg-------HS~rRIlH-~~~-~TG 132 (518)
T COG0029 73 -GAGLCDEE---------AVEFIVSEAPEAIEWLI-DLGVPFDRDEDGRLHLTREGG-------HSRRRILH-AAD-ATG 132 (518)
T ss_pred -cCCCCcHH---------HHHHHHHhHHHHHHHHH-HcCCCCcCCCCCceeeeeecc-------cCCceEEE-ecC-Ccc
Confidence 11111110 00011112223334443 456552221111000000000 00001111 122 334
Q ss_pred HHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHH
Q 006891 232 SRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (627)
Q Consensus 232 ~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l 299 (627)
..++..|.+.+.+ .+++++.++.+.+|+.+++. .+.||.+.+ .+++...+.|+.||+|||+.+.-.
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-~~~Gv~~~~-~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-GVAGVLVLN-RNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc-eEeEEEEec-CCCeEEEEecCeEEEecCCCcccc
Confidence 6778888888877 59999999999999998853 566999976 222457899999999999987443
No 150
>PRK07208 hypothetical protein; Provisional
Probab=98.88 E-value=4.3e-08 Score=107.53 Aligned_cols=62 Identities=23% Similarity=0.192 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCC
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~ 295 (627)
..+...+.+.+.+.|++|+++++|++|..++++ .+++++..+ .+|....+.||.||.|+.++
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~-~v~~~~~~~-~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDG-RIAVVVVND-TDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCc-EEEEEEEEc-CCCCEEEEEcCEEEECCCHH
Confidence 467788888888999999999999999998755 455554432 33444568999999998875
No 151
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.88 E-value=5.7e-08 Score=107.70 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=51.4
Q ss_pred HHHHHHHH-HcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCC-ChHHHhhhhcCC
Q 006891 236 VGLALTAA-LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP-FCDSVRKLADQN 306 (627)
Q Consensus 236 ~~l~~~a~-~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~-~s~~l~~~~g~~ 306 (627)
..++..+. ..|++|+.++.|++|+.++ + +++||++.+ ..+....+.+|.||+|+|+ ++.+|+...|+.
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~-ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFEG-N-RATGVEFKK-GGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEecC-C-eEEEEEEEe-CCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 34445555 4579999999999999975 6 899999875 2222334578999999998 888988877754
No 152
>PTZ00367 squalene epoxidase; Provisional
Probab=98.87 E-value=2e-07 Score=102.86 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.++||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 153
>PLN02612 phytoene desaturase
Probab=98.86 E-value=3.2e-06 Score=94.12 Aligned_cols=60 Identities=13% Similarity=0.071 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
+..++..+.+..++.|++|+++++|++|..+++| ++++|++. +|+ .+.||.||+|+....
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g-~v~~v~~~---~G~--~~~ad~VI~a~p~~~ 366 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDG-TVKHFLLT---NGS--VVEGDVYVSATPVDI 366 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCC-cEEEEEEC---CCc--EEECCEEEECCCHHH
Confidence 3678889998888899999999999999987666 77777763 353 689999999997633
No 154
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.86 E-value=2.4e-08 Score=108.64 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=51.3
Q ss_pred ceechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
+++|+..+...+.+.+++. |++++ ...|+++..++++ ++.||.+. +|. .+.|+.||+|||.|.
T Consensus 91 aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g-~V~GV~t~---~G~--~I~Ad~VILATGtfL 154 (617)
T TIGR00136 91 AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDND-EIKGVVTQ---DGL--KFRAKAVIITTGTFL 154 (617)
T ss_pred HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCC-cEEEEEEC---CCC--EEECCEEEEccCccc
Confidence 6889999999999988887 67776 4578888776446 89999884 343 799999999999994
No 155
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.85 E-value=1.6e-08 Score=104.71 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=47.4
Q ss_pred ceechHHHHHHHHHHHHH-cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 227 GQMNDSRLNVGLALTAAL-AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~-~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
.++|-..+-..+.+.+.+ .+++++ ..+|++|..++ + +|.||++. +|. .+.||.||+|||.|.
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~-~v~GV~~~---~g~--~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN-G-KVKGVVTK---DGE--EIEADAVVLATGTFL 152 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-T-EEEEEEET---TSE--EEEECEEEE-TTTGB
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC-C-eEEEEEeC---CCC--EEecCEEEEeccccc
Confidence 357778888888888877 467775 68999999977 6 99999884 454 899999999999955
No 156
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.84 E-value=5.7e-09 Score=112.60 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=50.5
Q ss_pred CceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 226 DGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 226 ~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
..++|...+-..|.+.|++.||+++.. .|+++..+++| .|++|++. +| .+++||.||.|+|..+.
T Consensus 148 ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g-~i~~v~~~---~g--~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 148 AYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDG-RITAVRLD---DG--RTIEADFFIDASGRRSL 212 (454)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTS-EEEEEEET---TS--EEEEESEEEE-SGGG-C
T ss_pred eEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCC-CEEEEEEC---CC--CEEEEeEEEECCCccch
Confidence 446888999999999999999999877 58888888777 89888874 34 48999999999998763
No 157
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.83 E-value=2.9e-08 Score=105.81 Aligned_cols=57 Identities=25% Similarity=0.252 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
...+...+.+.+++.|++++++++|+++..+++ .+.|++ ++ ..+.||.||+|+|.++
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~---~~~v~~----~~--~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDN---GFGVET----SG--GEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC---eEEEEE----CC--cEEEcCEEEECCCCcc
Confidence 456788888899999999999999999977552 233443 22 2689999999999876
No 158
>PRK05868 hypothetical protein; Validated
Probab=98.83 E-value=2.5e-07 Score=97.86 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhc
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g 304 (627)
...+...+. .+...|++++++++|+++..+++ .| .|++. +|+ +++||.||-|.|.+| .+++.+.
T Consensus 104 R~~L~~~l~-~~~~~~v~i~~~~~v~~i~~~~~--~v-~v~~~---dg~--~~~adlvIgADG~~S-~vR~~~~ 167 (372)
T PRK05868 104 RDDLVELLY-GATQPSVEYLFDDSISTLQDDGD--SV-RVTFE---RAA--AREFDLVIGADGLHS-NVRRLVF 167 (372)
T ss_pred HHHHHHHHH-HhccCCcEEEeCCEEEEEEecCC--eE-EEEEC---CCC--eEEeCEEEECCCCCc-hHHHHhc
Confidence 344544443 34457999999999999987653 33 25553 343 688999999999998 7777653
No 159
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.82 E-value=8e-08 Score=102.30 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcC
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~ 305 (627)
..+...|.+.+.+.|+.++++++++.+...++. . .+|++.+ +|+..+++||.||-|.|.+| .+++.++.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~-~-~~V~~~~--~g~~~~i~adlvIGADG~~S-~VR~~l~~ 171 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGD-R-PYVTFER--DGERHRLDCDFIAGCDGFHG-VSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCC-c-cEEEEEE--CCeEEEEEeCEEEECCCCch-hhHHhcCc
Confidence 456677888888889999999988887653322 2 3466641 45445799999999999999 67777654
No 160
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.82 E-value=6e-08 Score=98.75 Aligned_cols=71 Identities=31% Similarity=0.500 Sum_probs=57.6
Q ss_pred CceEEEEecCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 217 SLKGAVVYYDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 217 ~~~g~~~~~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
...+++.|.-|.+ ..+..++++.++++|++|++...|.+|..|+ | +++||.+.| |. +++++.||-.++.|-
T Consensus 251 ~~~g~~~Yp~GG~--Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-g-ka~GV~L~d---G~--ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 251 GHKGGWGYPRGGM--GAVSFAIAEGAKRAGAEIFTKATVQSILLDS-G-KAVGVRLAD---GT--EVRSKIVVSNATPWD 321 (561)
T ss_pred ccCCcccCCCCCh--hHHHHHHHHHHHhccceeeehhhhhheeccC-C-eEEEEEecC---Cc--EEEeeeeecCCchHH
Confidence 3345555443332 5677899999999999999999999999987 7 999999964 64 788999999999995
No 161
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.81 E-value=9.1e-08 Score=103.32 Aligned_cols=61 Identities=18% Similarity=0.082 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 232 SRLNVGLALTAALAGAA--VLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~--i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
..+...|...+...|+. |+++++|+++..++++ +-|++.+ .++...+..+|.||+|+|.++
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~---w~V~~~~-~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK---WRVQSKN-SGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe---EEEEEEc-CCCceEEEEcCEEEEeccCCC
Confidence 56777888888889987 8999999999886533 3355543 122333567899999999875
No 162
>PRK07233 hypothetical protein; Provisional
Probab=98.81 E-value=5.9e-06 Score=89.39 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCC
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~ 295 (627)
..+...|.+.+.+.|++|+++++|++|..++ + +++++.. +++ .+.||.||+|+...
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~-~-~~~~~~~----~~~--~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDG-G-GVTGVEV----DGE--EEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC-C-ceEEEEe----CCc--eEECCEEEECCCHH
Confidence 5688899999999999999999999999876 4 5554442 233 68999999999863
No 163
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.80 E-value=6.5e-07 Score=95.79 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=51.8
Q ss_pred echHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhcC
Q 006891 229 MNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLADQ 305 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g~ 305 (627)
++...+...|.+.+.+. |++++++++|+++..+++ .+ .|++.+ .++ ...+.||.||-|.|.+| .+++.++.
T Consensus 104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~--~v-~v~~~~-~~~-~~~~~adlvIgADG~~S-~vR~~~~~ 175 (400)
T PRK06475 104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGN--SI-TATIIR-TNS-VETVSAAYLIACDGVWS-MLRAKAGF 175 (400)
T ss_pred ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCC--ce-EEEEEe-CCC-CcEEecCEEEECCCccH-hHHhhcCC
Confidence 55677888888887664 899999999999988664 33 244433 122 23689999999999999 67776643
No 164
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.78 E-value=3e-07 Score=100.06 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
+..++..+.+.+++.|++|+++++|++|..+++| +++||++.+...++..++.||.||+|+.+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~-~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDG-SVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCC-CEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 4678888988888899999999999999876666 7889988641111222689999999998743
No 165
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.77 E-value=3.8e-07 Score=100.33 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCC
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF 295 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~ 295 (627)
..+..+|.+.++++|++|+++++|++|..++ + ++.+|++.+..+++..++.||.||.++.++
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~-~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-G-RAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-C-eEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 5688999999999999999999999999876 5 778888754222323478999999999975
No 166
>PRK02106 choline dehydrogenase; Validated
Probab=98.77 E-value=2.2e-07 Score=103.65 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=46.8
Q ss_pred HcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCC-hHHHhhhhcCC
Q 006891 244 LAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLADQN 306 (627)
Q Consensus 244 ~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~-s~~l~~~~g~~ 306 (627)
..+++|+.++.|++|+.++ + +++||++.+ ..+....+.+|.||+|+|++ +..|+...|+.
T Consensus 213 ~~nl~i~~~a~V~rI~~~~-~-~a~GV~~~~-~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG 273 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG-K-RAVGVEYER-GGGRETARARREVILSAGAINSPQLLQLSGIG 273 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC-C-eEEEEEEEe-CCcEEEEEeeeeEEEccCCCCCHHHHhhcCCC
Confidence 4579999999999999975 5 899999876 33344456789999999976 56777666654
No 167
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=1.9e-07 Score=103.80 Aligned_cols=67 Identities=19% Similarity=0.150 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
...++..|.+.+.+.|+++++++.+++|+.+++| +|+||++.+..+|+...|+||.||+|||+++..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDG-AVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCC-eEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 4678889998888999999999999999987557 999999876567777789999999999998853
No 168
>PRK07236 hypothetical protein; Provisional
Probab=98.73 E-value=1.3e-07 Score=100.55 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=33.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
+...||+|||||++|+++|+.|++.|++|+|+||.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 456899999999999999999999999999999985
No 169
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.72 E-value=1.7e-07 Score=90.12 Aligned_cols=58 Identities=22% Similarity=0.146 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
...+...+...+++.+.+++++++|+++.+++++ +-|+++ ++ .++.|+.||+|||.++
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~---w~v~~~---~~--~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG---WTVTTR---DG--RTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT---EEEEET---TS---EEEEEEEEE---SSC
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE---EEEEEE---ec--ceeeeeeEEEeeeccC
Confidence 3456667777888899999999999999998865 335553 34 4788999999999875
No 170
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.72 E-value=6.2e-07 Score=95.95 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
..+..++.+.+...|++++++++|++|..+++| ++++|++. +|+ +++|+.||.....|...
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g-~~~~V~~~---~Ge--~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENG-KVCGVKSE---GGE--VAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCC-eEEEEEEC---CCc--EEECCEEEECccccccc
Confidence 578899999999999999999999999988666 78888774 354 68999999977777543
No 171
>PLN02487 zeta-carotene desaturase
Probab=98.68 E-value=1.3e-05 Score=88.39 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CCC-eEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 233 RLNVGLALTAALAGAAVLNHAEVISLIKDE--ASN-RIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 233 ~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~--~g~-~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
.+...+++..+++|++|+++++|.+|..+. +|+ +++||++.+ .++...+.||.||.|++.+.
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHHH
Confidence 477888999999999999999999999873 221 488998842 22334688999999999874
No 172
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.66 E-value=7.4e-07 Score=97.14 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=46.4
Q ss_pred cCCEEEcCcEEEEEEEcCCC-CeEEEEEEEecCCCcEEEEEcCeEEeccCCC-hHHHhhhh
Q 006891 245 AGAAVLNHAEVISLIKDEAS-NRIIGARIRNNLSGKEFDTYAKVVVNAAGPF-CDSVRKLA 303 (627)
Q Consensus 245 ~Gv~i~~~t~V~~l~~~~~g-~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~-s~~l~~~~ 303 (627)
-+++++.++.|++|..++++ .+|++|.+.|..+|+..+++||.||+|+|+- +..|+-..
T Consensus 227 ~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 227 ERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNS 287 (544)
T ss_pred CCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhC
Confidence 35999999999999987532 2799999988546778889999999999964 45555443
No 173
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.64 E-value=3.5e-07 Score=89.61 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
..++||+|||+|.+|+.+|.+||.+|.+|+|+|+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 457999999999999999999999999999999973
No 174
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.59 E-value=2.4e-07 Score=93.31 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=60.8
Q ss_pred eechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec---CCC-------cEEEEEcCeEEeccCCCh-
Q 006891 228 QMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---LSG-------KEFDTYAKVVVNAAGPFC- 296 (627)
Q Consensus 228 ~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~---~~g-------~~~~i~A~~VV~AtG~~s- 296 (627)
.+.-..++..|-+.|++.|++|+-+..+.+++.+++| .|.||.+.|. .+| +.-++.|+..|.|-|...
T Consensus 179 vv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edg-sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 179 VVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDG-SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred EEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCC-cEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence 4566789999999999999999999999999999989 9999987652 122 224789999999998654
Q ss_pred --HHHhhhhcC
Q 006891 297 --DSVRKLADQ 305 (627)
Q Consensus 297 --~~l~~~~g~ 305 (627)
.++.+..++
T Consensus 258 Lskqi~kkf~L 268 (621)
T KOG2415|consen 258 LSKQIIKKFDL 268 (621)
T ss_pred hHHHHHHHhCc
Confidence 555555544
No 175
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.58 E-value=5e-06 Score=88.34 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
.++...+.+.+++.|++++++++|+++..++ + ++..+.. .+++...+.||.||+|+|.+..+
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~-~V~~v~~---~~g~~~~i~AD~VVLAtGrf~s~ 320 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG-G-RVTAVWT---RNHGDIPLRARHFVLATGSFFSG 320 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-C-EEEEEEe---eCCceEEEECCEEEEeCCCcccC
Confidence 4667788888889999999999999998876 4 6766553 23555689999999999987543
No 176
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.57 E-value=8.9e-07 Score=90.61 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
|||+|||||++|+++|..|++.|.+|+|||+++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 34 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP 34 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 6999999999999999999999999999999874
No 177
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.57 E-value=1.5e-06 Score=94.74 Aligned_cols=39 Identities=38% Similarity=0.607 Sum_probs=35.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC-CCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~-~~~ 107 (627)
+..|||+|||||++|+.+|+.|+++|++|+|||+++ +++
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG 42 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGG 42 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccc
Confidence 557999999999999999999999999999999964 443
No 178
>PLN02785 Protein HOTHEAD
Probab=98.55 E-value=1.9e-06 Score=95.68 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=46.8
Q ss_pred HHHHHcCCEEEcCcEEEEEEEcCCC--CeEEEEEEEecCCCcEEEE-----EcCeEEeccCCC-hHHHhhhhcCC
Q 006891 240 LTAALAGAAVLNHAEVISLIKDEAS--NRIIGARIRNNLSGKEFDT-----YAKVVVNAAGPF-CDSVRKLADQN 306 (627)
Q Consensus 240 ~~a~~~Gv~i~~~t~V~~l~~~~~g--~~v~gV~~~d~~~g~~~~i-----~A~~VV~AtG~~-s~~l~~~~g~~ 306 (627)
..+...+++++.++.|++|+.++++ .+++||++.+ .+|...++ .++-||+|+|+. +.+|+...|+.
T Consensus 228 ~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~-~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIG 301 (587)
T PLN02785 228 AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD-ENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIG 301 (587)
T ss_pred hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE-CCCceEEEEeecccCceEEecccccCCHHHHHHcCCC
Confidence 3445578999999999999987531 1799999976 34543332 247899999974 56776666654
No 179
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.50 E-value=6.4e-06 Score=89.83 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CCCe-EEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 233 RLNVGLALTAALAGAAVLNHAEVISLIKDE--ASNR-IIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 233 ~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~--~g~~-v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
.+...+.+..++.|++|+.+++|++|..++ ++++ |++|++.+ .++ ...+.||.||+|+..+.
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g~~-~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-PEG-KKVIKADAYVAACDVPG 284 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-CCc-ceEEECCEEEECCChHH
Confidence 355668888888999999999999998864 3433 88887753 111 13588999999999874
No 180
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.50 E-value=8.5e-07 Score=98.60 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=33.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.+..+|+||||||+|+++|+.|+++|++|+|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999974
No 181
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.9e-06 Score=92.74 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=33.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCe-EEEEcCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLR-VGLVERED 104 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~-V~lvEk~~ 104 (627)
+..+||+|||||.+|+++|++|.++|.. ++|+||++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 4568999999999999999999999998 99999986
No 182
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.47 E-value=2.1e-06 Score=93.14 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
+|||+|||||++|+++|+.|+++|++|+|+|+..+++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG 38 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGG 38 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCc
Confidence 5999999999999999999999999999999965543
No 183
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.47 E-value=1.7e-06 Score=96.25 Aligned_cols=35 Identities=31% Similarity=0.653 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
.|||+|||||.+|+++|+.|+++|++|+|||++.+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~ 38 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 49999999999999999999999999999999764
No 184
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-06 Score=89.08 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHH
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l 299 (627)
...+...+.+.+...|+++.. ..|..+...++ ..-|.+ .++ +++||.||+|||.....+
T Consensus 60 g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~---~F~v~t---~~~---~~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 60 GPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG---PFKVKT---DKG---TYEAKAVIIATGAGARKL 118 (305)
T ss_pred hHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc---eEEEEE---CCC---eEEEeEEEECcCCcccCC
Confidence 456778888888889999876 77777766542 222333 122 499999999999987554
No 185
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.45 E-value=4.6e-06 Score=89.71 Aligned_cols=64 Identities=8% Similarity=0.107 Sum_probs=45.7
Q ss_pred echHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhh
Q 006891 229 MNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (627)
Q Consensus 229 ~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~ 303 (627)
++...+...|.+.+. +..++++++|+++..++++ + .|... +|. ++.||.||.|.|.+| .+++.+
T Consensus 102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~-~v~~~---~g~--~~~ad~vVgADG~~S-~vR~~l 165 (414)
T TIGR03219 102 VHRADFLDALLKHLP--EGIASFGKRATQIEEQAEE--V-QVLFT---DGT--EYRCDLLIGADGIKS-ALRDYV 165 (414)
T ss_pred CCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCc--E-EEEEc---CCC--EEEeeEEEECCCccH-HHHHHh
Confidence 556677777776553 3567889999999887644 2 34443 343 689999999999998 565544
No 186
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.43 E-value=4.9e-06 Score=90.81 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.+|||+|||||.+|+.+|+.|+++|++|+|||+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46999999999999999999999999999999975
No 187
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.43 E-value=3.3e-06 Score=94.04 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS 298 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~ 298 (627)
...++..|.+.+++.|++|++++.+++|+.++ | +|.||.+.+..+|+...|+||.||+|||+++..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g-~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED-G-ECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-C-EEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 35688889998999999999999999999864 7 999999866456777789999999999999854
No 188
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.43 E-value=3.7e-06 Score=92.88 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
..+...+.+.+++.|++++.+++|+++..+++. +.|.+ .+|. ++.++.||+|||...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~---~~V~~---~~g~--~i~a~~vViAtG~~~ 322 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAAGL---IEVEL---ANGA--VLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe---EEEEE---CCCC--EEEcCEEEECCCCCc
Confidence 456677778888899999999999999886532 23444 2343 689999999999854
No 189
>PRK06370 mercuric reductase; Validated
Probab=98.43 E-value=3.7e-06 Score=91.72 Aligned_cols=41 Identities=34% Similarity=0.513 Sum_probs=36.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~ 109 (627)
+.+|||+|||||++|+++|+.|+++|++|+|||+..+++++
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c 43 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTC 43 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCce
Confidence 44699999999999999999999999999999998765544
No 190
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.41 E-value=1e-05 Score=79.69 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 233 ~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
++-..|....++.|+.+..+-+|.+....+ | +|+.|.+++ ...+.++|+..|+|+|.+-.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~-~v~~i~trn---~~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-G-RVTEIYTRN---HADIPLRADFYVLASGSFFS 318 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC-C-eEEEEEecc---cccCCCChhHeeeecccccc
Confidence 556677788899999999999999998877 5 899988864 44578999999999998753
No 191
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.39 E-value=5.3e-06 Score=90.42 Aligned_cols=34 Identities=38% Similarity=0.695 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
+|||+|||||.+|+.+|+.|+++|++|+|||+.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5999999999999999999999999999999753
No 192
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.38 E-value=9.9e-06 Score=89.48 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=48.7
Q ss_pred HHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCC-cEEEEEcCeEEeccCCC-hHHHhhhhcCC
Q 006891 237 GLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSG-KEFDTYAKVVVNAAGPF-CDSVRKLADQN 306 (627)
Q Consensus 237 ~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g-~~~~i~A~~VV~AtG~~-s~~l~~~~g~~ 306 (627)
+++..|.+. +.+|++++.|+.|+.++ + +++||.+.....+ ....+.++.||+|+|.+ +..|+...|+.
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~~~-~-r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig 277 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILLEG-D-RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG 277 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEEEC-C-eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence 444445555 59999999999999987 4 8899988752222 24556779999999976 56666665543
No 193
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.38 E-value=7.7e-06 Score=89.44 Aligned_cols=38 Identities=34% Similarity=0.651 Sum_probs=34.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
..|||+|||||.+|+++|+.|+++|++|+|||+..+++
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG 40 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGG 40 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCc
Confidence 46999999999999999999999999999999976543
No 194
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=1e-06 Score=92.55 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=46.0
Q ss_pred ceechHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH
Q 006891 227 GQMNDSRLNVGLALTAALA-GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 227 g~~~~~~l~~~l~~~a~~~-Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
++.|-..+-..+.+..+.. +..++ ...|.+|+.+++. +|+||++. +|. .+.|+.||++||-|..
T Consensus 95 aQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~-~v~GV~t~---~G~--~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 95 AQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQ-RVVGVVTA---DGP--EFHAKAVVLTTGTFLR 159 (621)
T ss_pred hhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCC-eEEEEEeC---CCC--eeecCEEEEeeccccc
Confidence 4556566666666665543 67764 5688899886644 69999885 354 8999999999997753
No 195
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.36 E-value=1.2e-05 Score=80.71 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccC--CChHHH
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG--PFCDSV 299 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG--~~s~~l 299 (627)
+.++...+.+..++.|..|+++|+|+....+++| .|. |++.+..+++..+++||.+.+|.| +|...|
T Consensus 251 D~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg-~v~-i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GL 319 (506)
T KOG1335|consen 251 DGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDG-PVE-IEVENAKTGKKETLECDVLLVSIGRRPFTEGL 319 (506)
T ss_pred CHHHHHHHHHHHHhcCceeEeccEEEEeeccCCC-ceE-EEEEecCCCceeEEEeeEEEEEccCcccccCC
Confidence 3566777777788899999999999999999887 554 788887888888999999999999 555443
No 196
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.36 E-value=5.5e-07 Score=69.68 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=29.7
Q ss_pred EECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 006891 76 VIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (627)
Q Consensus 76 IIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~ 109 (627)
|||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 8999999999999999999999999999754443
No 197
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.31 E-value=9.6e-06 Score=88.52 Aligned_cols=37 Identities=41% Similarity=0.666 Sum_probs=34.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
.+|||+|||||.+|+++|+.|+++|++|+|+|+..++
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~G 39 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLG 39 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc
Confidence 4599999999999999999999999999999998743
No 198
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.30 E-value=2e-06 Score=82.50 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-+|+|||+||+|+++|+.|.+.|++|+|+||+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 379999999999999999999999999999985
No 199
>PTZ00058 glutathione reductase; Provisional
Probab=98.29 E-value=9e-06 Score=89.84 Aligned_cols=39 Identities=36% Similarity=0.557 Sum_probs=35.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
..+|||+|||||.+|.++|+.|++.|++|+|||++.+|+
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GG 84 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGG 84 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 456999999999999999999999999999999975443
No 200
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.28 E-value=1.4e-05 Score=88.34 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 233 RLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 233 ~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
.+...+.+.+++.|++++.+++|+++..++++ ..|.+ .+|. .+.+|.||+|||...
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~---~~v~~---~~g~--~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETEDGL---IVVTL---ESGE--VLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe---EEEEE---CCCC--EEEeCEEEECCCCCc
Confidence 45566677777889999999999999876532 22443 2343 689999999999864
No 201
>PLN02507 glutathione reductase
Probab=98.28 E-value=2.1e-05 Score=86.32 Aligned_cols=34 Identities=35% Similarity=0.538 Sum_probs=32.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
..+|||+|||||.+|..+|..|++.|++|+|||+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999999999999999999999999997
No 202
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.28 E-value=5.9e-06 Score=85.59 Aligned_cols=40 Identities=25% Similarity=0.539 Sum_probs=36.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
...+||||||+|.+||++|++|.+.|++|+|+|.++-.+|
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 4568999999999999999999999999999999875444
No 203
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.26 E-value=2.7e-05 Score=80.42 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=58.0
Q ss_pred cCceechHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhh
Q 006891 225 YDGQMNDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (627)
Q Consensus 225 ~~g~~~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~ 303 (627)
.-|+-.-..++..+.+..++.|++|+++|+|.+|+..+ + .+.+|.+++ | .+|.++.||+|.|.-+.++..++
T Consensus 166 HiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~-~~~~v~~~~---g--~~i~~~~vvlA~Grsg~dw~~~l 237 (486)
T COG2509 166 HIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIED-N-EVLGVKLTK---G--EEIEADYVVLAPGRSGRDWFEML 237 (486)
T ss_pred ccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-C-ceEEEEccC---C--cEEecCEEEEccCcchHHHHHHH
Confidence 34555567888999999999999999999999999977 4 577777642 4 48999999999998777766554
No 204
>PRK10262 thioredoxin reductase; Provisional
Probab=98.25 E-value=1.4e-05 Score=82.71 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=34.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
++.+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~ 40 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK 40 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence 5679999999999999999999999999999997654
No 205
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.22 E-value=8.2e-06 Score=89.54 Aligned_cols=65 Identities=25% Similarity=0.166 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHcCC--EEEcCcEEEEEEEcCCCC--eEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 230 NDSRLNVGLALTAALAGA--AVLNHAEVISLIKDEASN--RIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~~Gv--~i~~~t~V~~l~~~~~g~--~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
....+...+...|+..+. .|+++|+|+++.+.++.. .-+-|+++ .+|+..+-..|.||+|+|.++
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSS
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcC
Confidence 345677788888888776 689999999998865320 12334442 345544556799999999887
No 206
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=2.9e-05 Score=84.98 Aligned_cols=33 Identities=39% Similarity=0.654 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
.+|||+|||||.+|+++|..|++.|++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 369999999999999999999999999999998
No 207
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=1.6e-05 Score=84.65 Aligned_cols=62 Identities=13% Similarity=0.010 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCC--EEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 232 SRLNVGLALTAALAGA--AVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv--~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
..+...|...|+..+. .|.++++|..+...++| -|.|...+..++ ..+.-+|.||+|||.+.
T Consensus 90 ~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g--kW~V~~~~~~~~-~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 90 REVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG--KWRVTTKDNGTQ-IEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHHHhcChhhheEecccEEEEeeccCC--ceeEEEecCCcc-eeEEEeeEEEEcccCcC
Confidence 3667777778887774 68889999999887633 244555542221 34677899999999995
No 208
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.17 E-value=6.4e-06 Score=84.09 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-+|+||||||+|+++|..|++.|++|+|+|+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 589999999999999999999999999999963
No 209
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.12 E-value=0.0014 Score=76.08 Aligned_cols=55 Identities=5% Similarity=0.132 Sum_probs=46.2
Q ss_pred CCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcC
Q 006891 533 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 593 (627)
Q Consensus 533 ~~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~ 593 (627)
...+|.|+.|++++|+.||+. ..+..+-|+++|++|.+ | | .|.+.|.+++..+++
T Consensus 421 ~a~iC~C~~Vt~~~i~~ai~~--g~~~~~~v~~~t~agt~-C--g-~C~~~v~~~l~~~~~ 475 (847)
T PRK14989 421 SAQICSCFDVTKGDLIAAINK--GCHTVAALKAETKAGTG-C--G-GCIPLVTQVLNAELA 475 (847)
T ss_pred CCEEEEeecccHHHHHHHHHh--CCCCHHHHHhhCcCCCC-C--c-CHHHHHHHHHHHHHH
Confidence 457889999999999999986 45556669999999995 6 2 499999999998776
No 210
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.11 E-value=4.4e-05 Score=85.72 Aligned_cols=35 Identities=31% Similarity=0.552 Sum_probs=32.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
+.+|||+|||+|.+|..+|..|+++|++|+|||++
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34799999999999999999999999999999975
No 211
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.10 E-value=0.00015 Score=77.68 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccC--CChHHH
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAG--PFCDSV 299 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG--~~s~~l 299 (627)
+..+...+.+..++.|++++++++|+.+..+++ . ..+.+++ |+...+.+|.|++|+| +..+.|
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~-v~v~~~~---g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDD--G-VLVTLED---GEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEecCC--e-EEEEEec---CCCCEEEeeEEEEccCCccCCCCC
Confidence 466777888888888899999999999988764 3 3455543 4333789999999999 455544
No 212
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.09 E-value=6.6e-05 Score=68.83 Aligned_cols=34 Identities=26% Similarity=0.532 Sum_probs=29.6
Q ss_pred EEECCChHHHHHHHHHHHC-----CCeEEEEcCCCCCCC
Q 006891 75 LVIGGGATGCGVALDAATR-----GLRVGLVEREDFSSG 108 (627)
Q Consensus 75 vIIGgGi~G~~~A~~La~~-----G~~V~lvEk~~~~~g 108 (627)
+|||+|++|++++.+|.++ ..+|+|+|+..++.|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G 39 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAG 39 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcccc
Confidence 5999999999999999988 569999999876534
No 213
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.08 E-value=7.2e-05 Score=81.81 Aligned_cols=33 Identities=39% Similarity=0.606 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
+|||||||+|.+|..+|+.|++.|++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 499999999999999999999999999999985
No 214
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.05 E-value=9e-05 Score=80.92 Aligned_cols=34 Identities=32% Similarity=0.566 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCeEEEEcCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATR-GLRVGLVERE 103 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~-G~~V~lvEk~ 103 (627)
.+|||+|||||.+|..+|..|++. |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 359999999999999999999997 9999999984
No 215
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.02 E-value=0.00019 Score=82.92 Aligned_cols=32 Identities=38% Similarity=0.466 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~ 104 (627)
+|+|||||++|+++|+.|+++ |++|+|+||..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 699999999999999999998 89999999986
No 216
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.02 E-value=0.00013 Score=79.71 Aligned_cols=34 Identities=41% Similarity=0.676 Sum_probs=32.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
||+|||+|.+|+.+|..|+++|.+|+|||++.++
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~g 36 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGLG 36 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence 8999999999999999999999999999998753
No 217
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.01 E-value=7.8e-05 Score=84.81 Aligned_cols=59 Identities=24% Similarity=0.201 Sum_probs=44.7
Q ss_pred HHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec------C---------CCcEEEEEcCeEEeccCCChH
Q 006891 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN------L---------SGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 238 l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~------~---------~g~~~~i~A~~VV~AtG~~s~ 297 (627)
..+.+++.|+++++++.++++..+++| ++++|++... . +|+...+.+|.||+|.|--.+
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~g-~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQG-HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCCC-eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 345678899999999999999876657 8988886421 1 234457999999999996543
No 218
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.99 E-value=0.0001 Score=79.76 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=46.1
Q ss_pred cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEc-CeEEeccCCC-hHHHhhhhcCC
Q 006891 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYA-KVVVNAAGPF-CDSVRKLADQN 306 (627)
Q Consensus 245 ~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A-~~VV~AtG~~-s~~l~~~~g~~ 306 (627)
.+..+..++.|+.+..|..|.+..||+... ..|+..+++| |=||+++|+. |.+|+-..|+.
T Consensus 267 ~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIG 329 (623)
T KOG1238|consen 267 PNLHISRNAAVTRVLIDPAGKRAKGVEFVR-DGGKEHTVKARKEVILSAGAINSPQLLMLSGIG 329 (623)
T ss_pred ccccccccceEEEEEEcCCCceEEEEEEEe-cCceeeeecccceEEEeccccCCHHHHHHcCCC
Confidence 367788899999999986665788998874 2256667777 5599999975 67777666654
No 219
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.95 E-value=0.0021 Score=74.66 Aligned_cols=58 Identities=9% Similarity=0.181 Sum_probs=47.2
Q ss_pred CCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCC
Q 006891 533 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWD 595 (627)
Q Consensus 533 ~~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~w~ 595 (627)
...+|.|+.|++.+|+.||+.--+.+ .+-|+++|+++. .| ..|.+.|.++|..+++-.
T Consensus 409 ~~~vC~C~~Vt~~~i~~ai~~~~~~~-~~~v~~~t~ag~-~C---g~C~~~~~~il~~~~~~~ 466 (785)
T TIGR02374 409 SEQICSCNTVTKGAIIDAIHTGSCTT-VEELKACTKAGT-SC---GGCKPLVEQLLRAELNSQ 466 (785)
T ss_pred CCEEeeCCCCcHHHHHHHHHhCCCCC-HHHHHHhCCCCC-CC---cCHHHHHHHHHHHHHhhc
Confidence 56788999999999999999632444 555899999996 57 359999999999887633
No 220
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=9.3e-06 Score=87.98 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=35.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
....+|+|||||++|++||++|.+.|.+|+|+|+.|..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 456899999999999999999999999999999987443
No 221
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.95 E-value=9.4e-06 Score=88.00 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
+|||+|||||.+|+++|+.|+++|++|+|||+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 5999999999999999999999999999999975
No 222
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.93 E-value=9.8e-06 Score=87.92 Aligned_cols=37 Identities=41% Similarity=0.568 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
+|||+|||||.+|+.+|+.|+++|++|+|||+..+++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG 38 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGG 38 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccccc
Confidence 5999999999999999999999999999999976544
No 223
>PRK09897 hypothetical protein; Provisional
Probab=97.92 E-value=0.00025 Score=77.69 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=32.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CeEEEEcCCC-CCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRG--LRVGLVERED-FSSGT 109 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G--~~V~lvEk~~-~~~g~ 109 (627)
.+|+|||||.+|+++|..|++.+ ++|+|+|++. ++.|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 48999999999999999999864 5899999964 55543
No 224
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.91 E-value=9.3e-05 Score=76.85 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=26.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-CeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRG-LRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G-~~V~lvEk~~ 104 (627)
.||+|+||.|+.+++.|..|.+.+ .+++.+|+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 389999999999999999999886 9999999976
No 225
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.0001 Score=76.06 Aligned_cols=35 Identities=40% Similarity=0.693 Sum_probs=32.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
+..|||||||||-+|+-+|.++|+-|.+++|+-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 56799999999999999999999999999999887
No 226
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.83 E-value=0.00014 Score=72.49 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
...+|.|||+||+|+++||.|+++ .+|+|+|+++-.+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlG 43 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLG 43 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecccccc
Confidence 346899999999999999999976 6999999986433
No 227
>PRK06116 glutathione reductase; Validated
Probab=97.81 E-value=2e-05 Score=85.76 Aligned_cols=38 Identities=37% Similarity=0.614 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
.+|||+|||||.+|+++|+.|+++|++|+|||+..+++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG 40 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG 40 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence 35999999999999999999999999999999975543
No 228
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.79 E-value=2.6e-05 Score=81.62 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=33.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
+||+|||||++|+++|+.|++.|.+|+|||+++..+|
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 7999999999999999999999999999999864444
No 229
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.79 E-value=2.5e-05 Score=85.31 Aligned_cols=39 Identities=31% Similarity=0.533 Sum_probs=35.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGT 109 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~ 109 (627)
+|||+|||||.+|+++|+.|+++|++|+|||++.+++.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c 42 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVC 42 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCce
Confidence 599999999999999999999999999999998665544
No 230
>PLN02576 protoporphyrinogen oxidase
Probab=97.79 E-value=2.6e-05 Score=86.01 Aligned_cols=39 Identities=28% Similarity=0.517 Sum_probs=34.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-CCeEEEEcCCC-CCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR-GLRVGLVERED-FSS 107 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~-G~~V~lvEk~~-~~~ 107 (627)
..++||+|||||++|+++|++|+++ |++|+|+|+++ +|+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 3457999999999999999999999 99999999986 444
No 231
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.78 E-value=2.7e-05 Score=84.31 Aligned_cols=34 Identities=38% Similarity=0.564 Sum_probs=32.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
+|||+|||||.+|+++|..|+++|++|+||||++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 5999999999999999999999999999999985
No 232
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.77 E-value=2.8e-05 Score=84.87 Aligned_cols=37 Identities=35% Similarity=0.575 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
.+|||||||||.+|+++|..|++.|++|+|||++.++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~G 38 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLG 38 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 4599999999999999999999999999999995443
No 233
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.76 E-value=2.7e-05 Score=84.97 Aligned_cols=37 Identities=46% Similarity=0.732 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
.|||+|||||++|+.+|+.|+++|++|+|||+..+++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG 37 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGG 37 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 3899999999999999999999999999999955544
No 234
>PRK14694 putative mercuric reductase; Provisional
Probab=97.75 E-value=3.3e-05 Score=84.40 Aligned_cols=39 Identities=44% Similarity=0.659 Sum_probs=35.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
...|||+|||||.+|+++|..|++.|++|+|||++.+++
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GG 42 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGG 42 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccccc
Confidence 567999999999999999999999999999999986544
No 235
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.74 E-value=0.00048 Score=78.07 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
..+|+|||+|.+|+++|+.|++.|++|+|+|+.+..+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 4789999999999999999999999999999987443
No 236
>PLN02268 probable polyamine oxidase
Probab=97.74 E-value=3.2e-05 Score=83.76 Aligned_cols=36 Identities=33% Similarity=0.561 Sum_probs=32.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
+|+|||||++|+++|+.|.++|++|+|+|+++-.+|
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 799999999999999999999999999999874443
No 237
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=2.9e-05 Score=82.05 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=33.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
.|+|+|||++|++||++|+++|++|+|+|+++..+|
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 599999999999999999999999999999986554
No 238
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.72 E-value=3.4e-05 Score=84.22 Aligned_cols=37 Identities=35% Similarity=0.589 Sum_probs=34.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
|||+|||||.+|+++|..|+++|++|+|||++.+++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence 7999999999999999999999999999999876553
No 239
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.69 E-value=4e-05 Score=79.30 Aligned_cols=38 Identities=45% Similarity=0.672 Sum_probs=34.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
.-+++|||||++|+.+|++|++.|++|.||||++.-+|
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 45899999999999999999999999999999975443
No 240
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.68 E-value=0.004 Score=65.30 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhh
Q 006891 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLA 303 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~ 303 (627)
.+.++.....+..+++||++++++.|+++..+ + |++. +|+. +|.++.||-|+|.-+..+.+.+
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~--~-----v~~~---~g~~-~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD--G-----VTLK---DGEE-EIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC--c-----EEEc---cCCe-eEecCEEEEcCCCcCChhhhhc
Confidence 35677777777889999999999999998763 3 5553 3432 6999999999999998888764
No 241
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.67 E-value=4.2e-05 Score=83.23 Aligned_cols=36 Identities=33% Similarity=0.575 Sum_probs=32.1
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEcCCCCCCC
Q 006891 73 DILVIGGGATGCGVALDAATRG--LRVGLVEREDFSSG 108 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G--~~V~lvEk~~~~~g 108 (627)
+|+|||||++|+++|+.|+++| ++|+|+|+.+-.+|
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 6999999999999999999988 89999999864333
No 242
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.66 E-value=0.0003 Score=76.41 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEcCCCC
Q 006891 73 DILVIGGGATGCGVALDAATRG--LRVGLVEREDF 105 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G--~~V~lvEk~~~ 105 (627)
+|||||||.+|+++|..|++.+ .+|+|||+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 5999999999999999999875 58999999863
No 243
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.65 E-value=4.9e-05 Score=83.05 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=32.9
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCeEEEEcCCCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATR----GLRVGLVEREDFSS 107 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~----G~~V~lvEk~~~~~ 107 (627)
.||+|||||++|+++|+.|+++ |++|+|+|+++-.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 6899999999999999999999 99999999986433
No 244
>PRK13748 putative mercuric reductase; Provisional
Probab=97.62 E-value=5.7e-05 Score=84.60 Aligned_cols=38 Identities=39% Similarity=0.668 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
.+|||+|||||.+|+++|..|++.|++|+|||++.+++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG 134 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGG 134 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCccee
Confidence 46999999999999999999999999999999985543
No 245
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=8.5e-05 Score=73.24 Aligned_cols=36 Identities=36% Similarity=0.570 Sum_probs=33.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC-CCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED-FSS 107 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~-~~~ 107 (627)
+|++|||+|++|+.+|..|++.|.+|+||||.+ +|+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 899999999999999999999999999999986 444
No 246
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.58 E-value=0.00026 Score=79.21 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
..+|+|||+|.+|+++|+.|++.|++|+|+|+.+..+|
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG 174 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 45899999999999999999999999999999874443
No 247
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.56 E-value=8.2e-05 Score=78.14 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.||+|||||++|+.+|+.|+++|++|+|+|+.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 499999999999999999999999999999875
No 248
>PLN02546 glutathione reductase
Probab=97.51 E-value=0.0001 Score=81.54 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
..+|||+|||+|.+|..+|+.|+++|++|+|||+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999999999999999999999999996
No 249
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.48 E-value=0.0008 Score=72.83 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~ 104 (627)
.|||||||.+|+.+|..|.++ +.+|+|||+++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 699999999999999999887 67999999985
No 250
>PLN02568 polyamine oxidase
Probab=97.48 E-value=0.00014 Score=80.17 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=34.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC-----CeEEEEcCCCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRG-----LRVGLVEREDFSSG 108 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G-----~~V~lvEk~~~~~g 108 (627)
++..||+|||||++|+++|+.|++.| ++|+|+|+++..+|
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 34579999999999999999999888 89999999874443
No 251
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.47 E-value=0.00012 Score=77.73 Aligned_cols=35 Identities=34% Similarity=0.549 Sum_probs=31.8
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEcCCCCCC
Q 006891 73 DILVIGGGATGCGVALDAATRG--LRVGLVEREDFSS 107 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G--~~V~lvEk~~~~~ 107 (627)
.|+|||||++|+++||.|++++ ..|+|+|+++..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 4899999999999999999999 9999999986433
No 252
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.43 E-value=0.00013 Score=79.69 Aligned_cols=35 Identities=34% Similarity=0.568 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHC------CCeEEEEcCCCCCC
Q 006891 73 DILVIGGGATGCGVALDAATR------GLRVGLVEREDFSS 107 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~------G~~V~lvEk~~~~~ 107 (627)
+|+|||||++|+++|+.|++. |.+|+|+|+.+-.+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 699999999999999999986 48999999987433
No 253
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.43 E-value=0.0013 Score=65.63 Aligned_cols=46 Identities=35% Similarity=0.471 Sum_probs=37.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTK 115 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~~~~~ 115 (627)
..+||.+|||||..|+++|+.++..|.+|.|+|..- +-|.+..|-|
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f-~lGGTCVn~G 63 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF-GLGGTCVNVG 63 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC-CcCceEEeec
Confidence 457999999999999999999999999999999862 3333444433
No 254
>PLN02676 polyamine oxidase
Probab=97.39 E-value=0.00021 Score=78.13 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSSG 108 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~~~g 108 (627)
..+||+|||||++|+++|+.|+++|. +|+|+|+++..+|
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 35899999999999999999999998 5999999874444
No 255
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.39 E-value=0.00017 Score=76.36 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=31.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.||+|||||.+|+.+|+.|+++|++|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 389999999999999999999999999999875
No 256
>PRK14727 putative mercuric reductase; Provisional
Probab=97.37 E-value=0.00018 Score=78.78 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=33.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
+.+|||+|||+|.+|+++|+.|++.|.+|+|||+++
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 456999999999999999999999999999999974
No 257
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.34 E-value=0.00019 Score=78.85 Aligned_cols=33 Identities=39% Similarity=0.643 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|||+|||||.+|+.+|..|+++|++|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 599999999999999999999999999999974
No 258
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.34 E-value=0.00025 Score=82.56 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=34.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
...+|+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 347999999999999999999999999999999864433
No 259
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.33 E-value=0.00026 Score=67.70 Aligned_cols=32 Identities=38% Similarity=0.740 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
||||||||.+|+++|.+|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998764
No 260
>PRK12831 putative oxidoreductase; Provisional
Probab=97.31 E-value=0.00031 Score=76.45 Aligned_cols=38 Identities=29% Similarity=0.321 Sum_probs=34.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
....||+|||||++|+++|+.|+++|++|+|+|+.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 34579999999999999999999999999999997643
No 261
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.29 E-value=0.0026 Score=67.32 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC--CCeEEEEEEEecCCCcEEEE--Ec-CeEEeccCCChHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEA--SNRIIGARIRNNLSGKEFDT--YA-KVVVNAAGPFCDS 298 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~--g~~v~gV~~~d~~~g~~~~i--~A-~~VV~AtG~~s~~ 298 (627)
..++.-+.+..+++||+|.++|+|++|..+.+ ...++++.+. .+|+...| .. |.|++..|.-...
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t~~ 276 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMTEG 276 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCccccc
Confidence 45778889999999999999999999987532 2145566554 34444444 34 8899999976543
No 262
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.28 E-value=0.0032 Score=68.96 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|++.|.+|+|||+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 589999999999999999999999999999864
No 263
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.26 E-value=0.00034 Score=79.61 Aligned_cols=39 Identities=26% Similarity=0.482 Sum_probs=34.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
...+|+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 347999999999999999999999999999999864433
No 264
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.24 E-value=0.0043 Score=67.75 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.-.|+|||||.+|+-.|..+++.|.+|+|+|+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3579999999999999999999999999999854
No 265
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.22 E-value=0.0037 Score=68.29 Aligned_cols=34 Identities=35% Similarity=0.542 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.-+|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 3589999999999999999999999999999864
No 266
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.21 E-value=0.0049 Score=65.37 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=41.8
Q ss_pred HHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChH-HHhhhhcCC
Q 006891 239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCD-SVRKLADQN 306 (627)
Q Consensus 239 ~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~-~l~~~~g~~ 306 (627)
.+.+++.|++++++++|+++..+++ . ..|.+. +|+ ++.+|.||+|+|...+ .+.+..|+.
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~~--~-~~v~~~---~g~--~i~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTDS--G-IRATLD---SGR--SIEVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccCC--E-EEEEEc---CCc--EEECCEEEECcCCCcchHHHHHCCCC
Confidence 3445678999999999999987653 2 234442 343 7999999999998764 455555543
No 267
>PLN02529 lysine-specific histone demethylase 1
Probab=97.21 E-value=0.00042 Score=78.43 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
...||+|||||++|+++|+.|+++|++|+|+|+.+-
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 347999999999999999999999999999999863
No 268
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.17 E-value=0.0013 Score=69.41 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHHC---CCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATR---GLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~---G~~V~lvEk~~ 104 (627)
.|||||||.+|+.+|..|.++ +.+|+|||+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence 489999999999999999643 78999999875
No 269
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.16 E-value=0.006 Score=66.66 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..+++.|.+|+|+|+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 479999999999999999999999999998753
No 270
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.15 E-value=0.00071 Score=54.19 Aligned_cols=31 Identities=45% Similarity=0.661 Sum_probs=30.1
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
|+|||||.+|+-+|..|++.|.+|+||++.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 8999999999999999999999999999986
No 271
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.15 E-value=0.0044 Score=67.25 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 379999999999999999999999999998753
No 272
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.11 E-value=0.0053 Score=67.01 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|++.|.+|+|+|+.+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 479999999999999999999999999999864
No 273
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.10 E-value=0.00066 Score=73.64 Aligned_cols=38 Identities=29% Similarity=0.349 Sum_probs=34.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
...++|+|||||.+|+++|+.|+++|++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34589999999999999999999999999999997643
No 274
>PRK12831 putative oxidoreductase; Provisional
Probab=97.09 E-value=0.0058 Score=66.53 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|.+.|.+|+|+++.+
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999998643
No 275
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.08 E-value=0.00062 Score=79.89 Aligned_cols=36 Identities=28% Similarity=0.226 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
...+|+|||||++|+++|+.|+++|++|+|+|+.+-
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 347899999999999999999999999999999864
No 276
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.07 E-value=0.007 Score=66.11 Aligned_cols=33 Identities=39% Similarity=0.578 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-+|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 589999999999999999999999999999864
No 277
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0016 Score=64.98 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC-CCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEA-SNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~-g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l 299 (627)
.++..++.+..+++.+++.+-.++++|..... | ...-|++. +| ..++++.||++||+.-.++
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~-~l~ev~l~---nG--avLkaktvIlstGArWRn~ 328 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEG-GLIEVELA---NG--AVLKARTVILATGARWRNM 328 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCC-ccEEEEec---CC--ceeccceEEEecCcchhcC
Confidence 45677888888888899988888999887421 2 34456663 45 4789999999999855444
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.05 E-value=0.00066 Score=73.98 Aligned_cols=35 Identities=37% Similarity=0.678 Sum_probs=32.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
+|+|||||.+|+++|..|++.|++|+|||++.+++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG 36 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGG 36 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 69999999999999999999999999999987654
No 279
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.04 E-value=0.0076 Score=65.67 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-+|+|||||.+|+-+|..+++.|.+|+|+|+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 479999999999999999999999999999864
No 280
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.04 E-value=0.0052 Score=63.86 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=32.9
Q ss_pred CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCC
Q 006891 246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGP 294 (627)
Q Consensus 246 Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~ 294 (627)
-++++.+++|+++..+++| ++ -+.+++..+++...+.+|.||+|||-
T Consensus 293 ~~~l~~~~~v~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDG-GV-RLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-S-SE-EEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCC-EE-EEEEEECCCCCeEEEecCEEEEcCCc
Confidence 4899999999999998754 33 36677766777789999999999994
No 281
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.03 E-value=0.01 Score=63.31 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|++.|.+|+|||+.+
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 479999999999999999999999999999864
No 282
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.03 E-value=0.00083 Score=73.40 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=46.4
Q ss_pred HHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec---------CCCcEEEEEcCeEEeccCCChH--HHhhhhc
Q 006891 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN---------LSGKEFDTYAKVVVNAAGPFCD--SVRKLAD 304 (627)
Q Consensus 238 l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~---------~~g~~~~i~A~~VV~AtG~~s~--~l~~~~g 304 (627)
..+.+++.|+++++++.+++|..++ | +|++|++... .+++...+.+|.||+|+|.-.+ .+.+.++
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~-g-~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~g 410 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN-G-KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFG 410 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC-C-EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccC
Confidence 3456778999999999999997544 6 8988876421 1244568999999999996543 3544433
No 283
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.03 E-value=0.00078 Score=78.21 Aligned_cols=37 Identities=32% Similarity=0.419 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
..+|+|||||.+|+++|+.|+++|++|+|+|+.+..+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 4689999999999999999999999999999986443
No 284
>PRK07846 mycothione reductase; Reviewed
Probab=96.99 E-value=0.00072 Score=73.43 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
+|||+|||||.+|..+|.. +.|++|+|||++.+++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GG 35 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGG 35 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCC
Confidence 3899999999999988866 3599999999976654
No 285
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.99 E-value=0.0048 Score=65.39 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~ 104 (627)
.+|||||||.+|+.+|..|.+. ..+|+||++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4899999999999999999875 45899999865
No 286
>PRK06370 mercuric reductase; Validated
Probab=96.98 E-value=0.0094 Score=65.07 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 589999999999999999999999999999864
No 287
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.98 E-value=0.01 Score=64.91 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||+|.+|+-+|..|++.|.+|+|+|+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 489999999999999999999999999999864
No 288
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.98 E-value=0.0011 Score=72.03 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=33.1
Q ss_pred CCcEEEECCChHHHHHHHHHHH--CCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAAT--RGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~--~G~~V~lvEk~~~~~ 107 (627)
..+|+|||||++|+.+|+.|++ .|++|+|+|+.+..+
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4689999999999999999997 799999999987544
No 289
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.97 E-value=0.0011 Score=72.31 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
...+|+|||||.+|+++|+.|+++|++|+|+|+.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 3479999999999999999999999999999998643
No 290
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.96 E-value=0.00099 Score=77.16 Aligned_cols=36 Identities=36% Similarity=0.426 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
...+|+|||||.+|+++|+.|+++|++|+|+|+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457999999999999999999999999999999753
No 291
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.95 E-value=0.00095 Score=79.05 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=43.9
Q ss_pred HHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEec--------------CCCcEEEEEcCeEEeccCCChH
Q 006891 240 LTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 240 ~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~--------------~~g~~~~i~A~~VV~AtG~~s~ 297 (627)
+.+++.|++|++++.++++..+++| +|++|++... .+|+...+.+|.||+|.|--.+
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G-~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEG-SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCC-eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCC
Confidence 4577899999999999999876667 8999877521 1234457999999999996544
No 292
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0031 Score=59.05 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHH
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSV 299 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l 299 (627)
..++..+.+.+.+.|.+|+.. .|.++.....- .-+.. +...+.|+.||+|||+-+..|
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskp---F~l~t------d~~~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIITE-TVSKVDLSSKP---FKLWT------DARPVTADAVILATGASAKRL 127 (322)
T ss_pred HHHHHHHHHHHHhhcceeeee-ehhhccccCCC---eEEEe------cCCceeeeeEEEecccceeee
Confidence 567888999999999999764 58888776532 21221 124799999999999988665
No 293
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=96.91 E-value=0.00059 Score=41.32 Aligned_cols=18 Identities=39% Similarity=0.372 Sum_probs=15.0
Q ss_pred CchhhhhHHHHHHHHHhh
Q 006891 1 MSATRIRRFGAVLAAAAG 18 (627)
Q Consensus 1 msrR~f~~~~a~~ga~aa 18 (627)
||||+|||++++++++++
T Consensus 2 ~sRR~fLk~~~a~~a~~~ 19 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAAA 19 (26)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 799999999988777654
No 294
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.87 E-value=0.011 Score=65.46 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=39.8
Q ss_pred cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 245 ~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
.|+++++++.++++..++ + ++.+|.+.+..+++...+.+|.||+|+|.-.
T Consensus 401 ~gV~i~~~~~v~~i~~~~-~-~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDG-D-KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CCCEEEECCeeEEEEcCC-C-EEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 589999999999997654 5 7888888764445556899999999999654
No 295
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.87 E-value=0.011 Score=64.45 Aligned_cols=34 Identities=32% Similarity=0.634 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.-.|+|||||.+|+-+|..+++.|.+|+|+|+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3579999999999999999999999999999864
No 296
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.011 Score=62.22 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHC--C-CeEEEEcCCC-CCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATR--G-LRVGLVERED-FSSGT 109 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~--G-~~V~lvEk~~-~~~g~ 109 (627)
++|+|||||.+|+++|.+|.+. . .+|.|+|+.. ++.|.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 6899999999999999999986 2 2399999974 55543
No 297
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.83 E-value=0.0011 Score=72.03 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=29.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
+|||+|||+|.+|..+|.. +.|+||+|||++.+++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GG 36 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGG 36 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCC
Confidence 5999999999999888644 4699999999976643
No 298
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0017 Score=64.43 Aligned_cols=44 Identities=36% Similarity=0.481 Sum_probs=37.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC-CCCCCCcCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVERE-DFSSGTSSR 112 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~-~~~~g~S~~ 112 (627)
..+||.+|||||..|++||-+++..|.+|.++|-- +-..|+|..
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWG 61 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWG 61 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccc
Confidence 56799999999999999999999999999999975 334555543
No 299
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.81 E-value=0.0013 Score=67.62 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeE--EEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRV--GLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V--~lvEk~~~ 105 (627)
..+|+||||||+|+++||+|++++-+| +|+|+.+-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R 47 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR 47 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence 468999999999999999999998765 55999863
No 300
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.80 E-value=0.005 Score=71.47 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=44.5
Q ss_pred CCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccC-ChHHHhhhHHHHHHHHHHHcC
Q 006891 533 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFL-DTDAAGRALPRIIEIMATEHK 593 (627)
Q Consensus 533 ~~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~-~~~~~~~~~~~v~~~~~~~l~ 593 (627)
...+|+|.++++.|+...|+.+--.+..++ ..+...+.- .| .-|.|.|.-+|+-.++
T Consensus 471 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gc---~~c~~~~~~~~~~~~~ 528 (785)
T TIGR02374 471 TPALCECTDFSRDELFEEIQARGFTTFAEV-MNQLGWKTKNGC---STCKPAVQYYLAMLYP 528 (785)
T ss_pred cCcccCCcCCCHHHHHHHHHHcCCCCHHHH-HHHhCCCCCCCC---cccHHhHHHHHHhcCC
Confidence 368999999999999999999888888885 444444421 34 4799999999987743
No 301
>PF04324 Fer2_BFD: BFD-like [2Fe-2S] binding domain; InterPro: IPR007419 The two Fe ions are each coordinated by two conserved cysteine residues. This domain occurs alone in small proteins such as bacterioferritin-associated ferredoxin (BFD, P13655 from SWISSPROT). The function of BFD is not known, but it may be a general redox and/or regulatory component involved in the iron storage or mobilisation functions of bacterioferritin in bacteria []. This domain is also found in nitrate reductase proteins in association with the nitrite and sulphite reductase 4Fe-4S domain (IPR006067 from INTERPRO), nitrite/sulphite reductase ferredoxin-like half domain (IPR005117 from INTERPRO) and pyridine nucleotide-disulphide oxidoreductase (IPR001327 from INTERPRO). It is also found in NifU nitrogen fixation proteins, in association with NifU-like N-terminal domain (IPR002871 from INTERPRO) and C-terminal domain (IPR001075 from INTERPRO).; PDB: 2HU9_A.
Probab=96.80 E-value=0.001 Score=48.90 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=28.5
Q ss_pred ccccCCCccHHHHHHHHHh-cCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHH
Q 006891 535 RLAHGYPFLEAEVAYCARN-EYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATE 591 (627)
Q Consensus 535 ~~~~~~~~~~aei~~a~~~-e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~ 591 (627)
.+|.|+.|++.||+.+|+. +.+.++.+ |+++|++|. .| ..|.+.|.++|+++
T Consensus 2 ~VC~C~~vt~~~I~~ai~~~~g~~t~~~-i~~~t~~g~-~C---g~C~~~v~~ll~e~ 54 (55)
T PF04324_consen 2 IVCRCNGVTEGEIRDAIREDNGARTLEE-IKRATGAGT-GC---GSCVPEVKDLLAEE 54 (55)
T ss_dssp EEETTTTEEHHHHHHHHHH-H-----HH-HHHHHTTSS--T---H-------------
T ss_pred EEeecCCcCHHHHHHHHHhhcccchHHH-HHHHcCCCC-CC---CCcccccccccccc
Confidence 4789999999999999986 66666666 899999986 35 37899898988875
No 302
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.79 E-value=0.014 Score=63.29 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+.+|..+++.|.+|+|+|+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 479999999999999999999999999999864
No 303
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.78 E-value=0.0017 Score=73.75 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
...+|+|||||.+|+++|+.|++.|++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3469999999999999999999999999999998643
No 304
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.77 E-value=0.016 Score=63.40 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-.|..+++.|.+|+|||+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 207 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 489999999999999999999999999999865
No 305
>PRK06116 glutathione reductase; Validated
Probab=96.77 E-value=0.017 Score=62.73 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|++.|.+|+++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 579999999999999999999999999998764
No 306
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.75 E-value=0.0087 Score=69.70 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCCCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcC
Q 006891 531 GLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 593 (627)
Q Consensus 531 ~~~~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~ 593 (627)
...+.+|+|.++++.|+...|+.+--.|..+++.+.- -+ -.| .-|-|.|+-+|+-.++
T Consensus 480 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~gc---~~c~p~~~~~l~~~~~ 537 (847)
T PRK14989 480 EVNNNLCEHFAYSRQELFHLIRVEGIKTFEELLAKHG-KG-YGC---EVCKPTVGSLLASCWN 537 (847)
T ss_pred cccccccCCcCCCHHHHHHHHHHcCCCCHHHHHHHhC-CC-CCC---chhhHHHHHHHHhcCc
Confidence 3456899999999999999999999998888765443 33 245 4799999999998744
No 307
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.75 E-value=0.016 Score=62.83 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|.+.|.+|+++++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 589999999999999999999999999998743
No 308
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.74 E-value=0.017 Score=62.77 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-.|..|++.|.+|+||++.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 489999999999999999999999999999864
No 309
>PLN03000 amine oxidase
Probab=96.73 E-value=0.0018 Score=73.93 Aligned_cols=39 Identities=21% Similarity=0.430 Sum_probs=34.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
...+|+|||||++|+.+|+.|++.|++|+|+|+++..+|
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 358999999999999999999999999999999864433
No 310
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.72 E-value=0.00063 Score=62.98 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~ 104 (627)
.+.||+|||+|.+|+++||..+++ .++|++||..-
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 457999999999999999999965 78999999974
No 311
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.70 E-value=0.0023 Score=69.79 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
...+|+|||+|.+|+++|+.|+++|++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3479999999999999999999999999999998643
No 312
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.70 E-value=0.0019 Score=74.33 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecC------C------C-------------cEEEEEcCeEEeccC
Q 006891 239 ALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNL------S------G-------------KEFDTYAKVVVNAAG 293 (627)
Q Consensus 239 ~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~------~------g-------------~~~~i~A~~VV~AtG 293 (627)
++.|.+.|++|.+++...+++.+++| +++|+++..+. . + ....+.||.||+|.|
T Consensus 647 v~~A~eEGV~f~~~~~P~~i~~d~~g-~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G 725 (1028)
T PRK06567 647 LIYALALGVDFKENMQPLRINVDKYG-HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG 725 (1028)
T ss_pred HHHHHHcCcEEEecCCcEEEEecCCC-eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc
Confidence 45678899999999999999887767 99999886422 1 1 446889999999999
Q ss_pred CC
Q 006891 294 PF 295 (627)
Q Consensus 294 ~~ 295 (627)
--
T Consensus 726 ~~ 727 (1028)
T PRK06567 726 IE 727 (1028)
T ss_pred cC
Confidence 43
No 313
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.66 E-value=0.025 Score=57.57 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 246 GAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 246 Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
|+++++++.++++..++ ++.++++.+..+++..++.+|.||+|+|.-.
T Consensus 191 gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred CeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 88899999999987643 5667777653456667899999999999543
No 314
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.61 E-value=0.023 Score=62.93 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=40.9
Q ss_pred cCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 245 AGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 245 ~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
.|+++++++.++++..++ + ++.+|.+.+..+++..++.+|.|++|+|.-.
T Consensus 400 ~gI~i~~~~~v~~i~~~~-g-~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDG-D-KVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred CCcEEEECcEEEEEEcCC-C-cEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 588999999999998764 5 7888888765556656899999999999754
No 315
>PRK14727 putative mercuric reductase; Provisional
Probab=96.55 E-value=0.025 Score=61.94 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
-.|+|||||.+|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 47999999999999999999999999999863
No 316
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.54 E-value=0.022 Score=61.75 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||+|.+|+-.|..|++.|.+|+|+|+.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999998853
No 317
>PLN02976 amine oxidase
Probab=96.54 E-value=0.003 Score=74.86 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=34.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
..+||+|||||++|+++|+.|+++|++|+|||+.+..+|
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 357999999999999999999999999999999864443
No 318
>PLN02507 glutathione reductase
Probab=96.53 E-value=0.027 Score=61.98 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-.|..+++.|.+|+|+++.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 479999999999999999999999999999754
No 319
>PTZ00058 glutathione reductase; Provisional
Probab=96.52 E-value=0.027 Score=62.60 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.-.|+|||||.+|+-.|..+++.|.+|+|+|+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 3579999999999999999999999999999864
No 320
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.51 E-value=0.0038 Score=65.52 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=33.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~ 107 (627)
..+|+|||+|.+|+.+|..|+++|++|+|+|+.+..+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 4689999999999999999999999999999986443
No 321
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.50 E-value=0.028 Score=61.19 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=29.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~ 103 (627)
-.|+|||||.+|+-+|..|++.|. +|+|+++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 479999999999999999999998 89999874
No 322
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.49 E-value=0.0035 Score=65.53 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
....|||||||++|++||..|-+.|. +|+|+|..+-
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR 56 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDR 56 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccc
Confidence 34689999999999999999997765 8999999863
No 323
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.48 E-value=0.0038 Score=68.41 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
..+|+|||||.+|+++|..|+++|++|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 36999999999999999999999999999999863
No 324
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.47 E-value=0.03 Score=60.77 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-.|..+++.|.+|+|+++.+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 479999999999999999999999999999754
No 325
>PRK10262 thioredoxin reductase; Provisional
Probab=96.46 E-value=0.037 Score=57.24 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=39.0
Q ss_pred HHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCC-CcEEEEEcCeEEeccCCChH
Q 006891 243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLS-GKEFDTYAKVVVNAAGPFCD 297 (627)
Q Consensus 243 ~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~-g~~~~i~A~~VV~AtG~~s~ 297 (627)
++.|++++.++.++++..++ + ++.+|++.+..+ ++..++.+|.||+|+|.-.+
T Consensus 196 ~~~gV~i~~~~~v~~v~~~~-~-~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGDQ-M-GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred cCCCeEEEeCCEEEEEEcCC-c-cEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence 45678999999999997654 4 577788765221 33457999999999996543
No 326
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.45 E-value=0.029 Score=65.16 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCe-EEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~-V~lvEk~ 103 (627)
-.|+|||||.+|+-+|..|.+.|.+ |+|+++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3799999999999999999999997 9999874
No 327
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.43 E-value=0.04 Score=62.24 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-.|..+++.|.+|+|||+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 479999999999999999999999999999865
No 328
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.37 E-value=0.0052 Score=65.88 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHH-HCCCeEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAA-TRGLRVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La-~~G~~V~lvEk~~~~~ 107 (627)
...|+|||||++|+.+|.+|+ +.|++|.|+|+.+..+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 357999999999999999765 6799999999987544
No 329
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.35 E-value=0.043 Score=59.91 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.++|||+|.+|+-.|..|++.|.+|+||++.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 479999999999999999999999999999754
No 330
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.33 E-value=0.05 Score=59.61 Aligned_cols=31 Identities=29% Similarity=0.211 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
-.++|||||.+|+-.|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 3699999999999999999999999999976
No 331
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.32 E-value=0.059 Score=58.14 Aligned_cols=33 Identities=33% Similarity=0.597 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 489999999999999999999999999999754
No 332
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.30 E-value=0.049 Score=59.62 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=37.1
Q ss_pred HHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 238 LALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 238 l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
+.+.+++.|+++++++.|+++..++++ ...|.+. +++ .+.+|.||+|+|.-.
T Consensus 237 l~~~L~~~GI~i~~~~~v~~i~~~~~~--~~~v~~~---~g~--~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 237 LTKQLRANGINIMTNENPAKVTLNADG--SKHVTFE---SGK--TLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEcCCc--eEEEEEc---CCC--EEEcCEEEEeeCCCc
Confidence 344456789999999999999876533 3334442 343 689999999999544
No 333
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.20 E-value=0.059 Score=58.83 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=29.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~ 104 (627)
-.|+|||+|.+|+-+|..+.+.|. +|+||++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 479999999999999999999996 699998754
No 334
>PRK14694 putative mercuric reductase; Provisional
Probab=96.17 E-value=0.061 Score=58.80 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=28.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
-.|+|||+|.+|+-.|..|++.|.+|+|+++
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~ 209 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLAR 209 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 4799999999999999999999999999976
No 335
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.16 E-value=0.068 Score=58.29 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-.|..|++.|.+|+|+|+.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 579999999999999999999999999999864
No 336
>PRK13984 putative oxidoreductase; Provisional
Probab=96.16 E-value=0.007 Score=68.40 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSG 108 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g 108 (627)
...+|+|||+|.+|+++|..|+++|++|+|+|+.+..+|
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 356899999999999999999999999999999875443
No 337
>PRK13748 putative mercuric reductase; Provisional
Probab=96.13 E-value=0.054 Score=60.74 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
-.|+|||||.+|+-.|..|++.|.+|+||++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 47999999999999999999999999999874
No 338
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.06 E-value=0.068 Score=63.08 Aligned_cols=32 Identities=38% Similarity=0.502 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
-.|+|||||.+|+-+|..+.+.|.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 37999999999999999999999999998764
No 339
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.02 E-value=0.0074 Score=64.22 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEec
Q 006891 232 SRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNA 291 (627)
Q Consensus 232 ~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~A 291 (627)
.++.+++.+.+.-.|+.+..++.|.+|..+++| ++.||.. +| ..++|+.||..
T Consensus 232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g-~~~gV~s----~g--e~v~~k~vI~d 284 (438)
T PF00996_consen 232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDG-KVIGVKS----EG--EVVKAKKVIGD 284 (438)
T ss_dssp THHHHHHHHHHHHTT-EEESS--EEEEEEETTT-EEEEEEE----TT--EEEEESEEEEE
T ss_pred ccHHHHHHHHhhhcCcEEEeCCccceeeeecCC-eEEEEec----CC--EEEEcCEEEEC
Confidence 588999999998999999999999999997778 8888754 34 47899999943
No 340
>PTZ00052 thioredoxin reductase; Provisional
Probab=95.98 E-value=0.099 Score=57.57 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
-.++|||||.+|+-.|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 3799999999999999999999999999975
No 341
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.96 E-value=0.078 Score=57.13 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHHHhhhhc
Q 006891 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDSVRKLAD 304 (627)
Q Consensus 237 ~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~l~~~~g 304 (627)
.+.+..++.|++++.+++|+++.. + . |++. +|+ ++.+|.||.|+|.-...+.+.++
T Consensus 233 ~~~~~L~~~gV~v~~~~~v~~v~~---~-~---v~~~---~g~--~i~~d~vi~~~G~~~~~~~~~~~ 288 (424)
T PTZ00318 233 YGQRRLRRLGVDIRTKTAVKEVLD---K-E---VVLK---DGE--VIPTGLVVWSTGVGPGPLTKQLK 288 (424)
T ss_pred HHHHHHHHCCCEEEeCCeEEEEeC---C-E---EEEC---CCC--EEEccEEEEccCCCCcchhhhcC
Confidence 334455678999999999998853 2 2 4443 354 78999999999976655555444
No 342
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.94 E-value=0.082 Score=55.46 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCe-EEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLR-VGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~-V~lvEk~~ 104 (627)
-.|+|||+|.+|+-+|..|+++|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 3699999999999999999999997 99998743
No 343
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.80 E-value=0.08 Score=57.91 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=28.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..+.+.|. +|++++...
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 369999999999999999999987 788776543
No 344
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.79 E-value=0.089 Score=55.36 Aligned_cols=54 Identities=19% Similarity=0.091 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 237 GLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 237 ~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
.+....+++|++++.++.+.++..+.+| ++.-|.+.| |+ ++.||.||.++|.-.
T Consensus 260 ~~~~y~e~kgVk~~~~t~~s~l~~~~~G-ev~~V~l~d---g~--~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 260 FYEDYYENKGVKFYLGTVVSSLEGNSDG-EVSEVKLKD---GK--TLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHhcCeEEEEecceeecccCCCC-cEEEEEecc---CC--EeccCeEEEeecccc
Confidence 3444557899999999999999998888 998888854 54 799999999999653
No 345
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.79 E-value=0.0098 Score=63.95 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=32.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDFS 106 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~ 106 (627)
-.|.|||+|.+|+++|..|++.|++|+++|+.+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 58999999999999999999999999999998743
No 346
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.78 E-value=0.011 Score=63.03 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCChHH-Hhhhhc
Q 006891 231 DSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFCDS-VRKLAD 304 (627)
Q Consensus 231 ~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s~~-l~~~~g 304 (627)
+..+...+.+.++++|++++++++|+++.. + + .+ .|.+ .+|+ .+.+|.||+|+|...+. +.+..+
T Consensus 185 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~-~~-~v~l---~~g~--~i~aD~Vv~a~G~~pn~~l~~~~g 250 (396)
T PRK09754 185 PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-G-E-KV-ELTL---QSGE--TLQADVVIYGIGISANDQLAREAN 250 (396)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-C-EE-EEEE---CCCC--EEECCEEEECCCCChhhHHHHhcC
Confidence 345556677778889999999999999876 3 2 33 2444 2344 68999999999987643 444334
No 347
>PLN02546 glutathione reductase
Probab=95.72 E-value=0.14 Score=56.94 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-+|+|||||.+|+-.|..|++.|.+|+|+++.+
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 489999999999999999999999999998754
No 348
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.011 Score=58.76 Aligned_cols=34 Identities=38% Similarity=0.444 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
.-|-|||||.+|+-+||.++++|.+|.|.|-.+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4699999999999999999999999999998753
No 349
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.27 E-value=0.18 Score=60.18 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=27.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCe-EEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~-V~lvEk~ 103 (627)
-.|+|||||.+|+=+|+.+.+.|.+ |+++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4799999999999999999999985 7777654
No 350
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.24 E-value=0.026 Score=52.90 Aligned_cols=31 Identities=39% Similarity=0.567 Sum_probs=27.5
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
|.|||+|..|..+|..++..|++|+|+|.+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 8999999999999999999999999999854
No 351
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.24 E-value=0.019 Score=59.03 Aligned_cols=36 Identities=25% Similarity=0.532 Sum_probs=31.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC----CCeEEEEcCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR----GLRVGLVERED 104 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~----G~~V~lvEk~~ 104 (627)
+..|||||||||.+|++.|..|... -+||.|+|.++
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 3479999999999999999999854 57999999985
No 352
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.21 E-value=0.091 Score=55.08 Aligned_cols=68 Identities=16% Similarity=0.075 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh----------HHH
Q 006891 230 NDSRLNVGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC----------DSV 299 (627)
Q Consensus 230 ~~~~l~~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s----------~~l 299 (627)
....++.+|...+++.||+|+++++|++| ++++ ..+.+. ++ ...++||.||+|||+.+ -.+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~---~~v~~~---~~-~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~l 154 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT---LRFETP---DG-QSTIEADAVVLALGGASWSQLGSDGAWQQV 154 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc---EEEEEC---CC-ceEEecCEEEEcCCCccccccCCCcHHHHH
Confidence 35678899999999999999999999999 2322 345442 22 23689999999999865 245
Q ss_pred hhhhcCC
Q 006891 300 RKLADQN 306 (627)
Q Consensus 300 ~~~~g~~ 306 (627)
++.+|..
T Consensus 155 a~~lGh~ 161 (376)
T TIGR03862 155 LDQRGVS 161 (376)
T ss_pred HHHCCCc
Confidence 5556644
No 353
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.00 E-value=0.025 Score=60.97 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
...+|||||||.+|+.+|..|...+.+|+|||+++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 45799999999999999999987789999999875
No 354
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.63 E-value=0.045 Score=50.08 Aligned_cols=31 Identities=39% Similarity=0.488 Sum_probs=29.2
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
|.|||||..|.++|..|+.+|.+|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 8999999999999999999999999998853
No 355
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=0.04 Score=56.40 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=41.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC-CCCCcCCCCCccc
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRGLRVGLVEREDF-SSGTSSRSTKLIH 118 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~-~~g~S~~~~~~i~ 118 (627)
..+|||||||-|..-...|.+.++.|.+|+-+|.+.+ |+..++.+-.++|
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ih 56 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIH 56 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhh
Confidence 3469999999999999999999999999999999974 5556666655554
No 356
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.061 Score=54.55 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=37.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSS 111 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~ 111 (627)
..|||+|.|-|+.=+..+..|+..|.+|++||+++.-+++++
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~a 46 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSA 46 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccc
Confidence 469999999999999999999999999999999997665543
No 357
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.42 E-value=0.057 Score=54.99 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=33.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCeEEEEcCCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATR--GLRVGLVEREDFSSG 108 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~~~~g 108 (627)
...|+|||+|.+|..+|..|.++ +++|.|+|+.+...|
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 34899999999999999999985 789999999976554
No 358
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.40 E-value=0.44 Score=54.34 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~ 104 (627)
-.|+|||||.+|+-+|..|.+.|. +|+|+++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999999997 599998754
No 359
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.39 E-value=0.86 Score=47.31 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=32.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC-CeEEEEcCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATRG-LRVGLVERED 104 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~G-~~V~lvEk~~ 104 (627)
+..+|++.||-|..-++.|..|.+.+ .+++.+||..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 45699999999999999999999985 7899999975
No 360
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.30 E-value=0.065 Score=48.55 Aligned_cols=31 Identities=45% Similarity=0.558 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
|+|||+|..|+..|+.|++.|.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998854
No 361
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=94.18 E-value=0.045 Score=58.27 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=32.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
..||.+|||+|.+|+.+|..|++.|++|+++-|-.
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~ 88 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLF 88 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEeccc
Confidence 34999999999999999999999999999998863
No 362
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.12 E-value=0.56 Score=56.17 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=41.9
Q ss_pred HHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh-HHHhhhhcC
Q 006891 243 ALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC-DSVRKLADQ 305 (627)
Q Consensus 243 ~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s-~~l~~~~g~ 305 (627)
+++|+++++++.|+.+..+ + ++.+|++.. .+++..++.+|.|+++.|.-. .+|...++.
T Consensus 362 ~~~GV~i~~~~~v~~i~g~--~-~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGG--K-RVSGVAVAR-NGGAGQRLEADALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHcCCEEEcCCeEEEEecC--C-cEEEEEEEe-cCCceEEEECCEEEEcCCcCchhHHHHhcCC
Confidence 4678899999999988654 3 677888763 234456899999999999643 245555443
No 363
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=93.99 E-value=0.14 Score=38.81 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=43.2
Q ss_pred cccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcC
Q 006891 536 LAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHK 593 (627)
Q Consensus 536 ~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~ 593 (627)
+|.|..|++.+|+.||+...+.++. -|.+.|..+. .| +.|.+.+.++|.+.+.
T Consensus 3 VC~C~~Vtd~~I~~ai~~~g~~s~~-~l~~~~~~g~-~C---G~C~~~i~~il~~~~~ 55 (64)
T PRK10509 3 VCLCNGVSDKKIRQAVRQFHPQSFQ-QLRKFVPVGN-QC---GKCIRAAREVMQDELM 55 (64)
T ss_pred EEecCCCCHHHHHHHHHHcCCCCHH-HHHHhcCCCC-Cc---cchHHHHHHHHHHHHH
Confidence 5789999999999999965565655 5899999997 45 4899999999987753
No 364
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=93.99 E-value=0.27 Score=57.21 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=24.8
Q ss_pred CcEEEECCChHHHHHHHHHHHC---CCeEEEEcC
Q 006891 72 LDILVIGGGATGCGVALDAATR---GLRVGLVER 102 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~---G~~V~lvEk 102 (627)
-.|||||||.+|+=+|..+... +..+.+++.
T Consensus 551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~ 584 (1028)
T PRK06567 551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDY 584 (1028)
T ss_pred CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhh
Confidence 4699999999999999977653 666776665
No 365
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.98 E-value=0.063 Score=57.33 Aligned_cols=34 Identities=44% Similarity=0.712 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
..+++|||+|..|+.+|..|+++|++|+|+|+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc
Confidence 3699999999999999999999999999999986
No 366
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.78 E-value=0.071 Score=51.93 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.++|||+|-.|...|..|++.|..|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999999974
No 367
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.54 E-value=0.088 Score=49.54 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||.|.+|+.+|..+|+.|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 48999999999999999999999999999864
No 368
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.49 E-value=0.087 Score=54.11 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
+|.|||+|..|.+.|..|+++|++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999863
No 369
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.46 E-value=0.094 Score=60.14 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
-..|.|||+|.+|+++|-.|-+.|+.|+|.||.+-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 46899999999999999999999999999999874
No 370
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.25 E-value=0.1 Score=57.32 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999764
No 371
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.21 E-value=1.3 Score=48.25 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=37.7
Q ss_pred cCCEEEcCcEEEEEEEc--CCCCeEEEEEEEec--------------CCCcEEEEEcCeEEeccCCCh
Q 006891 245 AGAAVLNHAEVISLIKD--EASNRIIGARIRNN--------------LSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 245 ~Gv~i~~~t~V~~l~~~--~~g~~v~gV~~~d~--------------~~g~~~~i~A~~VV~AtG~~s 296 (627)
.++.|++...-++|+.+ ++| +|.++++... .+|+...+.+|.||.|-|.-+
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~-~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNG-HVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCC-cEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 57899998888888743 336 8999988621 145566789999999999654
No 372
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=93.00 E-value=0.057 Score=41.00 Aligned_cols=16 Identities=31% Similarity=-0.016 Sum_probs=12.0
Q ss_pred CchhhhhHHHHHHHHH
Q 006891 1 MSATRIRRFGAVLAAA 16 (627)
Q Consensus 1 msrR~f~~~~a~~ga~ 16 (627)
+|||+|||+.++++++
T Consensus 9 ~sRR~Flk~lg~~aaa 24 (66)
T TIGR02811 9 PSRRDLLKGLGVGAAA 24 (66)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4799999987765543
No 373
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.97 E-value=0.14 Score=52.54 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|...|..++..|++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999854
No 374
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.82 E-value=0.25 Score=47.16 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||+|..|+.+|..|++.|. +++|+|...+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4789999999999999999999999 6999998743
No 375
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.54 E-value=0.16 Score=51.43 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|...|..++..|++|+|+|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 376
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.54 E-value=0.14 Score=55.77 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|+|||.|.+|+++|+.|.++|++|++.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 48999999999999999999999999999875
No 377
>COG2906 Bfd Bacterioferritin-associated ferredoxin [Inorganic ion transport and metabolism]
Probab=92.51 E-value=0.35 Score=35.84 Aligned_cols=51 Identities=6% Similarity=0.101 Sum_probs=41.3
Q ss_pred cccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHc
Q 006891 536 LAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEH 592 (627)
Q Consensus 536 ~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l 592 (627)
+|-|.-||..+|+.||+.- +.++.| |+++|.+|- .| +.|.....++|.+++
T Consensus 3 VClCngVtD~~Ir~av~~g-~tt~~e-l~~~~gvGs-~C---GkC~~~Arevl~e~~ 53 (63)
T COG2906 3 VCLCNGVTDKQIREAVAQG-ATTLKE-LRRFTGVGS-QC---GKCVRAAREVLEEAL 53 (63)
T ss_pred EEeecCccHHHHHHHHHHc-CCCHHH-HHHHcCccc-ch---HHHHHHHHHHHHHHH
Confidence 4678999999999999964 666666 899998885 34 488888889998775
No 378
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence. Members with small amino acid side chains at the -1 and -3 positions from the C-terminus of the model should be predicted to be cleaved as are Sec pathway signal sequences. Members are almost exclusively bacterial, although archaeal sequences are also found. A large fraction of the members of this family may have bound redox-active cofactors.
Probab=92.47 E-value=0.098 Score=32.64 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=12.6
Q ss_pred CchhhhhHHHHHHHHH
Q 006891 1 MSATRIRRFGAVLAAA 16 (627)
Q Consensus 1 msrR~f~~~~a~~ga~ 16 (627)
+|||+|+|..++++++
T Consensus 1 ~sRR~Flk~~~~~~a~ 16 (29)
T TIGR01409 1 LSRRDFLKGAAAAGAA 16 (29)
T ss_pred CchhhhHHHHHHHHHH
Confidence 6899999998765544
No 379
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.43 E-value=0.19 Score=51.75 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
...|+|||+|..|...|..|++.|.+|+++.++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 357999999999999999999999999999875
No 380
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.43 E-value=0.16 Score=51.50 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|.+.|..+++.|.+|+++|.+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999753
No 381
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.071 Score=54.73 Aligned_cols=42 Identities=29% Similarity=0.544 Sum_probs=38.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCCCCCCcC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVEREDFSSGTSS 111 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~~~g~S~ 111 (627)
.+|||+|+|-|..=+..+..|+..|.+|+.+||++.-++.|+
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa 44 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA 44 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence 459999999999999999999999999999999997776654
No 382
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.21 E-value=0.17 Score=51.35 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 48999999999999999999999999999864
No 383
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.89 E-value=0.15 Score=54.45 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCEEEcCcEEEEEEEcCCCCeEEEEEEEecCCCcEEEEEcCeEEeccCCCh
Q 006891 236 VGLALTAALAGAAVLNHAEVISLIKDEASNRIIGARIRNNLSGKEFDTYAKVVVNAAGPFC 296 (627)
Q Consensus 236 ~~l~~~a~~~Gv~i~~~t~V~~l~~~~~g~~v~gV~~~d~~~g~~~~i~A~~VV~AtG~~s 296 (627)
..+...+...|.+|+++++|++|..++ + +|. |.. .+|+ .+.||.||+|+....
T Consensus 213 ~~~~~~~~~~g~~i~l~~~V~~I~~~~-~-~v~-v~~---~~g~--~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 213 LALALAAEELGGEIRLNTPVTRIERED-G-GVT-VTT---EDGE--TIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHHHGGGEESSEEEEEEEEES-S-EEE-EEE---TTSS--EEEESEEEE-S-HHH
T ss_pred HHHHHHHhhcCceeecCCcceeccccc-c-ccc-ccc---ccce--EEecceeeecCchhh
Confidence 334445556688999999999999987 4 553 444 3454 899999999999754
No 384
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.85 E-value=0.16 Score=47.99 Aligned_cols=33 Identities=39% Similarity=0.666 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|.|||+|..|..+|.-++..|+.|.|++++.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 579999999999999999999999999999864
No 385
>PRK07846 mycothione reductase; Reviewed
Probab=91.59 E-value=0.22 Score=54.13 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.-+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 3589999999999999999999999999999865
No 386
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.47 E-value=0.28 Score=46.97 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
-.|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999764
No 387
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=91.43 E-value=0.36 Score=46.42 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFSS 107 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~~~ 107 (627)
+..|+|||-|-+|.+++-.|++.|. +++|||..++.-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v 67 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV 67 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc
Confidence 4789999999999999999999998 899999998753
No 388
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.42 E-value=0.25 Score=50.32 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
..|.|||+|..|...|..|+++|++|+++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35999999999999999999999999999975
No 389
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.30 E-value=0.21 Score=47.55 Aligned_cols=34 Identities=32% Similarity=0.520 Sum_probs=28.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.-.|+|||+|.++.-+|+.|++.|.+|+++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4689999999999999999999999999998865
No 390
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.28 E-value=0.26 Score=50.14 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|.+.|..++++|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999854
No 391
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.25 E-value=0.3 Score=53.07 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.-.|+|||+|.+|+++|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999864
No 392
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.21 E-value=0.27 Score=50.35 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
..|+|||+|.+|...|..|++.|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 36999999999999999999999999999884
No 393
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.20 E-value=0.33 Score=44.32 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
.-.|+|||||-+|..-|..|.+.|.+|+||..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 35799999999999999999999999999953
No 394
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.13 E-value=0.33 Score=44.90 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
...|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3679999999999999999999999999999863
No 395
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.05 E-value=0.33 Score=46.37 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
...|+|||||-+|...|..|.+.|.+|+|+++
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 35799999999999999999999999999975
No 396
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=90.86 E-value=0.16 Score=49.13 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=26.6
Q ss_pred EEEECCChHHHHHHHHHHHC--CCeEEEEcCCC
Q 006891 74 ILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~ 104 (627)
.+||||||+|.+||-.|+.. ..+|+|+-...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 68999999999999999975 67888887654
No 397
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.86 E-value=0.29 Score=52.70 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.++|||||..|+-.|..+++.|.+|+|||+.+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~ 206 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGD 206 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 469999999999999999999999999999986
No 398
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.84 E-value=0.46 Score=47.30 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-CeEEEEcCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRG-LRVGLVEREDF 105 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G-~~V~lvEk~~~ 105 (627)
....|+|||.|.+|+.+|..|++.| -+++|+|...+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 3578999999999999999999999 48999998764
No 399
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=90.76 E-value=0.28 Score=53.13 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-.|..|++.|.+|+|+++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 479999999999999999999999999999864
No 400
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=90.64 E-value=0.37 Score=53.59 Aligned_cols=57 Identities=11% Similarity=0.033 Sum_probs=48.9
Q ss_pred CccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHcCCCH
Q 006891 534 KRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEHKWDK 596 (627)
Q Consensus 534 ~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l~w~~ 596 (627)
..+|.|..|++++|+.||. -.+++.|-|+.+|.++- .| +-|.|-|.++|+.++|-..
T Consensus 413 ~~IC~Cn~VtKG~I~~aI~--~g~~tv~~vk~~TkA~t-sC---GsC~plveqlL~~~~~~~~ 469 (793)
T COG1251 413 AQICGCNGVTKGAIIGAIT--KGCTTVDEVKACTKAGT-SC---GSCKPLVEQLLAATLGDQF 469 (793)
T ss_pred CeeecCCCccHHHHHHHHH--ccCCCHHHHHHhhcCCC-CC---cCcHHHHHHHHHhhccccc
Confidence 5788999999999999999 35666667999999998 46 4799999999999998653
No 401
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.60 E-value=0.46 Score=42.13 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCe-EEEEcCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~-V~lvEk~ 103 (627)
...++|||+|-+|-++++.|+..|.+ |+|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999999999999999999997 9999875
No 402
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.59 E-value=0.22 Score=49.56 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
...+|+|||||++|.-+|.-+..-|.+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 3468999999999999999999999999999986
No 403
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.47 E-value=0.33 Score=49.13 Aligned_cols=32 Identities=41% Similarity=0.560 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|.+|.+.|..++++|++|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 59999999999999999999999999998753
No 404
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.27 E-value=0.48 Score=40.56 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
|+|||.|-.|..++..|.+.+.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999974
No 405
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.07 E-value=0.35 Score=49.47 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
.|+|||+|..|...|..|++.|.+|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999987
No 406
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.03 E-value=0.33 Score=49.17 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|.|||+|..|..+|..+|..|++|+++|..
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 5999999999999999999988999999986
No 407
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.99 E-value=0.39 Score=49.10 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|+|||+|..|...|..|++.|.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999999999974
No 408
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.96 E-value=0.47 Score=49.22 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||+|-.|+.+|..|++.|. +++|+|.+.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 4789999999999999999999999 8999999754
No 409
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.87 E-value=0.4 Score=49.03 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHCCC-eEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~ 103 (627)
.|.|||+|.+|+.+|+.++.+|+ +|+|+|..
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999887 89999983
No 410
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.84 E-value=0.4 Score=50.15 Aligned_cols=31 Identities=42% Similarity=0.590 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRG-LRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G-~~V~lvEk~ 103 (627)
+|+|||+|-+|..+|+.|+++| .+|++.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 7999999999999999999999 899999997
No 411
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.81 E-value=0.26 Score=41.40 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
...|+|||||-.|..-+..|.+.|.+|+|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 467999999999999999999999999999876
No 412
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.79 E-value=0.43 Score=48.66 Aligned_cols=32 Identities=34% Similarity=0.578 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|...|..++..|++|+++|++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 49999999999999999999999999999753
No 413
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.76 E-value=0.39 Score=52.64 Aligned_cols=33 Identities=39% Similarity=0.561 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
..|.|||+|..|..+|..+++.|++|+|+|+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999999999999864
No 414
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=89.73 E-value=0.4 Score=52.17 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.++|||||.+|+-.|..|++.|.+|+|||+.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 589999999999999999999999999999864
No 415
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.67 E-value=0.48 Score=42.00 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~~ 106 (627)
..|+|||+|..|+.+|..|++.|. +++|+|...+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 569999999999999999999998 79999998653
No 416
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.64 E-value=0.56 Score=43.30 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCCcEEEECCCh-HHHHHHHHHHHCCCeEEEEcCC
Q 006891 70 NPLDILVIGGGA-TGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 70 ~~~DVvIIGgGi-~G~~~A~~La~~G~~V~lvEk~ 103 (627)
....|+|||+|- +|..+|..|.++|.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457899999996 6999999999999999999875
No 417
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.61 E-value=0.37 Score=55.36 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|..+|..++..|++|+|+|..+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999863
No 418
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.58 E-value=0.46 Score=48.74 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRG--LRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G--~~V~lvEk~~ 104 (627)
.|.|||+|.+|+++|+.|+.+| ..|+|+|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 4899999863
No 419
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.53 E-value=0.38 Score=55.18 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|..+|..++..|+.|+|+|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999863
No 420
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.39 E-value=0.42 Score=49.81 Aligned_cols=31 Identities=35% Similarity=0.580 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|.|||+|..|...|..|++.|++|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999873
No 421
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.39 E-value=0.52 Score=51.86 Aligned_cols=33 Identities=39% Similarity=0.517 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|.|||+|..|..+|..+++.|+.|+|+|+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 359999999999999999999999999999864
No 422
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.38 E-value=0.52 Score=43.83 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=29.5
Q ss_pred EEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
|+|||+|..|+.+|..|++.|. +++|+|.+.+
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 8999999999999999999999 5999998754
No 423
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.14 E-value=0.67 Score=41.48 Aligned_cols=33 Identities=27% Similarity=0.618 Sum_probs=30.3
Q ss_pred EEEECCChHHHHHHHHHHHCCC-eEEEEcCCCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~~ 106 (627)
|+|||.|-.|+.+|..|++.|. +++|+|...+.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 8999999999999999999998 79999987643
No 424
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.83 E-value=0.62 Score=48.34 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||+|-.|+.+|..|++.|. +++|+|...+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4679999999999999999999998 8999999754
No 425
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.83 E-value=0.54 Score=48.33 Aligned_cols=31 Identities=35% Similarity=0.633 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|.|||+|..|.+.|..|++.|++|+++|.+
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999875
No 426
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.82 E-value=0.58 Score=49.25 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
..+|+|||+|.+|..+|..|...|.+|+++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 457999999999999999999999999999875
No 427
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=88.79 E-value=1.7 Score=48.65 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=41.3
Q ss_pred CCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHH
Q 006891 533 GKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMAT 590 (627)
Q Consensus 533 ~~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~ 590 (627)
-+.+|.|.++++.||+..|+..--.++.- |....+... .| .-|.|.+.-.|+-
T Consensus 472 ~~~~c~~~~~~~~~~~~~i~~~~~~~~~~-v~~~~~~~~-gc---~~c~pa~~~~l~~ 524 (793)
T COG1251 472 NNAICGCTDLSRDEVVHLIRAKGLKTFPE-VMNVLGWKT-GC---AKCRPAINYYLAS 524 (793)
T ss_pred ccccccCcCCCHHHHHHHHHHhccCCHHH-HHHHhcccC-Cc---ceechhhccceee
Confidence 46899999999999999999887777665 677777776 45 3677777766654
No 428
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=88.64 E-value=0.49 Score=54.51 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|..+|..++..|++|+|+|..+
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 59999999999999999999999999999864
No 429
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.51 E-value=0.75 Score=43.94 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
+..|+|||.|..|..+|..|++.|. +++|+|...+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 5789999999999999999999998 8999998754
No 430
>PRK04148 hypothetical protein; Provisional
Probab=88.48 E-value=0.48 Score=41.69 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.+++||.| .|...|..|++.|.+|+.+|.+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 469999999 99999999999999999999864
No 431
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.32 E-value=0.72 Score=43.98 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
-.|+|+|.|-+|..+|..|.+.|.+|++.|.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999998764
No 432
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=88.22 E-value=0.5 Score=52.80 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||||.+|+-.|..|++.|.+|+|+++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 479999999999999999999999999999864
No 433
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.13 E-value=0.79 Score=45.09 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=32.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~~ 106 (627)
...|+|||+|-.|+.+|..|++.|. +++|+|...+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 4789999999999999999999997 79999987653
No 434
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.92 E-value=0.79 Score=47.03 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
..|.|||+|..|.+.|..|++.|++|.++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999863
No 435
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.91 E-value=0.81 Score=44.08 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||+|..|+.+|..|++.|. +++|+|...+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 4789999999999999999999998 5999998754
No 436
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=87.88 E-value=0.52 Score=47.07 Aligned_cols=36 Identities=36% Similarity=0.692 Sum_probs=30.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-CC-eEEEEcCCC
Q 006891 69 SNPLDILVIGGGATGCGVALDAATR-GL-RVGLVERED 104 (627)
Q Consensus 69 ~~~~DVvIIGgGi~G~~~A~~La~~-G~-~V~lvEk~~ 104 (627)
..+|.|+|||||..|++.|..+.++ |. +|.|||-.+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 5679999999999999999999876 43 899999763
No 437
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.61 E-value=0.62 Score=47.61 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHHHCCC-eEEEEcCC
Q 006891 74 ILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~-~V~lvEk~ 103 (627)
|.|||+|.+|..+|+.++..|+ .|+|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987 99999986
No 438
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=87.50 E-value=0.78 Score=47.25 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~ 104 (627)
..|.|||+|.+|..+|+.++..|+ +|+|+|...
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 479999999999999999999996 999999864
No 439
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.43 E-value=0.72 Score=47.75 Aligned_cols=31 Identities=26% Similarity=0.550 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|.|||+|..|.+.|..|++.|.+|.++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4899999999999999999999999999874
No 440
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.42 E-value=0.72 Score=47.78 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||.|.+|+..|..+|+.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58999999999999999999999999999863
No 441
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=87.32 E-value=0.82 Score=46.24 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~ 103 (627)
..|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 579999999999999999999998 79999885
No 442
>PRK08328 hypothetical protein; Provisional
Probab=87.25 E-value=0.99 Score=44.13 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||+|-.|+.+|..|++.|. +++|+|...+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4679999999999999999999998 6999987654
No 443
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=87.14 E-value=0.8 Score=49.07 Aligned_cols=33 Identities=33% Similarity=0.220 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
..|.|||.|.+|+..|..|+++|++|+++|.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 359999999999999999999999999999863
No 444
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.13 E-value=0.68 Score=41.09 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.4
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
++|+|+|..+.+.+..+..-|++|+|+|-..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999873
No 445
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.04 E-value=0.81 Score=47.42 Aligned_cols=31 Identities=39% Similarity=0.586 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|.|||+|..|...|..|++.|++|.++++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5999999999999999999999999999884
No 446
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.81 E-value=1.1 Score=40.00 Aligned_cols=32 Identities=31% Similarity=0.596 Sum_probs=28.9
Q ss_pred cEEEECC-ChHHHHHHHHHHHCCC--eEEEEcCCC
Q 006891 73 DILVIGG-GATGCGVALDAATRGL--RVGLVERED 104 (627)
Q Consensus 73 DVvIIGg-Gi~G~~~A~~La~~G~--~V~lvEk~~ 104 (627)
.|.|||+ |.+|.++|+.|...++ +++|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 9999999999999976 799999873
No 447
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.79 E-value=0.71 Score=53.08 Aligned_cols=31 Identities=35% Similarity=0.582 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHH-HCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAA-TRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La-~~G~~V~lvEk~ 103 (627)
.|.|||+|..|..+|..++ ..|+.|+|+|..
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~ 342 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDIN 342 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCC
Confidence 5999999999999999999 889999999975
No 448
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.73 E-value=0.85 Score=47.08 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|.|||+|..|...|..|++.|++|.++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 5999999999999999999999999999885
No 449
>PRK08223 hypothetical protein; Validated
Probab=86.69 E-value=1.5 Score=43.93 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||+|-.|+.+|..|++.|. ++.|+|.+.+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 5789999999999999999999998 7999988754
No 450
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.49 E-value=0.89 Score=48.29 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|+|.|..|..+|..|...|.+|+++|..+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 369999999999999999999999999998754
No 451
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=86.47 E-value=0.78 Score=49.18 Aligned_cols=32 Identities=34% Similarity=0.305 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||.|.+|+..|..|+++|++|+++|++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 48999999999999999999999999999863
No 452
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=86.43 E-value=0.83 Score=50.21 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|.+.|..+++.|++|+|+|+..
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999853
No 453
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.41 E-value=1.5 Score=42.80 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=32.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDFS 106 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~~ 106 (627)
...|+|||.|-+|..+|..|++.|. +++|+|...+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~ 47 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVC 47 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEEC
Confidence 4689999999999999999999998 89999987643
No 454
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=86.31 E-value=1 Score=43.90 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCe---EEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLR---VGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~---V~lvEk~~ 104 (627)
..|+|+|+|-+|.++|..|.+.|.+ |.|+++..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4799999999999999999999985 99999863
No 455
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=86.31 E-value=1.1 Score=43.94 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=30.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-----------CeEEEEcCCCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRG-----------LRVGLVEREDF 105 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G-----------~~V~lvEk~~~ 105 (627)
....|+|||+|-.|+.++..|++.| .+++|+|.+.+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 4579999999999999999999974 38899988654
No 456
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.28 E-value=1.1 Score=44.18 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
+..|+|||.|..|+.+|..|++.|. +++|+|...+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 5789999999999999999999997 8999998754
No 457
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=86.26 E-value=0.83 Score=52.43 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHH-HCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAA-TRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La-~~G~~V~lvEk~~ 104 (627)
.|.|||+|..|..+|..++ ..|++|+|+|..+
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5999999999999999998 5899999999863
No 458
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.02 E-value=1.1 Score=41.02 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|-|||-|..|...|..|.+.|++|.+.++.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 6899999999999999999999999999976
No 459
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.97 E-value=1.8 Score=42.31 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||.|..|+.+|..|++.|. +++|+|...+
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4689999999999999999999998 7999988754
No 460
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.84 E-value=0.89 Score=49.63 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
...|+|||+|.+|+.++..|...|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 461
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.79 E-value=0.91 Score=49.27 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|+|+|+|.+|+++|..|++.|++|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 58999999999999999999999999998754
No 462
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.73 E-value=1.1 Score=45.98 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-eEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL-RVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~ 103 (627)
..|.|||+|.+|..+|+.++..|+ .|+|+|..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 369999999999999999999876 99999984
No 463
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.65 E-value=0.96 Score=45.68 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|.|||.|..|.+.|..|.++|.+|.+++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 4899999999999999999999999999874
No 464
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.57 E-value=1.3 Score=48.15 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|+|.|.+|+++|+.|+++|++|++.|..+
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 369999999999999999999999999999764
No 465
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=85.42 E-value=1.4 Score=45.19 Aligned_cols=34 Identities=18% Similarity=0.462 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC--eEEEEcCC
Q 006891 70 NPLDILVIGGGATGCGVALDAATRGL--RVGLVERE 103 (627)
Q Consensus 70 ~~~DVvIIGgGi~G~~~A~~La~~G~--~V~lvEk~ 103 (627)
....|.|||+|-+|.++|+.|+..|+ .++|+|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 34689999999999999999999998 79999985
No 466
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.11 E-value=1.2 Score=45.65 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCC--eEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGL--RVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~--~V~lvEk~~ 104 (627)
.|+|||+|-+|.++|+.|+..|. .++|+|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 48999999999999999999994 799999863
No 467
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=84.85 E-value=1.1 Score=47.59 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|.|||.|.+|+.+|..++. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 38999999999999988885 99999999864
No 468
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=84.80 E-value=1.3 Score=40.33 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=27.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
..++|+|=|-.|-.+|..|...|.+|+|.|.++
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 469999999999999999999999999999965
No 469
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=84.69 E-value=1.2 Score=45.08 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCe-EEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLR-VGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~-V~lvEk~ 103 (627)
..++|+|+|-+|.++|+.|++.|.+ |+|+.|.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4699999999999999999999996 9999874
No 470
>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.
Probab=84.69 E-value=1.6 Score=44.03 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=46.4
Q ss_pred CCCCccccCCCccHHHHHHHHHhcCCCChhHHHHhhcccccCChHHHhhhHHHHHHHHHHHc
Q 006891 531 GLGKRLAHGYPFLEAEVAYCARNEYCESAVDFVARRCRLAFLDTDAAGRALPRIIEIMATEH 592 (627)
Q Consensus 531 ~~~~~~~~~~~~~~aei~~a~~~e~~~~~~D~l~RRtr~~~~~~~~~~~~~~~v~~~~~~~l 592 (627)
+.+..+|.|..|++.+|..||+.-.+.++.+ |..+|++|- .| +.|.+.+.++|.+.+
T Consensus 131 ~~~~~VC~C~~Vt~~~I~~ai~~~g~~t~~e-l~~~t~agt-~C---G~C~~~~~~il~~~~ 187 (290)
T TIGR02000 131 DEGALVCKCFGVDENMVRRAVIENDLTTLEE-VTNYTKAGG-GC---GSCHEKIEDVLKEVL 187 (290)
T ss_pred CCCCeEeecCCCcHHHHHHHHHHcCCCcHHH-HHhhccCCC-CC---cchHHHHHHHHHHHH
Confidence 3457899999999999999998556666666 899999997 45 478889989887653
No 471
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.39 E-value=1.8 Score=41.18 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
+..|+|||.|..|+.+|..|++.|. +++|+|...+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 4789999999999999999999998 5999998754
No 472
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.27 E-value=0.8 Score=46.33 Aligned_cols=31 Identities=39% Similarity=0.478 Sum_probs=27.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk 102 (627)
-||.|||||.+|.-+|..||--=..|+|+|=
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF 385 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 385 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence 4899999999999999999955558999884
No 473
>PLN02572 UDP-sulfoquinovose synthase
Probab=84.15 E-value=1.1 Score=48.57 Aligned_cols=30 Identities=40% Similarity=0.762 Sum_probs=28.3
Q ss_pred cEEEECC-ChHHHHHHHHHHHCCCeEEEEcC
Q 006891 73 DILVIGG-GATGCGVALDAATRGLRVGLVER 102 (627)
Q Consensus 73 DVvIIGg-Gi~G~~~A~~La~~G~~V~lvEk 102 (627)
.|+|.|| |..|..++..|+++|++|+++++
T Consensus 49 ~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 49 KVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 5999997 99999999999999999999985
No 474
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.84 E-value=1.8 Score=40.92 Aligned_cols=32 Identities=41% Similarity=0.566 Sum_probs=29.1
Q ss_pred CcEEEECC-ChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGG-GATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGg-Gi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
..++|+|| |.+|..+|..|++.|.+|.++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57999997 999999999999999999999764
No 475
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.80 E-value=2.3 Score=34.23 Aligned_cols=33 Identities=36% Similarity=0.592 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHC-CCeEEEEcCCCC
Q 006891 72 LDILVIGGGATGCGVALDAATR-GLRVGLVEREDF 105 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~-G~~V~lvEk~~~ 105 (627)
..++|+|.|.+|..+|..|.+. +.+|.++++ |+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-di 57 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-DI 57 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-CE
Confidence 4799999999999999999998 678999998 53
No 476
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.65 E-value=2.8 Score=39.89 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||.|..|+.+|..|++.|. +++|+|...+
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 4689999999999999999999998 5999998754
No 477
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.51 E-value=1.7 Score=44.75 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-CeEEEEcCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRG-LRVGLVERED 104 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G-~~V~lvEk~~ 104 (627)
...|.|||+|.+|.++|+.++..| ..++|+|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 357999999999999999999999 5899999864
No 478
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=83.29 E-value=1.4 Score=44.71 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 74 ILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
|.|||.|..|...|..|++.|++|++++++
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~ 31 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIG 31 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCC
Confidence 789999999999999999999999999875
No 479
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=82.98 E-value=1.2 Score=44.90 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=27.8
Q ss_pred cEEEECC-ChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGG-GATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGg-Gi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|+|.|| |.+|..++++|.++|++|++||--
T Consensus 4 ~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl 35 (343)
T KOG1371|consen 4 HVLVTGGAGYIGSHTVLALLKRGYGVVIVDNL 35 (343)
T ss_pred EEEEecCCcceehHHHHHHHhCCCcEEEEecc
Confidence 5778875 999999999999999999999974
No 480
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.88 E-value=2 Score=44.03 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--eEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGL--RVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~--~V~lvEk~~ 104 (627)
..|.|||+|-+|.++|+.|+..|+ .++|+|...
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 479999999999999999999987 699999753
No 481
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.83 E-value=1.5 Score=47.88 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|+|.|.+|.++|..|.++|.+|++.|.+.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 369999999999999999999999999999754
No 482
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.73 E-value=1.8 Score=41.88 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=27.8
Q ss_pred cEEEEC-CChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIG-GGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIG-gGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|.||| +|..|.+.|..|++.|.+|.++.++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 489997 6999999999999999999998664
No 483
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.71 E-value=1.6 Score=47.52 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|+|+|.|.+|.++|..|.++|++|.+.|..+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999864
No 484
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=82.70 E-value=1.7 Score=44.02 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
...|+|||.|-+|..+|..|...|.+|.++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999885
No 485
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=82.59 E-value=1.4 Score=47.10 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCeEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGLRVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~~ 105 (627)
...|+|+|-|.+|.++|..|.++|++|++.|....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC
Confidence 35799999999999999999999999999997653
No 486
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=82.40 E-value=1.7 Score=47.20 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATR--GLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~--G~~V~lvEk~~ 104 (627)
.|.|||.|.+|+.+|..||++ |++|+.+|.+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 599999999999999999998 58899999763
No 487
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=82.37 E-value=2.4 Score=47.14 Aligned_cols=35 Identities=29% Similarity=0.595 Sum_probs=31.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||+|-.|+.+|+.|+..|. ++++||.+.+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~V 373 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKV 373 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEE
Confidence 4689999999999999999999998 7999998754
No 488
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.29 E-value=1.6 Score=47.43 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
--|+|||.|.+|+++|+.|.++|++|.+.|...
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 359999999999999999999999999999754
No 489
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=82.23 E-value=2 Score=42.04 Aligned_cols=32 Identities=22% Similarity=0.659 Sum_probs=29.5
Q ss_pred EEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 74 ILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
|+|||+|..|+.++..|++.|. +++|+|.+.+
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 8999999999999999999998 7999998754
No 490
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=82.13 E-value=2 Score=43.30 Aligned_cols=33 Identities=27% Similarity=0.596 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
.|+|||+|-.|+.+|..|+..|. +++|+|.+.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~V 34 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKV 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 38999999999999999999998 7999998754
No 491
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=82.05 E-value=1.6 Score=47.46 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.+|.|||.|..|.+.|..|+++|++|.+.++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999863
No 492
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.00 E-value=1.8 Score=45.82 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
-.|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 479999999999999999999999999999764
No 493
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=81.90 E-value=2.5 Score=34.62 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=27.2
Q ss_pred EEEECCChHHHHHHHHHHHCC---CeEEEE-cCC
Q 006891 74 ILVIGGGATGCGVALDAATRG---LRVGLV-ERE 103 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G---~~V~lv-Ek~ 103 (627)
|.|||+|-.|.+.+.-+.+.| .+|.++ +++
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~ 35 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS 35 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc
Confidence 789999999999999999999 899976 765
No 494
>PRK08017 oxidoreductase; Provisional
Probab=81.88 E-value=2 Score=42.42 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=28.7
Q ss_pred cEEEECC-ChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 73 DILVIGG-GATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 73 DVvIIGg-Gi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
.|+|+|| |..|..+|..|+++|++|+++.++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4999999 999999999999999999998775
No 495
>PRK06153 hypothetical protein; Provisional
Probab=81.87 E-value=1.6 Score=45.50 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=31.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-eEEEEcCCCC
Q 006891 71 PLDILVIGGGATGCGVALDAATRGL-RVGLVEREDF 105 (627)
Q Consensus 71 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~lvEk~~~ 105 (627)
...|+|||.|-+|..++..|++.|. +++|+|...+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 4689999999999999999999998 8999998765
No 496
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.84 E-value=1.6 Score=44.63 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCCeEEEEcCCC
Q 006891 73 DILVIGGGATGCGVALDAATRGLRVGLVERED 104 (627)
Q Consensus 73 DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~~ 104 (627)
.|+|+|+|..|+..|+.|++.|..|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 48999999999999999999998888876643
No 497
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.74 E-value=2 Score=43.88 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=27.8
Q ss_pred EEEECCChHHHHHHHHHHHCCC--eEEEEcCC
Q 006891 74 ILVIGGGATGCGVALDAATRGL--RVGLVERE 103 (627)
Q Consensus 74 VvIIGgGi~G~~~A~~La~~G~--~V~lvEk~ 103 (627)
|.|||+|-+|.++|+.|+.+|+ .++|+|..
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 8999999999999999999987 69999975
No 498
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=81.66 E-value=1.2 Score=47.11 Aligned_cols=33 Identities=48% Similarity=0.655 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-------------CeEEEEcCCC
Q 006891 72 LDILVIGGGATGCGVALDAATRG-------------LRVGLVERED 104 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G-------------~~V~lvEk~~ 104 (627)
-+|+|||||.+|.-.|-+|+++- .+|.|||+.+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p 201 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP 201 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence 47999999999999999988641 3899999976
No 499
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.64 E-value=1.8 Score=47.46 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
-.|+|+|.|.+|++++..|..+|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35999999999999999999999999999965
No 500
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.47 E-value=2 Score=43.04 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCeEEEEcCC
Q 006891 72 LDILVIGGGATGCGVALDAATRGLRVGLVERE 103 (627)
Q Consensus 72 ~DVvIIGgGi~G~~~A~~La~~G~~V~lvEk~ 103 (627)
-.++|+|+|.+|.++|+.|++.|.+|.++++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47999999999999999999999999999874
Done!