BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006897
(627 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 47/217 (21%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS------------GRVRDQDFDPRSI 131
++ LK+V+ ++ E ++++GPSG+GKS++L II ++ D D +
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDR-VES 189
T +I+ R GFV Q+ NL+PLLT E + F+ +G MS +E+ R +E
Sbjct: 78 T----KIR-----RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 190 L----MDELGLTHVAGSFVGDEENR------------------GISGLDSTSALQVIELL 227
L ++E H G ++ R LDS + ++++LL
Sbjct: 129 LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLL 188
Query: 228 ASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
+ + +TVV+ H + ++ + + L G V
Sbjct: 189 KKLNEEDGKTVVVVTH--DINVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 47/217 (21%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS------------GRVRDQDFDPRSI 131
++ LK+V+ ++ E ++++GPSG+GKS++L II ++ D D +
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDR-VES 189
T +I+ R GFV Q+ NL+PLLT E + F+ +G MS +E+ R +E
Sbjct: 78 T----KIR-----RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 190 L----MDELGLTHVAGSFVGDEENR-GIS-----------------GLDSTSALQVIELL 227
L ++E H G ++ R I+ LDS + ++++LL
Sbjct: 129 LKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLL 188
Query: 228 ASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
+ + +TVV+ H + ++ + + L G V
Sbjct: 189 KKLNEEDGKTVVVVTH--DINVARFGERIIYLKDGEV 223
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 75 HLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVN 134
H L + L +LK ++ R+ E++ V+GPSG+GKS+ LR ++ +DFD I ++
Sbjct: 7 HQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL---EDFDEGEIIID 63
Query: 135 CHQIK-KPAQLRKI---CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL 190
+K K L K+ G V Q NL P +TV + A +++ ++ E + L
Sbjct: 64 GINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAMEL 122
Query: 191 MDELGLTHVAGSF 203
+D++GL A ++
Sbjct: 123 LDKVGLKDKAHAY 135
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK-KPA 142
L +LK ++ R+ E++ V+GPSG+GKS+ LR ++ +DFD I ++ +K K
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN---LLEDFDEGEIIIDGINLKAKDT 93
Query: 143 QLRKI---CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
L K+ G V Q NL P +TV + A +++ ++ E + L+D++GL
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAMELLDKVGLKDK 152
Query: 200 AGSF 203
A ++
Sbjct: 153 AHAY 156
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 36/235 (15%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG--RVRDQDFDPRSITVNCHQIKKPAQ 143
+L +S EIL ++G SG GK++LLR ++G + + T+ P +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF 203
R++ G++ QE L P LTV + + KG + +E++ R+E++++ G++ +AG +
Sbjct: 79 ERRL-GYLVQEGVLFPHLTVYRNIAYGLG-NGKGRTAQERQ-RIEAMLELTGISELAGRY 135
Query: 204 ------------------VGDEE----NRGISGLDSTSALQVIELLASMAKAKQRTVVLS 241
D E + S LD Q+ E + + +A ++ V
Sbjct: 136 PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV 195
Query: 242 IHQPSYRILQYISKFLILSRGSVVHYGSLELLEETINNLGYQIPTQLNAIEFAME 296
H LQY + ++ +G ++ S L Y+ P L+A F E
Sbjct: 196 SHD-REEALQYADRIAVMKQGRILQTASPHEL--------YRQPADLDAALFIGE 241
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 47/217 (21%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIIS------------GRVRDQDFDPRSI 131
++ LK+V+ ++ E +++ GPSG+GKS+ L II ++ D D +
Sbjct: 18 IYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 132 TVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKG-MSHKEKEDRV--- 187
T +I+ R GFV Q+ NL+PLLT E + F+ +G S +E+ R
Sbjct: 78 T----KIR-----RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALEC 128
Query: 188 --ESLMDELGLTHVAGSFVGDEENR------------------GISGLDSTSALQVIELL 227
+ ++E H G ++ R LDS + ++ +LL
Sbjct: 129 LKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLL 188
Query: 228 ASMAKAKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
+ + +TVV+ H + ++ + + L G V
Sbjct: 189 KKLNEEDGKTVVVVTH--DINVARFGERIIYLKDGEV 223
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 28/216 (12%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK-PAQLR 145
++ VSF+ R+ E++ ++GPSG+GK+++LR+I+G R D + + ++ P Q R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD---VWIGGKRVTDLPPQKR 87
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF-- 203
+ G V Q L +TV + + F R K + E + RV L+ + L A F
Sbjct: 88 NV-GLVFQNYALFQHMTVYDNVSF--GLREKRVPKDEMDARVRELLRFMRLESYANRFPH 144
Query: 204 --VGDEENRGISGLDSTSALQVI------ELLASMAKAKQRTVVLSIH-----------Q 244
G ++ R QV+ + + + + RT V +H
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204
Query: 245 PSYRILQYISKFLILSRGSVVHYGSLELLEETINNL 280
L+ + L+L G+V +G+ E + E L
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTL 240
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 47/255 (18%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQ-----DFDPRSITVNCHQIK 139
++LK V+ E +I VVG +G+GK++LL+I++G + D P
Sbjct: 25 YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPAD--------- 75
Query: 140 KPAQLRKICGFVAQE-DNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTH 198
P LRK G+V Q + + TV+E + FS + G+ E R++ +++ +GL+
Sbjct: 76 -PFLLRKNVGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKRIKKVLELVGLSG 132
Query: 199 VAGS----FVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQR 236
+A + G ++ R +S LD S ++ ++L S+ K + +
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESL-KNEGK 191
Query: 237 TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSL-ELLEETINNLGYQIPTQLNAIEFAM 295
++L H+ Y L + L +S G++ GS E +E +++ +IP + +
Sbjct: 192 GIILVTHELEY--LDDMDFILHISNGTIDFCGSWEEFVEREFDDV--EIPFKWKLWKKCG 247
Query: 296 EIMHPLEDSYSNNNN 310
+I + ED Y N+ N
Sbjct: 248 KI-NLWEDRYENSGN 261
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 40/219 (18%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNC---HQIKKP 141
ILK +SFE + EI ++GP+G GK++ LRIIS ++ P S V + +++P
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVEEP 83
Query: 142 AQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGL----- 196
++RK+ ++ +E + E L F A F S E E+ VE + GL
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY--ASSSSEIEEMVERATEIAGLGEKIK 141
Query: 197 ----THVAGSF----------------VGDEENRGISGLDSTSALQVIELLASMAKAKQR 236
T+ G + DE SGLD +A +V ++L A +
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPT---SGLDVLNAREVRKIL-KQASQEGL 197
Query: 237 TVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275
T+++S H + + ++ G++V G++E L+E
Sbjct: 198 TILVSSHN-MLEVEFLCDRIALIHNGTIVETGTVEELKE 235
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 35/213 (16%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKK 140
H LK ++ + E+ A++G +G GKS+L + +G ++ FD + I + I K
Sbjct: 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK 81
Query: 141 PAQLRKICGFVAQE-DNLLPLLTVKETLMFSA-NFRLKGMSHKEKEDRVESLMDELGLTH 198
LR+ G V Q+ DN L +V + + F A N +L E RV++ + G+ H
Sbjct: 82 ---LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL---PEDEIRKRVDNALKRTGIEH 135
Query: 199 ------------------VAGSFVGDEE----NRGISGLDSTSALQVIELLASMAKAKQR 236
+AG V + + + +GLD ++++LL M K
Sbjct: 136 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 237 TVVLSIHQPSYRILQYISKFLILSRGSVVHYGS 269
T++++ H L Y ++ G V+ G+
Sbjct: 196 TIIIATHDIDIVPL-YCDNVFVMKEGRVILQGN 227
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG----RVRDQDFDPRSITVNCHQIKKPA 142
L +V+ + E ++GPSG GK++ +RII+G + FD R + N I P
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI-VPP 79
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFS-ANFRLKGMSHKEKEDRVESLMDELGLTHVAG 201
+ RKI G V Q L P LT E + F N + MS +E RVE + L + HV
Sbjct: 80 EDRKI-GMVFQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLN 135
Query: 202 SF 203
F
Sbjct: 136 HF 137
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG----RVRDQDFDPRSITVNCHQIKKPA 142
L +V+ + E ++GPSG GK++ +RII+G + FD R + N I P
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFS-ANFRLKGMSHKEKEDRVESLMDELGLTHVAG 201
RKI G V Q L P LT E + F N + MS +E RVE + L + HV
Sbjct: 81 D-RKI-GMVFQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLN 135
Query: 202 SF 203
F
Sbjct: 136 HF 137
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG---RVRDQDFDPRSITVNCHQ-IKKPA 142
++ +S E +D E + ++GPSG GK++ LR+I+G R Q + + + + I P
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
+ R I V Q L P +TV + + F +L+ + +E + RV + + LGLT +
Sbjct: 79 KDRDIA-MVFQSYALYPHMTVYDNIAFP--LKLRKVPRQEIDQRVREVAELLGLTEL 132
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 34/219 (15%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRK 146
+ VSFE +D E +A++GPSG GK++ L +++G + + V + I P + R+
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI--PPKYRE 76
Query: 147 ICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV-----ESLMDELGLTHVAG 201
+ G V Q L P +TV E + F R + +S E E RV + L+D L L
Sbjct: 77 V-GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVEKRVVEIARKLLIDNL-LDRKPT 132
Query: 202 SFVGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIH 243
G ++ R +S LD+ L++I + A + +Q + S++
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN--LRMI-MRAEIKHLQQELGITSVY 189
Query: 244 --QPSYRILQYISKFLILSRGSVVHYGSLELLEETINNL 280
+ S+ + ++G +V YG+ + + ++ N+
Sbjct: 190 VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG---RVRDQDFDPRSITVNCHQ-IKKPA 142
+K +S E +D E L ++GPSG GK++ LR I+G R Q + ++ + + + P
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
+ R + V Q L P TV + + F +L+ + +E + RV + + LGLT +
Sbjct: 82 KERDVA-XVFQSYALYPHXTVYDNIAFP--LKLRKVPKQEIDKRVREVAEXLGLTEL 135
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 29/208 (13%)
Query: 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKI 147
K ++ + + E + VGPSG GKS+LLR+I+G + + + ++ +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERG 76
Query: 148 CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----AGSF 203
G V Q L P L+V E + F +L G + RV + + L L H+ +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134
Query: 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245
G + R +S LD+ +Q+ ++ + K RT++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD- 193
Query: 246 SYRILQYISKFLILSRGSVVHYGS-LEL 272
+ K ++L G V G LEL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 29/208 (13%)
Query: 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKI 147
K ++ + + E + VGPSG GKS+LLR+I+G + + + ++ +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERG 76
Query: 148 CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----AGSF 203
G V Q L P L+V E + F +L G + RV + + L L H+ +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134
Query: 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245
G + R +S LD+ +Q+ ++ + K RT++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD- 193
Query: 246 SYRILQYISKFLILSRGSVVHYGS-LEL 272
+ K ++L G V G LEL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 29/208 (13%)
Query: 88 KSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKI 147
K ++ + + E + VGPSG GKS+LLR+I+G + + + ++ +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPPAERG 76
Query: 148 CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV----AGSF 203
G V Q L P L+V E + F +L G + RV + + L L H+ +
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134
Query: 204 VGDEENR------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQP 245
G + R +S LD+ +Q+ ++ + K RT++ H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD- 193
Query: 246 SYRILQYISKFLILSRGSVVHYGS-LEL 272
+ K ++L G V G LEL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKK--PAQ 143
ILK ++ E +A VG SG GKS+L+ +I R D I ++ H IK
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP---RFYDVTSGQILIDGHNIKDFLTGS 412
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFS 170
LR G V Q+DN+L TVKE ++
Sbjct: 413 LRNQIGLV-QQDNILFSDTVKENILLG 438
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 78 HEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQ 137
++ K P +LK ++F + + +A+VGP+G+GK++++ ++ +R D D I V+
Sbjct: 364 YDKKKP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLL---MRFYDVDRGQILVDGID 418
Query: 138 IK--KPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170
I+ K + LR G V Q D +L TVKE L +
Sbjct: 419 IRKIKRSSLRSSIGIVLQ-DTILFSTTVKENLKYG 452
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPA 142
L +++ + +D E +A++GPSG+GKS+LL I+G + FD + +T + P
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT------ELPP 72
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFR 174
+ R + G V Q L P +TV + + F R
Sbjct: 73 KDRNV-GLVFQNWALYPHMTVYKNIAFPLELR 103
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 11/118 (9%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR----SITVNCHQIKK 140
ILK +S + E ++++G SG+GKS+LL I+ + D + + V+ K+
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 141 PAQLR-KICGFVAQEDNLLPLLTVKETLMFSANFRLK-GMSHKEKEDRVESLMDELGL 196
+ LR + GFV Q L+P LT E ++ LK G KE ++R E L+ ELGL
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGL 130
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 94/200 (47%), Gaps = 39/200 (19%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+ + ++F+ +ILAV+G +G GKS+LL ++ G R I+ ++
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--------------IQGKIEVY 65
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESL--MDELGLTHVAG-- 201
+ GFV Q + +V + ++ + + + + D ++ +D L LTH+A
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE 125
Query: 202 --SFVGDEEN-----RGISG------LDS-TSALQ------VIELLASMAKAKQRTVVLS 241
S G + R I+ LD TSAL V+ LL +A+++ TVV +
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 242 IHQPSYRILQYISKFLILSR 261
HQP+ +++ +K L+L++
Sbjct: 186 THQPN-QVVAIANKTLLLNK 204
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139
P+VP I + S + A+VGPSG+GKS++L ++ +R D +I+++ H I+
Sbjct: 386 PEVP--IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIR 440
Query: 140 K--PAQLRKICGFVAQEDNLLPLLTVKETLMFSAN 172
+ P LR G V+QE L ++ E + + A+
Sbjct: 441 QLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGAD 474
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 14/98 (14%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139
P+VP I + S + A+VGPSG+GKS++L ++ +R D +I+++ H I+
Sbjct: 355 PEVP--IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL---LRLYDPASGTISLDGHDIR 409
Query: 140 K--PAQLRKICGFVAQEDNLLPLL---TVKETLMFSAN 172
+ P LR G V+QE P+L ++ E + + A+
Sbjct: 410 QLNPVWLRSKIGTVSQE----PILFSCSIAENIAYGAD 443
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 69/127 (54%), Gaps = 25/127 (19%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQ 137
P +P +L+ +S E + + LA+VG SG GKS++++++ ++ +DP S+ ++ +
Sbjct: 1044 PSIP--VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL-----ERFYDPMAGSVFLDGKE 1096
Query: 138 IKK--PAQLRKICGFVAQEDNLLPLL---TVKETLMFSANFRLKGMSHKE-----KEDRV 187
IK+ LR G V+QE P+L ++ E + + N R+ +S++E KE +
Sbjct: 1097 IKQLNVQWLRAQLGIVSQE----PILFDCSIAENIAYGDNSRV--VSYEEIVRAAKEANI 1150
Query: 188 ESLMDEL 194
+D L
Sbjct: 1151 HQFIDSL 1157
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 75 HLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI-------ISGRVRDQDFD 127
H + + + ILK ++ + + + +A+VG SG GKS+ +++ + G V D
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 128 PRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170
R+I V LR+I G V+QE L T+ E + +
Sbjct: 454 IRTINVRY--------LREIIGVVSQEPVLFA-TTIAENIRYG 487
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 69/127 (54%), Gaps = 25/127 (19%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPR--SITVNCHQ 137
P +P +L+ +S E + + LA+VG SG GKS++++++ ++ +DP S+ ++ +
Sbjct: 1044 PSIP--VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL-----ERFYDPMAGSVFLDGKE 1096
Query: 138 IKK--PAQLRKICGFVAQEDNLLPLL---TVKETLMFSANFRLKGMSHKE-----KEDRV 187
IK+ LR G V+QE P+L ++ E + + N R+ +S++E KE +
Sbjct: 1097 IKQLNVQWLRAQLGIVSQE----PILFDCSIAENIAYGDNSRV--VSYEEIVRAAKEANI 1150
Query: 188 ESLMDEL 194
+D L
Sbjct: 1151 HQFIDSL 1157
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 75 HLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI-------ISGRVRDQDFD 127
H + + + ILK ++ + + + +A+VG SG GKS+ +++ + G V D
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 128 PRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFS 170
R+I V LR+I G V+QE L T+ E + +
Sbjct: 454 IRTINVRY--------LREIIGVVSQEPVLFA-TTIAENIRYG 487
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 10/89 (11%)
Query: 85 HILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS--ITVNCHQIKKPA 142
IL+ +SFEA+ + I+A GPSG GKS++ ++ ++ + P + IT++ I +
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-----ERFYQPTAGEITIDGQPIDNIS 70
Query: 143 --QLRKICGFVAQEDNLLPLLTVKETLMF 169
R GFV+Q D+ + T++E L +
Sbjct: 71 LENWRSQIGFVSQ-DSAIMAGTIRENLTY 98
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 84 LHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIK 139
+H +K + + +I+ ++G +G GK++ L I+G VR Q F+ + IT
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT------N 72
Query: 140 KPAQL--RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELG-- 195
KPA + R V + + P LTV E L A R K + + SL L
Sbjct: 73 KPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKER 132
Query: 196 LTHVAGSFVGDEEN 209
L + G+ G E+
Sbjct: 133 LKQLGGTLSGGEQQ 146
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 59/252 (23%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T RN+ + +P++ + IL +++ + E++ +VG SG+GKS+L ++
Sbjct: 2 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48
Query: 117 ISGRVRDQDF---DPRSITVNCHQ--IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171
I Q F + + ++ H + P LR+ G V Q++ LL + + +
Sbjct: 49 I------QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 102
Query: 172 NFRLKGMSHKEKEDRVESLMDEL--GLTHVAGSFVGDEENRGISGL-------------- 215
++ + + K + EL G + G E+ G+SG
Sbjct: 103 GMSVEKVIYAAKLAGAHDFISELREGYNTIVG-----EQGAGLSGGQRQRIAIARALVNN 157
Query: 216 -------DSTSALQVIE---LLASMAK-AKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
++TSAL ++ +M K K RTV++ H+ S ++ + +++ +G +
Sbjct: 158 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEKGKI 215
Query: 265 VHYGS-LELLEE 275
V G ELL E
Sbjct: 216 VEQGKHKELLSE 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 59/252 (23%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T RN+ + +P++ + IL +++ + E++ +VG SG+GKS+L ++
Sbjct: 8 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 117 ISGRVRDQDF---DPRSITVNCHQ--IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171
I Q F + + ++ H + P LR+ G V Q++ LL + + +
Sbjct: 55 I------QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 108
Query: 172 NFRLKGMSHKEKEDRVESLMDEL--GLTHVAGSFVGDEENRGISGL-------------- 215
++ + + K + EL G + G E+ G+SG
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISELREGYNTIVG-----EQGAGLSGGQRQRIAIARALVNN 163
Query: 216 -------DSTSALQVIE---LLASMAK-AKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
++TSAL ++ +M K K RTV++ H+ S ++ + +++ +G +
Sbjct: 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEKGKI 221
Query: 265 VHYGS-LELLEE 275
V G ELL E
Sbjct: 222 VEQGKHKELLSE 233
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 59/252 (23%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T RN+ + +P++ + IL +++ + E++ +VG SG+GKS+L ++
Sbjct: 4 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 50
Query: 117 ISGRVRDQDF---DPRSITVNCHQ--IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171
I Q F + + ++ H + P LR+ G V Q++ LL + + +
Sbjct: 51 I------QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 104
Query: 172 NFRLKGMSHKEKEDRVESLMDEL--GLTHVAGSFVGDEENRGISG--------------- 214
++ + + K + EL G + G E+ G+SG
Sbjct: 105 GMSVEKVIYAAKLAGAHDFISELREGYNTIVG-----EQGAGLSGGQRQRIAIARALVNN 159
Query: 215 ------LDSTSALQVIE---LLASMAK-AKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
++TSAL ++ +M K K RTV++ H+ S ++ + +++ +G +
Sbjct: 160 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEKGKI 217
Query: 265 VHYGS-LELLEE 275
V G ELL E
Sbjct: 218 VEQGKHKELLSE 229
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 20/148 (13%)
Query: 46 LPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVP-LHILKSVSFEARDSEILAVVG 104
L ++ K KV +N+ +A P+ P + ILK +SF + LA+VG
Sbjct: 1066 LAGEKKKLYGKVIFKNVRFAY-------------PERPEIEILKGLSFSVEPGQTLALVG 1112
Query: 105 PSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQLRKICGFVAQEDNLLPLLT 162
PSG GKS+++ ++ R D I ++ +IK P R V+QE L +
Sbjct: 1113 PSGCGKSTVVALLE---RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CS 1168
Query: 163 VKETLMFSANFRLKGMSHKEKEDRVESL 190
+ E +++ + M+ E+ R+ ++
Sbjct: 1169 IAENIIYGLDPSSVTMAQVEEAARLANI 1196
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSS----LLR---IISGRVRDQDFDPRSIT 132
P VP IL+ ++ + +A+VG SG GKS+ LLR ++ G++ D R I
Sbjct: 429 PDVP--ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN 486
Query: 133 VNCHQIKKPAQLRKICGFVAQEDNLLPLLTVKETL 167
+ LRK V+QE L T++E +
Sbjct: 487 LEF--------LRKNVAVVSQEPALFN-CTIEENI 512
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 107/252 (42%), Gaps = 59/252 (23%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T RN+ + +P++ + IL +++ + E++ +VG SG+GKS+L ++
Sbjct: 8 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 117 ISGRVRDQDF---DPRSITVNCHQ--IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171
I Q F + + ++ H + P LR+ G V Q++ LL + + +
Sbjct: 55 I------QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 108
Query: 172 NFRLKGMSHKEKEDRVESLMDEL--GLTHVAGSFVGDEENRGISGL-------------- 215
++ + + K + EL G + G E+ G+SG
Sbjct: 109 GMSVEKVIYAAKLAGAHDFISELREGYNTIVG-----EQGAGLSGGQRQRIAIARALVNN 163
Query: 216 -------DSTSALQVIE---LLASMAK-AKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
+TSAL ++ +M K K RTV++ H+ S ++ + +++ +G +
Sbjct: 164 PKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEKGKI 221
Query: 265 VHYGS-LELLEE 275
V G ELL E
Sbjct: 222 VEQGKHKELLSE 233
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 59/252 (23%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T RN+ + +P++ + IL +++ + E++ +VG +G+GKS+L ++
Sbjct: 4 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRAGSGKSTLTKL 50
Query: 117 ISGRVRDQDF---DPRSITVNCHQ--IKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSA 171
I Q F + + ++ H + P LR+ G V Q++ LL + + +
Sbjct: 51 I------QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 104
Query: 172 NFRLKGMSHKEKEDRVESLMDEL--GLTHVAGSFVGDEENRGISGL-------------- 215
++ + + K + EL G + G E+ G+SG
Sbjct: 105 GMSVEKVIYAAKLAGAHDFISELREGYNTIVG-----EQGAGLSGGQRQRIAIARALVNN 159
Query: 216 -------DSTSALQVIE---LLASMAK-AKQRTVVLSIHQPSYRILQYISKFLILSRGSV 264
++TSAL ++ +M K K RTV++ H+ S ++ + +++ +G +
Sbjct: 160 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS--TVKNADRIIVMEKGKI 217
Query: 265 VHYGS-LELLEE 275
V G ELL E
Sbjct: 218 VEQGKHKELLSE 229
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 47/220 (21%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQ--L 144
L+ VSF + LA+VGPSG GKS++LR++ R D I ++ I + Q L
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLL---FRFYDISSGCIRIDGQDISQVTQASL 126
Query: 145 RKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHVAGSF- 203
R G V Q D +L T+ + + + R+ + D VE+ G+ +F
Sbjct: 127 RSHIGVVPQ-DTVLFNDTIADNIRYG---RVTAGN-----DEVEAAAQAAGIHDAIMAFP 177
Query: 204 --------------VGDEENR-----------GISGLD-STSALQVIE---LLASMAKA- 233
G E+ R GI LD +TSAL + AS+AK
Sbjct: 178 EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237
Query: 234 KQRTVVLSIHQPSYRILQYISKFLILSRGSVVHYGSLELL 273
RT ++ H+ S + + L++ G +V G E L
Sbjct: 238 ANRTTIVVAHRLSTVV--NADQILVIKDGCIVERGRHEAL 275
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 24/107 (22%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T RN+ + +P++ + IL +++ + E++ +VG SG+GKS+L ++
Sbjct: 2 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 48
Query: 117 ISGRVRDQDF---DPRSITVNCHQ--IKKPAQLRKICGFVAQEDNLL 158
I Q F + + ++ H + P LR+ G V Q++ LL
Sbjct: 49 I------QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 24/107 (22%)
Query: 57 VTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRI 116
+T RN+ + +P++ + IL +++ + E++ +VG SG+GKS+L ++
Sbjct: 8 ITFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 54
Query: 117 ISGRVRDQDF---DPRSITVNCHQ--IKKPAQLRKICGFVAQEDNLL 158
I Q F + + ++ H + P LR+ G V Q++ LL
Sbjct: 55 I------QRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
++ VS E++A++GP+G GKS+LLR+++G
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTG 59
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 33/208 (15%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDF---DPRSITVNCHQIKKPAQ 143
L ++S + E ++GP+G GK+ L +I+G F D I ++ + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG------FHVPDSGRILLDGKDVTDLSP 69
Query: 144 LRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKE------KEDRVESLMDELGLT 197
+ FV Q +L P + VK+ L F R+K + + ++ ++E L+D LT
Sbjct: 70 EKHDIAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127
Query: 198 HVAG---------SFVGDEE----NRGISGLDSTSALQVIELLASMAKAKQRTVVLSIH- 243
G + V + + + +S LD + E+L+ + K + TV+ H
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 244 QPSYRILQYISKFLILSRGSVVHYGSLE 271
Q RI+ + ++ G ++ G E
Sbjct: 188 QTEARIMA--DRIAVVMDGKLIQVGKPE 213
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
Query: 89 SVSFE-ARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKI 147
+V FE RD +L +GP+G GKS L +I+G V+ D + +N I R+
Sbjct: 17 NVDFEMGRDYCVL--LGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRG 71
Query: 148 CGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRVESLMDELGLTHV 199
GFV Q+ L P L+V + + L+ + E++ RV + ++LG+ H+
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYG----LRNVERVERDRRVREMAEKLGIAHL 119
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+LK ++F+ ++LAV G +G GK+SLL +I G + + +IK ++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE----------GKIKHSGRIS 72
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANF 173
F +Q ++P T+KE ++F ++
Sbjct: 73 ----FCSQFSWIMP-GTIKENIIFGVSY 95
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPA 142
L VS ++ ++GP+G+GKS+L+ +I+G ++ + F+ + IT K+PA
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN-----KEPA 77
Query: 143 QL 144
+L
Sbjct: 78 EL 79
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+LK ++F+ ++LAV G +G GK+SLL +I G + + +IK ++
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE----------GKIKHSGRIS 84
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANF 173
F +Q ++P T+KE ++F ++
Sbjct: 85 ----FCSQFSWIMP-GTIKENIIFGVSY 107
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPA 142
L VS ++ ++GP+G+GKS+L+ +I+G ++ + F+ + IT K+PA
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN-----KEPA 77
Query: 143 QL 144
+L
Sbjct: 78 EL 79
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 15/88 (17%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLR 145
+LK ++F+ ++LAV G +G GK+SLL +I G + + +IK ++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE----------GKIKHSGRI- 101
Query: 146 KICGFVAQEDNLLPLLTVKETLMFSANF 173
F +Q ++P T+KE ++F ++
Sbjct: 102 ---SFCSQFSWIMP-GTIKENIIFGVSY 125
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK--KPAQL 144
L VSF + +A+VG SG+GKS++ + + R D D SI ++ H ++ K L
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT---RFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 145 RKICGFVAQEDNLL 158
R+ V+Q +L
Sbjct: 416 RRHFALVSQNVHLF 429
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 32/201 (15%)
Query: 71 SILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS 130
S ++ + H+ + L +VS +I V+G SG GKS+L+R ++ R + S
Sbjct: 5 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GS 61
Query: 131 ITVNCHQI-----KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED 185
+ V+ ++ + + R+ G + Q NLL TV + L E +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVKR 119
Query: 186 RVESLMDELGLTHVAGSF----VGDEENR------------------GISGLDSTSALQV 223
RV L+ +GL S+ G ++ R S LD + +
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 224 IELLASMAKAKQRTVVLSIHQ 244
+ELL + + T++L H+
Sbjct: 180 LELLKDINRRLGLTILLITHE 200
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRII-------SGRVRDQDFDPRSITVNCHQI 138
+L V+F + ++AV+G +G+GKS+L+ +I GRV + D R++
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV------- 410
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETL 167
K LR V QE L T+KE L
Sbjct: 411 -KLKDLRGHISAVPQETVLFS-GTIKENL 437
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPA 142
+ ++ +D E L ++GPSG GK++ LR+I+G + F R +T P
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY------LPP 81
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187
+ R I V Q + P +TV E + F ++K E + RV
Sbjct: 82 KDRNIS-MVFQSYAVWPHMTVYENIAFP--LKIKKFPKDEIDKRV 123
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPA 142
+ ++ +D E L ++GPSG GK++ LR+I+G + F R +T P
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY------LPP 80
Query: 143 QLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKEDRV 187
+ R I V Q + P +TV E + F ++K E + RV
Sbjct: 81 KDRNIS-MVFQSYAVWPHMTVYENIAFP--LKIKKFPKDEIDKRV 122
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCHQIKKPA 142
L VS ++ ++GP+G+GKS+L+ +I+G ++ + F+ + IT K+PA
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN-----KEPA 77
Query: 143 QL 144
+L
Sbjct: 78 EL 79
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 32/201 (15%)
Query: 71 SILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS 130
S ++ + H+ + L +VS +I V+G SG GKS+L+R ++ R + S
Sbjct: 28 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GS 84
Query: 131 ITVNCHQI-----KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED 185
+ V+ ++ + + R+ G + Q NLL TV + L E +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVKR 142
Query: 186 RVESLMDELGLTHVAGSF----VGDEENR------------------GISGLDSTSALQV 223
RV L+ +GL S+ G ++ R S LD + +
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 224 IELLASMAKAKQRTVVLSIHQ 244
+ELL + + T++L H+
Sbjct: 203 LELLKDINRRLGLTILLITHE 223
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133
IL+ +S + E+ A++GP+G+GKS+L ++GR +D++ TV
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR---EDYEVTGGTV 79
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITV 133
IL+ +S + E+ A++GP+G+GKS+L ++GR +D++ TV
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR---EDYEVTGGTV 60
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR 122
+LK ++F+ ++LAV G +G GK+SLL +I G +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVR 122
+LK ++F+ ++LAV G +G GK+SLL +I G +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+LK ++F+ ++LAV G +G GK+SLL +I G +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
L +S E R EIL +VGP+G GKS+LL ++G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+LK ++F+ ++LAV G +G GK+SLL +I G +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
L +S E R EIL +VGP+G GKS+LL ++G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+LK ++F+ ++LAV G +G GK+SLL +I G +
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 93 EARDSEILAVVGPSGTGKSSLLRIISGRV 121
EA++ EI+ ++GP+G GK++ RI+ G +
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEI 318
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 95 RDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQ- 153
+++ IL V+G +G GK+++L+I++G + DP S V ++ K + ++I + +
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS-KVGKDEVLKRFRGKEIYNYFKEL 81
Query: 154 EDNLLPLLTVKETLMFSANFRLKG--------MSHKEKEDRVESLMD 192
N L ++ + + +++ F LKG + + K+D V+ L++
Sbjct: 82 YSNELKIVHKIQYVEYASKF-LKGTVNEILTKIDERGKKDEVKELLN 127
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 39/60 (65%), Gaps = 5/60 (8%)
Query: 93 EARDSEILAVVGPSGTGKSSLLRIISGRVR---DQDFDPRSITVNCHQI--KKPAQLRKI 147
E DSEIL ++G +GTGK++L+++++G ++ QD ++++ +I K P +R++
Sbjct: 374 EFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQL 433
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 13/76 (17%)
Query: 55 CKVTVRNLSY-AIQ----PNTSILSHLLHE---PKVPLHILKSVSFEARDSEILAVVGPS 106
C + V+ + AIQ P T++ +H+ H LH L + R ++L +VG +
Sbjct: 58 CGICVKKCPFDAIQIINLP-TNLEAHVTHRYSANSFKLHRLPT----PRPGQVLGLVGTN 112
Query: 107 GTGKSSLLRIISGRVR 122
G GKS+ L+I++G+ +
Sbjct: 113 GIGKSTALKILAGKQK 128
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 32/201 (15%)
Query: 71 SILSHLLHEPKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRS 130
S ++ + H+ + L +VS +I V+G SG GKS+L+R ++ R + S
Sbjct: 28 SNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG---S 84
Query: 131 ITVNCHQI-----KKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSHKEKED 185
+ V+ ++ + + R+ G + Q NLL TV + L E +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALP--LELDNTPKDEVKR 142
Query: 186 RVESLMDELGLTHVAGSF----VGDEENR------------------GISGLDSTSALQV 223
RV L+ +GL S+ G ++ R S LD + +
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 224 IELLASMAKAKQRTVVLSIHQ 244
+ELL + + T++L H+
Sbjct: 203 LELLKDINRRLGLTILLITHE 223
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+LK+++ E+LA+ G +G+GK+SLL +I G +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL 88
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+LK+++ E+LA+ G +G+GK+SLL +I G +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL 88
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+LK+++ E+LA+ G +G+GK+SLL +I G +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL 88
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+LK+++ E+LA+ G +G+GK+SLL +I G +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL 88
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+LK+++ E+LA+ G +G+GK+SLL +I G +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL 88
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
L +S E R EIL +VGP+G GKS+LL +G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG 48
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
L +S E R EIL +VGP+G GKS+LL +G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG 48
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
ILK V+ E+ A++GP+G GKS+L +I++G
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 28/215 (13%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQD----FDPRSITVNCH----- 136
+L+ ++F R E+ A+VGP+G+GKS++ ++ + D + + H
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 137 QIKKPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLKGMSH---KEKEDRVESLMDE 193
Q+ Q ++ G QE N+ LT K T+ +K +H ++ +DE
Sbjct: 92 QVAAVGQEPQVFGRSLQE-NIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDE 150
Query: 194 LGLTHVAGSFVGDEENRGI-------------SGLDSTSALQVIELLASMAKAKQRTVVL 240
G G R + S LD+ S LQV +LL + R+V+L
Sbjct: 151 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL 210
Query: 241 SIHQPSYRILQYISKFLILSRGSVVHYGSLELLEE 275
S +++ L L G++ G+ + L E
Sbjct: 211 ITQHLS--LVEQADHILFLEGGAIREGGTHQQLME 243
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+ ++F+ S +AV+GP+G GKS+L+ +++G +
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 80 PKVPLH-ILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQI 138
PK H LKS++F A+VG +G+GKS++ +++ R D + D + N ++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGKNVNKY 86
Query: 139 KKPAQLRKICGFVAQEDNLLPLLTVKETLMF 169
+ + +R I G V Q D +L T+K +++
Sbjct: 87 NRNS-IRSIIGIVPQ-DTILFNETIKYNILY 115
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+ ++F+ S +AV+GP+G GKS+L+ +++G +
Sbjct: 683 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 717
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRV 121
+ ++F+ S +AV+GP+G GKS+L+ +++G +
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 86 ILKSVSFEARDSEILAVVGPSGTGKSSL----LRIIS--GRVRDQDFDPRSITVNCHQIK 139
IL+++SF + + ++G +G+GKS+L LR+++ G ++ SIT+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLE----- 90
Query: 140 KPAQLRKICGFVAQEDNLLPLLTVKETLMFSANFRLK---GMSHKEKEDRVESLMDELGL 196
Q RK G + Q + +FS FR +H ++E + + DE+GL
Sbjct: 91 ---QWRKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQE--IWKVADEVGL 134
Query: 197 THVAGSFVG 205
V F G
Sbjct: 135 RSVIEQFPG 143
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121
+D ++ +VGP+GTGK++ ++I++G++
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 93 EARDSEILAVVGPSGTGKSSLLRIISG 119
E R E++ +VGP+G GK++ +++++G
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAG 404
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121
+D ++ +VGP+GTGK++ ++I++G++
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQL 127
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 93 EARDSEILAVVGPSGTGKSSLLRIISG 119
E R E++ +VGP+G GK++ +++++G
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAG 390
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139
P + L++++ + + +A+VG SG+GKS++ +I+ R D D I ++ H ++
Sbjct: 352 PGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT---RFYDIDEGEILMDGHDLR 408
Query: 140 K--PAQLRKICGFVAQEDNL 157
+ A LR V+Q +L
Sbjct: 409 EYTLASLRNQVALVSQNVHL 428
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 80 PKVPLHILKSVSFEARDSEILAVVGPSGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIK 139
P + L++++ + + +A+VG SG+GKS++ +I+ R D D I ++ H ++
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT---RFYDIDEGHILMDGHDLR 408
Query: 140 K--PAQLRKICGFVAQEDNL 157
+ A LR V+Q +L
Sbjct: 409 EYTLASLRNQVALVSQNVHL 428
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 95 RDSEILAVVGPSGTGKSSLLRIISGRV 121
++ ++ +VGP+GTGKS+ ++I++G++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQL 71
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 93 EARDSEILAVVGPSGTGKSSLLRIISG 119
E + E++ +VGP+G GK++ ++ ++G
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAG 334
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Query: 87 LKSVSFEARDSEILAVVGPSGTGKSSLLRIISG 119
L++++ E + E + ++GP+G+GK++LLR ISG
Sbjct: 21 LENINLEV-NGEKVIILGPNGSGKTTLLRAISG 52
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 268 GSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRCE 327
G + LLE ++ LGY + EF + + L+ N N L + E+ +++ L C+
Sbjct: 187 GLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLK---PNGANILVTEENKKEYVHLVCQ 243
Query: 328 --KVGGVEHQQHAFFLILYEIM 347
G + Q AF YEI+
Sbjct: 244 MRMTGAIRKQLAAFLEGFYEII 265
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 98/269 (36%), Gaps = 71/269 (26%)
Query: 46 LPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGP 105
L P +K K + +Y PN + +L+ ++F ++ A+VGP
Sbjct: 8 LAPLNMKGLVKFQDVSFAYPNHPN--------------VQVLQGLTFTLYPGKVTALVGP 53
Query: 106 SGTGKSSLLRIISGRVRDQDFDPRSITVNCHQIKKPAQLRKICGFVAQEDNLLPLLTV-- 163
+G+GKS++ ++ N +Q L V + + L
Sbjct: 54 NGSGKSTVAALLQ---------------NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98
Query: 164 -KETLMFSANFRLK---GMSHKEKEDRVESLMDELGLTHVAGSF-------VGDEENR-- 210
+E L+F +FR G++ + + ++ E G F VG+ N+
Sbjct: 99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLS 158
Query: 211 ------------------------GISGLDSTSALQVIELLASMAKAKQRTVVLSIHQPS 246
S LD+ + L+V LL + RTV+L HQ S
Sbjct: 159 GGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS 218
Query: 247 YRILQYISKFLILSRGSVVHYGS-LELLE 274
+ + L L GSV G+ L+L+E
Sbjct: 219 --LAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 268 GSLELLEETINNLGYQIPTQLNAIEFAMEIMHPLEDSYSNNNNFLPSVEDAEQFPDLRCE 327
G + LLE ++ LGY + EF + + D N N L + E+ +++ L C+
Sbjct: 170 GLVYLLENDVSTLGYDLTFSTEVQEFG---VCEVRDLKPNGANILVTEENKKEYVHLVCQ 226
Query: 328 --KVGGVEHQQHAFFLILYEIM 347
G + Q AF YEI+
Sbjct: 227 MRMTGAIRKQLAAFLEGFYEII 248
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 46 LPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGP 105
L P +K K + +Y PN + +L+ ++F ++ A+VGP
Sbjct: 8 LAPLNMKGLVKFQDVSFAYPNHPN--------------VQVLQGLTFTLYPGKVTALVGP 53
Query: 106 SGTGKSSLLRII 117
+G+GKS++ ++
Sbjct: 54 NGSGKSTVAALL 65
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 46 LPPQRLKTTCKVTVRNLSYAIQPNTSILSHLLHEPKVPLHILKSVSFEARDSEILAVVGP 105
L P +K K + +Y PN + +L+ ++F ++ A+VGP
Sbjct: 8 LAPLNMKGLVKFQDVSFAYPNHPN--------------VQVLQGLTFTLYPGKVTALVGP 53
Query: 106 SGTGKSSLLRII 117
+G+GKS++ ++
Sbjct: 54 NGSGKSTVAALL 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,614,049
Number of Sequences: 62578
Number of extensions: 591794
Number of successful extensions: 1659
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1538
Number of HSP's gapped (non-prelim): 125
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)